Query 004879
Match_columns 725
No_of_seqs 202 out of 2031
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 14:25:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004879.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004879hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02939 transferase, transfer 100.0 1E-160 3E-165 1399.6 64.6 691 1-720 177-894 (977)
2 PRK14099 glycogen synthase; Pr 100.0 4.9E-59 1.1E-63 526.7 33.6 375 330-721 1-408 (485)
3 PRK14098 glycogen synthase; Pr 100.0 1.5E-58 3.3E-63 523.2 34.1 378 330-721 3-420 (489)
4 PLN02316 synthase/transferase 100.0 1.4E-58 3.1E-63 550.0 34.0 406 262-721 506-958 (1036)
5 TIGR02095 glgA glycogen/starch 100.0 1.6E-56 3.5E-61 503.0 34.5 377 333-721 1-404 (473)
6 PRK00654 glgA glycogen synthas 100.0 9.2E-57 2E-61 505.1 32.4 369 333-721 1-395 (466)
7 COG0297 GlgA Glycogen synthase 100.0 3E-55 6.5E-60 491.0 31.0 376 333-721 1-407 (487)
8 cd03791 GT1_Glycogen_synthase_ 100.0 5.6E-53 1.2E-57 472.4 34.6 380 334-721 1-409 (476)
9 TIGR02094 more_P_ylases alpha- 100.0 3E-36 6.5E-41 347.3 31.6 380 335-720 1-527 (601)
10 PF08323 Glyco_transf_5: Starc 100.0 5.2E-38 1.1E-42 326.3 12.7 229 334-574 1-244 (245)
11 cd04299 GT1_Glycogen_Phosphory 100.0 9.3E-32 2E-36 315.6 31.1 378 334-720 87-616 (778)
12 TIGR02470 sucr_synth sucrose s 100.0 3.5E-28 7.5E-33 285.1 29.9 360 307-710 234-670 (784)
13 TIGR02472 sucr_P_syn_N sucrose 100.0 4E-28 8.7E-33 271.0 29.2 300 347-710 24-367 (439)
14 TIGR03449 mycothiol_MshA UDP-N 100.0 1.1E-27 2.4E-32 261.9 26.3 298 335-717 1-337 (405)
15 cd03796 GT1_PIG-A_like This fa 100.0 1E-27 2.2E-32 263.4 25.8 282 334-721 1-308 (398)
16 TIGR02468 sucrsPsyn_pln sucros 100.0 2E-27 4.4E-32 283.6 29.3 347 328-710 165-598 (1050)
17 TIGR02149 glgA_Coryne glycogen 100.0 2.5E-27 5.5E-32 256.3 26.5 279 333-711 1-308 (388)
18 PLN02871 UDP-sulfoquinovose:DA 100.0 6E-27 1.3E-31 263.2 26.7 286 329-711 55-359 (465)
19 PRK10307 putative glycosyl tra 100.0 1.6E-26 3.5E-31 254.4 28.0 304 333-712 1-336 (412)
20 cd04962 GT1_like_5 This family 99.9 4.5E-26 9.7E-31 244.0 27.2 275 333-710 1-297 (371)
21 PLN00142 sucrose synthase 99.9 2.8E-26 6.1E-31 269.2 23.4 364 307-720 258-715 (815)
22 PRK10125 putative glycosyl tra 99.9 9.7E-26 2.1E-30 250.3 24.8 303 333-716 1-340 (405)
23 cd03800 GT1_Sucrose_synthase T 99.9 5.7E-25 1.2E-29 236.9 26.8 286 348-717 20-337 (398)
24 cd03812 GT1_CapH_like This fam 99.9 1.4E-24 3.1E-29 230.4 25.1 281 334-721 1-305 (358)
25 cd03793 GT1_Glycogen_synthase_ 99.9 1.4E-24 3.1E-29 245.9 23.6 290 336-659 5-326 (590)
26 cd03805 GT1_ALG2_like This fam 99.9 1.1E-24 2.4E-29 236.1 21.7 294 333-717 1-334 (392)
27 TIGR03088 stp2 sugar transfera 99.9 4E-24 8.6E-29 231.2 25.3 277 333-718 2-308 (374)
28 cd04951 GT1_WbdM_like This fam 99.9 7.5E-24 1.6E-28 224.3 26.6 277 334-721 1-301 (360)
29 PLN02846 digalactosyldiacylgly 99.9 2.3E-24 5E-29 241.9 23.6 301 331-711 3-328 (462)
30 cd03802 GT1_AviGT4_like This f 99.9 7.6E-24 1.6E-28 222.9 25.6 253 333-719 1-281 (335)
31 PRK15484 lipopolysaccharide 1, 99.9 6.8E-24 1.5E-28 232.9 26.1 264 334-710 4-304 (380)
32 cd04955 GT1_like_6 This family 99.9 2.7E-23 5.9E-28 220.7 29.0 281 334-721 1-307 (363)
33 cd03819 GT1_WavL_like This fam 99.9 2.1E-23 4.6E-28 221.2 27.7 263 347-717 8-299 (355)
34 cd03792 GT1_Trehalose_phosphor 99.9 6.1E-24 1.3E-28 230.7 20.7 272 334-717 1-308 (372)
35 cd03821 GT1_Bme6_like This fam 99.9 1.1E-22 2.4E-27 212.6 25.6 287 334-717 1-316 (375)
36 cd03818 GT1_ExpC_like This fam 99.9 1.4E-22 3.1E-27 222.3 26.2 292 334-717 1-335 (396)
37 KOG1111 N-acetylglucosaminyltr 99.9 7.3E-24 1.6E-28 224.6 14.3 282 333-719 1-308 (426)
38 cd03807 GT1_WbnK_like This fam 99.9 2.1E-22 4.6E-27 209.7 25.1 279 334-718 1-304 (365)
39 cd03795 GT1_like_4 This family 99.9 4.6E-22 9.9E-27 210.5 26.3 268 334-711 1-293 (357)
40 cd03817 GT1_UGDG_like This fam 99.9 6.1E-22 1.3E-26 207.4 25.3 280 334-711 1-306 (374)
41 PRK15179 Vi polysaccharide bio 99.9 8.1E-22 1.8E-26 231.1 28.8 292 329-710 277-618 (694)
42 cd03823 GT1_ExpE7_like This fa 99.9 1.5E-21 3.2E-26 204.3 26.0 276 334-717 1-298 (359)
43 PRK09922 UDP-D-galactose:(gluc 99.9 4.2E-22 9.1E-27 216.0 22.6 261 333-717 1-293 (359)
44 cd03825 GT1_wcfI_like This fam 99.9 1E-21 2.2E-26 208.5 23.7 268 333-717 1-299 (365)
45 PRK15427 colanic acid biosynth 99.9 5.7E-22 1.2E-26 220.0 22.6 185 459-710 116-331 (406)
46 cd03794 GT1_wbuB_like This fam 99.9 3.4E-21 7.4E-26 201.8 25.9 298 334-711 1-327 (394)
47 cd03814 GT1_like_2 This family 99.9 5.1E-21 1.1E-25 201.0 24.6 276 334-711 1-294 (364)
48 PLN02501 digalactosyldiacylgly 99.9 6.3E-21 1.4E-25 218.7 26.4 415 205-716 175-652 (794)
49 cd03809 GT1_mtfB_like This fam 99.9 2.7E-21 5.8E-26 203.6 21.4 281 334-718 1-308 (365)
50 cd03822 GT1_ecORF704_like This 99.9 2.1E-20 4.6E-25 196.9 25.2 264 334-712 1-298 (366)
51 cd03801 GT1_YqgM_like This fam 99.9 4.5E-20 9.7E-25 190.6 26.7 278 334-711 1-303 (374)
52 cd03811 GT1_WabH_like This fam 99.9 1.8E-20 3.9E-25 193.4 23.3 267 334-711 1-291 (353)
53 cd03816 GT1_ALG1_like This fam 99.9 2.4E-20 5.2E-25 207.3 25.9 288 334-711 5-345 (415)
54 cd03799 GT1_amsK_like This is 99.9 2.5E-20 5.5E-25 197.0 24.8 258 334-711 1-289 (355)
55 cd05844 GT1_like_7 Glycosyltra 99.9 8.4E-21 1.8E-25 203.0 21.2 267 334-711 1-298 (367)
56 cd03798 GT1_wlbH_like This fam 99.9 8.5E-20 1.8E-24 189.7 26.8 281 335-711 1-306 (377)
57 cd03808 GT1_cap1E_like This fa 99.9 9.8E-20 2.1E-24 188.8 27.0 272 334-716 1-297 (359)
58 cd03820 GT1_amsD_like This fam 99.9 4.3E-20 9.4E-25 190.6 24.2 256 334-711 1-280 (348)
59 PRK15490 Vi polysaccharide bio 99.8 9.8E-20 2.1E-24 206.7 23.7 210 450-720 271-521 (578)
60 PLN02275 transferase, transfer 99.8 4.8E-19 1E-23 193.9 24.3 271 348-710 14-336 (371)
61 cd03806 GT1_ALG11_like This fa 99.8 5E-19 1.1E-23 197.3 23.9 299 342-716 6-358 (419)
62 TIGR03087 stp1 sugar transfera 99.8 8.1E-20 1.8E-24 200.8 16.9 298 335-711 1-326 (397)
63 cd03813 GT1_like_3 This family 99.8 7.2E-19 1.6E-23 198.8 16.8 206 459-717 171-405 (475)
64 cd03804 GT1_wbaZ_like This fam 99.8 1.8E-17 4E-22 177.8 18.2 135 538-721 146-299 (351)
65 PHA01630 putative group 1 glyc 99.8 1.2E-17 2.7E-22 181.1 16.4 175 470-717 52-244 (331)
66 PHA01633 putative glycosyl tra 99.7 4.8E-17 1E-21 176.6 20.4 145 542-717 89-258 (335)
67 PLN02949 transferase, transfer 99.7 3.8E-16 8.2E-21 176.7 28.4 140 539-717 214-389 (463)
68 TIGR02918 accessory Sec system 99.7 5.1E-17 1.1E-21 185.3 17.5 199 459-720 209-442 (500)
69 PRK00726 murG undecaprenyldiph 99.7 5.6E-16 1.2E-20 167.6 21.3 258 333-712 2-277 (357)
70 PF05693 Glycogen_syn: Glycoge 99.7 3.7E-16 8.1E-21 177.1 17.5 281 338-658 2-320 (633)
71 cd03788 GT1_TPS Trehalose-6-Ph 99.7 2.8E-16 6E-21 177.6 16.4 221 444-709 114-386 (460)
72 TIGR01133 murG undecaprenyldip 99.7 2E-15 4.3E-20 161.7 21.0 254 333-711 1-274 (348)
73 cd03785 GT1_MurG MurG is an N- 99.7 4E-15 8.8E-20 159.4 21.9 256 334-711 1-276 (350)
74 cd04946 GT1_AmsK_like This fam 99.7 2.1E-15 4.6E-20 167.4 18.0 139 539-717 177-345 (407)
75 cd04949 GT1_gtfA_like This fam 99.6 4.3E-15 9.3E-20 160.5 16.8 186 460-711 98-306 (372)
76 TIGR02400 trehalose_OtsA alpha 99.6 4.5E-15 9.7E-20 167.7 17.1 212 461-717 127-394 (456)
77 cd01635 Glycosyltransferase_GT 99.5 2.8E-13 6E-18 133.0 19.0 82 637-718 109-217 (229)
78 PRK05749 3-deoxy-D-manno-octul 99.5 5.4E-13 1.2E-17 148.3 21.8 195 453-713 118-350 (425)
79 PRK13609 diacylglycerol glucos 99.5 1.9E-12 4.1E-17 141.6 23.8 270 331-711 3-297 (380)
80 PF13439 Glyco_transf_4: Glyco 99.5 6.2E-13 1.3E-17 126.4 15.6 174 339-593 4-177 (177)
81 PLN02605 monogalactosyldiacylg 99.5 8.1E-13 1.7E-17 145.4 18.1 191 449-711 90-306 (382)
82 PF13579 Glyco_trans_4_4: Glyc 99.5 4.9E-13 1.1E-17 125.0 13.0 160 349-586 1-160 (160)
83 PRK14501 putative bifunctional 99.4 9.8E-13 2.1E-17 156.6 15.8 210 461-715 133-398 (726)
84 PLN03063 alpha,alpha-trehalose 99.4 2.1E-12 4.5E-17 154.8 16.6 221 447-716 137-413 (797)
85 cd04950 GT1_like_1 Glycosyltra 99.3 4E-11 8.6E-16 131.6 16.8 185 458-712 99-307 (373)
86 PRK13608 diacylglycerol glucos 99.3 1.8E-10 3.9E-15 127.5 19.3 130 544-710 146-296 (391)
87 TIGR02398 gluc_glyc_Psyn gluco 99.2 2.9E-10 6.4E-15 129.3 18.3 213 461-718 132-421 (487)
88 PRK00025 lpxB lipid-A-disaccha 99.2 4.1E-10 8.9E-15 122.8 16.6 184 451-711 77-284 (380)
89 cd03786 GT1_UDP-GlcNAc_2-Epime 99.2 5.9E-10 1.3E-14 120.3 16.0 193 449-710 78-299 (363)
90 PF00534 Glycos_transf_1: Glyc 99.1 1.3E-10 2.8E-15 112.3 8.3 99 616-717 2-127 (172)
91 TIGR00236 wecB UDP-N-acetylglu 99.0 3.5E-09 7.5E-14 115.5 15.0 192 451-712 78-298 (365)
92 PLN03064 alpha,alpha-trehalose 98.9 2.9E-08 6.3E-13 120.0 16.9 212 461-717 231-498 (934)
93 TIGR00215 lpxB lipid-A-disacch 98.9 6.2E-08 1.3E-12 107.5 17.9 191 450-716 80-297 (385)
94 KOG0853 Glycosyltransferase [C 98.8 1.1E-07 2.4E-12 107.5 15.6 313 328-720 30-414 (495)
95 COG0438 RfaG Glycosyltransfera 98.7 1.6E-07 3.6E-12 95.2 14.8 135 545-717 150-311 (381)
96 PF09314 DUF1972: Domain of un 98.7 9E-07 1.9E-11 89.0 17.5 179 334-588 3-185 (185)
97 PF13477 Glyco_trans_4_2: Glyc 98.6 1.7E-06 3.7E-11 81.0 15.1 138 334-553 1-139 (139)
98 COG0058 GlgP Glucan phosphoryl 98.6 5E-07 1.1E-11 106.2 13.7 361 335-704 97-599 (750)
99 PRK09814 beta-1,6-galactofuran 98.5 1.8E-06 4E-11 93.6 15.3 177 459-712 61-265 (333)
100 cd04300 GT1_Glycogen_Phosphory 98.4 8E-06 1.7E-10 97.4 19.0 255 444-704 273-651 (797)
101 PRK14985 maltodextrin phosphor 98.4 1.6E-06 3.5E-11 102.7 12.5 252 444-704 275-650 (798)
102 PRK14986 glycogen phosphorylas 98.3 5.9E-06 1.3E-10 98.4 15.1 254 445-704 287-664 (815)
103 KOG3742 Glycogen synthase [Car 98.3 5.5E-07 1.2E-11 99.0 4.0 167 462-658 175-351 (692)
104 PRK12446 undecaprenyldiphospho 98.2 0.00016 3.5E-09 79.6 22.9 86 617-711 173-278 (352)
105 PF13692 Glyco_trans_1_4: Glyc 98.2 2.1E-06 4.6E-11 79.7 6.7 81 632-712 2-100 (135)
106 PF00862 Sucrose_synth: Sucros 98.1 7.2E-05 1.6E-09 84.5 16.6 245 305-596 249-531 (550)
107 TIGR02093 P_ylase glycogen/sta 98.1 3.3E-05 7.1E-10 92.0 13.4 254 445-704 271-648 (794)
108 KOG1387 Glycosyltransferase [C 98.0 0.00042 9.1E-09 75.1 18.7 212 459-724 148-399 (465)
109 PF00343 Phosphorylase: Carboh 97.8 5.9E-05 1.3E-09 89.0 9.2 254 445-704 188-565 (713)
110 PF00982 Glyco_transf_20: Glyc 97.8 0.0006 1.3E-08 78.2 16.6 214 447-704 127-393 (474)
111 PRK10117 trehalose-6-phosphate 97.7 0.0013 2.8E-08 75.2 17.4 210 447-706 113-374 (474)
112 COG0380 OtsA Trehalose-6-phosp 97.7 0.0017 3.6E-08 74.3 17.9 215 444-704 130-399 (486)
113 PLN02205 alpha,alpha-trehalose 97.5 0.0018 3.9E-08 79.1 17.0 214 446-705 189-457 (854)
114 COG0707 MurG UDP-N-acetylgluco 97.2 0.034 7.4E-07 61.7 20.6 114 348-500 10-124 (357)
115 KOG2941 Beta-1,4-mannosyltrans 97.0 0.17 3.7E-06 55.6 22.9 230 459-720 101-390 (444)
116 PF15070 GOLGA2L5: Putative go 97.0 0.058 1.3E-06 63.9 20.6 168 18-228 50-228 (617)
117 TIGR03713 acc_sec_asp1 accesso 96.8 0.0068 1.5E-07 70.4 11.1 85 633-719 320-472 (519)
118 PF04007 DUF354: Protein of un 96.8 0.18 4E-06 55.6 21.4 248 333-712 1-272 (335)
119 PHA02562 46 endonuclease subun 96.2 0.23 5E-06 57.8 18.7 63 66-128 215-281 (562)
120 PF09726 Macoilin: Transmembra 95.9 0.39 8.4E-06 57.9 19.1 94 21-125 421-518 (697)
121 KOG0971 Microtubule-associated 95.8 0.68 1.5E-05 55.9 19.9 129 17-189 338-473 (1243)
122 PF07888 CALCOCO1: Calcium bin 95.8 0.65 1.4E-05 54.1 19.3 138 70-226 156-307 (546)
123 TIGR00606 rad50 rad50. This fa 95.6 0.75 1.6E-05 59.5 21.3 27 105-131 795-821 (1311)
124 PRK02224 chromosome segregatio 95.6 0.34 7.3E-06 59.7 17.3 38 645-689 827-865 (880)
125 KOG4643 Uncharacterized coiled 95.5 1 2.3E-05 55.0 19.9 156 70-229 263-449 (1195)
126 KOG4643 Uncharacterized coiled 95.4 0.99 2.1E-05 55.2 19.3 106 127-235 395-514 (1195)
127 PRK11637 AmiB activator; Provi 95.3 1.4 3.1E-05 50.0 19.8 84 69-158 45-128 (428)
128 PLN03229 acetyl-coenzyme A car 95.2 0.89 1.9E-05 54.5 18.0 148 18-187 429-613 (762)
129 PRK01021 lpxB lipid-A-disaccha 95.1 2.3 5.1E-05 50.4 21.3 91 616-715 400-517 (608)
130 PRK11637 AmiB activator; Provi 95.1 2.9 6.3E-05 47.5 21.8 35 218-252 210-244 (428)
131 PF12000 Glyco_trans_4_3: Gkyc 95.1 0.22 4.7E-06 50.0 11.2 41 540-592 130-170 (171)
132 TIGR01005 eps_transp_fam exopo 95.0 5.8 0.00013 48.3 25.3 37 333-373 546-582 (754)
133 PF12718 Tropomyosin_1: Tropom 95.0 0.77 1.7E-05 44.7 14.3 102 134-235 1-106 (143)
134 TIGR02169 SMC_prok_A chromosom 94.9 2 4.4E-05 54.1 21.6 18 354-373 1030-1047(1164)
135 KOG4674 Uncharacterized conser 94.8 2.5 5.3E-05 55.3 21.7 178 66-252 999-1203(1822)
136 PF13528 Glyco_trans_1_3: Glyc 94.7 1.8 4E-05 46.0 17.8 68 631-709 192-272 (318)
137 PRK02224 chromosome segregatio 94.4 3.2 7E-05 51.3 21.3 14 145-158 319-332 (880)
138 TIGR00606 rad50 rad50. This fa 94.4 3.1 6.8E-05 53.9 21.8 94 70-166 842-935 (1311)
139 PRK03918 chromosome segregatio 94.4 5.2 0.00011 49.3 22.9 25 646-670 829-853 (880)
140 PF15070 GOLGA2L5: Putative go 94.3 2.2 4.9E-05 50.8 18.6 166 75-248 19-209 (617)
141 KOG0161 Myosin class II heavy 94.2 2.2 4.7E-05 56.5 19.5 103 62-164 976-1100(1930)
142 PF07888 CALCOCO1: Calcium bin 94.1 5.4 0.00012 46.7 20.7 167 68-240 203-395 (546)
143 TIGR03007 pepcterm_ChnLen poly 94.1 4.1 8.9E-05 46.9 20.1 19 19-37 162-180 (498)
144 PF12718 Tropomyosin_1: Tropom 94.1 3.9 8.3E-05 39.9 16.7 45 147-191 49-93 (143)
145 PRK09039 hypothetical protein; 94.0 1.1 2.4E-05 49.6 14.7 41 69-119 65-105 (343)
146 KOG4674 Uncharacterized conser 93.9 5.8 0.00013 52.1 22.2 210 8-233 1167-1425(1822)
147 PHA02562 46 endonuclease subun 93.9 3.3 7.2E-05 48.2 19.1 53 172-231 307-359 (562)
148 TIGR02919 accessory Sec system 93.9 0.29 6.3E-06 55.9 10.0 63 648-711 291-375 (438)
149 PF15294 Leu_zip: Leucine zipp 93.8 1.8 3.8E-05 46.6 15.0 90 64-164 125-214 (278)
150 KOG4673 Transcription factor T 93.8 3.2 6.9E-05 49.1 17.8 175 65-245 454-655 (961)
151 KOG0996 Structural maintenance 93.4 2.4 5.3E-05 52.8 16.8 86 12-132 772-857 (1293)
152 PRK04863 mukB cell division pr 93.4 8.7 0.00019 50.4 22.8 268 2-338 895-1188(1486)
153 KOG0976 Rho/Rac1-interacting s 93.3 5.7 0.00012 47.9 19.0 70 15-95 138-207 (1265)
154 TIGR02168 SMC_prok_B chromosom 93.2 12 0.00027 47.0 23.7 12 461-472 1111-1122(1179)
155 TIGR02168 SMC_prok_B chromosom 93.2 11 0.00025 47.3 23.4 11 23-33 703-713 (1179)
156 COG1196 Smc Chromosome segrega 93.1 10 0.00023 48.6 23.0 68 66-133 697-768 (1163)
157 KOG0161 Myosin class II heavy 93.0 6.2 0.00013 52.5 20.7 100 90-199 882-987 (1930)
158 PF08288 PIGA: PIGA (GPI ancho 92.8 0.29 6.2E-06 43.8 6.1 38 459-500 48-85 (90)
159 PF05701 WEMBL: Weak chloropla 92.8 4.3 9.3E-05 47.6 17.5 17 21-37 133-149 (522)
160 PRK03918 chromosome segregatio 92.7 7.6 0.00016 47.9 20.5 62 74-135 165-226 (880)
161 COG5185 HEC1 Protein involved 92.7 3.1 6.8E-05 47.3 15.1 138 60-231 260-397 (622)
162 PRK09841 cryptic autophosphory 92.6 20 0.00044 43.7 23.6 38 332-373 530-567 (726)
163 PRK04863 mukB cell division pr 92.6 11 0.00023 49.6 22.0 227 16-252 226-467 (1486)
164 KOG4360 Uncharacterized coiled 92.6 4.7 0.0001 46.4 16.5 139 66-252 161-304 (596)
165 PF01496 V_ATPase_I: V-type AT 92.6 0.28 6E-06 59.8 7.7 217 16-247 29-274 (759)
166 PF04849 HAP1_N: HAP1 N-termin 92.5 6.8 0.00015 42.8 17.2 34 66-99 162-195 (306)
167 TIGR03568 NeuC_NnaA UDP-N-acet 92.4 5 0.00011 44.6 16.8 28 679-711 277-304 (365)
168 COG4942 Membrane-bound metallo 92.4 12 0.00026 42.5 19.5 166 83-251 43-234 (420)
169 PF02684 LpxB: Lipid-A-disacch 92.4 2.8 6E-05 47.1 14.6 91 616-715 172-289 (373)
170 PF13851 GAS: Growth-arrest sp 92.4 4.4 9.4E-05 41.7 15.0 27 204-230 145-171 (201)
171 PF12128 DUF3584: Protein of u 92.2 17 0.00037 46.9 23.2 87 103-191 307-393 (1201)
172 TIGR02169 SMC_prok_A chromosom 92.2 8.5 0.00018 48.6 20.4 15 353-367 958-972 (1164)
173 KOG0977 Nuclear envelope prote 91.9 7 0.00015 45.8 17.4 154 19-188 57-214 (546)
174 TIGR01843 type_I_hlyD type I s 91.8 17 0.00037 40.4 20.2 15 364-378 325-339 (423)
175 PF14662 CCDC155: Coiled-coil 91.7 7.6 0.00016 39.6 15.3 112 68-185 26-144 (193)
176 KOG0995 Centromere-associated 91.5 7 0.00015 45.7 16.6 90 64-163 228-324 (581)
177 PF05622 HOOK: HOOK protein; 91.4 0.058 1.2E-06 65.1 0.0 179 66-248 195-384 (713)
178 COG0763 LpxB Lipid A disacchar 91.1 7.3 0.00016 43.8 15.8 94 615-715 174-293 (381)
179 PRK04778 septation ring format 91.0 6.6 0.00014 46.5 16.6 149 68-220 314-466 (569)
180 COG1196 Smc Chromosome segrega 91.0 24 0.00052 45.5 22.6 9 463-471 615-623 (1163)
181 TIGR03492 conserved hypothetic 91.0 8.2 0.00018 43.5 16.7 74 634-712 208-322 (396)
182 PF12128 DUF3584: Protein of u 90.9 7 0.00015 50.3 17.9 66 66-131 322-388 (1201)
183 KOG0980 Actin-binding protein 90.9 13 0.00028 45.6 18.4 127 75-216 414-544 (980)
184 PF00261 Tropomyosin: Tropomyo 90.9 23 0.0005 37.1 19.3 55 72-126 30-88 (237)
185 PLN02939 transferase, transfer 90.9 4.7 0.0001 50.3 15.4 115 71-191 257-371 (977)
186 COG0419 SbcC ATPase involved i 90.7 54 0.0012 41.1 27.5 21 344-364 812-832 (908)
187 KOG0612 Rho-associated, coiled 90.7 17 0.00036 46.1 19.6 125 119-244 584-710 (1317)
188 PRK09039 hypothetical protein; 90.6 7.2 0.00016 43.3 15.4 54 173-229 111-164 (343)
189 COG1579 Zn-ribbon protein, pos 90.6 8.2 0.00018 40.8 14.9 53 70-132 30-82 (239)
190 PF05701 WEMBL: Weak chloropla 90.5 21 0.00046 41.9 20.0 75 119-193 116-194 (522)
191 KOG0971 Microtubule-associated 90.4 38 0.00083 41.8 21.5 166 68-247 329-503 (1243)
192 PF09789 DUF2353: Uncharacteri 90.3 33 0.00072 37.9 21.5 192 65-296 66-282 (319)
193 PF00038 Filament: Intermediat 90.2 17 0.00036 39.3 17.6 28 208-235 261-288 (312)
194 COG0419 SbcC ATPase involved i 90.1 23 0.00049 44.4 20.9 64 83-146 230-304 (908)
195 PRK01156 chromosome segregatio 90.0 28 0.00061 43.3 21.5 60 68-127 215-274 (895)
196 KOG0977 Nuclear envelope prote 89.9 27 0.00058 41.2 19.6 125 72-228 57-181 (546)
197 PF09787 Golgin_A5: Golgin sub 89.7 12 0.00027 43.6 17.2 75 58-133 97-179 (511)
198 PF00038 Filament: Intermediat 89.6 33 0.00072 37.0 22.0 69 19-97 19-87 (312)
199 TIGR03185 DNA_S_dndD DNA sulfu 89.3 6.6 0.00014 47.2 14.9 27 102-128 391-417 (650)
200 PF15397 DUF4618: Domain of un 89.3 22 0.00048 38.1 17.0 71 82-160 60-133 (258)
201 TIGR03017 EpsF chain length de 89.3 42 0.00092 38.0 20.7 19 19-37 172-190 (444)
202 PRK11519 tyrosine kinase; Prov 89.2 28 0.0006 42.5 20.2 38 332-373 525-562 (719)
203 cd03784 GT1_Gtf_like This fami 89.1 1.8 3.8E-05 47.8 9.3 37 333-375 1-37 (401)
204 COG1579 Zn-ribbon protein, pos 88.8 7.9 0.00017 40.9 13.2 26 69-94 50-75 (239)
205 PRK01156 chromosome segregatio 88.8 42 0.00091 41.8 21.8 71 68-138 208-278 (895)
206 KOG0250 DNA repair protein RAD 88.7 32 0.00069 43.3 19.9 61 106-166 707-767 (1074)
207 PF13851 GAS: Growth-arrest sp 88.6 14 0.0003 38.0 14.7 58 135-192 102-164 (201)
208 KOG3156 Uncharacterized membra 88.2 2.3 5.1E-05 43.8 8.5 82 70-166 115-200 (220)
209 KOG0018 Structural maintenance 88.1 29 0.00063 43.5 18.8 179 63-247 682-901 (1141)
210 PF05622 HOOK: HOOK protein; 88.1 0.15 3.3E-06 61.6 0.0 22 68-89 456-477 (713)
211 KOG4673 Transcription factor T 87.8 33 0.00071 41.1 18.3 93 53-162 332-424 (961)
212 KOG0612 Rho-associated, coiled 87.8 18 0.00039 45.8 17.0 92 95-186 494-596 (1317)
213 PF06705 SF-assemblin: SF-asse 87.7 40 0.00086 35.5 18.7 126 83-216 39-164 (247)
214 PF09730 BicD: Microtubule-ass 87.3 20 0.00044 43.5 16.9 99 70-182 68-181 (717)
215 PF08614 ATG16: Autophagy prot 87.3 6.4 0.00014 40.0 11.3 64 171-237 123-186 (194)
216 PRK10361 DNA recombination pro 87.1 48 0.001 38.5 19.2 25 198-222 136-160 (475)
217 KOG1029 Endocytic adaptor prot 87.0 25 0.00055 42.6 16.9 51 99-153 403-457 (1118)
218 KOG0804 Cytoplasmic Zn-finger 86.9 9.4 0.0002 43.4 12.9 100 133-238 347-446 (493)
219 PF04012 PspA_IM30: PspA/IM30 86.3 19 0.00041 37.0 14.3 110 111-233 25-143 (221)
220 PF00261 Tropomyosin: Tropomyo 86.3 38 0.00082 35.6 16.6 82 101-188 77-158 (237)
221 KOG0243 Kinesin-like protein [ 85.9 37 0.0008 42.7 18.3 59 100-158 432-494 (1041)
222 TIGR02680 conserved hypothetic 85.8 90 0.0019 41.1 22.9 42 87-128 792-833 (1353)
223 KOG0964 Structural maintenance 85.7 11 0.00025 46.4 13.6 102 61-166 789-901 (1200)
224 KOG0994 Extracellular matrix g 85.6 87 0.0019 39.9 20.8 30 9-38 1493-1524(1758)
225 PF04912 Dynamitin: Dynamitin 85.5 34 0.00074 38.5 16.9 16 112-127 212-227 (388)
226 TIGR01000 bacteriocin_acc bact 85.5 36 0.00079 39.0 17.5 28 69-96 95-122 (457)
227 KOG0249 LAR-interacting protei 85.4 44 0.00096 40.3 17.7 152 73-243 134-285 (916)
228 PF05557 MAD: Mitotic checkpoi 85.1 0.27 5.8E-06 59.6 0.0 161 83-247 286-467 (722)
229 PF05557 MAD: Mitotic checkpoi 85.1 8.1 0.00017 47.0 12.5 157 65-241 462-638 (722)
230 KOG0933 Structural maintenance 84.9 72 0.0016 40.0 19.7 65 172-241 837-903 (1174)
231 KOG0243 Kinesin-like protein [ 84.5 34 0.00073 43.1 17.1 73 54-126 394-472 (1041)
232 PRK10929 putative mechanosensi 83.7 92 0.002 40.1 20.9 42 99-141 170-211 (1109)
233 KOG0250 DNA repair protein RAD 83.4 1.3E+02 0.0028 38.3 21.3 18 20-37 257-274 (1074)
234 PF09728 Taxilin: Myosin-like 83.3 77 0.0017 34.8 19.8 32 213-245 203-234 (309)
235 PF08317 Spc7: Spc7 kinetochor 83.3 6.8 0.00015 43.0 9.9 129 79-216 157-290 (325)
236 KOG0999 Microtubule-associated 83.2 41 0.00089 39.4 15.9 197 67-276 46-273 (772)
237 PF12761 End3: Actin cytoskele 82.6 3.9 8.5E-05 41.8 7.0 94 94-187 88-183 (195)
238 cd07667 BAR_SNX30 The Bin/Amph 82.5 72 0.0016 33.9 18.0 159 61-241 41-206 (240)
239 PF08317 Spc7: Spc7 kinetochor 82.0 23 0.00049 39.0 13.4 50 109-158 170-220 (325)
240 COG1842 PspA Phage shock prote 82.0 68 0.0015 33.7 16.1 119 111-234 26-145 (225)
241 TIGR03185 DNA_S_dndD DNA sulfu 81.9 44 0.00095 40.2 16.8 17 229-245 485-501 (650)
242 cd00176 SPEC Spectrin repeats, 81.7 32 0.0007 33.5 13.2 38 70-107 32-69 (213)
243 PLN03229 acetyl-coenzyme A car 81.6 80 0.0017 38.6 18.2 20 18-37 455-474 (762)
244 PF15619 Lebercilin: Ciliary p 81.4 49 0.0011 34.0 14.6 28 70-97 25-52 (194)
245 PF06008 Laminin_I: Laminin Do 81.4 79 0.0017 33.6 18.8 179 69-247 12-198 (264)
246 KOG0996 Structural maintenance 81.1 1.3E+02 0.0029 38.5 20.2 52 70-121 826-877 (1293)
247 PF07926 TPR_MLP1_2: TPR/MLP1/ 80.7 43 0.00094 32.0 13.2 41 114-154 40-80 (132)
248 PRK10698 phage shock protein P 80.6 47 0.001 34.7 14.5 119 112-235 27-146 (222)
249 PF05667 DUF812: Protein of un 80.2 1.2E+02 0.0026 36.5 19.2 27 69-95 333-359 (594)
250 PF09325 Vps5: Vps5 C terminal 80.1 75 0.0016 32.6 17.5 77 169-245 133-214 (236)
251 PF06160 EzrA: Septation ring 80.1 55 0.0012 38.8 16.5 38 206-243 268-305 (560)
252 PF07426 Dynactin_p22: Dynacti 80.0 25 0.00053 35.5 11.7 92 143-236 57-160 (174)
253 PF05667 DUF812: Protein of un 80.0 39 0.00085 40.4 15.2 52 71-125 328-379 (594)
254 PF10174 Cast: RIM-binding pro 80.0 50 0.0011 40.7 16.3 30 222-251 460-489 (775)
255 KOG0933 Structural maintenance 79.9 1.1E+02 0.0024 38.5 18.8 86 62-150 292-377 (1174)
256 KOG0978 E3 ubiquitin ligase in 79.8 1.6E+02 0.0034 36.0 20.3 152 65-225 434-596 (698)
257 TIGR00634 recN DNA repair prot 79.5 68 0.0015 38.0 17.1 16 107-122 187-202 (563)
258 KOG4809 Rab6 GTPase-interactin 79.5 30 0.00066 40.4 13.3 101 68-182 328-428 (654)
259 TIGR03590 PseG pseudaminic aci 79.4 5.6 0.00012 42.5 7.4 71 633-709 172-262 (279)
260 PRK09841 cryptic autophosphory 79.3 14 0.00031 45.0 11.6 128 19-202 268-395 (726)
261 smart00787 Spc7 Spc7 kinetocho 79.2 22 0.00047 39.2 11.9 35 107-141 163-197 (312)
262 PF07106 TBPIP: Tat binding pr 79.1 4.1 9E-05 40.4 5.8 98 22-123 30-137 (169)
263 KOG0963 Transcription factor/C 79.0 26 0.00056 41.5 12.8 101 15-133 246-347 (629)
264 PRK11281 hypothetical protein; 78.6 47 0.001 42.6 16.0 25 114-138 126-150 (1113)
265 KOG4677 Golgi integral membran 78.6 42 0.00092 38.4 13.8 162 59-236 297-468 (554)
266 TIGR03007 pepcterm_ChnLen poly 78.5 29 0.00063 40.0 13.4 28 208-235 354-381 (498)
267 COG0497 RecN ATPase involved i 77.8 39 0.00086 39.9 14.0 41 83-123 159-199 (557)
268 TIGR02977 phageshock_pspA phag 77.7 63 0.0014 33.5 14.3 119 112-235 27-146 (219)
269 KOG0976 Rho/Rac1-interacting s 77.3 54 0.0012 40.1 14.8 51 70-120 315-369 (1265)
270 PRK04778 septation ring format 77.1 1.7E+02 0.0036 34.9 21.4 166 15-196 137-307 (569)
271 PF04912 Dynamitin: Dynamitin 77.0 17 0.00037 41.0 10.6 168 65-234 88-279 (388)
272 PF07989 Microtub_assoc: Micro 76.8 6.3 0.00014 34.4 5.5 30 68-97 4-33 (75)
273 KOG0994 Extracellular matrix g 76.4 1.8E+02 0.0039 37.4 19.1 37 147-193 1542-1578(1758)
274 PF13949 ALIX_LYPXL_bnd: ALIX 76.4 1.1E+02 0.0024 32.5 20.2 50 80-129 79-132 (296)
275 PF10174 Cast: RIM-binding pro 75.9 2.1E+02 0.0046 35.5 20.9 15 20-34 247-261 (775)
276 PF09730 BicD: Microtubule-ass 75.5 74 0.0016 38.9 15.8 9 29-37 174-182 (717)
277 KOG0946 ER-Golgi vesicle-tethe 75.1 86 0.0019 38.6 15.8 37 199-235 845-881 (970)
278 TIGR01843 type_I_hlyD type I s 75.0 47 0.001 36.9 13.5 30 102-131 151-180 (423)
279 PF13514 AAA_27: AAA domain 74.9 2.4E+02 0.0052 36.4 21.2 17 19-35 674-690 (1111)
280 KOG4302 Microtubule-associated 74.6 72 0.0016 38.6 15.2 66 19-94 125-190 (660)
281 KOG0963 Transcription factor/C 74.6 2E+02 0.0043 34.5 18.7 56 73-130 151-210 (629)
282 PF10473 CENP-F_leu_zip: Leuci 74.5 44 0.00095 32.7 11.2 64 84-150 51-114 (140)
283 COG1340 Uncharacterized archae 74.4 1.4E+02 0.003 32.7 18.0 178 63-251 47-242 (294)
284 PRK11519 tyrosine kinase; Prov 74.1 26 0.00055 42.8 11.9 81 106-202 315-395 (719)
285 PF11559 ADIP: Afadin- and alp 74.1 37 0.00081 32.9 10.9 15 27-41 4-18 (151)
286 TIGR01010 BexC_CtrB_KpsE polys 74.0 18 0.0004 40.0 9.8 20 18-37 170-189 (362)
287 PF05911 DUF869: Plant protein 74.0 1.1E+02 0.0023 37.9 16.8 142 85-235 537-685 (769)
288 PF04100 Vps53_N: Vps53-like, 73.9 95 0.0021 35.1 15.5 111 68-192 22-133 (383)
289 TIGR01005 eps_transp_fam exopo 73.6 1.5E+02 0.0032 36.3 18.3 19 19-37 195-213 (754)
290 PF02951 GSH-S_N: Prokaryotic 73.5 4 8.6E-05 38.7 3.8 40 333-375 1-40 (119)
291 PF09726 Macoilin: Transmembra 73.3 94 0.002 38.0 16.1 21 207-227 543-563 (697)
292 PF11932 DUF3450: Protein of u 72.9 31 0.00067 36.4 10.8 28 98-125 38-65 (251)
293 PF07798 DUF1640: Protein of u 72.8 39 0.00084 33.9 10.9 96 22-168 55-159 (177)
294 KOG2273 Membrane coat complex 72.7 1.4E+02 0.0031 34.7 17.0 38 82-122 278-315 (503)
295 PF07407 Seadorna_VP6: Seadorn 72.6 11 0.00024 41.2 7.2 57 71-166 32-88 (420)
296 PF10186 Atg14: UV radiation r 72.4 69 0.0015 33.9 13.5 27 73-99 22-48 (302)
297 KOG2129 Uncharacterized conser 72.3 48 0.001 37.6 12.1 150 66-232 45-224 (552)
298 PF12325 TMF_TATA_bd: TATA ele 72.1 27 0.00058 33.2 8.9 51 108-158 43-93 (120)
299 TIGR00661 MJ1255 conserved hyp 72.0 28 0.00061 37.6 10.5 27 348-375 9-36 (321)
300 PRK10869 recombination and rep 71.4 1.8E+02 0.0038 34.6 17.6 15 207-221 294-308 (553)
301 PF04156 IncA: IncA protein; 71.3 48 0.001 33.2 11.3 35 96-130 82-116 (191)
302 PF15188 CCDC-167: Coiled-coil 71.0 7.2 0.00016 34.9 4.5 61 68-128 2-62 (85)
303 PF10473 CENP-F_leu_zip: Leuci 71.0 64 0.0014 31.6 11.4 89 68-159 7-106 (140)
304 smart00787 Spc7 Spc7 kinetocho 71.0 20 0.00043 39.4 9.0 37 109-145 232-268 (312)
305 KOG1850 Myosin-like coiled-coi 70.8 1.7E+02 0.0038 32.3 20.6 123 114-245 114-240 (391)
306 PF10267 Tmemb_cc2: Predicted 70.6 18 0.00039 41.0 8.7 50 61-112 209-258 (395)
307 PF13844 Glyco_transf_41: Glyc 70.5 6.8 0.00015 45.3 5.5 93 619-717 275-394 (468)
308 cd07619 BAR_Rich2 The Bin/Amph 70.3 45 0.00097 35.6 11.1 60 146-205 127-202 (248)
309 KOG0804 Cytoplasmic Zn-finger 70.1 4.1 8.9E-05 46.2 3.5 42 61-102 386-427 (493)
310 PF04012 PspA_IM30: PspA/IM30 69.7 1.4E+02 0.003 30.7 15.5 119 81-204 26-152 (221)
311 KOG3850 Predicted membrane pro 69.6 1.2E+02 0.0027 34.2 14.5 114 145-274 279-392 (455)
312 COG4913 Uncharacterized protei 69.5 68 0.0015 39.0 13.1 32 202-233 776-807 (1104)
313 PF10267 Tmemb_cc2: Predicted 69.5 76 0.0017 36.1 13.3 108 131-247 210-318 (395)
314 PRK10361 DNA recombination pro 68.5 1.4E+02 0.003 34.9 15.3 28 225-252 138-165 (475)
315 PRK11281 hypothetical protein; 68.4 92 0.002 40.1 15.1 51 195-245 397-453 (1113)
316 PF07083 DUF1351: Protein of u 68.3 1.6E+02 0.0034 30.7 15.4 182 83-287 20-206 (215)
317 PF12325 TMF_TATA_bd: TATA ele 68.2 25 0.00054 33.4 7.8 63 66-128 25-87 (120)
318 PF14915 CCDC144C: CCDC144C pr 68.1 1.9E+02 0.0042 31.7 19.9 86 9-122 17-108 (305)
319 PF06160 EzrA: Septation ring 68.0 2.5E+02 0.0055 33.4 17.9 64 68-131 310-373 (560)
320 PF09325 Vps5: Vps5 C terminal 67.6 1.5E+02 0.0033 30.3 16.2 35 84-121 30-64 (236)
321 PF05384 DegS: Sensor protein 67.5 74 0.0016 31.8 11.3 102 73-189 22-123 (159)
322 TIGR00998 8a0101 efflux pump m 67.4 93 0.002 33.6 13.4 14 364-377 256-269 (334)
323 PF04111 APG6: Autophagy prote 67.3 21 0.00046 39.2 8.3 57 68-124 13-72 (314)
324 PF14992 TMCO5: TMCO5 family 67.3 1.1E+02 0.0024 33.2 13.3 37 197-235 146-182 (280)
325 PF05010 TACC: Transforming ac 67.0 1.7E+02 0.0036 30.5 20.1 60 67-126 26-93 (207)
326 KOG4466 Component of histone d 66.8 1.4E+02 0.003 32.4 13.7 115 108-252 15-134 (291)
327 KOG0239 Kinesin (KAR3 subfamil 66.8 2E+02 0.0043 35.1 16.8 27 349-375 372-400 (670)
328 TIGR00634 recN DNA repair prot 66.8 1.7E+02 0.0037 34.7 16.2 28 145-172 271-298 (563)
329 cd09235 V_Alix Middle V-domain 66.8 2.1E+02 0.0046 31.7 16.5 30 224-253 289-318 (339)
330 PF11932 DUF3450: Protein of u 66.7 95 0.0021 32.7 12.8 8 460-467 236-243 (251)
331 PRK10884 SH3 domain-containing 66.6 83 0.0018 32.6 12.0 30 93-122 84-113 (206)
332 PF01975 SurE: Survival protei 66.5 7.7 0.00017 39.8 4.4 39 333-378 1-39 (196)
333 KOG0999 Microtubule-associated 66.5 42 0.00091 39.3 10.4 126 20-177 109-245 (772)
334 KOG0244 Kinesin-like protein [ 66.1 1.1E+02 0.0025 38.1 14.5 54 17-97 329-382 (913)
335 KOG1962 B-cell receptor-associ 66.1 26 0.00055 36.6 8.1 33 146-181 178-210 (216)
336 PF14362 DUF4407: Domain of un 65.4 98 0.0021 33.4 12.9 72 100-171 133-213 (301)
337 PRK11199 tyrA bifunctional cho 64.7 64 0.0014 36.2 11.7 27 349-375 105-131 (374)
338 COG4942 Membrane-bound metallo 64.7 2.7E+02 0.0058 32.1 16.7 48 84-131 34-81 (420)
339 COG4477 EzrA Negative regulato 64.5 3E+02 0.0065 32.6 17.5 59 68-126 313-371 (570)
340 COG2433 Uncharacterized conser 64.4 10 0.00023 44.6 5.4 61 65-125 430-490 (652)
341 TIGR02195 heptsyl_trn_II lipop 64.2 33 0.00071 37.1 9.1 94 616-715 161-280 (334)
342 KOG0964 Structural maintenance 64.1 1.6E+02 0.0034 37.2 15.0 57 102-161 314-370 (1200)
343 PF00804 Syntaxin: Syntaxin; 64.0 1E+02 0.0022 27.0 12.0 84 147-243 14-103 (103)
344 cd07627 BAR_Vps5p The Bin/Amph 64.0 1.8E+02 0.0039 30.0 18.9 38 208-245 156-194 (216)
345 PF10475 DUF2450: Protein of u 63.3 1.9E+02 0.004 31.3 14.5 61 170-231 80-140 (291)
346 cd07596 BAR_SNX The Bin/Amphip 63.1 1.7E+02 0.0036 29.2 17.4 40 207-246 157-197 (218)
347 KOG0978 E3 ubiquitin ligase in 63.1 3.6E+02 0.0078 33.1 19.6 21 133-153 314-334 (698)
348 PF13166 AAA_13: AAA domain 62.9 3.4E+02 0.0074 32.8 18.5 8 464-471 565-572 (712)
349 KOG4593 Mitotic checkpoint pro 62.6 3.6E+02 0.0078 32.9 20.4 32 133-164 165-196 (716)
350 TIGR02680 conserved hypothetic 62.5 4.5E+02 0.0098 34.8 20.1 9 661-669 1306-1314(1353)
351 PF02350 Epimerase_2: UDP-N-ac 62.1 1E+02 0.0022 34.2 12.5 61 645-711 197-281 (346)
352 TIGR03017 EpsF chain length de 61.9 2.8E+02 0.006 31.4 16.6 27 104-130 173-199 (444)
353 PF14644 DUF4456: Domain of un 61.6 1.5E+02 0.0032 30.6 12.8 42 147-190 29-70 (208)
354 PRK10476 multidrug resistance 61.6 1.3E+02 0.0028 33.0 13.2 12 364-375 260-271 (346)
355 KOG4438 Centromere-associated 60.8 3.1E+02 0.0067 31.6 16.4 117 68-188 198-330 (446)
356 COG3660 Predicted nucleoside-d 60.5 2.6E+02 0.0056 30.6 17.8 39 333-379 1-39 (329)
357 PF10186 Atg14: UV radiation r 60.5 2.3E+02 0.0049 29.9 15.7 19 70-88 26-44 (302)
358 TIGR01010 BexC_CtrB_KpsE polys 60.4 1.8E+02 0.0039 32.2 14.1 89 100-189 168-260 (362)
359 PF03033 Glyco_transf_28: Glyc 60.3 11 0.00024 34.9 4.0 27 349-375 7-35 (139)
360 PF15254 CCDC14: Coiled-coil d 59.9 4.2E+02 0.0091 32.8 19.3 34 69-102 385-418 (861)
361 COG1322 Predicted nuclease of 59.6 2E+02 0.0043 33.5 14.4 16 547-562 324-339 (448)
362 COG4026 Uncharacterized protei 59.0 56 0.0012 34.3 8.9 89 79-197 129-220 (290)
363 PF03915 AIP3: Actin interacti 58.9 2E+02 0.0044 33.1 14.3 81 65-163 152-236 (424)
364 PF09789 DUF2353: Uncharacteri 58.0 64 0.0014 35.7 9.7 173 13-185 21-210 (319)
365 KOG0962 DNA repair protein RAD 57.9 2.8E+02 0.006 36.2 16.3 51 114-164 800-850 (1294)
366 PF07106 TBPIP: Tat binding pr 57.6 35 0.00076 33.8 7.2 106 45-154 7-137 (169)
367 KOG0018 Structural maintenance 57.5 5.2E+02 0.011 33.2 19.7 120 106-233 778-901 (1141)
368 PF07926 TPR_MLP1_2: TPR/MLP1/ 57.4 1.8E+02 0.0039 27.7 14.3 118 106-233 7-129 (132)
369 PF04849 HAP1_N: HAP1 N-termin 57.4 73 0.0016 35.0 9.9 72 20-95 169-244 (306)
370 KOG0946 ER-Golgi vesicle-tethe 57.1 2.7E+02 0.0058 34.6 15.1 24 348-371 920-943 (970)
371 PRK05771 V-type ATP synthase s 57.0 44 0.00096 40.2 9.2 86 201-300 214-299 (646)
372 PF14073 Cep57_CLD: Centrosome 56.7 1.3E+02 0.0028 30.7 10.8 103 14-158 67-173 (178)
373 KOG0979 Structural maintenance 56.6 2.4E+02 0.0052 35.7 15.0 195 17-237 208-402 (1072)
374 PF06818 Fez1: Fez1; InterPro 56.6 2.5E+02 0.0054 29.2 13.8 20 19-38 11-30 (202)
375 PRK10884 SH3 domain-containing 56.2 1.3E+02 0.0028 31.2 11.2 9 243-251 162-170 (206)
376 TIGR03752 conj_TIGR03752 integ 56.1 93 0.002 36.1 10.9 66 169-247 78-143 (472)
377 KOG0995 Centromere-associated 55.5 4.3E+02 0.0093 31.6 19.1 73 64-136 294-366 (581)
378 PRK10698 phage shock protein P 54.9 2.7E+02 0.0059 29.1 15.6 96 106-206 56-155 (222)
379 COG4550 Predicted membrane pro 54.9 1.6E+02 0.0035 27.8 10.3 71 145-227 7-82 (120)
380 KOG4603 TBP-1 interacting prot 54.9 69 0.0015 32.4 8.4 79 103-184 94-172 (201)
381 PF12001 DUF3496: Domain of un 54.8 60 0.0013 30.6 7.6 71 111-202 2-73 (111)
382 PF12252 SidE: Dot/Icm substra 54.2 3.9E+02 0.0085 34.2 16.1 66 179-245 1286-1351(1439)
383 PF14775 NYD-SP28_assoc: Sperm 54.2 45 0.00098 27.8 6.1 44 189-232 14-59 (60)
384 PRK03598 putative efflux pump 53.7 1.8E+02 0.0039 31.7 12.6 43 177-219 127-169 (331)
385 cd00632 Prefoldin_beta Prefold 53.6 1.8E+02 0.0038 26.6 10.6 93 147-248 6-98 (105)
386 cd08915 V_Alix_like Protein-in 53.5 3.4E+02 0.0075 29.8 16.2 46 81-126 129-178 (342)
387 PF03904 DUF334: Domain of unk 53.0 3E+02 0.0066 29.1 13.5 52 165-216 57-111 (230)
388 COG1519 KdtA 3-deoxy-D-manno-o 52.9 81 0.0018 36.1 9.7 142 538-714 170-349 (419)
389 PF05659 RPW8: Arabidopsis bro 52.8 1E+02 0.0022 30.2 9.3 75 114-188 32-111 (147)
390 KOG4552 Vitamin-D-receptor int 52.7 1.9E+02 0.0041 30.1 11.4 108 76-216 9-120 (272)
391 PF13949 ALIX_LYPXL_bnd: ALIX 52.3 3.2E+02 0.0069 29.1 20.7 39 133-171 70-108 (296)
392 TIGR02977 phageshock_pspA phag 52.2 2.9E+02 0.0063 28.6 15.0 75 86-165 39-117 (219)
393 TIGR03794 NHPM_micro_HlyD NHPM 51.6 4E+02 0.0088 30.1 16.9 15 364-378 309-323 (421)
394 PF11997 DUF3492: Domain of un 51.4 28 0.0006 37.4 5.7 109 439-558 150-258 (268)
395 PF04124 Dor1: Dor1-like famil 51.2 3.8E+02 0.0082 29.6 16.3 56 70-125 6-62 (338)
396 PF14817 HAUS5: HAUS augmin-li 51.0 5.4E+02 0.012 31.3 17.5 38 205-245 435-472 (632)
397 PF06925 MGDG_synth: Monogalac 50.9 99 0.0022 30.2 9.1 18 545-562 137-154 (169)
398 PF09304 Cortex-I_coil: Cortex 50.4 2.2E+02 0.0048 26.7 10.7 21 169-189 56-76 (107)
399 PF13514 AAA_27: AAA domain 50.2 6.8E+02 0.015 32.3 19.0 57 66-122 152-208 (1111)
400 PF01576 Myosin_tail_1: Myosin 50.1 5.3 0.00012 49.6 0.0 25 221-245 568-592 (859)
401 PHA03392 egt ecdysteroid UDP-g 50.0 23 0.0005 41.4 5.2 39 333-376 21-59 (507)
402 PF02403 Seryl_tRNA_N: Seryl-t 50.0 30 0.00065 31.5 4.9 19 20-38 4-22 (108)
403 PRK10246 exonuclease subunit S 49.9 6.3E+02 0.014 32.5 18.1 162 76-248 189-357 (1047)
404 PF04899 MbeD_MobD: MbeD/MobD 49.8 60 0.0013 28.1 6.3 43 144-189 25-67 (70)
405 PRK10929 putative mechanosensi 49.7 6.4E+02 0.014 32.8 17.8 49 176-227 185-233 (1109)
406 COG3206 GumC Uncharacterized p 49.7 1.1E+02 0.0025 35.0 10.7 135 2-168 254-401 (458)
407 PF07334 IFP_35_N: Interferon- 49.2 12 0.00026 32.8 2.0 27 73-99 2-28 (76)
408 PLN02166 dTDP-glucose 4,6-dehy 48.8 22 0.00049 40.6 4.8 36 329-374 117-152 (436)
409 PF03568 Peptidase_C50: Peptid 48.8 1.1E+02 0.0025 34.4 10.3 34 133-166 58-91 (383)
410 PF08687 ASD2: Apx/Shroom doma 48.5 3.9E+02 0.0084 29.0 16.7 43 174-216 200-242 (264)
411 KOG0980 Actin-binding protein 48.4 6.6E+02 0.014 31.6 21.4 133 106-244 397-536 (980)
412 TIGR02132 phaR_Bmeg polyhydrox 47.8 52 0.0011 33.3 6.4 90 94-189 28-125 (189)
413 PF10146 zf-C4H2: Zinc finger- 47.7 1.2E+02 0.0026 32.0 9.5 46 89-134 19-64 (230)
414 KOG0239 Kinesin (KAR3 subfamil 47.7 3.2E+02 0.0069 33.4 14.2 26 78-103 175-200 (670)
415 PF10482 CtIP_N: Tumour-suppre 47.7 1.6E+02 0.0036 27.8 9.2 47 174-220 17-67 (120)
416 cd07672 F-BAR_PSTPIP2 The F-BA 47.6 3.7E+02 0.008 28.5 16.2 27 68-94 58-84 (240)
417 cd07623 BAR_SNX1_2 The Bin/Amp 47.6 3.5E+02 0.0075 28.1 18.1 82 163-245 115-200 (224)
418 cd00176 SPEC Spectrin repeats, 47.4 2.7E+02 0.0059 26.9 15.3 28 208-235 145-172 (213)
419 PRK00207 sulfur transfer compl 47.4 39 0.00085 32.2 5.4 38 333-373 1-39 (128)
420 KOG1103 Predicted coiled-coil 47.2 1.7E+02 0.0037 32.7 10.6 25 94-118 131-155 (561)
421 PF13524 Glyco_trans_1_2: Glyc 47.2 13 0.00027 32.3 1.9 30 686-715 1-30 (92)
422 PLN02778 3,5-epimerase/4-reduc 47.1 29 0.00062 37.3 5.0 37 326-372 3-39 (298)
423 PF09755 DUF2046: Uncharacteri 47.1 4.4E+02 0.0095 29.2 20.5 30 67-96 23-52 (310)
424 PF05325 DUF730: Protein of un 46.9 31 0.00067 31.5 4.3 48 68-118 68-115 (122)
425 PF08702 Fib_alpha: Fibrinogen 46.4 3E+02 0.0064 27.0 12.1 102 74-219 25-128 (146)
426 COG1817 Uncharacterized protei 46.1 4.7E+02 0.01 29.2 19.1 40 333-379 1-40 (346)
427 KOG1003 Actin filament-coating 46.0 3.6E+02 0.0079 28.0 13.3 115 134-252 12-134 (205)
428 cd07666 BAR_SNX7 The Bin/Amphi 46.0 4E+02 0.0087 28.4 16.0 67 169-245 154-221 (243)
429 KOG1937 Uncharacterized conser 45.9 5.4E+02 0.012 29.9 15.3 47 69-122 229-275 (521)
430 PF08614 ATG16: Autophagy prot 45.6 40 0.00086 34.3 5.5 91 63-153 73-171 (194)
431 PF04420 CHD5: CHD5-like prote 45.5 33 0.00071 34.0 4.7 57 74-130 36-94 (161)
432 KOG2391 Vacuolar sorting prote 45.4 2.3E+02 0.0051 31.6 11.4 94 205-308 245-338 (365)
433 TIGR01915 npdG NADPH-dependent 45.3 28 0.00061 35.7 4.4 26 349-374 7-32 (219)
434 PRK00286 xseA exodeoxyribonucl 45.0 2.8E+02 0.006 31.7 12.8 19 22-40 105-123 (438)
435 PF10168 Nup88: Nuclear pore c 44.9 4.8E+02 0.01 32.2 15.3 24 143-166 635-658 (717)
436 PF02994 Transposase_22: L1 tr 44.9 37 0.0008 38.2 5.6 18 177-194 178-195 (370)
437 PF13815 Dzip-like_N: Iguana/D 44.3 1.3E+02 0.0027 28.3 8.2 60 187-250 52-117 (118)
438 PF01920 Prefoldin_2: Prefoldi 44.3 98 0.0021 27.6 7.3 58 70-127 35-101 (106)
439 KOG3091 Nuclear pore complex, 43.8 2.6E+02 0.0056 32.8 11.9 115 60-191 323-448 (508)
440 COG4477 EzrA Negative regulato 43.7 6.3E+02 0.014 30.1 17.9 23 15-37 161-183 (570)
441 TIGR03794 NHPM_micro_HlyD NHPM 43.7 4.2E+02 0.0092 29.9 14.0 19 233-251 233-251 (421)
442 cd07647 F-BAR_PSTPIP The F-BAR 43.6 4.1E+02 0.0088 27.8 15.4 29 68-96 57-85 (239)
443 PLN00016 RNA-binding protein; 43.4 24 0.00051 39.1 3.8 39 331-375 51-89 (378)
444 PF04977 DivIC: Septum formati 42.8 30 0.00066 29.3 3.6 47 68-114 21-67 (80)
445 PF05278 PEARLI-4: Arabidopsis 42.6 1.3E+02 0.0029 32.4 9.0 30 4-33 152-181 (269)
446 PF10046 BLOC1_2: Biogenesis o 42.4 2.7E+02 0.0058 25.4 10.0 91 114-221 5-99 (99)
447 PRK13411 molecular chaperone D 42.3 1.1E+02 0.0024 37.0 9.4 43 83-125 503-545 (653)
448 PF04380 BMFP: Membrane fusoge 42.2 1.2E+02 0.0027 26.5 7.3 68 154-221 6-76 (79)
449 PF13870 DUF4201: Domain of un 41.9 3.6E+02 0.0079 26.8 13.1 37 70-106 5-41 (177)
450 PF06008 Laminin_I: Laminin Do 41.6 4.5E+02 0.0098 27.8 22.4 110 20-159 19-139 (264)
451 PF04111 APG6: Autophagy prote 41.5 3E+02 0.0066 30.3 11.9 27 349-375 173-201 (314)
452 PF05911 DUF869: Plant protein 41.4 3.2E+02 0.0069 33.9 13.0 53 74-126 585-641 (769)
453 PF09728 Taxilin: Myosin-like 41.4 5.2E+02 0.011 28.4 16.9 27 66-92 24-50 (309)
454 PF02183 HALZ: Homeobox associ 41.4 21 0.00046 28.1 2.1 26 69-94 17-42 (45)
455 TIGR02132 phaR_Bmeg polyhydrox 41.3 4.1E+02 0.0088 27.2 11.9 53 176-231 84-136 (189)
456 PF14932 HAUS-augmin3: HAUS au 41.0 4.7E+02 0.01 27.8 14.6 49 214-277 126-174 (256)
457 PF09787 Golgin_A5: Golgin sub 40.8 6.6E+02 0.014 29.5 19.7 55 133-187 274-329 (511)
458 PRK14151 heat shock protein Gr 40.7 3.9E+02 0.0085 27.1 11.6 23 223-245 95-117 (176)
459 PF14197 Cep57_CLD_2: Centroso 40.4 1.4E+02 0.003 25.7 7.1 64 75-158 2-65 (69)
460 PF06785 UPF0242: Uncharacteri 40.4 5.7E+02 0.012 28.6 14.4 140 66-244 49-190 (401)
461 COG1269 NtpI Archaeal/vacuolar 40.1 1.2E+02 0.0026 36.8 9.2 70 175-245 201-272 (660)
462 PF15619 Lebercilin: Ciliary p 40.0 4.3E+02 0.0094 27.1 15.5 89 146-243 67-159 (194)
463 PF06564 YhjQ: YhjQ protein; 39.8 35 0.00076 36.3 4.2 34 333-372 1-36 (243)
464 KOG0104 Molecular chaperones G 39.2 2.4E+02 0.0052 34.8 11.1 133 101-234 688-837 (902)
465 KOG1050 Trehalose-6-phosphate 39.1 2.5E+02 0.0053 34.7 11.6 74 631-704 275-393 (732)
466 PRK11020 hypothetical protein; 39.0 1.5E+02 0.0033 28.0 7.6 57 137-198 2-61 (118)
467 KOG1854 Mitochondrial inner me 39.0 7.9E+02 0.017 29.8 17.4 27 50-79 240-266 (657)
468 PF07058 Myosin_HC-like: Myosi 38.8 5.8E+02 0.013 28.3 14.1 51 114-164 40-90 (351)
469 cd07648 F-BAR_FCHO The F-BAR ( 38.8 4.9E+02 0.011 27.4 17.7 14 177-190 149-162 (261)
470 CHL00194 ycf39 Ycf39; Provisio 38.7 39 0.00084 36.3 4.5 28 348-375 6-33 (317)
471 COG0569 TrkA K+ transport syst 38.4 36 0.00078 35.4 4.0 26 350-375 7-32 (225)
472 COG0216 PrfA Protein chain rel 38.2 96 0.0021 34.6 7.2 61 63-124 32-98 (363)
473 PF03358 FMN_red: NADPH-depend 38.1 58 0.0013 30.9 5.1 40 333-375 1-40 (152)
474 PF10168 Nup88: Nuclear pore c 38.1 6.3E+02 0.014 31.2 14.9 58 169-227 605-664 (717)
475 TIGR01007 eps_fam capsular exo 37.9 50 0.0011 33.1 4.8 37 333-373 17-53 (204)
476 TIGR01380 glut_syn glutathione 37.8 31 0.00068 37.5 3.6 41 333-376 1-41 (312)
477 PRK08305 spoVFB dipicolinate s 37.6 61 0.0013 33.4 5.4 36 332-375 5-42 (196)
478 KOG0244 Kinesin-like protein [ 37.5 4.8E+02 0.01 32.9 13.5 108 66-194 703-810 (913)
479 PF03980 Nnf1: Nnf1 ; InterPr 37.4 2.7E+02 0.0058 25.5 9.2 67 169-235 25-106 (109)
480 PF10191 COG7: Golgi complex c 37.2 3E+02 0.0065 34.1 12.1 62 133-194 70-131 (766)
481 cd07664 BAR_SNX2 The Bin/Amphi 37.2 5.3E+02 0.011 27.3 15.3 190 15-246 26-225 (234)
482 PF11221 Med21: Subunit 21 of 37.1 4E+02 0.0086 25.9 11.3 30 147-176 3-32 (144)
483 PRK10037 cell division protein 36.7 44 0.00096 34.9 4.4 34 333-372 1-36 (250)
484 PF05600 DUF773: Protein of un 36.7 7.8E+02 0.017 29.1 15.7 124 111-244 364-491 (507)
485 PF09403 FadA: Adhesion protei 36.6 4E+02 0.0086 25.7 11.5 37 162-198 53-89 (126)
486 TIGR01000 bacteriocin_acc bact 36.6 7.1E+02 0.015 28.6 21.6 19 173-191 238-256 (457)
487 TIGR03090 SASP_tlp small, acid 36.3 1.4E+02 0.0031 25.8 6.4 52 146-216 7-58 (70)
488 KOG4809 Rab6 GTPase-interactin 35.8 8.3E+02 0.018 29.2 15.4 76 63-145 379-457 (654)
489 COG2910 Putative NADH-flavin r 35.6 48 0.001 34.2 4.1 37 333-379 1-37 (211)
490 COG3914 Spy Predicted O-linked 35.4 90 0.002 37.1 6.8 89 620-714 421-538 (620)
491 KOG0992 Uncharacterized conser 35.3 7.3E+02 0.016 29.4 13.6 159 23-219 170-328 (613)
492 PF03962 Mnd1: Mnd1 family; I 34.9 1.3E+02 0.0027 30.8 7.1 30 68-97 66-95 (188)
493 KOG1937 Uncharacterized conser 34.7 8E+02 0.017 28.6 19.1 43 87-136 233-275 (521)
494 cd07651 F-BAR_PombeCdc15_like 34.7 5.4E+02 0.012 26.7 16.9 51 69-119 58-110 (236)
495 PRK10869 recombination and rep 34.6 8.5E+02 0.019 28.9 17.2 23 145-167 266-288 (553)
496 PF14643 DUF4455: Domain of un 34.5 7.9E+02 0.017 28.5 16.5 75 167-245 362-436 (473)
497 TIGR02971 heterocyst_DevB ABC 34.4 5.5E+02 0.012 27.7 12.6 144 72-221 56-205 (327)
498 PF06401 Alpha-2-MRAP_C: Alpha 34.4 5.7E+02 0.012 26.9 13.5 134 25-188 24-203 (214)
499 PF04102 SlyX: SlyX; InterPro 34.3 59 0.0013 27.7 3.9 23 114-136 2-24 (69)
500 PF06156 DUF972: Protein of un 34.2 1.6E+02 0.0034 27.5 7.0 56 109-191 1-56 (107)
No 1
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.2e-160 Score=1399.61 Aligned_cols=691 Identities=72% Similarity=1.140 Sum_probs=641.9
Q ss_pred CcccchhhhhHHhhhhhhhHHHhHHHHHHHHHHHhhcccCcccchhhhhccCCCccchhcccCcccchhhHhhhhhhhhh
Q 004879 1 MRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTEN 80 (725)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (725)
|||||||+|+|+|+|+|+||+|||+|||||||||+++++++|+ .+|+|++||++||+||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~ 235 (977)
T PLN02939 177 MRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGL---------------------CVHSLSKELDVLKEEN 235 (977)
T ss_pred HHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhcccccccc---------------------ccccHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999754 5789999999999999
Q ss_pred ccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHh
Q 004879 81 LSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKAT 160 (725)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (725)
|+||+||++||++|++|++|+||+++|||||++|+++|+|||+||++||+||+||+||++|| |||||||||+||++||
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 313 (977)
T PLN02939 236 MLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDC--WWEKVENLQDLLDRAT 313 (977)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHH--HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998 9999999999999999
Q ss_pred hhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 004879 161 KQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQ 240 (725)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (725)
||+|+|+++|+||||||+|||+||+||+|++|||+++++. ++||||++++||||+++++||+|+++.|+++|++||
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (977)
T PLN02939 314 NQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKV----ELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQ 389 (977)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHH----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999966 999999999999999999999999999999999999
Q ss_pred HHhhhhHHhhhhhccCCCCCCCChHHHHHHHHHHhhhhhcccCChHHHHHHHHHHHhhcCCchhhhhhhhhhchhhHHHH
Q 004879 241 DTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLSTSEAKLLREMVWKRNGRIRDAYMECKEKNEHEAIST 320 (725)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (725)
++|++|++|+++++.++|+++|||+|||+||||||+|+|+++|+++||+.||+|||+|+.+++++|++|++++|+|++++
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~id~~~~~~~~~~~~a~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (977)
T PLN02939 390 DTLSKLKEESKKRSLEHPADDMPSEFWSRILLLIDGWLLEKKISNNDAKLLREMVWKRDGRIREAYLSCKGKNEREAVEN 469 (977)
T ss_pred HHHHHHHhhhhcccccCchhhCCHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHhhhhhHHHHHHHHhcCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCC
Q 004879 321 FLKLTSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDG 400 (725)
Q Consensus 321 ~~~~~~~~~~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g 400 (725)
|++|++++++++|||+|||+|++|++++||+|+|+.+|+++|+++||+|.||+|+|+++..+.+..++.....+..+|.|
T Consensus 470 ~~~~~~~~~~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g 549 (977)
T PLN02939 470 FLKLTLSGTSSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDG 549 (977)
T ss_pred HHHhccCCCCCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCcccChhhhhcccccceEEEEeecC
Confidence 99999999999999999999999999999999999999999999999999999999998654444444334445556777
Q ss_pred cceeeeeEeeeeCCeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHH
Q 004879 401 RLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYW 480 (725)
Q Consensus 401 ~~~~~rV~~~~v~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~ 480 (725)
..+.++||.+.++||++|||+++||+.||+|+.+||++||+.||+|||+++++++.+.+++|||||||||++++++|+|+
T Consensus 550 ~~~~~~v~~~~~~GV~vyfId~~~~~~fF~R~~iYg~~Dn~~RF~~FsrAaLe~~~~~~~~PDIIH~HDW~TaLV~pll~ 629 (977)
T PLN02939 550 NLFKNKIWTGTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALELLYQSGKKPDIIHCHDWQTAFVAPLYW 629 (977)
T ss_pred ceeEEEEEEEEECCeeEEEEecCCchhccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHH
Confidence 77778999999999999999987776699999999999999999999999999999888999999999999999989998
Q ss_pred HhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHH
Q 004879 481 DLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEV 560 (725)
Q Consensus 481 ~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev 560 (725)
..|+..++.++|+|+||||+.|||.++...+..||++++.++++++++++ +++++|++++++.+||.||||||+|++++
T Consensus 630 ~~y~~~~~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~-~~~~iN~LK~GIv~AD~VtTVSptYA~EI 708 (977)
T PLN02939 630 DLYAPKGFNSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDN-AHGRINVVKGAIVYSNIVTTVSPTYAQEV 708 (977)
T ss_pred HHHhhccCCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhc-cCCchHHHHHHHHhCCeeEeeeHHHHHHH
Confidence 77766566789999999999999999887788899999888778888765 67899999999999999999999999999
Q ss_pred HhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeec
Q 004879 561 RTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITR 640 (725)
Q Consensus 561 ~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGR 640 (725)
.. .+|+||+.++..+..|+.+||||||++.|+|.+|++++.+|++++++||..+|.++|+++|++..+++.|+|+||||
T Consensus 709 ~t-e~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d~pLIg~VGR 787 (977)
T PLN02939 709 RS-EGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCITR 787 (977)
T ss_pred HH-HhccchHHHhccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCcccccceEEEEeec
Confidence 88 78899999999999999999999999999999999999999999999999999999999999843346799999999
Q ss_pred CcCCCCHHHHHHHHHHhhcCCcEEEEEcCCCcccc----cH----------------------HHHHHhcCeEEEcCCcc
Q 004879 641 LVPQKGVHLIRHAIYRTLELGGQFILLGSSPVPHI----QV----------------------YPILLSSFSFLRKHIFN 694 (725)
Q Consensus 641 L~~qKGvdlLieA~~~L~~~~iqLVIvG~Gp~~~l----e~----------------------~~iyAaADIfVlPS~~E 694 (725)
++++||++++++|+..+.+.+++|+|+|+||.+.+ +. ..+|++||+||+||++|
T Consensus 788 L~~QKGiDlLleA~~~Ll~~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAaADIFLmPSr~E 867 (977)
T PLN02939 788 LVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAASDMFIIPSMFE 867 (977)
T ss_pred CCcccChHHHHHHHHHHhhcCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHhCCEEEECCCcc
Confidence 99999999999999988777899999999975321 10 16999999999999999
Q ss_pred cchHHHHHHcCCCc-cccCCCCCceee
Q 004879 695 ICNLYIKLGQGGDL-TVNNNCEPWLHH 720 (725)
Q Consensus 695 pfGLv~LEAMg~~~-~V~~~~~G~l~~ 720 (725)
|||+|++|||+++. ||...++|.-..
T Consensus 868 PfGLvqLEAMAyGtPPVVs~vGGL~Dt 894 (977)
T PLN02939 868 PCGLTQMIAMRYGSVPIVRKTGGLNDS 894 (977)
T ss_pred CCcHHHHHHHHCCCCEEEecCCCCcce
Confidence 99999999996653 344555555433
No 2
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=4.9e-59 Score=526.72 Aligned_cols=375 Identities=31% Similarity=0.508 Sum_probs=304.5
Q ss_pred CCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEe
Q 004879 330 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWV 409 (725)
Q Consensus 330 ~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~ 409 (725)
+++|||+||++|++|++|+||+|+++.+|+++|+++||+|.||+|.|+++... ...+... ..+..++.+ .+++|.
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~~~~~~-~~~~~~~-~~~~~~~~~---~~~~~~ 75 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYPAVLAG-IEDAEQV-HSFPDLFGG---PARLLA 75 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCcchhhh-hcCceEE-EEEeeeCCc---eEEEEE
Confidence 36799999999999999999999999999999999999999999999987421 1122111 111112222 367888
Q ss_pred eeeCCeeEEEeCCCCCCcccccCC-CCC------CCchhhhHHHHHHHHHHHHHHc--CCCceEEEECCCchhhHHHHHH
Q 004879 410 STIEGLPVYFIEPHHPDKFFWRGQ-FYG------EHDDFRRFSFFSRAALELLLQA--GKQPDIIHCHDWQTAFVAPLYW 480 (725)
Q Consensus 410 ~~v~GI~V~~I~~~~ps~~F~r~~-~Yg------~~dd~~r~~~FsravlelL~~~--~~kPDIIH~Hdw~sa~vapl~~ 480 (725)
...+|+++||++++. ||.|+. +|+ ++||..||++||+++++++... +++|||||||+|+++++ |.++
T Consensus 76 ~~~~~v~~~~~~~~~---~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~~~~pDIiH~Hdw~~~l~-~~~l 151 (485)
T PRK14099 76 ARAGGLDLFVLDAPH---LYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVPGFVPDIVHAHDWQAGLA-PAYL 151 (485)
T ss_pred EEeCCceEEEEeChH---hhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhccCCCCCEEEECCcHHHHH-HHHH
Confidence 888999999998543 788764 674 3589999999999999988763 67999999999999997 5555
Q ss_pred HhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHH
Q 004879 481 DLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEV 560 (725)
Q Consensus 481 ~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev 560 (725)
.. . ...++|+|+|+||+.|+|.++...+..+|+++..+. ++.++ +++.+|+++.++.+||.|+|||+++++++
T Consensus 152 ~~-~--~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~k~~i~~ad~vitVS~~~a~ei 224 (485)
T PRK14099 152 HY-S--GRPAPGTVFTIHNLAFQGQFPRELLGALGLPPSAFS-LDGVE---YYGGIGYLKAGLQLADRITTVSPTYALEI 224 (485)
T ss_pred Hh-C--CCCCCCEEEeCCCCCCCCcCCHHHHHHcCCChHHcC-chhhh---hCCCccHHHHHHHhcCeeeecChhHHHHH
Confidence 42 1 124689999999999999888777777787765432 23332 56678899999999999999999999999
Q ss_pred HhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeec
Q 004879 561 RTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITR 640 (725)
Q Consensus 561 ~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGR 640 (725)
....+|.|++.++..+..++.+|+||||++.|+|.+++.++.+|+.+++++|..+|..+|+++|++. +++.+++++|||
T Consensus 225 ~~~~~g~gl~~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~-~~~~~li~~VgR 303 (485)
T PRK14099 225 QGPEAGMGLDGLLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGLDP-DPDALLLGVISR 303 (485)
T ss_pred hcccCCcChHHHHHhhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcCCCc-ccCCcEEEEEec
Confidence 8766678888888777899999999999999999999999999999999999999999999999973 346789999999
Q ss_pred CcCCCCHHHHHHHHHHhhcCCcEEEEEcCCCcc---ccc-----------------HH---HHHHhcCeEEEcCCcccch
Q 004879 641 LVPQKGVHLIRHAIYRTLELGGQFILLGSSPVP---HIQ-----------------VY---PILLSSFSFLRKHIFNICN 697 (725)
Q Consensus 641 L~~qKGvdlLieA~~~L~~~~iqLVIvG~Gp~~---~le-----------------~~---~iyAaADIfVlPS~~EpfG 697 (725)
++++||++++++|+..+.+.+++|+|+|+|+.+ .++ .. .++++||+||+||++||||
T Consensus 304 L~~~KG~d~Li~A~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~~~a~aDifv~PS~~E~fG 383 (485)
T PRK14099 304 LSWQKGLDLLLEALPTLLGEGAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGYDEALAHLIQAGADALLVPSRFEPCG 383 (485)
T ss_pred CCccccHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHhcCCEEEECCccCCCc
Confidence 999999999999999988778999999998732 111 01 3457899999999999999
Q ss_pred HHHHHHcCCC-ccccCCCCCceeee
Q 004879 698 LYIKLGQGGD-LTVNNNCEPWLHHI 721 (725)
Q Consensus 698 Lv~LEAMg~~-~~V~~~~~G~l~~~ 721 (725)
++++|||+++ .||+..++|.-..|
T Consensus 384 l~~lEAma~G~ppVvs~~GGl~d~V 408 (485)
T PRK14099 384 LTQLCALRYGAVPVVARVGGLADTV 408 (485)
T ss_pred HHHHHHHHCCCCcEEeCCCCcccee
Confidence 9999999766 45556666654443
No 3
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=1.5e-58 Score=523.21 Aligned_cols=378 Identities=28% Similarity=0.475 Sum_probs=297.9
Q ss_pred CCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccc--ccc---ccccceeeeeccCCccee
Q 004879 330 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDR--IDD---LRALDVVVESYFDGRLFK 404 (725)
Q Consensus 330 ~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~--v~~---L~~l~~~i~~~f~g~~~~ 404 (725)
++.|||+|||+|++|++|+||+|+++.+|+++|+++||+|.||+|.|++..... ... +..+++. +.+...-
T Consensus 3 ~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 78 (489)
T PRK14098 3 RRNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYGTINDRKFRLHDVLRLSDIEVP----LKEKTDL 78 (489)
T ss_pred CCCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCCchhhhhhccccceEEEEEEEe----ecCeeEE
Confidence 456999999999999999999999999999999999999999999999875320 111 1111111 1111111
Q ss_pred eeeEeeee--CCeeEEEeCCCCCCcccccCCCCCC-------CchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhH
Q 004879 405 NKVWVSTI--EGLPVYFIEPHHPDKFFWRGQFYGE-------HDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFV 475 (725)
Q Consensus 405 ~rV~~~~v--~GI~V~~I~~~~ps~~F~r~~~Yg~-------~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~v 475 (725)
.+++.... .|+++|||+++ .||.|+.+|+. +||.+||.+||+++++++++.+++|||||||+|+++++
T Consensus 79 ~~~~~~~~~~~~v~~~~~~~~---~~f~r~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~~pDiiH~hdw~t~l~ 155 (489)
T PRK14098 79 LHVKVTALPSSKIQTYFLYNE---KYFKRNGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGWKPDIIHCHDWYAGLV 155 (489)
T ss_pred EEEEEecccCCCceEEEEeCH---HHcCCCCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHH
Confidence 12222222 36999999853 38999888964 49999999999999999988788999999999999998
Q ss_pred HHHHHHhhccC-CCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCH
Q 004879 476 APLYWDLYVPK-GLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSP 554 (725)
Q Consensus 476 apl~~~~ya~~-gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~ 554 (725)
+.++...+... .+.++|+|+|+||+.+||.++...+... ++...+ +.+. .+++.+|+++.++.+||.|||||+
T Consensus 156 ~~~l~~~~~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~-~~~~~~---~~~~--~~~~~~n~lk~~i~~ad~VitVS~ 229 (489)
T PRK14098 156 PLLLKTVYADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKL-LPEEVC---SGLH--REGDEVNMLYTGVEHADLLTTTSP 229 (489)
T ss_pred HHHHHHHhhhccccCCCCEEEEcCCCcccCCCCHHHHHHh-CCHHhh---hhhh--hcCCcccHHHHHHHhcCcceeeCH
Confidence 44333333211 2358999999999999998776544332 332221 1111 134678999999999999999999
Q ss_pred HHHHHHHhh-ccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCC
Q 004879 555 SYAQEVRTS-EGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKP 633 (725)
Q Consensus 555 ~~a~ev~~~-~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~p 633 (725)
+|++++... .+++|++.+|.....++.+||||||++.|+|.+++.++.+|+++++++|..+|..+++++|++. +++.|
T Consensus 230 ~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~lgl~~-~~~~~ 308 (489)
T PRK14098 230 RYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEVGLPF-DEETP 308 (489)
T ss_pred HHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHHHHhCCCC-ccCCC
Confidence 999999763 4567888888877899999999999999999999999999999999999999999999999984 45789
Q ss_pred EEEEeecCcCCCCHHHHHHHHHHhhcCCcEEEEEcCCCcc---cccH--------------------HHHHHhcCeEEEc
Q 004879 634 LVGCITRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPVP---HIQV--------------------YPILLSSFSFLRK 690 (725)
Q Consensus 634 lV~fVGRL~~qKGvdlLieA~~~L~~~~iqLVIvG~Gp~~---~le~--------------------~~iyAaADIfVlP 690 (725)
+|+|+||++++||++++++|+..+.+.+++|+|+|+|+.+ .+++ ..+|++||+|++|
T Consensus 309 ~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~aDi~l~P 388 (489)
T PRK14098 309 LVGVIINFDDFQGAELLAESLEKLVELDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAGLDMLLMP 388 (489)
T ss_pred EEEEeccccccCcHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHhCCEEEeC
Confidence 9999999999999999999999998778999999999742 1211 1799999999999
Q ss_pred CCcccchHHHHHHcCCCc-cccCCCCCceeee
Q 004879 691 HIFNICNLYIKLGQGGDL-TVNNNCEPWLHHI 721 (725)
Q Consensus 691 S~~EpfGLv~LEAMg~~~-~V~~~~~G~l~~~ 721 (725)
|++||||+++||||.++. ||...++|+...+
T Consensus 389 S~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v 420 (489)
T PRK14098 389 GKIESCGMLQMFAMSYGTIPVAYAGGGIVETI 420 (489)
T ss_pred CCCCCchHHHHHHHhCCCCeEEecCCCCceee
Confidence 999999999999997664 4556666665544
No 4
>PLN02316 synthase/transferase
Probab=100.00 E-value=1.4e-58 Score=550.02 Aligned_cols=406 Identities=43% Similarity=0.691 Sum_probs=314.1
Q ss_pred CChHHHHHHHHHHhhhhhc-------ccCChHHHHHHHHHHHhhcCCchhhhhhhhhhc---hhhHHHHhhhc-------
Q 004879 262 MPWEFWSRLLLIIDGWLLE-------KKLSTSEAKLLREMVWKRNGRIRDAYMECKEKN---EHEAISTFLKL------- 324 (725)
Q Consensus 262 ~~~~~~~~~ll~~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~------- 324 (725)
..+|+|.+.. +++|+.. +|...+++..+.. .-..+.|||++..... +....++-.++
T Consensus 506 ~~~ev~~~g~--~NrWth~~~~~~~~~m~~~~~g~~~~a----~v~vP~da~~mdfvFs~~~~g~~yDn~~~~dyh~~v~ 579 (1036)
T PLN02316 506 GKPEVWFRGS--FNRWTHRLGPLPPQKMVPADNGSHLKA----TVKVPLDAYMMDFVFSEKEEGGIFDNRNGLDYHIPVF 579 (1036)
T ss_pred CCceEEEEcc--ccCcCCCCCCCCceeeeecCCCceEEE----EEEccccceEEEEEEecCCCCCCcCCCCCcCCccccc
Confidence 4567777776 5778654 3334444432111 1235667998744433 33345444333
Q ss_pred cCCCCCCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccee
Q 004879 325 TSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFK 404 (725)
Q Consensus 325 ~~~~~~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~ 404 (725)
.+.++.+||||+|||+|++|++++||+|++|.+|+++|+++||+|.||+|.|+++....+..+.. .. .+..+. ..
T Consensus 580 g~~~~~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~~~---~~-~~~~~~-~~ 654 (1036)
T PLN02316 580 GGIAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDLHY---QR-SYSWGG-TE 654 (1036)
T ss_pred CCCCCCCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccceE---EE-EeccCC-EE
Confidence 35667889999999999999999999999999999999999999999999999864432222211 01 111222 24
Q ss_pred eeeEeeeeCCeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhc
Q 004879 405 NKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYV 484 (725)
Q Consensus 405 ~rV~~~~v~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya 484 (725)
++||.+.++|+++|||++.+ .+|.++.+|+++||+.||.+||+++++++++.+++|||||||+|++++++.+++..|.
T Consensus 655 ~~v~~~~~~GV~vyfl~~~~--~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~talva~llk~~~~ 732 (1036)
T PLN02316 655 IKVWFGKVEGLSVYFLEPQN--GMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSSAPVAWLFKDHYA 732 (1036)
T ss_pred EEEEEEEECCcEEEEEeccc--cccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHHhhh
Confidence 68999999999999999643 3899988999999999999999999999998888999999999999998655555454
Q ss_pred cCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhc
Q 004879 485 PKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSE 564 (725)
Q Consensus 485 ~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~ 564 (725)
..++.++|+|+|+||+.|++ +.++.++.+||.|||||++|++++....
T Consensus 733 ~~~~~~~p~V~TiHnl~~~~--------------------------------n~lk~~l~~AD~ViTVS~tya~EI~~~~ 780 (1036)
T PLN02316 733 HYGLSKARVVFTIHNLEFGA--------------------------------NHIGKAMAYADKATTVSPTYSREVSGNS 780 (1036)
T ss_pred hhccCCCCEEEEeCCcccch--------------------------------hHHHHHHHHCCEEEeCCHHHHHHHHhcc
Confidence 33456899999999975431 2245678899999999999999987521
Q ss_pred cCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccc-cchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcC
Q 004879 565 GGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDL-QGKAENKESIRKHLGLSSADARKPLVGCITRLVP 643 (725)
Q Consensus 565 ~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~-~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~ 643 (725)
.+..+..|+.+||||||++.|+|.+|+++|.+|+++++ .||..+|..+|+++|++. ++.|+|+|||||++
T Consensus 781 -------~l~~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~--~d~plVg~VGRL~~ 851 (1036)
T PLN02316 781 -------AIAPHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLGLKQ--ADLPLVGIITRLTH 851 (1036)
T ss_pred -------CcccccCCEEEEECCccccccCCcccccccccCCchhhhhhhhhhHHHHHHHhCCCc--ccCeEEEEEecccc
Confidence 12334689999999999999999999999999999886 799999999999999983 36799999999999
Q ss_pred CCCHHHHHHHHHHhhcCCcEEEEEcCCCccccc-------H---------------------HHHHHhcCeEEEcCCccc
Q 004879 644 QKGVHLIRHAIYRTLELGGQFILLGSSPVPHIQ-------V---------------------YPILLSSFSFLRKHIFNI 695 (725)
Q Consensus 644 qKGvdlLieA~~~L~~~~iqLVIvG~Gp~~~le-------~---------------------~~iyAaADIfVlPS~~Ep 695 (725)
+||+++|++|+..+++.+++|||+|+||++.++ . ..+|++||+||+||++||
T Consensus 852 qKGvdlLi~Al~~ll~~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~~EP 931 (1036)
T PLN02316 852 QKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEP 931 (1036)
T ss_pred ccCHHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCcccC
Confidence 999999999999988778999999999753210 0 069999999999999999
Q ss_pred chHHHHHHcCCCc-cccCCCCCceeee
Q 004879 696 CNLYIKLGQGGDL-TVNNNCEPWLHHI 721 (725)
Q Consensus 696 fGLv~LEAMg~~~-~V~~~~~G~l~~~ 721 (725)
||+|+||||.++. ||...++|+-..|
T Consensus 932 ~GLvqLEAMa~GtppVvs~vGGL~DtV 958 (1036)
T PLN02316 932 CGLTQLTAMRYGSIPVVRKTGGLFDTV 958 (1036)
T ss_pred ccHHHHHHHHcCCCeEEEcCCCcHhhc
Confidence 9999999996653 4445555554443
No 5
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=1.6e-56 Score=502.99 Aligned_cols=377 Identities=42% Similarity=0.669 Sum_probs=306.1
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeee
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 412 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v 412 (725)
|||++||+|++|++++||+|+++.+|+++|+++||+|+|++|.|++..... ............++.+..+.++||...+
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEV-DDQVKVVELVDLSVGPRTLYVKVFEGVV 79 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhhhh-ccCeEEEEEEEEeecCceeEEEEEEEEE
Confidence 899999999999999999999999999999999999999999999875421 1111111122233456667789999999
Q ss_pred CCeeEEEeCCCCCCcccccC-CCCC--CCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCC
Q 004879 413 EGLPVYFIEPHHPDKFFWRG-QFYG--EHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLN 489 (725)
Q Consensus 413 ~GI~V~~I~~~~ps~~F~r~-~~Yg--~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~ 489 (725)
+|+++|++++.. +|.|+ .+|+ +.|++.|+.+|++++++++++.+.+|||||||+|++++++.++...+. ..
T Consensus 80 ~~v~~~~i~~~~---~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~~~~DiiH~hdw~~~~~~~~l~~~~~---~~ 153 (473)
T TIGR02095 80 EGVPVYFIDNPS---LFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGLGWQPDVVHAHDWHTALVPALLKAVYR---PN 153 (473)
T ss_pred CCceEEEEECHH---HcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHHHHHHHHHhhcc---CC
Confidence 999999998642 68774 5898 678999999999999999988788999999999999997543333221 11
Q ss_pred CCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCc
Q 004879 490 SARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGL 569 (725)
Q Consensus 490 ~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL 569 (725)
++|+|+|+||+.++|.++...+..+|++...+. ...+. +++++++++.++.+||.|+|||+.+++++....++.|+
T Consensus 154 ~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~l 229 (473)
T TIGR02095 154 PIKTVFTIHNLAYQGVFPADDFSELGLPPEYFH-MEGLE---FYGRVNFLKGGIVYADRVTTVSPTYAREILTPEFGYGL 229 (473)
T ss_pred CCCEEEEcCCCccCCcCCHHHHHHcCCChHHcC-chhhh---cCCchHHHHHHHHhCCcCeecCHhHHHHhcCCcCCccc
Confidence 499999999999999887766666677654332 12222 44578999999999999999999999999876677788
Q ss_pred ccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHH
Q 004879 570 HSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHL 649 (725)
Q Consensus 570 ~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdl 649 (725)
+.++..++.++.+||||||.+.|+|..++.++.+|+++++++|..+|..+|+++|++. +++.|+|+|+||++++||+++
T Consensus 230 ~~~l~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~-~~~~~~i~~vGrl~~~Kg~~~ 308 (473)
T TIGR02095 230 DGVLKARSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELGLPV-DDDVPLFGVISRLTQQKGVDL 308 (473)
T ss_pred hhHHHhcCCCeEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcCCCc-cCCCCEEEEEecCccccChHH
Confidence 8777777889999999999999999999999999999999999999999999999984 346899999999999999999
Q ss_pred HHHHHHHhhcCCcEEEEEcCCCcc---cccH--------------------HHHHHhcCeEEEcCCcccchHHHHHHcCC
Q 004879 650 IRHAIYRTLELGGQFILLGSSPVP---HIQV--------------------YPILLSSFSFLRKHIFNICNLYIKLGQGG 706 (725)
Q Consensus 650 LieA~~~L~~~~iqLVIvG~Gp~~---~le~--------------------~~iyAaADIfVlPS~~EpfGLv~LEAMg~ 706 (725)
+++|+.++.+.+++|+|+|+|+.. .+++ ..+|++||++++||.+||||++++|||++
T Consensus 309 li~a~~~l~~~~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~ 388 (473)
T TIGR02095 309 LLAALPELLELGGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYAGADFILMPSRFEPCGLTQLYAMRY 388 (473)
T ss_pred HHHHHHHHHHcCcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHhCCEEEeCCCcCCcHHHHHHHHHC
Confidence 999999998778999999999521 1110 17999999999999999999999999966
Q ss_pred Ccc-ccCCCCCceeee
Q 004879 707 DLT-VNNNCEPWLHHI 721 (725)
Q Consensus 707 ~~~-V~~~~~G~l~~~ 721 (725)
+.| |..+++|+-..|
T Consensus 389 G~pvI~s~~gg~~e~v 404 (473)
T TIGR02095 389 GTVPIVRRTGGLADTV 404 (473)
T ss_pred CCCeEEccCCCccceE
Confidence 654 335555544433
No 6
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=9.2e-57 Score=505.08 Aligned_cols=369 Identities=36% Similarity=0.586 Sum_probs=300.4
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEee--
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVS-- 410 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~-- 410 (725)
|||+||++|++|++++||+|+++.+|+++|+++||+|+||+|.|++..... ...... .. . ..++||.+
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~~~~~~-~~~~~~---~~--~----~~~~~~~~~~ 70 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYPAIREKL-RDAQVV---GR--L----DLFTVLFGHL 70 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCcchhhhh-cCceEE---EE--e----eeEEEEEEeE
Confidence 899999999999999999999999999999999999999999998764321 111100 00 0 01456665
Q ss_pred eeCCeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCC
Q 004879 411 TIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNS 490 (725)
Q Consensus 411 ~v~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ 490 (725)
..+|+++|++++. .+|.++.+|++.|+..||.+|++++++++++.+.+|||||||+|++++++..+...| ..++.+
T Consensus 71 ~~~gv~v~~v~~~---~~~~~~~~y~~~d~~~r~~~f~~~~~~~~~~~~~~pDiiH~h~w~~~~~~~~l~~~~-~~~~~~ 146 (466)
T PRK00654 71 EGDGVPVYLIDAP---HLFDRPSGYGYPDNGERFAFFSWAAAEFAEGLDPRPDIVHAHDWHTGLIPALLKEKY-WRGYPD 146 (466)
T ss_pred EcCCceEEEEeCH---HHcCCCCCCCCcChHHHHHHHHHHHHHHHHhcCCCCceEEECCcHHHHHHHHHHHhh-hccCCC
Confidence 4589999999863 378888899988999999999999999998877899999999999999855444443 223457
Q ss_pred CcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcc
Q 004879 491 ARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLH 570 (725)
Q Consensus 491 ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~ 570 (725)
+|+|+|+||+.++|.++...+..+|++...+. .+.++ ++..+++++.++.+||.|+|||+.+++++....+|+||+
T Consensus 147 ~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~ 222 (466)
T PRK00654 147 IKTVFTIHNLAYQGLFPAEILGELGLPAEAFH-LEGLE---FYGQISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLE 222 (466)
T ss_pred CCEEEEcCCCcCCCcCCHHHHHHcCCChHHcC-chhhh---cCCcccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChH
Confidence 99999999999999887666666777655432 22222 345688999999999999999999999998766778888
Q ss_pred cccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHH
Q 004879 571 STLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 650 (725)
Q Consensus 571 ~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlL 650 (725)
..+..+..|+.+||||||.+.|+|.+++.++.+|+++++++|..+|..+|+++|+++ ++.|+|+|+||++++||++++
T Consensus 223 ~~~~~~~~ki~vI~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~--~~~~~i~~vGRl~~~KG~~~l 300 (466)
T PRK00654 223 GLLRARSGKLSGILNGIDYDIWNPETDPLLAANYSADDLEGKAENKRALQERFGLPD--DDAPLFAMVSRLTEQKGLDLV 300 (466)
T ss_pred HHHHhcccCceEecCCCCccccCCccCcccccccChhhhhchHHHHHHHHHHhCCCC--CCCcEEEEeeccccccChHHH
Confidence 777777889999999999999999999999999999999999999999999999983 467999999999999999999
Q ss_pred HHHHHHhhcCCcEEEEEcCCCcc---cccH--------------------HHHHHhcCeEEEcCCcccchHHHHHHcCCC
Q 004879 651 RHAIYRTLELGGQFILLGSSPVP---HIQV--------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGD 707 (725)
Q Consensus 651 ieA~~~L~~~~iqLVIvG~Gp~~---~le~--------------------~~iyAaADIfVlPS~~EpfGLv~LEAMg~~ 707 (725)
++|+.++.+.+++|+|+|+|+.. .+++ ..+|++||++|+||++||||++++|||+++
T Consensus 301 i~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G 380 (466)
T PRK00654 301 LEALPELLEQGGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYAGADMFLMPSRFEPCGLTQLYALRYG 380 (466)
T ss_pred HHHHHHHHhcCCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHhhCCEEEeCCCCCCchHHHHHHHHCC
Confidence 99999988778999999998632 1110 168999999999999999999999999666
Q ss_pred cc-ccCCCCCceeee
Q 004879 708 LT-VNNNCEPWLHHI 721 (725)
Q Consensus 708 ~~-V~~~~~G~l~~~ 721 (725)
.+ |..+++|.-..|
T Consensus 381 ~p~V~~~~gG~~e~v 395 (466)
T PRK00654 381 TLPIVRRTGGLADTV 395 (466)
T ss_pred CCEEEeCCCCcccee
Confidence 43 445555544433
No 7
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-55 Score=491.04 Aligned_cols=376 Identities=36% Similarity=0.539 Sum_probs=303.8
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccc-cccceeeeeccCCcceeeeeEeee
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDL-RALDVVVESYFDGRLFKNKVWVST 411 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L-~~l~~~i~~~f~g~~~~~rV~~~~ 411 (725)
|||+++|+|+.|++|+||+|+++..|.++|.+.||+|+|++|.|+.... ...+. +.+ ......+.+.....-+....
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g~~v~v~lP~y~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 78 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRGVDVRVLLPSYPKVQK-EWRDLLKVV-GKFGVLKGGRAQLFIVKEYG 78 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcCCeEEEEcCCchhhhh-hhcccccee-eEeeeeecccceEEEEEeec
Confidence 8999999999999999999999999999999999999999999994433 22221 111 00111112221111111222
Q ss_pred eCC-eeEEEeCCCCCCcccccC--CCCCCCchhhhHHHHHHHHHHHHHHcC--CCceEEEECCCchhhHHHHHHHhhccC
Q 004879 412 IEG-LPVYFIEPHHPDKFFWRG--QFYGEHDDFRRFSFFSRAALELLLQAG--KQPDIIHCHDWQTAFVAPLYWDLYVPK 486 (725)
Q Consensus 412 v~G-I~V~~I~~~~ps~~F~r~--~~Yg~~dd~~r~~~FsravlelL~~~~--~kPDIIH~Hdw~sa~vapl~~~~ya~~ 486 (725)
.+| ++.++++.++ +|.|. ..|++.|+..||.+|++++++++.... ..||||||||||++++ |.+.+..- .
T Consensus 79 ~~~~v~~~lid~~~---~f~r~~~~~~~~~d~~~Rf~~F~~a~~~~~~~~~~~~~pDIvH~hDWqt~L~-~~~lk~~~-~ 153 (487)
T COG0297 79 KDGGVDLYLIDNPA---LFKRPDSTLYGYYDNAERFAFFSLAAAELAPLGLISWLPDIVHAHDWQTGLL-PAYLKQRY-R 153 (487)
T ss_pred ccCCCcEEEecChh---hcCccccccCCCCcHHHHHHHHHHHHHHHhhhcCCCCCCCEEEeecHHHHHH-HHHHhhcc-c
Confidence 233 8999999533 78873 678888999999999999999886544 5899999999999998 55554311 1
Q ss_pred CCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccC
Q 004879 487 GLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGG 566 (725)
Q Consensus 487 gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g 566 (725)
+...+|+|+|+||+.|||.++......+|+|...+. .+.++ +.+.++++|.++.+||.|+||||+|++++..+++|
T Consensus 154 ~~~~i~tVfTIHNl~~qG~~~~~~~~~lgLp~~~~~-~~~l~---~~~~~~~lK~gi~~ad~vttVSptYa~Ei~t~~~g 229 (487)
T COG0297 154 SGYIIPTVFTIHNLAYQGLFRLQYLEELGLPFEAYA-SFGLE---FYGQISFLKGGLYYADAVTTVSPTYAGEIYTPEYG 229 (487)
T ss_pred ccccCCeEEEEeeceeecccchhhHHHhcCCHHHhh-hceee---ecCcchhhhhhheeccEEEEECHHHHHhhcccccc
Confidence 245899999999999999988666677899876654 44454 44678999999999999999999999999999999
Q ss_pred CCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCC
Q 004879 567 QGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKG 646 (725)
Q Consensus 567 ~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKG 646 (725)
+|++.+++....++.+|.||+|.+.|+|.+|+.++.+|+++++.+|..+|..|++++|++. +.+.|++++|||++.|||
T Consensus 230 ~gl~g~l~~~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~gL~~-~~~~pl~~~vsRl~~QKG 308 (487)
T COG0297 230 EGLEGLLSWRSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQERLGLDV-DLPGPLFGFVSRLTAQKG 308 (487)
T ss_pred ccchhhhhhccccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHHHhCCCC-CCCCcEEEEeeccccccc
Confidence 9999999988899999999999999999999999999999999889999999999999984 557799999999999999
Q ss_pred HHHHHHHHHHhhcCCcEEEEEcCCCcccccHH------------------------HHHHhcCeEEEcCCcccchHHHHH
Q 004879 647 VHLIRHAIYRTLELGGQFILLGSSPVPHIQVY------------------------PILLSSFSFLRKHIFNICNLYIKL 702 (725)
Q Consensus 647 vdlLieA~~~L~~~~iqLVIvG~Gp~~~le~~------------------------~iyAaADIfVlPS~~EpfGLv~LE 702 (725)
+|++++|+..+.+.+++||++|.| ++.++.. .+|++||++++||++||||+++|+
T Consensus 309 ~dl~~~~i~~~l~~~~~~vilG~g-d~~le~~~~~la~~~~~~~~~~i~~~~~la~~i~agaD~~lmPSrfEPcGL~ql~ 387 (487)
T COG0297 309 LDLLLEAIDELLEQGWQLVLLGTG-DPELEEALRALASRHPGRVLVVIGYDEPLAHLIYAGADVILMPSRFEPCGLTQLY 387 (487)
T ss_pred hhHHHHHHHHHHHhCceEEEEecC-cHHHHHHHHHHHHhcCceEEEEeeecHHHHHHHHhcCCEEEeCCcCcCCcHHHHH
Confidence 999999999999989999999999 4543321 899999999999999999999999
Q ss_pred HcCCC-ccccCCCCCceeee
Q 004879 703 GQGGD-LTVNNNCEPWLHHI 721 (725)
Q Consensus 703 AMg~~-~~V~~~~~G~l~~~ 721 (725)
||..+ .||...++|+-.+|
T Consensus 388 amryGtvpIv~~tGGLadTV 407 (487)
T COG0297 388 AMRYGTLPIVRETGGLADTV 407 (487)
T ss_pred HHHcCCcceEcccCCcccee
Confidence 99222 44556666665544
No 8
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=5.6e-53 Score=472.44 Aligned_cols=380 Identities=40% Similarity=0.619 Sum_probs=301.9
Q ss_pred eEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeC
Q 004879 334 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 413 (725)
Q Consensus 334 kILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~ 413 (725)
||+|||+|++|+.++||+|+++.+|+++|+++||+|+||+|.|++........+... .....++.+....+++|...++
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 79 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQLLVL-RLFGVPVGGRPEYVGVFELPVD 79 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhHhccCeEEE-EEEeeccCCceeEEEEEEEEeC
Confidence 699999999999999999999999999999999999999999998754321111111 1112234566677899999999
Q ss_pred CeeEEEeCCCCCCcccccCC-----CCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCC
Q 004879 414 GLPVYFIEPHHPDKFFWRGQ-----FYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGL 488 (725)
Q Consensus 414 GI~V~~I~~~~ps~~F~r~~-----~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl 488 (725)
|+++|+++++. +|.+.. .|++.++..++.+|++++++++++.+.+|||||||+|++++++..+...+....+
T Consensus 80 gv~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~pDviH~hd~~t~~~~~~l~~~~~~~~~ 156 (476)
T cd03791 80 GVPVYFLDNPD---YFDRPGLYDDSGYDYEDNAERFALFSRAALELLRRLGWKPDIIHCHDWHTGLVPALLKEKYADPFF 156 (476)
T ss_pred CceEEEEcChH---HcCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHhcCCCCcEEEECchHHHHHHHHHHHhhccccC
Confidence 99999998643 455433 4666788899999999999999987789999999999999875444333321123
Q ss_pred CCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCC
Q 004879 489 NSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQG 568 (725)
Q Consensus 489 ~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~G 568 (725)
.++|+|+|+||+.++|.++...+..++.+.... ....+..++..+++++.++.+||.|+|||+.+++++....+|+|
T Consensus 157 ~~~~~v~tiH~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~~~~~g 233 (476)
T cd03791 157 KNIKTVFTIHNLAYQGVFPLEALEDLGLPWEEL---FHIDGLEFYGQVNFLKAGIVYADAVTTVSPTYAREILTPEFGEG 233 (476)
T ss_pred CCCCEEEEeCCCCCCCCCCHHHHHHcCCCccch---hhhcccccCCcccHHHHHHHhcCcCeecCHhHHHHhCCCCCCcc
Confidence 589999999999999877765555444432111 11222235667889999999999999999999999988777888
Q ss_pred cccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHH
Q 004879 569 LHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVH 648 (725)
Q Consensus 569 L~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvd 648 (725)
++..+..+..++.+||||||.+.|+|..++.++.+|+.+++.+|..+|..+++++|++. +++.++|+|+||++++||++
T Consensus 234 l~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g~~~-~~~~~~i~~vGrl~~~Kg~~ 312 (476)
T cd03791 234 LDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAALQEELGLPV-DPDAPLFGFVGRLTEQKGID 312 (476)
T ss_pred hHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHHHHHcCCCc-CCCCCEEEEEeeccccccHH
Confidence 88877777789999999999999999999999999998888999999999999999962 35789999999999999999
Q ss_pred HHHHHHHHhhcCCcEEEEEcCCCccc---ccH--------------------HHHHHhcCeEEEcCCcccchHHHHHHcC
Q 004879 649 LIRHAIYRTLELGGQFILLGSSPVPH---IQV--------------------YPILLSSFSFLRKHIFNICNLYIKLGQG 705 (725)
Q Consensus 649 lLieA~~~L~~~~iqLVIvG~Gp~~~---le~--------------------~~iyAaADIfVlPS~~EpfGLv~LEAMg 705 (725)
++++|+..+.+.+++|+|+|+|+... +++ ..+|++||++++||++||||++++|||+
T Consensus 313 ~li~a~~~l~~~~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma 392 (476)
T cd03791 313 LLLEALPELLELGGQLVILGSGDPEYEEALRELAARYPGRVAVLIGYDEALAHLIYAGADFFLMPSRFEPCGLTQMYAMR 392 (476)
T ss_pred HHHHHHHHHHHcCcEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhCCEEECCCCCCCCcHHHHHHhh
Confidence 99999999887789999999986421 110 1799999999999999999999999996
Q ss_pred CCccc-cCCCCCceeee
Q 004879 706 GDLTV-NNNCEPWLHHI 721 (725)
Q Consensus 706 ~~~~V-~~~~~G~l~~~ 721 (725)
++.|| .++++|+-..|
T Consensus 393 ~G~pvI~~~~gg~~e~v 409 (476)
T cd03791 393 YGTVPIVRATGGLADTV 409 (476)
T ss_pred CCCCCEECcCCCccceE
Confidence 66543 35555544433
No 9
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=100.00 E-value=3e-36 Score=347.28 Aligned_cols=380 Identities=19% Similarity=0.187 Sum_probs=277.7
Q ss_pred EEEEcCcc-----CCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcc-cccc----------cc--ccc------
Q 004879 335 VIHIAAEM-----APVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQY-DRID----------DL--RAL------ 390 (725)
Q Consensus 335 ILhIs~E~-----~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~-~~v~----------~L--~~l------ 390 (725)
|+++|+|| .|. ..||+|+...+-.++++..|.....++-.|...-- +.+. .. ..+
T Consensus 1 ~ayf~~E~g~~~~~p~-ysGGLG~LAgd~l~saa~l~~p~~g~gl~Y~~Gyf~Q~i~~~g~Q~e~~~~~~~~~~p~~~~~ 79 (601)
T TIGR02094 1 VAYFSMEYGLHESLPI-YSGGLGVLAGDHLKSASDLGLPLVAVGLLYKQGYFRQRLDEDGWQQEAYPNNDFESLPIEKVL 79 (601)
T ss_pred CeEEeeccccCCCCCc-cCchHHHHHHHHHHHHHhCCCCeEEEEeccCCCceeEEECCCCceeecCCccccCCCceEEEe
Confidence 56778886 365 68999999999999999999999999866554311 0010 00 000
Q ss_pred -----ceeeeeccCCcceeeeeEeeeeCCeeEEEeCCCCCC-cccccC---CCCCCCchhhh---HHHHHHHHHHHHHHc
Q 004879 391 -----DVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPD-KFFWRG---QFYGEHDDFRR---FSFFSRAALELLLQA 458 (725)
Q Consensus 391 -----~~~i~~~f~g~~~~~rV~~~~v~GI~V~~I~~~~ps-~~F~r~---~~Yg~~dd~~r---~~~FsravlelL~~~ 458 (725)
.+++...+.|+...+++|...++++++|++++..|. .+|.|. ..|+. |...| +.+|++++++.++..
T Consensus 80 ~~~g~~~~~~v~i~g~~~~~rlw~~~~~~v~lylld~~~~~n~~~~R~it~~LY~~-D~~~R~~Qe~fl~~a~l~~l~~l 158 (601)
T TIGR02094 80 DTDGKWLKISVRIRGRDVYAKVWRVQVGRVPLYLLDTNIPENSEDDRWITGRLYGG-DKEMRIAQEIVLGIGGVRALRAL 158 (601)
T ss_pred cCCCCeEEEEEecCCcEEEEEEEEEEeCCCCEEEecCCCcccchhhcCccCCCCCC-CHHHHHHHHHHHHHHHHHHHHHc
Confidence 011222345566678999998899999999976432 356665 46864 33444 599999999999888
Q ss_pred CCCceEEEECCCchhhHHHHHHHhhccCC--------CCCCcEEEEeeCCcccCC--CChhhhh--------hcCCcccc
Q 004879 459 GKQPDIIHCHDWQTAFVAPLYWDLYVPKG--------LNSARVCFTCHNFEYQGT--APAKELA--------SCGLDVQQ 520 (725)
Q Consensus 459 ~~kPDIIH~Hdw~sa~vapl~~~~ya~~g--------l~~ipiV~TiHn~~~qg~--~p~~~l~--------~~Gl~~~~ 520 (725)
+.+||||||||||++++++.+.......+ ..+.++|+|+||..++|. +|.+.+. .+|++...
T Consensus 159 ~~~pdviH~ND~Htal~~~el~r~l~~~~~~~~~a~~~~~~~~vfTiHt~~~qG~e~f~~~~~~~~~~~~~~~~gl~~~~ 238 (601)
T TIGR02094 159 GIDPDVYHLNEGHAAFVTLERIRELIAQGLSFEEAWEAVRKSSLFTTHTPVPAGHDVFPEDLMRKYFGDYAANLGLPREQ 238 (601)
T ss_pred CCCceEEEeCCchHHHHHHHHHHHHHHcCCCHHHHHHhcCCeEEEeCCCchHHHhhhcCHHHHHHHhhhhhhHhCCCHHH
Confidence 89999999999999998544322111000 125789999999999997 8866553 36777655
Q ss_pred cCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchh
Q 004879 521 LNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFL 600 (725)
Q Consensus 521 l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l 600 (725)
+.... .+....++.+|+++.|+.+||.|+|||+.+++-... -++ .+.+.+.....++..|.||||...|+|.+++.+
T Consensus 239 ~~~~~-~~~~~~~~~vnm~~lai~~S~~vngVS~lh~~v~~~-l~~-~l~~~~~~~~~~i~gItNGId~~~W~~~~~~~l 315 (601)
T TIGR02094 239 LLALG-RENPDDPEPFNMTVLALRLSRIANGVSKLHGEVSRK-MWQ-FLYPGYEEEEVPIGYVTNGVHNPTWVAPELRDL 315 (601)
T ss_pred HHhhh-hhccCccCceeHHHHHHHhCCeeeeecHHHHHHHHH-HHH-hhhhhcccccCCccceeCCccccccCCHHHHHH
Confidence 43221 211001357899999999999999999999873321 111 122233444567999999999999999999999
Q ss_pred hhccCccc----------------------ccchhhhHHHHHH---------------------HcCCCCCCCCCCEEEE
Q 004879 601 KVQYNAND----------------------LQGKAENKESIRK---------------------HLGLSSADARKPLVGC 637 (725)
Q Consensus 601 ~~~ys~~d----------------------~~gK~~~K~aLRk---------------------~lGL~~~d~~~plV~f 637 (725)
+.+|..++ +++|..+|.+|.+ ++|++ .+++.|+++|
T Consensus 316 ~~~y~~~~w~~~~~~~~~~~~~~~~~~~~l~~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~gl~-~dpd~~~ig~ 394 (601)
T TIGR02094 316 YERYLGENWRELLADEELWEAIDDIPDEELWEVHLKLKARLIDYIRRRLRERWLRRGADAAILMATDRF-LDPDVLTIGF 394 (601)
T ss_pred HHHhCCcchhccchhhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhhhhhccc-cCCCCcEEEE
Confidence 99998877 4899999999987 45654 3678899999
Q ss_pred eecCcCCCCHHHHHHHHHHhhc------CCcEEEEEcCCCccc-----ccH--------------------------HHH
Q 004879 638 ITRLVPQKGVHLIRHAIYRTLE------LGGQFILLGSSPVPH-----IQV--------------------------YPI 680 (725)
Q Consensus 638 VGRL~~qKGvdlLieA~~~L~~------~~iqLVIvG~Gp~~~-----le~--------------------------~~i 680 (725)
++|++.+||++++++++.++.+ .+++||++|.|...+ +.+ ..+
T Consensus 395 v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~f~~~Yd~~lA~~i 474 (601)
T TIGR02094 395 ARRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIVFLENYDINLARYL 474 (601)
T ss_pred EEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEEEEcCCCHHHHHHH
Confidence 9999999999999999998863 579999999986331 111 189
Q ss_pred HHhcCeEEE-cCC-cccchHHHHHHc---CCCccccC--------CCCCceee
Q 004879 681 LLSSFSFLR-KHI-FNICNLYIKLGQ---GGDLTVNN--------NCEPWLHH 720 (725)
Q Consensus 681 yAaADIfVl-PS~-~EpfGLv~LEAM---g~~~~V~~--------~~~G~l~~ 720 (725)
+++||++++ ||+ +||||+++|.|| |+.++|.+ +.|||.+.
T Consensus 475 ~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E~~~~~nGf~f~ 527 (601)
T TIGR02094 475 VSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGEGYDGDNGWAIG 527 (601)
T ss_pred hhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCcccccCCCCcEEEEC
Confidence 999999999 999 999999999999 44556655 46788775
No 10
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=100.00 E-value=5.2e-38 Score=326.34 Aligned_cols=229 Identities=44% Similarity=0.763 Sum_probs=170.8
Q ss_pred eEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccc--ccccccc------ceeeeeccCCcceee
Q 004879 334 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDR--IDDLRAL------DVVVESYFDGRLFKN 405 (725)
Q Consensus 334 kILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~--v~~L~~l------~~~i~~~f~g~~~~~ 405 (725)
||+|+|+|++|++++||+|+++.+|+++|+++||+|.||+|.|++..... ...+..+ .+++. . ...+
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y~~~~~~~~~~~~~~~~~~~~~~~v~~~----~-~~~~ 75 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKYGFIDEEYFQLEPVRRLSVPFGGPVPVG----V-WYEV 75 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-THHHHHHCTTEEEEEEES-STTCEEEEE---------E
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccchhhhhhhhcceEEEEeccccccccccc----c-ceEE
Confidence 79999999999999999999999999999999999999999998765431 1111111 11111 1 1457
Q ss_pred eeEeeeeCCeeEEEeCCCCCCcccccCCCCCC-----CchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHH
Q 004879 406 KVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGE-----HDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYW 480 (725)
Q Consensus 406 rV~~~~v~GI~V~~I~~~~ps~~F~r~~~Yg~-----~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~ 480 (725)
++|+...+|+++|+++++ .+|.|+.+|+. .|+..||++||+++++++++.+++||||||||||+++++ .++
T Consensus 76 ~v~~~~~~~v~v~~i~~~---~~f~r~~iY~~~~~~~~d~~~rf~~fs~a~le~~~~l~~~pDIIH~hDW~tal~p-~~l 151 (245)
T PF08323_consen 76 RVYRYPVDGVPVYFIDNP---EYFDRPGIYGDNGGDYPDNAERFAFFSRAALELLKKLGWKPDIIHCHDWHTALAP-LYL 151 (245)
T ss_dssp EEEEEEETTEEEEEEESH---HHHGSSSSSBSTSSBHTTHHHHHHHHHHHHHHHHCTCT-S-SEEEEECGGGTTHH-HHH
T ss_pred EEEEEEcCCccEEEecCh---hhccccceeccCCCcchhHHHHHHHHHHHHHHHHHhhCCCCCEEEecCchHHHHH-HHh
Confidence 889988999999999864 38888889965 689999999999999999987789999999999999984 554
Q ss_pred Hh-hccC-CCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHH
Q 004879 481 DL-YVPK-GLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQ 558 (725)
Q Consensus 481 ~~-ya~~-gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ 558 (725)
+. +... .+.++|+|+|+||..|||.++...+..+|++...+..++.++ +++.+|+++.|+.+||+|+||||+|++
T Consensus 152 k~~~~~~~~~~~~~~v~TIHN~~yqg~~~~~~~~~~gl~~~~~~~~~~~~---~~~~in~lk~gi~~AD~v~TVS~~Ya~ 228 (245)
T PF08323_consen 152 KERYQQDPFFANIPTVFTIHNLEYQGIFPPEDLKALGLPDEYFQNLDEYE---FYGQINFLKAGIVYADKVTTVSPTYAR 228 (245)
T ss_dssp HHCCSS------SEEEEEESSTT---EEEGGGGGCTT-GGGGS-STTTTE---ETTEEEHHHHHHHHSSEEEESSHHHHH
T ss_pred ccccccccccccceeEEEEcccccCCcCCHHHHHHcCCCHHHhccccccc---cccccCHHHHHHHhcCEeeeCCHHHHH
Confidence 43 3222 345799999999999999998877778899876554444444 678999999999999999999999999
Q ss_pred HHHhhccCCCcccccc
Q 004879 559 EVRTSEGGQGLHSTLN 574 (725)
Q Consensus 559 ev~~~~~g~GL~~~l~ 574 (725)
++.++.+|.||+.+|+
T Consensus 229 Ei~~~~~g~GL~~~l~ 244 (245)
T PF08323_consen 229 EIQTPEFGEGLEGLLR 244 (245)
T ss_dssp HTTSHHHHTT-HHHHH
T ss_pred HHhCcccCCChHHHhc
Confidence 9999888889987763
No 11
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=100.00 E-value=9.3e-32 Score=315.58 Aligned_cols=378 Identities=19% Similarity=0.217 Sum_probs=268.5
Q ss_pred eEEEEcCcc-----CCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCC--cc----cc--c---cc--cccc-----
Q 004879 334 HVIHIAAEM-----APVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCM--QY----DR--I---DD--LRAL----- 390 (725)
Q Consensus 334 kILhIs~E~-----~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l--~~----~~--v---~~--L~~l----- 390 (725)
.|+++|.|| .|. ..||+|+...+-.++++..|..+.-|.-.|... .+ +. . .. ...+
T Consensus 87 ~~aYFs~E~gl~~~lpi-YsGGLG~LAgd~lksasdLg~P~vgvGllY~~GyF~Q~i~~dG~Q~e~~~~~~~~~~p~~~~ 165 (778)
T cd04299 87 VAAYFSMEFGLHESLPI-YSGGLGILAGDHLKAASDLGLPLVGVGLLYRQGYFRQRLDADGWQQETYPVNDFEQLPLEPV 165 (778)
T ss_pred eeEEeccccccCCCCCc-cCchHHHHHHHHHHHHHhCCCCEEEEEeCcCCCCeEEEECCCCceeecCCCcCCCCCceEEE
Confidence 455999998 465 689999999999999999999999997665432 11 00 0 00 0000
Q ss_pred ------ceeeeeccCCcceeeeeEeeeeCCeeEEEeCCCCCC-cccccC---CCCCCCchhhh---HHHHHHHHHHHHHH
Q 004879 391 ------DVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPD-KFFWRG---QFYGEHDDFRR---FSFFSRAALELLLQ 457 (725)
Q Consensus 391 ------~~~i~~~f~g~~~~~rV~~~~v~GI~V~~I~~~~ps-~~F~r~---~~Yg~~dd~~r---~~~FsravlelL~~ 457 (725)
.+.+...+.|+...++||...+.++++|++++..|. .+|.|. ..|+. |+..| +.+|+++++++++.
T Consensus 166 ~~~~G~~~~v~v~l~g~~v~~rvw~~~vg~v~lylLDtd~~~n~~~~R~iT~~LYg~-D~~~Rl~Qe~~Lg~agl~~Lr~ 244 (778)
T cd04299 166 RDADGEPVRVSVELPGRTVYARVWKAQVGRVPLYLLDTDIPENSPDDRGITDRLYGG-DQETRIQQEILLGIGGVRALRA 244 (778)
T ss_pred ecCCCCeEEEEEeeCCCceEEEEEEEEcCCCCEEEecCCccccchhhcccccCCCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 112223345666678999999999999999976542 246665 46874 56677 58999999999988
Q ss_pred cCCCceEEEECCCchhhHHHH----HHHh--hccC---CCCCCcEEEEeeCCcccC--CCChhhhh--------hcCCcc
Q 004879 458 AGKQPDIIHCHDWQTAFVAPL----YWDL--YVPK---GLNSARVCFTCHNFEYQG--TAPAKELA--------SCGLDV 518 (725)
Q Consensus 458 ~~~kPDIIH~Hdw~sa~vapl----~~~~--ya~~---gl~~ipiV~TiHn~~~qg--~~p~~~l~--------~~Gl~~ 518 (725)
.+.+|||||||+||++++++- +... +... ...+..+|||+||..++| .+|.+.+. .+|++.
T Consensus 245 lg~~pdViH~ND~Haal~~lE~~R~ll~~~g~~~~~A~e~vr~~tvFTtHTpvpqG~d~Fp~~l~~~~~~~~~~~lgl~~ 324 (778)
T cd04299 245 LGIKPTVYHMNEGHAAFLGLERIRELMAEGGLSFDEALEAVRASTVFTTHTPVPAGHDRFPPDLVERYFGPYARELGLSR 324 (778)
T ss_pred hCCCCeEEEeCCCcHHHHHHHHHHHHHHHcCCCHHHHHHhhCCeEEEecCCchHHHhhhCCHHHHHHHhhHHHHHcCCCH
Confidence 888999999999999998542 3221 1000 013578999999999999 78876553 357776
Q ss_pred cccCCccccccc-ccccchhhhhhhhhhccEEEEeCHHH---HHHHHhhcc-CCCcccccccCCCcEEEEeCCccCCCCC
Q 004879 519 QQLNRPDRMQDN-SAHDRINPLKGAIVFSNIVTTVSPSY---AQEVRTSEG-GQGLHSTLNFHSKKFVGILNGIDTDAWN 593 (725)
Q Consensus 519 ~~l~~~~~l~d~-~~~~~in~~k~ai~~AD~VitVS~~~---a~ev~~~~~-g~GL~~~l~~~~~Kv~vIpNGID~~~f~ 593 (725)
+.+.... ++.+ ..++.+|+++.|+++|+.|++||+.+ ++++..+.+ +.+ ....++..|.||||...|.
T Consensus 325 ~~~~~lg-~e~~~~~~~~~nM~~laL~~S~~vNgVS~lHg~vsr~mf~~~~~g~p------~~~~~i~~ITNGVh~~~W~ 397 (778)
T cd04299 325 DRFLALG-RENPGDDPEPFNMAVLALRLAQRANGVSRLHGEVSREMFAGLWPGFP------VEEVPIGHVTNGVHVPTWV 397 (778)
T ss_pred HHHhhhc-cccccCccCceeHHHHHHHhcCeeeeecHHHHHHHHHHhhhhhccCC------cccCceeceeCCcchhhhc
Confidence 5543222 1110 01356899999999999999999998 555443211 222 2356799999999999998
Q ss_pred -CCCcchhhhccC------------------ccc---ccchhhhHHHHHHHc-----------CCCC---------CCCC
Q 004879 594 -PATDTFLKVQYN------------------AND---LQGKAENKESIRKHL-----------GLSS---------ADAR 631 (725)
Q Consensus 594 -P~~d~~l~~~ys------------------~~d---~~gK~~~K~aLRk~l-----------GL~~---------~d~~ 631 (725)
|..+..+..... ..| +++|..+|..|.+.. |++. .+++
T Consensus 398 ~P~~~~l~~~~~g~~w~~~~~~~~~~~~~~~i~d~~lw~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~~~~ldpd 477 (778)
T cd04299 398 APEMRELYDRYLGGDWRERPTDPELWEAVDDIPDEELWEVRQQLRRRLIEFVRRRLRRQWLRRGASAEEIGEADDVLDPN 477 (778)
T ss_pred CHHHHHHHHHhcCcchhhccchHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCchhhhhhcCCccCCC
Confidence 887776643321 123 568888998775553 3321 3578
Q ss_pred CCEEEEeecCcCCCCHHHHHHHHHHhhc------CCcEEEEEcCCCccc------cc------H----------------
Q 004879 632 KPLVGCITRLVPQKGVHLIRHAIYRTLE------LGGQFILLGSSPVPH------IQ------V---------------- 677 (725)
Q Consensus 632 ~plV~fVGRL~~qKGvdlLieA~~~L~~------~~iqLVIvG~Gp~~~------le------~---------------- 677 (725)
.++++|++|+..+||.+++++.+.++.+ .++|||++|.+...+ ++ +
T Consensus 478 ~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVvfle~Yd~ 557 (778)
T cd04299 478 VLTIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIVFLEDYDM 557 (778)
T ss_pred ccEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCCCcEEEEcCCCH
Confidence 8899999999999999999999888754 479999999875321 11 1
Q ss_pred ---HHHHHhcCeEEEcCC--cccchHHHHHHc---CCCcccc--------CCCCCceee
Q 004879 678 ---YPILLSSFSFLRKHI--FNICNLYIKLGQ---GGDLTVN--------NNCEPWLHH 720 (725)
Q Consensus 678 ---~~iyAaADIfVlPS~--~EpfGLv~LEAM---g~~~~V~--------~~~~G~l~~ 720 (725)
+.++++||++++||+ +||||++.|-|| |+.+.|. ++.|||...
T Consensus 558 ~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~~g~nGwaig 616 (778)
T cd04299 558 ALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGYDGENGWAIG 616 (778)
T ss_pred HHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCccccccCCCCceEeC
Confidence 189999999999999 999999999998 3334443 477888764
No 12
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.96 E-value=3.5e-28 Score=285.06 Aligned_cols=360 Identities=14% Similarity=0.111 Sum_probs=210.7
Q ss_pred hhhhhhchhhHHHHhhhccCCCCCCCCeEEEEcCcc----CCCC---CCCcHHHHHHHHHHHH--------HHCCC----
Q 004879 307 MECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEM----APVA---KVGGLGDVVAGLGKAL--------QKKGH---- 367 (725)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~MkILhIs~E~----~P~~---kvGGlg~vV~~LaraL--------~~~GH---- 367 (725)
.++-+..|+..|..|++..++. |||++|+.+. .|.. -+||..+||.+|+++| +++||
T Consensus 234 ~~~~~~p~~~~~e~f~~~~p~~----~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~ 309 (784)
T TIGR02470 234 DDLLEAPDPSVLEAFLGRIPMV----FNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITP 309 (784)
T ss_pred HHHHhCCChhHHHHHHhhCCcc----ceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 4566777888888887766553 8999999998 3321 1699999999999985 68999
Q ss_pred eEEEEeeCCCCCcccc-cccccccceeeeeccCCcceeeeeEeeeeCCeeEEEeCCCCCCcccccCCCCCCCchhhh-HH
Q 004879 368 LVEIVLPKYDCMQYDR-IDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRR-FS 445 (725)
Q Consensus 368 eV~VItP~y~~l~~~~-v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r-~~ 445 (725)
+|.|+|...+...... -..+..+ . ..+|+.+..++.. |.....-. -|-...+.+. ..
T Consensus 310 ~V~I~TR~~~~~~~~~~~~~~e~~--------~-----------~~~~~~I~rvp~g-~~~~~~~~-~~i~k~~l~p~l~ 368 (784)
T TIGR02470 310 KILIVTRLIPDAEGTTCNQRLEKV--------Y-----------GTEHAWILRVPFR-TENGIILR-NWISRFEIWPYLE 368 (784)
T ss_pred eEEEEecCCCCccccccccccccc--------c-----------CCCceEEEEecCC-CCcccccc-cccCHHHHHHHHH
Confidence 7779986543211000 0000000 0 1234444444311 10000000 0101112222 22
Q ss_pred HHHHHHHHHHHH-cCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCc
Q 004879 446 FFSRAALELLLQ-AGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRP 524 (725)
Q Consensus 446 ~FsravlelL~~-~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~ 524 (725)
-|+..++..+.. .+.+||+||+|.|.++++|.++.. ..++|.|+|.|.+.-.... ..|..+....
T Consensus 369 ~f~~~~~~~~~~~~~~~pDlIHahy~d~glva~lla~------~lgVP~v~t~HsL~~~K~~------~~g~~~~~~e-- 434 (784)
T TIGR02470 369 TFAEDAEKEILAELQGKPDLIIGNYSDGNLVASLLAR------KLGVTQCTIAHALEKTKYP------DSDIYWQEFE-- 434 (784)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEECCCchHHHHHHHHH------hcCCCEEEECCcchhhccc------ccccccccch--
Confidence 367777765553 356899999999999998644332 2589999999988421111 0111000000
Q ss_pred ccccccccccchhhhhhhhhhccEEEEeCHHHHHHH---Hhhc-----cC-CCccccc---ccCCCcEEEEeCCccCCCC
Q 004879 525 DRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEV---RTSE-----GG-QGLHSTL---NFHSKKFVGILNGIDTDAW 592 (725)
Q Consensus 525 ~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev---~~~~-----~g-~GL~~~l---~~~~~Kv~vIpNGID~~~f 592 (725)
++. .+..++.....++..||.|||+|+...... ...+ +. .||..+. ..+..|+.+||+|+|...|
T Consensus 435 ~~~---~~~~r~~ae~~~~~~AD~IItsT~qEi~~~~~~v~qY~s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF 511 (784)
T TIGR02470 435 DKY---HFSCQFTADLIAMNAADFIITSTYQEIAGTKDSVGQYESHQAFTMPGLYRVVHGIDVFDPKFNIVSPGADESIY 511 (784)
T ss_pred hHH---HhhhhhhHHHHHHhcCCEEEECcHHHhhhhhhhhhhhhhcccccccceeeeecCccCCcCCeEEECCCcChhhc
Confidence 000 011122224577888999999997542211 1101 00 0222221 1245799999999999999
Q ss_pred CCCCcchhh-hccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhh--cCCcEEEEEcC
Q 004879 593 NPATDTFLK-VQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL--ELGGQFILLGS 669 (725)
Q Consensus 593 ~P~~d~~l~-~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~--~~~iqLVIvG~ 669 (725)
.|.++..-. ... ...++...-++...++.+|+.. ++++|+|+++||+.++||++.|++|+.++. ..+++|+|+|+
T Consensus 512 ~P~~~~~~r~~~~-~~~ie~ll~~~~~~~~~~G~l~-d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGG 589 (784)
T TIGR02470 512 FPYSDKEKRLTNL-HPEIEELLFSLEDNDEHYGYLK-DPNKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAG 589 (784)
T ss_pred CCCCchhhhhhhh-hcchhhhccchhhHHHHhCCCC-CCCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeC
Confidence 885431100 000 0000111123456678889742 457899999999999999999999998764 34689999998
Q ss_pred CCcc----------cccH--------------------------HHHHH----hcCeEEEcCCcccchHHHHHHcCCCcc
Q 004879 670 SPVP----------HIQV--------------------------YPILL----SSFSFLRKHIFNICNLYIKLGQGGDLT 709 (725)
Q Consensus 670 Gp~~----------~le~--------------------------~~iyA----aADIfVlPS~~EpfGLv~LEAMg~~~~ 709 (725)
|+.. .+++ ..+|+ ++|+||+||++||||+|++|||+++.|
T Consensus 590 g~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlP 669 (784)
T TIGR02470 590 KLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLP 669 (784)
T ss_pred CcccccccchhHHHHHHHHHHHHHHhCCCCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCC
Confidence 6420 0100 03453 357999999999999999999966555
Q ss_pred c
Q 004879 710 V 710 (725)
Q Consensus 710 V 710 (725)
|
T Consensus 670 V 670 (784)
T TIGR02470 670 T 670 (784)
T ss_pred E
Confidence 4
No 13
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.96 E-value=4e-28 Score=271.02 Aligned_cols=300 Identities=18% Similarity=0.225 Sum_probs=183.6
Q ss_pred CCCcHHHHHHHHHHHHHHCCC--eEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeCCeeEEEeCCCC
Q 004879 347 KVGGLGDVVAGLGKALQKKGH--LVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHH 424 (725)
Q Consensus 347 kvGGlg~vV~~LaraL~~~GH--eV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~GI~V~~I~~~~ 424 (725)
.+||+++++.+|+++|.++|| +|+|+|+.++...... .. .. .+....+|++++.++..
T Consensus 24 ~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~--~~-----------~~------~~~~~~~gv~v~r~~~~- 83 (439)
T TIGR02472 24 DTGGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSP--DY-----------AQ------PIERIAPGARIVRLPFG- 83 (439)
T ss_pred CCCCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCC--cc-----------CC------CeeEeCCCcEEEEecCC-
Confidence 379999999999999999997 9999997754321000 00 00 01223578888877521
Q ss_pred CCcccccCCCCCCCchhhh-HHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCCccc
Q 004879 425 PDKFFWRGQFYGEHDDFRR-FSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQ 503 (725)
Q Consensus 425 ps~~F~r~~~Yg~~dd~~r-~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~q 503 (725)
+ ..|....+... ...|+..+..++++.+.+|||||+|+|.+++++.++ .. ..++|+|+|+|+....
T Consensus 84 ~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~DvIH~h~~~~~~~~~~~-~~-----~~~~p~V~t~H~~~~~ 150 (439)
T TIGR02472 84 P-------RRYLRKELLWPYLDELADNLLQHLRQQGHLPDLIHAHYADAGYVGARL-SR-----LLGVPLIFTGHSLGRE 150 (439)
T ss_pred C-------CCCcChhhhhhhHHHHHHHHHHHHHHcCCCCCEEEEcchhHHHHHHHH-HH-----HhCCCEEEecccccch
Confidence 1 01110011111 234666677777654458999999999887764333 22 2478999999985321
Q ss_pred CCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEE
Q 004879 504 GTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGI 583 (725)
Q Consensus 504 g~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vI 583 (725)
. ...+...|.....+. .+ +....++..++.++..+|.|+++|+....+...... | .++.|+.+|
T Consensus 151 ~---~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~--~------~~~~ki~vI 214 (439)
T TIGR02472 151 K---RRRLLAAGLKPQQIE---KQ--YNISRRIEAEEETLAHASLVITSTHQEIEEQYALYD--S------YQPERMQVI 214 (439)
T ss_pred h---hhhcccCCCChhhhh---hh--cchHHHHHHHHHHHHhCCEEEECCHHHHHHHHHhcc--C------CCccceEEE
Confidence 0 001111111111100 00 001223345677889999999999765444332111 1 246789999
Q ss_pred eCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhh--cCC
Q 004879 584 LNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL--ELG 661 (725)
Q Consensus 584 pNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~--~~~ 661 (725)
|||||++.|.|..... .....+..+ +.++.+ ++.++|+|+||+.++||++.+++|+..+. ...
T Consensus 215 pnGvd~~~f~~~~~~~-----------~~~~~~~~~-~~~~~~---~~~~~i~~vGrl~~~Kg~~~li~A~~~l~~~~~~ 279 (439)
T TIGR02472 215 PPGVDLSRFYPPQSSE-----------ETSEIDNLL-APFLKD---PEKPPILAISRPDRRKNIPSLVEAYGRSPKLQEM 279 (439)
T ss_pred CCCcChhhcCCCCccc-----------cchhHHHHH-Hhhccc---cCCcEEEEEcCCcccCCHHHHHHHHHhChhhhhh
Confidence 9999999998753110 001122223 334444 35689999999999999999999998642 223
Q ss_pred cEEE-EEcCCCccc-cc------------------------------HH---HHHHhc----CeEEEcCCcccchHHHHH
Q 004879 662 GQFI-LLGSSPVPH-IQ------------------------------VY---PILLSS----FSFLRKHIFNICNLYIKL 702 (725)
Q Consensus 662 iqLV-IvG~Gp~~~-le------------------------------~~---~iyAaA----DIfVlPS~~EpfGLv~LE 702 (725)
.+++ ++|+|+... ++ .. .+|++| |+||+||.+|+||++++|
T Consensus 280 ~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lE 359 (439)
T TIGR02472 280 ANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLE 359 (439)
T ss_pred ccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHH
Confidence 4444 578876421 10 01 678877 999999999999999999
Q ss_pred HcCCCccc
Q 004879 703 GQGGDLTV 710 (725)
Q Consensus 703 AMg~~~~V 710 (725)
||+++.||
T Consensus 360 Ama~G~Pv 367 (439)
T TIGR02472 360 AAACGLPI 367 (439)
T ss_pred HHHhCCCE
Confidence 99655553
No 14
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.96 E-value=1.1e-27 Score=261.88 Aligned_cols=298 Identities=17% Similarity=0.197 Sum_probs=193.2
Q ss_pred EEEEcCccCCCC-----CCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEe
Q 004879 335 VIHIAAEMAPVA-----KVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWV 409 (725)
Q Consensus 335 ILhIs~E~~P~~-----kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~ 409 (725)
|++++....|.. ..||+++++.+|+++|.++||+|+|+++........ . .
T Consensus 1 ~~~~~~~~~~~~~~~~~~~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~----~---------------------~ 55 (405)
T TIGR03449 1 VAMISMHTSPLQQPGTGDAGGMNVYILETATELARRGIEVDIFTRATRPSQPP----V---------------------V 55 (405)
T ss_pred CeEEeccCCccccCCCcCCCCceehHHHHHHHHhhCCCEEEEEecccCCCCCC----c---------------------c
Confidence 567777777752 269999999999999999999999999764321100 0 0
Q ss_pred eeeCCeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHH-HHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCC
Q 004879 410 STIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAAL-ELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGL 488 (725)
Q Consensus 410 ~~v~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~Fsravl-elL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl 488 (725)
...+|+.++.+... + +.. .+.......+..|....+ .++++...+|||||+|+|.+++++..+.. .
T Consensus 56 ~~~~~~~v~~~~~~-~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Diih~h~~~~~~~~~~~~~------~ 122 (405)
T TIGR03449 56 EVAPGVRVRNVVAG-P--YEG----LDKEDLPTQLCAFTGGVLRAEARHEPGYYDLIHSHYWLSGQVGWLLRD------R 122 (405)
T ss_pred ccCCCcEEEEecCC-C--ccc----CCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEechHHHHHHHHHHHH------h
Confidence 01356666655321 0 110 000000111122333334 34444346899999999887765433322 2
Q ss_pred CCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCC
Q 004879 489 NSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQG 568 (725)
Q Consensus 489 ~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~G 568 (725)
.++|+|+|+|+..... ...+..... +.. .......+..+..+|.|+++|+...+.+... ++
T Consensus 123 ~~~p~v~t~h~~~~~~---~~~~~~~~~-------~~~------~~~~~~e~~~~~~~d~vi~~s~~~~~~~~~~-~~-- 183 (405)
T TIGR03449 123 WGVPLVHTAHTLAAVK---NAALADGDT-------PEP------EARRIGEQQLVDNADRLIANTDEEARDLVRH-YD-- 183 (405)
T ss_pred cCCCEEEeccchHHHH---HHhccCCCC-------Cch------HHHHHHHHHHHHhcCeEEECCHHHHHHHHHH-cC--
Confidence 4789999999864210 000000000 000 0011123557788999999999888877652 21
Q ss_pred cccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHH
Q 004879 569 LHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVH 648 (725)
Q Consensus 569 L~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvd 648 (725)
....++.+||||+|.+.|.|. .+...++++|+++ +.++|+|+||+.+.||++
T Consensus 184 ------~~~~ki~vi~ngvd~~~~~~~-------------------~~~~~~~~~~~~~---~~~~i~~~G~l~~~K~~~ 235 (405)
T TIGR03449 184 ------ADPDRIDVVAPGADLERFRPG-------------------DRATERARLGLPL---DTKVVAFVGRIQPLKAPD 235 (405)
T ss_pred ------CChhhEEEECCCcCHHHcCCC-------------------cHHHHHHhcCCCC---CCcEEEEecCCCcccCHH
Confidence 245789999999999888763 2334677888863 678999999999999999
Q ss_pred HHHHHHHHhhc--CC--cEEEEEcCCC-----cc-cccH----------------------HHHHHhcCeEEEcCCcccc
Q 004879 649 LIRHAIYRTLE--LG--GQFILLGSSP-----VP-HIQV----------------------YPILLSSFSFLRKHIFNIC 696 (725)
Q Consensus 649 lLieA~~~L~~--~~--iqLVIvG~Gp-----~~-~le~----------------------~~iyAaADIfVlPS~~Epf 696 (725)
.+++|+..+.+ .+ ++|+|+|++. .. .+++ ..+|+.||++++||..|+|
T Consensus 236 ~li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~ 315 (405)
T TIGR03449 236 VLLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVPSYNESF 315 (405)
T ss_pred HHHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHhCCEEEECCCCCCc
Confidence 99999998864 23 8999999632 11 1111 1799999999999999999
Q ss_pred hHHHHHHcCCCcccc-CCCCCc
Q 004879 697 NLYIKLGQGGDLTVN-NNCEPW 717 (725)
Q Consensus 697 GLv~LEAMg~~~~V~-~~~~G~ 717 (725)
|++++|||+++.||+ ++++|.
T Consensus 316 g~~~lEAma~G~Pvi~~~~~~~ 337 (405)
T TIGR03449 316 GLVAMEAQACGTPVVAARVGGL 337 (405)
T ss_pred ChHHHHHHHcCCCEEEecCCCc
Confidence 999999997766643 444443
No 15
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.96 E-value=1e-27 Score=263.41 Aligned_cols=282 Identities=19% Similarity=0.220 Sum_probs=188.8
Q ss_pred eEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeC
Q 004879 334 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 413 (725)
Q Consensus 334 kILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~ 413 (725)
||++++..|.|. .||.+.++..|+++|.++||+|+|+++.++..... .....
T Consensus 1 kI~~v~~~~~p~--~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~--------------------------~~~~~ 52 (398)
T cd03796 1 RICMVSDFFYPN--LGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGI--------------------------RYLTN 52 (398)
T ss_pred CeeEEeeccccc--cccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCc--------------------------ccccC
Confidence 799999999996 79999999999999999999999999875421100 00124
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcE
Q 004879 414 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 493 (725)
Q Consensus 414 GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipi 493 (725)
|++++.++.. .+.+.... .++..+...+...+. ..+|||||+|++...+....++. + ...++|+
T Consensus 53 ~i~v~~~p~~----~~~~~~~~------~~~~~~~~~l~~~~~--~~~~DiIh~~~~~~~~~~~~~~~--~--~~~~~~~ 116 (398)
T cd03796 53 GLKVYYLPFV----VFYNQSTL------PTFFGTFPLLRNILI--RERITIVHGHQAFSALAHEALLH--A--RTMGLKT 116 (398)
T ss_pred ceeEEEecce----eccCCccc------cchhhhHHHHHHHHH--hcCCCEEEECCCCchHHHHHHHH--h--hhcCCcE
Confidence 5666655421 01111111 011111122223333 35899999998765543112111 1 1357999
Q ss_pred EEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCccccc
Q 004879 494 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTL 573 (725)
Q Consensus 494 V~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l 573 (725)
|+|.|+... ...... .....+.+..+..+|.++++|+...+.+.... +
T Consensus 117 v~t~h~~~~--~~~~~~----------------------~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~-~------- 164 (398)
T cd03796 117 VFTDHSLFG--FADASS----------------------IHTNKLLRFSLADVDHVICVSHTSKENTVLRA-S------- 164 (398)
T ss_pred EEEeccccc--ccchhh----------------------HHhhHHHHHhhccCCEEEEecHhHhhHHHHHh-C-------
Confidence 999998531 000000 00011335567789999999998776543211 1
Q ss_pred ccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHH
Q 004879 574 NFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHA 653 (725)
Q Consensus 574 ~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA 653 (725)
.+..++.+||||+|.+.|.|..+. . +++.++++|+||+.++||++.+++|
T Consensus 165 -~~~~k~~vi~ngvd~~~f~~~~~~--------------------------~---~~~~~~i~~~grl~~~Kg~~~li~a 214 (398)
T cd03796 165 -LDPERVSVIPNAVDSSDFTPDPSK--------------------------R---DNDKITIVVISRLVYRKGIDLLVGI 214 (398)
T ss_pred -CChhhEEEEcCccCHHHcCCCccc--------------------------C---CCCceEEEEEeccchhcCHHHHHHH
Confidence 235789999999999888774210 1 1256899999999999999999999
Q ss_pred HHHhhc--CCcEEEEEcCCCccc-ccH----------------------HHHHHhcCeEEEcCCcccchHHHHHHcCCCc
Q 004879 654 IYRTLE--LGGQFILLGSSPVPH-IQV----------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDL 708 (725)
Q Consensus 654 ~~~L~~--~~iqLVIvG~Gp~~~-le~----------------------~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~ 708 (725)
+..+.+ .+++|+++|+|+... +++ ..+|++||++++||.+|+||++++|||+++.
T Consensus 215 ~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~ 294 (398)
T cd03796 215 IPEICKKHPNVRFIIGGDGPKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGL 294 (398)
T ss_pred HHHHHhhCCCEEEEEEeCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCC
Confidence 998764 489999999987432 111 1899999999999999999999999998888
Q ss_pred ccc-CCCCCceeee
Q 004879 709 TVN-NNCEPWLHHI 721 (725)
Q Consensus 709 ~V~-~~~~G~l~~~ 721 (725)
||+ ++++|.-..|
T Consensus 295 PVI~s~~gg~~e~i 308 (398)
T cd03796 295 LVVSTRVGGIPEVL 308 (398)
T ss_pred CEEECCCCCchhhe
Confidence 864 6667765444
No 16
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.96 E-value=2e-27 Score=283.61 Aligned_cols=347 Identities=16% Similarity=0.140 Sum_probs=204.2
Q ss_pred CCCCCCeEEEEcCccCCC---------CCCCcHHHHHHHHHHHHHHCC--CeEEEEeeCCCCCc----cc-ccccccccc
Q 004879 328 SISSGLHVIHIAAEMAPV---------AKVGGLGDVVAGLGKALQKKG--HLVEIVLPKYDCMQ----YD-RIDDLRALD 391 (725)
Q Consensus 328 ~~~~~MkILhIs~E~~P~---------~kvGGlg~vV~~LaraL~~~G--HeV~VItP~y~~l~----~~-~v~~L~~l~ 391 (725)
.+.++|.|++|+.+-.|- .-+||...||.+|+++|+++| |+|.|+|....... +. .++.+...+
T Consensus 165 ~~~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~ 244 (1050)
T TIGR02468 165 QKEKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRS 244 (1050)
T ss_pred cccCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccc
Confidence 356779999999886542 337999999999999999998 89999997643211 00 000010000
Q ss_pred eeeeeccCCcceeeeeEeeeeCCeeEEEeCCCCCCcccccCCCCCCCchhhh-HHHHHHHHHHHHHHc------------
Q 004879 392 VVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRR-FSFFSRAALELLLQA------------ 458 (725)
Q Consensus 392 ~~i~~~f~g~~~~~rV~~~~v~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r-~~~FsravlelL~~~------------ 458 (725)
+ ++.. -..+..+|+.+..++.. | ...|-....++. ..-|...++.++.+.
T Consensus 245 ----~--~~~~----~~~~~~~g~rIvRip~G-P------~~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~ 307 (1050)
T TIGR02468 245 ----S--ENDG----DEMGESSGAYIIRIPFG-P------RDKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGH 307 (1050)
T ss_pred ----c--cccc----ccccCCCCeEEEEeccC-C------CCCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccc
Confidence 0 0000 01123467777766521 1 111211122222 234777777665531
Q ss_pred CCCceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCC-cccccCCcccccccccccchh
Q 004879 459 GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGL-DVQQLNRPDRMQDNSAHDRIN 537 (725)
Q Consensus 459 ~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl-~~~~l~~~~~l~d~~~~~~in 537 (725)
...|||||+|+|.++.++.++.. ..++|+|+|.|.+. ......+..-|. +...+. ..+....++.
T Consensus 308 ~~~pDvIHaHyw~sG~aa~~L~~------~lgVP~V~T~HSLg---r~K~~~ll~~g~~~~~~~~-----~~y~~~~Ri~ 373 (1050)
T TIGR02468 308 PVWPYVIHGHYADAGDSAALLSG------ALNVPMVLTGHSLG---RDKLEQLLKQGRMSKEEIN-----STYKIMRRIE 373 (1050)
T ss_pred CCCCCEEEECcchHHHHHHHHHH------hhCCCEEEECccch---hhhhhhhcccccccccccc-----cccchHHHHH
Confidence 12499999999999998654332 25899999999863 110000001111 100000 0001234566
Q ss_pred hhhhhhhhccEEEEeCHHHHHHHHhhccC--CCcccccc-----------cCCCcEEEEeCCccCCCCCCCCcchhhhcc
Q 004879 538 PLKGAIVFSNIVTTVSPSYAQEVRTSEGG--QGLHSTLN-----------FHSKKFVGILNGIDTDAWNPATDTFLKVQY 604 (725)
Q Consensus 538 ~~k~ai~~AD~VitVS~~~a~ev~~~~~g--~GL~~~l~-----------~~~~Kv~vIpNGID~~~f~P~~d~~l~~~y 604 (725)
.+..++..||.|||+|+..+.++...+.+ .+|...|. ....++.|||||||++.|.|.....-...-
T Consensus 374 ~Ee~~l~~Ad~VIasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~ 453 (1050)
T TIGR02468 374 AEELSLDASEIVITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETE 453 (1050)
T ss_pred HHHHHHHhcCEEEEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhc
Confidence 78889999999999999988876543211 11111111 123489999999999999985311000000
Q ss_pred Cccc--ccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhc----CCcEEEEEcCCCccc----
Q 004879 605 NAND--LQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE----LGGQFILLGSSPVPH---- 674 (725)
Q Consensus 605 s~~d--~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~----~~iqLVIvG~Gp~~~---- 674 (725)
...+ ....+.....+++.+ .. +++|+|+|+||+.++||++.|++|+..+.+ .+++ +|+|+|+...
T Consensus 454 ~~~~~~~~~~~~~~~~l~r~~-~~---pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~-LIiG~gdd~d~l~~ 528 (1050)
T TIGR02468 454 GNEEHPAKPDPPIWSEIMRFF-TN---PRKPMILALARPDPKKNITTLVKAFGECRPLRELANLT-LIMGNRDDIDEMSS 528 (1050)
T ss_pred ccccccccccchhhHHHHhhc-cc---CCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEE-EEEecCchhhhhhc
Confidence 0000 000001112344433 33 478999999999999999999999998863 2444 4668765310
Q ss_pred --------ccH----------------------HHHHHhc----CeEEEcCCcccchHHHHHHcCCCccc
Q 004879 675 --------IQV----------------------YPILLSS----FSFLRKHIFNICNLYIKLGQGGDLTV 710 (725)
Q Consensus 675 --------le~----------------------~~iyAaA----DIfVlPS~~EpfGLv~LEAMg~~~~V 710 (725)
+.. ..+|+.| |+||+||++||||+|++|||+++.||
T Consensus 529 ~~~~~l~~L~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPV 598 (1050)
T TIGR02468 529 GSSSVLTSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPM 598 (1050)
T ss_pred cchHHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCE
Confidence 100 0788877 69999999999999999999666554
No 17
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.96 E-value=2.5e-27 Score=256.27 Aligned_cols=279 Identities=20% Similarity=0.237 Sum_probs=185.8
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeee
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 412 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v 412 (725)
|||++|+..|+|. ..||.+.++.+|+++|.+. |+|+|++...+.. ..
T Consensus 1 mkI~~i~~~~~p~-~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~~-------------------------------~~ 47 (388)
T TIGR02149 1 MKVTVLTREYPPN-VYGGAGVHVEELTRELARL-MDVDVRCFGDQRF-------------------------------DS 47 (388)
T ss_pred CeeEEEecccCcc-ccccHhHHHHHHHHHHHHh-cCeeEEcCCCchh-------------------------------cC
Confidence 8999999998886 4699999999999999987 7888887542210 01
Q ss_pred CCeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCc
Q 004879 413 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSAR 492 (725)
Q Consensus 413 ~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ip 492 (725)
+|++++.+.+. . .+. ..... +..+..... +.....+|||||+|+|.+++++ ..... +.++|
T Consensus 48 ~~~~~~~~~~~--~-~~~-----~~~~~---~~~~~~~~~--~~~~~~~~divh~~~~~~~~~~-~~~~~-----~~~~p 108 (388)
T TIGR02149 48 EGLTVKGYRPW--S-ELK-----EANKA---LGTFSVDLA--MANDPVDADVVHSHTWYTFLAG-HLAKK-----LYDKP 108 (388)
T ss_pred CCeEEEEecCh--h-hcc-----chhhh---hhhhhHHHH--HhhCCCCCCeEeecchhhhhHH-HHHHH-----hcCCC
Confidence 23444333211 0 000 00000 001111111 1112357999999998877653 32221 25899
Q ss_pred EEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccc
Q 004879 493 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHST 572 (725)
Q Consensus 493 iV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~ 572 (725)
+|+|+|+......+...... .+ +.-...+.+.++..+|.|+++|+.+++.+...+.+
T Consensus 109 ~v~~~h~~~~~~~~~~~~~~-~~----------------~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~------ 165 (388)
T TIGR02149 109 LVVTAHSLEPLRPWKEEQLG-GG----------------YKLSSWAEKTAIEAADRVIAVSGGMREDILKYYPD------ 165 (388)
T ss_pred EEEEeecccccccccccccc-cc----------------hhHHHHHHHHHHhhCCEEEEccHHHHHHHHHHcCC------
Confidence 99999987432211100000 00 00011235677889999999999988877653211
Q ss_pred cccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHH
Q 004879 573 LNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRH 652 (725)
Q Consensus 573 l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLie 652 (725)
....++.+||||+|...|.|. .+..+++++|+++ +.++|+|+||+.++||++.+++
T Consensus 166 --~~~~~i~vi~ng~~~~~~~~~-------------------~~~~~~~~~~~~~---~~~~i~~~Grl~~~Kg~~~li~ 221 (388)
T TIGR02149 166 --LDPEKVHVIYNGIDTKEYKPD-------------------DGNVVLDRYGIDR---SRPYILFVGRITRQKGVPHLLD 221 (388)
T ss_pred --CCcceEEEecCCCChhhcCCC-------------------chHHHHHHhCCCC---CceEEEEEcccccccCHHHHHH
Confidence 235689999999999888763 2345778889863 6789999999999999999999
Q ss_pred HHHHhhcCCcEEEEEcCCCccc-----cc---------------------H---HHHHHhcCeEEEcCCcccchHHHHHH
Q 004879 653 AIYRTLELGGQFILLGSSPVPH-----IQ---------------------V---YPILLSSFSFLRKHIFNICNLYIKLG 703 (725)
Q Consensus 653 A~~~L~~~~iqLVIvG~Gp~~~-----le---------------------~---~~iyAaADIfVlPS~~EpfGLv~LEA 703 (725)
|+..+. .+++++++|+|+... ++ . ..+|++||++|+||.+|+||++++||
T Consensus 222 a~~~l~-~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA 300 (388)
T TIGR02149 222 AVHYIP-KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCPSIYEPLGIVNLEA 300 (388)
T ss_pred HHHHHh-hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeCCccCCCChHHHHH
Confidence 999875 478999988765320 10 0 17999999999999999999999999
Q ss_pred cCCCcccc
Q 004879 704 QGGDLTVN 711 (725)
Q Consensus 704 Mg~~~~V~ 711 (725)
|+++.||+
T Consensus 301 ~a~G~PvI 308 (388)
T TIGR02149 301 MACGTPVV 308 (388)
T ss_pred HHcCCCEE
Confidence 97766654
No 18
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.95 E-value=6e-27 Score=263.24 Aligned_cols=286 Identities=15% Similarity=0.213 Sum_probs=183.3
Q ss_pred CCCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeE
Q 004879 329 ISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVW 408 (725)
Q Consensus 329 ~~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~ 408 (725)
.+++|||++++. ..|+...||++.++.+|+++|.++||+|+|+++..+.. . . .
T Consensus 55 ~~~~mrI~~~~~-~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~-~-~---~--------------------- 107 (465)
T PLN02871 55 RSRPRRIALFVE-PSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVP-Q-E---F--------------------- 107 (465)
T ss_pred cCCCceEEEEEC-CcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCC-c-c---c---------------------
Confidence 377899999975 34444689999999999999999999999999764321 0 0 0
Q ss_pred eeeeCCeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCC
Q 004879 409 VSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGL 488 (725)
Q Consensus 409 ~~~v~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl 488 (725)
.|+.++.+.. .+..++.. ..+ .+ .+...+...++ ..+|||||+|++.....+.+++.. .
T Consensus 108 ----~g~~v~~~~~-~~~~~~~~-~~~-------~~-~~~~~l~~~i~--~~kpDiIh~~~~~~~~~~~~~~ak-----~ 166 (465)
T PLN02871 108 ----HGAKVIGSWS-FPCPFYQK-VPL-------SL-ALSPRIISEVA--RFKPDLIHASSPGIMVFGALFYAK-----L 166 (465)
T ss_pred ----cCceeeccCC-cCCccCCC-cee-------ec-cCCHHHHHHHH--hCCCCEEEECCCchhHHHHHHHHH-----H
Confidence 1111111100 00001100 000 00 01112333444 358999999986432222222221 2
Q ss_pred CCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCC
Q 004879 489 NSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQG 568 (725)
Q Consensus 489 ~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~G 568 (725)
.++|+|+|+|+.... ..+. .+.. . + ......+.+..+..+|.|+++|+.+++.+.....
T Consensus 167 ~~ip~V~~~h~~~~~-~~~~-----~~~~--~------~----~~~~~~~~r~~~~~ad~ii~~S~~~~~~l~~~~~--- 225 (465)
T PLN02871 167 LCVPLVMSYHTHVPV-YIPR-----YTFS--W------L----VKPMWDIIRFLHRAADLTLVTSPALGKELEAAGV--- 225 (465)
T ss_pred hCCCEEEEEecCchh-hhhc-----ccch--h------h----HHHHHHHHHHHHhhCCEEEECCHHHHHHHHHcCC---
Confidence 479999999975210 0000 0000 0 0 0001123466678899999999999888765211
Q ss_pred cccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHH
Q 004879 569 LHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVH 648 (725)
Q Consensus 569 L~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvd 648 (725)
....++.+||||||.+.|.|..+ +..++++++.. .++.++|+|+||+.++||++
T Consensus 226 ------~~~~kv~vi~nGvd~~~f~p~~~------------------~~~~~~~~~~~--~~~~~~i~~vGrl~~~K~~~ 279 (465)
T PLN02871 226 ------TAANRIRVWNKGVDSESFHPRFR------------------SEEMRARLSGG--EPEKPLIVYVGRLGAEKNLD 279 (465)
T ss_pred ------CCcCeEEEeCCccCccccCCccc------------------cHHHHHHhcCC--CCCCeEEEEeCCCchhhhHH
Confidence 23568999999999999987421 12344444322 13568999999999999999
Q ss_pred HHHHHHHHhhcCCcEEEEEcCCCccc-ccH------------------HHHHHhcCeEEEcCCcccchHHHHHHcCCCcc
Q 004879 649 LIRHAIYRTLELGGQFILLGSSPVPH-IQV------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLT 709 (725)
Q Consensus 649 lLieA~~~L~~~~iqLVIvG~Gp~~~-le~------------------~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~ 709 (725)
.+++++.++ .+++|+|+|+|+... +++ ..+|++||++|+||.+|+||++++|||+++.|
T Consensus 280 ~li~a~~~~--~~~~l~ivG~G~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G~P 357 (465)
T PLN02871 280 FLKRVMERL--PGARLAFVGDGPYREELEKMFAGTPTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAMASGVP 357 (465)
T ss_pred HHHHHHHhC--CCcEEEEEeCChHHHHHHHHhccCCeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHHHcCCC
Confidence 999999876 379999999998542 211 18999999999999999999999999977766
Q ss_pred cc
Q 004879 710 VN 711 (725)
Q Consensus 710 V~ 711 (725)
|+
T Consensus 358 VI 359 (465)
T PLN02871 358 VV 359 (465)
T ss_pred EE
Confidence 54
No 19
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.95 E-value=1.6e-26 Score=254.44 Aligned_cols=304 Identities=17% Similarity=0.178 Sum_probs=195.6
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeC--CCCCcccccccccccceeeeeccCCcceeeeeEee
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK--YDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVS 410 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~--y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~ 410 (725)
|||++++..|+|. .||++.++.+|+++|.+.||+|+|++|. |+..... .. +.+..+ ...
T Consensus 1 mkIlii~~~~~P~--~~g~~~~~~~l~~~L~~~G~~V~vit~~~~~~~~~~~----~~---------~~~~~~----~~~ 61 (412)
T PRK10307 1 MKILVYGINYAPE--LTGIGKYTGEMAEWLAARGHEVRVITAPPYYPQWRVG----EG---------YSAWRY----RRE 61 (412)
T ss_pred CeEEEEecCCCCC--ccchhhhHHHHHHHHHHCCCeEEEEecCCCCCCCCCC----cc---------cccccc----eee
Confidence 8999999999886 7999999999999999999999999965 3221100 00 000000 011
Q ss_pred eeCCeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHH-HHHHcCCCceEEEECCCch--hhHHHHHHHhhccCC
Q 004879 411 TIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALE-LLLQAGKQPDIIHCHDWQT--AFVAPLYWDLYVPKG 487 (725)
Q Consensus 411 ~v~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~Fsravle-lL~~~~~kPDIIH~Hdw~s--a~vapl~~~~ya~~g 487 (725)
..+|++++.++...+ .. ..+. ........|...+.. +++....+|||||+|.+.. +++ ..+.+.
T Consensus 62 ~~~~i~v~r~~~~~~----~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~p~~~~~~~-~~~~~~----- 128 (412)
T PRK10307 62 SEGGVTVWRCPLYVP----KQ--PSGL-KRLLHLGSFALSSFFPLLAQRRWRPDRVIGVVPTLFCAPG-ARLLAR----- 128 (412)
T ss_pred ecCCeEEEEccccCC----CC--ccHH-HHHHHHHHHHHHHHHHHhhccCCCCCEEEEeCCcHHHHHH-HHHHHH-----
Confidence 246888887652110 00 0000 001111123332222 2222236899999998643 222 222221
Q ss_pred CCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCC
Q 004879 488 LNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQ 567 (725)
Q Consensus 488 l~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~ 567 (725)
..++|+|+++|++... .+...|...... + ..-...+++..+..+|.|+++|+...+.+... +
T Consensus 129 ~~~~~~v~~~~d~~~~------~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~~~--~- 190 (412)
T PRK10307 129 LSGARTWLHIQDYEVD------AAFGLGLLKGGK-----V----ARLATAFERSLLRRFDNVSTISRSMMNKAREK--G- 190 (412)
T ss_pred hhCCCEEEEeccCCHH------HHHHhCCccCcH-----H----HHHHHHHHHHHHhhCCEEEecCHHHHHHHHHc--C-
Confidence 2478999999986321 111111110000 0 00011256778889999999999998877642 1
Q ss_pred CcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCH
Q 004879 568 GLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGV 647 (725)
Q Consensus 568 GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGv 647 (725)
....++.+||||+|.+.|.|..+ ..+..+++.+|+++ +.++++|+||+.+.||+
T Consensus 191 -------~~~~~i~vi~ngvd~~~~~~~~~----------------~~~~~~~~~~~~~~---~~~~i~~~G~l~~~kg~ 244 (412)
T PRK10307 191 -------VAAEKVIFFPNWSEVARFQPVAD----------------ADVDALRAQLGLPD---GKKIVLYSGNIGEKQGL 244 (412)
T ss_pred -------CCcccEEEECCCcCHhhcCCCCc----------------cchHHHHHHcCCCC---CCEEEEEcCccccccCH
Confidence 23568999999999988876421 12345788899873 56899999999999999
Q ss_pred HHHHHHHHHhhc-CCcEEEEEcCCCccc-ccH---------------------HHHHHhcCeEEEcCCcccc----hHHH
Q 004879 648 HLIRHAIYRTLE-LGGQFILLGSSPVPH-IQV---------------------YPILLSSFSFLRKHIFNIC----NLYI 700 (725)
Q Consensus 648 dlLieA~~~L~~-~~iqLVIvG~Gp~~~-le~---------------------~~iyAaADIfVlPS~~Epf----GLv~ 700 (725)
+.|++|+..+.+ .+++|+|+|+|+... +++ ..+|++||++|+||..|++ |...
T Consensus 245 ~~li~a~~~l~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl 324 (412)
T PRK10307 245 ELVIDAARRLRDRPDLIFVICGQGGGKARLEKMAQCRGLPNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKL 324 (412)
T ss_pred HHHHHHHHHhccCCCeEEEEECCChhHHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHH
Confidence 999999988754 369999999998542 211 1799999999999999985 5567
Q ss_pred HHHcCCCccccC
Q 004879 701 KLGQGGDLTVNN 712 (725)
Q Consensus 701 LEAMg~~~~V~~ 712 (725)
+|||+++.||+.
T Consensus 325 ~eama~G~PVi~ 336 (412)
T PRK10307 325 TNMLASGRNVVA 336 (412)
T ss_pred HHHHHcCCCEEE
Confidence 999988777653
No 20
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.95 E-value=4.5e-26 Score=243.97 Aligned_cols=275 Identities=20% Similarity=0.177 Sum_probs=181.7
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeee
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 412 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v 412 (725)
|||++++ +|. .||.+.++.+|+++|.+.||+|+|++...+..... . .
T Consensus 1 mki~~~~---~p~--~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~----~------------------------~ 47 (371)
T cd04962 1 MKIGIVC---YPT--YGGSGVVATELGKALARRGHEVHFITSSRPFRLDE----Y------------------------S 47 (371)
T ss_pred CceeEEE---EeC--CCCccchHHHHHHHHHhcCCceEEEecCCCcchhh----h------------------------c
Confidence 7999997 343 69999999999999999999999998653211000 0 0
Q ss_pred CCeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCc
Q 004879 413 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSAR 492 (725)
Q Consensus 413 ~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ip 492 (725)
.++.++.++.. .+. ....+ . . .....+.+.++++ ..+|||||+|.+.....+..+...+. +..++|
T Consensus 48 ~~~~~~~~~~~----~~~---~~~~~-~-~-~~~~~~~l~~~i~--~~~~divh~~~~~~~~~~~~~~~~~~--~~~~~~ 113 (371)
T cd04962 48 PNIFFHEVEVP----QYP---LFQYP-P-Y-DLALASKIAEVAK--RYKLDLLHVHYAVPHAVAAYLAREIL--GKKDLP 113 (371)
T ss_pred cCeEEEEeccc----ccc---hhhcc-h-h-HHHHHHHHHHHHh--cCCccEEeecccCCccHHHHHHHHhc--CcCCCc
Confidence 11222111110 000 00000 0 0 0112344445554 36899999998655433233222221 113799
Q ss_pred EEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccc
Q 004879 493 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHST 572 (725)
Q Consensus 493 iV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~ 572 (725)
+|+|+|+.++.- .+... ....+.+.++..+|.|+++|+.+++.+... +
T Consensus 114 ~i~~~h~~~~~~---------~~~~~---------------~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-~------- 161 (371)
T cd04962 114 VVTTLHGTDITL---------VGQDP---------------SFQPATRFSIEKSDGVTAVSESLRQETYEL-F------- 161 (371)
T ss_pred EEEEEcCCcccc---------ccccc---------------cchHHHHHHHhhCCEEEEcCHHHHHHHHHh-c-------
Confidence 999999764210 00000 011245667888999999999988777642 2
Q ss_pred cccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHH
Q 004879 573 LNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRH 652 (725)
Q Consensus 573 l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLie 652 (725)
....++.+||||+|...|.|.. +...++++++++ +.++++|+||+.++||++.+++
T Consensus 162 --~~~~~i~vi~n~~~~~~~~~~~-------------------~~~~~~~~~~~~---~~~~il~~g~l~~~K~~~~li~ 217 (371)
T cd04962 162 --DITKEIEVIPNFVDEDRFRPKP-------------------DEALKRRLGAPE---GEKVLIHISNFRPVKRIDDVIR 217 (371)
T ss_pred --CCcCCEEEecCCcCHhhcCCCc-------------------hHHHHHhcCCCC---CCeEEEEecccccccCHHHHHH
Confidence 1346899999999987766531 233556778763 6688999999999999999999
Q ss_pred HHHHhhc-CCcEEEEEcCCCccc-ccH--------------------HHHHHhcCeEEEcCCcccchHHHHHHcCCCccc
Q 004879 653 AIYRTLE-LGGQFILLGSSPVPH-IQV--------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTV 710 (725)
Q Consensus 653 A~~~L~~-~~iqLVIvG~Gp~~~-le~--------------------~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V 710 (725)
|+..+.+ .+++|+++|+|+... +++ ..+|+.||++|+||.+|+||++++|||+++.||
T Consensus 218 a~~~l~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~Pv 297 (371)
T cd04962 218 IFAKVRKEVPARLLLVGDGPERSPAERLARELGLQDDVLFLGKQDHVEELLSIADLFLLPSEKESFGLAALEAMACGVPV 297 (371)
T ss_pred HHHHHHhcCCceEEEEcCCcCHHHHHHHHHHcCCCceEEEecCcccHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCE
Confidence 9998865 378999999987532 110 189999999999999999999999999666554
No 21
>PLN00142 sucrose synthase
Probab=99.94 E-value=2.8e-26 Score=269.25 Aligned_cols=364 Identities=14% Similarity=0.150 Sum_probs=213.6
Q ss_pred hhhhhhchhhHHHHhhhccCCCCCCCCeEEEEcCccC--C-----CCCCCcHHHHHHHHH--------HHHHHCCCeEE-
Q 004879 307 MECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMA--P-----VAKVGGLGDVVAGLG--------KALQKKGHLVE- 370 (725)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~MkILhIs~E~~--P-----~~kvGGlg~vV~~La--------raL~~~GHeV~- 370 (725)
+++-+..|+..|..|++..++- |+|++|+.+.+ | ..-+||.-+||.+++ ++|+++||+|.
T Consensus 258 ~~~~~~p~~~~~e~f~~~~p~~----~~i~~iS~Hg~~~~~~~lG~~DtGGQ~vYVl~~aral~~el~~~l~~~G~~v~~ 333 (815)
T PLN00142 258 LDLLQAPDPSTLEKFLGRIPMV----FNVVIFSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKQQGLDIKP 333 (815)
T ss_pred HHHHhCCChhHHHHHHhhhhHh----HhhheecccccccccccCCCCCCCCceehHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 4566777888888877765543 79999999863 2 124799999997655 67778999774
Q ss_pred ---EEeeCCCCCcccc-cccccccceeeeeccCCcceeeeeEeeeeCCeeEEEeCCCCCCcccccCCCCC----CCchhh
Q 004879 371 ---IVLPKYDCMQYDR-IDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYG----EHDDFR 442 (725)
Q Consensus 371 ---VItP~y~~l~~~~-v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~GI~V~~I~~~~ps~~F~r~~~Yg----~~dd~~ 442 (725)
|+|-.-+...... -..+..+ . ..+|+.+..++ |+...-|- ...+.+
T Consensus 334 ~v~i~TR~i~~~~~~~~~~~~e~v--------~-----------~~~~~~I~rvP-------~g~~~~~l~~~i~ke~l~ 387 (815)
T PLN00142 334 QILIVTRLIPDAKGTTCNQRLEKV--------S-----------GTEHSHILRVP-------FRTEKGILRKWISRFDVW 387 (815)
T ss_pred eeEEEEeccCCccCCcccCcceec--------c-----------CCCceEEEecC-------CCCCccccccccCHHHHH
Confidence 8875432211000 0000000 0 11234443332 11110010 001111
Q ss_pred h-HHHHHHHHHHHHH-HcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccc
Q 004879 443 R-FSFFSRAALELLL-QAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQ 520 (725)
Q Consensus 443 r-~~~FsravlelL~-~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~ 520 (725)
. ..-|+..++..+. ..+.+||+||+|+|.++++|.++... .++|.|+|.|.+.-.... .-|.....
T Consensus 388 p~L~~f~~~~~~~~~~~~~~~PDlIHaHYwdsg~vA~~La~~------lgVP~v~T~HsL~k~K~~------~~~~~~~~ 455 (815)
T PLN00142 388 PYLETFAEDAASEILAELQGKPDLIIGNYSDGNLVASLLAHK------LGVTQCTIAHALEKTKYP------DSDIYWKK 455 (815)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHH------hCCCEEEEcccchhhhcc------ccCCcccc
Confidence 1 1236777776654 34568999999999999986554432 589999999987411110 01111000
Q ss_pred cCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHH---h---hccC---CCcccccc---cCCCcEEEEeCCcc
Q 004879 521 LNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVR---T---SEGG---QGLHSTLN---FHSKKFVGILNGID 588 (725)
Q Consensus 521 l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~---~---~~~g---~GL~~~l~---~~~~Kv~vIpNGID 588 (725)
+. .. +.+..++.....++..||.|||.|+.....+. . ++.+ .||..+++ ....|+.+||+|+|
T Consensus 456 ~e--~~---y~~~~r~~aE~~a~~~Ad~IIasT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD 530 (815)
T PLN00142 456 FD--DK---YHFSCQFTADLIAMNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGAD 530 (815)
T ss_pred cc--hh---hhhhhchHHHHHHHHhhhHHHhCcHHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCC
Confidence 00 00 00112344566788899999999976553221 0 0100 12222211 22558999999999
Q ss_pred CCCCCCCCcch--hhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhc--CCcEE
Q 004879 589 TDAWNPATDTF--LKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQF 664 (725)
Q Consensus 589 ~~~f~P~~d~~--l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~--~~iqL 664 (725)
...|.|..+.. +..-+ +.++.+.-+....++.+|+.. ++++|+|+++||+.++||++.|++|+.++.+ .+++|
T Consensus 531 ~~~F~P~~~~~~rl~~l~--n~I~~~l~~~~~~~e~lg~l~-~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~L 607 (815)
T PLN00142 531 MSIYFPYTEKQKRLTSLH--PSIEELLYSPEQNDEHIGYLK-DRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNL 607 (815)
T ss_pred hhhcCCCChHHhhHHhhc--ccchhhcCChHHHHHHhCCcc-CCCCcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEE
Confidence 99998864211 11000 111122223344566788742 3567899999999999999999999988754 37999
Q ss_pred EEEcCCCcc-------c------ccH-----------------------HHH---HH-hcCeEEEcCCcccchHHHHHHc
Q 004879 665 ILLGSSPVP-------H------IQV-----------------------YPI---LL-SSFSFLRKHIFNICNLYIKLGQ 704 (725)
Q Consensus 665 VIvG~Gp~~-------~------le~-----------------------~~i---yA-aADIfVlPS~~EpfGLv~LEAM 704 (725)
+|+|+|..+ . +.. ..+ ++ ++|+||+||.+||||+|++|||
T Consensus 608 VIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAM 687 (815)
T PLN00142 608 VVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAM 687 (815)
T ss_pred EEEECCccccccccHHHHHHHHHHHHHHHHcCCCCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHH
Confidence 999987210 0 000 023 33 5799999999999999999999
Q ss_pred CCCcc------------ccCCCCCceee
Q 004879 705 GGDLT------------VNNNCEPWLHH 720 (725)
Q Consensus 705 g~~~~------------V~~~~~G~l~~ 720 (725)
+++.| |.+|.+||++.
T Consensus 688 A~GlPVVATdvGG~~EIV~dG~tG~LV~ 715 (815)
T PLN00142 688 TCGLPTFATCQGGPAEIIVDGVSGFHID 715 (815)
T ss_pred HcCCCEEEcCCCCHHHHhcCCCcEEEeC
Confidence 55544 34566666653
No 22
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.94 E-value=9.7e-26 Score=250.25 Aligned_cols=303 Identities=13% Similarity=0.092 Sum_probs=180.7
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeee
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 412 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v 412 (725)
||||+|.... ..||+|.++.+|++.+.++||+|.++.-+........ . .
T Consensus 1 mkil~i~~~l----~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~~---~------------------------~ 49 (405)
T PRK10125 1 MNILQFNVRL----AEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESV---S------------------------H 49 (405)
T ss_pred CeEEEEEeee----cCCchhHHHHHHHHHHHhcCCeEEEEEecCCCccccc---c------------------------c
Confidence 8999998743 5799999999999999999999999986533221100 0 0
Q ss_pred CCee-EEEeCCC-----C-C-CcccccCCCCCCCchhhhHHHHHH-HHHHHHHHcCCCceEEEECCCchhhHHH-HHHHh
Q 004879 413 EGLP-VYFIEPH-----H-P-DKFFWRGQFYGEHDDFRRFSFFSR-AALELLLQAGKQPDIIHCHDWQTAFVAP-LYWDL 482 (725)
Q Consensus 413 ~GI~-V~~I~~~-----~-p-s~~F~r~~~Yg~~dd~~r~~~Fsr-avlelL~~~~~kPDIIH~Hdw~sa~vap-l~~~~ 482 (725)
++++ ++.+.+. | . +.+|++ ..++++ +...++++ ..+|||||+|..+++++.. .+...
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~i~~-~~~pDviHlH~~~~~~~~~~~l~~~ 116 (405)
T PRK10125 50 QNYPQVIKHTPRMTAMANIALFRLFNR------------DLFGNFNELYRTITR-TPGPVVLHFHVLHSYWLNLKSVVRF 116 (405)
T ss_pred CCcceEEEecccHHHHHHHHHHHhcch------------hhcchHHHHHHHHhh-ccCCCEEEEecccCceecHHHHHHH
Confidence 0100 1111100 0 0 001111 112222 22334533 5799999999888754321 11111
Q ss_pred --hccCCCCCCcEEEEeeCCc-ccCCCCh--hh--h-hhcCCcccccCCccccccc---ccccchhhhhhhhhhccEEEE
Q 004879 483 --YVPKGLNSARVCFTCHNFE-YQGTAPA--KE--L-ASCGLDVQQLNRPDRMQDN---SAHDRINPLKGAIVFSNIVTT 551 (725)
Q Consensus 483 --ya~~gl~~ipiV~TiHn~~-~qg~~p~--~~--l-~~~Gl~~~~l~~~~~l~d~---~~~~~in~~k~ai~~AD~Vit 551 (725)
.......++|+|+|+|++. +.|.|.. .. + ..|+-.+..-..|....|. .+..+....+.....++.+++
T Consensus 117 ~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~c~~Cp~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~ 196 (405)
T PRK10125 117 CEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCPTLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQFIS 196 (405)
T ss_pred HhhhhcccCCCCEEEecccccccCCCcCCCcccccccccCCCCCCccCCCCCccchHHHHHHHHHHHHHHHhhcCcEEEE
Confidence 0001125799999999984 6665543 11 1 1233222210011111111 011222223333445688999
Q ss_pred eCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCC
Q 004879 552 VSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADAR 631 (725)
Q Consensus 552 VS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~ 631 (725)
+|...++.+.. .++ ..++.+||||||+..+.+..+. . ..+ .+ ++
T Consensus 197 ~S~~l~~~~~~-~~~----------~~~i~vI~NGid~~~~~~~~~~------~------------~~~----~~---~~ 240 (405)
T PRK10125 197 PSQHVADAFNS-LYG----------PGRCRIINNGIDMATEAILAEL------P------------PVR----ET---QG 240 (405)
T ss_pred cCHHHHHHHHH-HcC----------CCCEEEeCCCcCcccccccccc------c------------ccc----cC---CC
Confidence 99999887653 322 3689999999997544332100 0 000 01 25
Q ss_pred CCEEEEeecC--cCCCCHHHHHHHHHHhhcCCcEEEEEcCCCccc---c-----c--H---HHHHHhcCeEEEcCCcccc
Q 004879 632 KPLVGCITRL--VPQKGVHLIRHAIYRTLELGGQFILLGSSPVPH---I-----Q--V---YPILLSSFSFLRKHIFNIC 696 (725)
Q Consensus 632 ~plV~fVGRL--~~qKGvdlLieA~~~L~~~~iqLVIvG~Gp~~~---l-----e--~---~~iyAaADIfVlPS~~Epf 696 (725)
+++|+++||. .+.||++.+++|+..+. .+++|+|+|.|+... + . . ..+|++||+||+||.+|+|
T Consensus 241 ~~~il~v~~~~~~~~Kg~~~li~A~~~l~-~~~~L~ivG~g~~~~~~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~~Egf 319 (405)
T PRK10125 241 KPKIAVVAHDLRYDGKTDQQLVREMMALG-DKIELHTFGKFSPFTAGNVVNHGFETDKRKLMSALNQMDALVFSSRVDNY 319 (405)
T ss_pred CCEEEEEEeccccCCccHHHHHHHHHhCC-CCeEEEEEcCCCcccccceEEecCcCCHHHHHHHHHhCCEEEECCccccC
Confidence 6789999994 37899999999999874 578999999875321 1 1 1 2799999999999999999
Q ss_pred hHHHHHHcCCCcccc-CCCCC
Q 004879 697 NLYIKLGQGGDLTVN-NNCEP 716 (725)
Q Consensus 697 GLv~LEAMg~~~~V~-~~~~G 716 (725)
|+|++|||+++.||+ .+++|
T Consensus 320 p~vilEAmA~G~PVVat~~gG 340 (405)
T PRK10125 320 PLILCEALSIGVPVIATHSDA 340 (405)
T ss_pred cCHHHHHHHcCCCEEEeCCCC
Confidence 999999997766643 55555
No 23
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.94 E-value=5.7e-25 Score=236.88 Aligned_cols=286 Identities=21% Similarity=0.289 Sum_probs=186.1
Q ss_pred CCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeCCeeEEEeCCCCCCc
Q 004879 348 VGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDK 427 (725)
Q Consensus 348 vGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~GI~V~~I~~~~ps~ 427 (725)
.||++.++.+|+++|+++||+|+|+++........ . .....|+.++.++.. +..
T Consensus 20 ~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~----~---------------------~~~~~~~~~~~~~~~-~~~ 73 (398)
T cd03800 20 TGGQNVYVLELARALARLGHEVDIFTRRIDDALPP----I---------------------VELAPGVRVVRVPAG-PAE 73 (398)
T ss_pred CCceeehHHHHHHHHhccCceEEEEEecCCcccCC----c---------------------cccccceEEEecccc-ccc
Confidence 68999999999999999999999998764321100 0 001245566555421 100
Q ss_pred ccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCC
Q 004879 428 FFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAP 507 (725)
Q Consensus 428 ~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p 507 (725)
+......+ .....|...+..+++....+||+||+|.|.+++++ ..+.. ..++|+|+|.|+........
T Consensus 74 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~-~~~~~-----~~~~~~i~~~h~~~~~~~~~ 141 (398)
T cd03800 74 YLPKEELW------PYLDEFADDLLRFLRREGGRPDLIHAHYWDSGLVA-LLLAR-----RLGIPLVHTFHSLGAVKRRH 141 (398)
T ss_pred CCChhhcc------hhHHHHHHHHHHHHHhcCCCccEEEEecCccchHH-HHHHh-----hcCCceEEEeecccccCCcc
Confidence 11000011 11123555566666643348999999998877753 33322 24799999999874211100
Q ss_pred hhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCc
Q 004879 508 AKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGI 587 (725)
Q Consensus 508 ~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGI 587 (725)
. . ....+ .........+..+..+|.|+++|+.....+...+. ....++.+||||+
T Consensus 142 ---~---~-~~~~~---------~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~---------~~~~~~~vi~ng~ 196 (398)
T cd03800 142 ---L---G-AADTY---------EPARRIEAEERLLRAADRVIASTPQEAEELYSLYG---------AYPRRIRVVPPGV 196 (398)
T ss_pred ---c---c-ccccc---------chhhhhhHHHHHHhhCCEEEEcCHHHHHHHHHHcc---------ccccccEEECCCC
Confidence 0 0 00000 01112334567788999999999988777665221 2345689999999
Q ss_pred cCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhc--CCcEEE
Q 004879 588 DTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFI 665 (725)
Q Consensus 588 D~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~--~~iqLV 665 (725)
|.+.|.|..+. ...++.++.+ ++.++|+|+||+.+.||++.+++|+..+.+ .+++|+
T Consensus 197 ~~~~~~~~~~~------------------~~~~~~~~~~---~~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~ 255 (398)
T cd03800 197 DLERFTPYGRA------------------EARRARLLRD---PDKPRILAVGRLDPRKGIDTLIRAYAELPELRERANLV 255 (398)
T ss_pred Cccceecccch------------------hhHHHhhccC---CCCcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEE
Confidence 99888764211 1114445554 356899999999999999999999999875 379999
Q ss_pred EEcCCCccc---c----c---H-------------------HHHHHhcCeEEEcCCcccchHHHHHHcCCCcccc-CCCC
Q 004879 666 LLGSSPVPH---I----Q---V-------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVN-NNCE 715 (725)
Q Consensus 666 IvG~Gp~~~---l----e---~-------------------~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V~-~~~~ 715 (725)
++|+|+... . + + ..+|+.||++++||.+|+||++++|||+++.||+ ++++
T Consensus 256 i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~ 335 (398)
T cd03800 256 IVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADVFVNPALYEPFGLTALEAMACGLPVVATAVG 335 (398)
T ss_pred EEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCEEEecccccccCcHHHHHHhcCCCEEECCCC
Confidence 999876421 0 0 0 1789999999999999999999999998777754 4444
Q ss_pred Cc
Q 004879 716 PW 717 (725)
Q Consensus 716 G~ 717 (725)
|.
T Consensus 336 ~~ 337 (398)
T cd03800 336 GP 337 (398)
T ss_pred CH
Confidence 43
No 24
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.93 E-value=1.4e-24 Score=230.42 Aligned_cols=281 Identities=17% Similarity=0.197 Sum_probs=185.4
Q ss_pred eEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeC
Q 004879 334 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 413 (725)
Q Consensus 334 kILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~ 413 (725)
||+++++.+ ..||.+.++..++++|.+.||+|+++++........ ... ...
T Consensus 1 kIl~~~~~~----~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~~--~~~-----------------------~~~ 51 (358)
T cd03812 1 KILHIVGTM----NRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYD--DEI-----------------------EKL 51 (358)
T ss_pred CEEEEeCCC----CCccHHHHHHHHHHhcCccceEEEEEEeCCCCcchH--HHH-----------------------HHc
Confidence 689999876 369999999999999999999999999874421100 000 012
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcE
Q 004879 414 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 493 (725)
Q Consensus 414 GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipi 493 (725)
|+.++.+.+. .. ... .+.+....+++ ..+|||||+|......+ +.++... .....+
T Consensus 52 ~~~~~~~~~~----~~----------~~~---~~~~~~~~~~~--~~~~Dvv~~~~~~~~~~-~~~~~~~----~~~~~~ 107 (358)
T cd03812 52 GGKIYYIPAR----KK----------NPL---KYFKKLYKLIK--KNKYDIVHVHGSSASGF-ILLAAKK----AGVKVR 107 (358)
T ss_pred CCeEEEecCC----Cc----------cHH---HHHHHHHHHHh--cCCCCEEEEeCcchhHH-HHHHHhh----CCCCeE
Confidence 4444433211 00 011 12223333444 36899999998765444 2332221 123345
Q ss_pred EEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCccccc
Q 004879 494 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTL 573 (725)
Q Consensus 494 V~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l 573 (725)
+++.|+..+....... . . .. ..+.+.....+|.++++|+..++.+...
T Consensus 108 v~~~~~~~~~~~~~~~----------~------~----~~--~~~~~~~~~~~~~~i~~s~~~~~~~~~~---------- 155 (358)
T cd03812 108 IAHSHNTSDSHDKKKK----------I------L----KY--KVLRKLINRLATDYLACSEEAGKWLFGK---------- 155 (358)
T ss_pred EEEeccccccccccch----------h------h----HH--HHHHHHHHhcCCEEEEcCHHHHHHHHhC----------
Confidence 7888876432111000 0 0 00 1223556778999999999887766531
Q ss_pred ccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHH
Q 004879 574 NFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHA 653 (725)
Q Consensus 574 ~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA 653 (725)
..+.++.+||||+|...|.+... .+.. ++..+.+ .+.+.|+|+||+.++||++.+++|
T Consensus 156 -~~~~~~~vi~ngvd~~~~~~~~~-----------------~~~~-~~~~~~~---~~~~~i~~vGr~~~~Kg~~~li~a 213 (358)
T cd03812 156 -VKNKKFKVIPNGIDLEKFIFNEE-----------------IRKK-RRELGIL---EDKFVIGHVGRFSEQKNHEFLIEI 213 (358)
T ss_pred -CCcccEEEEeccCcHHHcCCCch-----------------hhhH-HHHcCCC---CCCEEEEEEeccccccChHHHHHH
Confidence 13568999999999987766421 1122 4555554 367899999999999999999999
Q ss_pred HHHhhc--CCcEEEEEcCCCccc-ccH--------------------HHHHHhcCeEEEcCCcccchHHHHHHcCCCccc
Q 004879 654 IYRTLE--LGGQFILLGSSPVPH-IQV--------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTV 710 (725)
Q Consensus 654 ~~~L~~--~~iqLVIvG~Gp~~~-le~--------------------~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V 710 (725)
+..+.+ .+++|+|+|+|+... +++ ..+|+.||++|+||.+|+||++++|||+++.||
T Consensus 214 ~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~Pv 293 (358)
T cd03812 214 FAELLKKNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGVRNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPC 293 (358)
T ss_pred HHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCE
Confidence 999875 489999999988532 110 189999999999999999999999999888775
Q ss_pred c-CCCCCceeee
Q 004879 711 N-NNCEPWLHHI 721 (725)
Q Consensus 711 ~-~~~~G~l~~~ 721 (725)
+ ++++|.-..|
T Consensus 294 I~s~~~~~~~~i 305 (358)
T cd03812 294 ILSDTITKEVDL 305 (358)
T ss_pred EEEcCCchhhhh
Confidence 4 5666654433
No 25
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.93 E-value=1.4e-24 Score=245.95 Aligned_cols=290 Identities=18% Similarity=0.182 Sum_probs=166.5
Q ss_pred EEEcCccCCCCCCCcHHHHHHHHHHHHHH-CCCeEEEEeeCCCCCcccccccccccceeeee-----ccCCcceeeeeEe
Q 004879 336 IHIAAEMAPVAKVGGLGDVVAGLGKALQK-KGHLVEIVLPKYDCMQYDRIDDLRALDVVVES-----YFDGRLFKNKVWV 409 (725)
Q Consensus 336 LhIs~E~~P~~kvGGlg~vV~~LaraL~~-~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~-----~f~g~~~~~rV~~ 409 (725)
.-+++|.+- |+||+-+|+..=++.+.+ .|-++.+|.|........+++.+.+-+..+.. .-.| +++++-+
T Consensus 5 fE~swEV~N--KVGGIyTVi~tka~~~~~~~~d~y~~iGP~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~g--~~v~~Gr 80 (590)
T cd03793 5 FEVAWEVAN--KVGGIYTVIKSKAPVTVEEWGDRYCLIGPYNEAKARTEVEILEPPNPALRQALDRMRSRG--IKVHFGR 80 (590)
T ss_pred EEEeehhhc--cCCCeeeeeecCcHHHHHHhCCeEEEECCCCccccCCccccCCCCchHHHHHHHHHHhCC--CeEEEeE
Confidence 346777765 799999999998888875 68999999998652211122111111000000 0011 2344444
Q ss_pred eeeCCee-EEEeCCCCCCccccc--------------CCCCCCCchhhhHHHHHHHHHHHHHH-----cCCCceEEEECC
Q 004879 410 STIEGLP-VYFIEPHHPDKFFWR--------------GQFYGEHDDFRRFSFFSRAALELLLQ-----AGKQPDIIHCHD 469 (725)
Q Consensus 410 ~~v~GI~-V~~I~~~~ps~~F~r--------------~~~Yg~~dd~~r~~~FsravlelL~~-----~~~kPDIIH~Hd 469 (725)
..++|-| |.+++.. + +++. +.+.++. +..-..+|+-++..++.. ...++||+|+|+
T Consensus 81 W~i~G~P~viL~D~~-~--~~~~~~~~~~~lW~~~~i~s~~~~~-d~nea~~fgy~~~~~i~~~~~~~~~~~~dViH~He 156 (590)
T cd03793 81 WLIEGYPKVVLFDIG-S--AAWKLDEWKGELWELCGIGSPEGDR-ETNDAIIFGFLVAWFLGEFAEQFDDEPAVVAHFHE 156 (590)
T ss_pred EEcCCCCeEEEEeCc-h--hhhhHHHHHHHHHHHcCCCCCCCCC-cchHHHHHHHHHHHHHHHHHhhccCCCCeEEEEcc
Confidence 4577776 4555531 1 2211 1111111 122234566555544432 135799999999
Q ss_pred CchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCC-CChh-hhhhcCCcccccCCccc-ccccccccchhhhhhhhhhc
Q 004879 470 WQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGT-APAK-ELASCGLDVQQLNRPDR-MQDNSAHDRINPLKGAIVFS 546 (725)
Q Consensus 470 w~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~-~p~~-~l~~~Gl~~~~l~~~~~-l~d~~~~~~in~~k~ai~~A 546 (725)
|+++.+ .++++.. ..++|+|+|+|...+... +... .+. -.+ ..++ ++. ..+.....+..+++.+...|
T Consensus 157 Wm~g~a-~~~lK~~----~~~VptVfTtHAT~~GR~l~~g~~~~y-~~l--~~~~-~d~eA~~~~I~~r~~iE~~aa~~A 227 (590)
T cd03793 157 WQAGVG-LPLLRKR----KVDVSTIFTTHATLLGRYLCAGNVDFY-NNL--DYFD-VDKEAGKRGIYHRYCIERAAAHCA 227 (590)
T ss_pred hhHhHH-HHHHHHh----CCCCCEEEEecccccccccccCCcccc-hhh--hhcc-hhhhhhcccchHHHHHHHHHHhhC
Confidence 999986 4555532 257999999998753221 1110 000 000 0000 000 00111345566788999999
Q ss_pred cEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcc-hhhhccCcccccchhhhHHHHHHHcCC
Q 004879 547 NIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDT-FLKVQYNANDLQGKAENKESIRKHLGL 625 (725)
Q Consensus 547 D~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~-~l~~~ys~~d~~gK~~~K~aLRk~lGL 625 (725)
|.+||||+.++.++.. .+ ..++++ |||||+|...|.+..+. .+.... ...+ -...+..++.++++
T Consensus 228 d~fttVS~it~~E~~~-Ll--------~~~pd~--ViPNGid~~~f~~~~e~~~~~~~~-k~ki--~~f~~~~~~~~~~~ 293 (590)
T cd03793 228 HVFTTVSEITAYEAEH-LL--------KRKPDV--VLPNGLNVKKFSALHEFQNLHAQS-KEKI--NEFVRGHFYGHYDF 293 (590)
T ss_pred CEEEECChHHHHHHHH-Hh--------CCCCCE--EeCCCcchhhcccchhhhhhhHHh-hhhh--hHHHHHHHhhhcCC
Confidence 9999999999999875 23 244555 99999999998764321 000000 0000 00112335777887
Q ss_pred CCCCCCCCEEEE-eecCcC-CCCHHHHHHHHHHhhc
Q 004879 626 SSADARKPLVGC-ITRLVP-QKGVHLIRHAIYRTLE 659 (725)
Q Consensus 626 ~~~d~~~plV~f-VGRL~~-qKGvdlLieA~~~L~~ 659 (725)
+ +++++++| +||+.. +||++.+++|++++..
T Consensus 294 ~---~d~tli~f~~GR~e~~nKGiDvlIeAl~rLn~ 326 (590)
T cd03793 294 D---LDKTLYFFTAGRYEFSNKGADMFLEALARLNY 326 (590)
T ss_pred C---CCCeEEEEEeeccccccCCHHHHHHHHHHHHH
Confidence 6 36688877 799998 9999999999999864
No 26
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.93 E-value=1.1e-24 Score=236.08 Aligned_cols=294 Identities=17% Similarity=0.126 Sum_probs=178.2
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeee
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 412 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v 412 (725)
|||+++.+.+ ..||.++++.+|+++|.++||+|+|+++.++..... ... ..
T Consensus 1 mkIl~~~~~~----~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~--~~~-----------------------~~ 51 (392)
T cd03805 1 LRVAFIHPDL----GIGGAERLVVDAALALQSRGHEVTIYTSHHDPSHCF--EET-----------------------KD 51 (392)
T ss_pred CeEEEECCCC----CCchHHHHHHHHHHHHHhCCCeEEEEcCCCCchhcc--hhc-----------------------cC
Confidence 8999998765 469999999999999999999999999764421100 000 00
Q ss_pred CCeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHH--HHcCCCceEEEECCCchhhHHHHHHHhhccCCCCC
Q 004879 413 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELL--LQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNS 490 (725)
Q Consensus 413 ~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL--~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ 490 (725)
.++.++.+....|..+|.+.. .+. .++......+. .....+|||||+|++..+. ++. .. ..+
T Consensus 52 ~~~~i~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~--~~~-~~-----~~~ 115 (392)
T cd03805 52 GTLPVRVRGDWLPRSIFGRFH------ILC--AYLRMLYLALYLLLLPDEKYDVFIVDQVSACV--PLL-KL-----FSP 115 (392)
T ss_pred CeeEEEEEeEEEcchhhHhHH------HHH--HHHHHHHHHHHHHhcccCCCCEEEEcCcchHH--HHH-HH-----hcC
Confidence 113333222101111111100 000 11111111111 1124689999999866443 222 21 124
Q ss_pred CcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcc
Q 004879 491 ARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLH 570 (725)
Q Consensus 491 ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~ 570 (725)
.|+|+++|..+........... ..+ ......+.+.++..+|.|+++|+..++.+......
T Consensus 116 ~~~i~~~h~~~~~~~~~~~~~~------~~~----------~~~~~~~e~~~~~~ad~ii~~s~~~~~~~~~~~~~---- 175 (392)
T cd03805 116 SKILFYCHFPDQLLAQRGSLLK------RLY----------RKPFDWLEEFTTGMADKIVVNSNFTASVFKKTFPS---- 175 (392)
T ss_pred CcEEEEEecChHHhcCCCcHHH------HHH----------HHHHHHHHHHHhhCceEEEEcChhHHHHHHHHhcc----
Confidence 8999999954311000000000 000 00011245677889999999999888776542211
Q ss_pred cccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHH
Q 004879 571 STLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 650 (725)
Q Consensus 571 ~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlL 650 (725)
....++.+||||+|.+.|.|.... . .++..+.+ ++.++|+++||+.+.||++.+
T Consensus 176 ----~~~~~~~vi~n~vd~~~~~~~~~~------------------~-~~~~~~~~---~~~~~i~~~grl~~~Kg~~~l 229 (392)
T cd03805 176 ----LAKNPREVVYPCVDTDSFESTSED------------------P-DPGLLIPK---SGKKTFLSINRFERKKNIALA 229 (392)
T ss_pred ----cccCCcceeCCCcCHHHcCccccc------------------c-cccccccC---CCceEEEEEeeecccCChHHH
Confidence 122344699999999888764210 0 11222232 356899999999999999999
Q ss_pred HHHHHHhhc-----CCcEEEEEcCCCcc---------cc----cH-------------------HHHHHhcCeEEEcCCc
Q 004879 651 RHAIYRTLE-----LGGQFILLGSSPVP---------HI----QV-------------------YPILLSSFSFLRKHIF 693 (725)
Q Consensus 651 ieA~~~L~~-----~~iqLVIvG~Gp~~---------~l----e~-------------------~~iyAaADIfVlPS~~ 693 (725)
++|+.++.+ .+++|+++|+|+.+ .+ ++ ..+|++||++++||..
T Consensus 230 l~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~ad~~l~~s~~ 309 (392)
T cd03805 230 IEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSSARALLYTPSN 309 (392)
T ss_pred HHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhhCeEEEECCCc
Confidence 999999864 37899999988642 11 11 1789999999999999
Q ss_pred ccchHHHHHHcCCCcccc-CCCCCc
Q 004879 694 NICNLYIKLGQGGDLTVN-NNCEPW 717 (725)
Q Consensus 694 EpfGLv~LEAMg~~~~V~-~~~~G~ 717 (725)
|+||++++|||+++.||+ .+++|.
T Consensus 310 E~~g~~~lEAma~G~PvI~s~~~~~ 334 (392)
T cd03805 310 EHFGIVPLEAMYAGKPVIACNSGGP 334 (392)
T ss_pred CCCCchHHHHHHcCCCEEEECCCCc
Confidence 999999999997777754 455554
No 27
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.93 E-value=4e-24 Score=231.20 Aligned_cols=277 Identities=15% Similarity=0.130 Sum_probs=175.6
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeee
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 412 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v 412 (725)
.+|+||.+.+ ..||++.++..|+++|.+.||++.|++..... ... ..+ ..
T Consensus 2 ~~il~ii~~~----~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~-~~~--~~~-----------------------~~ 51 (374)
T TIGR03088 2 PLIVHVVYRF----DVGGLENGLVNLINHLPADRYRHAVVALTEVS-AFR--KRI-----------------------QR 51 (374)
T ss_pred ceEEEEeCCC----CCCcHHHHHHHHHhhccccccceEEEEcCCCC-hhH--HHH-----------------------Hh
Confidence 4899998865 46999999999999999999999888732211 100 000 12
Q ss_pred CCeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCc
Q 004879 413 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSAR 492 (725)
Q Consensus 413 ~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ip 492 (725)
.|+.++.+... + . . ++ .+.+.+..++++ .+|||||+|+..+.. ..+.... .++|
T Consensus 52 ~~i~~~~~~~~-~--------~-~---~~----~~~~~l~~~l~~--~~~Divh~~~~~~~~--~~~~~~~-----~~~~ 105 (374)
T TIGR03088 52 PDVAFYALHKQ-P--------G-K---DV----AVYPQLYRLLRQ--LRPDIVHTRNLAALE--AQLPAAL-----AGVP 105 (374)
T ss_pred cCceEEEeCCC-C--------C-C---Ch----HHHHHHHHHHHH--hCCCEEEEcchhHHH--HHHHHHh-----cCCC
Confidence 35555544310 0 0 0 11 112334445553 589999999764332 1222211 2445
Q ss_pred -EEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhh-hhhhhhhccEEEEeCHHHHHHHHhhccCCCcc
Q 004879 493 -VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINP-LKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLH 570 (725)
Q Consensus 493 -iV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~-~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~ 570 (725)
+++|.|+.++... .... + ...+ .+.....+|.++++|+..++.+... ++
T Consensus 106 ~~i~~~h~~~~~~~-~~~~---------------------~--~~~~~~~~~~~~~~~~i~vs~~~~~~~~~~-~~---- 156 (374)
T TIGR03088 106 ARIHGEHGRDVFDL-DGSN---------------------W--KYRWLRRLYRPLIHHYVAVSRDLEDWLRGP-VK---- 156 (374)
T ss_pred eEEEeecCcccccc-hhhH---------------------H--HHHHHHHHHHhcCCeEEEeCHHHHHHHHHh-cC----
Confidence 3566665431100 0000 0 0111 2333446899999999888777652 21
Q ss_pred cccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHH
Q 004879 571 STLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 650 (725)
Q Consensus 571 ~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlL 650 (725)
.+..++.+||||||.+.|.|... .+...++....+ .+.++++++||+.++||++.+
T Consensus 157 ----~~~~~~~vi~ngvd~~~~~~~~~-----------------~~~~~~~~~~~~---~~~~~i~~vGrl~~~Kg~~~l 212 (374)
T TIGR03088 157 ----VPPAKIHQIYNGVDTERFHPSRG-----------------DRSPILPPDFFA---DESVVVGTVGRLQAVKDQPTL 212 (374)
T ss_pred ----CChhhEEEeccCccccccCCCcc-----------------chhhhhHhhcCC---CCCeEEEEEecCCcccCHHHH
Confidence 24578999999999988876421 111222222222 256899999999999999999
Q ss_pred HHHHHHhhcC------CcEEEEEcCCCccc-ccH--------------------HHHHHhcCeEEEcCCcccchHHHHHH
Q 004879 651 RHAIYRTLEL------GGQFILLGSSPVPH-IQV--------------------YPILLSSFSFLRKHIFNICNLYIKLG 703 (725)
Q Consensus 651 ieA~~~L~~~------~iqLVIvG~Gp~~~-le~--------------------~~iyAaADIfVlPS~~EpfGLv~LEA 703 (725)
++|+..+.+. +++|+++|+|+... +++ ..+|++||++|+||.+|+||++++||
T Consensus 213 i~a~~~l~~~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~pS~~Eg~~~~~lEA 292 (374)
T TIGR03088 213 VRAFALLVRQLPEGAERLRLVIVGDGPARGACEQMVRAAGLAHLVWLPGERDDVPALMQALDLFVLPSLAEGISNTILEA 292 (374)
T ss_pred HHHHHHHHHhCcccccceEEEEecCCchHHHHHHHHHHcCCcceEEEcCCcCCHHHHHHhcCEEEeccccccCchHHHHH
Confidence 9999988642 68999999997532 211 18999999999999999999999999
Q ss_pred cCCCcccc-CCCCCce
Q 004879 704 QGGDLTVN-NNCEPWL 718 (725)
Q Consensus 704 Mg~~~~V~-~~~~G~l 718 (725)
|+++.||+ ++++|.-
T Consensus 293 ma~G~Pvv~s~~~g~~ 308 (374)
T TIGR03088 293 MASGLPVIATAVGGNP 308 (374)
T ss_pred HHcCCCEEEcCCCCcH
Confidence 97776643 4455443
No 28
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.93 E-value=7.5e-24 Score=224.29 Aligned_cols=277 Identities=19% Similarity=0.234 Sum_probs=186.0
Q ss_pred eEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeC
Q 004879 334 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 413 (725)
Q Consensus 334 kILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~ 413 (725)
||+++++.+ +.||.+.++..|+++|.+.||+|+|+++........ . . .
T Consensus 1 ~il~~~~~~----~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~----~-----------~-------------~ 48 (360)
T cd04951 1 KILYVITGL----GLGGAEKQVVDLADQFVAKGHQVAIISLTGESEVKP----P-----------I-------------D 48 (360)
T ss_pred CeEEEecCC----CCCCHHHHHHHHHHhcccCCceEEEEEEeCCCCccc----h-----------h-------------h
Confidence 588888764 479999999999999999999999998653321100 0 0 0
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcE
Q 004879 414 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 493 (725)
Q Consensus 414 GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipi 493 (725)
+..+..+.. ... . ..+......+.++++ ..+|||||+|.+++..++.+.... ..++|+
T Consensus 49 ~~~~~~~~~-------~~~-~-------~~~~~~~~~~~~~~~--~~~pdiv~~~~~~~~~~~~l~~~~-----~~~~~~ 106 (360)
T cd04951 49 ATIILNLNM-------SKN-P-------LSFLLALWKLRKILR--QFKPDVVHAHMFHANIFARLLRLF-----LPSPPL 106 (360)
T ss_pred ccceEEecc-------ccc-c-------hhhHHHHHHHHHHHH--hcCCCEEEEcccchHHHHHHHHhh-----CCCCcE
Confidence 000001110 000 0 001111122334444 368999999998776654333222 247899
Q ss_pred EEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCccccc
Q 004879 494 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTL 573 (725)
Q Consensus 494 V~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l 573 (725)
|+|.|+....+... ....+.....++.++++|+...+.+.... +
T Consensus 107 v~~~h~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-~------- 150 (360)
T cd04951 107 ICTAHSKNEGGRLR----------------------------MLAYRLTDFLSDLTTNVSKEALDYFIASK-A------- 150 (360)
T ss_pred EEEeeccCchhHHH----------------------------HHHHHHHhhccCceEEEcHHHHHHHHhcc-C-------
Confidence 99999874221100 01112333457888999988877776521 1
Q ss_pred ccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHH
Q 004879 574 NFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHA 653 (725)
Q Consensus 574 ~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA 653 (725)
.+..++.+||||+|...|.+.. ..+..+++.+++++ +.++++|+||+.+.||++.+++|
T Consensus 151 -~~~~~~~~i~ng~~~~~~~~~~-----------------~~~~~~~~~~~~~~---~~~~~l~~g~~~~~kg~~~li~a 209 (360)
T cd04951 151 -FNANKSFVVYNGIDTDRFRKDP-----------------ARRLKIRNALGVKN---DTFVILAVGRLVEAKDYPNLLKA 209 (360)
T ss_pred -CCcccEEEEccccchhhcCcch-----------------HHHHHHHHHcCcCC---CCEEEEEEeeCchhcCcHHHHHH
Confidence 2356899999999988776531 13445778888863 67899999999999999999999
Q ss_pred HHHhhc--CCcEEEEEcCCCccc-ccH--------------------HHHHHhcCeEEEcCCcccchHHHHHHcCCCccc
Q 004879 654 IYRTLE--LGGQFILLGSSPVPH-IQV--------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTV 710 (725)
Q Consensus 654 ~~~L~~--~~iqLVIvG~Gp~~~-le~--------------------~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V 710 (725)
+..+.+ .+++|+|+|+|+... +++ ..+|+.||++++||.+|+||++++|||+++.||
T Consensus 210 ~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~Pv 289 (360)
T cd04951 210 FAKLLSDYLDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLRDDIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPV 289 (360)
T ss_pred HHHHHhhCCCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEecccccHHHHHHhhceEEecccccCCChHHHHHHHcCCCE
Confidence 998875 379999999998542 111 189999999999999999999999999877775
Q ss_pred c-CCCCCceeee
Q 004879 711 N-NNCEPWLHHI 721 (725)
Q Consensus 711 ~-~~~~G~l~~~ 721 (725)
+ ++.+|.-..+
T Consensus 290 I~~~~~~~~e~i 301 (360)
T cd04951 290 VATDAGGVREVV 301 (360)
T ss_pred EEecCCChhhEe
Confidence 4 5555554444
No 29
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.93 E-value=2.3e-24 Score=241.92 Aligned_cols=301 Identities=13% Similarity=0.102 Sum_probs=174.5
Q ss_pred CCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCC-CeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEe
Q 004879 331 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKG-HLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWV 409 (725)
Q Consensus 331 ~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~G-HeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~ 409 (725)
..|||+++|..|.|. ++|+.+.+..++..|+++| |+|+||.|+|+..+... ..+-++.+.+. ..+....+-|.
T Consensus 3 ~~mrIaivTdt~lP~--vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~---~~~~~~~f~~~-~~~e~~~~~~~ 76 (462)
T PLN02846 3 KKQHIAIFTTASLPW--MTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKL---VYPNKITFSSP-SEQEAYVRQWL 76 (462)
T ss_pred CCCEEEEEEcCCCCC--CCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccc---cccccccccCc-hhhhhhhhhhc
Confidence 459999999999998 8999999999999999999 89999999986432100 00000000000 00000011111
Q ss_pred eeeCCeeEEEeCCCCCCcccccCCCCCCC-chhhhHHHHHHHHHHHHHHcCCCceEEEECCCchh-hH-HHHHHHhhccC
Q 004879 410 STIEGLPVYFIEPHHPDKFFWRGQFYGEH-DDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTA-FV-APLYWDLYVPK 486 (725)
Q Consensus 410 ~~v~GI~V~~I~~~~ps~~F~r~~~Yg~~-dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa-~v-apl~~~~ya~~ 486 (725)
+-.++++... | + .+|+.. ....+..+....+.+.+. ..+|||||+|++... .+ ....+. .
T Consensus 77 ----~~~v~r~~s~-~--~----p~yp~r~~~~~r~~~~~~~i~~~l~--~~~pDVIHv~tP~~LG~~~~g~~~~---~- 139 (462)
T PLN02846 77 ----EERISFLPKF-S--I----KFYPGKFSTDKRSILPVGDISETIP--DEEADIAVLEEPEHLTWYHHGKRWK---T- 139 (462)
T ss_pred ----cCeEEEeccc-c--c----ccCcccccccccccCChHHHHHHHH--hcCCCEEEEcCchhhhhHHHHHHHH---h-
Confidence 1122222210 0 0 012110 000122223344555555 368999999986542 21 011111 1
Q ss_pred CCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccC
Q 004879 487 GLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGG 566 (725)
Q Consensus 487 gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g 566 (725)
.. .++|.|+|+- |..+.+... .|.....+ ......+++. .+||.|+++|....+ +..
T Consensus 140 -k~-~~vV~tyHT~-y~~Y~~~~~---~g~~~~~l----------~~~~~~~~~r--~~~d~vi~pS~~~~~-l~~---- 196 (462)
T PLN02846 140 -KF-RLVIGIVHTN-YLEYVKREK---NGRVKAFL----------LKYINSWVVD--IYCHKVIRLSAATQD-YPR---- 196 (462)
T ss_pred -cC-CcEEEEECCC-hHHHHHHhc---cchHHHHH----------HHHHHHHHHH--HhcCEEEccCHHHHH-Hhh----
Confidence 12 3488899973 211111000 00000000 0000112222 248999999975433 332
Q ss_pred CCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCC
Q 004879 567 QGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKG 646 (725)
Q Consensus 567 ~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKG 646 (725)
.....+||||...|.|... ..++.++ +. +.-.++++|+||+.++||
T Consensus 197 ------------~~i~~v~GVd~~~f~~~~~--------------------~~~~~~~-~~-~~~~~~~l~vGRL~~eK~ 242 (462)
T PLN02846 197 ------------SIICNVHGVNPKFLEIGKL--------------------KLEQQKN-GE-QAFTKGAYYIGKMVWSKG 242 (462)
T ss_pred ------------CEEecCceechhhcCCCcc--------------------cHhhhcC-CC-CCcceEEEEEecCcccCC
Confidence 2334468999998887521 1222222 21 112457999999999999
Q ss_pred HHHHHHHHHHhhc--CCcEEEEEcCCCccc-ccH------------------HHHHHhcCeEEEcCCcccchHHHHHHcC
Q 004879 647 VHLIRHAIYRTLE--LGGQFILLGSSPVPH-IQV------------------YPILLSSFSFLRKHIFNICNLYIKLGQG 705 (725)
Q Consensus 647 vdlLieA~~~L~~--~~iqLVIvG~Gp~~~-le~------------------~~iyAaADIfVlPS~~EpfGLv~LEAMg 705 (725)
++.+++|+..+.+ .+++|+|+|+||.+. +++ +.+|+.+|+||+||.+|+||+|.+|||+
T Consensus 243 ~~~Li~a~~~l~~~~~~~~l~ivGdGp~~~~L~~~a~~l~l~~~vf~G~~~~~~~~~~~DvFv~pS~~Et~g~v~lEAmA 322 (462)
T PLN02846 243 YKELLKLLHKHQKELSGLEVDLYGSGEDSDEVKAAAEKLELDVRVYPGRDHADPLFHDYKVFLNPSTTDVVCTTTAEALA 322 (462)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEECCCccHHHHHHHHHhcCCcEEEECCCCCHHHHHHhCCEEEECCCcccchHHHHHHHH
Confidence 9999999998764 478999999999763 221 1699999999999999999999999998
Q ss_pred CCcccc
Q 004879 706 GDLTVN 711 (725)
Q Consensus 706 ~~~~V~ 711 (725)
++.||+
T Consensus 323 ~G~PVV 328 (462)
T PLN02846 323 MGKIVV 328 (462)
T ss_pred cCCcEE
Confidence 877754
No 30
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.93 E-value=7.6e-24 Score=222.86 Aligned_cols=253 Identities=19% Similarity=0.118 Sum_probs=168.7
Q ss_pred CeEEEEcCccCC--CCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEee
Q 004879 333 LHVIHIAAEMAP--VAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVS 410 (725)
Q Consensus 333 MkILhIs~E~~P--~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~ 410 (725)
|||++|++.+.| ....||.++++.+|+++|.+.||+|+|+++..+..... ...
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~----~~~--------------------- 55 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAAP----LVP--------------------- 55 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccc----eee---------------------
Confidence 899999998754 23489999999999999999999999999875432110 000
Q ss_pred eeCCeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCC
Q 004879 411 TIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNS 490 (725)
Q Consensus 411 ~v~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ 490 (725)
... ..+... . .. .......+.+.+.++++ ..+|||||+|.+..... . . ...+
T Consensus 56 -~~~-~~~~~~------~------~~---~~~~~~~~~~~~~~~~~--~~~~Divh~~~~~~~~~---~-~-----~~~~ 107 (335)
T cd03802 56 -VVP-EPLRLD------A------PG---RDRAEAEALALAERALA--AGDFDIVHNHSLHLPLP---F-A-----RPLP 107 (335)
T ss_pred -ccC-CCcccc------c------ch---hhHhhHHHHHHHHHHHh--cCCCCEEEecCcccchh---h-h-----cccC
Confidence 000 000000 0 00 00011112233334444 36899999998875542 1 1 1357
Q ss_pred CcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcc
Q 004879 491 ARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLH 570 (725)
Q Consensus 491 ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~ 570 (725)
+|+|+|+|+....... . ........+.++++|+........
T Consensus 108 ~~~v~~~h~~~~~~~~-------------------------~------~~~~~~~~~~~~~~s~~~~~~~~~-------- 148 (335)
T cd03802 108 VPVVTTLHGPPDPELL-------------------------K------LYYAARPDVPFVSISDAQRRPWPP-------- 148 (335)
T ss_pred CCEEEEecCCCCcccc-------------------------h------HHHhhCcCCeEEEecHHHHhhccc--------
Confidence 9999999987421100 0 112344567899999877654321
Q ss_pred cccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHH
Q 004879 571 STLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 650 (725)
Q Consensus 571 ~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlL 650 (725)
..++.+||||+|.+.|.|.. .+.+.++|+||+.+.||++.+
T Consensus 149 ------~~~~~vi~ngvd~~~~~~~~---------------------------------~~~~~i~~~Gr~~~~Kg~~~l 189 (335)
T cd03802 149 ------LPWVATVHNGIDLDDYPFRG---------------------------------PKGDYLLFLGRISPEKGPHLA 189 (335)
T ss_pred ------ccccEEecCCcChhhCCCCC---------------------------------CCCCEEEEEEeeccccCHHHH
Confidence 15789999999998776521 134689999999999999999
Q ss_pred HHHHHHhhcCCcEEEEEcCCCccc--------c---cH-------------HHHHHhcCeEEEcCC-cccchHHHHHHcC
Q 004879 651 RHAIYRTLELGGQFILLGSSPVPH--------I---QV-------------YPILLSSFSFLRKHI-FNICNLYIKLGQG 705 (725)
Q Consensus 651 ieA~~~L~~~~iqLVIvG~Gp~~~--------l---e~-------------~~iyAaADIfVlPS~-~EpfGLv~LEAMg 705 (725)
++|+.+ .+++|+++|+|+... . .. ..+|+.||++++||. .|+||++++|||+
T Consensus 190 i~~~~~---~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma 266 (335)
T cd03802 190 IRAARR---AGIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMA 266 (335)
T ss_pred HHHHHh---cCCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHh
Confidence 999865 478999999986431 0 00 178999999999998 5999999999997
Q ss_pred CCcccc-CCCCCcee
Q 004879 706 GDLTVN-NNCEPWLH 719 (725)
Q Consensus 706 ~~~~V~-~~~~G~l~ 719 (725)
++.||+ ++++|.-.
T Consensus 267 ~G~PvI~~~~~~~~e 281 (335)
T cd03802 267 CGTPVIAFRRGAVPE 281 (335)
T ss_pred cCCCEEEeCCCCchh
Confidence 776654 44555443
No 31
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.92 E-value=6.8e-24 Score=232.87 Aligned_cols=264 Identities=10% Similarity=0.086 Sum_probs=177.8
Q ss_pred eEEEEcCccCCC--CCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeee
Q 004879 334 HVIHIAAEMAPV--AKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVST 411 (725)
Q Consensus 334 kILhIs~E~~P~--~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~ 411 (725)
||++++++-.|+ ...||++++++++++.|.+ +|+|++-+..+.+..+ ..
T Consensus 4 ~~~~~~~~~~~~p~~~~g~ve~~~~~~~~~l~~---~~~~~~~~~~~~~~~~--------------------------~~ 54 (380)
T PRK15484 4 KIIFTVTPIFSIPPRGAAAVETWIYQVAKRTSI---PNRIACIKNPGYPEYT--------------------------KV 54 (380)
T ss_pred eEEEEeccCCCCCCccccHHHHHHHHhhhhccC---CeeEEEecCCCCCchh--------------------------hc
Confidence 899999996544 3489999999999999943 9999986655432110 01
Q ss_pred eCCeeEEEeCCCC-CCcccccCCCCCCCchhhhHHHHHHHHHHHHHHc-CCCceEEEECCCchhhHHHHHHHhhccCCCC
Q 004879 412 IEGLPVYFIEPHH-PDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQA-GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLN 489 (725)
Q Consensus 412 v~GI~V~~I~~~~-ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~-~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~ 489 (725)
.+|+.++.++... +...|.+ ++.. ....|+..++.++... +.++||||+|+....+ ..+... ..
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~--~~~~~~-----~~ 120 (380)
T PRK15484 55 NDNCDIHYIGFSRIYKRLFQK--WTRL-----DPLPYSQRILNIAHKFTITKDSVIVIHNSMKLY--RQIRER-----AP 120 (380)
T ss_pred cCCCceEEEEeccccchhhhh--hhcc-----CchhHHHHHHHHHHhcCCCCCcEEEEeCcHHhH--HHHHhh-----CC
Confidence 2455555553210 0000111 0110 1223455555555543 4679999999854322 222221 35
Q ss_pred CCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCc
Q 004879 490 SARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGL 569 (725)
Q Consensus 490 ~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL 569 (725)
++|+|+|+|+.. ... .+..++.++++|+..++.+.. .+
T Consensus 121 ~~~~v~~~h~~~-----~~~--------------------------------~~~~~~~ii~~S~~~~~~~~~-~~---- 158 (380)
T PRK15484 121 QAKLVMHMHNAF-----EPE--------------------------------LLDKNAKIIVPSQFLKKFYEE-RL---- 158 (380)
T ss_pred CCCEEEEEeccc-----Chh--------------------------------HhccCCEEEEcCHHHHHHHHh-hC----
Confidence 789999999752 000 112458899999988776654 11
Q ss_pred ccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHH
Q 004879 570 HSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHL 649 (725)
Q Consensus 570 ~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdl 649 (725)
+..++.+||||+|...|.|. .+..+++.+|+++ +.++|+|+||+.++||++.
T Consensus 159 ------~~~~i~vIpngvd~~~~~~~-------------------~~~~~~~~~~~~~---~~~~il~~Grl~~~Kg~~~ 210 (380)
T PRK15484 159 ------PNADISIVPNGFCLETYQSN-------------------PQPNLRQQLNISP---DETVLLYAGRISPDKGILL 210 (380)
T ss_pred ------CCCCEEEecCCCCHHHcCCc-------------------chHHHHHHhCCCC---CCeEEEEeccCccccCHHH
Confidence 24578999999998877663 1234677888863 5688999999999999999
Q ss_pred HHHHHHHhhc--CCcEEEEEcCCCccc----------ccH--------------------HHHHHhcCeEEEcCCc-ccc
Q 004879 650 IRHAIYRTLE--LGGQFILLGSSPVPH----------IQV--------------------YPILLSSFSFLRKHIF-NIC 696 (725)
Q Consensus 650 LieA~~~L~~--~~iqLVIvG~Gp~~~----------le~--------------------~~iyAaADIfVlPS~~-Epf 696 (725)
+++|+..+.+ .+++|+|+|+|+... +++ ..+|++||++|+||.+ |+|
T Consensus 211 Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f 290 (380)
T PRK15484 211 LMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEAF 290 (380)
T ss_pred HHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHhCCEEEeCCCCcccc
Confidence 9999999864 479999999876320 100 1889999999999985 999
Q ss_pred hHHHHHHcCCCccc
Q 004879 697 NLYIKLGQGGDLTV 710 (725)
Q Consensus 697 GLv~LEAMg~~~~V 710 (725)
|++++|||+++.||
T Consensus 291 ~~~~lEAma~G~PV 304 (380)
T PRK15484 291 CMVAVEAMAAGKPV 304 (380)
T ss_pred ccHHHHHHHcCCCE
Confidence 99999999665554
No 32
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.92 E-value=2.7e-23 Score=220.70 Aligned_cols=281 Identities=17% Similarity=0.158 Sum_probs=177.3
Q ss_pred eEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeC
Q 004879 334 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 413 (725)
Q Consensus 334 kILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~ 413 (725)
||++|+++++|. ..||++.++..|+++|+++||+|+|+++....... .....
T Consensus 1 ~i~~i~~~~~~~-~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~---------------------------~~~~~ 52 (363)
T cd04955 1 KIAIIGTRGIPA-KYGGFETFVEELAPRLVARGHEVTVYCRSPYPKQK---------------------------ETEYN 52 (363)
T ss_pred CeEEEecCcCCc-ccCcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCc---------------------------ccccC
Confidence 689998876554 47999999999999999999999999976432110 00135
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcE
Q 004879 414 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 493 (725)
Q Consensus 414 GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipi 493 (725)
|++++.++... .... ..+.+........++ ...++|+||.+.+...++.+. .. ..+.|+
T Consensus 53 ~i~~~~~~~~~-------~~~~------~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~-~~------~~~~~~ 111 (363)
T cd04955 53 GVRLIHIPAPE-------IGGL------GTIIYDILAILHALF-VKRDIDHVHALGPAIAPFLPL-LR------LKGKKV 111 (363)
T ss_pred CceEEEcCCCC-------ccch------hhhHHHHHHHHHHHh-ccCCeEEEEecCccHHHHHHH-HH------hcCCCE
Confidence 66666554210 0000 011111111122221 133455555544433222111 11 137899
Q ss_pred EEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCccccc
Q 004879 494 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTL 573 (725)
Q Consensus 494 V~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l 573 (725)
|+|+|+..+.... + +.... .-.....+.++..+|.|+++|+..++.+... ++
T Consensus 112 v~~~h~~~~~~~~----~---~~~~~-------------~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~-~~------- 163 (363)
T cd04955 112 VVNMDGLEWKRAK----W---GRPAK-------------RYLKFGEKLAVKFADRLIADSPGIKEYLKEK-YG------- 163 (363)
T ss_pred EEEccCcceeecc----c---ccchh-------------HHHHHHHHHHHhhccEEEeCCHHHHHHHHHh-cC-------
Confidence 9999987532110 0 00000 0001224566788999999999888877542 22
Q ss_pred ccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHH
Q 004879 574 NFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHA 653 (725)
Q Consensus 574 ~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA 653 (725)
... .+||||+|...+.+. ...++.++++ +.+.++|+||+.+.||++.+++|
T Consensus 164 ---~~~-~~i~ngv~~~~~~~~---------------------~~~~~~~~~~----~~~~i~~~G~~~~~Kg~~~li~a 214 (363)
T cd04955 164 ---RDS-TYIPYGADHVVSSEE---------------------DEILKKYGLE----PGRYYLLVGRIVPENNIDDLIEA 214 (363)
T ss_pred ---CCC-eeeCCCcChhhcchh---------------------hhhHHhcCCC----CCcEEEEEecccccCCHHHHHHH
Confidence 122 899999998765431 1234455654 23568899999999999999999
Q ss_pred HHHhhcCCcEEEEEcCCCccc-c----c-H------------------HHHHHhcCeEEEcCCc-ccchHHHHHHcCCCc
Q 004879 654 IYRTLELGGQFILLGSSPVPH-I----Q-V------------------YPILLSSFSFLRKHIF-NICNLYIKLGQGGDL 708 (725)
Q Consensus 654 ~~~L~~~~iqLVIvG~Gp~~~-l----e-~------------------~~iyAaADIfVlPS~~-EpfGLv~LEAMg~~~ 708 (725)
+..+.. +++|+++|+|+... + . . ..+|+.||++++||.. |+||++++|||+++.
T Consensus 215 ~~~l~~-~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~ 293 (363)
T cd04955 215 FSKSNS-GKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGC 293 (363)
T ss_pred HHhhcc-CceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCC
Confidence 998764 79999999985331 1 1 0 1789999999999998 999999999998888
Q ss_pred ccc-CCCCCceeee
Q 004879 709 TVN-NNCEPWLHHI 721 (725)
Q Consensus 709 ~V~-~~~~G~l~~~ 721 (725)
||+ ++++|.-.-+
T Consensus 294 PvI~s~~~~~~e~~ 307 (363)
T cd04955 294 PVLASDNPFNREVL 307 (363)
T ss_pred CEEEecCCccceee
Confidence 865 5555554433
No 33
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.92 E-value=2.1e-23 Score=221.20 Aligned_cols=263 Identities=17% Similarity=0.138 Sum_probs=179.3
Q ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeCCeeEEEeCCCCCC
Q 004879 347 KVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPD 426 (725)
Q Consensus 347 kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~GI~V~~I~~~~ps 426 (725)
..||++.++.+|+++|.+.||+|.|+++...... .+ ...|++++.+..
T Consensus 8 ~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~-----~~-----------------------~~~~~~~~~~~~---- 55 (355)
T cd03819 8 ESGGVERGTLELARALVERGHRSLVASAGGRLVA-----EL-----------------------EAEGSRHIKLPF---- 55 (355)
T ss_pred ccCcHHHHHHHHHHHHHHcCCEEEEEcCCCchHH-----HH-----------------------HhcCCeEEEccc----
Confidence 4699999999999999999999999986532110 01 012344433321
Q ss_pred cccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCC
Q 004879 427 KFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTA 506 (725)
Q Consensus 427 ~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~ 506 (725)
.. ...+ ....+......++++ .+||+||+|++..++.+.+... ..++|+|+++|+....
T Consensus 56 --~~-~~~~-------~~~~~~~~l~~~~~~--~~~dii~~~~~~~~~~~~~~~~------~~~~~~i~~~h~~~~~--- 114 (355)
T cd03819 56 --IS-KNPL-------RILLNVARLRRLIRE--EKVDIVHARSRAPAWSAYLAAR------RTRPPFVTTVHGFYSV--- 114 (355)
T ss_pred --cc-cchh-------hhHHHHHHHHHHHHH--cCCCEEEECCCchhHHHHHHHH------hcCCCEEEEeCCchhh---
Confidence 00 0011 111122333444543 5899999998776654322221 2479999999976311
Q ss_pred ChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCC
Q 004879 507 PAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNG 586 (725)
Q Consensus 507 p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNG 586 (725)
.. +.+..+..+|.++++|+.+++.+.. .++ .+..++.+||||
T Consensus 115 --~~---------------------------~~~~~~~~~~~vi~~s~~~~~~~~~-~~~--------~~~~k~~~i~ng 156 (355)
T cd03819 115 --NF---------------------------RYNAIMARGDRVIAVSNFIADHIRE-NYG--------VDPDRIRVIPRG 156 (355)
T ss_pred --HH---------------------------HHHHHHHhcCEEEEeCHHHHHHHHH-hcC--------CChhhEEEecCC
Confidence 00 1133456789999999988887764 222 245789999999
Q ss_pred ccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhc--CCcEE
Q 004879 587 IDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQF 664 (725)
Q Consensus 587 ID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~--~~iqL 664 (725)
+|...|.+.... ......+++++++++ +.++++|+||+.++||++.+++|+..+.+ .+++|
T Consensus 157 i~~~~~~~~~~~--------------~~~~~~~~~~~~~~~---~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l 219 (355)
T cd03819 157 VDLDRFDPGAVP--------------PERILALAREWPLPK---GKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHL 219 (355)
T ss_pred ccccccCccccc--------------hHHHHHHHHHcCCCC---CceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEE
Confidence 999888664210 012233678888763 66899999999999999999999999876 57999
Q ss_pred EEEcCCCccc-c----c---------H-----------HHHHHhcCeEEEcC-CcccchHHHHHHcCCCcccc-CCCCCc
Q 004879 665 ILLGSSPVPH-I----Q---------V-----------YPILLSSFSFLRKH-IFNICNLYIKLGQGGDLTVN-NNCEPW 717 (725)
Q Consensus 665 VIvG~Gp~~~-l----e---------~-----------~~iyAaADIfVlPS-~~EpfGLv~LEAMg~~~~V~-~~~~G~ 717 (725)
+++|.|+... + . . ..+|++||++++|| .+|+||++++|||+++.||+ ++.+|.
T Consensus 220 ~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~~ 299 (355)
T cd03819 220 LIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGGA 299 (355)
T ss_pred EEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCCc
Confidence 9999986431 1 0 0 18999999999999 79999999999997777754 555554
No 34
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.92 E-value=6.1e-24 Score=230.73 Aligned_cols=272 Identities=17% Similarity=0.186 Sum_probs=169.3
Q ss_pred eEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeC
Q 004879 334 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 413 (725)
Q Consensus 334 kILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~ 413 (725)
||+|+++.+ ..||++.++.+++++|.+.||+|++++|.-...... .. .. +. ....
T Consensus 1 ki~~~~~~~----~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~----~~-----------~~-----~~-~~~~ 55 (372)
T cd03792 1 KVLHVNSTP----YGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEFFN----VT-----------KK-----FH-NALQ 55 (372)
T ss_pred CeEEEeCCC----CCCcHHHHHHHHHHHHHHcCCCceEEecCCChhHHH----HH-----------HH-----hh-Hhhc
Confidence 689998764 369999999999999999999999999853221000 00 00 00 0011
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHH--HcCCCceEEEECCCchhhHHHHHHHhhccCCCCCC
Q 004879 414 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLL--QAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSA 491 (725)
Q Consensus 414 GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~--~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~i 491 (725)
|.+. .++ .. .+. .|.......+. ....+|||||+|++....+ +.++. ..++
T Consensus 56 g~~~-~~~-----------------~~-~~~-~~~~~~~~~~~~~~~~~~~Dvv~~h~~~~~~~-~~~~~------~~~~ 108 (372)
T cd03792 56 GADI-ELS-----------------EE-EKE-IYLEWNEENAERPLLDLDADVVVIHDPQPLAL-PLFKK------KRGR 108 (372)
T ss_pred CCCC-CCC-----------------HH-HHH-HHHHHHHHHhccccccCCCCEEEECCCCchhH-HHhhh------cCCC
Confidence 2111 010 00 011 11111111111 1135899999999874332 22211 2378
Q ss_pred cEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCccc
Q 004879 492 RVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHS 571 (725)
Q Consensus 492 piV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~ 571 (725)
|+|+++|+.... +... ...+.+..+..+|.++++|+.+.. .++
T Consensus 109 ~~i~~~H~~~~~---~~~~------------------------~~~~~~~~~~~~d~~i~~~~~~~~--------~~~-- 151 (372)
T cd03792 109 PWIWRCHIDLSS---PNRR------------------------VWDFLQPYIEDYDAAVFHLPEYVP--------PQV-- 151 (372)
T ss_pred eEEEEeeeecCC---CcHH------------------------HHHHHHHHHHhCCEEeecHHHhcC--------CCC--
Confidence 999999975210 0000 012335556778998888843321 111
Q ss_pred ccccCCCcEEEEeCCccCCC-CCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHH
Q 004879 572 TLNFHSKKFVGILNGIDTDA-WNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 650 (725)
Q Consensus 572 ~l~~~~~Kv~vIpNGID~~~-f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlL 650 (725)
...++ +||||||... +.. .++ +..+..+++++|+++ ++++|+++||+.++||++.+
T Consensus 152 ----~~~~~-vipngvd~~~~~~~--------~~~-------~~~~~~~~~~~~~~~---~~~~i~~vgrl~~~Kg~~~l 208 (372)
T cd03792 152 ----PPRKV-IIPPSIDPLSGKNR--------ELS-------PADIEYILEKYGIDP---ERPYITQVSRFDPWKDPFGV 208 (372)
T ss_pred ----CCceE-EeCCCCCCCccccC--------CCC-------HHHHHHHHHHhCCCC---CCcEEEEEeccccccCcHHH
Confidence 23445 9999999642 111 111 123456788899873 67999999999999999999
Q ss_pred HHHHHHhhc--CCcEEEEEcCCCccc------ccH----------------------H--HHHHhcCeEEEcCCcccchH
Q 004879 651 RHAIYRTLE--LGGQFILLGSSPVPH------IQV----------------------Y--PILLSSFSFLRKHIFNICNL 698 (725)
Q Consensus 651 ieA~~~L~~--~~iqLVIvG~Gp~~~------le~----------------------~--~iyAaADIfVlPS~~EpfGL 698 (725)
++|+..+.+ .+++|+++|+|+... +++ . .+|++||+|++||.+|+||+
T Consensus 209 l~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~ 288 (372)
T cd03792 209 IDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGL 288 (372)
T ss_pred HHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCH
Confidence 999998875 479999999986420 000 0 78999999999999999999
Q ss_pred HHHHHcCCCcccc-CCCCCc
Q 004879 699 YIKLGQGGDLTVN-NNCEPW 717 (725)
Q Consensus 699 v~LEAMg~~~~V~-~~~~G~ 717 (725)
+++|||+++.||+ .+++|.
T Consensus 289 ~~lEA~a~G~Pvv~s~~~~~ 308 (372)
T cd03792 289 TVTEALWKGKPVIAGPVGGI 308 (372)
T ss_pred HHHHHHHcCCCEEEcCCCCc
Confidence 9999997666643 344443
No 35
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.91 E-value=1.1e-22 Score=212.60 Aligned_cols=287 Identities=20% Similarity=0.243 Sum_probs=179.9
Q ss_pred eEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeC
Q 004879 334 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 413 (725)
Q Consensus 334 kILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~ 413 (725)
||++|++.++|. .||.+.++..|+++|.+.||+|+|+++......... .. .
T Consensus 1 kIl~i~~~~~~~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~--~~-------------------------~ 51 (375)
T cd03821 1 KILHVIPSFDPK--YGGPVRVVLNLSKALAKLGHEVTVATTDAGGDPLLV--AL-------------------------N 51 (375)
T ss_pred CeEEEcCCCCcc--cCCeehHHHHHHHHHHhcCCcEEEEecCCCCccchh--hc-------------------------c
Confidence 699999988864 799999999999999999999999997754321100 00 0
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECC-CchhhHHHHHHHhhccCCCCCCc
Q 004879 414 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHD-WQTAFVAPLYWDLYVPKGLNSAR 492 (725)
Q Consensus 414 GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hd-w~sa~vapl~~~~ya~~gl~~ip 492 (725)
+........... .... .. . ..|.......+.....+||+||+|+ |............ ..++|
T Consensus 52 ~~~~~~~~~~~~--~~~~--~~-------~-~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~-----~~~~~ 114 (375)
T cd03821 52 GVPVKLFSINVA--YGLN--LA-------R-YLFPPSLLAWLRLNIREADIVHVHGLWSYPSLAAARAAR-----KYGIP 114 (375)
T ss_pred Cceeeecccchh--hhhh--hh-------h-hccChhHHHHHHHhCCCCCEEEEecccchHHHHHHHHHH-----HhCCC
Confidence 000000000000 0000 00 0 0011111111222246899999998 3322221111111 24789
Q ss_pred EEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccc
Q 004879 493 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHST 572 (725)
Q Consensus 493 iV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~ 572 (725)
+|+++|+.......+...+. . ........+..+..++.++++|..........
T Consensus 115 ~i~~~~~~~~~~~~~~~~~~-------------~-----~~~~~~~~~~~~~~~~~i~~~s~~~~~~~~~~--------- 167 (375)
T cd03821 115 YVVSPHGMLDPWALPHKALK-------------K-----RLAWFLFERRLLQAAAAVHATSEQEAAEIRRL--------- 167 (375)
T ss_pred EEEEccccccccccccchhh-------------h-----HHHHHHHHHHHHhcCCEEEECCHHHHHHHHhh---------
Confidence 99999986321110000000 0 00011233556677899999997666555431
Q ss_pred cccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHH
Q 004879 573 LNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRH 652 (725)
Q Consensus 573 l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLie 652 (725)
....++.+||||+|.+.|.+... ... ++.++.+ .+.++++|+||+.+.||++.+++
T Consensus 168 --~~~~~~~vi~~~~~~~~~~~~~~------------------~~~-~~~~~~~---~~~~~i~~~G~~~~~K~~~~li~ 223 (375)
T cd03821 168 --GLKAPIAVIPNGVDIPPFAALPS------------------RGR-RRKFPIL---PDKRIILFLGRLHPKKGLDLLIE 223 (375)
T ss_pred --CCcccEEEcCCCcChhccCcchh------------------hhh-hhhccCC---CCCcEEEEEeCcchhcCHHHHHH
Confidence 13568999999999988876421 111 5666665 36789999999999999999999
Q ss_pred HHHHhhc--CCcEEEEEcCCCccc---cc---H-------------------HHHHHhcCeEEEcCCcccchHHHHHHcC
Q 004879 653 AIYRTLE--LGGQFILLGSSPVPH---IQ---V-------------------YPILLSSFSFLRKHIFNICNLYIKLGQG 705 (725)
Q Consensus 653 A~~~L~~--~~iqLVIvG~Gp~~~---le---~-------------------~~iyAaADIfVlPS~~EpfGLv~LEAMg 705 (725)
|+..+.+ .+++|+++|.++... ++ . ..+|+.||++|+||.+|+||++++|||+
T Consensus 224 a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama 303 (375)
T cd03821 224 AFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALA 303 (375)
T ss_pred HHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHh
Confidence 9999886 489999999875321 10 0 1789999999999999999999999998
Q ss_pred CCcccc-CCCCCc
Q 004879 706 GDLTVN-NNCEPW 717 (725)
Q Consensus 706 ~~~~V~-~~~~G~ 717 (725)
++.||+ ++.+|+
T Consensus 304 ~G~PvI~~~~~~~ 316 (375)
T cd03821 304 CGTPVVTTDKVPW 316 (375)
T ss_pred cCCCEEEcCCCCH
Confidence 888865 445554
No 36
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.91 E-value=1.4e-22 Score=222.28 Aligned_cols=292 Identities=17% Similarity=0.175 Sum_probs=174.6
Q ss_pred eEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeC
Q 004879 334 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 413 (725)
Q Consensus 334 kILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~ 413 (725)
|||+|...|++- ..+|+++|+++||+|+|++++-..... .
T Consensus 1 ~il~~~~~~p~~---------~~~la~~L~~~G~~v~~~~~~~~~~~~-------------------------------~ 40 (396)
T cd03818 1 RILFVHQNFPGQ---------FRHLAPALAAQGHEVVFLTEPNAAPPP-------------------------------G 40 (396)
T ss_pred CEEEECCCCchh---------HHHHHHHHHHCCCEEEEEecCCCCCCC-------------------------------C
Confidence 689998876431 356999999999999999987442110 0
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHH---HcCCCceEEEECCCchhhHHHHHHHhhccCCCCC
Q 004879 414 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLL---QAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNS 490 (725)
Q Consensus 414 GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~---~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ 490 (725)
|++++.+.+.... ....+++...+.......+++.+.+. ..+++|||||+|..... .+++... +.+
T Consensus 41 ~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdvi~~h~~~~~---~~~l~~~----~~~ 109 (396)
T cd03818 41 GVRVVRYRPPRGP----TSGTHPYLREFEEAVLRGQAVARALLALRAKGFRPDVIVAHPGWGE---TLFLKDV----WPD 109 (396)
T ss_pred CeeEEEecCCCCC----CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccch---hhhHHHh----CCC
Confidence 3444444321100 01222222233332222333333222 34779999999964322 1223222 347
Q ss_pred CcEEEEeeCCcc-cCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCc
Q 004879 491 ARVCFTCHNFEY-QGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGL 569 (725)
Q Consensus 491 ipiV~TiHn~~~-qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL 569 (725)
+|+|.++|-+.. .|.. .+.++......... .....+.......+..||.||++|+..++.+...
T Consensus 110 ~~~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~~------ 174 (396)
T cd03818 110 APLIGYFEFYYRAEGAD-------VGFDPEFPPSLDDA--LRLRNRNALILLALAQADAGVSPTRWQRSTFPAE------ 174 (396)
T ss_pred CCEEEEEeeeecCCCCC-------CCCCCCCCCchhHH--HHHHHhhhHhHHHHHhCCEEECCCHHHHhhCcHh------
Confidence 899988874320 1100 01111100000000 0001111124567889999999999877765431
Q ss_pred ccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeec-CcCCCCHH
Q 004879 570 HSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITR-LVPQKGVH 648 (725)
Q Consensus 570 ~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGR-L~~qKGvd 648 (725)
...++.+||||||.+.|.|... .....+...+++ ++.++|+|+|| +.++||++
T Consensus 175 ------~~~ki~vI~ngvd~~~f~~~~~-----------------~~~~~~~~~~~~---~~~~~i~~vgR~l~~~Kg~~ 228 (396)
T cd03818 175 ------LRSRISVIHDGIDTDRLRPDPQ-----------------ARLRLPNGRVLT---PGDEVITFVARNLEPYRGFH 228 (396)
T ss_pred ------hccceEEeCCCccccccCCCch-----------------hhhcccccccCC---CCCeEEEEECCCcccccCHH
Confidence 1368999999999998887521 011122223333 35689999998 99999999
Q ss_pred HHHHHHHHhhc--CCcEEEEEcCCCc---------c----c----ccH------------------HHHHHhcCeEEEcC
Q 004879 649 LIRHAIYRTLE--LGGQFILLGSSPV---------P----H----IQV------------------YPILLSSFSFLRKH 691 (725)
Q Consensus 649 lLieA~~~L~~--~~iqLVIvG~Gp~---------~----~----le~------------------~~iyAaADIfVlPS 691 (725)
.+++|+..+.+ .+++|+|+|++.. + . +.. ..+|+.||++|+||
T Consensus 229 ~ll~a~~~l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~l~~adv~v~~s 308 (396)
T cd03818 229 VFMRALPRLLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQVSDVHVYLT 308 (396)
T ss_pred HHHHHHHHHHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHHHHHHHHhCcEEEEcC
Confidence 99999998875 4899999997320 0 0 000 07999999999999
Q ss_pred CcccchHHHHHHcCCCcccc-CCCCCc
Q 004879 692 IFNICNLYIKLGQGGDLTVN-NNCEPW 717 (725)
Q Consensus 692 ~~EpfGLv~LEAMg~~~~V~-~~~~G~ 717 (725)
..|++|++++|||+++.||+ ++++|.
T Consensus 309 ~~e~~~~~llEAmA~G~PVIas~~~g~ 335 (396)
T cd03818 309 YPFVLSWSLLEAMACGCLVVGSDTAPV 335 (396)
T ss_pred cccccchHHHHHHHCCCCEEEcCCCCc
Confidence 99999999999997776643 444443
No 37
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.91 E-value=7.3e-24 Score=224.62 Aligned_cols=282 Identities=19% Similarity=0.259 Sum_probs=194.3
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeee
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 412 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v 412 (725)
++|+++++.|+|. .||++.+++.|++.|.+.||.|.|++-.|+... .++ ..-
T Consensus 1 ~~i~mVsdff~P~--~ggveshiy~lSq~li~lghkVvvithayg~r~-----gir---------------------ylt 52 (426)
T KOG1111|consen 1 SRILMVSDFFYPS--TGGVESHIYALSQCLIRLGHKVVVITHAYGNRV-----GIR---------------------YLT 52 (426)
T ss_pred CcceeeCcccccC--CCChhhhHHHhhcchhhcCCeEEEEeccccCcc-----cee---------------------eec
Confidence 5799999999996 799999999999999999999999999988531 111 123
Q ss_pred CCeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCc
Q 004879 413 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSAR 492 (725)
Q Consensus 413 ~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ip 492 (725)
.|++||+++.. .+-+...++. -+..+..| +.+ ++ +++..|+|.|+.+++++ --.+. ++ +..|.+
T Consensus 53 ~glkVyylp~~----v~~n~tT~pt--v~~~~Pll-r~i--~l---rE~I~ivhghs~fS~la-he~l~-ha--rtMGlk 116 (426)
T KOG1111|consen 53 NGLKVYYLPAV----VGYNQTTFPT--VFSDFPLL-RPI--LL---RERIEIVHGHSPFSYLA-HEALM-HA--RTMGLK 116 (426)
T ss_pred CCceEEEEeee----eeecccchhh--hhccCccc-chh--hh---hhceEEEecCChHHHHH-HHHHH-HH--HhcCce
Confidence 56888887631 1111211110 00001111 111 12 36899999999877664 22221 22 245799
Q ss_pred EEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccc
Q 004879 493 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHST 572 (725)
Q Consensus 493 iV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~ 572 (725)
+|+|=|.+. |..+.... + .. ..++..+...|.+||||.+-++...- ...
T Consensus 117 tVfTdHSlf--Gfad~~si---------------~-----~n--~ll~~sL~~id~~IcVshtskentvl-------r~~ 165 (426)
T KOG1111|consen 117 TVFTDHSLF--GFADIGSI---------------L-----TN--KLLPLSLANIDRIICVSHTSKENTVL-------RGA 165 (426)
T ss_pred EEEeccccc--cccchhhh---------------h-----hc--ceeeeeecCCCcEEEEeecCCCceEE-------Eec
Confidence 999999863 21111000 0 00 12344566789999999765554321 111
Q ss_pred cccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHH
Q 004879 573 LNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRH 652 (725)
Q Consensus 573 l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLie 652 (725)
..+.|+.+|||.+++..|.|.... .+ ..+...+.++|||.++||+|++++
T Consensus 166 --L~p~kvsvIPnAv~~~~f~P~~~~--------------------------~~--S~~i~~ivv~sRLvyrKGiDll~~ 215 (426)
T KOG1111|consen 166 --LAPAKVSVIPNAVVTHTFTPDAAD--------------------------KP--SADIITIVVASRLVYRKGIDLLLE 215 (426)
T ss_pred --cCHhHeeeccceeeccccccCccc--------------------------cC--CCCeeEEEEEeeeeeccchHHHHH
Confidence 247899999999999999994210 01 123367899999999999999999
Q ss_pred HHHHhhc--CCcEEEEEcCCCccc-ccH----------------------HHHHHhcCeEEEcCCcccchHHHHHHcCCC
Q 004879 653 AIYRTLE--LGGQFILLGSSPVPH-IQV----------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGD 707 (725)
Q Consensus 653 A~~~L~~--~~iqLVIvG~Gp~~~-le~----------------------~~iyAaADIfVlPS~~EpfGLv~LEAMg~~ 707 (725)
+++++.+ ++++|+|+|+||.+. +++ ..+|..-|+|+.||..|+||++++|||.++
T Consensus 216 iIp~vc~~~p~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSlTEafc~~ivEAaScG 295 (426)
T KOG1111|consen 216 IIPSVCDKHPEVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMVIVEAASCG 295 (426)
T ss_pred HHHHHHhcCCCeeEEEecCCcccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccHHHHHHHHHHHHHHhCC
Confidence 9999986 589999999999542 221 189999999999999999999999999888
Q ss_pred cc-ccCCCCCcee
Q 004879 708 LT-VNNNCEPWLH 719 (725)
Q Consensus 708 ~~-V~~~~~G~l~ 719 (725)
+. |.+.++|...
T Consensus 296 L~VVsTrVGGIpe 308 (426)
T KOG1111|consen 296 LPVVSTRVGGIPE 308 (426)
T ss_pred CEEEEeecCCccc
Confidence 77 5688998643
No 38
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.91 E-value=2.1e-22 Score=209.74 Aligned_cols=279 Identities=19% Similarity=0.232 Sum_probs=189.2
Q ss_pred eEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeC
Q 004879 334 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 413 (725)
Q Consensus 334 kILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~ 413 (725)
||+++++.+.| ||.+.++..|+++|.+.||+|++++......... .+ ...
T Consensus 1 ~i~~i~~~~~~----gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~---~~-----------------------~~~ 50 (365)
T cd03807 1 KVLHVITGLDV----GGAERMLVRLLKGLDRDRFEHVVISLTDRGELGE---EL-----------------------EEA 50 (365)
T ss_pred CeEEEEeeccC----ccHHHHHHHHHHHhhhccceEEEEecCcchhhhH---HH-----------------------Hhc
Confidence 68999988754 9999999999999999999999998653211000 00 013
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcE
Q 004879 414 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 493 (725)
Q Consensus 414 GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipi 493 (725)
|++++.+.... ... . ..+......+++ ..+||+||+|.+++.+.+... ... ..++|+
T Consensus 51 ~i~v~~~~~~~---------~~~---~----~~~~~~~~~~~~--~~~~div~~~~~~~~~~~~~~-~~~----~~~~~~ 107 (365)
T cd03807 51 GVPVYCLGKRP---------GRP---D----PGALLRLYKLIR--RLRPDVVHTWMYHADLYGGLA-ARL----AGVPPV 107 (365)
T ss_pred CCeEEEEeccc---------ccc---c----HHHHHHHHHHHH--hhCCCEEEeccccccHHHHHH-HHh----cCCCcE
Confidence 55665553210 000 0 011222334444 358999999988766653322 221 147899
Q ss_pred EEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCccccc
Q 004879 494 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTL 573 (725)
Q Consensus 494 V~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l 573 (725)
++++|+...... ... . .....+.+.....+|.++++|+...+.+... +
T Consensus 108 i~~~~~~~~~~~---~~~------~--------------~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~--~------- 155 (365)
T cd03807 108 IWGIRHSDLDLG---KKS------T--------------RLVARLRRLLSSFIPLIVANSAAAAEYHQAI--G------- 155 (365)
T ss_pred EEEecCCccccc---chh------H--------------hHHHHHHHHhccccCeEEeccHHHHHHHHHc--C-------
Confidence 999998753210 000 0 0001123444567889999999887776542 1
Q ss_pred ccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHH
Q 004879 574 NFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHA 653 (725)
Q Consensus 574 ~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA 653 (725)
....++.++|||+|...|.+... .+..+++.+|+++ +.++++++||+.+.||++.+++|
T Consensus 156 -~~~~~~~vi~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~---~~~~i~~~G~~~~~K~~~~li~a 214 (365)
T cd03807 156 -YPPKKIVVIPNGVDTERFSPDLD-----------------ARARLREELGLPE---DTFLIGIVARLHPQKDHATLLRA 214 (365)
T ss_pred -CChhheeEeCCCcCHHhcCCccc-----------------chHHHHHhcCCCC---CCeEEEEecccchhcCHHHHHHH
Confidence 23568899999999887766421 2345667888873 66899999999999999999999
Q ss_pred HHHhhc--CCcEEEEEcCCCccc----ccH------------------HHHHHhcCeEEEcCCcccchHHHHHHcCCCcc
Q 004879 654 IYRTLE--LGGQFILLGSSPVPH----IQV------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLT 709 (725)
Q Consensus 654 ~~~L~~--~~iqLVIvG~Gp~~~----le~------------------~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~ 709 (725)
+..+.+ .+++|+++|.|+... ... ..+|+.||++++||.+|+||++++|||+++.|
T Consensus 215 ~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~P 294 (365)
T cd03807 215 AALLLKKFPNARLLLVGDGPDRANLELLALKELGLEDKVILLGERSDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLP 294 (365)
T ss_pred HHHHHHhCCCeEEEEecCCcchhHHHHHHHHhcCCCceEEEccccccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCC
Confidence 998875 479999999986431 111 18999999999999999999999999988877
Q ss_pred cc-CCCCCce
Q 004879 710 VN-NNCEPWL 718 (725)
Q Consensus 710 V~-~~~~G~l 718 (725)
|+ ++.+|.-
T Consensus 295 vI~~~~~~~~ 304 (365)
T cd03807 295 VVATDVGDNA 304 (365)
T ss_pred EEEcCCCChH
Confidence 65 4555543
No 39
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.90 E-value=4.6e-22 Score=210.46 Aligned_cols=268 Identities=18% Similarity=0.180 Sum_probs=174.8
Q ss_pred eEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeC
Q 004879 334 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 413 (725)
Q Consensus 334 kILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~ 413 (725)
||++|+..|+|. .||.+.++.+|+++|.+.||+|+|+++......... ...
T Consensus 1 kil~i~~~~~p~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~---------------------------~~~ 51 (357)
T cd03795 1 RVLHVGKFYPPD--RGGIEQVIRDLAEGLAARGIEVAVLCASPEPKGRDE---------------------------ERN 51 (357)
T ss_pred CeeEecCCCCCC--CCcHHHHHHHHHHHHHhCCCceEEEecCCCCcchhh---------------------------hcc
Confidence 799999998886 799999999999999999999999987643221100 011
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcE
Q 004879 414 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 493 (725)
Q Consensus 414 GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipi 493 (725)
+++++.+.. ++.. ..+.. ...++. .++....+|||||+|..........++ . ..++|+
T Consensus 52 ~~~~~~~~~-----~~~~-~~~~~-----~~~~~~-----~~~~~~~~~Dii~~~~~~~~~~~~~~~---~---~~~~~~ 109 (357)
T cd03795 52 GHRVIRAPS-----LLNV-ASTPF-----SPSFFK-----QLKKLAKKADVIHLHFPNPLADLALLL---L---PRKKPV 109 (357)
T ss_pred CceEEEeec-----cccc-ccccc-----cHHHHH-----HHHhcCCCCCEEEEecCcchHHHHHHH---h---ccCceE
Confidence 222222221 0000 00000 001111 111225689999999754332211111 1 147899
Q ss_pred EEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCccccc
Q 004879 494 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTL 573 (725)
Q Consensus 494 V~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l 573 (725)
++++|+..+.... + ......+.+..+..||.|+++|+.+.+.+... +
T Consensus 110 i~~~h~~~~~~~~----~--------------------~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~~-~-------- 156 (357)
T cd03795 110 VVHWHSDIVKQKL----L--------------------LKLYRPLQRRFLRRADAIVATSPNYAETSPVL-R-------- 156 (357)
T ss_pred EEEEcChhhccch----h--------------------hhhhhHHHHHHHHhcCEEEeCcHHHHHHHHHh-c--------
Confidence 9999975321110 0 00011234667889999999999988766542 1
Q ss_pred ccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHH
Q 004879 574 NFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHA 653 (725)
Q Consensus 574 ~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA 653 (725)
....++.+||||+|...|.+... ++. .....+ .+.+.|+|+||+.+.||++.+++|
T Consensus 157 -~~~~~~~~i~~gi~~~~~~~~~~-----------------~~~---~~~~~~---~~~~~i~~~G~~~~~K~~~~li~a 212 (357)
T cd03795 157 -RFRDKVRVIPLGLDPARYPRPDA-----------------LEE---AIWRRA---AGRPFFLFVGRLVYYKGLDVLLEA 212 (357)
T ss_pred -CCccceEEecCCCChhhcCCcch-----------------hhh---HhhcCC---CCCcEEEEecccccccCHHHHHHH
Confidence 12368899999999988766421 111 122222 356899999999999999999999
Q ss_pred HHHhhcCCcEEEEEcCCCccc-ccH----------------------HHHHHhcCeEEEcCC--cccchHHHHHHcCCCc
Q 004879 654 IYRTLELGGQFILLGSSPVPH-IQV----------------------YPILLSSFSFLRKHI--FNICNLYIKLGQGGDL 708 (725)
Q Consensus 654 ~~~L~~~~iqLVIvG~Gp~~~-le~----------------------~~iyAaADIfVlPS~--~EpfGLv~LEAMg~~~ 708 (725)
+..+. +++|+++|+|+... +++ ..+|+.||++++||. .|+||++++|||+++.
T Consensus 213 ~~~l~--~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~ 290 (357)
T cd03795 213 AAALP--DAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGK 290 (357)
T ss_pred HHhcc--CcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCC
Confidence 99886 79999999987532 110 179999999999996 5999999999997776
Q ss_pred ccc
Q 004879 709 TVN 711 (725)
Q Consensus 709 ~V~ 711 (725)
||+
T Consensus 291 Pvi 293 (357)
T cd03795 291 PVI 293 (357)
T ss_pred CEE
Confidence 654
No 40
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.90 E-value=6.1e-22 Score=207.43 Aligned_cols=280 Identities=19% Similarity=0.204 Sum_probs=181.1
Q ss_pred eEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeC
Q 004879 334 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 413 (725)
Q Consensus 334 kILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~ 413 (725)
||++++..|+|. .||.+..+..++++|.+.||+|+|+++......... . ..
T Consensus 1 kil~~~~~~~p~--~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~----------------~-----------~~ 51 (374)
T cd03817 1 KIGIFTDTYLPQ--VNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEE----------------E-----------VV 51 (374)
T ss_pred CeeEeehhccCC--CCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCccc----------------c-----------cc
Confidence 699999988885 799999999999999999999999998865432110 0 00
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcE
Q 004879 414 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 493 (725)
Q Consensus 414 GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipi 493 (725)
++....... . ...+ .. ..+ .+.......++ ..+||+||+|+..........+.. ..++|+
T Consensus 52 ~~~~~~~~~--~--~~~~--~~------~~~-~~~~~~~~~~~--~~~~Div~~~~~~~~~~~~~~~~~-----~~~~~~ 111 (374)
T cd03817 52 VVRPFRVPT--F--KYPD--FR------LPL-PIPRALIIILK--ELGPDIVHTHTPFSLGLLGLRVAR-----KLGIPV 111 (374)
T ss_pred ccccccccc--c--hhhh--hh------ccc-cHHHHHHHHHh--hcCCCEEEECCchhhhhHHHHHHH-----HcCCCE
Confidence 000000000 0 0000 00 000 11122222333 468999999975432211122211 247999
Q ss_pred EEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccch-hhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccc
Q 004879 494 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRI-NPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHST 572 (725)
Q Consensus 494 V~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~i-n~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~ 572 (725)
|+++|+... .+ .......... . ..... .+.+..+..+|.++++|+.+++.+.. . +
T Consensus 112 i~~~~~~~~--~~----~~~~~~~~~~-------~---~~~~~~~~~~~~~~~~d~i~~~s~~~~~~~~~-~-~------ 167 (374)
T cd03817 112 VATYHTMYE--DY----THYVPLGRLL-------A---RAVVRRKLSRRFYNRCDAVIAPSEKIADLLRE-Y-G------ 167 (374)
T ss_pred EEEecCCHH--HH----HHHHhcccch-------h---HHHHHHHHHHHHhhhCCEEEeccHHHHHHHHh-c-C------
Confidence 999998631 00 0000000000 0 00111 35577788999999999987776654 1 1
Q ss_pred cccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHH
Q 004879 573 LNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRH 652 (725)
Q Consensus 573 l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLie 652 (725)
...++.++|||+|...|.+.. +...++.+++. ++.+.|+|+||+.+.||++.+++
T Consensus 168 ---~~~~~~vi~~~~~~~~~~~~~-------------------~~~~~~~~~~~---~~~~~i~~~G~~~~~k~~~~l~~ 222 (374)
T cd03817 168 ---VKRPIEVIPTGIDLDRFEPVD-------------------GDDERRKLGIP---EDEPVLLYVGRLAKEKNIDFLIR 222 (374)
T ss_pred ---CCCceEEcCCccchhccCccc-------------------hhHHHHhcCCC---CCCeEEEEEeeeecccCHHHHHH
Confidence 234689999999998776642 11225666665 25688999999999999999999
Q ss_pred HHHHhhc--CCcEEEEEcCCCccc-cc--------------------H--HHHHHhcCeEEEcCCcccchHHHHHHcCCC
Q 004879 653 AIYRTLE--LGGQFILLGSSPVPH-IQ--------------------V--YPILLSSFSFLRKHIFNICNLYIKLGQGGD 707 (725)
Q Consensus 653 A~~~L~~--~~iqLVIvG~Gp~~~-le--------------------~--~~iyAaADIfVlPS~~EpfGLv~LEAMg~~ 707 (725)
|+..+.+ .+++|+++|.|+... ++ . ..+|+.||++++||..|++|++++|||+++
T Consensus 223 ~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g 302 (374)
T cd03817 223 AFARLLKEEPDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFASTTETQGLVLLEAMAAG 302 (374)
T ss_pred HHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEecccccCcChHHHHHHHcC
Confidence 9998875 579999999987431 11 0 179999999999999999999999999877
Q ss_pred cccc
Q 004879 708 LTVN 711 (725)
Q Consensus 708 ~~V~ 711 (725)
.||+
T Consensus 303 ~PvI 306 (374)
T cd03817 303 LPVV 306 (374)
T ss_pred CcEE
Confidence 7755
No 41
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.90 E-value=8.1e-22 Score=231.07 Aligned_cols=292 Identities=15% Similarity=0.093 Sum_probs=171.0
Q ss_pred CCCCC-eEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCC------------eEEEEeeCCCC--Cccccccccccccee
Q 004879 329 ISSGL-HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGH------------LVEIVLPKYDC--MQYDRIDDLRALDVV 393 (725)
Q Consensus 329 ~~~~M-kILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GH------------eV~VItP~y~~--l~~~~v~~L~~l~~~ 393 (725)
+.+|. ||+|+.... ..||.+.++.+|+.+|.+.|. .+.|++..... .+..-...+
T Consensus 277 ~~~~~~rIl~vi~sl----~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L------ 346 (694)
T PRK15179 277 PESFVGPVLMINGSL----GAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATL------ 346 (694)
T ss_pred CCCCcceEEEEeCCC----CCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHHH------
Confidence 45566 999998864 469999999999999999854 34454421110 000000001
Q ss_pred eeeccCCcceeeeeEeeeeCCeeEEEeCCCCCCccccc--CCCCCCC-----chhhhHHHHHHHHHHHHHHcCCCceEEE
Q 004879 394 VESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWR--GQFYGEH-----DDFRRFSFFSRAALELLLQAGKQPDIIH 466 (725)
Q Consensus 394 i~~~f~g~~~~~rV~~~~v~GI~V~~I~~~~ps~~F~r--~~~Yg~~-----dd~~r~~~FsravlelL~~~~~kPDIIH 466 (725)
...|++|+.+... +. .+.+ ....+.. +-+.....+.+.+.+++++ .+|||||
T Consensus 347 -----------------~~~Gv~v~~l~~~-~~-~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~--~kpDIVH 405 (694)
T PRK15179 347 -----------------ADAGIPVSVYSDM-QA-WGGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRS--SVPSVVH 405 (694)
T ss_pred -----------------HhCCCeEEEeccC-Cc-cCcccccccchhhHHHhhhcchhHHHHHHHHHHHHHH--cCCcEEE
Confidence 1245666655321 10 0000 0000000 0000112234555566664 5899999
Q ss_pred ECCCchhhHHHHHHHhhccCCCCCCcEEE-EeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhh
Q 004879 467 CHDWQTAFVAPLYWDLYVPKGLNSARVCF-TCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVF 545 (725)
Q Consensus 467 ~Hdw~sa~vapl~~~~ya~~gl~~ipiV~-TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~ 545 (725)
+|...+.+++.+. .. +.++|+|+ |+|++... ..+ ..+. +. .......+..
T Consensus 406 ~h~~~a~~lg~lA-a~-----~~gvPvIv~t~h~~~~~-~~~-~~~~-------------------~~--~~~l~~~l~~ 456 (694)
T PRK15179 406 IWQDGSIFACALA-AL-----LAGVPRIVLSVRTMPPV-DRP-DRYR-------------------VE--YDIIYSELLK 456 (694)
T ss_pred EeCCcHHHHHHHH-HH-----HcCCCEEEEEeCCCccc-cch-hHHH-------------------HH--HHHHHHHHHh
Confidence 9998776654332 22 24688766 66765311 000 0000 00 0000111223
Q ss_pred c--cEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHc
Q 004879 546 S--NIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHL 623 (725)
Q Consensus 546 A--D~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~l 623 (725)
+ +.++++|...++.+... ++ .+..++.+||||||...|.|... .+. .+..+
T Consensus 457 ~~~~i~Vs~S~~~~~~l~~~-~g--------~~~~kI~VI~NGVd~~~f~~~~~-----------------~~~-~~~~~ 509 (694)
T PRK15179 457 MRGVALSSNSQFAAHRYADW-LG--------VDERRIPVVYNGLAPLKSVQDDA-----------------CTA-MMAQF 509 (694)
T ss_pred cCCeEEEeCcHHHHHHHHHH-cC--------CChhHEEEECCCcCHHhcCCCch-----------------hhH-HHHhh
Confidence 3 45566666555555432 22 34678999999999887765310 111 11112
Q ss_pred --CCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhc--CCcEEEEEcCCCccc-ccH--------------------H
Q 004879 624 --GLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVPH-IQV--------------------Y 678 (725)
Q Consensus 624 --GL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~--~~iqLVIvG~Gp~~~-le~--------------------~ 678 (725)
+++ .+.++|+++||+.++||++.+++|+..+.+ .+++|+|+|+|+... +++ .
T Consensus 510 ~~~~~---~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~~~~~L~~l~~~lgL~~~V~flG~~~dv~ 586 (694)
T PRK15179 510 DARTS---DARFTVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMVGGGPLLESVREFAQRLGMGERILFTGLSRRVG 586 (694)
T ss_pred ccccC---CCCeEEEEEEeCCccCCHHHHHHHHHHHHHHCcCeEEEEEccCcchHHHHHHHHHcCCCCcEEEcCCcchHH
Confidence 222 246799999999999999999999998875 479999999998542 221 1
Q ss_pred HHHHhcCeEEEcCCcccchHHHHHHcCCCccc
Q 004879 679 PILLSSFSFLRKHIFNICNLYIKLGQGGDLTV 710 (725)
Q Consensus 679 ~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V 710 (725)
.+|++||+||+||.+|+||++++|||+++.||
T Consensus 587 ~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~PV 618 (694)
T PRK15179 587 YWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPV 618 (694)
T ss_pred HHHHhcCEEEeccccccchHHHHHHHHcCCeE
Confidence 89999999999999999999999999555553
No 42
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.89 E-value=1.5e-21 Score=204.29 Aligned_cols=276 Identities=19% Similarity=0.131 Sum_probs=173.6
Q ss_pred eEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeC
Q 004879 334 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 413 (725)
Q Consensus 334 kILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~ 413 (725)
||+++++.++|. ..||.+.++..|+++|+++||+|+|+++......... .. .
T Consensus 1 kIl~i~~~~~~~-~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~--~~-------------------------~ 52 (359)
T cd03823 1 RILVVNHLYPPR-SVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDK--EV-------------------------I 52 (359)
T ss_pred CeeEEcccCCcc-cccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCccc--cc-------------------------c
Confidence 699999988886 4799999999999999999999999997644321100 00 0
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcE
Q 004879 414 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 493 (725)
Q Consensus 414 GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipi 493 (725)
+........ .+. ...+...............+......+++ ..+||+||+|.+..... .++.... ..++|+
T Consensus 53 ~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~dii~~~~~~~~~~--~~~~~~~---~~~~~~ 123 (359)
T cd03823 53 GVVVYGRPI-DEV-LRSALPRDLFHLSDYDNPAVVAEFARLLE--DFRPDVVHFHHLQGLGV--SILRAAR---DRGIPI 123 (359)
T ss_pred cceeecccc-ccc-cCCCchhhhhHHHhccCHHHHHHHHHHHH--HcCCCEEEECCccchHH--HHHHHHH---hcCCCE
Confidence 000000000 000 00000000000000000012233334444 36899999998743322 2222111 146999
Q ss_pred EEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCccccc
Q 004879 494 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTL 573 (725)
Q Consensus 494 V~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l 573 (725)
|+++|+..... +... . .....|.++++|+.+.+.+.....
T Consensus 124 i~~~hd~~~~~--~~~~---------~---------------------~~~~~d~ii~~s~~~~~~~~~~~~-------- 163 (359)
T cd03823 124 VLTLHDYWLIC--PRQG---------L---------------------FKKGGDAVIAPSRFLLDRYVANGL-------- 163 (359)
T ss_pred EEEEeeeeeec--chhh---------h---------------------hccCCCEEEEeCHHHHHHHHHcCC--------
Confidence 99999864211 0000 0 001129999999988887765211
Q ss_pred ccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHH
Q 004879 574 NFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHA 653 (725)
Q Consensus 574 ~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA 653 (725)
...++.+||||+|...+.+... +.+ .+.++++|+||+.+.||++.+++|
T Consensus 164 --~~~~~~vi~n~~~~~~~~~~~~--------------------------~~~---~~~~~i~~~G~~~~~k~~~~li~~ 212 (359)
T cd03823 164 --FAEKISVIRNGIDLDRAKRPRR--------------------------APP---GGRLRFGFIGQLTPHKGVDLLLEA 212 (359)
T ss_pred --CccceEEecCCcChhhcccccc--------------------------CCC---CCceEEEEEecCccccCHHHHHHH
Confidence 2468999999999987755310 112 255789999999999999999999
Q ss_pred HHHhhcCCcEEEEEcCCCccccc------------------H--HHHHHhcCeEEEcCC-cccchHHHHHHcCCCcccc-
Q 004879 654 IYRTLELGGQFILLGSSPVPHIQ------------------V--YPILLSSFSFLRKHI-FNICNLYIKLGQGGDLTVN- 711 (725)
Q Consensus 654 ~~~L~~~~iqLVIvG~Gp~~~le------------------~--~~iyAaADIfVlPS~-~EpfGLv~LEAMg~~~~V~- 711 (725)
+..+.+.+++|+++|.|+..... . ..+|+.||++++||. .|+||++++|||+++.||+
T Consensus 213 ~~~l~~~~~~l~i~G~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~ 292 (359)
T cd03823 213 FKRLPRGDIELVIVGNGLELEEESYELEGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIA 292 (359)
T ss_pred HHHHHhcCcEEEEEcCchhhhHHHHhhcCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEE
Confidence 99987668999999998643210 1 189999999999998 7999999999998887754
Q ss_pred CCCCCc
Q 004879 712 NNCEPW 717 (725)
Q Consensus 712 ~~~~G~ 717 (725)
++.+|+
T Consensus 293 ~~~~~~ 298 (359)
T cd03823 293 SDIGGM 298 (359)
T ss_pred CCCCCH
Confidence 444443
No 43
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.89 E-value=4.2e-22 Score=216.02 Aligned_cols=261 Identities=12% Similarity=0.115 Sum_probs=164.3
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHC--CCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEee
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKK--GHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVS 410 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~--GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~ 410 (725)
|||+++++. .| ..||++.++..++++|.++ ||+|.+++|...... .. +.... ...
T Consensus 1 mkI~~~~~~-~~--~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~-~~---~~~~~---------------~~~- 57 (359)
T PRK09922 1 MKIAFIGEA-VS--GFGGMETVISNVINTFEESKINCEMFFFCRNDKMDK-AW---LKEIK---------------YAQ- 57 (359)
T ss_pred CeeEEeccc-cc--CCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCCh-HH---HHhcc---------------hhc-
Confidence 899999874 34 3699999999999999999 899999987654211 00 00000 000
Q ss_pred eeCCeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCC
Q 004879 411 TIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNS 490 (725)
Q Consensus 411 ~v~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ 490 (725)
...++.+. ++ ..+ .. ......+++ ..+|||||+|++.+.+++......+ ...
T Consensus 58 ~~~~~~~~---------~~------~~~---~~----~~~l~~~l~--~~~~Dii~~~~~~~~~~~~~~~~~~----~~~ 109 (359)
T PRK09922 58 SFSNIKLS---------FL------RRA---KH----VYNFSKWLK--ETQPDIVICIDVISCLYANKARKKS----GKQ 109 (359)
T ss_pred ccccchhh---------hh------ccc---HH----HHHHHHHHH--hcCCCEEEEcCHHHHHHHHHHHHHh----CCC
Confidence 00011110 00 000 00 122234454 3689999999865544432222221 123
Q ss_pred CcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcc
Q 004879 491 ARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLH 570 (725)
Q Consensus 491 ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~ 570 (725)
.+++.+.|... +.. . .. ....+..+|.++++|+..++.+... |
T Consensus 110 ~~~~~~~h~~~-----~~~----------~-----------~~-----~~~~~~~~d~~i~~S~~~~~~~~~~----~-- 152 (359)
T PRK09922 110 FKIFSWPHFSL-----DHK----------K-----------HA-----ECKKITCADYHLAISSGIKEQMMAR----G-- 152 (359)
T ss_pred CeEEEEecCcc-----ccc----------c-----------hh-----hhhhhhcCCEEEEcCHHHHHHHHHc----C--
Confidence 56777777531 000 0 00 0011357899999999988887641 2
Q ss_pred cccccCCCcEEEEeCCccCCCCC-CCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCc--CCCCH
Q 004879 571 STLNFHSKKFVGILNGIDTDAWN-PATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLV--PQKGV 647 (725)
Q Consensus 571 ~~l~~~~~Kv~vIpNGID~~~f~-P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~--~qKGv 647 (725)
.+..++.+||||+|.+.+. |.. . ..+.++++|+||+. ++||+
T Consensus 153 ----~~~~ki~vi~N~id~~~~~~~~~------------------------------~-~~~~~~i~~~Grl~~~~~k~~ 197 (359)
T PRK09922 153 ----ISAQRISVIYNPVEIKTIIIPPP------------------------------E-RDKPAVFLYVGRLKFEGQKNV 197 (359)
T ss_pred ----CCHHHEEEEcCCCCHHHccCCCc------------------------------c-cCCCcEEEEEEEEecccCcCH
Confidence 2356899999999965442 210 0 11357899999997 46999
Q ss_pred HHHHHHHHHhhcCCcEEEEEcCCCccc-ccH------------------------HHHHHhcCeEEEcCCcccchHHHHH
Q 004879 648 HLIRHAIYRTLELGGQFILLGSSPVPH-IQV------------------------YPILLSSFSFLRKHIFNICNLYIKL 702 (725)
Q Consensus 648 dlLieA~~~L~~~~iqLVIvG~Gp~~~-le~------------------------~~iyAaADIfVlPS~~EpfGLv~LE 702 (725)
+.+++|+..+. .+++|+|+|+|+... +++ ..+|+.||++|+||.+|+||++++|
T Consensus 198 ~~l~~a~~~~~-~~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lE 276 (359)
T PRK09922 198 KELFDGLSQTT-GEWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLE 276 (359)
T ss_pred HHHHHHHHhhC-CCeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHH
Confidence 99999998875 479999999998532 111 0578889999999999999999999
Q ss_pred HcCCCcccc-CC-CCCc
Q 004879 703 GQGGDLTVN-NN-CEPW 717 (725)
Q Consensus 703 AMg~~~~V~-~~-~~G~ 717 (725)
||+++.||+ .+ .+|.
T Consensus 277 Ama~G~Pvv~s~~~~g~ 293 (359)
T PRK09922 277 AMSYGIPCISSDCMSGP 293 (359)
T ss_pred HHHcCCCEEEeCCCCCh
Confidence 997776654 34 3444
No 44
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.89 E-value=1e-21 Score=208.45 Aligned_cols=268 Identities=19% Similarity=0.164 Sum_probs=174.2
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeee
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 412 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v 412 (725)
|||+|++.. + ..||.+.++..++++|.++||+|+|+++....
T Consensus 1 MkIl~~~~~--~--~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~---------------------------------- 42 (365)
T cd03825 1 MKVLHLNTS--D--ISGGAARAAYRLHRALQAAGVDSTMLVQEKKA---------------------------------- 42 (365)
T ss_pred CeEEEEecC--C--CCCcHHHHHHHHHHHHHhcCCceeEEEeecch----------------------------------
Confidence 899999763 3 36999999999999999999999999754210
Q ss_pred CCeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCc
Q 004879 413 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSAR 492 (725)
Q Consensus 413 ~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ip 492 (725)
+ . ..++ ..+|||||+|.+..+.+....+..+. .++|
T Consensus 43 -------~--------~-----------------------~~~~--~~~~diih~~~~~~~~~~~~~~~~~~----~~~~ 78 (365)
T cd03825 43 -------L--------I-----------------------SKIE--IINADIVHLHWIHGGFLSIEDLSKLL----DRKP 78 (365)
T ss_pred -------h--------h-----------------------hChh--cccCCEEEEEccccCccCHHHHHHHH----cCCC
Confidence 0 0 0001 24899999998776655333333321 3799
Q ss_pred EEEEeeCCcccC---CCChhh---hhhcCCcccccCCcc-cccccccccchhhhhhhh-hhccEEEEeCHHHHHHHHhhc
Q 004879 493 VCFTCHNFEYQG---TAPAKE---LASCGLDVQQLNRPD-RMQDNSAHDRINPLKGAI-VFSNIVTTVSPSYAQEVRTSE 564 (725)
Q Consensus 493 iV~TiHn~~~qg---~~p~~~---l~~~Gl~~~~l~~~~-~l~d~~~~~~in~~k~ai-~~AD~VitVS~~~a~ev~~~~ 564 (725)
+|+|+|++.... ..+... ...|+..+.....+. .+ ........+..+ ..++.++++|+..++.+...
T Consensus 79 ~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~~~- 153 (365)
T cd03825 79 VVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQLGSYPEKDL----SRWIWRRKRKAWADLNLTIVAPSRWLADCARSS- 153 (365)
T ss_pred EEEEcccCcccccccCCccccccccccCCCCCCCCCCCcccH----HHHHHHHHHHHhccCCcEEEehhHHHHHHHHhc-
Confidence 999999874211 111000 001111000000000 00 000011111122 35678899998777766542
Q ss_pred cCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcC-
Q 004879 565 GGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVP- 643 (725)
Q Consensus 565 ~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~- 643 (725)
+ ..+..++.+||||+|...|.|. ++...++.+++++ +.+++++.|+...
T Consensus 154 ~--------~~~~~~~~vi~ngi~~~~~~~~-------------------~~~~~~~~~~~~~---~~~~i~~~~~~~~~ 203 (365)
T cd03825 154 S--------LFKGIPIEVIPNGIDTTIFRPR-------------------DKREARKRLGLPA---DKKIILFGAVGGTD 203 (365)
T ss_pred c--------ccCCCceEEeCCCCcccccCCC-------------------cHHHHHHHhCCCC---CCeEEEEEecCCCc
Confidence 1 1235789999999999888764 2345677888873 5567777777765
Q ss_pred -CCCHHHHHHHHHHhhc---CCcEEEEEcCCCcccc-------------c-H---HHHHHhcCeEEEcCCcccchHHHHH
Q 004879 644 -QKGVHLIRHAIYRTLE---LGGQFILLGSSPVPHI-------------Q-V---YPILLSSFSFLRKHIFNICNLYIKL 702 (725)
Q Consensus 644 -qKGvdlLieA~~~L~~---~~iqLVIvG~Gp~~~l-------------e-~---~~iyAaADIfVlPS~~EpfGLv~LE 702 (725)
.||++.+++|+..+.+ .+++++++|.++.... . . ..+|+.||++++||.+|+||++++|
T Consensus 204 ~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~~e~~g~~~~E 283 (365)
T cd03825 204 PRKGFDELIEALKRLAERWKDDIELVVFGASDPEIPPDLPFPVHYLGSLNDDESLALIYSAADVFVVPSLQENFPNTAIE 283 (365)
T ss_pred cccCHHHHHHHHHHhhhccCCCeEEEEeCCCchhhhccCCCceEecCCcCCHHHHHHHHHhCCEEEeccccccccHHHHH
Confidence 8999999999998875 5789999999764311 1 1 1789999999999999999999999
Q ss_pred HcCCCcccc-CCCCCc
Q 004879 703 GQGGDLTVN-NNCEPW 717 (725)
Q Consensus 703 AMg~~~~V~-~~~~G~ 717 (725)
||+++.||+ .+.+|.
T Consensus 284 am~~g~PvI~~~~~~~ 299 (365)
T cd03825 284 ALACGTPVVAFDVGGI 299 (365)
T ss_pred HHhcCCCEEEecCCCC
Confidence 997776654 444443
No 45
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=99.89 E-value=5.7e-22 Score=219.99 Aligned_cols=185 Identities=16% Similarity=0.190 Sum_probs=131.0
Q ss_pred CCCceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhh
Q 004879 459 GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINP 538 (725)
Q Consensus 459 ~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~ 538 (725)
..+||+||+|.++++.++..+... +..+.|+++|+|+.+.... .... .+ ...
T Consensus 116 ~~~~diihaH~~~~~~~~~~~~~~----~~~~~~~~~t~Hg~d~~~~---~~~~-------------------~~--~~~ 167 (406)
T PRK15427 116 PFVADVFIAHFGPAGVTAAKLREL----GVLRGKIATIFHGIDISSR---EVLN-------------------HY--TPE 167 (406)
T ss_pred cCCCCEEEEcCChHHHHHHHHHHh----CCCCCCeEEEEcccccccc---hhhh-------------------hh--hHH
Confidence 468999999998776553333221 1234577899998752100 0000 00 012
Q ss_pred hhhhhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHH
Q 004879 539 LKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKES 618 (725)
Q Consensus 539 ~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~a 618 (725)
.+..+..+|.|+++|+..++.+.. .| .+..|+.+||||||.+.|.|....
T Consensus 168 ~~~~~~~ad~vv~~S~~~~~~l~~--~g--------~~~~ki~vi~nGvd~~~f~~~~~~-------------------- 217 (406)
T PRK15427 168 YQQLFRRGDLMLPISDLWAGRLQK--MG--------CPPEKIAVSRMGVDMTRFSPRPVK-------------------- 217 (406)
T ss_pred HHHHHHhCCEEEECCHHHHHHHHH--cC--------CCHHHEEEcCCCCCHHHcCCCccc--------------------
Confidence 345678899999999988877754 12 245789999999999888653100
Q ss_pred HHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhc--CCcEEEEEcCCCccc-ccH------------------
Q 004879 619 IRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVPH-IQV------------------ 677 (725)
Q Consensus 619 LRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~--~~iqLVIvG~Gp~~~-le~------------------ 677 (725)
. ..+...|+|+||+.++||++.+++|+..+.+ .+++|+|+|+|+... +++
T Consensus 218 -------~--~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~ 288 (406)
T PRK15427 218 -------A--PATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKP 288 (406)
T ss_pred -------c--CCCCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECchhHHHHHHHHHHcCCCCeEEEeCCCC
Confidence 0 0133579999999999999999999998875 378999999998542 111
Q ss_pred ----HHHHHhcCeEEEcCCc------ccchHHHHHHcCCCccc
Q 004879 678 ----YPILLSSFSFLRKHIF------NICNLYIKLGQGGDLTV 710 (725)
Q Consensus 678 ----~~iyAaADIfVlPS~~------EpfGLv~LEAMg~~~~V 710 (725)
..+|+.||+||+||.. |+||++++|||+++.||
T Consensus 289 ~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PV 331 (406)
T PRK15427 289 SHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPV 331 (406)
T ss_pred HHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCE
Confidence 1899999999999984 99999999999666554
No 46
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.89 E-value=3.4e-21 Score=201.84 Aligned_cols=298 Identities=16% Similarity=0.138 Sum_probs=187.0
Q ss_pred eEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeC
Q 004879 334 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 413 (725)
Q Consensus 334 kILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~ 413 (725)
||++|+..++|. .||.+.++..++++|++.||+|+++++........... . .......
T Consensus 1 kIl~i~~~~~~~--~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~-------------~-------~~~~~~~ 58 (394)
T cd03794 1 KILILSQYFPPE--LGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYK-------------G-------YKREEVD 58 (394)
T ss_pred CEEEEecccCCc--cCCcceeHHHHHHHHHhCCceEEEEecCCCcccccccc-------------c-------ceEEecC
Confidence 699999988875 49999999999999999999999999774432110000 0 0011235
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCch-hhHHHHHHHhhccCCCCCCc
Q 004879 414 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQT-AFVAPLYWDLYVPKGLNSAR 492 (725)
Q Consensus 414 GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~s-a~vapl~~~~ya~~gl~~ip 492 (725)
|+.++.+.... +.....++ ....+..|.......+.....+||+||+|.+.. .......... ..++|
T Consensus 59 ~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~-----~~~~~ 126 (394)
T cd03794 59 GVRVHRVPLPP----YKKNGLLK---RLLNYLSFALSALLALLKRRRRPDVIIATSPPLLIALAALLLAR-----LKGAP 126 (394)
T ss_pred CeEEEEEecCC----CCccchHH---HHHhhhHHHHHHHHHHHhcccCCCEEEEcCChHHHHHHHHHHHH-----hcCCC
Confidence 66666554211 11111110 111222233333333331256899999998432 2221122121 24799
Q ss_pred EEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccc
Q 004879 493 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHST 572 (725)
Q Consensus 493 iV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~ 572 (725)
+|+++|+..... ... .+..... ... ......+.+..+..+|.++++|+.+++.+.. .+
T Consensus 127 ~i~~~h~~~~~~-----~~~-~~~~~~~-----~~~---~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~--~~------ 184 (394)
T cd03794 127 FVLEVRDLWPES-----AVA-LGLLKNG-----SLL---YRLLRKLERLIYRRADAIVVISPGMREYLVR--RG------ 184 (394)
T ss_pred EEEEehhhcchh-----HHH-ccCcccc-----chH---HHHHHHHHHHHHhcCCEEEEECHHHHHHHHh--cC------
Confidence 999999863211 000 0000000 000 0111234567788999999999999887762 11
Q ss_pred cccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHH
Q 004879 573 LNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRH 652 (725)
Q Consensus 573 l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLie 652 (725)
....++.+||||+|...+.+.... .. ++..+.. .+.++++|+||+.++||++.+++
T Consensus 185 --~~~~~~~~i~~~~~~~~~~~~~~~------------------~~-~~~~~~~---~~~~~i~~~G~~~~~k~~~~l~~ 240 (394)
T cd03794 185 --VPPEKISVIPNGVDLELFKPPPAD------------------ES-LRKELGL---DDKFVVLYAGNIGRAQGLDTLLE 240 (394)
T ss_pred --CCcCceEEcCCCCCHHHcCCccch------------------hh-hhhccCC---CCcEEEEEecCcccccCHHHHHH
Confidence 245789999999998877664210 01 2333333 35678999999999999999999
Q ss_pred HHHHhhcC-CcEEEEEcCCCccc-ccH---------------------HHHHHhcCeEEEcCCcccc-----hHHHHHHc
Q 004879 653 AIYRTLEL-GGQFILLGSSPVPH-IQV---------------------YPILLSSFSFLRKHIFNIC-----NLYIKLGQ 704 (725)
Q Consensus 653 A~~~L~~~-~iqLVIvG~Gp~~~-le~---------------------~~iyAaADIfVlPS~~Epf-----GLv~LEAM 704 (725)
|+..+.+. +++|+++|.|+... ++. ..+|+.||++++||..|++ |++++|||
T Consensus 241 ~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~ 320 (394)
T cd03794 241 AAALLKDRPDIRFLIVGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYM 320 (394)
T ss_pred HHHHHhhcCCeEEEEeCCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCeeEEeccCcccccccCchHHHHHH
Confidence 99998765 89999999987531 111 1799999999999999876 77899999
Q ss_pred CCCcccc
Q 004879 705 GGDLTVN 711 (725)
Q Consensus 705 g~~~~V~ 711 (725)
+++.||+
T Consensus 321 ~~G~pvi 327 (394)
T cd03794 321 AAGKPVL 327 (394)
T ss_pred HCCCcEE
Confidence 7777754
No 47
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.88 E-value=5.1e-21 Score=201.04 Aligned_cols=276 Identities=19% Similarity=0.174 Sum_probs=176.7
Q ss_pred eEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeC
Q 004879 334 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 413 (725)
Q Consensus 334 kILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~ 413 (725)
||++|+..|+|. .||.+.++..|+++|.++||+|+++++........ . . .
T Consensus 1 kIl~i~~~~~p~--~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~----~-----------~-------------~ 50 (364)
T cd03814 1 RIAIVTDTFLPQ--VNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEG----P-----------A-------------R 50 (364)
T ss_pred CeEEEecccCcc--ccceehHHHHHHHHHHHCCCEEEEEeCCchhhccC----C-----------C-------------C
Confidence 699999988885 69999999999999999999999999774321110 0 0 0
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcE
Q 004879 414 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 493 (725)
Q Consensus 414 GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipi 493 (725)
.+.+..+... .+. .+.. .+... ......++ ..+||+||+|.+.........+.. ..++|+
T Consensus 51 ~~~~~~~~~~----~~~---~~~~--~~~~~----~~~~~~~~--~~~pdii~~~~~~~~~~~~~~~~~-----~~~~~~ 110 (364)
T cd03814 51 VVPVPSVPLP----GYP---EIRL--ALPPR----RRVRRLLD--AFAPDVVHIATPGPLGLAALRAAR-----RLGIPV 110 (364)
T ss_pred ceeecccccC----ccc---ceEe--cccch----hhHHHHHH--hcCCCEEEEeccchhhHHHHHHHH-----HcCCCE
Confidence 0001000000 000 0000 00000 11122232 368999999975432211222221 257999
Q ss_pred EEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCccccc
Q 004879 494 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTL 573 (725)
Q Consensus 494 V~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l 573 (725)
++++|+.... . ....... . . ......+.+..+..+|.++++|+.+.+.... .
T Consensus 111 i~~~~~~~~~-~-----~~~~~~~--~------~----~~~~~~~~~~~~~~~d~i~~~s~~~~~~~~~--~-------- 162 (364)
T cd03814 111 VTSYHTDFPE-Y-----LRYYGLG--P------L----SWLAWAYLRWFHNRADRVLVPSPSLADELRA--R-------- 162 (364)
T ss_pred EEEEecChHH-H-----hhhcccc--h------H----hHhhHHHHHHHHHhCCEEEeCCHHHHHHHhc--c--------
Confidence 9999975210 0 0000000 0 0 0000224466678899999999988774432 1
Q ss_pred ccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHH
Q 004879 574 NFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHA 653 (725)
Q Consensus 574 ~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA 653 (725)
...++.+++||+|...|.|... +...++.++ . ++.++++|+||+.+.||++.+++|
T Consensus 163 --~~~~~~~~~~g~~~~~~~~~~~------------------~~~~~~~~~-~---~~~~~i~~~G~~~~~k~~~~~i~~ 218 (364)
T cd03814 163 --GFRRVRLWPRGVDTELFHPRRR------------------DEALRARLG-P---PDRPVLLYVGRLAPEKNLEALLDA 218 (364)
T ss_pred --CCCceeecCCCccccccCcccc------------------cHHHHHHhC-C---CCCeEEEEEeccccccCHHHHHHH
Confidence 1357889999999988876421 122344555 2 256789999999999999999999
Q ss_pred HHHhhc-CCcEEEEEcCCCccc-cc-------------H---HHHHHhcCeEEEcCCcccchHHHHHHcCCCcccc
Q 004879 654 IYRTLE-LGGQFILLGSSPVPH-IQ-------------V---YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVN 711 (725)
Q Consensus 654 ~~~L~~-~~iqLVIvG~Gp~~~-le-------------~---~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V~ 711 (725)
+..+.+ .+++|+++|.|+... ++ . ..+|+.||++++||.+|+||++++|||+++.||+
T Consensus 219 ~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI 294 (364)
T cd03814 219 DLPLRRRPPVRLVIVGDGPARARLEARYPNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMASGLPVV 294 (364)
T ss_pred HHHhhhcCCceEEEEeCCchHHHHhccCCcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcHHHHHHHcCCCEE
Confidence 999875 379999999987542 11 1 1899999999999999999999999998887765
No 48
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.88 E-value=6.3e-21 Score=218.70 Aligned_cols=415 Identities=15% Similarity=0.138 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhhhHHhhhhhccCCCCCCCChHHHHHHHH----HHhhhhhc
Q 004879 205 ELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLL----IIDGWLLE 280 (725)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll----~~d~~~~~ 280 (725)
..+|.+++.+|.|=+.+ ||..=++- .+.++.|+.+|..+-.|.+.. .+.|-=++| |+.-.+.. .+|.+
T Consensus 175 r~~~~~~~e~e~~~~~~--~~~~~~~~-~~~~~k~k~~~k~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~--- 246 (794)
T PLN02501 175 RALKTRFRELEKRSESL--EIFGGFKN-SEFVEKLKSSLKAIYKEPQES-KDVPPLDVP-ELLAYLVRQSEPFLDQL--- 246 (794)
T ss_pred HHHHHHHHHHHhhcchH--HHhcccch-HHHHHHHHHHHHhhhcCcccc-ccCCCcchH-HHHHHHHhhccchhhhh---
Confidence 36788999999865444 66555544 455777888887777666654 233333332 33322221 12333
Q ss_pred ccCChHHHHHHHHHHHhhcCCchhhhhhhh---------hhchhhHH---HHhh---------hc-cCCC----CCCCCe
Q 004879 281 KKLSTSEAKLLREMVWKRNGRIRDAYMECK---------EKNEHEAI---STFL---------KL-TSSS----ISSGLH 334 (725)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~---~~~~---------~~-~~~~----~~~~Mk 334 (725)
-|-.+-...+++++..+..+. -.|-... .+...|+= +..+ +| +.+. ..+.-+
T Consensus 247 -~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 324 (794)
T PLN02501 247 -GVRKDICDKIVESLCSKRKNQ-LLLRSLSAGESSLLESDNHNDELDLRIASVLQSTGHCYDGGFWTDSSKHELSDGKRH 324 (794)
T ss_pred -hhhHHHHHHHHHHHHhhcccc-ccccccccccccccccccccccchhhhhhhhhccCccccCCcccCccccccccCCCe
Confidence 122222345555554322111 1111110 11111100 0000 11 1111 133469
Q ss_pred EEEEcCccCCCCCCCcHHHHHHHHHHH--HHHC-CCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEee-
Q 004879 335 VIHIAAEMAPVAKVGGLGDVVAGLGKA--LQKK-GHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVS- 410 (725)
Q Consensus 335 ILhIs~E~~P~~kvGGlg~vV~~Lara--L~~~-GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~- 410 (725)
|.++|+-..|+- + | +.|.-|-|| |++. |+.|+.+.|+....++..+ -+-++.+.+.-+...| .+-|-.
T Consensus 325 ~~ivTtAslPWm-T-G--tavnpL~rAayLa~~~~~~VtlviPWl~~~dq~~v---y~~~~~F~~p~eQe~~-ir~wl~~ 396 (794)
T PLN02501 325 VAIVTTASLPWM-T-G--TAVNPLFRAAYLAKSAKQNVTLLVPWLCKSDQELV---YPNNLTFSSPEEQESY-IRNWLEE 396 (794)
T ss_pred EEEEEcccCccc-c-c--ccccHHHHHHHhcccCCceEEEEEecCCccccccc---cCCCcccCCHHHHHHH-HHHHHHH
Confidence 999999999992 3 3 445555444 6776 6999999999764322111 0000111110000000 111211
Q ss_pred ---eeCCeeEEEeCCCCCCccccc--CCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCch-hhH-HHHHHHhh
Q 004879 411 ---TIEGLPVYFIEPHHPDKFFWR--GQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQT-AFV-APLYWDLY 483 (725)
Q Consensus 411 ---~v~GI~V~~I~~~~ps~~F~r--~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~s-a~v-apl~~~~y 483 (725)
...++.+.|.+. .|.. +.+++ .-.+.+.+. .++|||||++.+.. +.. ....|..
T Consensus 397 r~g~~~~~~i~fYpg-----~~~~~~~SI~p-----------~gdI~~~L~--~f~PDVVHLatP~~LGw~~~Glr~Ar- 457 (794)
T PLN02501 397 RIGFKADFKISFYPG-----KFSKERRSIIP-----------AGDTSQFIP--SKDADIAILEEPEHLNWYHHGKRWTD- 457 (794)
T ss_pred hcCCCCCceEEeecc-----hhccCCccccc-----------hHHHHHHhh--ccCCCEEEECCchhhccHHHHHHHHH-
Confidence 112233332221 1111 01111 111223333 47999999998654 222 0222322
Q ss_pred ccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhh
Q 004879 484 VPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTS 563 (725)
Q Consensus 484 a~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~ 563 (725)
..+ |+|.++|+-. ..+... .+. ..++........++++.+. ||.|+++|..+. .+.
T Consensus 458 ----Kl~-PVVasyHTny-~eYl~~-----y~~--------g~L~~~llk~l~~~v~r~h--cD~VIaPS~atq-~L~-- 513 (794)
T PLN02501 458 ----KFN-HVVGVVHTNY-LEYIKR-----EKN--------GALQAFFVKHINNWVTRAY--CHKVLRLSAATQ-DLP-- 513 (794)
T ss_pred ----HcC-CeEEEEeCCc-HHHHhH-----hcc--------hhHHHHHHHHHHHHHHHhh--CCEEEcCCHHHH-Hhc--
Confidence 135 8999999652 111110 000 0000000000012223322 899999996554 321
Q ss_pred ccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcC
Q 004879 564 EGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVP 643 (725)
Q Consensus 564 ~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~ 643 (725)
. ......||||++.|.|.. +...++.+|++. ..+.++|+||+.+
T Consensus 514 -------------~-~vI~nVnGVDte~F~P~~-------------------r~~~~r~lgi~~---~~kgiLfVGRLa~ 557 (794)
T PLN02501 514 -------------K-SVICNVHGVNPKFLKIGE-------------------KVAEERELGQQA---FSKGAYFLGKMVW 557 (794)
T ss_pred -------------c-cceeecccccccccCCcc-------------------hhHHHHhcCCcc---ccCceEEEEcccc
Confidence 1 122223799999998852 112225667652 2356899999999
Q ss_pred CCCHHHHHHHHHHhhc--CCcEEEEEcCCCccc-ccH------------------HHHHHhcCeEEEcCCcccchHHHHH
Q 004879 644 QKGVHLIRHAIYRTLE--LGGQFILLGSSPVPH-IQV------------------YPILLSSFSFLRKHIFNICNLYIKL 702 (725)
Q Consensus 644 qKGvdlLieA~~~L~~--~~iqLVIvG~Gp~~~-le~------------------~~iyAaADIfVlPS~~EpfGLv~LE 702 (725)
+||++.|++|+..+.. .+++|+|+|+||... +++ ..+|+++|+||+||.+|+||+|++|
T Consensus 558 EKGld~LLeAla~L~~~~pnvrLvIVGDGP~reeLe~la~eLgL~V~FLG~~dd~~~lyasaDVFVlPS~sEgFGlVlLE 637 (794)
T PLN02501 558 AKGYRELIDLLAKHKNELDGFNLDVFGNGEDAHEVQRAAKRLDLNLNFLKGRDHADDSLHGYKVFINPSISDVLCTATAE 637 (794)
T ss_pred cCCHHHHHHHHHHHHhhCCCeEEEEEcCCccHHHHHHHHHHcCCEEEecCCCCCHHHHHHhCCEEEECCCcccchHHHHH
Confidence 9999999999998764 379999999999752 221 1699999999999999999999999
Q ss_pred HcCCCcccc-CCCCC
Q 004879 703 GQGGDLTVN-NNCEP 716 (725)
Q Consensus 703 AMg~~~~V~-~~~~G 716 (725)
||+++.||+ .+++|
T Consensus 638 AMA~GlPVVATd~pG 652 (794)
T PLN02501 638 ALAMGKFVVCADHPS 652 (794)
T ss_pred HHHcCCCEEEecCCC
Confidence 998888764 55554
No 49
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.88 E-value=2.7e-21 Score=203.61 Aligned_cols=281 Identities=16% Similarity=0.112 Sum_probs=182.3
Q ss_pred eEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeC
Q 004879 334 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 413 (725)
Q Consensus 334 kILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~ 413 (725)
||++++..+.|. ..||+++++.+|+++|++.||.|+++++.......... .. .
T Consensus 1 ~ili~~~~~~~~-~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~---------------~~-----------~ 53 (365)
T cd03809 1 RILIDARFLASR-RPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLP---------------LR-----------A 53 (365)
T ss_pred CEEEechhhhcC-CCCcHHHHHHHHHHHHHhcCCceEEEEecCcccccccc---------------ch-----------h
Confidence 688888887773 47999999999999999999999999988654321100 00 0
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcE
Q 004879 414 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 493 (725)
Q Consensus 414 GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipi 493 (725)
.... .. . ..... .. .++..+.......+. ..+|||||+|++..... . ..++|+
T Consensus 54 ~~~~--~~--~---~~~~~-~~------~~~~~~~~~~~~~~~--~~~~Dii~~~~~~~~~~-----~------~~~~~~ 106 (365)
T cd03809 54 ALRL--LL--R---LPRRL-LW------GLLFLLRAGDRLLLL--LLGLDLLHSPHNTAPLL-----R------LRGVPV 106 (365)
T ss_pred cccc--cc--c---ccccc-cc------chhhHHHHHHHHHhh--hcCCCeeeecccccCcc-----c------CCCCCE
Confidence 0000 00 0 00000 00 000001111111222 26899999998764432 1 258999
Q ss_pred EEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCccccc
Q 004879 494 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTL 573 (725)
Q Consensus 494 V~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l 573 (725)
|+++|++.+... +. .. .... ......+.+..+.++|.++++|+.+++.+... ++
T Consensus 107 i~~~hd~~~~~~-~~-~~-----~~~~-----------~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~~-~~------- 160 (365)
T cd03809 107 VVTIHDLIPLRF-PE-YF-----SPGF-----------RRYFRRLLRRALRRADAIITVSEATKRDLLRY-LG------- 160 (365)
T ss_pred EEEeccchhhhC-cc-cC-----CHHH-----------HHHHHHHHHHHHHHcCEEEEccHHHHHHHHHH-hC-------
Confidence 999998742110 00 00 0000 01112345777889999999999998887652 21
Q ss_pred ccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHH
Q 004879 574 NFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHA 653 (725)
Q Consensus 574 ~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA 653 (725)
.+..++.++|||+|...+.+..+ .. +...+.. .+.+.++|+||+.+.||++.+++|
T Consensus 161 -~~~~~~~vi~~~~~~~~~~~~~~-------------------~~-~~~~~~~---~~~~~i~~~G~~~~~K~~~~~l~~ 216 (365)
T cd03809 161 -VPPDKIVVIPLGVDPRFRPPPAE-------------------AE-VLRALYL---LPRPYFLYVGTIEPRKNLERLLEA 216 (365)
T ss_pred -cCHHHEEeeccccCccccCCCch-------------------HH-HHHHhcC---CCCCeEEEeCCCccccCHHHHHHH
Confidence 23568999999999987765421 11 2233333 256899999999999999999999
Q ss_pred HHHhhcC--CcEEEEEcCCCccc--c-c---H------------------HHHHHhcCeEEEcCCcccchHHHHHHcCCC
Q 004879 654 IYRTLEL--GGQFILLGSSPVPH--I-Q---V------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGD 707 (725)
Q Consensus 654 ~~~L~~~--~iqLVIvG~Gp~~~--l-e---~------------------~~iyAaADIfVlPS~~EpfGLv~LEAMg~~ 707 (725)
+..+.+. +++|+++|.++... . + . ..+|+.||++++||.+|+||++++|||+++
T Consensus 217 ~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G 296 (365)
T cd03809 217 FARLPAKGPDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACG 296 (365)
T ss_pred HHHHHHhcCCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCC
Confidence 9998865 48999999865331 0 0 0 189999999999999999999999999888
Q ss_pred cccc-CCCCCce
Q 004879 708 LTVN-NNCEPWL 718 (725)
Q Consensus 708 ~~V~-~~~~G~l 718 (725)
.||+ ++.+|+-
T Consensus 297 ~pvI~~~~~~~~ 308 (365)
T cd03809 297 TPVIASNISSLP 308 (365)
T ss_pred CcEEecCCCCcc
Confidence 7765 4444443
No 50
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.87 E-value=2.1e-20 Score=196.89 Aligned_cols=264 Identities=16% Similarity=0.096 Sum_probs=168.3
Q ss_pred eEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeC
Q 004879 334 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 413 (725)
Q Consensus 334 kILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~ 413 (725)
||++|++ ++|. .||+++++..|+++|.+.||+|.|++.......... ... ..
T Consensus 1 kI~~v~~-~~~~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~---------------~~~----------~~ 52 (366)
T cd03822 1 RIALVSP-YPPR--KCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLY---------------GGE----------QE 52 (366)
T ss_pred CeEEecC-CCCC--CCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccC---------------CCc----------cc
Confidence 6899986 5564 799999999999999999999999986543211000 000 00
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhcc-CCCCCCc
Q 004879 414 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVP-KGLNSAR 492 (725)
Q Consensus 414 GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~-~gl~~ip 492 (725)
+... +. .+ +...+ ....+.++ ..+||+||+|.|.+.+. +..+..... ....++|
T Consensus 53 ~~~~--~~------------~~----~~~~~----~~~~~~~~--~~~~dii~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 107 (366)
T cd03822 53 VVRV--IV------------LD----NPLDY----RRAARAIR--LSGPDVVVIQHEYGIFG-GEAGLYLLLLLRGLGIP 107 (366)
T ss_pred ceee--ee------------cC----CchhH----HHHHHHHh--hcCCCEEEEeecccccc-chhhHHHHHHHhhcCCC
Confidence 0000 00 00 00000 12223344 35899999998654332 221111000 0125899
Q ss_pred EEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccc
Q 004879 493 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHST 572 (725)
Q Consensus 493 iV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~ 572 (725)
+|+++|+.... .+. .....+.+..+..+|.++++|....+++....
T Consensus 108 ~i~~~h~~~~~--~~~------------------------~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~-------- 153 (366)
T cd03822 108 VVVTLHTVLLH--EPR------------------------PGDRALLRLLLRRADAVIVMSSELLRALLLRA-------- 153 (366)
T ss_pred EEEEEecCCcc--ccc------------------------hhhhHHHHHHHhcCCEEEEeeHHHHHHHHhhc--------
Confidence 99999986110 000 00012345667889999999844444433211
Q ss_pred cccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHH
Q 004879 573 LNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRH 652 (725)
Q Consensus 573 l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLie 652 (725)
...++.+||||+|...+.+.. . . +..+.+ .+.+.++|+||+.+.||++.+++
T Consensus 154 ---~~~~~~~i~~~~~~~~~~~~~-------------------~--~-~~~~~~---~~~~~i~~~G~~~~~K~~~~ll~ 205 (366)
T cd03822 154 ---YPEKIAVIPHGVPDPPAEPPE-------------------S--L-KALGGL---DGRPVLLTFGLLRPYKGLELLLE 205 (366)
T ss_pred ---CCCcEEEeCCCCcCcccCCch-------------------h--h-HhhcCC---CCCeEEEEEeeccCCCCHHHHHH
Confidence 136899999999987554421 0 1 222222 35689999999999999999999
Q ss_pred HHHHhhc--CCcEEEEEcCCCccc--c--------c----------------H---HHHHHhcCeEEEcCCcc--cchHH
Q 004879 653 AIYRTLE--LGGQFILLGSSPVPH--I--------Q----------------V---YPILLSSFSFLRKHIFN--ICNLY 699 (725)
Q Consensus 653 A~~~L~~--~~iqLVIvG~Gp~~~--l--------e----------------~---~~iyAaADIfVlPS~~E--pfGLv 699 (725)
|+..+.+ .+++|+++|.|+... . + . ..+|+.||++++||.+| +||++
T Consensus 206 a~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~ 285 (366)
T cd03822 206 ALPLLVAKHPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGV 285 (366)
T ss_pred HHHHHHhhCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEecccccccccchH
Confidence 9999876 379999999875321 0 0 0 18999999999999999 99999
Q ss_pred HHHHcCCCccccC
Q 004879 700 IKLGQGGDLTVNN 712 (725)
Q Consensus 700 ~LEAMg~~~~V~~ 712 (725)
++|||+++.||+.
T Consensus 286 ~~Ea~a~G~PvI~ 298 (366)
T cd03822 286 LAYAIGFGKPVIS 298 (366)
T ss_pred HHHHHHcCCCEEe
Confidence 9999988777653
No 51
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.87 E-value=4.5e-20 Score=190.62 Aligned_cols=278 Identities=23% Similarity=0.371 Sum_probs=182.5
Q ss_pred eEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeC
Q 004879 334 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 413 (725)
Q Consensus 334 kILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~ 413 (725)
||+++++.++|. .||.+.++..|+++|.+.||+|.++++......... . ..
T Consensus 1 kI~ii~~~~~~~--~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~-----~----------------------~~ 51 (374)
T cd03801 1 KILLVTPEYPPS--VGGAERHVLELARALAARGHEVTVLTPGDGGLPDEE-----E----------------------VG 51 (374)
T ss_pred CeeEEecccCCc--cCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCcee-----e----------------------ec
Confidence 699999988775 799999999999999999999999998755432110 0 00
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcE
Q 004879 414 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 493 (725)
Q Consensus 414 GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipi 493 (725)
......... .. ..+. . .....+......+++ ..+||+||+|++....... .... ..++|+
T Consensus 52 ~~~~~~~~~------~~--~~~~---~-~~~~~~~~~~~~~~~--~~~~Dii~~~~~~~~~~~~-~~~~-----~~~~~~ 111 (374)
T cd03801 52 GIVVVRPPP------LL--RVRR---L-LLLLLLALRLRRLLR--RERFDVVHAHDWLALLAAA-LAAR-----LLGIPL 111 (374)
T ss_pred CcceecCCc------cc--ccch---h-HHHHHHHHHHHHHhh--hcCCcEEEEechhHHHHHH-HHHH-----hcCCcE
Confidence 000000000 00 0000 0 111112233333443 3589999999987665422 1111 358999
Q ss_pred EEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCccccc
Q 004879 494 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTL 573 (725)
Q Consensus 494 V~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l 573 (725)
++++|+..+.......... ........+..+..+|.++++|+.+++.+... ++
T Consensus 112 i~~~h~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~~-~~------- 164 (374)
T cd03801 112 VLTVHGLEFGRPGNELGLL-------------------LKLARALERRALRRADRIIAVSEATREELREL-GG------- 164 (374)
T ss_pred EEEeccchhhccccchhHH-------------------HHHHHHHHHHHHHhCCEEEEecHHHHHHHHhc-CC-------
Confidence 9999987532211100000 00112234567788999999999888877652 21
Q ss_pred ccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHH
Q 004879 574 NFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHA 653 (725)
Q Consensus 574 ~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA 653 (725)
....++.++|||+|...|.+.. ...+...+.. .+.+.++|+||+.+.||++.+++|
T Consensus 165 -~~~~~~~~i~~~~~~~~~~~~~--------------------~~~~~~~~~~---~~~~~i~~~g~~~~~k~~~~~i~~ 220 (374)
T cd03801 165 -VPPEKITVIPNGVDTERFRPAP--------------------RAARRRLGIP---EDEPVILFVGRLVPRKGVDLLLEA 220 (374)
T ss_pred -CCCCcEEEecCcccccccCccc--------------------hHHHhhcCCc---CCCeEEEEecchhhhcCHHHHHHH
Confidence 1236899999999998776531 1222333333 356789999999999999999999
Q ss_pred HHHhhcC--CcEEEEEcCCCccc-cc--------------------H--HHHHHhcCeEEEcCCcccchHHHHHHcCCCc
Q 004879 654 IYRTLEL--GGQFILLGSSPVPH-IQ--------------------V--YPILLSSFSFLRKHIFNICNLYIKLGQGGDL 708 (725)
Q Consensus 654 ~~~L~~~--~iqLVIvG~Gp~~~-le--------------------~--~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~ 708 (725)
+..+.+. +++|+++|.|+... ++ . ..+|+.||++++||.+|++|++++|||+++.
T Consensus 221 ~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~ 300 (374)
T cd03801 221 LAKLRKEYPDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGL 300 (374)
T ss_pred HHHHhhhcCCeEEEEEeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecchhccccchHHHHHHcCC
Confidence 9988763 79999999876431 11 0 1899999999999999999999999997777
Q ss_pred ccc
Q 004879 709 TVN 711 (725)
Q Consensus 709 ~V~ 711 (725)
||+
T Consensus 301 pvI 303 (374)
T cd03801 301 PVV 303 (374)
T ss_pred cEE
Confidence 755
No 52
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.87 E-value=1.8e-20 Score=193.44 Aligned_cols=267 Identities=17% Similarity=0.218 Sum_probs=176.2
Q ss_pred eEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeC
Q 004879 334 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 413 (725)
Q Consensus 334 kILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~ 413 (725)
||++++..+. .||.+.++..++++|.+.||+|.|+++......... . ... ..
T Consensus 1 kIl~~~~~~~----~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~---~-----------~~~----------~~ 52 (353)
T cd03811 1 KILFVIPSLG----GGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLEL---L-----------PSN----------VK 52 (353)
T ss_pred CeEEEeeccc----CCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccc---c-----------ccc----------hh
Confidence 6889988653 699999999999999999999999997754321100 0 000 00
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCC-chhhHHHHHHHhhccCCCCCCc
Q 004879 414 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDW-QTAFVAPLYWDLYVPKGLNSAR 492 (725)
Q Consensus 414 GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw-~sa~vapl~~~~ya~~gl~~ip 492 (725)
........ . ..+. ...+......+++. .+||+||+|++ .+.++ ..+.. ..++|
T Consensus 53 ~~~~~~~~-------~---~~~~-------~~~~~~~~~~~~~~--~~~dii~~~~~~~~~~~-~~~~~------~~~~~ 106 (353)
T cd03811 53 LIPVRVLK-------L---KSLR-------DLLAILRLRRLLRK--EKPDVVISHLTTTPNVL-ALLAA------RLGTK 106 (353)
T ss_pred hhceeeee-------c---cccc-------chhHHHHHHHHHHh--cCCCEEEEcCccchhHH-HHHHh------hcCCc
Confidence 00000000 0 0000 01122334445553 58999999987 33332 22211 12789
Q ss_pred EEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccc
Q 004879 493 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHST 572 (725)
Q Consensus 493 iV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~ 572 (725)
+|+++|+.......... .. ....+..+..+|.++++|+.+++.+... ++
T Consensus 107 ~i~~~~~~~~~~~~~~~----------------------~~--~~~~~~~~~~~d~ii~~s~~~~~~~~~~-~~------ 155 (353)
T cd03811 107 LIVWEHNSLSLELKRKL----------------------RL--LLLIRKLYRRADKIVAVSEGVKEDLLKL-LG------ 155 (353)
T ss_pred eEEEEcCcchhhhccch----------------------hH--HHHHHhhccccceEEEeccchhhhHHHh-hc------
Confidence 99999987422110000 00 0234666788999999999988877652 21
Q ss_pred cccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHH
Q 004879 573 LNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRH 652 (725)
Q Consensus 573 l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLie 652 (725)
....++.+||||+|...+.+.... .. .++.. .+.++++|+||+.+.||++.+++
T Consensus 156 --~~~~~~~vi~~~~~~~~~~~~~~~------------------~~---~~~~~---~~~~~i~~~g~~~~~k~~~~~i~ 209 (353)
T cd03811 156 --IPPDKIEVIYNPIDIEEIRALAEE------------------PL---ELGIP---PDGPVILAVGRLSPQKGFDTLIR 209 (353)
T ss_pred --CCccccEEecCCcChhhcCcccch------------------hh---hcCCC---CCceEEEEEecchhhcChHHHHH
Confidence 135789999999999877653210 00 23333 35689999999999999999999
Q ss_pred HHHHhhcC--CcEEEEEcCCCccc-ccH--------------------HHHHHhcCeEEEcCCcccchHHHHHHcCCCcc
Q 004879 653 AIYRTLEL--GGQFILLGSSPVPH-IQV--------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLT 709 (725)
Q Consensus 653 A~~~L~~~--~iqLVIvG~Gp~~~-le~--------------------~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~ 709 (725)
|+..+... +++|+++|.|+... +++ ..+|+.||++++||.+|++|++++|||+++.|
T Consensus 210 ~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~P 289 (353)
T cd03811 210 AFALLRKEGPDARLVILGDGPLREELEALAKELGLADRVHFLGFQSNPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTP 289 (353)
T ss_pred HHHHhhhcCCCceEEEEcCCccHHHHHHHHHhcCCCccEEEecccCCHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCC
Confidence 99998763 89999999987542 110 17999999999999999999999999977766
Q ss_pred cc
Q 004879 710 VN 711 (725)
Q Consensus 710 V~ 711 (725)
|+
T Consensus 290 vI 291 (353)
T cd03811 290 VV 291 (353)
T ss_pred EE
Confidence 54
No 53
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.87 E-value=2.4e-20 Score=207.29 Aligned_cols=288 Identities=15% Similarity=0.065 Sum_probs=170.3
Q ss_pred eEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeC
Q 004879 334 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 413 (725)
Q Consensus 334 kILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~ 413 (725)
+|.|++.-+ +|....++.++++|+++||+|+|+++..+.... +. ....
T Consensus 5 ~~~~~~~~~------~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~-~~-------------------------~~~~ 52 (415)
T cd03816 5 RVCVLVLGD------IGRSPRMQYHALSLAKHGWKVDLVGYLETPPHD-EI-------------------------LSNP 52 (415)
T ss_pred EEEEEEecc------cCCCHHHHHHHHHHHhcCceEEEEEecCCCCCH-HH-------------------------hcCC
Confidence 677777632 556677788999999999999999876432110 00 0124
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCchhhhH---HHH-HHHHHHHHHHcCCCceEEEECCCchhhH--HHHHHHhhccCC
Q 004879 414 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRF---SFF-SRAALELLLQAGKQPDIIHCHDWQTAFV--APLYWDLYVPKG 487 (725)
Q Consensus 414 GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~---~~F-sravlelL~~~~~kPDIIH~Hdw~sa~v--apl~~~~ya~~g 487 (725)
|+.++.+....+ .+.+ . ....++ .++ ...++..+.+ ..+|||||+|+....+. ...++..
T Consensus 53 ~v~~~~~~~~~~--~~~~---~---~~~~~~~~~~~~~~~~~~~~l~~-~~~~Dvi~~~~~~~~~~~~~a~~~~~----- 118 (415)
T cd03816 53 NITIHPLPPPPQ--RLNK---L---PFLLFAPLKVLWQFFSLLWLLYK-LRPADYILIQNPPSIPTLLIAWLYCL----- 118 (415)
T ss_pred CEEEEECCCCcc--cccc---c---hHHHHHHHHHHHHHHHHHHHHHh-cCCCCEEEEeCCCCchHHHHHHHHHH-----
Confidence 666666643110 0100 0 000111 111 1122222222 35899999997443221 1222221
Q ss_pred CCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCC
Q 004879 488 LNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQ 567 (725)
Q Consensus 488 l~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~ 567 (725)
+.++|+|+|+|+..+. . .. .+..... .+ ..-...+++..++.||.|+++|+.+++.+.. . +
T Consensus 119 ~~~~~~V~~~h~~~~~-~-----~~-~~~~~~~-----~~----~~~~~~~e~~~~~~ad~ii~vS~~~~~~l~~-~-~- 179 (415)
T cd03816 119 LRRTKLIIDWHNYGYT-I-----LA-LKLGENH-----PL----VRLAKWYEKLFGRLADYNLCVTKAMKEDLQQ-F-N- 179 (415)
T ss_pred HhCCeEEEEcCCchHH-H-----Hh-cccCCCC-----HH----HHHHHHHHHHHhhcCCEeeecCHHHHHHHHh-h-h-
Confidence 2478999999986321 0 00 0000000 00 0011123556678899999999999888764 2 1
Q ss_pred CcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHH-------------HcCCCCCCCCCCE
Q 004879 568 GLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRK-------------HLGLSSADARKPL 634 (725)
Q Consensus 568 GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk-------------~lGL~~~d~~~pl 634 (725)
..+.++.+||||. ...|.|.... ..+..+++ ..++.+ ++.++
T Consensus 180 -------~~~~ki~vI~Ng~-~~~f~p~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v 234 (415)
T cd03816 180 -------NWKIRATVLYDRP-PEQFRPLPLE---------------EKHELFLKLAKTFLTRELRIGAVQLSE--ERPAL 234 (415)
T ss_pred -------ccCCCeeecCCCC-HHHceeCcHH---------------HHHHHHHhccccccccccccccceecC--CCceE
Confidence 2468999999995 4567664211 01111111 122321 23467
Q ss_pred EEEeecCcCCCCHHHHHHHHHHhhc--------CCcEEEEEcCCCccc-ccH-------------------H---HHHHh
Q 004879 635 VGCITRLVPQKGVHLIRHAIYRTLE--------LGGQFILLGSSPVPH-IQV-------------------Y---PILLS 683 (725)
Q Consensus 635 V~fVGRL~~qKGvdlLieA~~~L~~--------~~iqLVIvG~Gp~~~-le~-------------------~---~iyAa 683 (725)
++++||+.++||++.+++|+..+.+ .+++|+|+|+|+... +++ + .+|++
T Consensus 235 i~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~ 314 (415)
T cd03816 235 LVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGPLKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLAS 314 (415)
T ss_pred EEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCccHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHh
Confidence 8889999999999999999998863 369999999998542 111 0 89999
Q ss_pred cCeEEEcCC---cccchHHHHHHcCCCcccc
Q 004879 684 SFSFLRKHI---FNICNLYIKLGQGGDLTVN 711 (725)
Q Consensus 684 ADIfVlPS~---~EpfGLv~LEAMg~~~~V~ 711 (725)
||++|+|+. .|+||++++|||+++.||+
T Consensus 315 aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI 345 (415)
T cd03816 315 ADLGVSLHTSSSGLDLPMKVVDMFGCGLPVC 345 (415)
T ss_pred CCEEEEccccccccCCcHHHHHHHHcCCCEE
Confidence 999998643 5889999999997777754
No 54
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.87 E-value=2.5e-20 Score=197.03 Aligned_cols=258 Identities=16% Similarity=0.109 Sum_probs=172.3
Q ss_pred eEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeC
Q 004879 334 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 413 (725)
Q Consensus 334 kILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~ 413 (725)
||+|+++.|+| |.+.++..++++|.+.||+|+|+++......... .. . ...
T Consensus 1 ki~~~~~~~~~-----~~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~----~~----------~----------~~~ 51 (355)
T cd03799 1 KIAYLVKEFPR-----LSETFILREILALEAAGHEVEIFSLRPPEDTLVH----PE----------D----------RAE 51 (355)
T ss_pred CEEEECCCCCC-----cchHHHHHHHHHHHhCCCeEEEEEecCccccccc----cc----------c----------ccc
Confidence 69999998744 3678999999999999999999997754321100 00 0 000
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcE
Q 004879 414 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 493 (725)
Q Consensus 414 GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipi 493 (725)
+..+. +.. .......+...+...++ ..+||+||+|.+........+... ..++|+
T Consensus 52 ~~~~~---------~~~---------~~~~~~~~~~~~~~~~~--~~~~Dii~~~~~~~~~~~~~~~~~-----~~~~~~ 106 (355)
T cd03799 52 LARTR---------YLA---------RSLALLAQALVLARELR--RLGIDHIHAHFGTTPATVAMLASR-----LGGIPY 106 (355)
T ss_pred ccchH---------HHH---------HHHHHHHHHHHHHHHHH--hcCCCEEEECCCCchHHHHHHHHH-----hcCCCE
Confidence 00000 000 00111112222333333 368999999987544332232222 237899
Q ss_pred EEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCccccc
Q 004879 494 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTL 573 (725)
Q Consensus 494 V~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l 573 (725)
++|+|+.+..... . ....+..+..+|.++++|+.+++.+... ++
T Consensus 107 ~~~~~~~~~~~~~---------------------------~-~~~~~~~~~~~~~vi~~s~~~~~~l~~~-~~------- 150 (355)
T cd03799 107 SFTAHGKDIFRSP---------------------------D-AIDLDEKLARADFVVAISEYNRQQLIRL-LG------- 150 (355)
T ss_pred EEEEecccccccC---------------------------c-hHHHHHHHhhCCEEEECCHHHHHHHHHh-cC-------
Confidence 9999976421100 0 0234566788999999999998887653 12
Q ss_pred ccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHH
Q 004879 574 NFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHA 653 (725)
Q Consensus 574 ~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA 653 (725)
....++.+||||+|.+.|.+.. ... ..+.+.++|+||+.+.||++.+++|
T Consensus 151 -~~~~~~~vi~~~~d~~~~~~~~--------------------------~~~---~~~~~~i~~~g~~~~~k~~~~l~~~ 200 (355)
T cd03799 151 -CDPDKIHVVHCGVDLERFPPRP--------------------------PPP---PGEPLRILSVGRLVEKKGLDYLLEA 200 (355)
T ss_pred -CCcccEEEEeCCcCHHHcCCcc--------------------------ccc---cCCCeEEEEEeeeccccCHHHHHHH
Confidence 2457899999999988776531 000 1245789999999999999999999
Q ss_pred HHHhhc--CCcEEEEEcCCCccc-cc--------------------H--HHHHHhcCeEEEcCCc------ccchHHHHH
Q 004879 654 IYRTLE--LGGQFILLGSSPVPH-IQ--------------------V--YPILLSSFSFLRKHIF------NICNLYIKL 702 (725)
Q Consensus 654 ~~~L~~--~~iqLVIvG~Gp~~~-le--------------------~--~~iyAaADIfVlPS~~------EpfGLv~LE 702 (725)
+..+.+ .+++|+++|.|+... +. . ..+|+.||++++||.+ |+||++++|
T Consensus 201 ~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~E 280 (355)
T cd03799 201 LALLKDRGIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLME 280 (355)
T ss_pred HHHHhhcCCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHH
Confidence 999876 389999999986431 10 0 1899999999999999 999999999
Q ss_pred HcCCCcccc
Q 004879 703 GQGGDLTVN 711 (725)
Q Consensus 703 AMg~~~~V~ 711 (725)
||+++.||+
T Consensus 281 a~a~G~Pvi 289 (355)
T cd03799 281 AMAMGLPVI 289 (355)
T ss_pred HHHcCCCEE
Confidence 997777754
No 55
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.87 E-value=8.4e-21 Score=202.96 Aligned_cols=267 Identities=17% Similarity=0.121 Sum_probs=168.3
Q ss_pred eEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeC
Q 004879 334 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 413 (725)
Q Consensus 334 kILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~ 413 (725)
+|+++++.++|. .++++.+++++|. ||+|.+++.......... . ...
T Consensus 1 ~~~~~~~~~~~~-----~e~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~----------------~----------~~~ 47 (367)
T cd05844 1 RVLIFRPLLLAP-----SETFVRNQAEALR--RFRPVYVGGRRLGPAPLG----------------A----------LAV 47 (367)
T ss_pred CEEEEeCCCCCC-----chHHHHHHHHhcc--cCCcEEEEeeccCCCCCc----------------c----------cce
Confidence 588999988763 6899999999995 788888876533211100 0 001
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcE
Q 004879 414 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 493 (725)
Q Consensus 414 GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipi 493 (725)
++...... .+ ..+ .. .......+......+++ ..+|||||+|....++.+....+ ..++|+
T Consensus 48 ~~~~~~~~--~~---~~~---~~---~~~~~~~~~~~~~~~~~--~~~~dvvh~~~~~~~~~~~~~~~------~~~~p~ 108 (367)
T cd05844 48 RLADLAGG--KA---GLR---LG---ALRLLTGSAPQLRRLLR--RHRPDLVHAHFGFDGVYALPLAR------RLGVPL 108 (367)
T ss_pred eeeecccc--hh---HHH---HH---HHHhccccccHHHHHHH--hhCCCEEEeccCchHHHHHHHHH------HcCCCE
Confidence 11111000 00 000 00 00001112222223344 36899999997655543222222 247999
Q ss_pred EEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCccccc
Q 004879 494 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTL 573 (725)
Q Consensus 494 V~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l 573 (725)
|+|+|+.+...... ...+.. +.......+..+..+|.|+++|+..++.+... |
T Consensus 109 i~~~h~~~~~~~~~---~~~~~~---------------~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~----~----- 161 (367)
T cd05844 109 VVTFHGFDATTSLA---LLLRSR---------------WALYARRRRRLARRAALFIAVSQFIRDRLLAL----G----- 161 (367)
T ss_pred EEEEeCccccccch---hhcccc---------------hhHHHHHHHHHHHhcCEEEECCHHHHHHHHHc----C-----
Confidence 99999864221100 000000 00011234566788999999999888877642 1
Q ss_pred ccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHH
Q 004879 574 NFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHA 653 (725)
Q Consensus 574 ~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA 653 (725)
....++.++|||+|.+.|.|... ..+.+.++|+||+.+.||++.+++|
T Consensus 162 -~~~~~i~vi~~g~d~~~~~~~~~-------------------------------~~~~~~i~~~G~~~~~K~~~~li~a 209 (367)
T cd05844 162 -FPPEKVHVHPIGVDTAKFTPATP-------------------------------ARRPPRILFVGRFVEKKGPLLLLEA 209 (367)
T ss_pred -CCHHHeEEecCCCCHHhcCCCCC-------------------------------CCCCcEEEEEEeeccccChHHHHHH
Confidence 23568999999999887765310 1245789999999999999999999
Q ss_pred HHHhhc--CCcEEEEEcCCCccc-ccH----------------------HHHHHhcCeEEEcCC------cccchHHHHH
Q 004879 654 IYRTLE--LGGQFILLGSSPVPH-IQV----------------------YPILLSSFSFLRKHI------FNICNLYIKL 702 (725)
Q Consensus 654 ~~~L~~--~~iqLVIvG~Gp~~~-le~----------------------~~iyAaADIfVlPS~------~EpfGLv~LE 702 (725)
+..+.+ .+++|+++|+|+... ++. ..+|+.||++|+||. .|+||++++|
T Consensus 210 ~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~E 289 (367)
T cd05844 210 FARLARRVPEVRLVIIGDGPLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLE 289 (367)
T ss_pred HHHHHHhCCCeEEEEEeCchHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHH
Confidence 998875 479999999987431 110 188999999999997 5999999999
Q ss_pred HcCCCcccc
Q 004879 703 GQGGDLTVN 711 (725)
Q Consensus 703 AMg~~~~V~ 711 (725)
||+++.||+
T Consensus 290 A~a~G~PvI 298 (367)
T cd05844 290 AQASGVPVV 298 (367)
T ss_pred HHHcCCCEE
Confidence 997776654
No 56
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.86 E-value=8.5e-20 Score=189.70 Aligned_cols=281 Identities=22% Similarity=0.251 Sum_probs=180.9
Q ss_pred EEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeCC
Q 004879 335 VIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEG 414 (725)
Q Consensus 335 ILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~G 414 (725)
|+++++.++|. ..||.+.++..++++|.+.||+|+|+++......... .. ... . ...
T Consensus 1 iLii~~~~p~~-~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~--~~-----------~~~------~---~~~ 57 (377)
T cd03798 1 ILVISSLYPPP-NNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLD--LL-----------KGR------L---VGV 57 (377)
T ss_pred CeEeccCCCCC-CCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchh--hc-----------ccc------c---ccc
Confidence 67888876653 3699999999999999999999999997644321100 00 000 0 000
Q ss_pred eeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcEE
Q 004879 415 LPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVC 494 (725)
Q Consensus 415 I~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV 494 (725)
...... +.. ............+...+..+++....+||+||+|.+............ ..++|++
T Consensus 58 ~~~~~~--------~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~-----~~~~~~i 121 (377)
T cd03798 58 ERLPVL--------LPV---VPLLKGPLLYLLAARALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKR-----KLGIPLV 121 (377)
T ss_pred cccccC--------cch---hhccccchhHHHHHHHHHHHHhcccCCCCEEEEeccchHHHHHHHHHH-----hcCCCEE
Confidence 000000 000 000000111223444455555522468999999954432221222211 2468999
Q ss_pred EEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccccc
Q 004879 495 FTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLN 574 (725)
Q Consensus 495 ~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~ 574 (725)
+++|+..+...... .......+..+..+|.++++|+..++.+...+
T Consensus 122 ~~~h~~~~~~~~~~------------------------~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~---------- 167 (377)
T cd03798 122 VTLHGSDVNLLPRK------------------------RLLRALLRRALRRADAVIAVSEALADELKALG---------- 167 (377)
T ss_pred EEeecchhcccCch------------------------hhHHHHHHHHHhcCCeEEeCCHHHHHHHHHhc----------
Confidence 99998753211000 00123456678889999999999888776521
Q ss_pred cCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHH
Q 004879 575 FHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 654 (725)
Q Consensus 575 ~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~ 654 (725)
....++.++|||+|...|.+... .+. +.++.. .+.+.++|+|++.+.||++.+++|+
T Consensus 168 ~~~~~~~~i~~~~~~~~~~~~~~-----------------~~~---~~~~~~---~~~~~i~~~g~~~~~k~~~~li~~~ 224 (377)
T cd03798 168 IDPEKVTVIPNGVDTERFSPADR-----------------AEA---RKLGLP---EDKKVILFVGRLVPRKGIDYLIEAL 224 (377)
T ss_pred CCCCceEEcCCCcCcccCCCcch-----------------HHH---HhccCC---CCceEEEEeccCccccCHHHHHHHH
Confidence 13578999999999988876421 011 333433 3568899999999999999999999
Q ss_pred HHhhc--CCcEEEEEcCCCccc-cc--------------------H--HHHHHhcCeEEEcCCcccchHHHHHHcCCCcc
Q 004879 655 YRTLE--LGGQFILLGSSPVPH-IQ--------------------V--YPILLSSFSFLRKHIFNICNLYIKLGQGGDLT 709 (725)
Q Consensus 655 ~~L~~--~~iqLVIvG~Gp~~~-le--------------------~--~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~ 709 (725)
..+.+ .+++|+++|.|+... +. . ..+|+.||++++||.+|++|++++|||+++.|
T Consensus 225 ~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~p 304 (377)
T cd03798 225 ARLLKKRPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLP 304 (377)
T ss_pred HHHHhcCCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCC
Confidence 99875 379999999986431 10 0 18999999999999999999999999988777
Q ss_pred cc
Q 004879 710 VN 711 (725)
Q Consensus 710 V~ 711 (725)
|+
T Consensus 305 vI 306 (377)
T cd03798 305 VV 306 (377)
T ss_pred EE
Confidence 65
No 57
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.86 E-value=9.8e-20 Score=188.81 Aligned_cols=272 Identities=19% Similarity=0.154 Sum_probs=178.1
Q ss_pred eEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeC
Q 004879 334 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 413 (725)
Q Consensus 334 kILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~ 413 (725)
||+++++. .||...++..++++|.+.||+|+++++....... . ...
T Consensus 1 kIl~i~~~------~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~-----~-----------------------~~~ 46 (359)
T cd03808 1 KILHIVTV------DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEE-----L-----------------------EAL 46 (359)
T ss_pred CeeEEEec------chhHHHHHHHHHHHHHhcCCeeEEEecCCCcccc-----c-----------------------ccC
Confidence 68899874 5899999999999999999999999876432110 0 113
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcE
Q 004879 414 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 493 (725)
Q Consensus 414 GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipi 493 (725)
|+.++.++.. +.... ..+..........+++ ..+||+||+|.+.+..++.+.... ..+.++
T Consensus 47 ~~~~~~~~~~-------~~~~~-----~~~~~~~~~~~~~~~~--~~~~dvv~~~~~~~~~~~~~~~~~-----~~~~~~ 107 (359)
T cd03808 47 GVKVIPIPLD-------RRGIN-----PFKDLKALLRLYRLLR--KERPDIVHTHTPKPGILGRLAARL-----AGVPKV 107 (359)
T ss_pred CceEEecccc-------ccccC-----hHhHHHHHHHHHHHHH--hcCCCEEEEccccchhHHHHHHHH-----cCCCCE
Confidence 4444444311 00000 0111111222334444 368999999987666543332221 246789
Q ss_pred EEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCccccc
Q 004879 494 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTL 573 (725)
Q Consensus 494 V~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l 573 (725)
++++|+..+...... . . ......+.+..+..+|.++++|+...+.+......
T Consensus 108 i~~~~~~~~~~~~~~--~------~-------------~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~------- 159 (359)
T cd03808 108 IYTVHGLGFVFTSGG--L------K-------------RRLYLLLERLALRFTDKVIFQNEDDRDLALKLGII------- 159 (359)
T ss_pred EEEecCcchhhccch--h------H-------------HHHHHHHHHHHHhhccEEEEcCHHHHHHHHHhcCC-------
Confidence 999998742211100 0 0 00011234667778999999999988877652210
Q ss_pred ccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHH
Q 004879 574 NFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHA 653 (725)
Q Consensus 574 ~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA 653 (725)
....++.+++||+|...+.+... . . ..+.+.++|+||+.+.||++.+++|
T Consensus 160 -~~~~~~~~~~~~~~~~~~~~~~~-----------------~---------~---~~~~~~i~~~G~~~~~k~~~~li~~ 209 (359)
T cd03808 160 -KKKKTVLIPGSGVDLDRFSPSPE-----------------P---------I---PEDDPVFLFVARLLKDKGIDELLEA 209 (359)
T ss_pred -CcCceEEecCCCCChhhcCcccc-----------------c---------c---CCCCcEEEEEeccccccCHHHHHHH
Confidence 12457788899999887765310 0 1 1256899999999999999999999
Q ss_pred HHHhhc--CCcEEEEEcCCCcccc------cH----------------HHHHHhcCeEEEcCCcccchHHHHHHcCCCcc
Q 004879 654 IYRTLE--LGGQFILLGSSPVPHI------QV----------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLT 709 (725)
Q Consensus 654 ~~~L~~--~~iqLVIvG~Gp~~~l------e~----------------~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~ 709 (725)
+..+.+ .+++|+++|.++.... .. ..+|+.||++++||.+|+||++++|||+++.|
T Consensus 210 ~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~P 289 (359)
T cd03808 210 ARILKAKGPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADVFVLPSYREGLPRVLLEAMAMGRP 289 (359)
T ss_pred HHHHHhcCCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeeccccHHHHHHhccEEEecCcccCcchHHHHHHHcCCC
Confidence 998874 5799999999875421 11 18999999999999999999999999977777
Q ss_pred cc-CCCCC
Q 004879 710 VN-NNCEP 716 (725)
Q Consensus 710 V~-~~~~G 716 (725)
|+ ++.+|
T Consensus 290 vi~s~~~~ 297 (359)
T cd03808 290 VIATDVPG 297 (359)
T ss_pred EEEecCCC
Confidence 54 43433
No 58
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.86 E-value=4.3e-20 Score=190.63 Aligned_cols=256 Identities=16% Similarity=0.137 Sum_probs=169.6
Q ss_pred eEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeC
Q 004879 334 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 413 (725)
Q Consensus 334 kILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~ 413 (725)
||+++++.+.| .||.+.++..++++|.+.||+|+++++......... ...
T Consensus 1 kI~i~~~~~~~---~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~---------------------------~~~ 50 (348)
T cd03820 1 KILFVIPSLGN---AGGAERVLSNLANALAEKGHEVTIISLDKGEPPFYE---------------------------LDP 50 (348)
T ss_pred CeEEEeccccC---CCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCccc---------------------------cCC
Confidence 68999987765 699999999999999999999999997754310000 012
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCC-Cc
Q 004879 414 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNS-AR 492 (725)
Q Consensus 414 GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~-ip 492 (725)
++.+..+.... .. ..+ ....+...+..+++ ..+||+||+|++.... +..... .+ +|
T Consensus 51 ~~~~~~~~~~~----~~--~~~-------~~~~~~~~~~~~l~--~~~~d~i~~~~~~~~~----~~~~~~----~~~~~ 107 (348)
T cd03820 51 KIKVIDLGDKR----DS--KLL-------ARFKKLRRLRKLLK--NNKPDVVISFLTSLLT----FLASLG----LKIVK 107 (348)
T ss_pred ccceeeccccc----cc--chh-------ccccchHHHHHhhc--ccCCCEEEEcCchHHH----HHHHHh----hcccc
Confidence 22222222100 00 000 00111222333444 3689999999876111 111111 23 59
Q ss_pred EEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccc
Q 004879 493 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHST 572 (725)
Q Consensus 493 iV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~ 572 (725)
+|++.|+....... . .......+..+..+|.++++|+..+. ... .
T Consensus 108 ~i~~~~~~~~~~~~--~-----------------------~~~~~~~~~~~~~~d~ii~~s~~~~~-~~~--~------- 152 (348)
T cd03820 108 LIVSEHNSPDAYKK--R-----------------------LRRLLLRRLLYRRADAVVVLTEEDRA-LYY--K------- 152 (348)
T ss_pred EEEecCCCccchhh--h-----------------------hHHHHHHHHHHhcCCEEEEeCHHHHH-Hhh--c-------
Confidence 99999976321100 0 00011356778899999999988762 111 1
Q ss_pred cccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHH
Q 004879 573 LNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRH 652 (725)
Q Consensus 573 l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLie 652 (725)
....++.+||||+|...+.+. . ..+.+.++|+||+.+.||++.+++
T Consensus 153 --~~~~~~~vi~~~~~~~~~~~~-----------------------------~---~~~~~~i~~~g~~~~~K~~~~l~~ 198 (348)
T cd03820 153 --KFNKNVVVIPNPLPFPPEEPS-----------------------------S---DLKSKRILAVGRLVPQKGFDLLIE 198 (348)
T ss_pred --cCCCCeEEecCCcChhhcccc-----------------------------C---CCCCcEEEEEEeeccccCHHHHHH
Confidence 235689999999998755431 0 124578999999999999999999
Q ss_pred HHHHhhc--CCcEEEEEcCCCccc-ccH--------------------HHHHHhcCeEEEcCCcccchHHHHHHcCCCcc
Q 004879 653 AIYRTLE--LGGQFILLGSSPVPH-IQV--------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLT 709 (725)
Q Consensus 653 A~~~L~~--~~iqLVIvG~Gp~~~-le~--------------------~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~ 709 (725)
|+..+.+ .+++|+|+|+|+.+. +.+ ..+|+.||++++||.+|+||++++|||+++.|
T Consensus 199 ~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~P 278 (348)
T cd03820 199 AWAKIAKKHPDWKLRIVGDGPEREALEALIKELGLEDRVILLGFTKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLP 278 (348)
T ss_pred HHHHHHhcCCCeEEEEEeCCCCHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCEEEeCccccccCHHHHHHHHcCCC
Confidence 9999864 589999999987542 110 18999999999999999999999999977777
Q ss_pred cc
Q 004879 710 VN 711 (725)
Q Consensus 710 V~ 711 (725)
|+
T Consensus 279 vi 280 (348)
T cd03820 279 VI 280 (348)
T ss_pred EE
Confidence 55
No 59
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.85 E-value=9.8e-20 Score=206.72 Aligned_cols=210 Identities=12% Similarity=0.096 Sum_probs=137.0
Q ss_pred HHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcEE-EEeeCCcccCCCChhhhhhcCCcccccCCccccc
Q 004879 450 AALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVC-FTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQ 528 (725)
Q Consensus 450 avlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV-~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~ 528 (725)
+...+++ ..+|||||+|+..+.+.+.+ ... +.++|++ .+.|++. .. .....+. .
T Consensus 271 ~l~~~ir--~~rpDIVHt~~~~a~l~g~l-aA~-----lagvpviv~~~h~~~-~~-~~~r~~~-----~---------- 325 (578)
T PRK15490 271 HLVPHLC--ERKLDYLSVWQDGACLMIAL-AAL-----IAGVPRIQLGLRGLP-PV-VRKRLFK-----P---------- 325 (578)
T ss_pred HHHHHHH--HcCCCEEEEcCcccHHHHHH-HHH-----hcCCCEEEEeecccC-Cc-chhhHHH-----H----------
Confidence 3445555 36999999998765544322 221 2477875 5577621 10 0000000 0
Q ss_pred ccccccchhhhh---hhhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccC
Q 004879 529 DNSAHDRINPLK---GAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYN 605 (725)
Q Consensus 529 d~~~~~~in~~k---~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys 605 (725)
...+.. ..+..+| ++++|...++.+.. .++ .+..|+.+||||||+..|.|..+.
T Consensus 326 ------e~~~~~~a~~i~~~sd-~v~~s~~v~~~l~~-~lg--------ip~~KI~VIyNGVD~~rf~p~~~~------- 382 (578)
T PRK15490 326 ------EYEPLYQALAVVPGVD-FMSNNHCVTRHYAD-WLK--------LEAKHFQVVYNGVLPPSTEPSSEV------- 382 (578)
T ss_pred ------HHHHhhhhceeEecch-hhhccHHHHHHHHH-HhC--------CCHHHEEEEeCCcchhhcCccchh-------
Confidence 000000 1134455 77888877777654 222 367899999999999988875210
Q ss_pred cccccchhhhHHHHHH--HcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhc--CCcEEEEEcCCCccc-ccH---
Q 004879 606 ANDLQGKAENKESIRK--HLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVPH-IQV--- 677 (725)
Q Consensus 606 ~~d~~gK~~~K~aLRk--~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~--~~iqLVIvG~Gp~~~-le~--- 677 (725)
....++ ..+++ ++.++|+++||+.++||+..+++|+..+.+ .+++|+|+|+|+... +++
T Consensus 383 ----------~~~~r~~~~~~l~---~~~~vIg~VgRl~~~Kg~~~LI~A~a~llk~~pdirLvIVGdG~~~eeLk~la~ 449 (578)
T PRK15490 383 ----------PHKIWQQFTQKTQ---DADTTIGGVFRFVGDKNPFAWIDFAARYLQHHPATRFVLVGDGDLRAEAQKRAE 449 (578)
T ss_pred ----------hHHHHHHhhhccC---CCCcEEEEEEEEehhcCHHHHHHHHHHHHhHCCCeEEEEEeCchhHHHHHHHHH
Confidence 011222 23443 245899999999999999999999988765 479999999998642 211
Q ss_pred -----------------HHHHHhcCeEEEcCCcccchHHHHHHcCCCccc------------cCCCCCceee
Q 004879 678 -----------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTV------------NNNCEPWLHH 720 (725)
Q Consensus 678 -----------------~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V------------~~~~~G~l~~ 720 (725)
..+|++||+||+||.+|+||++++|||+++.|| .++.+||++.
T Consensus 450 elgL~d~V~FlG~~~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~GlPVVATdvGG~~EiV~dG~nG~LVp 521 (578)
T PRK15490 450 QLGILERILFVGASRDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGVPVISTPAGGSAECFIEGVSGFILD 521 (578)
T ss_pred HcCCCCcEEECCChhhHHHHHHhCCEEEEcccccCccHHHHHHHHhCCCEEEeCCCCcHHHcccCCcEEEEC
Confidence 188999999999999999999999999555554 4556676654
No 60
>PLN02275 transferase, transferring glycosyl groups
Probab=99.83 E-value=4.8e-19 Score=193.86 Aligned_cols=271 Identities=15% Similarity=0.033 Sum_probs=161.5
Q ss_pred CCcHHHHHHHHHHHHHHCCC-eEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeCCeeEEEeCCCCCC
Q 004879 348 VGGLGDVVAGLGKALQKKGH-LVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPD 426 (725)
Q Consensus 348 vGGlg~vV~~LaraL~~~GH-eV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~GI~V~~I~~~~ps 426 (725)
-+|.+..+..++..+.++|| +|+|++...+....+ . ....|++++.++. |.
T Consensus 14 ~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~----~----------------------~~~~~v~v~r~~~--~~ 65 (371)
T PLN02275 14 DFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPA----L----------------------LNHPSIHIHLMVQ--PR 65 (371)
T ss_pred CCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHH----H----------------------hcCCcEEEEECCC--cc
Confidence 46788999999999999886 799998543211100 0 0134677776642 11
Q ss_pred cccccCCCCCCCchhhhHHHH----HHHHHHHHHHcCCCceEEEECCCchhh--HHHHHHHhhccCCCCCCcEEEEeeCC
Q 004879 427 KFFWRGQFYGEHDDFRRFSFF----SRAALELLLQAGKQPDIIHCHDWQTAF--VAPLYWDLYVPKGLNSARVCFTCHNF 500 (725)
Q Consensus 427 ~~F~r~~~Yg~~dd~~r~~~F----sravlelL~~~~~kPDIIH~Hdw~sa~--vapl~~~~ya~~gl~~ipiV~TiHn~ 500 (725)
.......+. ....+.+| -..++..+.....+|||||+|+..... ++..+... ..++|+|+|+|++
T Consensus 66 -~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~-----~~~~p~v~~~h~~ 136 (371)
T PLN02275 66 -LLQRLPRVL---YALALLLKVAIQFLMLLWFLCVKIPRPDVFLVQNPPSVPTLAVVKLACW-----LRRAKFVIDWHNF 136 (371)
T ss_pred -cccccccch---HHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHH-----HhCCCEEEEcCCc
Confidence 110000000 00001111 122333322225799999999755322 11122221 2478999999986
Q ss_pred cccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcE
Q 004879 501 EYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKF 580 (725)
Q Consensus 501 ~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv 580 (725)
.+. ....|...... + ..-...+++..++.||.|+++|+.+++.+... +| . ++
T Consensus 137 ~~~-------~~~~~~~~~~~-----~----~~~~~~~e~~~~~~ad~ii~~S~~~~~~l~~~-~g--~---------~i 188 (371)
T PLN02275 137 GYT-------LLALSLGRSHP-----L----VRLYRWYERHYGKMADGHLCVTKAMQHELDQN-WG--I---------RA 188 (371)
T ss_pred cHH-------HHhcccCCCCH-----H----HHHHHHHHHHHHhhCCEEEECCHHHHHHHHHh-cC--C---------Ce
Confidence 311 00011100000 0 01112346777889999999999998887652 21 1 27
Q ss_pred EEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhh--
Q 004879 581 VGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL-- 658 (725)
Q Consensus 581 ~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~-- 658 (725)
.+||||+ .+.|.|.... . .+.. ....+++++||+.++||++.+++|+..+.
T Consensus 189 ~vi~n~~-~~~f~~~~~~----------------------~--~~~~--~~~~~i~~~grl~~~k~~~~li~a~~~l~~~ 241 (371)
T PLN02275 189 TVLYDQP-PEFFRPASLE----------------------I--RLRP--NRPALVVSSTSWTPDEDFGILLEAAVMYDRR 241 (371)
T ss_pred EEECCCC-HHHcCcCCch----------------------h--cccC--CCcEEEEEeCceeccCCHHHHHHHHHHHHhh
Confidence 8999995 4667664210 0 0111 12357889999999999999999998763
Q ss_pred -----------------cCCcEEEEEcCCCccc-ccH-------------------H---HHHHhcCeEEEcCC---ccc
Q 004879 659 -----------------ELGGQFILLGSSPVPH-IQV-------------------Y---PILLSSFSFLRKHI---FNI 695 (725)
Q Consensus 659 -----------------~~~iqLVIvG~Gp~~~-le~-------------------~---~iyAaADIfVlPS~---~Ep 695 (725)
..+++|+|+|+|+... +++ + .+|++||++|+||. .|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~ 321 (371)
T PLN02275 242 VAARLNESDSASGKQSLYPRLLFIITGKGPQKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLD 321 (371)
T ss_pred hhhccccccccccccccCCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEecccccccc
Confidence 1479999999998642 211 1 78999999998742 489
Q ss_pred chHHHHHHcCCCccc
Q 004879 696 CNLYIKLGQGGDLTV 710 (725)
Q Consensus 696 fGLv~LEAMg~~~~V 710 (725)
||++++|||+++.||
T Consensus 322 ~p~~llEAmA~G~PV 336 (371)
T PLN02275 322 LPMKVVDMFGCGLPV 336 (371)
T ss_pred ccHHHHHHHHCCCCE
Confidence 999999999766665
No 61
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.83 E-value=5e-19 Score=197.25 Aligned_cols=299 Identities=17% Similarity=0.096 Sum_probs=173.8
Q ss_pred cCCCCCCC-cHHHHHHHHHHHHHHC--CCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeCCeeEE
Q 004879 342 MAPVAKVG-GLGDVVAGLGKALQKK--GHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVY 418 (725)
Q Consensus 342 ~~P~~kvG-Glg~vV~~LaraL~~~--GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~GI~V~ 418 (725)
++|....| |.++++.+.+++|++. ||+|.|+|..++...... +.. ....|.. ...+++.+.
T Consensus 6 ~hp~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~---l~~----~~~~f~~---------~~~~~~~~~ 69 (419)
T cd03806 6 FHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEI---LEK----VESRFNI---------ELDRPRIVF 69 (419)
T ss_pred ECCCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHH---HHH----HHHhcCe---------ecCCCceEE
Confidence 46776777 9999999999999998 899999988766432110 100 0011111 112344433
Q ss_pred EeC-CCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHc-CCCceEEEECC-CchhhHHHHHHHhhccCCCCCCcEEE
Q 004879 419 FIE-PHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQA-GKQPDIIHCHD-WQTAFVAPLYWDLYVPKGLNSARVCF 495 (725)
Q Consensus 419 ~I~-~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~-~~kPDIIH~Hd-w~sa~vapl~~~~ya~~gl~~ipiV~ 495 (725)
++. ... ++. ...|+.-.. ...++. .+...++.. +.+|||+-.|. |..++ |+. .. +.++|+|+
T Consensus 70 ~~~~~~~---~~~-~~~~~r~~~--~~~~~~-~~~~~~~~~~~~~pDv~i~~~g~~~~~--~~~-~~-----~~~~~~i~ 134 (419)
T cd03806 70 FLLKYRK---LVE-ASTYPRFTL--LGQALG-SMILGLEALLKLVPDIFIDTMGYPFTY--PLV-RL-----LGGCPVGA 134 (419)
T ss_pred EEeccee---eec-cccCCceee--HHHHHH-HHHHHHHHHHhcCCCEEEEcCCcccHH--HHH-HH-----hcCCeEEE
Confidence 321 000 111 112221000 111122 222222222 45899998886 43322 222 22 23789999
Q ss_pred EeeCCcccCCCChhhhh--hcCCcccccCCcccccccc--------cc-cchhhhhhhhhhccEEEEeCHHHHHHHHhhc
Q 004879 496 TCHNFEYQGTAPAKELA--SCGLDVQQLNRPDRMQDNS--------AH-DRINPLKGAIVFSNIVTTVSPSYAQEVRTSE 564 (725)
Q Consensus 496 TiHn~~~qg~~p~~~l~--~~Gl~~~~l~~~~~l~d~~--------~~-~~in~~k~ai~~AD~VitVS~~~a~ev~~~~ 564 (725)
-+|-.. .+.+.+. .+|-.. +++...+..+. ++ ....+++..+..||.|+++|+..++.+...
T Consensus 135 y~h~P~----~~~d~l~~~~~~~~~--~~~~~~~~~~~~~~~~k~~y~~~~~~~~~~~~~~aD~ii~~S~~~~~~~~~~- 207 (419)
T cd03806 135 YVHYPT----ISTDMLQKVRSREAS--YNNSATIARSPVLSKAKLLYYRLFAFLYGLAGSFADVVMVNSTWTRNHIRSL- 207 (419)
T ss_pred EecCCc----chHHHHHHHhhcccc--ccCccchhccchHHHHHHHHHHHHHHHHHHHhhcCCEEEECCHHHHHHHHHH-
Confidence 999321 1112221 111100 00000000000 00 011256778889999999999888877652
Q ss_pred cCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCC
Q 004879 565 GGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQ 644 (725)
Q Consensus 565 ~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~q 644 (725)
++ ...++.+||||+|++.|.|... .. ..+.++|+|+||+.++
T Consensus 208 ~~---------~~~~~~vi~~gvd~~~~~~~~~--------------------------~~---~~~~~~il~vgr~~~~ 249 (419)
T cd03806 208 WK---------RNTKPSIVYPPCDVEELLKLPL--------------------------DE---KTRENQILSIAQFRPE 249 (419)
T ss_pred hC---------cCCCcEEEcCCCCHHHhccccc--------------------------cc---ccCCcEEEEEEeecCC
Confidence 21 1247899999999887755310 00 1245799999999999
Q ss_pred CCHHHHHHHHHHhhcC-------CcEEEEEcCCCcc-------cccH----------------------HHHHHhcCeEE
Q 004879 645 KGVHLIRHAIYRTLEL-------GGQFILLGSSPVP-------HIQV----------------------YPILLSSFSFL 688 (725)
Q Consensus 645 KGvdlLieA~~~L~~~-------~iqLVIvG~Gp~~-------~le~----------------------~~iyAaADIfV 688 (725)
||++++++|+..+.+. +++++|+|+|+.. .+++ ..+|+.||+++
T Consensus 250 K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv~v 329 (419)
T cd03806 250 KNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELSTASIGL 329 (419)
T ss_pred CCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHhCeEEE
Confidence 9999999999988752 4899999987432 1111 08999999999
Q ss_pred EcCCcccchHHHHHHcCCCcc-ccCCCCC
Q 004879 689 RKHIFNICNLYIKLGQGGDLT-VNNNCEP 716 (725)
Q Consensus 689 lPS~~EpfGLv~LEAMg~~~~-V~~~~~G 716 (725)
+||..|+||++++|||+++.+ |.++.+|
T Consensus 330 ~~s~~E~Fgi~~lEAMa~G~pvIa~~~gg 358 (419)
T cd03806 330 HTMWNEHFGIGVVEYMAAGLIPLAHASGG 358 (419)
T ss_pred ECCccCCcccHHHHHHHcCCcEEEEcCCC
Confidence 999999999999999976664 3344444
No 62
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.83 E-value=8.1e-20 Score=200.82 Aligned_cols=298 Identities=14% Similarity=0.074 Sum_probs=170.9
Q ss_pred EEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeCC
Q 004879 335 VIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEG 414 (725)
Q Consensus 335 ILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~G 414 (725)
||++|+. .|+...+|-...++++.++|++. |+|++++...+..+......++.+ .+.
T Consensus 1 iL~~~~~-~P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~~~~~~~~~~~l~~~---------------------~~~ 57 (397)
T TIGR03087 1 ILYLVHR-IPYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVDDPEDWQYAAALRPL---------------------CEE 57 (397)
T ss_pred CeeecCC-CCCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCCCcccHHHHHHHHHH---------------------hhe
Confidence 6788875 44444555589999999999775 999999976433221111112111 000
Q ss_pred eeEEEeCCCC-----CCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCC
Q 004879 415 LPVYFIEPHH-----PDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLN 489 (725)
Q Consensus 415 I~V~~I~~~~-----ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~ 489 (725)
+.+..+++.. ...++. +.++.. ......-+.+.+.+.+. ..++|+||+|....+. +... ...
T Consensus 58 ~~~~~~~~~~~~~~~~~~l~~-~~p~~~--~~~~~~~~~~~l~~~~~--~~~~D~v~~~~~~~~~----~~~~----~~~ 124 (397)
T TIGR03087 58 VCVVPLDPRVARLRSLLGLLT-GEPLSL--PYYRSRRLARWVNALLA--AEPVDAIVVFSSAMAQ----YVTP----HVR 124 (397)
T ss_pred eEEeecCcHHHHHHHHhhhcC-CCCCcc--hhhCCHHHHHHHHHHHh--hCCCCEEEEeccccce----eccc----ccc
Confidence 1110010000 000110 011110 00000112233333333 3689999999643221 1110 124
Q ss_pred CCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCc
Q 004879 490 SARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGL 569 (725)
Q Consensus 490 ~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL 569 (725)
++|+|++.|+.+... +. ......+.+...+. +.+ ......+++..+..+|.|+++|+..++.+... ++
T Consensus 125 ~~p~i~~~~d~~~~~-~~-~~~~~~~~~~~~~~---~~~---~~~~~~~e~~~~~~ad~vi~~S~~~~~~l~~~-~~--- 192 (397)
T TIGR03087 125 GVPRIVDFVDVDSDK-WL-QYARTKRWPLRWIY---RRE---GRLLLAYERAIAARFDAATFVSRAEAELFRRL-AP--- 192 (397)
T ss_pred CCCeEeehhhHHHHH-HH-HHHhccCcchhHHH---HHH---HHHHHHHHHHHHhhCCeEEEcCHHHHHHHHHh-CC---
Confidence 789999999864210 00 00000000000000 000 00112356778889999999999988877642 11
Q ss_pred ccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHH
Q 004879 570 HSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHL 649 (725)
Q Consensus 570 ~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdl 649 (725)
....++.+||||||.+.|.|..+. .-.++ ++.++++|+||+.+.||++.
T Consensus 193 -----~~~~~v~vipngvd~~~f~~~~~~-----------------------~~~~~---~~~~~ilf~G~l~~~k~~~~ 241 (397)
T TIGR03087 193 -----EAAGRITAFPNGVDADFFSPDRDY-----------------------PNPYP---PGKRVLVFTGAMDYWPNIDA 241 (397)
T ss_pred -----CCCCCeEEeecccchhhcCCCccc-----------------------cCCCC---CCCcEEEEEEecCCccCHHH
Confidence 134689999999999988764210 00111 24578999999999999998
Q ss_pred HH----HHHHHhhc--CCcEEEEEcCCCcccccH----------------HHHHHhcCeEEEcCC-cccchHHHHHHcCC
Q 004879 650 IR----HAIYRTLE--LGGQFILLGSSPVPHIQV----------------YPILLSSFSFLRKHI-FNICNLYIKLGQGG 706 (725)
Q Consensus 650 Li----eA~~~L~~--~~iqLVIvG~Gp~~~le~----------------~~iyAaADIfVlPS~-~EpfGLv~LEAMg~ 706 (725)
++ ++++.+.+ .+++|+|+|+|+...+++ ..+|++||++|+||. .|++|++++|||++
T Consensus 242 l~~~~~~~~~~l~~~~p~~~l~ivG~g~~~~~~~l~~~~~V~~~G~v~~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~ 321 (397)
T TIGR03087 242 VVWFAERVFPAVRARRPAAEFYIVGAKPSPAVRALAALPGVTVTGSVADVRPYLAHAAVAVAPLRIARGIQNKVLEAMAM 321 (397)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEECCCChHHHHHhccCCCeEEeeecCCHHHHHHhCCEEEecccccCCcccHHHHHHHc
Confidence 87 45555543 479999999997543211 189999999999998 59999999999988
Q ss_pred Ccccc
Q 004879 707 DLTVN 711 (725)
Q Consensus 707 ~~~V~ 711 (725)
+.||+
T Consensus 322 G~PVV 326 (397)
T TIGR03087 322 AKPVV 326 (397)
T ss_pred CCCEE
Confidence 77764
No 63
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.80 E-value=7.2e-19 Score=198.81 Aligned_cols=206 Identities=17% Similarity=0.126 Sum_probs=136.3
Q ss_pred CCCceEEEECCCc-hhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCccccccccccc-ch
Q 004879 459 GKQPDIIHCHDWQ-TAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHD-RI 536 (725)
Q Consensus 459 ~~kPDIIH~Hdw~-sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~-~i 536 (725)
..++||||+|+.. +++++.+ ... ..++|+|+|.|+...... ...+......... +.. .+.. ..
T Consensus 171 ~~~~dviH~~s~~~~g~~~~~-~~~-----~~~~p~I~t~Hg~~~~e~--~~~~~~~~~~~~~------~~~-~~~~~~~ 235 (475)
T cd03813 171 LPKADVYHAVSTGYAGLLGAL-AKA-----RRGTPFLLTEHGIYTRER--KIELLQADWEMSY------FRR-LWIRFFE 235 (475)
T ss_pred CCCCCEEeccCcchHHHHHHH-HHH-----HhCCCEEEecCCccHHHH--HHHHHhcccchHH------HHH-HHHHHHH
Confidence 3578999999743 3343222 221 258999999998631100 0000000000000 000 0000 11
Q ss_pred hhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhH
Q 004879 537 NPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENK 616 (725)
Q Consensus 537 n~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K 616 (725)
.+.+.++..||.|+++|+...+.... .| .++.|+.+||||+|.+.|.|....
T Consensus 236 ~l~~~~~~~ad~Ii~~s~~~~~~~~~--~g--------~~~~ki~vIpNgid~~~f~~~~~~------------------ 287 (475)
T cd03813 236 SLGRLAYQAADRITTLYEGNRERQIE--DG--------ADPEKIRVIPNGIDPERFAPARRA------------------ 287 (475)
T ss_pred HHHHHHHHhCCEEEecCHHHHHHHHH--cC--------CCHHHeEEeCCCcCHHHcCCcccc------------------
Confidence 24567788999999999987665443 22 246789999999999888764210
Q ss_pred HHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhc--CCcEEEEEcCCCcc-cc----cH------------
Q 004879 617 ESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVP-HI----QV------------ 677 (725)
Q Consensus 617 ~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~--~~iqLVIvG~Gp~~-~l----e~------------ 677 (725)
+. .++.++|+|+||+.+.||++.+++|+..+.+ .+++|+|+|+|+.. .+ ++
T Consensus 288 -------~~---~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~ 357 (475)
T cd03813 288 -------RP---EKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVK 357 (475)
T ss_pred -------cc---CCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEE
Confidence 11 1356899999999999999999999998875 48999999998522 11 11
Q ss_pred -------HHHHHhcCeEEEcCCcccchHHHHHHcCCCcccc-CCCCCc
Q 004879 678 -------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVN-NNCEPW 717 (725)
Q Consensus 678 -------~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V~-~~~~G~ 717 (725)
..+|+.||++|+||..|+||++++|||+++.||+ ++++|.
T Consensus 358 f~G~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~g~~ 405 (475)
T cd03813 358 FTGFQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVATDVGSC 405 (475)
T ss_pred EcCCccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEECCCCCh
Confidence 1799999999999999999999999998877754 455444
No 64
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.76 E-value=1.8e-17 Score=177.79 Aligned_cols=135 Identities=16% Similarity=0.142 Sum_probs=105.2
Q ss_pred hhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHH
Q 004879 538 PLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKE 617 (725)
Q Consensus 538 ~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~ 617 (725)
+.+..+..+|.++++|+.+++.+.. .+ ..+..+|+||+|.+.|.|..
T Consensus 146 ~~~~~~~~~d~ii~~S~~~~~~~~~-~~-----------~~~~~vi~~~~d~~~~~~~~--------------------- 192 (351)
T cd03804 146 WDRRSAARVDYFIANSRFVARRIKK-YY-----------GRDATVIYPPVDTDRFTPAE--------------------- 192 (351)
T ss_pred HHHHHhcCCCEEEECCHHHHHHHHH-Hh-----------CCCcEEECCCCCHhhcCcCC---------------------
Confidence 3456678999999999999988865 22 23567999999998776531
Q ss_pred HHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhcCCcEEEEEcCCCccc-ccH-----------------HH
Q 004879 618 SIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPVPH-IQV-----------------YP 679 (725)
Q Consensus 618 aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~~~iqLVIvG~Gp~~~-le~-----------------~~ 679 (725)
...+.++|+||+.+.||++.+++|+..+. ++|+|+|+|+... +++ ..
T Consensus 193 ------------~~~~~il~~G~~~~~K~~~~li~a~~~~~---~~l~ivG~g~~~~~l~~~~~~~V~~~g~~~~~~~~~ 257 (351)
T cd03804 193 ------------EKEDYYLSVGRLVPYKRIDLAIEAFNKLG---KRLVVIGDGPELDRLRAKAGPNVTFLGRVSDEELRD 257 (351)
T ss_pred ------------CCCCEEEEEEcCccccChHHHHHHHHHCC---CcEEEEECChhHHHHHhhcCCCEEEecCCCHHHHHH
Confidence 12367999999999999999999998864 8999999997532 111 17
Q ss_pred HHHhcCeEEEcCCcccchHHHHHHcCCCcccc-CCCCCceeee
Q 004879 680 ILLSSFSFLRKHIFNICNLYIKLGQGGDLTVN-NNCEPWLHHI 721 (725)
Q Consensus 680 iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V~-~~~~G~l~~~ 721 (725)
+|++||++++||. |+||++++|||+++.||+ ++.+|.-..+
T Consensus 258 ~~~~ad~~v~ps~-e~~g~~~~Eama~G~Pvi~~~~~~~~e~i 299 (351)
T cd03804 258 LYARARAFLFPAE-EDFGIVPVEAMASGTPVIAYGKGGALETV 299 (351)
T ss_pred HHHhCCEEEECCc-CCCCchHHHHHHcCCCEEEeCCCCCccee
Confidence 9999999999999 999999999997777754 4555544433
No 65
>PHA01630 putative group 1 glycosyl transferase
Probab=99.75 E-value=1.2e-17 Score=181.09 Aligned_cols=175 Identities=10% Similarity=0.066 Sum_probs=122.6
Q ss_pred CchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhh-hhhccE
Q 004879 470 WQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGA-IVFSNI 548 (725)
Q Consensus 470 w~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~a-i~~AD~ 548 (725)
.++.+..+.+|+... ..++|+|+|+|+.+. .. ..++... ...+|.
T Consensus 52 ~~~~~~~~~~~~~~~---~~~~~~v~e~~~~~~---l~----------------------------~~~~~~~~~~~ad~ 97 (331)
T PHA01630 52 YYTIFNSMLFWKGIP---HVGKNIVFEVADTDA---IS----------------------------HTALYFFRNQPVDE 97 (331)
T ss_pred ehhhhhHHHHHhhcc---ccCCceEEEEEeech---hh----------------------------HHHHHHHhhccCCE
Confidence 344454567776432 247899999998421 00 0122333 457899
Q ss_pred EEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCC
Q 004879 549 VTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSA 628 (725)
Q Consensus 549 VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~ 628 (725)
|+++|+..++.+..... ..+.++.+||||||.+.|.|... .
T Consensus 98 ii~~S~~~~~~l~~~g~---------~~~~~i~vIpNGVd~~~f~~~~~-----------------~------------- 138 (331)
T PHA01630 98 IVVPSQWSKNAFYTSGL---------KIPQPIYVIPHNLNPRMFEYKPK-----------------E------------- 138 (331)
T ss_pred EEECCHHHHHHHHHcCC---------CCCCCEEEECCCCCHHHcCCCcc-----------------c-------------
Confidence 99999999888765211 11358999999999988876410 0
Q ss_pred CCCCCEEEEeecCcCCCCHHHHHHHHHHhhc--CCcEEEEEcCCCccc----cc--------H--HHHHHhcCeEEEcCC
Q 004879 629 DARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVPH----IQ--------V--YPILLSSFSFLRKHI 692 (725)
Q Consensus 629 d~~~plV~fVGRL~~qKGvdlLieA~~~L~~--~~iqLVIvG~Gp~~~----le--------~--~~iyAaADIfVlPS~ 692 (725)
..+..+++++||+.++||++.+++|++.+.+ .+++|+++|+++... +. . ..+|++||+||+||+
T Consensus 139 ~~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~~~~~~l~~~~~~~~~v~~~~l~~~y~~aDv~v~pS~ 218 (331)
T PHA01630 139 KPHPCVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSSNMLDPRLFGLNGVKTPLPDDDIYSLFAGCDILFYPVR 218 (331)
T ss_pred cCCCEEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEeCcccchhhccccceeccCCHHHHHHHHHhCCEEEECCc
Confidence 0123567788899999999999999999875 478999999875331 11 1 179999999999999
Q ss_pred cccchHHHHHHcCCCcccc-CCCCCc
Q 004879 693 FNICNLYIKLGQGGDLTVN-NNCEPW 717 (725)
Q Consensus 693 ~EpfGLv~LEAMg~~~~V~-~~~~G~ 717 (725)
+|+||++++|||+++.||+ ++++|+
T Consensus 219 ~E~fgl~~lEAMA~G~PVIas~~gg~ 244 (331)
T PHA01630 219 GGAFEIPVIEALALGLDVVVTEKGAW 244 (331)
T ss_pred cccCChHHHHHHHcCCCEEEeCCCCc
Confidence 9999999999996665533 344443
No 66
>PHA01633 putative glycosyl transferase group 1
Probab=99.75 E-value=4.8e-17 Score=176.58 Aligned_cols=145 Identities=10% Similarity=0.065 Sum_probs=106.5
Q ss_pred hhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHH
Q 004879 542 AIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRK 621 (725)
Q Consensus 542 ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk 621 (725)
.+.+.+.+|++|+..++.+... |+ + .. ..|+||||.+.|.|..+ ....+++
T Consensus 89 ~m~~~~~vIavS~~t~~~L~~~----G~------~-~~-i~I~~GVD~~~f~p~~~-----------------~~~~~r~ 139 (335)
T PHA01633 89 YLLQDVKFIPNSKFSAENLQEV----GL------Q-VD-LPVFHGINFKIVENAEK-----------------LVPQLKQ 139 (335)
T ss_pred HHhcCCEEEeCCHHHHHHHHHh----CC------C-Cc-eeeeCCCChhhcCccch-----------------hhHHHHH
Confidence 3445578999999999888752 22 1 12 35889999999887521 1235666
Q ss_pred HcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhcC------CcEEEEEcCCCccc--------cc-------H---
Q 004879 622 HLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL------GGQFILLGSSPVPH--------IQ-------V--- 677 (725)
Q Consensus 622 ~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~~------~iqLVIvG~Gp~~~--------le-------~--- 677 (725)
+++... ++.++++++||+.++||++.+++|+.++.+. +++++++|.+.... +. .
T Consensus 140 ~~~~~~--~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~~~~~~l~l~~~V~f~g~~G~~~~~dl 217 (335)
T PHA01633 140 KLDKDF--PDTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISHKQFTQLEVPANVHFVAEFGHNSREYI 217 (335)
T ss_pred HhCcCC--CCCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcHHHHHHcCCCCcEEEEecCCCCCHHHH
Confidence 776542 2568999999999999999999999998742 35888888642111 11 1
Q ss_pred HHHHHhcCeEEEcCCcccchHHHHHHcCCCcccc-CCCCCc
Q 004879 678 YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVN-NNCEPW 717 (725)
Q Consensus 678 ~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V~-~~~~G~ 717 (725)
..+|++||+||+||.+|+||++++|||+++.||+ .+++|+
T Consensus 218 ~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l 258 (335)
T PHA01633 218 FAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPL 258 (335)
T ss_pred HHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCc
Confidence 1899999999999999999999999998777754 555544
No 67
>PLN02949 transferase, transferring glycosyl groups
Probab=99.75 E-value=3.8e-16 Score=176.66 Aligned_cols=140 Identities=12% Similarity=0.065 Sum_probs=103.3
Q ss_pred hhhhhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHH
Q 004879 539 LKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKES 618 (725)
Q Consensus 539 ~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~a 618 (725)
++.....||.|+++|+..++.+.. .++ ...++.+|+||+|...+.+..
T Consensus 214 ~~~~~~~ad~ii~nS~~t~~~l~~-~~~---------~~~~i~vvyp~vd~~~~~~~~---------------------- 261 (463)
T PLN02949 214 YGLVGRCAHLAMVNSSWTKSHIEA-LWR---------IPERIKRVYPPCDTSGLQALP---------------------- 261 (463)
T ss_pred HHHHcCCCCEEEECCHHHHHHHHH-HcC---------CCCCeEEEcCCCCHHHcccCC----------------------
Confidence 455568899999999998887765 221 134788999999976553210
Q ss_pred HHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhc------CCcEEEEEcCCCcc-------cccH--------
Q 004879 619 IRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE------LGGQFILLGSSPVP-------HIQV-------- 677 (725)
Q Consensus 619 LRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~------~~iqLVIvG~Gp~~-------~le~-------- 677 (725)
... ..+.+.++++||+.++||++++++|++++.+ .+++|+|+|+|+.+ .+++
T Consensus 262 ------~~~-~~~~~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~ 334 (463)
T PLN02949 262 ------LER-SEDPPYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLD 334 (463)
T ss_pred ------ccc-cCCCCEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCC
Confidence 000 1245789999999999999999999998753 37899999997421 1111
Q ss_pred --------------HHHHHhcCeEEEcCCcccchHHHHHHcCCCcc-ccCCCCCc
Q 004879 678 --------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLT-VNNNCEPW 717 (725)
Q Consensus 678 --------------~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~-V~~~~~G~ 717 (725)
..+|+.||++++||.+|+||++++|||+++.| |.++++|-
T Consensus 335 ~~V~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp 389 (463)
T PLN02949 335 GDVEFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGP 389 (463)
T ss_pred CcEEEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCC
Confidence 07999999999999999999999999977654 34455553
No 68
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.73 E-value=5.1e-17 Score=185.34 Aligned_cols=199 Identities=12% Similarity=0.053 Sum_probs=130.6
Q ss_pred CCCceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhh
Q 004879 459 GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINP 538 (725)
Q Consensus 459 ~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~ 538 (725)
..++||+|++...... +.++.. ..++|+++++|+-.+....... .. .+ +......
T Consensus 209 ~~~~di~i~dr~~~~~--~~~~~~-----~~~~~~v~~lH~~h~~~~~~~~---------~~-----~~----~~~~y~~ 263 (500)
T TIGR02918 209 LTKKDIIILDRSTGIG--QAVLEN-----KGPAKLGVVVHAEHFSESATNE---------TY-----IL----WNNYYEY 263 (500)
T ss_pred CCCCCEEEEcCCcccc--hHHHhc-----CCCceEEEEEChhhhcCccCcc---------hh-----HH----HHHHHHH
Confidence 4589999998644222 122221 2479999999985432211000 00 00 0000111
Q ss_pred hhhhhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHH
Q 004879 539 LKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKES 618 (725)
Q Consensus 539 ~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~a 618 (725)
.......+|.+|++|+..++.+...+...+ ....++.+||||++...+.|..
T Consensus 264 ~~~~~~~~D~iI~~S~~~~~~l~~~~~~~~------~~~~ki~viP~g~~~~~~~~~~---------------------- 315 (500)
T TIGR02918 264 QFSNADYIDFFITATDIQNQILKNQFKKYY------NIEPRIYTIPVGSLDELQYPEQ---------------------- 315 (500)
T ss_pred HHhchhhCCEEEECCHHHHHHHHHHhhhhc------CCCCcEEEEcCCCcccccCccc----------------------
Confidence 112356689999999988887765221111 1246899999998754333210
Q ss_pred HHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhc--CCcEEEEEcCCCccc-ccH------------------
Q 004879 619 IRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVPH-IQV------------------ 677 (725)
Q Consensus 619 LRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~--~~iqLVIvG~Gp~~~-le~------------------ 677 (725)
......|+|+||+.++||++.+++|+..+.+ ++++|+|+|+|+... +++
T Consensus 316 ----------~r~~~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~~~~~l~~~i~~~~l~~~V~f~G~~~ 385 (500)
T TIGR02918 316 ----------ERKPFSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEGGEKQKLQKIINENQAQDYIHLKGHRN 385 (500)
T ss_pred ----------ccCCeEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECchhHHHHHHHHHHcCCCCeEEEcCCCC
Confidence 0123579999999999999999999998875 489999999998642 211
Q ss_pred -HHHHHhcCeEEEcCCcccchHHHHHHcCCCccc-------------cCCCCCceee
Q 004879 678 -YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTV-------------NNNCEPWLHH 720 (725)
Q Consensus 678 -~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V-------------~~~~~G~l~~ 720 (725)
..+|+.||++|+||.+|+||+|++|||+++.|| .+|.+||+++
T Consensus 386 ~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~G~~eiI~~g~nG~lv~ 442 (500)
T TIGR02918 386 LSEVYKDYELYLSASTSEGFGLTLMEAVGSGLGMIGFDVNYGNPTFIEDNKNGYLIP 442 (500)
T ss_pred HHHHHHhCCEEEEcCccccccHHHHHHHHhCCCEEEecCCCCCHHHccCCCCEEEEe
Confidence 189999999999999999999999999555443 3456677765
No 69
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.71 E-value=5.6e-16 Score=167.55 Aligned_cols=258 Identities=14% Similarity=0.011 Sum_probs=158.0
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeee
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 412 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v 412 (725)
|||++++.+ .||...+...|+++|.++||+|+|+++..+... .. + ..
T Consensus 2 ~~i~i~~~g------~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~-~~---~-----------------------~~ 48 (357)
T PRK00726 2 KKILLAGGG------TGGHVFPALALAEELKKRGWEVLYLGTARGMEA-RL---V-----------------------PK 48 (357)
T ss_pred cEEEEEcCc------chHhhhHHHHHHHHHHhCCCEEEEEECCCchhh-hc---c-----------------------cc
Confidence 899998763 578888888999999999999999987542110 00 0 01
Q ss_pred CCeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCc
Q 004879 413 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSAR 492 (725)
Q Consensus 413 ~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ip 492 (725)
.|++++.++... .. +....+.-.....+......+.++++ ..+|||||+|+|.+++.+. +... ..++|
T Consensus 49 ~g~~~~~~~~~~---~~-~~~~~~~l~~~~~~~~~~~~~~~~ik--~~~pDvv~~~~~~~~~~~~-~~~~-----~~~~p 116 (357)
T PRK00726 49 AGIEFHFIPSGG---LR-RKGSLANLKAPFKLLKGVLQARKILK--RFKPDVVVGFGGYVSGPGG-LAAR-----LLGIP 116 (357)
T ss_pred CCCcEEEEeccC---cC-CCChHHHHHHHHHHHHHHHHHHHHHH--hcCCCEEEECCCcchhHHH-HHHH-----HcCCC
Confidence 355555554210 00 00000000000111111122333444 3589999999987765432 2222 24789
Q ss_pred EEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccc
Q 004879 493 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHST 572 (725)
Q Consensus 493 iV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~ 572 (725)
+|++.|+.. +. . ..+..+..+|.++++++....+
T Consensus 117 ~v~~~~~~~-----~~-~---------------------------~~r~~~~~~d~ii~~~~~~~~~------------- 150 (357)
T PRK00726 117 LVIHEQNAV-----PG-L---------------------------ANKLLARFAKKVATAFPGAFPE------------- 150 (357)
T ss_pred EEEEcCCCC-----cc-H---------------------------HHHHHHHHhchheECchhhhhc-------------
Confidence 998877531 00 0 1133456789999888733111
Q ss_pred cccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHH-
Q 004879 573 LNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIR- 651 (725)
Q Consensus 573 l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLi- 651 (725)
.+..++++||||+|.+.|.+.. .+++++++ ++.++++++|+..+.|++..++
T Consensus 151 --~~~~~i~vi~n~v~~~~~~~~~----------------------~~~~~~~~---~~~~~i~~~gg~~~~~~~~~~l~ 203 (357)
T PRK00726 151 --FFKPKAVVTGNPVREEILALAA----------------------PPARLAGR---EGKPTLLVVGGSQGARVLNEAVP 203 (357)
T ss_pred --cCCCCEEEECCCCChHhhcccc----------------------hhhhccCC---CCCeEEEEECCcHhHHHHHHHHH
Confidence 1357899999999987655421 12345655 2567889999999888875555
Q ss_pred HHHHHhhcCCcEEEEEcCCCccccc---------------H--HHHHHhcCeEEEcCCcccchHHHHHHcCCCccccC
Q 004879 652 HAIYRTLELGGQFILLGSSPVPHIQ---------------V--YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNN 712 (725)
Q Consensus 652 eA~~~L~~~~iqLVIvG~Gp~~~le---------------~--~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V~~ 712 (725)
+|+.++.+....++++|+|+.+.+. . ..+|++||+++++|- +.+.+|||+++.||+.
T Consensus 204 ~a~~~~~~~~~~~~~~G~g~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~i~~~g----~~~~~Ea~~~g~Pvv~ 277 (357)
T PRK00726 204 EALALLPEALQVIHQTGKGDLEEVRAAYAAGINAEVVPFIDDMAAAYAAADLVICRAG----ASTVAELAAAGLPAIL 277 (357)
T ss_pred HHHHHhhhCcEEEEEcCCCcHHHHHHHhhcCCcEEEeehHhhHHHHHHhCCEEEECCC----HHHHHHHHHhCCCEEE
Confidence 9998876433456788998754211 1 189999999999883 6899999977777553
No 70
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.69 E-value=3.7e-16 Score=177.06 Aligned_cols=281 Identities=22% Similarity=0.309 Sum_probs=141.9
Q ss_pred EcCccCCCCCCCcHHHHHHHHHHHHHH-CCCeEEEEeeCCCCCcccccccccccceeeee-----ccCCcceeeeeEeee
Q 004879 338 IAAEMAPVAKVGGLGDVVAGLGKALQK-KGHLVEIVLPKYDCMQYDRIDDLRALDVVVES-----YFDGRLFKNKVWVST 411 (725)
Q Consensus 338 Is~E~~P~~kvGGlg~vV~~LaraL~~-~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~-----~f~g~~~~~rV~~~~ 411 (725)
+++|.+- |+||+-+|+..=|+.+++ .|.++.+|.|........+++.+...+..+.. .-.| +++++-+..
T Consensus 2 ~sWEVcN--KVGGIYTVi~tKA~~~~~e~gd~y~lIGP~~~~~~~~e~e~~e~~~~~l~~~~~~~~~~G--l~v~~GRWl 77 (633)
T PF05693_consen 2 VSWEVCN--KVGGIYTVISTKAPTMVEEFGDNYILIGPYNEQNARTEVEEIEPDNPLLKDALESMREEG--LKVRYGRWL 77 (633)
T ss_dssp EETTTTS---SSSHHHHHHHHHHHHHHHHGGGEEEEEE--TTTHHHHEEE--SSSGGHHHHHHHHHHTT---EEEEEEES
T ss_pred chhhhcc--ccCCeehhhhccHHHHHHHHCCeEEEECCCCCcccCCCCCcCCCCCHHHHHHHHHHHhCC--CeEEEecee
Confidence 5677765 799999999999998885 69999999998654321111111110000000 0011 233444446
Q ss_pred eCCeeE-EEeCCCCCCccccc-CCC-------CCC-----CchhhhHHHHHHHHHHHHHH---c-C-CCceEEEECCCch
Q 004879 412 IEGLPV-YFIEPHHPDKFFWR-GQF-------YGE-----HDDFRRFSFFSRAALELLLQ---A-G-KQPDIIHCHDWQT 472 (725)
Q Consensus 412 v~GI~V-~~I~~~~ps~~F~r-~~~-------Yg~-----~dd~~r~~~FsravlelL~~---~-~-~kPDIIH~Hdw~s 472 (725)
++|.|. .+++.. .+++. ..+ |+. ..+..-...|+-++..++.. . . ...=|.|+|.|++
T Consensus 78 I~G~P~vIL~D~~---s~~~~ldeik~~lW~~~gIdS~~~~~dynea~~Fgyava~fi~~f~~~~~~~~~ViaHfHEWma 154 (633)
T PF05693_consen 78 IPGRPIVILFDFG---SFFWKLDEIKGELWELFGIDSPHGDGDYNEAVMFGYAVAWFIEEFYKFYEEKPKVIAHFHEWMA 154 (633)
T ss_dssp STT--EEEEEEGG---GGGGGHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHHHHHHHHHHH-S-SEEEEEEEESGGG
T ss_pred ECCcCeEEEEeCc---hHHHHHHHHHHHHHHHcCCCCCCCCcchhHHHHHHHHHHHHHHHHHHhhcCCCcEEEEechHhH
Confidence 788774 444431 12221 111 110 01222244566555554443 2 2 3445889999999
Q ss_pred hhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccc------cccccccchhhhhhhhhhc
Q 004879 473 AFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRM------QDNSAHDRINPLKGAIVFS 546 (725)
Q Consensus 473 a~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l------~d~~~~~~in~~k~ai~~A 546 (725)
++ +.++.+.. ...+.+|||.|..-. |. .+..-+.+ .+.++..+ .....+.+..+++.+..+|
T Consensus 155 G~-gll~lr~~----~~~VaTvFTTHAT~l-GR----~l~~~~~~--~Y~~L~~~~~d~eA~~~~i~~k~~iEraaA~~A 222 (633)
T PF05693_consen 155 GV-GLLYLRKR----KPDVATVFTTHATLL-GR----YLAANNKD--FYNNLDKFNGDQEAGERNIYHKHSIERAAAHYA 222 (633)
T ss_dssp TT-HHHHHHHT----T-SCEEEEEESS-HH-HH----HHTTTSS---TTTSGTTS-HHHHHHHTT-HHHHHHHHHHHHHS
T ss_pred hH-HHHHHhcc----CCCeeEEEEecccch-hh----HhhcCCCc--HHHHhhccCccccccCccchHHHHHHHHHHHhc
Confidence 97 45665542 257899999998731 10 01000111 11111100 0011345677889999999
Q ss_pred cEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHH----HHHH
Q 004879 547 NIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKES----IRKH 622 (725)
Q Consensus 547 D~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~a----LRk~ 622 (725)
|+++|||...+.+... .++ +.+=.|+|||++.+.|.... .+- + -+..+|+. ++.+
T Consensus 223 dvFTTVSeITa~Ea~~-LL~----------r~pDvV~pNGl~v~~~~~~~-efq-------n--l~~~~k~ki~~fv~~~ 281 (633)
T PF05693_consen 223 DVFTTVSEITAKEAEH-LLK----------RKPDVVTPNGLNVDKFPALH-EFQ-------N--LHAKAKEKIHEFVRGH 281 (633)
T ss_dssp SEEEESSHHHHHHHHH-HHS----------S--SEE----B-GGGTSSTT-HHH-------H--HHHHHHHHHHHHHHHH
T ss_pred CeeeehhhhHHHHHHH-HhC----------CCCCEEcCCCccccccccch-HHH-------H--HHHHHHHHHHHHHHHH
Confidence 9999999999988754 221 22336889999988664321 100 0 01223333 3444
Q ss_pred c-CCCCCCCCCC-EEEEeecCc-CCCCHHHHHHHHHHhh
Q 004879 623 L-GLSSADARKP-LVGCITRLV-PQKGVHLIRHAIYRTL 658 (725)
Q Consensus 623 l-GL~~~d~~~p-lV~fVGRL~-~qKGvdlLieA~~~L~ 658 (725)
+ |--+.++++. +|...||.. ..||+|.+|+|+.++.
T Consensus 282 f~g~~dfd~d~tl~~ftsGRYEf~NKG~D~fieAL~rLn 320 (633)
T PF05693_consen 282 FYGHYDFDLDKTLYFFTSGRYEFRNKGIDVFIEALARLN 320 (633)
T ss_dssp STT---S-GGGEEEEEEESSS-TTTTTHHHHHHHHHHHH
T ss_pred hcccCCCCccceEEEEeeeceeeecCCccHHHHHHHHHH
Confidence 3 3111123444 466689998 6999999999999885
No 71
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.69 E-value=2.8e-16 Score=177.61 Aligned_cols=221 Identities=18% Similarity=0.148 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCC
Q 004879 444 FSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNR 523 (725)
Q Consensus 444 ~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~ 523 (725)
|.-+++..++.+...-...|+||+||+|..+++ .++... ..+.|+++.+|-. +|...+..| +|.
T Consensus 114 Y~~vN~~fa~~i~~~~~~~d~iwihDyhl~llp-~~lr~~----~~~~~i~~f~Hip-----fP~~e~~~~-lp~----- 177 (460)
T cd03788 114 YVRVNRKFADAIAEVLRPGDLVWVHDYHLLLLP-QMLRER----GPDARIGFFLHIP-----FPSSEIFRC-LPW----- 177 (460)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeChhhhHHH-HHHHhh----CCCCeEEEEEeCC-----CCChHHHhh-CCC-----
Confidence 333444444444433346799999999988874 444321 3478999999964 232222111 111
Q ss_pred cccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhcc-CCCcccc------cccCCCcEEEEeCCccCCCCCCCC
Q 004879 524 PDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEG-GQGLHST------LNFHSKKFVGILNGIDTDAWNPAT 596 (725)
Q Consensus 524 ~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~-g~GL~~~------l~~~~~Kv~vIpNGID~~~f~P~~ 596 (725)
+ ..+-.++-.||.|.+-++.+++.....-- -.|+... ......++.+||||||.+.|.|..
T Consensus 178 -----------~-~~ll~~~l~~D~igF~t~~~~~~Fl~~~~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~ 245 (460)
T cd03788 178 -----------R-EELLRGLLGADLIGFQTERYARNFLSCCSRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLA 245 (460)
T ss_pred -----------h-HHHHHHHhcCCEEEECCHHHHHHHHHHHHHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHh
Confidence 0 11223455678888888776655433110 0011100 112345789999999998887632
Q ss_pred cchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhcC--C----cEEEEEcCC
Q 004879 597 DTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL--G----GQFILLGSS 670 (725)
Q Consensus 597 d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~~--~----iqLVIvG~G 670 (725)
. ....+..+++..+.. +++++|+++||+.+.||++.+++|+..+++. + ++|+++|.+
T Consensus 246 ~--------------~~~~~~~~~~~~~~~---~~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~ 308 (460)
T cd03788 246 A--------------SPEVQERAAELRERL---GGRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVP 308 (460)
T ss_pred c--------------CchhHHHHHHHHHhc---CCCEEEEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEEccC
Confidence 1 011233344444444 2678999999999999999999999988753 2 578888653
Q ss_pred C-----cc-cc------------------------------cH---HHHHHhcCeEEEcCCcccchHHHHHHcCCCcc
Q 004879 671 P-----VP-HI------------------------------QV---YPILLSSFSFLRKHIFNICNLYIKLGQGGDLT 709 (725)
Q Consensus 671 p-----~~-~l------------------------------e~---~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~ 709 (725)
+ .. .+ .. ..+|++||+||+||..|+||+|++|||+++.+
T Consensus 309 ~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p 386 (460)
T cd03788 309 SRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYVACQDD 386 (460)
T ss_pred CCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHhccEEEeCccccccCcccceeEEEecC
Confidence 2 11 00 00 18999999999999999999999999987765
No 72
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.68 E-value=2e-15 Score=161.66 Aligned_cols=254 Identities=17% Similarity=0.080 Sum_probs=147.0
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeee
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 412 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v 412 (725)
|||++++.+ +||--.....|+++|.++||+|+|+++.++... .+ . ..
T Consensus 1 ~~i~~~~g~------~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~-----~~--------------------~--~~ 47 (348)
T TIGR01133 1 KKVVLAAGG------TGGHIFPALAVAEELIKRGVEVLWLGTKRGLEK-----RL--------------------V--PK 47 (348)
T ss_pred CeEEEEeCc------cHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchh-----cc--------------------c--cc
Confidence 688887643 233333445899999999999999986432110 00 0 01
Q ss_pred CCeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCc
Q 004879 413 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSAR 492 (725)
Q Consensus 413 ~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ip 492 (725)
.|++++.++... +. +............+......+.++++ ..+|||||+|.+.+++.+.+ ... +.++|
T Consensus 48 ~g~~~~~i~~~~---~~-~~~~~~~l~~~~~~~~~~~~l~~~i~--~~~pDvVi~~~~~~~~~~~~-~~~-----~~~~p 115 (348)
T TIGR01133 48 AGIEFYFIPVGG---LR-RKGSFRLIKTPLKLLKAVFQARRILK--KFKPDAVIGFGGYVSGPAGL-AAK-----LLGIP 115 (348)
T ss_pred CCCceEEEeccC---cC-CCChHHHHHHHHHHHHHHHHHHHHHH--hcCCCEEEEcCCcccHHHHH-HHH-----HcCCC
Confidence 355555554210 10 00010000000111111223334454 36899999998766554222 221 24678
Q ss_pred EEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccc
Q 004879 493 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHST 572 (725)
Q Consensus 493 iV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~ 572 (725)
+|++.|+.. +. . ..+...+++|.++++|+...+.+
T Consensus 116 ~v~~~~~~~-----~~--------------------------~--~~~~~~~~~d~ii~~~~~~~~~~------------ 150 (348)
T TIGR01133 116 LFHHEQNAV-----PG--------------------------L--TNKLLSRFAKKVLISFPGAKDHF------------ 150 (348)
T ss_pred EEEECCCCC-----cc--------------------------H--HHHHHHHHhCeeEECchhHhhcC------------
Confidence 875443221 00 0 11334567899999998654321
Q ss_pred cccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHH-HHH
Q 004879 573 LNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVH-LIR 651 (725)
Q Consensus 573 l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvd-lLi 651 (725)
+..+|+||+|...+.+.. .++.+|+++ +.++|+++||....|++. .++
T Consensus 151 ------~~~~i~n~v~~~~~~~~~----------------------~~~~~~~~~---~~~~i~~~gg~~~~~~~~~~l~ 199 (348)
T TIGR01133 151 ------EAVLVGNPVRQEIRSLPV----------------------PRERFGLRE---GKPTILVLGGSQGAKILNELVP 199 (348)
T ss_pred ------CceEEcCCcCHHHhcccc----------------------hhhhcCCCC---CCeEEEEECCchhHHHHHHHHH
Confidence 236899999976554321 123567763 568899999988889865 456
Q ss_pred HHHHHhhcCCcEEEE-EcCCCcccccH------------------HHHHHhcCeEEEcCCcccchHHHHHHcCCCcccc
Q 004879 652 HAIYRTLELGGQFIL-LGSSPVPHIQV------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVN 711 (725)
Q Consensus 652 eA~~~L~~~~iqLVI-vG~Gp~~~le~------------------~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V~ 711 (725)
+|+..+.+.+.++++ +|+++...+++ ..+|++||++|.+|- |++.+|||.++.||+
T Consensus 200 ~a~~~l~~~~~~~~~~~g~~~~~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~~v~~~g----~~~l~Ea~~~g~Pvv 274 (348)
T TIGR01133 200 KALAKLAEKGIQIVHQTGKNDLEKVKNVYQELGIEAIVTFIDENMAAAYAAADLVISRAG----ASTVAELAAAGVPAI 274 (348)
T ss_pred HHHHHHhhcCcEEEEECCcchHHHHHHHHhhCCceEEecCcccCHHHHHHhCCEEEECCC----hhHHHHHHHcCCCEE
Confidence 888887655677754 45554322211 189999999999862 789999997766643
No 73
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.67 E-value=4e-15 Score=159.41 Aligned_cols=256 Identities=14% Similarity=0.045 Sum_probs=154.4
Q ss_pred eEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeC
Q 004879 334 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 413 (725)
Q Consensus 334 kILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~ 413 (725)
+|++.+. .+||-..++..|+++|.++||+|+|+++...... . . . ...
T Consensus 1 ~~~~~~~------~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~-~----~--~--------------------~~~ 47 (350)
T cd03785 1 RILIAGG------GTGGHIFPALALAEELRERGAEVLFLGTKRGLEA-R----L--V--------------------PKA 47 (350)
T ss_pred CEEEEec------CchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh-h----c--c--------------------ccc
Confidence 3555554 3578888888999999999999999987643110 0 0 0 012
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcE
Q 004879 414 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 493 (725)
Q Consensus 414 GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipi 493 (725)
|++++.++... +.+...+.....+..+......+..+++ ..+|||||+|.+..++.+ .+... ..++|+
T Consensus 48 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~pDvI~~~~~~~~~~~-~~~a~-----~~~~p~ 115 (350)
T cd03785 48 GIPLHTIPVGG----LRRKGSLKKLKAPFKLLKGVLQARKILK--KFKPDVVVGFGGYVSGPV-GLAAK-----LLGIPL 115 (350)
T ss_pred CCceEEEEecC----cCCCChHHHHHHHHHHHHHHHHHHHHHH--hcCCCEEEECCCCcchHH-HHHHH-----HhCCCE
Confidence 45555553210 1000000000001111111223334444 368999999987665432 22222 247899
Q ss_pred EEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCccccc
Q 004879 494 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTL 573 (725)
Q Consensus 494 V~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l 573 (725)
|++.|+.. + .. ..+..+..+|.|+++|+...+. .
T Consensus 116 v~~~~~~~-----~-~~---------------------------~~~~~~~~~~~vi~~s~~~~~~-----~-------- 149 (350)
T cd03785 116 VIHEQNAV-----P-GL---------------------------ANRLLARFADRVALSFPETAKY-----F-------- 149 (350)
T ss_pred EEEcCCCC-----c-cH---------------------------HHHHHHHhhCEEEEcchhhhhc-----C--------
Confidence 87665421 1 00 0123345689999999866543 1
Q ss_pred ccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHH-HHHH
Q 004879 574 NFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVH-LIRH 652 (725)
Q Consensus 574 ~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvd-lLie 652 (725)
...++.+|+||+|.+.+.+. . . ++.+++++ +.++|+++|+....|+.. ++++
T Consensus 150 --~~~~~~~i~n~v~~~~~~~~-------------------~--~-~~~~~~~~---~~~~i~~~~g~~~~~~~~~~l~~ 202 (350)
T cd03785 150 --PKDKAVVTGNPVREEILALD-------------------R--E-RARLGLRP---GKPTLLVFGGSQGARAINEAVPE 202 (350)
T ss_pred --CCCcEEEECCCCchHHhhhh-------------------h--h-HHhcCCCC---CCeEEEEECCcHhHHHHHHHHHH
Confidence 24688999999998766542 0 1 66777763 567888888877778775 4568
Q ss_pred HHHHhhcCCcEE-EEEcCCCcccccH------------------HHHHHhcCeEEEcCCcccchHHHHHHcCCCcccc
Q 004879 653 AIYRTLELGGQF-ILLGSSPVPHIQV------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVN 711 (725)
Q Consensus 653 A~~~L~~~~iqL-VIvG~Gp~~~le~------------------~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V~ 711 (725)
|+..+.+.+.++ +++|.|....+++ ..+|+.||++|++|- |++.+|||+++.||+
T Consensus 203 a~~~l~~~~~~~~~i~G~g~~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~v~~sg----~~t~~Eam~~G~Pvv 276 (350)
T cd03785 203 ALAELLRKRLQVIHQTGKGDLEEVKKAYEELGVNYEVFPFIDDMAAAYAAADLVISRAG----ASTVAELAALGLPAI 276 (350)
T ss_pred HHHHhhccCeEEEEEcCCccHHHHHHHHhccCCCeEEeehhhhHHHHHHhcCEEEECCC----HhHHHHHHHhCCCEE
Confidence 888776556665 4678874322211 179999999999873 689999997776654
No 74
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.66 E-value=2.1e-15 Score=167.39 Aligned_cols=139 Identities=13% Similarity=0.011 Sum_probs=104.1
Q ss_pred hhhhhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHH
Q 004879 539 LKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKES 618 (725)
Q Consensus 539 ~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~a 618 (725)
.+..+..+|.|+++|+..++.+... ++ ....++.+++||+|...+.+..
T Consensus 177 ~~~~~~~~d~ii~~S~~~~~~l~~~-~~--------~~~~ki~vi~~gv~~~~~~~~~---------------------- 225 (407)
T cd04946 177 RRYLLSSLDAVFPCSEQGRNYLQKR-YP--------AYKEKIKVSYLGVSDPGIISKP---------------------- 225 (407)
T ss_pred HHHHHhcCCEEEECCHHHHHHHHHH-CC--------CccccEEEEECCcccccccCCC----------------------
Confidence 3455778999999999988887653 22 2457889999999986554320
Q ss_pred HHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhcC----CcEEEEEcCCCccc-ccH----------------
Q 004879 619 IRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL----GGQFILLGSSPVPH-IQV---------------- 677 (725)
Q Consensus 619 LRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~~----~iqLVIvG~Gp~~~-le~---------------- 677 (725)
. ..+.+.++++||+.+.||++.+++|+..+.+. +++++++|+|+... ++.
T Consensus 226 ------~---~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~~~~~l~~~~~~~~~~~~V~f~G~ 296 (407)
T cd04946 226 ------S---KDDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGGPLEDTLKELAESKPENISVNFTGE 296 (407)
T ss_pred ------C---CCCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCchHHHHHHHHHHhcCCCceEEEecC
Confidence 0 12457899999999999999999999998753 56788899987531 110
Q ss_pred ----H--HHHHh--cCeEEEcCCcccchHHHHHHcCCCcccc-CCCCCc
Q 004879 678 ----Y--PILLS--SFSFLRKHIFNICNLYIKLGQGGDLTVN-NNCEPW 717 (725)
Q Consensus 678 ----~--~iyAa--ADIfVlPS~~EpfGLv~LEAMg~~~~V~-~~~~G~ 717 (725)
+ .+|+. +|++++||.+|++|++++|||+++.||+ ++++|.
T Consensus 297 v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg~ 345 (407)
T cd04946 297 LSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGGT 345 (407)
T ss_pred CChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCCc
Confidence 1 67764 7899999999999999999997776654 445544
No 75
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.63 E-value=4.3e-15 Score=160.54 Aligned_cols=186 Identities=12% Similarity=0.072 Sum_probs=126.3
Q ss_pred CCceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhh
Q 004879 460 KQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPL 539 (725)
Q Consensus 460 ~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~ 539 (725)
.++||+++|....... +++ .. ....|.|.++|+......... . ... +.......
T Consensus 98 ~~~diii~~~~~~~~~-~~~-~~-----~~~~~~i~~~h~~~~~~~~~~--~---~~~--------------~~~~~~~~ 151 (372)
T cd04949 98 TKPDVFILDRPTLDGQ-ALL-NM-----KKAAKVVVVLHSNHVSDNNDP--V---HSL--------------INNFYEYV 151 (372)
T ss_pred CCCCEEEECCccccch-hHH-hc-----cCCceEEEEEChHHhCCcccc--c---ccc--------------cchhhHHH
Confidence 6899999997654432 122 11 135678999997542211000 0 000 00001112
Q ss_pred hhhhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHH
Q 004879 540 KGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESI 619 (725)
Q Consensus 540 k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aL 619 (725)
...+..+|.++++|+..++.+... ++ ...++.+||||++...+.|..
T Consensus 152 ~~~~~~~d~ii~~s~~~~~~l~~~-~~---------~~~~v~~ip~g~~~~~~~~~~----------------------- 198 (372)
T cd04949 152 FENLDKVDGVIVATEQQKQDLQKQ-FG---------NYNPIYTIPVGSIDPLKLPAQ----------------------- 198 (372)
T ss_pred HhChhhCCEEEEccHHHHHHHHHH-hC---------CCCceEEEcccccChhhcccc-----------------------
Confidence 233567899999999888887653 21 133488999999987665421
Q ss_pred HHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhc--CCcEEEEEcCCCccc-ccH-------------------
Q 004879 620 RKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVPH-IQV------------------- 677 (725)
Q Consensus 620 Rk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~--~~iqLVIvG~Gp~~~-le~------------------- 677 (725)
.. ....+.++++||+.++||++.+++|+..+.+ .+++|+|+|.|+... ++.
T Consensus 199 -----~~--~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~ 271 (372)
T cd04949 199 -----FK--QRKPHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYGDEEEKLKELIEELGLEDYVFLKGYTRD 271 (372)
T ss_pred -----hh--hcCCCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHHHcCCcceEEEcCCCCC
Confidence 00 1234689999999999999999999999875 479999999987542 110
Q ss_pred -HHHHHhcCeEEEcCCcccchHHHHHHcCCCcccc
Q 004879 678 -YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVN 711 (725)
Q Consensus 678 -~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V~ 711 (725)
..+|+.||++|+||.+|+||++++|||+++.||+
T Consensus 272 ~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI 306 (372)
T cd04949 272 LDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVI 306 (372)
T ss_pred HHHHHhhhhEEEecccccccChHHHHHHhCCCCEE
Confidence 1799999999999999999999999997766654
No 76
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.63 E-value=4.5e-15 Score=167.68 Aligned_cols=212 Identities=17% Similarity=0.128 Sum_probs=138.3
Q ss_pred CceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhh
Q 004879 461 QPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLK 540 (725)
Q Consensus 461 kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k 540 (725)
.-|+|.+||+|-.++ |.++... ..+.++.|.+|-. +|...+..+ +|. ..-+-
T Consensus 127 ~~d~vwvhDYhl~l~-p~~lr~~----~~~~~igfFlHip-----fP~~e~f~~-lp~-----------------r~~il 178 (456)
T TIGR02400 127 PGDIVWVHDYHLMLL-PAMLREL----GVQNKIGFFLHIP-----FPSSEIYRT-LPW-----------------RRELL 178 (456)
T ss_pred CCCEEEEecchhhHH-HHHHHhh----CCCCeEEEEEeCC-----CCChHHHhh-CCc-----------------HHHHH
Confidence 458999999998888 4554432 2468999999953 333222111 111 01234
Q ss_pred hhhhhccEEEEeCHHHHHHHHhhcc-CCCccc-----ccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhh
Q 004879 541 GAIVFSNIVTTVSPSYAQEVRTSEG-GQGLHS-----TLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAE 614 (725)
Q Consensus 541 ~ai~~AD~VitVS~~~a~ev~~~~~-g~GL~~-----~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~ 614 (725)
.++-.||.|.+-++.+++.....-. -.|++. .......++.++|||||++.|.|.... + . ...
T Consensus 179 ~gll~~dligF~t~~~~~~Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~-------~-~---~~~ 247 (456)
T TIGR02400 179 EGLLAYDLVGFQTYDDARNFLSAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKK-------P-S---VQK 247 (456)
T ss_pred HHHhcCCEEEECCHHHHHHHHHHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcC-------h-h---HHH
Confidence 5677899999999998877644210 001111 111245678899999999988764210 0 0 001
Q ss_pred hHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhcC------CcEEEEEc-----CCCcc-cc-------
Q 004879 615 NKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL------GGQFILLG-----SSPVP-HI------- 675 (725)
Q Consensus 615 ~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~~------~iqLVIvG-----~Gp~~-~l------- 675 (725)
.-..+|+.++ ++++|++|||+++.||+..+++|++++++. ++.|+++| +++.. .+
T Consensus 248 ~~~~lr~~~~------~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~l 321 (456)
T TIGR02400 248 RIAELRESLK------GRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEEL 321 (456)
T ss_pred HHHHHHHHcC------CCeEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEecCCccCchHHHHHHHHHHHH
Confidence 1124666653 458999999999999999999999998742 25677774 22221 00
Q ss_pred -----------------------cHH---HHHHhcCeEEEcCCcccchHHHHHHcCCCcc-----ccCCCCCc
Q 004879 676 -----------------------QVY---PILLSSFSFLRKHIFNICNLYIKLGQGGDLT-----VNNNCEPW 717 (725)
Q Consensus 676 -----------------------e~~---~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~-----V~~~~~G~ 717 (725)
..+ .+|++||+||+||.+|+||+|++|||+++.+ |....+|-
T Consensus 322 v~~in~~~~~~~~~pv~~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~ 394 (456)
T TIGR02400 322 VGRINGRFGTLDWTPIRYLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGA 394 (456)
T ss_pred HHHHHhccCCCCCccEEEEcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCC
Confidence 011 8999999999999999999999999988776 55555553
No 77
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.55 E-value=2.8e-13 Score=133.05 Aligned_cols=82 Identities=17% Similarity=0.152 Sum_probs=66.3
Q ss_pred EeecCcCCCCHHHHHHHHHHhhcC--CcEEEEEcCCCcccc-c---------------------H--HHHHHhcCeEEEc
Q 004879 637 CITRLVPQKGVHLIRHAIYRTLEL--GGQFILLGSSPVPHI-Q---------------------V--YPILLSSFSFLRK 690 (725)
Q Consensus 637 fVGRL~~qKGvdlLieA~~~L~~~--~iqLVIvG~Gp~~~l-e---------------------~--~~iyAaADIfVlP 690 (725)
|+||+.+.||++.+++|+..+.+. +++|+++|.++.... . . ..++++||++++|
T Consensus 109 ~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~ 188 (229)
T cd01635 109 FVGRLAPEKGLDDLIEAFALLKERGPDLKLVIAGDGPEREYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVFVLP 188 (229)
T ss_pred EEEeecccCCHHHHHHHHHHHHHhCCCeEEEEEeCCCChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEEEec
Confidence 899999999999999999998753 899999998764321 0 0 1667779999999
Q ss_pred CCcccchHHHHHHcCCCcccc-CCCCCce
Q 004879 691 HIFNICNLYIKLGQGGDLTVN-NNCEPWL 718 (725)
Q Consensus 691 S~~EpfGLv~LEAMg~~~~V~-~~~~G~l 718 (725)
|..|+||++++|||+++.||+ ++.+|+-
T Consensus 189 ~~~e~~~~~~~Eam~~g~pvi~s~~~~~~ 217 (229)
T cd01635 189 SLREGFGLVVLEAMACGLPVIATDVGGPP 217 (229)
T ss_pred ccccCcChHHHHHHhCCCCEEEcCCCCcc
Confidence 999999999999998877754 4444443
No 78
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.53 E-value=5.4e-13 Score=148.32 Aligned_cols=195 Identities=11% Similarity=0.006 Sum_probs=126.2
Q ss_pred HHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCccccccccc
Q 004879 453 ELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSA 532 (725)
Q Consensus 453 elL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~ 532 (725)
.+++. ++||++|+|.....+ .++... +..++|+|++.|.+... .+.. +
T Consensus 118 ~~l~~--~~Pd~v~~~~~~~~~--~~l~~~----~~~~ip~vl~~~~~~~~------s~~~------------------~ 165 (425)
T PRK05749 118 RFLRF--WRPKLVIIMETELWP--NLIAEL----KRRGIPLVLANARLSER------SFKR------------------Y 165 (425)
T ss_pred HHHHh--hCCCEEEEEecchhH--HHHHHH----HHCCCCEEEEeccCChh------hHHH------------------H
Confidence 34553 689999999533221 122111 12579999886654210 0000 0
Q ss_pred ccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccch
Q 004879 533 HDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGK 612 (725)
Q Consensus 533 ~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK 612 (725)
...-.+.+..+..+|.|+++|+..++.+.. . | .++. +.+++|+ +.+.+.+.. .
T Consensus 166 ~~~~~~~r~~~~~~d~ii~~S~~~~~~l~~--~--g------~~~~-i~vi~n~-~~d~~~~~~---------------~ 218 (425)
T PRK05749 166 QKFKRFYRLLFKNIDLVLAQSEEDAERFLA--L--G------AKNE-VTVTGNL-KFDIEVPPE---------------L 218 (425)
T ss_pred HHHHHHHHHHHHhCCEEEECCHHHHHHHHH--c--C------CCCC-cEecccc-cccCCCChh---------------h
Confidence 001124466677899999999998888764 2 2 1234 7788884 333332210 0
Q ss_pred hhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhc--CCcEEEEEcCCCcc--ccc------------
Q 004879 613 AENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVP--HIQ------------ 676 (725)
Q Consensus 613 ~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~--~~iqLVIvG~Gp~~--~le------------ 676 (725)
...+..+++.++ + +.++++++|+. .|+.+.+++|+..+.+ .+++|+|+|+|+.+ .++
T Consensus 219 ~~~~~~~r~~~~-~----~~~vil~~~~~--~~~~~~ll~A~~~l~~~~~~~~liivG~g~~r~~~l~~~~~~~gl~~~~ 291 (425)
T PRK05749 219 AARAATLRRQLA-P----NRPVWIAASTH--EGEEELVLDAHRALLKQFPNLLLILVPRHPERFKEVEELLKKAGLSYVR 291 (425)
T ss_pred HHHHHHHHHHhc-C----CCcEEEEeCCC--chHHHHHHHHHHHHHHhCCCcEEEEcCCChhhHHHHHHHHHhCCCcEEE
Confidence 112346777777 3 45788888874 6889999999998765 58999999998753 110
Q ss_pred -------------------H--HHHHHhcCeEEE-cCCcccchHHHHHHcCCCccccCC
Q 004879 677 -------------------V--YPILLSSFSFLR-KHIFNICNLYIKLGQGGDLTVNNN 713 (725)
Q Consensus 677 -------------------~--~~iyAaADIfVl-PS~~EpfGLv~LEAMg~~~~V~~~ 713 (725)
. ..+|+.||++++ ||..|++|.+++|||+++.||+.+
T Consensus 292 ~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g 350 (425)
T PRK05749 292 RSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVISG 350 (425)
T ss_pred ccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEEC
Confidence 0 189999999655 788899999999999888888754
No 79
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.51 E-value=1.9e-12 Score=141.63 Aligned_cols=270 Identities=13% Similarity=0.073 Sum_probs=155.7
Q ss_pred CCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcc-eeeeeEe
Q 004879 331 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRL-FKNKVWV 409 (725)
Q Consensus 331 ~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~-~~~rV~~ 409 (725)
+.|||++++..+ .||-...+..|+++|.++||+|.++++.+..... . ++.+.. ..| .... +.-.+|.
T Consensus 3 ~~~rili~t~~~-----G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~~~-~---~~~~~~--~~y-~~~~~~~~~~~~ 70 (380)
T PRK13609 3 KNPKVLILTAHY-----GNGHVQVAKTLEQTFRQKGIKDVIVCDLFGESHP-V---ITEITK--YLY-LKSYTIGKELYR 70 (380)
T ss_pred CCCeEEEEEcCC-----CchHHHHHHHHHHHHHhcCCCcEEEEEhHHhcch-H---HHHHHH--HHH-HHHHHHhHHHHH
Confidence 357999999864 4699999999999999999998888887653321 0 110000 000 0000 0000000
Q ss_pred eeeCCeeEEEeCCCCCCcccccCCCCCCCchhhh-HHHH-HHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCC
Q 004879 410 STIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRR-FSFF-SRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKG 487 (725)
Q Consensus 410 ~~v~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r-~~~F-sravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~g 487 (725)
...... ...++. ...+ +..| .+.+.++++. .+||+||+|.+..++ +.+... .
T Consensus 71 -----~~~~~~-----------~~~~~~--~~~~~~~~~~~~~l~~~l~~--~~pD~Vi~~~~~~~~--~~~~~~----~ 124 (380)
T PRK13609 71 -----LFYYGV-----------EKIYDK--KIFSWYANFGRKRLKLLLQA--EKPDIVINTFPIIAV--PELKKQ----T 124 (380)
T ss_pred -----HHHhcc-----------Ccccch--HHHHHHHHHHHHHHHHHHHH--hCcCEEEEcChHHHH--HHHHHh----c
Confidence 000000 001110 0011 1111 2445556653 689999999655432 232221 1
Q ss_pred CCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCC
Q 004879 488 LNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQ 567 (725)
Q Consensus 488 l~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~ 567 (725)
..++|++.+++++.. .. +.....+|.++++|+..++.+...
T Consensus 125 ~~~ip~~~~~td~~~-----~~------------------------------~~~~~~ad~i~~~s~~~~~~l~~~---- 165 (380)
T PRK13609 125 GISIPTYNVLTDFCL-----HK------------------------------IWVHREVDRYFVATDHVKKVLVDI---- 165 (380)
T ss_pred CCCCCeEEEeCCCCC-----Cc------------------------------ccccCCCCEEEECCHHHHHHHHHc----
Confidence 247898866654310 00 012346899999999888877652
Q ss_pred CcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCC-EEEEeecCcCCCC
Q 004879 568 GLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKP-LVGCITRLVPQKG 646 (725)
Q Consensus 568 GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~p-lV~fVGRL~~qKG 646 (725)
| .++.++.+++|.++. .|.+.. .+..+++++|+++ +++ ++++.|++...||
T Consensus 166 g------i~~~ki~v~G~p~~~-~f~~~~------------------~~~~~~~~~~l~~---~~~~il~~~G~~~~~k~ 217 (380)
T PRK13609 166 G------VPPEQVVETGIPIRS-SFELKI------------------NPDIIYNKYQLCP---NKKILLIMAGAHGVLGN 217 (380)
T ss_pred C------CChhHEEEECcccCh-HHcCcC------------------CHHHHHHHcCCCC---CCcEEEEEcCCCCCCcC
Confidence 2 245677776555442 232210 2335788899974 445 5566799999999
Q ss_pred HHHHHHHHHHhhcCCcEEEEEcC-CC-cc-cccH------------------HHHHHhcCeEEEcCCcccchHHHHHHcC
Q 004879 647 VHLIRHAIYRTLELGGQFILLGS-SP-VP-HIQV------------------YPILLSSFSFLRKHIFNICNLYIKLGQG 705 (725)
Q Consensus 647 vdlLieA~~~L~~~~iqLVIvG~-Gp-~~-~le~------------------~~iyAaADIfVlPS~~EpfGLv~LEAMg 705 (725)
+..+++++... .+++++++|+ ++ .. .+++ ..+|++||++|. ++.|+|++|||+
T Consensus 218 ~~~li~~l~~~--~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~aD~~v~----~~gg~t~~EA~a 291 (380)
T PRK13609 218 VKELCQSLMSV--PDLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFRVTSCMIT----KPGGITLSEAAA 291 (380)
T ss_pred HHHHHHHHhhC--CCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHhccEEEe----CCCchHHHHHHH
Confidence 99999988653 5789887743 32 11 1111 189999999885 567999999997
Q ss_pred CCcccc
Q 004879 706 GDLTVN 711 (725)
Q Consensus 706 ~~~~V~ 711 (725)
++.||+
T Consensus 292 ~g~PvI 297 (380)
T PRK13609 292 LGVPVI 297 (380)
T ss_pred hCCCEE
Confidence 766654
No 80
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.49 E-value=6.2e-13 Score=126.41 Aligned_cols=174 Identities=27% Similarity=0.360 Sum_probs=91.5
Q ss_pred cCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeCCeeEE
Q 004879 339 AAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVY 418 (725)
Q Consensus 339 s~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~GI~V~ 418 (725)
+..+.|. .||++.++.+|+++|+++||+|+|+++..+...... ....
T Consensus 4 ~~~~~~~--~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~-------------------------------~~~~ 50 (177)
T PF13439_consen 4 TNIFLPN--IGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEE-------------------------------LVKI 50 (177)
T ss_dssp ECC-TTS--SSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SST-------------------------------EEEE
T ss_pred EEecCCC--CChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhh-------------------------------ccce
Confidence 3345553 799999999999999999999999998865422100 0000
Q ss_pred EeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEee
Q 004879 419 FIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCH 498 (725)
Q Consensus 419 ~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiH 498 (725)
.... + ..... .......+.+.+...+++ .+|||||+|.+.....+.. .. . ++|+|+|+|
T Consensus 51 ~~~~--~--~~~~~-------~~~~~~~~~~~~~~~i~~--~~~DiVh~~~~~~~~~~~~--~~-----~-~~~~v~~~H 109 (177)
T PF13439_consen 51 FVKI--P--YPIRK-------RFLRSFFFMRRLRRLIKK--EKPDIVHIHGPPAFWIALL--AC-----R-KVPIVYTIH 109 (177)
T ss_dssp ---T--T---SSTS-------S--HHHHHHHHHHHHHHH--HT-SEEECCTTHCCCHHHH--HH-----H-CSCEEEEE-
T ss_pred eeee--e--ccccc-------ccchhHHHHHHHHHHHHH--cCCCeEEecccchhHHHHH--hc-----c-CCCEEEEeC
Confidence 0000 0 00000 111222334555566665 3899999998765543221 11 1 689999999
Q ss_pred CCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCC
Q 004879 499 NFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSK 578 (725)
Q Consensus 499 n~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~ 578 (725)
+..+. .... ....... ......+++....++|.+++||+..++++.. ++ .++.
T Consensus 110 ~~~~~----~~~~---~~~~~~~----------~~~~~~~~~~~~~~~~~ii~vS~~~~~~l~~-~~---------~~~~ 162 (177)
T PF13439_consen 110 GPYFE----RRFL---KSKLSPY----------SYLNFRIERKLYKKADRIIAVSESTKDELIK-FG---------IPPE 162 (177)
T ss_dssp HHH------HHTT---TTSCCCH----------HHHHHCTTHHHHCCSSEEEESSHHHHHHHHH-HT-----------SS
T ss_pred CCccc----cccc---ccccchh----------hhhhhhhhhhHHhcCCEEEEECHHHHHHHHH-hC---------Cccc
Confidence 86421 0000 0000000 0001122345577899999999999998876 32 3568
Q ss_pred cEEEEeCCccCCCCC
Q 004879 579 KFVGILNGIDTDAWN 593 (725)
Q Consensus 579 Kv~vIpNGID~~~f~ 593 (725)
++.+||||||++.|.
T Consensus 163 ki~vI~ngid~~~F~ 177 (177)
T PF13439_consen 163 KIHVIYNGIDTDRFR 177 (177)
T ss_dssp -EEE----B-CCCH-
T ss_pred CCEEEECCccHHHcC
Confidence 999999999998763
No 81
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.48 E-value=8.1e-13 Score=145.44 Aligned_cols=191 Identities=13% Similarity=-0.001 Sum_probs=127.3
Q ss_pred HHHHHHHHHcCCCceEEEECC-CchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccc
Q 004879 449 RAALELLLQAGKQPDIIHCHD-WQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRM 527 (725)
Q Consensus 449 ravlelL~~~~~kPDIIH~Hd-w~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l 527 (725)
+...++++ ..+|||||||. |.+.+. ...+..+...+..++|++.+++++. ... .
T Consensus 90 ~~l~~~i~--~~~pDvIi~thp~~~~~~-~~~l~~~~~~~~~~~p~~~~~tD~~-~~~------------~--------- 144 (382)
T PLN02605 90 REVAKGLM--KYKPDIIVSVHPLMQHVP-LRVLRWQGKELGKKIPFTTVVTDLG-TCH------------P--------- 144 (382)
T ss_pred HHHHHHHH--hcCcCEEEEeCcCcccCH-HHHHHHHhhccCCCCCEEEEECCCC-CcC------------c---------
Confidence 34445555 36899999964 433321 1122222111134789988887652 000 0
Q ss_pred cccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcc
Q 004879 528 QDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNAN 607 (725)
Q Consensus 528 ~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~ 607 (725)
......+|.++++|+..++.+... | .+++|+.+++|++|...+.+.
T Consensus 145 ------------~w~~~~~d~~~~~s~~~~~~l~~~----g------~~~~ki~v~g~~v~~~f~~~~------------ 190 (382)
T PLN02605 145 ------------TWFHKGVTRCFCPSEEVAKRALKR----G------LEPSQIRVYGLPIRPSFARAV------------ 190 (382)
T ss_pred ------------ccccCCCCEEEECCHHHHHHHHHc----C------CCHHHEEEECcccCHhhccCC------------
Confidence 011346899999999988887652 2 246789999999987544332
Q ss_pred cccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhh------cCCcE-EEEEcCCCc-c-cccH-
Q 004879 608 DLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL------ELGGQ-FILLGSSPV-P-HIQV- 677 (725)
Q Consensus 608 d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~------~~~iq-LVIvG~Gp~-~-~le~- 677 (725)
..+..+|+++|+++ +.++|+++||....||+..+++++..+. ..+.+ ++++|.++. . .+++
T Consensus 191 ------~~~~~~r~~~gl~~---~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~~~~~L~~~ 261 (382)
T PLN02605 191 ------RPKDELRRELGMDE---DLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNKKLQSKLESR 261 (382)
T ss_pred ------CCHHHHHHHcCCCC---CCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCHHHHHHHHhh
Confidence 14567899999984 6799999999999999999999998754 24565 567887642 1 1211
Q ss_pred ---------------HHHHHhcCeEEEcCCcccchHHHHHHcCCCcccc
Q 004879 678 ---------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVN 711 (725)
Q Consensus 678 ---------------~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V~ 711 (725)
..+|++||++|.+| .|+|++|||+++.||+
T Consensus 262 ~~~~~v~~~G~~~~~~~l~~aaDv~V~~~----g~~ti~EAma~g~PvI 306 (382)
T PLN02605 262 DWKIPVKVRGFVTNMEEWMGACDCIITKA----GPGTIAEALIRGLPII 306 (382)
T ss_pred cccCCeEEEeccccHHHHHHhCCEEEECC----CcchHHHHHHcCCCEE
Confidence 18999999999976 4889999997777654
No 82
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=99.47 E-value=4.9e-13 Score=125.01 Aligned_cols=160 Identities=23% Similarity=0.248 Sum_probs=84.7
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeCCeeEEEeCCCCCCcc
Q 004879 349 GGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKF 428 (725)
Q Consensus 349 GGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~GI~V~~I~~~~ps~~ 428 (725)
||++.++.+|+++|+++||+|+|++|.+...... ....|++++.++...
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~---- 49 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPEDDE---------------------------EEEDGVRVHRLPLPR---- 49 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GGG-S---------------------------EEETTEEEEEE--S-----
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCcccc---------------------------cccCCceEEeccCCc----
Confidence 8999999999999999999999999886543210 013466666554210
Q ss_pred cccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCCh
Q 004879 429 FWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPA 508 (725)
Q Consensus 429 F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~ 508 (725)
...... ... +......++.....+|||||+|+|.+++++. +... ..++|+|+|+|+..+....+
T Consensus 50 --~~~~~~---~~~----~~~~~~~~l~~~~~~~Dvv~~~~~~~~~~~~-~~~~-----~~~~p~v~~~h~~~~~~~~~- 113 (160)
T PF13579_consen 50 --RPWPLR---LLR----FLRRLRRLLAARRERPDVVHAHSPTAGLVAA-LARR-----RRGIPLVVTVHGTLFRRGSR- 113 (160)
T ss_dssp --SSSGGG---HCC----HHHHHHHHCHHCT---SEEEEEHHHHHHHHH-HHHH-----HHT--EEEE-SS-T-------
T ss_pred --cchhhh---hHH----HHHHHHHHHhhhccCCeEEEecccchhHHHH-HHHH-----ccCCcEEEEECCCchhhccc-
Confidence 000000 111 2233333443346799999999987666533 3221 13799999999864221100
Q ss_pred hhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCC
Q 004879 509 KELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNG 586 (725)
Q Consensus 509 ~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNG 586 (725)
+ .. .-...+++..+..||.|+++|+..++.+.. .+ .+.+++.+||||
T Consensus 114 --~-----~~--------------~~~~~~~~~~~~~ad~vi~~S~~~~~~l~~-~g---------~~~~ri~vipnG 160 (160)
T PF13579_consen 114 --W-----KR--------------RLYRWLERRLLRRADRVIVVSEAMRRYLRR-YG---------VPPDRIHVIPNG 160 (160)
T ss_dssp --H-----HH--------------HHHHHHHHHHHHH-SEEEESSHHHHHHHHH-H------------GGGEEE----
T ss_pred --h-----hh--------------HHHHHHHHHHHhcCCEEEECCHHHHHHHHH-hC---------CCCCcEEEeCcC
Confidence 0 00 001234678889999999999999998876 22 356899999998
No 83
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.44 E-value=9.8e-13 Score=156.64 Aligned_cols=210 Identities=18% Similarity=0.190 Sum_probs=131.9
Q ss_pred CceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhh
Q 004879 461 QPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLK 540 (725)
Q Consensus 461 kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k 540 (725)
.-|+|-+||+|-.++ |.++... ..+.|+-|.+|-. +|...+..| +|.. .-+-
T Consensus 133 ~~d~vwvhDYhl~l~-p~~lr~~----~~~~~igfFlH~p-----fP~~~~f~~-lp~~-----------------~~ll 184 (726)
T PRK14501 133 PGDVVWVHDYQLMLL-PAMLRER----LPDARIGFFLHIP-----FPSFEVFRL-LPWR-----------------EEIL 184 (726)
T ss_pred CCCEEEEeCchhhhH-HHHHHhh----CCCCcEEEEeeCC-----CCChHHHhh-CCCh-----------------HHHH
Confidence 459999999999888 4554431 3578999999975 333222211 2210 1122
Q ss_pred hhhhhccEEEEeCHHHHHHHHhhcc-CCCccc-----ccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhh
Q 004879 541 GAIVFSNIVTTVSPSYAQEVRTSEG-GQGLHS-----TLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAE 614 (725)
Q Consensus 541 ~ai~~AD~VitVS~~~a~ev~~~~~-g~GL~~-----~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~ 614 (725)
.++-.||.|-+=+..|++.....-. -.|+.. .+.....++.++|||||++.|.|.... . . ...
T Consensus 185 ~~ll~~Dligf~t~~~~r~Fl~~~~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~~-------~-~---~~~ 253 (726)
T PRK14501 185 EGLLGADLIGFHTYDYVRHFLSSVLRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQD-------P-E---VQE 253 (726)
T ss_pred HHHhcCCeEEeCCHHHHHHHHHHHHHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHHhcC-------c-h---HHH
Confidence 4456677777777776655432100 001100 011123468899999999988764210 0 0 001
Q ss_pred hHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhcC------CcEEEEEcCC-----Ccc-ccc------
Q 004879 615 NKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL------GGQFILLGSS-----PVP-HIQ------ 676 (725)
Q Consensus 615 ~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~~------~iqLVIvG~G-----p~~-~le------ 676 (725)
....+|+.++ ++++|++|||+.+.||+..+++|+.++++. +++|+++|.| +.. .++
T Consensus 254 ~~~~lr~~~~------~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~ 327 (726)
T PRK14501 254 EIRRLRQDLR------GRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDEL 327 (726)
T ss_pred HHHHHHHHcC------CCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHH
Confidence 1223555432 567999999999999999999999998752 3688888732 110 010
Q ss_pred ------------------------HH---HHHHhcCeEEEcCCcccchHHHHHHcCC-----CccccCCCC
Q 004879 677 ------------------------VY---PILLSSFSFLRKHIFNICNLYIKLGQGG-----DLTVNNNCE 715 (725)
Q Consensus 677 ------------------------~~---~iyAaADIfVlPS~~EpfGLv~LEAMg~-----~~~V~~~~~ 715 (725)
.+ .+|++||+|++||.+|+||+|++|||++ +.+|.....
T Consensus 328 v~~in~~~~~~~~~pv~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~ 398 (726)
T PRK14501 328 VGRINGEFGTVDWTPIHYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMA 398 (726)
T ss_pred HHHHHhhcCCCCcceEEEEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEeccc
Confidence 01 7999999999999999999999999976 446655543
No 84
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.42 E-value=2.1e-12 Score=154.84 Aligned_cols=221 Identities=16% Similarity=0.200 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCccc
Q 004879 447 FSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDR 526 (725)
Q Consensus 447 FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~ 526 (725)
|+.++.+.+ ..-|+|=+||+|-.++ |.++... ..+.++.|.+|-. +|...+..| +|.
T Consensus 137 FA~~i~~~~----~~~d~vWvhDYhL~ll-p~~lR~~----~~~~~igfFlHiP-----FPs~e~fr~-lp~-------- 193 (797)
T PLN03063 137 FLDVVKENY----EEGDVVWCHDYHLMFL-PQYLKEY----NNKMKVGWFLHTP-----FPSSEIYKT-LPS-------- 193 (797)
T ss_pred HHHHHHHhc----CCCCEEEEecchhhhH-HHHHHHh----CCCCcEEEEecCC-----CCCHHHHhh-CCC--------
Confidence 444444433 3458999999999888 4555432 3578999999975 333222111 111
Q ss_pred ccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhcc-CCCccc----c-cccCCCcEEEEeCCccCCCCCCCCcchh
Q 004879 527 MQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEG-GQGLHS----T-LNFHSKKFVGILNGIDTDAWNPATDTFL 600 (725)
Q Consensus 527 l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~-g~GL~~----~-l~~~~~Kv~vIpNGID~~~f~P~~d~~l 600 (725)
+- -+-.++-.||.|-+-+..|++.....-- -.|++. + ......++.+||||||++.|.+....
T Consensus 194 --------r~-~il~gll~aDligF~t~~y~r~Fl~~~~r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~-- 262 (797)
T PLN03063 194 --------RS-ELLRAVLTADLIGFHTYDFARHFLSACTRILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCEL-- 262 (797)
T ss_pred --------HH-HHHHHHhcCCEEEeCCHHHHHHHHHHHHHHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcC--
Confidence 01 1234566788888888888766543110 001111 0 11223578899999999888653110
Q ss_pred hhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhcC--Cc----EEEEEc-----C
Q 004879 601 KVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL--GG----QFILLG-----S 669 (725)
Q Consensus 601 ~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~~--~i----qLVIvG-----~ 669 (725)
++ -......+++.++ ++++|++|||+.+.||+..+++|++++++. +. .|+.++ +
T Consensus 263 -----~~----~~~~~~~lr~~~~------~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia~psr~~ 327 (797)
T PLN03063 263 -----PE----VKQHMKELKRFFA------GRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAVPTRND 327 (797)
T ss_pred -----hh----HHHHHHHHHHhcC------CCeEEEEecccccccCHHHHHHHHHHHHHhCccccCcEEEEEEecCCCCc
Confidence 00 0011124455543 458999999999999999999999998752 32 344333 2
Q ss_pred CCcc-cccH---------------------------------HHHHHhcCeEEEcCCcccchHHHHHHcCCCc-----cc
Q 004879 670 SPVP-HIQV---------------------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDL-----TV 710 (725)
Q Consensus 670 Gp~~-~le~---------------------------------~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~-----~V 710 (725)
|+.. .++. ..+|++||+||+||.+|+||+|++|||+++. +|
T Consensus 328 ~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlV 407 (797)
T PLN03063 328 VPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLV 407 (797)
T ss_pred hHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEE
Confidence 2221 0100 1899999999999999999999999997764 45
Q ss_pred cCCCCC
Q 004879 711 NNNCEP 716 (725)
Q Consensus 711 ~~~~~G 716 (725)
....+|
T Consensus 408 lSe~~G 413 (797)
T PLN03063 408 LSEFAG 413 (797)
T ss_pred eeCCcC
Confidence 454444
No 85
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.31 E-value=4e-11 Score=131.57 Aligned_cols=185 Identities=17% Similarity=0.143 Sum_probs=124.2
Q ss_pred cCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchh
Q 004879 458 AGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRIN 537 (725)
Q Consensus 458 ~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in 537 (725)
.+.++.|+.++.+.+..+ ... +.+.++|+.+|+.. .. .+ +.+. ....
T Consensus 99 ~~~~~~i~~~~~P~~~~~----~~~-----~~~~~~Vyd~~D~~-~~-~~-------~~~~---------------~~~~ 145 (373)
T cd04950 99 LGFGRPILWYYTPYTLPV----AAL-----LQASLVVYDCVDDL-SA-FP-------GGPP---------------ELLE 145 (373)
T ss_pred cCCCCcEEEEeCccHHHH----Hhh-----cCCCeEEEEcccch-hc-cC-------CCCH---------------HHHH
Confidence 366788888886554432 111 24789999999742 10 00 0000 0113
Q ss_pred hhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHH
Q 004879 538 PLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKE 617 (725)
Q Consensus 538 ~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~ 617 (725)
.++..+..||.|+|+|+.+.+.+.. + ..++++||||+|.+.|.|..... ..
T Consensus 146 ~e~~~~~~ad~vi~~S~~l~~~~~~--~-----------~~~i~~i~ngvd~~~f~~~~~~~---------------~~- 196 (373)
T cd04950 146 AERRLLKRADLVFTTSPSLYEAKRR--L-----------NPNVVLVPNGVDYEHFAAARDPP---------------PP- 196 (373)
T ss_pred HHHHHHHhCCEEEECCHHHHHHHhh--C-----------CCCEEEcccccCHHHhhcccccC---------------CC-
Confidence 5677889999999999988876543 1 25789999999999887642110 00
Q ss_pred HHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhcCCcEEEEEcCCCcc-c---cc-------------H--H
Q 004879 618 SIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPVP-H---IQ-------------V--Y 678 (725)
Q Consensus 618 aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~~~iqLVIvG~Gp~~-~---le-------------~--~ 678 (725)
.+...+ .+.++++|+|++.+.++++++.+++.. ..+++|+|+|.|+.. . +. . .
T Consensus 197 -~~~~~~-----~~~~~i~y~G~l~~~~d~~ll~~la~~--~p~~~~vliG~~~~~~~~~~~~~~~nV~~~G~~~~~~l~ 268 (373)
T cd04950 197 -PADLAA-----LPRPVIGYYGAIAEWLDLELLEALAKA--RPDWSFVLIGPVDVSIDPSALLRLPNVHYLGPKPYKELP 268 (373)
T ss_pred -hhHHhc-----CCCCEEEEEeccccccCHHHHHHHHHH--CCCCEEEEECCCcCccChhHhccCCCEEEeCCCCHHHHH
Confidence 111111 256899999999998888877665543 257999999997311 1 10 0 1
Q ss_pred HHHHhcCeEEEcCCc-----ccchHHHHHHcCCCccccC
Q 004879 679 PILLSSFSFLRKHIF-----NICNLYIKLGQGGDLTVNN 712 (725)
Q Consensus 679 ~iyAaADIfVlPS~~-----EpfGLv~LEAMg~~~~V~~ 712 (725)
.+|+++|++++|+.. +.+|+..+|+|+++.||+.
T Consensus 269 ~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVa 307 (373)
T cd04950 269 AYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVA 307 (373)
T ss_pred HHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEe
Confidence 899999999999963 4679999999999988764
No 86
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.27 E-value=1.8e-10 Score=127.54 Aligned_cols=130 Identities=13% Similarity=0.120 Sum_probs=89.5
Q ss_pred hhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHc
Q 004879 544 VFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHL 623 (725)
Q Consensus 544 ~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~l 623 (725)
.++|.++++|+..++.+... | .+..++.++.|+|+.. |.+. ..+..+++++
T Consensus 146 ~~~d~~~v~s~~~~~~l~~~----g------i~~~ki~v~GiPv~~~-f~~~------------------~~~~~~~~~~ 196 (391)
T PRK13608 146 PYSTRYYVATKETKQDFIDV----G------IDPSTVKVTGIPIDNK-FETP------------------IDQKQWLIDN 196 (391)
T ss_pred CCCCEEEECCHHHHHHHHHc----C------CCHHHEEEECeecChH-hccc------------------ccHHHHHHHc
Confidence 46899999999988887652 2 2456888877777643 3221 1234677889
Q ss_pred CCCCCCCCCC-EEEEeecCcCCCCHHHHHHHHHHhhcCCcEEEEE-cCCCc--ccccH-----------------HHHHH
Q 004879 624 GLSSADARKP-LVGCITRLVPQKGVHLIRHAIYRTLELGGQFILL-GSSPV--PHIQV-----------------YPILL 682 (725)
Q Consensus 624 GL~~~d~~~p-lV~fVGRL~~qKGvdlLieA~~~L~~~~iqLVIv-G~Gp~--~~le~-----------------~~iyA 682 (725)
|+++ +.+ ++++.||+...||++.+++++... ..+++++++ |.++. ..+++ ..+|+
T Consensus 197 ~l~~---~~~~ilv~~G~lg~~k~~~~li~~~~~~-~~~~~~vvv~G~~~~l~~~l~~~~~~~~~v~~~G~~~~~~~~~~ 272 (391)
T PRK13608 197 NLDP---DKQTILMSAGAFGVSKGFDTMITDILAK-SANAQVVMICGKSKELKRSLTAKFKSNENVLILGYTKHMNEWMA 272 (391)
T ss_pred CCCC---CCCEEEEECCCcccchhHHHHHHHHHhc-CCCceEEEEcCCCHHHHHHHHHHhccCCCeEEEeccchHHHHHH
Confidence 9974 445 456799999999999999986432 246888766 54421 11111 18999
Q ss_pred hcCeEEEcCCcccchHHHHHHcCCCccc
Q 004879 683 SSFSFLRKHIFNICNLYIKLGQGGDLTV 710 (725)
Q Consensus 683 aADIfVlPS~~EpfGLv~LEAMg~~~~V 710 (725)
+||++|. .|.|+|..|||+++.||
T Consensus 273 ~aDl~I~----k~gg~tl~EA~a~G~Pv 296 (391)
T PRK13608 273 SSQLMIT----KPGGITISEGLARCIPM 296 (391)
T ss_pred hhhEEEe----CCchHHHHHHHHhCCCE
Confidence 9999997 46799999999666554
No 87
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.22 E-value=2.9e-10 Score=129.25 Aligned_cols=213 Identities=17% Similarity=0.137 Sum_probs=137.3
Q ss_pred CceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhh
Q 004879 461 QPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLK 540 (725)
Q Consensus 461 kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k 540 (725)
.-|+|=+||+|-.++ |.++... ..+.++-|.+|-. +|...+..| +|.. .-+-
T Consensus 132 ~~d~vWVhDYhL~ll-p~~LR~~----~~~~~IgfFlHiP-----FPs~eifr~-LP~r-----------------~~ll 183 (487)
T TIGR02398 132 EGATVWVHDYNLWLV-PGYIRQL----RPDLKIAFFHHTP-----FPSADVFNI-LPWR-----------------EQII 183 (487)
T ss_pred CCCEEEEecchhhHH-HHHHHHh----CCCCeEEEEeeCC-----CCChHHHhh-CCch-----------------HHHH
Confidence 458999999999888 4444432 3578999999964 333222111 1110 1122
Q ss_pred hhhhhccEEEEeCHHHHHHHHhhcc-CCCcccc------------------------c--ccCCCcEEEEeCCccCCCCC
Q 004879 541 GAIVFSNIVTTVSPSYAQEVRTSEG-GQGLHST------------------------L--NFHSKKFVGILNGIDTDAWN 593 (725)
Q Consensus 541 ~ai~~AD~VitVS~~~a~ev~~~~~-g~GL~~~------------------------l--~~~~~Kv~vIpNGID~~~f~ 593 (725)
.++-.||.|-+=+..|++..+..-- -.|+... + ....-++.++|.|||++.|.
T Consensus 184 ~glL~aDliGFqt~~y~~~Fl~~~~r~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~gr~v~v~~~PiGID~~~f~ 263 (487)
T TIGR02398 184 GSLLCCDYIGFHIPRYVENFVDAARGLMPLQTVSRQNVDPRFITVGTALGEERMTTALDTGNRVVKLGAHPVGTDPERIR 263 (487)
T ss_pred HHHhcCCeEEeCCHHHHHHHHHHHHHHhCCccccccccccccccccccccccccccceeECCEEEEEEEEECEecHHHHH
Confidence 3456678888777777765433110 0011110 0 01223478999999999886
Q ss_pred CCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhcC------CcEEEEE
Q 004879 594 PATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL------GGQFILL 667 (725)
Q Consensus 594 P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~~------~iqLVIv 667 (725)
+.... + + -......+|+++| ++++|+.|+|+.+.||+...++|++++++. ++.||++
T Consensus 264 ~~~~~-------~---~-~~~~~~~lr~~~~------~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi 326 (487)
T TIGR02398 264 SALAA-------A---S-IREMMERIRSELA------GVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTA 326 (487)
T ss_pred HHhcC-------c---h-HHHHHHHHHHHcC------CceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEE
Confidence 53210 0 0 0112346788877 358999999999999999999999998752 4789988
Q ss_pred cCCCc---cc---ccHH---------------------------------HHHHhcCeEEEcCCcccchHHHHHHcCCC-
Q 004879 668 GSSPV---PH---IQVY---------------------------------PILLSSFSFLRKHIFNICNLYIKLGQGGD- 707 (725)
Q Consensus 668 G~Gp~---~~---le~~---------------------------------~iyAaADIfVlPS~~EpfGLv~LEAMg~~- 707 (725)
|.+.. +. ++.+ .+|++||++++||..||++||+.|+|++.
T Consensus 327 ~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~ 406 (487)
T TIGR02398 327 CVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQG 406 (487)
T ss_pred eCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhc
Confidence 87531 11 1110 89999999999999999999999999653
Q ss_pred ----ccccCCCCCce
Q 004879 708 ----LTVNNNCEPWL 718 (725)
Q Consensus 708 ----~~V~~~~~G~l 718 (725)
..|.....|.-
T Consensus 407 ~~~GvLILSefaGaa 421 (487)
T TIGR02398 407 LLDGVLVLSEFAGAA 421 (487)
T ss_pred CCCCCEEEeccccch
Confidence 34556666654
No 88
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.18 E-value=4.1e-10 Score=122.82 Aligned_cols=184 Identities=12% Similarity=-0.042 Sum_probs=109.5
Q ss_pred HHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCccccccc
Q 004879 451 ALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDN 530 (725)
Q Consensus 451 vlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~ 530 (725)
+.++++ ..+||+||+|++.+... .+... +. ..++|+++..|+..+ .+
T Consensus 77 ~~~~l~--~~kPdivi~~~~~~~~~-~~a~~--a~--~~~ip~i~~~~~~~~---------~~----------------- 123 (380)
T PRK00025 77 LKRRLL--AEPPDVFIGIDAPDFNL-RLEKK--LR--KAGIPTIHYVSPSVW---------AW----------------- 123 (380)
T ss_pred HHHHHH--HcCCCEEEEeCCCCCCH-HHHHH--HH--HCCCCEEEEeCCchh---------hc-----------------
Confidence 334454 36899999998533221 11111 11 247999987664311 00
Q ss_pred ccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCccccc
Q 004879 531 SAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQ 610 (725)
Q Consensus 531 ~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~ 610 (725)
...+. +.....+|.++++|+..++.+.. . | .++.++.|.+.... .+.
T Consensus 124 -~~~~~---~~~~~~~d~i~~~~~~~~~~~~~--~--g---------~~~~~~G~p~~~~~-~~~--------------- 170 (380)
T PRK00025 124 -RQGRA---FKIAKATDHVLALFPFEAAFYDK--L--G---------VPVTFVGHPLADAI-PLL--------------- 170 (380)
T ss_pred -CchHH---HHHHHHHhhheeCCccCHHHHHh--c--C---------CCeEEECcCHHHhc-ccc---------------
Confidence 00111 12356789999999877665543 1 1 13445545443221 110
Q ss_pred chhhhHHHHHHHcCCCCCCCCCCEE-EEee-cCcCC-CCHHHHHHHHHHhhc--CCcEEEEEcC-CCccc-cc-------
Q 004879 611 GKAENKESIRKHLGLSSADARKPLV-GCIT-RLVPQ-KGVHLIRHAIYRTLE--LGGQFILLGS-SPVPH-IQ------- 676 (725)
Q Consensus 611 gK~~~K~aLRk~lGL~~~d~~~plV-~fVG-RL~~q-KGvdlLieA~~~L~~--~~iqLVIvG~-Gp~~~-le------- 676 (725)
..+..+++++|+++ +.+++ ++.| |.... ++++.+++|+..+.+ .+++|+++|. ++... ++
T Consensus 171 ---~~~~~~~~~l~~~~---~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~ 244 (380)
T PRK00025 171 ---PDRAAARARLGLDP---DARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPKRREQIEEALAEYA 244 (380)
T ss_pred ---cChHHHHHHcCCCC---CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChhhHHHHHHHHhhcC
Confidence 12456788899873 45654 4455 55554 447899999988864 3689999976 43211 10
Q ss_pred ----------HHHHHHhcCeEEEcCCcccchHHHHHHcCCCcccc
Q 004879 677 ----------VYPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVN 711 (725)
Q Consensus 677 ----------~~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V~ 711 (725)
-..+|++||++|+|| |.+.+|||+++.||+
T Consensus 245 ~~~v~~~~~~~~~~~~~aDl~v~~s-----G~~~lEa~a~G~PvI 284 (380)
T PRK00025 245 GLEVTLLDGQKREAMAAADAALAAS-----GTVTLELALLKVPMV 284 (380)
T ss_pred CCCeEEEcccHHHHHHhCCEEEECc-----cHHHHHHHHhCCCEE
Confidence 028999999999998 889999997776654
No 89
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.15 E-value=5.9e-10 Score=120.34 Aligned_cols=193 Identities=13% Similarity=0.067 Sum_probs=117.2
Q ss_pred HHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCccccc
Q 004879 449 RAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQ 528 (725)
Q Consensus 449 ravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~ 528 (725)
..+.+.++. .+||+||+|.+....++...... ..++|+|++.|+... +.. +.+..
T Consensus 78 ~~l~~~l~~--~~pDvV~~~g~~~~~~~~~~aa~-----~~~iPvv~~~~g~~s---~~~------~~~~~--------- 132 (363)
T cd03786 78 IGLEAVLLE--EKPDLVLVLGDTNETLAAALAAF-----KLGIPVAHVEAGLRS---FDR------GMPDE--------- 132 (363)
T ss_pred HHHHHHHHH--hCCCEEEEeCCchHHHHHHHHHH-----HcCCCEEEEeccccc---CCC------CCCch---------
Confidence 334444543 58999999974332222233322 248999987775421 000 00000
Q ss_pred ccccccchhhhh-hhhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCc-cCCCCCCCCcchhhhccCc
Q 004879 529 DNSAHDRINPLK-GAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGI-DTDAWNPATDTFLKVQYNA 606 (725)
Q Consensus 529 d~~~~~~in~~k-~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGI-D~~~f~P~~d~~l~~~ys~ 606 (725)
..+ .....+|.++++|+..++.+... | .++.++.+|+||+ |...|.+..
T Consensus 133 ---------~~r~~~~~~ad~~~~~s~~~~~~l~~~----G------~~~~kI~vign~v~d~~~~~~~~---------- 183 (363)
T cd03786 133 ---------ENRHAIDKLSDLHFAPTEEARRNLLQE----G------EPPERIFVVGNTMIDALLRLLEL---------- 183 (363)
T ss_pred ---------HHHHHHHHHhhhccCCCHHHHHHHHHc----C------CCcccEEEECchHHHHHHHHHHh----------
Confidence 011 12356899999999988877642 2 2467899999985 543322210
Q ss_pred ccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcC---CCCHHHHHHHHHHhhcCCcEEEEEcCCCcc-ccc------
Q 004879 607 NDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVP---QKGVHLIRHAIYRTLELGGQFILLGSSPVP-HIQ------ 676 (725)
Q Consensus 607 ~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~---qKGvdlLieA~~~L~~~~iqLVIvG~Gp~~-~le------ 676 (725)
......++.+|+++ +..++++.||... .||++.+++|+..+.+.++++++.|+++.. .++
T Consensus 184 -------~~~~~~~~~~~~~~---~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~~~~l~~~~~~~ 253 (363)
T cd03786 184 -------AKKELILELLGLLP---KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRTRPRIREAGLEF 253 (363)
T ss_pred -------hccchhhhhcccCC---CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCChHHHHHHHHHhh
Confidence 00112345677762 4456778999875 799999999999886445778877776522 110
Q ss_pred ----H-------------HHHHHhcCeEEEcCCcccchHHHHHHcCCCccc
Q 004879 677 ----V-------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTV 710 (725)
Q Consensus 677 ----~-------------~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V 710 (725)
. ..+|++||++|.||- | ++.|||.++.||
T Consensus 254 ~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sg----g-i~~Ea~~~g~Pv 299 (363)
T cd03786 254 LGHHPNVLLISPLGYLYFLLLLKNADLVLTDSG----G-IQEEASFLGVPV 299 (363)
T ss_pred ccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCc----c-HHhhhhhcCCCE
Confidence 0 178999999999994 5 478998554443
No 90
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.13 E-value=1.3e-10 Score=112.30 Aligned_cols=99 Identities=18% Similarity=0.219 Sum_probs=75.1
Q ss_pred HHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhh---cCCcEEEEEcCCCccc-cc---------------
Q 004879 616 KESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL---ELGGQFILLGSSPVPH-IQ--------------- 676 (725)
Q Consensus 616 K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~---~~~iqLVIvG~Gp~~~-le--------------- 676 (725)
|...+...+.+ .+.++|+|+||+.+.||++.+++|+..+. ..+++++|+|.++... +.
T Consensus 2 ~~~~~~~~~~~---~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~ 78 (172)
T PF00534_consen 2 KDKLREKLKIP---DKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFL 78 (172)
T ss_dssp HHHHHHHTTT----TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEE
T ss_pred hHHHHHHcCCC---CCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccccccccccccccccccccccccc
Confidence 45667777776 36789999999999999999999999986 3689999999665321 10
Q ss_pred -----H--HHHHHhcCeEEEcCCcccchHHHHHHcCCCcccc-CCCCCc
Q 004879 677 -----V--YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVN-NNCEPW 717 (725)
Q Consensus 677 -----~--~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V~-~~~~G~ 717 (725)
. ..+|+.||++|+||.+|+||++++|||+++.||+ ++.+|+
T Consensus 79 ~~~~~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~ 127 (172)
T PF00534_consen 79 GYVPDDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGN 127 (172)
T ss_dssp ESHSHHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHH
T ss_pred ccccccccccccccceeccccccccccccccccccccccceeeccccCC
Confidence 0 1899999999999999999999999997766643 444443
No 91
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.02 E-value=3.5e-09 Score=115.51 Aligned_cols=192 Identities=13% Similarity=0.032 Sum_probs=116.5
Q ss_pred HHHHHHHcCCCceEEEECC-CchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccc
Q 004879 451 ALELLLQAGKQPDIIHCHD-WQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQD 529 (725)
Q Consensus 451 vlelL~~~~~kPDIIH~Hd-w~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d 529 (725)
+.++++ ..+||+||+|. +.+++++.+ ... ..++|++++-++....+.+. .+
T Consensus 78 l~~~l~--~~~pDiv~~~gd~~~~la~a~-aa~-----~~~ipv~h~~~g~~s~~~~~-------~~------------- 129 (365)
T TIGR00236 78 LEELLL--EEKPDIVLVQGDTTTTLAGAL-AAF-----YLQIPVGHVEAGLRTGDRYS-------PM------------- 129 (365)
T ss_pred HHHHHH--HcCCCEEEEeCCchHHHHHHH-HHH-----HhCCCEEEEeCCCCcCCCCC-------CC-------------
Confidence 334444 36899999994 666564333 222 24899986644431100000 00
Q ss_pred cccccchhhhhhhh-hhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCc-cCCCCCCCCcchhhhccCcc
Q 004879 530 NSAHDRINPLKGAI-VFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGI-DTDAWNPATDTFLKVQYNAN 607 (725)
Q Consensus 530 ~~~~~~in~~k~ai-~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGI-D~~~f~P~~d~~l~~~ys~~ 607 (725)
... ..+..+ ..||.++++|+..++.+... | .++.++++++||+ |...+.+.
T Consensus 130 ---~~~--~~r~~~~~~ad~~~~~s~~~~~~l~~~----G------~~~~~I~vign~~~d~~~~~~~------------ 182 (365)
T TIGR00236 130 ---PEE--INRQLTGHIADLHFAPTEQAKDNLLRE----N------VKADSIFVTGNTVIDALLTNVE------------ 182 (365)
T ss_pred ---ccH--HHHHHHHHHHHhccCCCHHHHHHHHHc----C------CCcccEEEeCChHHHHHHHHHh------------
Confidence 000 112222 24899999999999888752 2 2467899999996 43222110
Q ss_pred cccchhhhHHHHHHHcCCCCCCCCCCEEEEee-cC-cCCCCHHHHHHHHHHhhc--CCcEEEEEcCCCcc--c-ccH---
Q 004879 608 DLQGKAENKESIRKHLGLSSADARKPLVGCIT-RL-VPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVP--H-IQV--- 677 (725)
Q Consensus 608 d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVG-RL-~~qKGvdlLieA~~~L~~--~~iqLVIvG~Gp~~--~-le~--- 677 (725)
...+..+++.+|.. .+++++.+ |. ...||+..+++|+..+.+ .++++++.|.+... . +.+
T Consensus 183 -----~~~~~~~~~~~~~~-----~~~vl~~~hr~~~~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~~~~~~~ 252 (365)
T TIGR00236 183 -----IAYSSPVLSEFGED-----KRYILLTLHRRENVGEPLENIFKAIREIVEEFEDVQIVYPVHLNPVVREPLHKHLG 252 (365)
T ss_pred -----hccchhHHHhcCCC-----CCEEEEecCchhhhhhHHHHHHHHHHHHHHHCCCCEEEEECCCChHHHHHHHHHhC
Confidence 00123455666632 35555555 54 356999999999998864 37889888654211 0 100
Q ss_pred ----------------HHHHHhcCeEEEcCCcccchHHHHHHcCCCccccC
Q 004879 678 ----------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNN 712 (725)
Q Consensus 678 ----------------~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V~~ 712 (725)
..+|+.||+++.|| |.+++|||+++.||++
T Consensus 253 ~~~~v~~~~~~~~~~~~~~l~~ad~vv~~S-----g~~~~EA~a~g~PvI~ 298 (365)
T TIGR00236 253 DSKRVHLIEPLEYLDFLNLAANSHLILTDS-----GGVQEEAPSLGKPVLV 298 (365)
T ss_pred CCCCEEEECCCChHHHHHHHHhCCEEEECC-----hhHHHHHHHcCCCEEE
Confidence 17889999999998 6678999988877765
No 92
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=98.88 E-value=2.9e-08 Score=120.02 Aligned_cols=212 Identities=18% Similarity=0.226 Sum_probs=132.5
Q ss_pred CceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhh
Q 004879 461 QPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLK 540 (725)
Q Consensus 461 kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k 540 (725)
.-|+|=+||+|-.++ |.++... ..+.+|-|.+|-. ||...+..| +|. +- -+-
T Consensus 231 ~gD~VWVHDYHL~Ll-P~~LR~~----~p~~~IGfFlHiP-----FPs~Eifr~-LP~----------------r~-elL 282 (934)
T PLN03064 231 EGDVVWCHDYHLMFL-PKCLKEY----NSNMKVGWFLHTP-----FPSSEIHRT-LPS----------------RS-ELL 282 (934)
T ss_pred CCCEEEEecchhhHH-HHHHHHh----CCCCcEEEEecCC-----CCChHHHhh-CCc----------------HH-HHH
Confidence 448999999998888 5555432 3578999999964 333222111 111 01 123
Q ss_pred hhhhhccEEEEeCHHHHHHHHhhcc-CCCcccc---ccc--CCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhh
Q 004879 541 GAIVFSNIVTTVSPSYAQEVRTSEG-GQGLHST---LNF--HSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAE 614 (725)
Q Consensus 541 ~ai~~AD~VitVS~~~a~ev~~~~~-g~GL~~~---l~~--~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~ 614 (725)
.++-.||.|-+=+..|++.....-. -.|+... +.. ..-++.+.|-|||++.|.+... ..++ ..
T Consensus 283 ~glL~aDlIGFqT~~y~rhFl~~c~rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~--------~~~v---~~ 351 (934)
T PLN03064 283 RSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALE--------TPQV---QQ 351 (934)
T ss_pred HHHhcCCeEEeCCHHHHHHHHHHHHHHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhc--------ChhH---HH
Confidence 4566789998888888776543110 0122111 111 1223567799999987754310 0000 01
Q ss_pred hHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhcC--C--cEEEEE-------cCCCcc-cccH-----
Q 004879 615 NKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL--G--GQFILL-------GSSPVP-HIQV----- 677 (725)
Q Consensus 615 ~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~~--~--iqLVIv-------G~Gp~~-~le~----- 677 (725)
....+++.++ ++.+|+.|+|+.+.||+...+.|+.++++. . .+++++ |+++.. .++.
T Consensus 352 ~~~~lr~~~~------g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~ 425 (934)
T PLN03064 352 HIKELKERFA------GRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEI 425 (934)
T ss_pred HHHHHHHHhC------CceEEEEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHH
Confidence 1235677765 457999999999999999999999998752 2 235555 333321 1111
Q ss_pred ----------------------------HHHHHhcCeEEEcCCcccchHHHHHHcCC-----CccccCCCCCc
Q 004879 678 ----------------------------YPILLSSFSFLRKHIFNICNLYIKLGQGG-----DLTVNNNCEPW 717 (725)
Q Consensus 678 ----------------------------~~iyAaADIfVlPS~~EpfGLv~LEAMg~-----~~~V~~~~~G~ 717 (725)
..+|+.||++++||..|++++|.+|+|++ +..|.....|-
T Consensus 426 V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfaGa 498 (934)
T PLN03064 426 VGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFAGA 498 (934)
T ss_pred HHHHhhhccCCCcceEEEeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEEeCCCch
Confidence 08999999999999999999999999966 44454555543
No 93
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=98.87 E-value=6.2e-08 Score=107.54 Aligned_cols=191 Identities=10% Similarity=-0.029 Sum_probs=115.0
Q ss_pred HHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccc
Q 004879 450 AALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQD 529 (725)
Q Consensus 450 avlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d 529 (725)
.+...++ ..+||+|.+++..+..+ . +...+. ..++|+|+.+ .+ ..+++.+
T Consensus 80 ~~~~~l~--~~kPd~vi~~g~~~~~~--~-~a~aa~--~~gip~v~~i--~P-------~~waw~~-------------- 129 (385)
T TIGR00215 80 EVVQLAK--QAKPDLLVGIDAPDFNL--T-KELKKK--DPGIKIIYYI--SP-------QVWAWRK-------------- 129 (385)
T ss_pred HHHHHHH--hcCCCEEEEeCCCCccH--H-HHHHHh--hCCCCEEEEe--CC-------cHhhcCc--------------
Confidence 3444555 36899999999643332 2 211121 3589998544 11 1111100
Q ss_pred cccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccc
Q 004879 530 NSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDL 609 (725)
Q Consensus 530 ~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~ 609 (725)
. --+...+++|.|++++|...+.+.. . ..+..++.|++..... +.
T Consensus 130 ----~---~~r~l~~~~d~v~~~~~~e~~~~~~--~-----------g~~~~~vGnPv~~~~~-~~-------------- 174 (385)
T TIGR00215 130 ----W---RAKKIEKATDFLLAILPFEKAFYQK--K-----------NVPCRFVGHPLLDAIP-LY-------------- 174 (385)
T ss_pred ----c---hHHHHHHHHhHhhccCCCcHHHHHh--c-----------CCCEEEECCchhhhcc-cc--------------
Confidence 0 0234456789999999987665442 1 1355567777643211 10
Q ss_pred cchhhhHHHHHHHcCCCCCCCCCCEEEEe--ecCcC-CCCHHHHHHHHHHhhc--CCcEEEEEc-CCCcc-ccc------
Q 004879 610 QGKAENKESIRKHLGLSSADARKPLVGCI--TRLVP-QKGVHLIRHAIYRTLE--LGGQFILLG-SSPVP-HIQ------ 676 (725)
Q Consensus 610 ~gK~~~K~aLRk~lGL~~~d~~~plV~fV--GRL~~-qKGvdlLieA~~~L~~--~~iqLVIvG-~Gp~~-~le------ 676 (725)
...+...|+.+|+++ +.++|++. ||..+ .|++..+++|+..+.+ .+.++++.| ++... .++
T Consensus 175 ---~~~~~~~r~~lgl~~---~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~~~~~~~~~~~~ 248 (385)
T TIGR00215 175 ---KPDRKSAREKLGIDH---NGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKRRLQFEQIKAEY 248 (385)
T ss_pred ---CCCHHHHHHHcCCCC---CCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHHHh
Confidence 012445688899873 56777654 38777 8999999999998865 367887654 33211 110
Q ss_pred ------------HHHHHHhcCeEEEcCCcccchHHHHHHcCCCcc--ccCCCCC
Q 004879 677 ------------VYPILLSSFSFLRKHIFNICNLYIKLGQGGDLT--VNNNCEP 716 (725)
Q Consensus 677 ------------~~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~--V~~~~~G 716 (725)
...+|++||++|++| |.+.+|||+++.| ++..++.
T Consensus 249 ~~~~~v~~~~~~~~~~l~aADl~V~~S-----Gt~tlEa~a~G~P~Vv~yk~~p 297 (385)
T TIGR00215 249 GPDLQLHLIDGDARKAMFAADAALLAS-----GTAALEAALIKTPMVVGYRMKP 297 (385)
T ss_pred CCCCcEEEECchHHHHHHhCCEEeecC-----CHHHHHHHHcCCCEEEEEcCCH
Confidence 117999999999999 8888899955544 5555543
No 94
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.77 E-value=1.1e-07 Score=107.50 Aligned_cols=313 Identities=15% Similarity=0.113 Sum_probs=170.6
Q ss_pred CCCCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHH---------CCCeEEEEeeCCCCCcccc-----cccccc-cce
Q 004879 328 SISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQK---------KGHLVEIVLPKYDCMQYDR-----IDDLRA-LDV 392 (725)
Q Consensus 328 ~~~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~---------~GHeV~VItP~y~~l~~~~-----v~~L~~-l~~ 392 (725)
+.++.++++++.++. +.||...-+-+-+-+++. .||+|.+++-.+..+...- ...+.. ..+
T Consensus 30 ~~~~~~~~~~~~~~~----~~gg~er~~v~~~~~l~s~~~~lg~~d~G~qV~~l~~h~~al~~~~~~~~~~~~l~~~~~i 105 (495)
T KOG0853|consen 30 PEKPFEHVTFIHPDL----GIGGAERLVVDAAVHLLSGQDVLGLPDTGGQVVYLTSHEDALEMPLLLRCFAETLDGTPPI 105 (495)
T ss_pred ccccchhheeecccc----ccCchHHHhHHHHHHHHhcccccCCCCCCceEEEEehhhhhhcchHHHHHHHHHhcCCCce
Confidence 356778999987653 579999999999999999 9999999997655442100 011111 122
Q ss_pred eeeeccCCcceeeeeEee--eeCCeeEEEeCCCCCCcccccC-CCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECC
Q 004879 393 VVESYFDGRLFKNKVWVS--TIEGLPVYFIEPHHPDKFFWRG-QFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHD 469 (725)
Q Consensus 393 ~i~~~f~g~~~~~rV~~~--~v~GI~V~~I~~~~ps~~F~r~-~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hd 469 (725)
.+.+++--+... ..+.. ...++.+.++... + .|... .++.. ..-|..++..++++.+. ||++|-|.
T Consensus 106 ~vv~~~lP~~~~-~~~~~~~~~~~~~il~~~~~-~--~~k~~~~~d~~------i~d~~~~~~~l~~~~~~-p~~~~~i~ 174 (495)
T KOG0853|consen 106 LVVGDWLPRAMG-QFLEQVAGCAYLRILRIPFG-I--LFKWAEKVDPI------IEDFVSACVPLLKQLSG-PDVIIKIY 174 (495)
T ss_pred EEEEeecCcccc-hhhhhhhccceeEEEEeccc-h--hhhhhhhhcee------ecchHHHHHHHHHHhcC-CcccceeE
Confidence 222221000000 00000 1123333333210 0 00000 00100 01134555566665544 99999999
Q ss_pred CchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEE
Q 004879 470 WQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIV 549 (725)
Q Consensus 470 w~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~V 549 (725)
|.+.+.+.++.. ..+++-+++-|.++..-.. ....++.+
T Consensus 175 ~~~h~~~~lla~------r~g~~~~l~~~~l~~~e~e-----------------------------------~~~~~~~~ 213 (495)
T KOG0853|consen 175 FYCHFPDSLLAK------RLGVLKVLYRHALDKIEEE-----------------------------------TTGLAWKI 213 (495)
T ss_pred EeccchHHHhcc------ccCccceeehhhhhhhhhh-----------------------------------hhhccceE
Confidence 988886554432 2467888888865411000 01123445
Q ss_pred EEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCC
Q 004879 550 TTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSAD 629 (725)
Q Consensus 550 itVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d 629 (725)
++.|...+....... .+....++.+.+.+||.+.+.|. .|.+ +.+.+...|...|...
T Consensus 214 ~~ns~~~~~~f~~~~--------~~L~~~d~~~~y~ei~~s~~~~~-------~~~~-----~~~~~~~~r~~~~v~~-- 271 (495)
T KOG0853|consen 214 LVNSYFTKRQFKATF--------VSLSNSDITSTYPEIDGSWFTYG-------QYES-----HLELRLPVRLYRGVSG-- 271 (495)
T ss_pred ecchhhhhhhhhhhh--------hhcCCCCcceeeccccchhcccc-------cccc-----chhcccccceeeeecc--
Confidence 555544443333211 11123347888899998766652 1111 1122233344455542
Q ss_pred CCCCEEEEeecCcCCCCHHHHHHHHHHhhcC-------CcEEEEEcC-CCcc-------cccH-----------------
Q 004879 630 ARKPLVGCITRLVPQKGVHLIRHAIYRTLEL-------GGQFILLGS-SPVP-------HIQV----------------- 677 (725)
Q Consensus 630 ~~~plV~fVGRL~~qKGvdlLieA~~~L~~~-------~iqLVIvG~-Gp~~-------~le~----------------- 677 (725)
...++.-+-|+.|.||++++++|+..+... ..+++++|+ |.+. ++++
T Consensus 272 -~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~~v~~ 350 (495)
T KOG0853|consen 272 -IDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQFVWF 350 (495)
T ss_pred -cceEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccCceEEE
Confidence 356788899999999999999999887642 457888883 2221 1111
Q ss_pred -------HHHHHhcCe---EEEcCCcccchHHHHHHcC-----------C-CccccCCCCCceee
Q 004879 678 -------YPILLSSFS---FLRKHIFNICNLYIKLGQG-----------G-DLTVNNNCEPWLHH 720 (725)
Q Consensus 678 -------~~iyAaADI---fVlPS~~EpfGLv~LEAMg-----------~-~~~V~~~~~G~l~~ 720 (725)
+.++.+||. ++-|.. |+||+|.+|||. + .++|.+++||||..
T Consensus 351 ~~s~~~~~~yrl~adt~~v~~qPa~-E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~~~tG~l~d 414 (495)
T KOG0853|consen 351 LPSTTRVAKYRLAADTKGVLYQPAN-EHFGIVPIEAMACGLPVVATNNGGPAEIVVHGVTGLLID 414 (495)
T ss_pred ecCCchHHHHHHHHhcceEEecCCC-CCccceeHHHHhcCCCEEEecCCCceEEEEcCCcceeeC
Confidence 144555554 333666 999999999993 2 25567788888753
No 95
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.75 E-value=1.6e-07 Score=95.20 Aligned_cols=135 Identities=24% Similarity=0.338 Sum_probs=97.0
Q ss_pred hccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcC
Q 004879 545 FSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLG 624 (725)
Q Consensus 545 ~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lG 624 (725)
.++.+++.|+........ .+ ...++..+|||++...+.+. ..+
T Consensus 150 ~~~~~~~~~~~~~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~--------------------------~~~ 192 (381)
T COG0438 150 LADRVIAVSPALKELLEA-LG----------VPNKIVVIPNGIDTEKFAPA--------------------------RIG 192 (381)
T ss_pred cccEEEECCHHHHHHHHH-hC----------CCCCceEecCCcCHHHcCcc--------------------------ccC
Confidence 467888898776443332 11 12378899999999877652 111
Q ss_pred CCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhcC--CcEEEEEcCCCcc--cc-------------------c-H--H
Q 004879 625 LSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL--GGQFILLGSSPVP--HI-------------------Q-V--Y 678 (725)
Q Consensus 625 L~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~~--~iqLVIvG~Gp~~--~l-------------------e-~--~ 678 (725)
+.. +.....++++||+.+.||++.+++|+..+.+. +++++++|.|+.. .+ . . .
T Consensus 193 ~~~-~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 271 (381)
T COG0438 193 LLP-EGGKFVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGPERREELEKLAKKLGLEDNVKFLGYVPDEELA 271 (381)
T ss_pred CCc-ccCceEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcCCCccHHHHHHHHHHhCCCCcEEEecccCHHHHH
Confidence 211 11126899999999999999999999998764 2799999998752 10 0 0 1
Q ss_pred HHHHhcCeEEEcCCcccchHHHHHHcCCCcccc-CCCCCc
Q 004879 679 PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVN-NNCEPW 717 (725)
Q Consensus 679 ~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V~-~~~~G~ 717 (725)
.+++.||++++||.+|+||++++|||+++.||+ ++++|+
T Consensus 272 ~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~~~ 311 (381)
T COG0438 272 ELLASADVFVLPSLSEGFGLVLLEAMAAGTPVIASDVGGI 311 (381)
T ss_pred HHHHhCCEEEeccccccchHHHHHHHhcCCcEEECCCCCh
Confidence 688889999999999999999999997777754 444444
No 96
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=98.68 E-value=9e-07 Score=89.04 Aligned_cols=179 Identities=17% Similarity=0.179 Sum_probs=111.9
Q ss_pred eEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeC
Q 004879 334 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 413 (725)
Q Consensus 334 kILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~ 413 (725)
||.+|.+--.|. .-||.++.+.+|+..|.++||+|+|.+........ . ....
T Consensus 3 kIaIiGtrGIPa-~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~-----~----------------------~~y~ 54 (185)
T PF09314_consen 3 KIAIIGTRGIPA-RYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYK-----E----------------------FEYN 54 (185)
T ss_pred eEEEEeCCCCCc-ccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCC-----C----------------------cccC
Confidence 799999998886 68999999999999999999999999865322110 0 0124
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHH---HHHHcCCCceEEEECCCc-hhhHHHHHHHhhccCCCC
Q 004879 414 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALE---LLLQAGKQPDIIHCHDWQ-TAFVAPLYWDLYVPKGLN 489 (725)
Q Consensus 414 GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~Fsravle---lL~~~~~kPDIIH~Hdw~-sa~vapl~~~~ya~~gl~ 489 (725)
|+....++.+ . . | ....+.|...++.. +.+....+.||+|+|..- .+++.|+. ..+. ..
T Consensus 55 gv~l~~i~~~--~----~----g---~~~si~yd~~sl~~al~~~~~~~~~~~ii~ilg~~~g~~~~~~~-r~~~---~~ 117 (185)
T PF09314_consen 55 GVRLVYIPAP--K----N----G---SAESIIYDFLSLLHALRFIKQDKIKYDIILILGYGIGPFFLPFL-RKLR---KK 117 (185)
T ss_pred CeEEEEeCCC--C----C----C---chHHHHHHHHHHHHHHHHHhhccccCCEEEEEcCCccHHHHHHH-Hhhh---hc
Confidence 5555555421 0 1 1 01222332333333 333334568999999876 34443332 2221 13
Q ss_pred CCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCc
Q 004879 490 SARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGL 569 (725)
Q Consensus 490 ~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL 569 (725)
+.|++.++|+.+... .++. ..... +- ...++.++++||.+|+-|+...+.+.+.+ +
T Consensus 118 g~~v~vN~DGlEWkR----~KW~---~~~k~------------~l-k~~E~~avk~ad~lIaDs~~I~~y~~~~y-~--- 173 (185)
T PF09314_consen 118 GGKVVVNMDGLEWKR----AKWG---RPAKK------------YL-KFSEKLAVKYADRLIADSKGIQDYIKERY-G--- 173 (185)
T ss_pred CCcEEECCCcchhhh----hhcC---HHHHH------------HH-HHHHHHHHHhCCEEEEcCHHHHHHHHHHc-C---
Confidence 679999999987432 1111 11010 00 12357788999999999999988887742 1
Q ss_pred ccccccCCCcEEEEeCCcc
Q 004879 570 HSTLNFHSKKFVGILNGID 588 (725)
Q Consensus 570 ~~~l~~~~~Kv~vIpNGID 588 (725)
..+...||+|-|
T Consensus 174 -------~~~s~~IaYGad 185 (185)
T PF09314_consen 174 -------RKKSTFIAYGAD 185 (185)
T ss_pred -------CCCcEEecCCCC
Confidence 367889999976
No 97
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.58 E-value=1.7e-06 Score=80.97 Aligned_cols=138 Identities=23% Similarity=0.376 Sum_probs=80.5
Q ss_pred eEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeC
Q 004879 334 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 413 (725)
Q Consensus 334 kILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~ 413 (725)
||++++..+ ..++..+++.|.+.|++|+|+++..+.... ...+
T Consensus 1 KIl~i~~~~---------~~~~~~~~~~L~~~g~~V~ii~~~~~~~~~----------------------------~~~~ 43 (139)
T PF13477_consen 1 KILLIGNTP---------STFIYNLAKELKKRGYDVHIITPRNDYEKY----------------------------EIIE 43 (139)
T ss_pred CEEEEecCc---------HHHHHHHHHHHHHCCCEEEEEEcCCCchhh----------------------------hHhC
Confidence 688887643 357889999999999999999985432110 0134
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCch-hhHHHHHHHhhccCCCCCCc
Q 004879 414 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQT-AFVAPLYWDLYVPKGLNSAR 492 (725)
Q Consensus 414 GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~s-a~vapl~~~~ya~~gl~~ip 492 (725)
|+.++.++. + . + .. +..+.+ .....+++ ..+|||||||...+ ++++.++ +.. ...+|
T Consensus 44 ~i~~~~~~~--~---~-k-~~------~~~~~~--~~l~k~ik--~~~~DvIh~h~~~~~~~~~~l~-~~~----~~~~~ 101 (139)
T PF13477_consen 44 GIKVIRLPS--P---R-K-SP------LNYIKY--FRLRKIIK--KEKPDVIHCHTPSPYGLFAMLA-KKL----LKNKK 101 (139)
T ss_pred CeEEEEecC--C---C-C-cc------HHHHHH--HHHHHHhc--cCCCCEEEEecCChHHHHHHHH-HHH----cCCCC
Confidence 566665531 0 0 0 00 001111 12334444 35899999998765 5554333 221 12489
Q ss_pred EEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeC
Q 004879 493 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVS 553 (725)
Q Consensus 493 iV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS 553 (725)
+|+|.|+.++... +... .-.-.+.+.+++.||.|++.|
T Consensus 102 ~i~~~hg~~~~~~-~~~~----------------------~~~~~~~~~~~k~~~~ii~~~ 139 (139)
T PF13477_consen 102 VIYTVHGSDFYNS-SKKK----------------------KLKKFIIKFAFKRADKIIVQS 139 (139)
T ss_pred EEEEecCCeeecC-CchH----------------------HHHHHHHHHHHHhCCEEEEcC
Confidence 9999998753111 1000 001235677888999999876
No 98
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=98.57 E-value=5e-07 Score=106.19 Aligned_cols=361 Identities=19% Similarity=0.189 Sum_probs=215.2
Q ss_pred EEEEcCcc-----CCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCc--ccc------------------ccccc-
Q 004879 335 VIHIAAEM-----APVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQ--YDR------------------IDDLR- 388 (725)
Q Consensus 335 ILhIs~E~-----~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~--~~~------------------v~~L~- 388 (725)
+.+.+.|+ -|.- .||+|+......+.++..|.-.+.+.-.|...- +.. ++-.+
T Consensus 97 ~~~~~~e~~~~e~~p~l-gGGLGrLAgcfldS~a~Lg~P~~G~Gl~Y~~GyF~Q~~~dG~Q~E~p~~w~~~~~pwe~~r~ 175 (750)
T COG0058 97 LGYFLMEFGEHESDPGL-GGGLGRLAGCFLDSAADLGLPLTGYGLRYRYGYFRQSDVDGWQVELPDEWLKYGNPWEFLRD 175 (750)
T ss_pred hhccHHHHhhcccCccc-cccHHHHHHhHHHHHHhcCCCceEEEeeecCCceeeeccCCceEecchhhhccCCcceeecc
Confidence 45555554 3543 499999999999999999999988886665431 100 00001
Q ss_pred ----ccceeeeeccCCcceeeeeEeeeeCCeeEEEeCCCCCCc-cccc---CCCCCCCc-hhhh---HHHHHHHHHHHHH
Q 004879 389 ----ALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDK-FFWR---GQFYGEHD-DFRR---FSFFSRAALELLL 456 (725)
Q Consensus 389 ----~l~~~i~~~f~g~~~~~rV~~~~v~GI~V~~I~~~~ps~-~F~r---~~~Yg~~d-d~~r---~~~FsravlelL~ 456 (725)
..++++.. +++.....++|...+..+++++.+...|+. ...+ ...|+. | ...| ..+|+.+.++.|.
T Consensus 176 ~~a~~~d~~V~g-~~~~~~~lrlW~a~~~~~~~~l~~~n~~e~~~~~~~iT~~LYp~-Ds~elRl~Qeyfl~~agvq~I~ 253 (750)
T COG0058 176 AEGVPYDVPVPG-YDNRVVTLRLWQAQVGRVPLYLLDFNVGENKNDARNITRVLYPG-DSKELRLKQEYFLGSAGVQDIL 253 (750)
T ss_pred cCCceeeeeEEe-ccCcEEEEEEEEEecCccceEeecCCCcccchhhhhHHhhcCCC-CcHHHHHhhhheeeeHHHHHHH
Confidence 12222222 232455678898887788999887655421 1111 135653 2 2223 4457888888777
Q ss_pred HcC------CCceEEEECCCchhhHHHHHHHhhccC-C--------CCCCcEEEEeeCCcccC--CCChhhhhhc-----
Q 004879 457 QAG------KQPDIIHCHDWQTAFVAPLYWDLYVPK-G--------LNSARVCFTCHNFEYQG--TAPAKELASC----- 514 (725)
Q Consensus 457 ~~~------~kPDIIH~Hdw~sa~vapl~~~~ya~~-g--------l~~ipiV~TiHn~~~qg--~~p~~~l~~~----- 514 (725)
+.+ ..+-+-|.++-|++++.+-........ | ....-++||.|+.-..| .+|.+.+...
T Consensus 254 ~~~~~~~~~~~~~~~~lNdtHpa~~i~ElmRll~d~~g~~~~~A~~~~~~~~~yTnHTplpeale~wp~~l~~~~lpr~~ 333 (750)
T COG0058 254 ARGHLEHHDLDVLADHLNDTHPALAIPELMRLLIDEEGLSWDEAWEIVRKTFVYTNHTPLPEALETWPVELFKKLLPRHL 333 (750)
T ss_pred HHhhhccccccchhhhhcCCChhHhHHHHHHHHHHHhcCCHHHHHHHHhheeeeecCCCchhhhccCCHHHHHHHhhhhh
Confidence 654 677888999999998876655421111 1 13456899999984333 3454433211
Q ss_pred CCcc---------cccCCcc-cccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEe
Q 004879 515 GLDV---------QQLNRPD-RMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGIL 584 (725)
Q Consensus 515 Gl~~---------~~l~~~~-~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIp 584 (725)
++.. .....+. ....-....-++|--.+++.|..|..||.-+.+-+.+..+. ..-...+.|+.-+.
T Consensus 334 ~ii~~in~~~l~~~~~~~~~~~~~~~~~i~~v~Ma~lal~~S~~vNGVsklH~el~k~~~~~----~~~~~~p~~i~nvT 409 (750)
T COG0058 334 QIIYEINARFLPEVRLLYLGDLIRRGSPIEEVNMAVLALVGSHSVNGVSKLHSELSKKMWFA----DFHGLYPEKINNVT 409 (750)
T ss_pred hhHHHHHhhhhHHHHhhccccccccCCcccceehhhhhhhhhhhhHhHHHHHHHHHHHHHHH----HhcccCcccccccc
Confidence 0000 0000000 00000001116677788999999999998887766543321 00012367899999
Q ss_pred CCccCCCCC-CCCcchhhhccCcc--------------------c------c-cchhhhHHHH----HHHcCCCCCCCCC
Q 004879 585 NGIDTDAWN-PATDTFLKVQYNAN--------------------D------L-QGKAENKESI----RKHLGLSSADARK 632 (725)
Q Consensus 585 NGID~~~f~-P~~d~~l~~~ys~~--------------------d------~-~gK~~~K~aL----Rk~lGL~~~d~~~ 632 (725)
|||...+|- |+. +.+...++.. + + .-|..+|..+ ..+.|+. .+++.
T Consensus 410 NGIt~rrWl~~~n-~~L~~~~~~~ig~~W~~~~~~l~~l~~~a~~~~~~e~i~~iK~~nk~~La~~i~~~~gi~-~~p~~ 487 (750)
T COG0058 410 NGITPRRWLAPAN-PGLADLLDEKIGDEWLNDLDILDELLWFADDKAFRELIAEIKRENKKRLAEEIADRTGIE-VDPNA 487 (750)
T ss_pred CCcCCchhhhhhh-HHHHHHHhhhhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCc-cCCCc
Confidence 999999994 432 2222222211 0 0 1233344332 3356765 46788
Q ss_pred CEEEEeecCcCCCCHHHHHHHHHHhh---c----CCcEEEEEcCCCccc------ccH----------------------
Q 004879 633 PLVGCITRLVPQKGVHLIRHAIYRTL---E----LGGQFILLGSSPVPH------IQV---------------------- 677 (725)
Q Consensus 633 plV~fVGRL~~qKGvdlLieA~~~L~---~----~~iqLVIvG~Gp~~~------le~---------------------- 677 (725)
..++++-|++++|..++.+.-+.++. . +.+++|+.|.....+ ++.
T Consensus 488 lfd~~~kRiheYKRq~Lnl~~i~~ly~~i~~d~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVvFl~nYdv 567 (750)
T COG0058 488 LFDGQARRIHEYKRQLLNLLDIERLYRILKEDWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVVFLPNYDV 567 (750)
T ss_pred ceeeeehhhhhhhhhHHhHhhHHHHHHHHhcCCCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEEEeCCCCh
Confidence 99999999999999998766554433 2 346778888653221 110
Q ss_pred ---HHHHHhcCeEEEcCC--cccchHHHHHHc
Q 004879 678 ---YPILLSSFSFLRKHI--FNICNLYIKLGQ 704 (725)
Q Consensus 678 ---~~iyAaADIfVlPS~--~EpfGLv~LEAM 704 (725)
+.++.+||+-..-|. .|++|.+-|-||
T Consensus 568 slA~~iipa~Dvweqis~a~~EASGTsnMK~a 599 (750)
T COG0058 568 SLAELLIPAADVWEQIPTAGKEASGTSNMKAA 599 (750)
T ss_pred hHHHhhcccccccccCCCCCccccCcCcchHH
Confidence 189999999999887 799999999987
No 99
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=98.51 E-value=1.8e-06 Score=93.64 Aligned_cols=177 Identities=13% Similarity=0.002 Sum_probs=99.6
Q ss_pred CCCc-eEEEECCCchh-h-HHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccc
Q 004879 459 GKQP-DIIHCHDWQTA-F-VAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDR 535 (725)
Q Consensus 459 ~~kP-DIIH~Hdw~sa-~-vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~ 535 (725)
+.+| |+||+|.+... + ....+..... . .++|+|+++|+..... .. .. . . .
T Consensus 61 ~~~~~Dvv~~~~P~~~~~~~~~~~~~~~k--~-~~~k~i~~ihD~~~~~-~~-----~~----~------------~--~ 113 (333)
T PRK09814 61 SLKPGDIVIFQFPTWNGFEFDRLFVDKLK--K-KQVKIIILIHDIEPLR-FD-----SN----Y------------Y--L 113 (333)
T ss_pred cCCCCCEEEEECCCCchHHHHHHHHHHHH--H-cCCEEEEEECCcHHHh-cc-----cc----c------------h--h
Confidence 3567 99999975321 1 1111222211 1 3799999999974221 00 00 0 0 0
Q ss_pred hhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhh
Q 004879 536 INPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAEN 615 (725)
Q Consensus 536 in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~ 615 (725)
..+++..++.||.|+++|+.+++.+... |+ ...++.+++|..+.....+
T Consensus 114 ~~~~~~~~~~aD~iI~~S~~~~~~l~~~----g~------~~~~i~~~~~~~~~~~~~~--------------------- 162 (333)
T PRK09814 114 MKEEIDMLNLADVLIVHSKKMKDRLVEE----GL------TTDKIIVQGIFDYLNDIEL--------------------- 162 (333)
T ss_pred hHHHHHHHHhCCEEEECCHHHHHHHHHc----CC------CcCceEecccccccccccc---------------------
Confidence 2345777889999999999999888652 21 2456655554432210000
Q ss_pred HHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhcCCcEEEEEcCCCccc-c----------cHH---HHH
Q 004879 616 KESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPVPH-I----------QVY---PIL 681 (725)
Q Consensus 616 K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~~~iqLVIvG~Gp~~~-l----------e~~---~iy 681 (725)
+. .+ ...+.|+|+||+....++ .+ ...+++|+++|+|+... . ..+ .+|
T Consensus 163 ----~~---~~---~~~~~i~yaG~l~k~~~l---~~-----~~~~~~l~i~G~g~~~~~~~~~V~f~G~~~~eel~~~l 224 (333)
T PRK09814 163 ----VK---TP---SFQKKINFAGNLEKSPFL---KN-----WSQGIKLTVFGPNPEDLENSANISYKGWFDPEELPNEL 224 (333)
T ss_pred ----cc---cc---cCCceEEEecChhhchHH---Hh-----cCCCCeEEEECCCccccccCCCeEEecCCCHHHHHHHH
Confidence 00 01 134689999999944321 11 22578999999998541 1 111 567
Q ss_pred HhcCeEEEcCCc-----------ccchHHHHHHcCCCccccC
Q 004879 682 LSSFSFLRKHIF-----------NICNLYIKLGQGGDLTVNN 712 (725)
Q Consensus 682 AaADIfVlPS~~-----------EpfGLv~LEAMg~~~~V~~ 712 (725)
+. |+.+++... -.+|.-..++|+++.||+.
T Consensus 225 ~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~ 265 (333)
T PRK09814 225 SK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIV 265 (333)
T ss_pred hc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEE
Confidence 76 766654321 2456667778877777653
No 100
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.43 E-value=8e-06 Score=97.37 Aligned_cols=255 Identities=19% Similarity=0.170 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHH-HHc--------CC-CceEEEECCCchhhHHHHHHHhhcc-CC--------CCCCcEEEEeeCCcccC
Q 004879 444 FSFFSRAALELL-LQA--------GK-QPDIIHCHDWQTAFVAPLYWDLYVP-KG--------LNSARVCFTCHNFEYQG 504 (725)
Q Consensus 444 ~~~FsravlelL-~~~--------~~-kPDIIH~Hdw~sa~vapl~~~~ya~-~g--------l~~ipiV~TiHn~~~qg 504 (725)
-.+|+.+.++.+ +.. +. ++.+||.++-|++++.|-+...... .+ ....-+++|.|+.-..+
T Consensus 273 eyfl~sag~qdilr~~~~~~~~~~~l~~~~~ihlNDtHpalai~ElmR~L~d~~gl~w~~Aw~i~~~~~~yTnHT~lpea 352 (797)
T cd04300 273 QYFFVSASLQDIIRRFKKTHGPLSEFPDKVAIQLNDTHPALAIPELMRILVDEEGLDWDEAWDITTKTFAYTNHTLLPEA 352 (797)
T ss_pred HHHHhhhHHHHHHHHHHHhCCChhhCCCceEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhheeeecCCCchHH
Confidence 345777777654 332 12 7899999999998876666543321 01 23567999999984322
Q ss_pred --CCChhhhhhc-----------------------CCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHH
Q 004879 505 --TAPAKELASC-----------------------GLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE 559 (725)
Q Consensus 505 --~~p~~~l~~~-----------------------Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~e 559 (725)
.+|.+.+..+ +.+.+.+.++..+.+. ....++|-..++..|..|..||.-+.+-
T Consensus 353 lE~wp~~l~~~~lpr~~~II~~In~~~~~~~~~~~~~~~~~~~~l~ii~~~-~~~~v~Ma~LAi~~S~~vNGVS~lH~ei 431 (797)
T cd04300 353 LEKWPVDLFERLLPRHLEIIYEINRRFLEEVRAKYPGDEDRIRRMSIIEEG-GEKQVRMAHLAIVGSHSVNGVAALHSEL 431 (797)
T ss_pred hCccCHHHHHHHChHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhcccccC-CCCEEehHHHHHhcCcchhhhHHHHHHH
Confidence 3444433211 1111111122222211 1235788889999999999999877665
Q ss_pred HHhhccCCCcccccccCCCcEEEEeCCccCCCCC----CCCcchhhhccC----------------ccc-------ccch
Q 004879 560 VRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWN----PATDTFLKVQYN----------------AND-------LQGK 612 (725)
Q Consensus 560 v~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~----P~~d~~l~~~ys----------------~~d-------~~gK 612 (725)
+.+..+ ..+-...+.|+.-+.|||...+|- |.....+..... ++| .+-|
T Consensus 432 ~k~~~~----~df~~l~P~kf~n~TNGVt~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~l~~~K 507 (797)
T cd04300 432 LKETVF----KDFYELYPEKFNNKTNGITPRRWLLQANPGLSALITETIGDDWVTDLDQLKKLEPFADDPAFLKEFRAIK 507 (797)
T ss_pred HHHhhH----HHHHhhCCCccCCcCCCCCcchhhhhcCHHHHHHHHHhcCchhhhChHHHHHHHhcCCCHHHHHHHHHHH
Confidence 554311 001113467888999999999885 322222221111 112 1345
Q ss_pred hhhHHHH----HHHcCCCCCCCCCCEEEEeecCcCCCCHHH-HHHHHHHhh---cC------CcEEEEEcCCCccc----
Q 004879 613 AENKESI----RKHLGLSSADARKPLVGCITRLVPQKGVHL-IRHAIYRTL---EL------GGQFILLGSSPVPH---- 674 (725)
Q Consensus 613 ~~~K~aL----Rk~lGL~~~d~~~plV~fVGRL~~qKGvdl-LieA~~~L~---~~------~iqLVIvG~Gp~~~---- 674 (725)
..+|..| +++.|+. .+++....+++-|+..+|...+ +++.+.+.. .. +.+||+.|.....+
T Consensus 508 ~~nK~~L~~~i~~~~g~~-ldp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK 586 (797)
T cd04300 508 QANKERLAAYIKKTTGVE-VDPDSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAAPGYYMAK 586 (797)
T ss_pred HHHHHHHHHHHHHHhCCc-cCCCccEEEEeeechhhhhhhhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccCCCCcHHHH
Confidence 5566544 5677876 5778899999999999999999 777766543 21 36788999643221
Q ss_pred --cc------H-------------------------HHHHHhcCeEEEcCC--cccchHHHHHHc
Q 004879 675 --IQ------V-------------------------YPILLSSFSFLRKHI--FNICNLYIKLGQ 704 (725)
Q Consensus 675 --le------~-------------------------~~iyAaADIfVlPS~--~EpfGLv~LEAM 704 (725)
++ + +.++.|||+...-|. .|++|.+-|-+|
T Consensus 587 ~iIklI~~va~~in~Dp~v~~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~ 651 (797)
T cd04300 587 LIIKLINAVADVVNNDPDVGDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFM 651 (797)
T ss_pred HHHHHHHHHHHHhccChhcCCceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHH
Confidence 10 0 189999999999887 799999999987
No 101
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=98.41 E-value=1.6e-06 Score=102.71 Aligned_cols=252 Identities=15% Similarity=0.133 Sum_probs=155.4
Q ss_pred HHHHHHHHHH-HHHH-------c-CC-CceEEEECCCchhhHHHHHHHhhccC-C--------CCCCcEEEEeeCCcccC
Q 004879 444 FSFFSRAALE-LLLQ-------A-GK-QPDIIHCHDWQTAFVAPLYWDLYVPK-G--------LNSARVCFTCHNFEYQG 504 (725)
Q Consensus 444 ~~~Fsravle-lL~~-------~-~~-kPDIIH~Hdw~sa~vapl~~~~ya~~-g--------l~~ipiV~TiHn~~~qg 504 (725)
-.+|+.+.+. .+++ . +. ++.+||+++-|++++.|-+...+... + ..+.-++||.|+.-..+
T Consensus 275 Eyfl~sa~vqdilr~~~~~~~~l~~l~~~~~ihlNDtHpalai~ElmR~L~d~~gl~wd~Aw~iv~~~~~yTnHT~lpea 354 (798)
T PRK14985 275 QYFQCACSVADILRRHHLAGRKLHELPDYEVIQLNDTHPTIAIPELLRVLLDEHQLSWDDAWAITSKTFAYTNHTLMPEA 354 (798)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhCCCCcEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHheeeecCCCChhh
Confidence 3457777666 4422 1 12 78899999999988766665433211 1 23567999999984333
Q ss_pred --CCChhhhhhc-C--------------------Cc--ccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHH
Q 004879 505 --TAPAKELASC-G--------------------LD--VQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE 559 (725)
Q Consensus 505 --~~p~~~l~~~-G--------------------l~--~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~e 559 (725)
.||.+.+..+ + .+ ...+.++..+. .+.++|-..++..|..|..||.-+.+-
T Consensus 355 lE~w~~~l~~~~Lpr~~~ii~~in~~fl~~~~~~~~~d~~~~~~~sii~----~~~v~Ma~LAi~~S~~vNGVS~lH~ei 430 (798)
T PRK14985 355 LECWDEKLVKSLLPRHMQIIKEINTRFKTLVEKTWPGDKKVWAKLAVVH----DKQVRMANLCVVSGFAVNGVAALHSDL 430 (798)
T ss_pred hCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCcHHHhhhhhhcc----CCeeehHHHHHHhcchhHhhHHHHhch
Confidence 3444332211 0 00 00001111111 235778888899999999999776554
Q ss_pred HHhhccCCCcccccccCCCcEEEEeCCccCCCC----CCCCcchhhhc-----------------cCcc-c-----ccch
Q 004879 560 VRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAW----NPATDTFLKVQ-----------------YNAN-D-----LQGK 612 (725)
Q Consensus 560 v~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f----~P~~d~~l~~~-----------------ys~~-d-----~~gK 612 (725)
+.+.-+. .+-...+.++.-|.|||....| +|.....+... +..| + .+-|
T Consensus 431 l~~~~f~----df~~l~p~kf~nvTNGVt~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~~~~vK 506 (798)
T PRK14985 431 VVKDLFP----EYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKTLKKEWANDLDQLINLEKYADDAAFRQQYREIK 506 (798)
T ss_pred hHHhhhh----hhHhhCCCccCCcCCCcCcchhhhhhCHHHHHHHHHhcCcchhhChHHHHHhhccCCcHHHHHHHHHHH
Confidence 3332110 0111236788899999999999 55332222211 1111 1 1334
Q ss_pred hhhHHHH----HHHcCCCCCCCCCCEEEEeecCcCCCCHHH-HHHHHHHhhc---------CCcEEEEEcCCCccc----
Q 004879 613 AENKESI----RKHLGLSSADARKPLVGCITRLVPQKGVHL-IRHAIYRTLE---------LGGQFILLGSSPVPH---- 674 (725)
Q Consensus 613 ~~~K~aL----Rk~lGL~~~d~~~plV~fVGRL~~qKGvdl-LieA~~~L~~---------~~iqLVIvG~Gp~~~---- 674 (725)
..+|..| +++.|+. .+++...++++-|++.+|...+ +++.+.++.+ .+.+||+.|.....+
T Consensus 507 ~~nK~~L~~~i~~~~g~~-ldp~slfdvq~kR~heYKRq~Lnil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK 585 (798)
T PRK14985 507 QANKVRLAEFVKQRTGIE-INPQAIFDVQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAK 585 (798)
T ss_pred HHHHHHHHHHHHHHhCCc-cCchhcchhhHhhhhhhhhhhhHhhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHH
Confidence 5555544 5677875 4678888999999999999999 8887766542 137899999743221
Q ss_pred --cc-------------------------------HHHHHHhcCeEEEcCC--cccchHHHHHHc
Q 004879 675 --IQ-------------------------------VYPILLSSFSFLRKHI--FNICNLYIKLGQ 704 (725)
Q Consensus 675 --le-------------------------------~~~iyAaADIfVlPS~--~EpfGLv~LEAM 704 (725)
++ .+.++.+||+...-|. .|++|.+-|-||
T Consensus 586 ~iIklI~~va~~in~Dp~v~~~lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~a 650 (798)
T PRK14985 586 NIIFAINKVAEVINNDPLVGDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLA 650 (798)
T ss_pred HHHHHHHHHHHHhcCChhhCCceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHH
Confidence 10 0189999999999887 799999999987
No 102
>PRK14986 glycogen phosphorylase; Provisional
Probab=98.34 E-value=5.9e-06 Score=98.43 Aligned_cols=254 Identities=17% Similarity=0.144 Sum_probs=153.8
Q ss_pred HHHHHHHHHHH-HH-------c-CC-CceEEEECCCchhhHHHHHHHhhccC-C--------CCCCcEEEEeeCCcccC-
Q 004879 445 SFFSRAALELL-LQ-------A-GK-QPDIIHCHDWQTAFVAPLYWDLYVPK-G--------LNSARVCFTCHNFEYQG- 504 (725)
Q Consensus 445 ~~FsravlelL-~~-------~-~~-kPDIIH~Hdw~sa~vapl~~~~ya~~-g--------l~~ipiV~TiHn~~~qg- 504 (725)
.+|+.+.++-+ ++ . +. .+-+||.++-|++++.+-+...+... + ..+.-++||.|+.-..|
T Consensus 287 yfl~~agv~di~r~~~~~~~~l~~l~~~v~ihlNDtHpa~~i~ElmR~L~d~~gl~~~eA~~iv~~~~~fTnHT~lpeal 366 (815)
T PRK14986 287 YFLVSATVQDILSRHYQLHKTYDNLADKIAIHLNDTHPVLSIPELMRLLIDEHKFSWDDAFEVCCQVFSYTNHTLMSEAL 366 (815)
T ss_pred HHhhhHHHHHHHHHHHHhCCCHhhCCcccEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhEEeecccCChHHh
Confidence 45777766633 11 1 12 45699999999998876665433211 1 24567999999984333
Q ss_pred -CCChhhhhhc-----CCc----cccc--------------CCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHH
Q 004879 505 -TAPAKELASC-----GLD----VQQL--------------NRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEV 560 (725)
Q Consensus 505 -~~p~~~l~~~-----Gl~----~~~l--------------~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev 560 (725)
.+|.+.+..+ ++. ..++ .++..+.+. ....+++-..+++.|..|..||.-+.+-+
T Consensus 367 E~w~~~l~~~~lpr~l~Ii~eIn~~fl~~~~~~~~~~~~~~~~~sii~~~-~~~~v~Ma~LAl~~S~~vNGVS~lH~evl 445 (815)
T PRK14986 367 ETWPVDMLGKILPRHLQIIFEINDYFLKTLQEQYPNDTDLLGRASIIDES-NGRRVRMAWLAVVVSHKVNGVSELHSNLM 445 (815)
T ss_pred CcCCHHHHHHHccHhhhHHHHHHHHHHHHHHHhCCCcHHHHhhhhccccC-CCCEEeeHHHHhhccchhhHHHHHHHHHH
Confidence 3444433211 000 0000 000001110 12257788889999999999998776544
Q ss_pred HhhccCCCcccccccCCCcEEEEeCCccCCCCC----CCCcchhhhccC------------------ccc-----ccchh
Q 004879 561 RTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWN----PATDTFLKVQYN------------------AND-----LQGKA 613 (725)
Q Consensus 561 ~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~----P~~d~~l~~~ys------------------~~d-----~~gK~ 613 (725)
.+.-+. ..-...+.|+.-|.|||....|- |.....+..... ..+ .+-|.
T Consensus 446 ~~~~f~----df~~l~P~kf~niTNGV~~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~d~~f~~~l~~vk~ 521 (815)
T PRK14986 446 VQSLFA----DFAKIFPGRFCNVTNGVTPRRWLALANPSLSAVLDEHIGRTWRTDLSQLSELKQHCDYPMVNHAVRQAKL 521 (815)
T ss_pred HHHHHH----HHHhhCCCcccccCCCCChhhHhhhcCHHHHHHHHHhcCchhhhChHHHHHHHhhccCHHHHHHHHHHHH
Confidence 232110 00012467788899999999996 432222221111 001 12344
Q ss_pred hhHHHH----HHHcCCCCCCCCCCEEEEeecCcCCCCHHH-HHHHHHHhh---cC------CcEEEEEcCCCccc-----
Q 004879 614 ENKESI----RKHLGLSSADARKPLVGCITRLVPQKGVHL-IRHAIYRTL---EL------GGQFILLGSSPVPH----- 674 (725)
Q Consensus 614 ~~K~aL----Rk~lGL~~~d~~~plV~fVGRL~~qKGvdl-LieA~~~L~---~~------~iqLVIvG~Gp~~~----- 674 (725)
.+|..| +++.|.. .+++...++++-|+..+|...+ +++.+.++. .. +.+||+.|.....+
T Consensus 522 ~nK~~L~~~i~~~~g~~-ldp~sLfd~qakR~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~ 600 (815)
T PRK14986 522 ENKKRLAEYIAQQLNVV-VNPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAYYMAKH 600 (815)
T ss_pred HHHHHHHHHHHHHhCCc-cCcccceeeeehhhhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHH
Confidence 455543 5577875 5778889999999999999999 777766653 21 47899999743221
Q ss_pred -cc------H-------------------------HHHHHhcCeEEEcCC--cccchHHHHHHc
Q 004879 675 -IQ------V-------------------------YPILLSSFSFLRKHI--FNICNLYIKLGQ 704 (725)
Q Consensus 675 -le------~-------------------------~~iyAaADIfVlPS~--~EpfGLv~LEAM 704 (725)
++ + +.++.+||+...-|. .|++|.+-|-||
T Consensus 601 iIk~I~~va~~in~Dp~v~~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~a 664 (815)
T PRK14986 601 IIHLINDVAKVINNDPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFA 664 (815)
T ss_pred HHHHHHHHHHHhccChhhcCceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHH
Confidence 11 0 189999999999887 799999999987
No 103
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=98.27 E-value=5.5e-07 Score=98.99 Aligned_cols=167 Identities=24% Similarity=0.246 Sum_probs=93.9
Q ss_pred ceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCCc---ccCCCChhh---hhhcCCcccccCCcccccccccccc
Q 004879 462 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFE---YQGTAPAKE---LASCGLDVQQLNRPDRMQDNSAHDR 535 (725)
Q Consensus 462 PDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~---~qg~~p~~~---l~~~Gl~~~~l~~~~~l~d~~~~~~ 535 (725)
.=|.|.|.|++++. +.+-. .+...+-+|||.|..- |.|.-..+. +....++.+. .+.+ .+.+
T Consensus 175 ~vVahFHEW~AGVg--L~l~R---~rrl~iaTifTTHATLLGRyLCA~~~DfYNnLd~f~vD~EA----Gkr~---IYHr 242 (692)
T KOG3742|consen 175 AVVAHFHEWQAGVG--LILCR---ARRLDIATIFTTHATLLGRYLCAGNVDFYNNLDSFDVDKEA----GKRQ---IYHR 242 (692)
T ss_pred HHHHHHHHHHhccc--hheeh---hcccceEEEeehhHHHHHHHHhcccchhhhchhhcccchhh----ccch---hHHH
Confidence 44779999998863 32211 1224677899999763 222111111 1111222111 0111 4567
Q ss_pred hhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhh
Q 004879 536 INPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAEN 615 (725)
Q Consensus 536 in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~ 615 (725)
..+++.+...|+..+|||...+-+... +|+ +++=.+.|||++...|..-.. -.+.-+ ..|...
T Consensus 243 YC~ERaa~h~AhVFTTVSeITa~EAeH---------lLk--RKPD~itPNGLNV~KFsA~HE---FQNLHA---~~KekI 305 (692)
T KOG3742|consen 243 YCLERAAAHTAHVFTTVSEITALEAEH---------LLK--RKPDVITPNGLNVKKFSAVHE---FQNLHA---QKKEKI 305 (692)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHH---------HHh--cCCCeeCCCCcceeehhHHHH---HHHHHH---HHHHHH
Confidence 788899999999999999876654321 222 233457899999987754210 000000 012222
Q ss_pred HHHHHHHc-C-CCCCCCCCCE-EEEeecCc-CCCCHHHHHHHHHHhh
Q 004879 616 KESIRKHL-G-LSSADARKPL-VGCITRLV-PQKGVHLIRHAIYRTL 658 (725)
Q Consensus 616 K~aLRk~l-G-L~~~d~~~pl-V~fVGRL~-~qKGvdlLieA~~~L~ 658 (725)
....|-+| | ++ -|-++.+ +..+||.. ..||-+.+|++++++.
T Consensus 306 ndFVRGHF~GhlD-FdLdkTlyfFiAGRYEf~NKGaDmFiEsLaRLN 351 (692)
T KOG3742|consen 306 NDFVRGHFHGHLD-FDLDKTLYFFIAGRYEFSNKGADMFIESLARLN 351 (692)
T ss_pred HHHhhhhcccccc-ccccceEEEEEeeeeeeccCchHHHHHHHHHhH
Confidence 23455544 2 22 1334444 55579997 6999999999999975
No 104
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=98.25 E-value=0.00016 Score=79.64 Aligned_cols=86 Identities=20% Similarity=0.160 Sum_probs=48.7
Q ss_pred HHHHHHcCCCCCCCCCCEEEEe-ecCcCCCCH-HHHHHHHHHhhcCCcEEEE-EcCCCccc-------------ccH--H
Q 004879 617 ESIRKHLGLSSADARKPLVGCI-TRLVPQKGV-HLIRHAIYRTLELGGQFIL-LGSSPVPH-------------IQV--Y 678 (725)
Q Consensus 617 ~aLRk~lGL~~~d~~~plV~fV-GRL~~qKGv-dlLieA~~~L~~~~iqLVI-vG~Gp~~~-------------le~--~ 678 (725)
...++.+|+++ ++|+|+.. |.... +.+ +.+.+++..+. .+++++. .|...... +.. .
T Consensus 173 ~~~~~~~~l~~---~~~~iLv~GGS~Ga-~~in~~~~~~l~~l~-~~~~vv~~~G~~~~~~~~~~~~~~~~~~f~~~~m~ 247 (352)
T PRK12446 173 EKGLAFLGFSR---KKPVITIMGGSLGA-KKINETVREALPELL-LKYQIVHLCGKGNLDDSLQNKEGYRQFEYVHGELP 247 (352)
T ss_pred hHHHHhcCCCC---CCcEEEEECCccch-HHHHHHHHHHHHhhc-cCcEEEEEeCCchHHHHHhhcCCcEEecchhhhHH
Confidence 44567788873 56666555 55443 334 33334444443 3477665 57542111 111 2
Q ss_pred HHHHhcCeEEEcCCcccchHHHHHHc--CCCcccc
Q 004879 679 PILLSSFSFLRKHIFNICNLYIKLGQ--GGDLTVN 711 (725)
Q Consensus 679 ~iyAaADIfVlPS~~EpfGLv~LEAM--g~~~~V~ 711 (725)
.+|++||++|.-+ -|.|..|++ |.|.+++
T Consensus 248 ~~~~~adlvIsr~----G~~t~~E~~~~g~P~I~i 278 (352)
T PRK12446 248 DILAITDFVISRA----GSNAIFEFLTLQKPMLLI 278 (352)
T ss_pred HHHHhCCEEEECC----ChhHHHHHHHcCCCEEEE
Confidence 8999999998853 367888987 4444444
No 105
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=98.24 E-value=2.1e-06 Score=79.67 Aligned_cols=81 Identities=19% Similarity=0.139 Sum_probs=58.3
Q ss_pred CCEEEEeecCcCCCCHHHHHH-HHHHhhc--CCcEEEEEcCCCcc--cc----------cHH--HHHHhcCeEEEcCC-c
Q 004879 632 KPLVGCITRLVPQKGVHLIRH-AIYRTLE--LGGQFILLGSSPVP--HI----------QVY--PILLSSFSFLRKHI-F 693 (725)
Q Consensus 632 ~plV~fVGRL~~qKGvdlLie-A~~~L~~--~~iqLVIvG~Gp~~--~l----------e~~--~iyAaADIfVlPS~-~ 693 (725)
.++|+++|++.+.||++.+++ |+.++.+ ++++|+|+|.++.. .+ -.+ .+++.||++++|+. .
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~~l~~~~~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~ 81 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPDELKRLRRPNVRFHGFVEELPEILAAADVGLIPSRFN 81 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS-HHCCHHHCTEEEE-S-HHHHHHHHC-SEEEE-BSS-
T ss_pred cccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHHHHHHhcCCCEEEcCCHHHHHHHHHhCCEEEEEeeCC
Confidence 368999999999999999999 9988865 47999999998752 11 011 89999999999996 6
Q ss_pred ccchHHHHHHcCCCccccC
Q 004879 694 NICNLYIKLGQGGDLTVNN 712 (725)
Q Consensus 694 EpfGLv~LEAMg~~~~V~~ 712 (725)
++++...+|||+++.||+.
T Consensus 82 ~~~~~k~~e~~~~G~pvi~ 100 (135)
T PF13692_consen 82 EGFPNKLLEAMAAGKPVIA 100 (135)
T ss_dssp SCC-HHHHHHHCTT--EEE
T ss_pred CcCcHHHHHHHHhCCCEEE
Confidence 8999999999988888653
No 106
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=98.11 E-value=7.2e-05 Score=84.54 Aligned_cols=245 Identities=20% Similarity=0.227 Sum_probs=113.1
Q ss_pred hhhhhhhhchhhHHHHhhhccCCCCCCCCeEEEEcCccC-------CCCCCCcHHHHHHHHHHHHHHC--------CC--
Q 004879 305 AYMECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMA-------PVAKVGGLGDVVAGLGKALQKK--------GH-- 367 (725)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~MkILhIs~E~~-------P~~kvGGlg~vV~~LaraL~~~--------GH-- 367 (725)
...++-+..|+..|..|++..+.- .+|++++++.+ ...-+||.-.||.+++|||.+. |-
T Consensus 249 lL~dll~aPdp~~LE~Fl~RiPmv----f~vvliSpHG~f~q~nvLG~pDTGGQVvYVleqarALe~e~~~ri~~~gl~i 324 (550)
T PF00862_consen 249 LLSDLLEAPDPSTLEKFLSRIPMV----FNVVLISPHGYFGQENVLGRPDTGGQVVYVLEQARALENEMLYRIKLQGLDI 324 (550)
T ss_dssp HHHHHHHS--HHHHHHHHHHS-------SEEEEE--SS--STTSTTSSTTSSHHHHHHHHHHHHHHHHTHHHHHHTT---
T ss_pred HHHHHHhCCCchHHHHHhhhccee----EEEEEEcCccccccccccCCCCCCCcEEEEeHHHHHHHHHHHHHHHhcCCCC
Confidence 344667788888888888776553 58999998731 1224899999999999999753 43
Q ss_pred --eEEEEeeCCCCCcccc-cccccccceeeeeccCCc--ceeeeeEeeeeCCeeEEEeCCCCCCcccccCCCCCCCchhh
Q 004879 368 --LVEIVLPKYDCMQYDR-IDDLRALDVVVESYFDGR--LFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFR 442 (725)
Q Consensus 368 --eV~VItP~y~~l~~~~-v~~L~~l~~~i~~~f~g~--~~~~rV~~~~v~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~ 442 (725)
.|.|+|.--+...... -.++. .+ .|. .+-.||--+...|+ ++ ++..+-.+|++ ..
T Consensus 325 ~p~i~i~TRlIpd~~~t~~~q~le-------~~-~gt~~a~IlRvPF~~~~gi----~~-----kwisrf~lWPy---Le 384 (550)
T PF00862_consen 325 TPKIDIVTRLIPDAKGTTCNQRLE-------KV-SGTENARILRVPFGPEKGI----LR-----KWISRFDLWPY---LE 384 (550)
T ss_dssp --EEEEEEE--TBTTCGGGTSSEE-------EE-TTESSEEEEEE-ESESTEE----E------S---GGG-GGG---HH
T ss_pred CCceeeecccccCCcCCCcccccc-------cc-CCCCCcEEEEecCCCCcch----hh-----hccchhhchhh---HH
Confidence 3666664322110000 00111 11 111 11111211111111 11 12222233332 12
Q ss_pred hHHHHHHHHH-HHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCccccc
Q 004879 443 RFSFFSRAAL-ELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQL 521 (725)
Q Consensus 443 r~~~Fsravl-elL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l 521 (725)
+ |+..+. ++.+..+..||+||.|...++++|.++... .++|.++|-|.+.- .++...++.++.+
T Consensus 385 ~---fa~d~~~~i~~e~~~~PdlI~GnYsDgnlvA~LLs~~------lgv~~~~iaHsLek------~Ky~~s~~~w~e~ 449 (550)
T PF00862_consen 385 E---FADDAEREILAELQGKPDLIIGNYSDGNLVASLLSRK------LGVTQCFIAHSLEK------TKYEDSDLYWKEI 449 (550)
T ss_dssp H---HHHHHHHHHHHHHTS--SEEEEEHHHHHHHHHHHHHH------HT-EEEEE-SS-HH------HHHHTTTTTSHHH
T ss_pred H---HHHHHHHHHHHHhCCCCcEEEeccCcchHHHHHHHhh------cCCceehhhhcccc------ccccccCCCHHHH
Confidence 2 444444 344445779999999988888887766553 48999999999841 1111112211111
Q ss_pred CCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhc---cCC---------Ccccccc---cCCCcEEEEeCC
Q 004879 522 NRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSE---GGQ---------GLHSTLN---FHSKKFVGILNG 586 (725)
Q Consensus 522 ~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~---~g~---------GL~~~l~---~~~~Kv~vIpNG 586 (725)
. ..|.+.-++.....++.+||.|||-+. +++.... +++ ||-...+ ....|+.+||.|
T Consensus 450 e-----~~Yhfs~qftAd~iamn~adfIItST~---QEI~g~~~~~gqyes~~~ftlpgLyrvv~Gi~vFdPkfNiv~PG 521 (550)
T PF00862_consen 450 E-----EKYHFSCQFTADLIAMNAADFIITSTY---QEIAGQKDTVGQYESHKAFTLPGLYRVVNGIDVFDPKFNIVSPG 521 (550)
T ss_dssp H-----HHH-HHHHHHHHHHHHHHSSEEEESSH---HHHHB-SSSBHTTGGGSSEEETTTEEEEES--TT-TTEEE----
T ss_pred H-----hhccchhhhhHHHHHhhcCCEEEEcch---HhhcCCccccCCccchhhcchHhHHhhhccccccCCcccccCCC
Confidence 0 001123345556688999999988663 4554321 111 3322222 345677788888
Q ss_pred ccCCCCCCCC
Q 004879 587 IDTDAWNPAT 596 (725)
Q Consensus 587 ID~~~f~P~~ 596 (725)
+|...|-|.+
T Consensus 522 ad~~iyFpyt 531 (550)
T PF00862_consen 522 ADESIYFPYT 531 (550)
T ss_dssp --TTTS--TT
T ss_pred CCcceecCCc
Confidence 8887777754
No 107
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=98.06 E-value=3.3e-05 Score=91.99 Aligned_cols=254 Identities=19% Similarity=0.204 Sum_probs=155.9
Q ss_pred HHHHHHHHHHH-HHc--------C-CCceEEEECCCchhhHHHHHHHhhccC-C--------CCCCcEEEEeeCCcccC-
Q 004879 445 SFFSRAALELL-LQA--------G-KQPDIIHCHDWQTAFVAPLYWDLYVPK-G--------LNSARVCFTCHNFEYQG- 504 (725)
Q Consensus 445 ~~FsravlelL-~~~--------~-~kPDIIH~Hdw~sa~vapl~~~~ya~~-g--------l~~ipiV~TiHn~~~qg- 504 (725)
.+|+.+.++-+ +.. + .++.+||+++-|++++.|-+...+... + ..+.-++||.|+.-..+
T Consensus 271 yfl~~aglqdiir~~~~~~~~l~~l~~~~~ihlNDtHpalai~ElmR~L~d~~gl~wd~Aw~iv~~~~~yTnHT~lpeal 350 (794)
T TIGR02093 271 YFFVSASLQDIIRRHLETHPDLSDFPKKVAIQLNDTHPALAIPELMRLLIDEEGMDWDEAWDITTKTFAYTNHTLLPEAL 350 (794)
T ss_pred HHhhhhHHHHHHHHHHHhCCChhhCCcceEEEecCCchHHHHHHHHHHHHHhcCCCHHHHHHHHHhheecccCCCChHHh
Confidence 35676666533 221 1 278999999999988776665432211 1 23567999999984322
Q ss_pred -CCChhhhhh---------cCCccccc--------------CCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHH
Q 004879 505 -TAPAKELAS---------CGLDVQQL--------------NRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEV 560 (725)
Q Consensus 505 -~~p~~~l~~---------~Gl~~~~l--------------~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev 560 (725)
.+|.+.+.. .++...++ .++..+.. .....++|-..++..|..|..||.-+.+-+
T Consensus 351 E~wp~~l~~~~Lpr~~~iI~~In~~fl~~~~~~~p~d~~~~~~~sii~~-~~~~~v~Ma~LAi~~S~~vNGVS~lH~eil 429 (794)
T TIGR02093 351 EKWPVDLFQKLLPRHLEIIYEINRRFLAELAAKGPGDEAKIRRMSIIEE-GQSKRVRMANLAIVGSHSVNGVAALHTELL 429 (794)
T ss_pred CCcCHHHHHHHHhHHHHHHHHHhHHHHHHHHHhCCCcHHHHhheeeeec-CCCCEEehHHHHHHhhhhhhhhHHHHHHHH
Confidence 345443321 11111110 01111110 012257888899999999999998776655
Q ss_pred HhhccCCCcccccccCCCcEEEEeCCccCCCCC----CCCcchhhhc-----------------cCcc-----c-ccchh
Q 004879 561 RTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWN----PATDTFLKVQ-----------------YNAN-----D-LQGKA 613 (725)
Q Consensus 561 ~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~----P~~d~~l~~~-----------------ys~~-----d-~~gK~ 613 (725)
.+.-+. ..-...+.++.-+.|||...+|- |.....+... +..| . .+-|.
T Consensus 430 k~~~~~----df~~l~P~kf~n~TNGVt~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~l~~vK~ 505 (794)
T TIGR02093 430 KEDLLK----DFYELYPEKFNNKTNGITPRRWLRLANPGLSALLTETIGDDWLTDLDLLKKLEPYADDSEFLEEFRQVKQ 505 (794)
T ss_pred HHHHHH----HHHhhCCCccCCcCCCCCccchhhhcCHHHHHHHHHhcCchhhhcHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 432110 00013467888999999999885 3222222211 1111 1 13355
Q ss_pred hhHHHH----HHHcCCCCCCCCCCEEEEeecCcCCCCHHH-HHHHHHHhhc---C------CcEEEEEcCCCccc-----
Q 004879 614 ENKESI----RKHLGLSSADARKPLVGCITRLVPQKGVHL-IRHAIYRTLE---L------GGQFILLGSSPVPH----- 674 (725)
Q Consensus 614 ~~K~aL----Rk~lGL~~~d~~~plV~fVGRL~~qKGvdl-LieA~~~L~~---~------~iqLVIvG~Gp~~~----- 674 (725)
.+|..| +++.|+. .+++....+++-|+..+|...+ +++.+.+..+ . +.+||+.|.....+
T Consensus 506 ~nK~~L~~~i~~~~g~~-ldp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~ 584 (794)
T TIGR02093 506 ANKQRLAAYIKEHTGVE-VDPNSIFDVQVKRLHEYKRQLLNVLHVIYLYNRIKEDPPKDIVPRTVIFGGKAAPGYHMAKL 584 (794)
T ss_pred HHHHHHHHHHHHhcCCc-cCccccchhhheechhhhHHHHHHhhhHHHHHHHHhCCCcCCCCeEEEEEecCCCCcHHHHH
Confidence 555544 5677875 5778888999999999999999 7777665442 2 45889999643221
Q ss_pred -cc-------------------------------HHHHHHhcCeEEEcCC--cccchHHHHHHc
Q 004879 675 -IQ-------------------------------VYPILLSSFSFLRKHI--FNICNLYIKLGQ 704 (725)
Q Consensus 675 -le-------------------------------~~~iyAaADIfVlPS~--~EpfGLv~LEAM 704 (725)
++ .+.++.+||+...-|. .|++|.+-|-+|
T Consensus 585 iIklI~~va~~iN~Dp~v~~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~a 648 (794)
T TIGR02093 585 IIKLINSVAEVVNNDPAVGDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFM 648 (794)
T ss_pred HHHHHHHHHHHhccChhhCCceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHH
Confidence 10 0189999999999887 799999999988
No 108
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.99 E-value=0.00042 Score=75.10 Aligned_cols=212 Identities=16% Similarity=0.146 Sum_probs=120.6
Q ss_pred CCCceEEEEC-CCchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccch-
Q 004879 459 GKQPDIIHCH-DWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRI- 536 (725)
Q Consensus 459 ~~kPDIIH~H-dw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~i- 536 (725)
+..|||..-- .+...+ |.+.. +.++|++.-+|........ .+.+...... .+....++. ++..+
T Consensus 148 r~~Pdi~IDtMGY~fs~--p~~r~------l~~~~V~aYvHYP~iS~DM-L~~l~qrq~s--~~l~~~Kla---Y~rlFa 213 (465)
T KOG1387|consen 148 RFPPDIFIDTMGYPFSY--PIFRR------LRRIPVVAYVHYPTISTDM-LKKLFQRQKS--GILVWGKLA---YWRLFA 213 (465)
T ss_pred hCCchheEecCCCcchh--HHHHH------HccCceEEEEecccccHHH-HHHHHhhhhc--chhhhHHHH---HHHHHH
Confidence 6799987644 222221 44432 4689999999975321110 0111100000 000011111 11111
Q ss_pred hhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhH
Q 004879 537 NPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENK 616 (725)
Q Consensus 537 n~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K 616 (725)
.+...+-..||.|+|.|.+....+.. ..+ ..++.+|+...+++
T Consensus 214 ~lY~~~G~~ad~vm~NssWT~nHI~q-iW~----------~~~~~iVyPPC~~e-------------------------- 256 (465)
T KOG1387|consen 214 LLYQSAGSKADIVMTNSSWTNNHIKQ-IWQ----------SNTCSIVYPPCSTE-------------------------- 256 (465)
T ss_pred HHHHhccccceEEEecchhhHHHHHH-Hhh----------ccceeEEcCCCCHH--------------------------
Confidence 22345566789999999988877765 221 24555654433332
Q ss_pred HHHHHHcCCCCCCCCCCEEEEeecCcCCCCHH-HHHHHHHHhhc------CCcEEEEEcCCCcc-c------ccHH----
Q 004879 617 ESIRKHLGLSSADARKPLVGCITRLVPQKGVH-LIRHAIYRTLE------LGGQFILLGSSPVP-H------IQVY---- 678 (725)
Q Consensus 617 ~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvd-lLieA~~~L~~------~~iqLVIvG~Gp~~-~------le~~---- 678 (725)
.+.+..|-. +.+.+.++++|.+.|+|+.. +=+.|+..... .+++++|+|+.-.. + ++..
T Consensus 257 -~lks~~~te--~~r~~~ll~l~Q~RPEKnH~~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L 333 (465)
T KOG1387|consen 257 -DLKSKFGTE--GERENQLLSLAQFRPEKNHKILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEEL 333 (465)
T ss_pred -HHHHHhccc--CCcceEEEEEeecCcccccHHHHHHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhc
Confidence 233333321 34568899999999999998 33445544332 36899999984211 1 1110
Q ss_pred ------------------HHHHhcCeEEEcCCcccchHHHHHHcCCCcc-ccCCCC-Cceeeeccc
Q 004879 679 ------------------PILLSSFSFLRKHIFNICNLYIKLGQGGDLT-VNNNCE-PWLHHIEVW 724 (725)
Q Consensus 679 ------------------~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~-V~~~~~-G~l~~~~~~ 724 (725)
.+|..|-+.|..=.-|-||+.++|+|+++.+ |.|+.+ +.++..+-|
T Consensus 334 ~i~~~v~F~~N~Py~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~lDIV~~~ 399 (465)
T KOG1387|consen 334 KIPKHVQFEKNVPYEKLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIPIVHNSGGPLLDIVTPW 399 (465)
T ss_pred CCccceEEEecCCHHHHHHHhccceeehhhhhhhhcchhHHHHHhcCceEEEeCCCCCceeeeecc
Confidence 7889999998888889999999999976654 444444 444444444
No 109
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=97.80 E-value=5.9e-05 Score=88.97 Aligned_cols=254 Identities=21% Similarity=0.221 Sum_probs=133.5
Q ss_pred HHHHHHHHHH-HHHc---C------CCceEEEECCCchhhHHHHHHHhhcc-CCC--------CCCcEEEEeeCCcccC-
Q 004879 445 SFFSRAALEL-LLQA---G------KQPDIIHCHDWQTAFVAPLYWDLYVP-KGL--------NSARVCFTCHNFEYQG- 504 (725)
Q Consensus 445 ~~Fsravlel-L~~~---~------~kPDIIH~Hdw~sa~vapl~~~~ya~-~gl--------~~ipiV~TiHn~~~qg- 504 (725)
.||+.+.++- +++. + ..+-+||+++-|++++.+-+...+.. .++ .+.-++||.|+.-..|
T Consensus 188 yf~vsa~lqdiir~~~~~~~~~~~~~~~~~ihlNdtHpa~ai~ElmR~L~de~gl~~~eA~eiv~~~~~fTnHT~vpeal 267 (713)
T PF00343_consen 188 YFFVSASLQDIIRRFKKSHGDLREFPDKVVIHLNDTHPAFAIPELMRILMDEEGLSWDEAWEIVRKTFAFTNHTPVPEAL 267 (713)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGHHHHEEEEEESSTTTTHHHHHHHHHHHTT---HHHHHHHHHHHEEEEE--SSGGGS
T ss_pred hhhhhhHHHHHHHHHHHhCCChHHCCcceEEeecCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHhceeeeccccccccc
Confidence 3567776654 3332 1 12459999999999887666554332 121 2456899999984333
Q ss_pred -CCChhhhhh-----------------------cCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHH
Q 004879 505 -TAPAKELAS-----------------------CGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEV 560 (725)
Q Consensus 505 -~~p~~~l~~-----------------------~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev 560 (725)
.||.+.+.. .+.+...+..+..+. ......++|-..|++.|..|..||.-+.+-+
T Consensus 268 E~wp~~l~~~~Lpr~~~ii~ein~~f~~~~~~~~~~d~~~~~~l~ii~-~~~~~~~~Ma~LAl~~S~~vNGVS~LH~ev~ 346 (713)
T PF00343_consen 268 EKWPVDLFERYLPRHLEIIYEINRRFLDELRRKYPGDEDQIRRLSIIE-EGNSKRFRMANLALRGSHSVNGVSKLHGEVL 346 (713)
T ss_dssp -EEEHHHHHHHSHHHHHHHHHHHHHHHHHHHHHSTT-HHHHHHHSSEE-TSSSCEEEHHHHHHHCESEEEESSHHHHHHH
T ss_pred cccCHHHHHHHChHHHHHHHHHhHHHHHHHHHHhcCcchhhhhccccc-ccchhhcchhHHHHHhcccccchHHHHHHHH
Confidence 234333221 011111110011111 0123467888899999999999998877655
Q ss_pred HhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcc----hh----hhccC--cc----------c------c-cchh
Q 004879 561 RTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDT----FL----KVQYN--AN----------D------L-QGKA 613 (725)
Q Consensus 561 ~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~----~l----~~~ys--~~----------d------~-~gK~ 613 (725)
.+..+. ..-...+.|+.-|.|||...+|--..-| .+ ...+. ++ | + +-|.
T Consensus 347 k~~~f~----~f~~l~P~kf~nvTNGVh~rrWl~~~nP~L~~L~~~~iG~~W~~d~~~l~~l~~~~dd~~~~~~~~~vK~ 422 (713)
T PF00343_consen 347 KQMVFK----DFYELWPEKFGNVTNGVHPRRWLSQANPELSELITEYIGDDWRTDLEQLEKLEKFADDEEFQEELREVKQ 422 (713)
T ss_dssp HHTTTH----HHHHHSGGGEEE----B-TCCCCCCTSHHHHHHHHHHHTSGGGCSGGGGGGGGGGCCSHHHHHHHHHHHH
T ss_pred HHHHhh----hhhhcCCceeeccccCccCcccccccCHHHHHHHHHHhccccccCHHHHHHHHHhhCchHHHHHHHHHHH
Confidence 443220 1112346789999999999999532111 11 11121 11 1 0 1223
Q ss_pred hhHHH----HHHHcCCCCCCCCCCEEEEeecCcCCCCHHH-HHHHHH---Hhhc------CCcEEEEEcCCCccc-----
Q 004879 614 ENKES----IRKHLGLSSADARKPLVGCITRLVPQKGVHL-IRHAIY---RTLE------LGGQFILLGSSPVPH----- 674 (725)
Q Consensus 614 ~~K~a----LRk~lGL~~~d~~~plV~fVGRL~~qKGvdl-LieA~~---~L~~------~~iqLVIvG~Gp~~~----- 674 (725)
.+|.. ++++.|+. .+++....+++-|+.++|...+ +++.+. ++.. .+++||++|.....+
T Consensus 423 ~~K~rl~~~i~~~~~~~-ldp~slfdv~~rR~heYKRq~LniL~ii~~y~rik~~p~~~~~Pv~~IFaGKAhP~d~~gK~ 501 (713)
T PF00343_consen 423 ENKERLAEYIKKRTGVE-LDPDSLFDVQARRFHEYKRQLLNILHIIDRYNRIKNNPNKKIRPVQFIFAGKAHPGDYMGKE 501 (713)
T ss_dssp HHHHHHHHHHHHHHSS----TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-EEEEEE----TT-HHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CCcchhhhhhhhhcccccccCcccccHHHHHHHHHhcccCCCCCeEEEEeccCCCCcHHHHH
Confidence 33333 35566764 3567778899999999999988 454444 3433 257899999743211
Q ss_pred -cc-------------------------------HHHHHHhcCeEEEcCC--cccchHHHHHHc
Q 004879 675 -IQ-------------------------------VYPILLSSFSFLRKHI--FNICNLYIKLGQ 704 (725)
Q Consensus 675 -le-------------------------------~~~iyAaADIfVlPS~--~EpfGLv~LEAM 704 (725)
|+ .+.++.+||+...-|+ .|++|.+-|-||
T Consensus 502 iIk~I~~va~~in~Dp~v~~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~ 565 (713)
T PF00343_consen 502 IIKLINNVAEVINNDPEVGDRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAA 565 (713)
T ss_dssp HHHHHHHHHHHHCT-TTTCCGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHH
T ss_pred HHHHHHHHHHHHhcChhhccceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhh
Confidence 11 0189999999999887 799999999987
No 110
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=97.77 E-value=0.0006 Score=78.16 Aligned_cols=214 Identities=19% Similarity=0.207 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCccc
Q 004879 447 FSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDR 526 (725)
Q Consensus 447 FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~ 526 (725)
.++..++.+...-..-|+|=+||+|-.++ |.++.. ...+.|+.+.+|.. +|...+..| +|.
T Consensus 127 vN~~FA~~i~~~~~~~D~VWVhDYhL~ll-P~~LR~----~~~~~~IgfFlHiP-----FPs~e~fr~-lP~-------- 187 (474)
T PF00982_consen 127 VNRRFADAIAEVYRPGDLVWVHDYHLMLL-PQMLRE----RGPDARIGFFLHIP-----FPSSEIFRC-LPW-------- 187 (474)
T ss_dssp HHHHHHHHHGGG--TT-EEEEESGGGTTH-HHHHHH----TT--SEEEEEE-S---------HHHHTT-STT--------
T ss_pred HHHHHHHHHHHhCcCCCEEEEeCCcHHHH-HHHHHh----hcCCceEeeEEecC-----CCCHHHHhh-CCc--------
Confidence 34444444443334679999999999888 455543 23579999999974 343322111 111
Q ss_pred ccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhcc-CCCcccc-----cc--cCCCcEEEEeCCccCCCCCCCCcc
Q 004879 527 MQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEG-GQGLHST-----LN--FHSKKFVGILNGIDTDAWNPATDT 598 (725)
Q Consensus 527 l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~-g~GL~~~-----l~--~~~~Kv~vIpNGID~~~f~P~~d~ 598 (725)
+- -+-.++-.||.|-+-++.|++..+..-- -.|+... +. .+.-++.+.|=|||++.|....
T Consensus 188 --------r~-eiL~glL~aDlIgFqt~~~~~nFl~~~~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~-- 256 (474)
T PF00982_consen 188 --------RE-EILRGLLGADLIGFQTFEYARNFLSCCKRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLA-- 256 (474)
T ss_dssp --------HH-HHHHHHTTSSEEEESSHHHHHHHHHHHHHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHH--
T ss_pred --------HH-HHHHHhhcCCEEEEecHHHHHHHHHHHHHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhc--
Confidence 11 1234567789999999988876543210 0111110 11 1223456667788877553210
Q ss_pred hhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhc------CCcEEEEEcCCCc
Q 004879 599 FLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE------LGGQFILLGSSPV 672 (725)
Q Consensus 599 ~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~------~~iqLVIvG~Gp~ 672 (725)
...++ ...-..+++.++- +..+|+-|.|+.+.||+..=+.|+.++++ ..+.|+-++...-
T Consensus 257 ------~~~~v---~~~~~~l~~~~~~-----~~~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~~~~kv~liQi~~psr 322 (474)
T PF00982_consen 257 ------RSPEV---QERAEELREKFKG-----KRKIIVGVDRLDYTKGIPEKLRAFERFLERYPEYRGKVVLIQIAVPSR 322 (474)
T ss_dssp ------H-S------HHHHHHHHHTTT------SEEEEEE--B-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEE--B-S
T ss_pred ------cChHH---HHHHHHHHHhcCC-----CcEEEEEeccchhhcCHHHHHHHHHHHHHhCcCccCcEEEEEEeeccC
Confidence 00000 0122456777651 24799999999999999999999999875 2466776665221
Q ss_pred ---cc---ccHH---------------------------------HHHHhcCeEEEcCCcccchHHHHHHc
Q 004879 673 ---PH---IQVY---------------------------------PILLSSFSFLRKHIFNICNLYIKLGQ 704 (725)
Q Consensus 673 ---~~---le~~---------------------------------~iyAaADIfVlPS~~EpfGLv~LEAM 704 (725)
+. ++.+ .+|+.||+++++|..++.-+++.|..
T Consensus 323 ~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~aly~~aDv~lvTslrDGmNLva~Eyv 393 (474)
T PF00982_consen 323 EDVPEYQELRREVEELVGRINGKYGTPDWTPIIYIYRSLSFEELLALYRAADVALVTSLRDGMNLVAKEYV 393 (474)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEE-S---HHHHHHHHHH-SEEEE--SSBS--HHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHhhcccCCceeEEEEecCCCHHHHHHHHHhhhhEEecchhhccCCcceEEE
Confidence 11 1110 89999999999999999999999965
No 111
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=97.69 E-value=0.0013 Score=75.24 Aligned_cols=210 Identities=16% Similarity=0.045 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCccc
Q 004879 447 FSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDR 526 (725)
Q Consensus 447 FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~ 526 (725)
|+.++.+.. ..-|+|=+||+|-.++ |.++... ..+.++-|.+|-. +|...+..+ +|..
T Consensus 113 FA~~v~~~~----~~~D~VWVHDYhL~ll-p~~LR~~----~~~~~IgFFlHiP-----FPs~eifr~-LP~r------- 170 (474)
T PRK10117 113 LADKLLPLL----KDDDIIWIHDYHLLPF-ASELRKR----GVNNRIGFFLHIP-----FPTPEIFNA-LPPH------- 170 (474)
T ss_pred HHHHHHHhc----CCCCEEEEeccHhhHH-HHHHHHh----CCCCcEEEEEeCC-----CCChHHHhh-CCCh-------
Confidence 555544433 3458999999999888 4454432 3578999999964 333222111 1110
Q ss_pred ccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhcc-CCCccc----cc--ccCCCcEEEEeCCccCCCCCCCCcch
Q 004879 527 MQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEG-GQGLHS----TL--NFHSKKFVGILNGIDTDAWNPATDTF 599 (725)
Q Consensus 527 l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~-g~GL~~----~l--~~~~~Kv~vIpNGID~~~f~P~~d~~ 599 (725)
.-+-.++-.+|.|-+=++.|++.....-. -.|+.. .+ ....-++.+.|=|||++.|.....
T Consensus 171 ----------~eil~glL~aDlIGFqt~~y~rnFl~~~~~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a~-- 238 (474)
T PRK10117 171 ----------DELLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQAA-- 238 (474)
T ss_pred ----------HHHHHHHHhCccceeCCHHHHHHHHHHHHHHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHHHHhh--
Confidence 11234566788888888887766543110 001111 11 112234677788999877643210
Q ss_pred hhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhcC------CcEEEEEcCCCc-
Q 004879 600 LKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL------GGQFILLGSSPV- 672 (725)
Q Consensus 600 l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~~------~iqLVIvG~Gp~- 672 (725)
++ .......+++.++ ++.+|+-|.|+.+-||+..=+.|+.++++. .+.|+-+....-
T Consensus 239 -----~~-----~~~~~~~lr~~~~------~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~psR~ 302 (474)
T PRK10117 239 -----GP-----LPPKLAQLKAELK------NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRG 302 (474)
T ss_pred -----ch-----HHHHHHHHHHHcC------CCeEEEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcCCCCC
Confidence 00 0011235666664 357899999999999999999999998852 455665654221
Q ss_pred --ccc---cHH---------------------------------HHHHhcCeEEEcCCcccchHHHHHHcCC
Q 004879 673 --PHI---QVY---------------------------------PILLSSFSFLRKHIFNICNLYIKLGQGG 706 (725)
Q Consensus 673 --~~l---e~~---------------------------------~iyAaADIfVlPS~~EpfGLv~LEAMg~ 706 (725)
+.+ +.+ .+|++||++++.|..++.-||+.|-.++
T Consensus 303 ~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~ 374 (474)
T PRK10117 303 DVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAA 374 (474)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHhccEEEecccccccccccchheee
Confidence 111 110 8999999999999999999999997644
No 112
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=97.67 E-value=0.0017 Score=74.26 Aligned_cols=215 Identities=20% Similarity=0.211 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCC
Q 004879 444 FSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNR 523 (725)
Q Consensus 444 ~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~ 523 (725)
|.-+++.-++-+...-..=|+|=+||+|-.++ |.++... ..+.+|.|++|-. +|...+..| +|.+
T Consensus 130 Y~~vN~~FAd~i~~~~~~gDiIWVhDYhL~L~-P~mlR~~----~~~~~IgfFlHiP-----fPssEvfr~-lP~r---- 194 (486)
T COG0380 130 YVKVNRKFADKIVEIYEPGDIIWVHDYHLLLV-PQMLRER----IPDAKIGFFLHIP-----FPSSEVFRC-LPWR---- 194 (486)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEechhhhh-HHHHHHh----CCCceEEEEEeCC-----CCCHHHHhh-CchH----
Confidence 33344444444443323449999999998888 5554432 3567999999965 344333222 1111
Q ss_pred cccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhh---ccC-CCccc-ccc---cCCCcEEEEeCCccCCCCCCC
Q 004879 524 PDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTS---EGG-QGLHS-TLN---FHSKKFVGILNGIDTDAWNPA 595 (725)
Q Consensus 524 ~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~---~~g-~GL~~-~l~---~~~~Kv~vIpNGID~~~f~P~ 595 (725)
.-+-.++..||.|-+=++.|+...... ..+ .|... ..+ ....++..+|=|||+..|...
T Consensus 195 -------------~eIl~gll~~dligFqt~~y~~nF~~~~~r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~~~~ 261 (486)
T COG0380 195 -------------EEILEGLLGADLIGFQTESYARNFLDLCSRLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEFERA 261 (486)
T ss_pred -------------HHHHHHhhcCCeeEecCHHHHHHHHHHHHHhccccccccccccccCCceEEEEEEeeecCHHHHHHh
Confidence 112345677898988888887664321 010 01000 011 123467788899998766432
Q ss_pred CcchhhhccCcccccchhh--hHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhcC------CcEEEEE
Q 004879 596 TDTFLKVQYNANDLQGKAE--NKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL------GGQFILL 667 (725)
Q Consensus 596 ~d~~l~~~ys~~d~~gK~~--~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~~------~iqLVIv 667 (725)
.. ++.. .-..+++.++= ++.+++.+.|+.+-||+..=+.|+.+++.. .+.++-+
T Consensus 262 ~~-------------~~~v~~~~~el~~~~~~-----~~kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~~~kvvliQi 323 (486)
T COG0380 262 LK-------------SPSVQEKVLELKAELGR-----NKKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEWRGKVVLLQI 323 (486)
T ss_pred hc-------------CCchhhHHHHHHHHhcC-----CceEEEEehhcccccCcHHHHHHHHHHHHhChhhhCceEEEEe
Confidence 10 1111 22345555542 367999999999999999999999999852 3555556
Q ss_pred cCCCcc---cccH---H---------------------------------HHHHhcCeEEEcCCcccchHHHHHHc
Q 004879 668 GSSPVP---HIQV---Y---------------------------------PILLSSFSFLRKHIFNICNLYIKLGQ 704 (725)
Q Consensus 668 G~Gp~~---~le~---~---------------------------------~iyAaADIfVlPS~~EpfGLv~LEAM 704 (725)
+.++.. .++. . .+|+.||++++.|..|+.-+|..|-.
T Consensus 324 ~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al~~~aDv~lVtplrDGMNLvakEyV 399 (486)
T COG0380 324 APPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYRAADVMLVTPLRDGMNLVAKEYV 399 (486)
T ss_pred cCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHHHhhhceeeeccccccccHHHHHHH
Confidence 654322 1111 0 89999999999999999999999965
No 113
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=97.54 E-value=0.0018 Score=79.09 Aligned_cols=214 Identities=14% Similarity=0.144 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcc
Q 004879 446 FFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPD 525 (725)
Q Consensus 446 ~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~ 525 (725)
.|+.++.+.++ ..-|+|=+||+|-.++ |.++.. ...+.++-|.+|-. +|...+..+ +|..
T Consensus 189 ~FA~~v~~~~~---~~~d~VWVhDYhL~ll-P~~LR~----~~~~~~IgfFlHiP-----FPs~eifr~-LP~r------ 248 (854)
T PLN02205 189 IFADRIMEVIN---PEDDFVWIHDYHLMVL-PTFLRK----RFNRVKLGFFLHSP-----FPSSEIYKT-LPIR------ 248 (854)
T ss_pred HHHHHHHHHhC---CCCCEEEEeCchhhHH-HHHHHh----hCCCCcEEEEecCC-----CCChHHHhh-CCcH------
Confidence 46666665542 1138999999998888 455543 23578999999964 343222111 1110
Q ss_pred cccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhcc-CCCccccc---------ccCCCcEEEEeCCccCCCCCCC
Q 004879 526 RMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEG-GQGLHSTL---------NFHSKKFVGILNGIDTDAWNPA 595 (725)
Q Consensus 526 ~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~-g~GL~~~l---------~~~~~Kv~vIpNGID~~~f~P~ 595 (725)
.-+-.++-.||.|-+-+..|++..+..-. --|+.... ....-++.+.|=|||+..|...
T Consensus 249 -----------~eiL~glL~aDlIGFht~~yar~Fl~~~~r~lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~ 317 (854)
T PLN02205 249 -----------EELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSV 317 (854)
T ss_pred -----------HHHHHHHhcCCeEEecCHHHHHHHHHHHHHHhCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHH
Confidence 11234567789999999888876543210 01221110 0122345677889998766321
Q ss_pred CcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhcC------CcEEEEEcC
Q 004879 596 TDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL------GGQFILLGS 669 (725)
Q Consensus 596 ~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~~------~iqLVIvG~ 669 (725)
.. ..+. ......++++++- +++.+|+-|.|+.+.||+..=+.|+.++++. .+.||-+..
T Consensus 318 ~~--------~~~~---~~~~~~l~~~~~~----~~~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~~~gkvvlvQia~ 382 (854)
T PLN02205 318 LS--------LPET---EAKVKELIKQFCD----QDRIMLLGVDDMDIFKGISLKLLAMEQLLMQHPEWQGKVVLVQIAN 382 (854)
T ss_pred hc--------ChhH---HHHHHHHHHHhcc----CCCEEEEEccCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEec
Confidence 10 0000 1122356777652 2468999999999999999999999999852 345555543
Q ss_pred CCc---cc---ccHH---------------------------------HHHHhcCeEEEcCCcccchHHHHHHcC
Q 004879 670 SPV---PH---IQVY---------------------------------PILLSSFSFLRKHIFNICNLYIKLGQG 705 (725)
Q Consensus 670 Gp~---~~---le~~---------------------------------~iyAaADIfVlPS~~EpfGLv~LEAMg 705 (725)
..- +. ++.+ .+|++||++++.|..++.-||..|-..
T Consensus 383 psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv~~~~~~~~~~e~~aly~~ADv~lVT~lRDGMNLva~Eyia 457 (854)
T PLN02205 383 PARGKGKDVKEVQAETHSTVKRINETFGKPGYDPIVLIDAPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYII 457 (854)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEEecCCCHHHHHHHHHhccEEEeccccccccccchheeE
Confidence 221 11 1110 899999999999999999999999663
No 114
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=97.21 E-value=0.034 Score=61.75 Aligned_cols=114 Identities=16% Similarity=-0.033 Sum_probs=59.5
Q ss_pred CCcHHHHHHHHHHHHHHCCCe-EEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeCCeeEEEeCCCCCC
Q 004879 348 VGGLGDVVAGLGKALQKKGHL-VEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPD 426 (725)
Q Consensus 348 vGGlg~vV~~LaraL~~~GHe-V~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~GI~V~~I~~~~ps 426 (725)
+||==.....|+++|.++|++ |.++...+... .. + ....+++.++|+..
T Consensus 10 TGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e-~~----l----------------------~~~~~~~~~~I~~~--- 59 (357)
T COG0707 10 TGGHVFPALALAEELAKRGWEQVIVLGTGDGLE-AF----L----------------------VKQYGIEFELIPSG--- 59 (357)
T ss_pred CccchhHHHHHHHHHHhhCccEEEEecccccce-ee----e----------------------ccccCceEEEEecc---
Confidence 566666677799999999995 55553222211 00 0 01236667777532
Q ss_pred cccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCC
Q 004879 427 KFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNF 500 (725)
Q Consensus 427 ~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~ 500 (725)
.+.+...+....++.++......+...++ ..+||+|-+-.++.+. ++.+... +.++|++....|.
T Consensus 60 -~~~~~~~~~~~~~~~~~~~~~~~a~~il~--~~kPd~vig~Ggyvs~-P~~~Aa~-----~~~iPv~ihEqn~ 124 (357)
T COG0707 60 -GLRRKGSLKLLKAPFKLLKGVLQARKILK--KLKPDVVIGTGGYVSG-PVGIAAK-----LLGIPVIIHEQNA 124 (357)
T ss_pred -cccccCcHHHHHHHHHHHHHHHHHHHHHH--HcCCCEEEecCCcccc-HHHHHHH-----hCCCCEEEEecCC
Confidence 12222122100111222222233344555 4799999986554443 2344332 3579999988776
No 115
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.17 Score=55.58 Aligned_cols=230 Identities=17% Similarity=0.118 Sum_probs=123.2
Q ss_pred CCCceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhh-hcCCcccccCCcccccccccccchh
Q 004879 459 GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELA-SCGLDVQQLNRPDRMQDNSAHDRIN 537 (725)
Q Consensus 459 ~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~-~~Gl~~~~l~~~~~l~d~~~~~~in 537 (725)
...||+|-.+++.+.+.-+.. ..|. .+.+++++.-.||+.|. . .+. ..|. .+.+.+ -...
T Consensus 101 ~~~~~~ilvQNPP~iPtliv~-~~~~--~l~~~KfiIDWHNy~Ys--l---~l~~~~g~-~h~lV~----------l~~~ 161 (444)
T KOG2941|consen 101 LRPPDIILVQNPPSIPTLIVC-VLYS--ILTGAKFIIDWHNYGYS--L---QLKLKLGF-QHPLVR----------LVRW 161 (444)
T ss_pred ccCCcEEEEeCCCCCchHHHH-HHHH--HHhcceEEEEehhhHHH--H---HHHhhcCC-CCchHH----------HHHH
Confidence 468999999998764431111 1111 14689999999999763 0 011 1111 011100 0012
Q ss_pred hhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCcc-----CCC----CCCCCcchhhhccCccc
Q 004879 538 PLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGID-----TDA----WNPATDTFLKVQYNAND 608 (725)
Q Consensus 538 ~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGID-----~~~----f~P~~d~~l~~~ys~~d 608 (725)
+++..-+.||.-.||+..+++++..+ +|+ .+..++|.-.. .+. |.|-... ...|.+-.
T Consensus 162 ~E~~fgk~a~~nLcVT~AMr~dL~qn---Wgi--------~ra~v~YDrPps~~~~l~~~H~lf~~l~~d--~~~f~ar~ 228 (444)
T KOG2941|consen 162 LEKYFGKLADYNLCVTKAMREDLIQN---WGI--------NRAKVLYDRPPSKPTPLDEQHELFMKLAGD--HSPFRARE 228 (444)
T ss_pred HHHHhhcccccchhhHHHHHHHHHHh---cCC--------ceeEEEecCCCCCCCchhHHHHHHhhhccc--cchhhhcc
Confidence 34455567888999999999998874 232 13344432111 100 1110000 00122212
Q ss_pred ccchhhhHHHHHHHcC--CCCCCCCCC-EEEEeecCcCCCCHHHHHHHHHHh-----hc----CCcEEEEEcCCCccc--
Q 004879 609 LQGKAENKESIRKHLG--LSSADARKP-LVGCITRLVPQKGVHLIRHAIYRT-----LE----LGGQFILLGSSPVPH-- 674 (725)
Q Consensus 609 ~~gK~~~K~aLRk~lG--L~~~d~~~p-lV~fVGRL~~qKGvdlLieA~~~L-----~~----~~iqLVIvG~Gp~~~-- 674 (725)
.++|..++.++-+++. .-.-.+.+| +++....++|...+..|++|+... .+ +.+-++|-|.||..+
T Consensus 229 ~q~~~~~~taf~~k~~s~~v~~~~~~pallvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKGPlkE~Y 308 (444)
T KOG2941|consen 229 PQDKALERTAFTKKDASGDVQLLPERPALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKGPLKEKY 308 (444)
T ss_pred cccchhhhhhHhhhcccchhhhccCCCeEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCCchhHHH
Confidence 3344444444444433 111112334 667778999999999999999732 22 245678889999763
Q ss_pred ---ccH---------------H---HHHHhcCeEEEc--CCc-ccchHHHHHHcCCCc------------cccCCCCCce
Q 004879 675 ---IQV---------------Y---PILLSSFSFLRK--HIF-NICNLYIKLGQGGDL------------TVNNNCEPWL 718 (725)
Q Consensus 675 ---le~---------------~---~iyAaADIfVlP--S~~-EpfGLv~LEAMg~~~------------~V~~~~~G~l 718 (725)
+++ + .+++.||+.|+- |-. =-.|+-++--.|+++ .|.++.||++
T Consensus 309 ~~~I~~~~~~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fkcl~ELVkh~eNGlv 388 (444)
T KOG2941|consen 309 SQEIHEKNLQHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFKCLDELVKHGENGLV 388 (444)
T ss_pred HHHHHHhcccceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecchhHHHHHhcCCCceE
Confidence 111 0 899999998883 221 112333333334443 4568999998
Q ss_pred ee
Q 004879 719 HH 720 (725)
Q Consensus 719 ~~ 720 (725)
+.
T Consensus 389 F~ 390 (444)
T KOG2941|consen 389 FE 390 (444)
T ss_pred ec
Confidence 73
No 116
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.98 E-value=0.058 Score=63.86 Aligned_cols=168 Identities=29% Similarity=0.386 Sum_probs=102.1
Q ss_pred hhHHHhHHHHHHHHHHHhhcccCcccchhhhhccCCCccchhcccCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhh
Q 004879 18 IHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSV 97 (725)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (725)
-+|.-||.+|.+|++.++.....+ .|. ..++.-..|.+|=..|+..++.|..++...
T Consensus 50 ~~V~eLE~sL~eLk~q~~~~~~~~-----------~pa------------~pse~E~~Lq~E~~~L~kElE~L~~qlqaq 106 (617)
T PF15070_consen 50 SRVQELERSLSELKNQMAEPPPPE-----------PPA------------GPSEVEQQLQAEAEHLRKELESLEEQLQAQ 106 (617)
T ss_pred HHHHHHHHHHHHHHHhhcccCCcc-----------ccc------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999988754221 111 223333456666666777788888888776
Q ss_pred hhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHH
Q 004879 98 KDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELR 177 (725)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (725)
....+.+-.|-.| .+..|.+||.++..-++ ..+..+.||+...+--.-+.-.+.||.+|.
T Consensus 107 v~~ne~Ls~L~~E---qEerL~ELE~~le~~~e-----------------~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK 166 (617)
T PF15070_consen 107 VENNEQLSRLNQE---QEERLAELEEELERLQE-----------------QQEDRQKLLEQLQSDKATASRALSQNRELK 166 (617)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-----------------HHHHHHHHHhhhcccchHHHHHHHhHHHHH
Confidence 6665655555433 35667777766654333 223344455444333333455689999999
Q ss_pred HHHHHHHH---hHhhhh---hHHHhHHHHHh-----HHHHHHHHHHHHHHHhhhchHHHHHH
Q 004879 178 KKVDKLEE---SLDEAN---IYKLSSEKMQQ-----YNELMQQKMKLLEERLQRSDEEIHSY 228 (725)
Q Consensus 178 ~~~~~~~~---~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (725)
.++..|+. .|-..+ ..+|-+|...+ -+.-+++++..+++++..-+.|+.++
T Consensus 167 ~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~L 228 (617)
T PF15070_consen 167 EQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSL 228 (617)
T ss_pred HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999998 444444 45566554322 11245666666777666666666554
No 117
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=96.81 E-value=0.0068 Score=70.41 Aligned_cols=85 Identities=8% Similarity=-0.064 Sum_probs=67.9
Q ss_pred CEEEEee--cCcCCCCHHHHHHHHHHhhc--CCcEEEEEcCCCcc----cc---------c-------------------
Q 004879 633 PLVGCIT--RLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVP----HI---------Q------------------- 676 (725)
Q Consensus 633 plV~fVG--RL~~qKGvdlLieA~~~L~~--~~iqLVIvG~Gp~~----~l---------e------------------- 676 (725)
..+++++ |+ ++|-++.+++|+.++.. +++++.+.|.|... .+ +
T Consensus 320 ~~~I~v~idrL-~ek~~~~~I~av~~~~~~~p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (519)
T TIGR03713 320 ETEIGFWIDGL-SDEELQQILQQLLQYILKNPDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFSLSEQDENQPI 398 (519)
T ss_pred ceEEEEEcCCC-ChHHHHHHHHHHHHHHhhCCCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccccchhhhhhhc
Confidence 4677888 99 99999999999999864 58999999976521 00 1
Q ss_pred ----------H-----------H--HHHHhcCeEEEcCCcccchHHHHHHcCCCcc---------ccCCCCCcee
Q 004879 677 ----------V-----------Y--PILLSSFSFLRKHIFNICNLYIKLGQGGDLT---------VNNNCEPWLH 719 (725)
Q Consensus 677 ----------~-----------~--~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~---------V~~~~~G~l~ 719 (725)
. . ..|..+.++|.+|..|+|| +++||++.|.| |.++.||||.
T Consensus 399 ~~~~~~~~~~~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~-~~ieAiS~GiPqInyg~~~~V~d~~NG~li 472 (519)
T TIGR03713 399 LQTDEEQKEKERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLY-TQISGISAGIPQINKVETDYVEHNKNGYII 472 (519)
T ss_pred ccchhhcccccEEEEEecCCHHHHHHHHhhheEEEECCCCCChH-HHHHHHHcCCCeeecCCceeeEcCCCcEEe
Confidence 0 1 7899999999999999999 99999965554 4567888884
No 118
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=96.79 E-value=0.18 Score=55.60 Aligned_cols=248 Identities=14% Similarity=0.127 Sum_probs=130.9
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeee
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 412 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v 412 (725)
|||++-... +|. ..+...+.+.|.++||+|.|.+..|+... +| + ..
T Consensus 1 MkIwiDi~~-p~h------vhfFk~~I~eL~~~GheV~it~R~~~~~~-----~L--L--------------------~~ 46 (335)
T PF04007_consen 1 MKIWIDITH-PAH------VHFFKNIIRELEKRGHEVLITARDKDETE-----EL--L--------------------DL 46 (335)
T ss_pred CeEEEECCC-chH------HHHHHHHHHHHHhCCCEEEEEEeccchHH-----HH--H--------------------HH
Confidence 788887653 232 46777899999999999999998876531 11 0 01
Q ss_pred CCeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHH---HHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCC
Q 004879 413 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFS---RAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLN 489 (725)
Q Consensus 413 ~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~Fs---ravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~ 489 (725)
.|++...+.. |. ...+ .+..... ...+++++ .++|||+-++....+. .. . + ..
T Consensus 47 yg~~y~~iG~-~g------~~~~------~Kl~~~~~R~~~l~~~~~--~~~pDv~is~~s~~a~---~v-a-~----~l 102 (335)
T PF04007_consen 47 YGIDYIVIGK-HG------DSLY------GKLLESIERQYKLLKLIK--KFKPDVAISFGSPEAA---RV-A-F----GL 102 (335)
T ss_pred cCCCeEEEcC-CC------CCHH------HHHHHHHHHHHHHHHHHH--hhCCCEEEecCcHHHH---HH-H-H----Hh
Confidence 3444444432 10 1111 1111122 22333333 4689999988533222 11 1 1 24
Q ss_pred CCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCc
Q 004879 490 SARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGL 569 (725)
Q Consensus 490 ~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL 569 (725)
++|.|.-..+-.- .. ..+..+..||.+++++- +...... .+|
T Consensus 103 giP~I~f~D~e~a---~~------------------------------~~~Lt~Pla~~i~~P~~-~~~~~~~-~~G--- 144 (335)
T PF04007_consen 103 GIPSIVFNDTEHA---IA------------------------------QNRLTLPLADVIITPEA-IPKEFLK-RFG--- 144 (335)
T ss_pred CCCeEEEecCchh---hc------------------------------cceeehhcCCeeECCcc-cCHHHHH-hcC---
Confidence 8998887765210 00 00122446788887773 2222222 122
Q ss_pred ccccccCCCcEEEE-eCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCC--
Q 004879 570 HSTLNFHSKKFVGI-LNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKG-- 646 (725)
Q Consensus 570 ~~~l~~~~~Kv~vI-pNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKG-- 646 (725)
.+ -.+. +||++...|-.. |.+| ..+.+++|+. +.+.|++ |..+.+.
T Consensus 145 -------~~-~~i~~y~G~~E~ayl~~--------F~Pd---------~~vl~~lg~~----~~~yIvv--R~~~~~A~y 193 (335)
T PF04007_consen 145 -------AK-NQIRTYNGYKELAYLHP--------FKPD---------PEVLKELGLD----DEPYIVV--RPEAWKASY 193 (335)
T ss_pred -------Cc-CCEEEECCeeeEEeecC--------CCCC---------hhHHHHcCCC----CCCEEEE--EeccccCee
Confidence 11 1234 899987665321 2221 3567789965 2355532 4444322
Q ss_pred ---H-HHHHHHHHHhhcCCcEEEEEcCC-Ccccc-cH------------HHHHHhcCeEEEcCCcccchHHHHHHcCCCc
Q 004879 647 ---V-HLIRHAIYRTLELGGQFILLGSS-PVPHI-QV------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDL 708 (725)
Q Consensus 647 ---v-dlLieA~~~L~~~~iqLVIvG~G-p~~~l-e~------------~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~ 708 (725)
- ..+-+.+..+.+.+-.+|++-.. +.+.+ ++ ..++.-||++|--+ |....||.-+|.
T Consensus 194 ~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~~~~~~~~~~~~i~~~~vd~~~Ll~~a~l~Ig~g-----gTMa~EAA~LGt 268 (335)
T PF04007_consen 194 DNGKKSILPEIIEELEKYGRNVVIIPRYEDQRELFEKYGVIIPPEPVDGLDLLYYADLVIGGG-----GTMAREAALLGT 268 (335)
T ss_pred ecCccchHHHHHHHHHhhCceEEEecCCcchhhHHhccCccccCCCCCHHHHHHhcCEEEeCC-----cHHHHHHHHhCC
Confidence 1 23445566555544335555432 22211 11 17888899998744 778899876665
Q ss_pred cccC
Q 004879 709 TVNN 712 (725)
Q Consensus 709 ~V~~ 712 (725)
|.+.
T Consensus 269 PaIs 272 (335)
T PF04007_consen 269 PAIS 272 (335)
T ss_pred CEEE
Confidence 6543
No 119
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.20 E-value=0.23 Score=57.82 Aligned_cols=63 Identities=19% Similarity=0.310 Sum_probs=43.1
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhh----hhhhHHHHHHhhhhhHHhhHHHHHhhhhcc
Q 004879 66 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVK----DADERVVMLEMERSSLESSLKELESKLSIS 128 (725)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (725)
+..+-.+++.+..+...++.+++.++.++.++. +.++.+..++.+.+.+++.+..++.-....
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~ 281 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMY 281 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556778888888888888888888888887773 334445556666666666666665554433
No 120
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.93 E-value=0.39 Score=57.86 Aligned_cols=94 Identities=29% Similarity=0.351 Sum_probs=65.7
Q ss_pred HHhHHHHHHHHHHHhhcccCcccchhhhhccCCCccchhcccCcccchhhHhhhhhhhhhccchhHHHHHHHHhh----h
Q 004879 21 ELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELN----S 96 (725)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 96 (725)
.-||.++++||.||.+....|.. +...++ .+.+ .=..+..||..+|.||..|.+-+..|..... .
T Consensus 421 ~rLE~dvkkLraeLq~~Rq~E~E-LRsqis--------~l~~--~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~ 489 (697)
T PF09726_consen 421 SRLEADVKKLRAELQSSRQSEQE-LRSQIS--------SLTN--NERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQS 489 (697)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHH-HHHHHh--------hccc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35999999999999998776532 221111 0111 1136788999999999999998887765543 3
Q ss_pred hhhhhhHHHHHHhhhhhHHhhHHHHHhhh
Q 004879 97 VKDADERVVMLEMERSSLESSLKELESKL 125 (725)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (725)
....+.++....+-|..+|+.|.+-.+.-
T Consensus 490 l~~LEkrL~eE~~~R~~lEkQL~eErk~r 518 (697)
T PF09726_consen 490 LQQLEKRLAEERRQRASLEKQLQEERKAR 518 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777788888998888776543
No 121
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.84 E-value=0.68 Score=55.92 Aligned_cols=129 Identities=26% Similarity=0.363 Sum_probs=82.7
Q ss_pred hhhHHHhHHHHHHHHHHHhhcccCcccchhhhhccCCCccchhcccCcccchhhHhhhhhhhhhccchhHHHHHHHHhhh
Q 004879 17 KIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNS 96 (725)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (725)
+.+++-||-.||-|+.|+...|++- .... +-+|..|..-|..||+.+-.|+.-..+
T Consensus 338 kEr~deletdlEILKaEmeekG~~~-~~~s-----------------------s~qfkqlEqqN~rLKdalVrLRDlsA~ 393 (1243)
T KOG0971|consen 338 KERVDELETDLEILKAEMEEKGSDG-QAAS-----------------------SYQFKQLEQQNARLKDALVRLRDLSAS 393 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCC-cccc-----------------------hHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 4567778888888888888776551 1111 567888888888888877777643322
Q ss_pred hhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHH-------HH
Q 004879 97 VKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAI-------SV 169 (725)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 169 (725)
-+ --..++-||-.-..+.+.+|++.- ..|..++++++..++....|+|-|. ..
T Consensus 394 ek---~d~qK~~kelE~k~sE~~eL~r~k-----------------E~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qL 453 (1243)
T KOG0971|consen 394 EK---QDHQKLQKELEKKNSELEELRRQK-----------------ERLSRELDQAESTIADLKEQVDAALGAEEMVEQL 453 (1243)
T ss_pred HH---HHHHHHHHHHHHHhhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Confidence 21 223445555555555555554421 1567777888888887777877663 23
Q ss_pred hhhhHHHHHHHHHHHHhHhh
Q 004879 170 LQQNQELRKKVDKLEESLDE 189 (725)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~ 189 (725)
-+.|=.|.+||.-||+-.++
T Consensus 454 tdknlnlEekVklLeetv~d 473 (1243)
T KOG0971|consen 454 TDKNLNLEEKVKLLEETVGD 473 (1243)
T ss_pred HhhccCHHHHHHHHHHHHHH
Confidence 45677888888888876554
No 122
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.79 E-value=0.65 Score=54.07 Aligned_cols=138 Identities=28% Similarity=0.386 Sum_probs=65.0
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHH-----------HHHHhhhhhHHhhHHHHHhhhhcchhhhhccccc
Q 004879 70 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERV-----------VMLEMERSSLESSLKELESKLSISQEDVAKLSTL 138 (725)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (725)
-++...|++|+..|+..++.|+++|....+.-+.+ -.+.+|+..|.....++.. ++..|
T Consensus 156 ~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~----------ri~~L 225 (546)
T PF07888_consen 156 LKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQ----------RIREL 225 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH
Confidence 45555666666666666666666665544433222 2223333333333322222 23344
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhh---hhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHH
Q 004879 139 KVECKDLYEKVENLQGLLAKATKQA---DQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLE 215 (725)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (725)
+.+.+.+..|..+...++++..+.- ++--.-|+ +.|+..+..++..+.++. ..+.-++.++.++..++
T Consensus 226 Eedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk--~rLk~~~~~~~~~~~~~~-------~~~~e~e~LkeqLr~~q 296 (546)
T PF07888_consen 226 EEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELK--QRLKETVVQLKQEETQAQ-------QLQQENEALKEQLRSAQ 296 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhhhh-------hHHHHHHHHHHHHHHHH
Confidence 5555566666655555555543210 00000000 234444444443333322 22233456777777888
Q ss_pred HHhhhchHHHH
Q 004879 216 ERLQRSDEEIH 226 (725)
Q Consensus 216 ~~~~~~~~~~~ 226 (725)
++++.|..+..
T Consensus 297 e~lqaSqq~~~ 307 (546)
T PF07888_consen 297 EQLQASQQEAE 307 (546)
T ss_pred HHHHHHHHHHH
Confidence 87777755443
No 123
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.64 E-value=0.75 Score=59.46 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=20.9
Q ss_pred HHHHhhhhhHHhhHHHHHhhhhcchhh
Q 004879 105 VMLEMERSSLESSLKELESKLSISQED 131 (725)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (725)
..+.+|...++..+++|++++..+..+
T Consensus 795 ~r~~~ei~~l~~qie~l~~~l~~~~~~ 821 (1311)
T TIGR00606 795 ERFQMELKDVERKIAQQAAKLQGSDLD 821 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 556778888888888888888876664
No 124
>PRK02224 chromosome segregation protein; Provisional
Probab=95.58 E-value=0.34 Score=59.75 Aligned_cols=38 Identities=13% Similarity=0.208 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHhhcCC-cEEEEEcCCCcccccHHHHHHhcCeEEE
Q 004879 645 KGVHLIRHAIYRTLELG-GQFILLGSSPVPHIQVYPILLSSFSFLR 689 (725)
Q Consensus 645 KGvdlLieA~~~L~~~~-iqLVIvG~Gp~~~le~~~iyAaADIfVl 689 (725)
.....+.+.+..+...+ .++|++-.-+ .+...||-++.
T Consensus 827 ~~~~~~~~~l~~~~~~~~~qviiish~~-------~~~~~ad~~~~ 865 (880)
T PRK02224 827 GHVSQLVDLVESMRRLGVEQIVVVSHDD-------ELVGAADDLVR 865 (880)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEECCh-------HHHHhcCeeEE
Confidence 34555666666654434 3777776654 33344665444
No 125
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.47 E-value=1 Score=55.00 Aligned_cols=156 Identities=26% Similarity=0.329 Sum_probs=102.2
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcc----ccchhhhhhH
Q 004879 70 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKL----STLKVECKDL 145 (725)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 145 (725)
-..+..||+-|..|-+.-++||.+|.....-.+- ..+|+|--.+...+.+|++....-|.-..+| ++|+..-..|
T Consensus 263 kdRveelkedN~vLleekeMLeeQLq~lrarse~-~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL 341 (1195)
T KOG4643|consen 263 KDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG-ATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQL 341 (1195)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc-CChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456678999999999999999999877555555 8899999999999999998877666555543 4444443333
Q ss_pred ---HHHHHH-----------HHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHH------------
Q 004879 146 ---YEKVEN-----------LQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEK------------ 199 (725)
Q Consensus 146 ---~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 199 (725)
|+-..+ +|..-...|+ +.|.-.+=+|+.+-.-+..++++==|+.|+|...-.
T Consensus 342 ~~~~ellq~~se~~E~en~Sl~~e~eqLts--~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~ 419 (1195)
T KOG4643|consen 342 DGQMELLQIFSENEELENESLQVENEQLTS--DRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEI 419 (1195)
T ss_pred hhhhhHhhhhhcchhhhhhhHHHHHHHhhh--HHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHH
Confidence 433333 3333333333 668888889999999999888886677776644321
Q ss_pred -HHhHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 004879 200 -MQQYNELMQQKMKLLEERLQRSDEEIHSYV 229 (725)
Q Consensus 200 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (725)
.-+|+.+.||+. .+|+..+.+..|...++
T Consensus 420 Leeri~ql~qq~~-eled~~K~L~~E~ekl~ 449 (1195)
T KOG4643|consen 420 LEERINQLLQQLA-ELEDLEKKLQFELEKLL 449 (1195)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 234555555543 34444554444444433
No 126
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.39 E-value=0.99 Score=55.21 Aligned_cols=106 Identities=25% Similarity=0.253 Sum_probs=57.8
Q ss_pred cchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhh----hhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHh
Q 004879 127 ISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQA----DQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQ 202 (725)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (725)
.-.+-++|...++-|-|+|--|+|-|+.=+...++|- |-+-...-.+..|++.++-...++.+. ++-++...+
T Consensus 395 s~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq---~~e~e~~~q 471 (1195)
T KOG4643|consen 395 SYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQ---SLENEELDQ 471 (1195)
T ss_pred hHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHhHHHHH
Confidence 5556777888887777777777777765554433322 222233445555666666666666554 333344444
Q ss_pred HHHHHHHH----------HHHHHHHhhhchHHHHHHHHHHHHH
Q 004879 203 YNELMQQK----------MKLLEERLQRSDEEIHSYVQLYQES 235 (725)
Q Consensus 203 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (725)
.+.+..|. ++-+-.+|+.++.|+..+..++..+
T Consensus 472 ~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~el 514 (1195)
T KOG4643|consen 472 LLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNEL 514 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443 4555555555555555555444444
No 127
>PRK11637 AmiB activator; Provisional
Probab=95.27 E-value=1.4 Score=50.00 Aligned_cols=84 Identities=15% Similarity=0.179 Sum_probs=37.1
Q ss_pred hhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHH
Q 004879 69 FSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEK 148 (725)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (725)
+-++++.++.+--.++++|..++.++.+ ....+..++++-+.++..+.+++.++...+.++.++ +.+-..+-++
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~---~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l---~~eI~~~q~~ 118 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRAS---LLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDEL---NASIAKLEQQ 118 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3445555555555555555544444432 233344444444444444444444444444433322 2222334444
Q ss_pred HHHHHHHHHH
Q 004879 149 VENLQGLLAK 158 (725)
Q Consensus 149 ~~~~~~~~~~ 158 (725)
++.++..|+.
T Consensus 119 l~~~~~~l~~ 128 (428)
T PRK11637 119 QAAQERLLAA 128 (428)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 128
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=95.17 E-value=0.89 Score=54.46 Aligned_cols=148 Identities=24% Similarity=0.364 Sum_probs=76.3
Q ss_pred hhHHHhHHHHHHHHHHHhhcccCcccchhhhhccCCCccchhcccCcccchhhHhhhhhhhh----------hccchhHH
Q 004879 18 IHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTE----------NLSLKNDI 87 (725)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 87 (725)
+.+-=||++|+|||.|++....+. +.|... -|.+.++.||.| -|.||+-+
T Consensus 429 ~~~~~Le~elekLk~eilKAk~s~----------~~~~~~----------~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL 488 (762)
T PLN03229 429 TPVRELEGEVEKLKEQILKAKESS----------SKPSEL----------ALNEMIEKLKKEIDLEYTEAVIAMGLQERL 488 (762)
T ss_pred CCCccHHHHHHHHHHHHHhccccc----------CCCCCh----------HHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 445568999999999998863221 111100 123344444444 36778888
Q ss_pred HHHHHHhhhhhh--------hhhHHHHHHhhhh----------hHHhhHHHHH--hhhhcchhhhhccccchhhhhh-HH
Q 004879 88 KVLKAELNSVKD--------ADERVVMLEMERS----------SLESSLKELE--SKLSISQEDVAKLSTLKVECKD-LY 146 (725)
Q Consensus 88 ~~~~~~~~~~~~--------~~~~~~~~~~~~~----------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~ 146 (725)
..|+.+++..+- .-+.+.+|..|-. .|..++.-|- ++-...-+..++-..|+.|-+. +-
T Consensus 489 ~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~ 568 (762)
T PLN03229 489 ENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAEINKKFK 568 (762)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHH
Confidence 888877777644 2233444433321 1222222111 1111112223345555655332 12
Q ss_pred H------HHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhH
Q 004879 147 E------KVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESL 187 (725)
Q Consensus 147 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (725)
| -.+..+++++...+ +. +...-.-+++|+.||.++..-.
T Consensus 569 e~~~~~~~kek~ea~~aev~~-~g-~s~~~~~~~~lkeki~~~~~Ei 613 (762)
T PLN03229 569 EVMDRPEIKEKMEALKAEVAS-SG-ASSGDELDDDLKEKVEKMKKEI 613 (762)
T ss_pred HhcccHHHHHHHHHHHHHHHh-cC-ccccCCCCHHHHHHHHHHHHHH
Confidence 2 34455666666666 33 3334477899999999887743
No 129
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=95.15 E-value=2.3 Score=50.35 Aligned_cols=91 Identities=16% Similarity=0.139 Sum_probs=58.5
Q ss_pred HHHHHHHcCCCCCCCCCCEE-EEee-cCcC-CCCHHHHHHHHH--HhhcCCcEEEEEcCCCcc-----------c-----
Q 004879 616 KESIRKHLGLSSADARKPLV-GCIT-RLVP-QKGVHLIRHAIY--RTLELGGQFILLGSSPVP-----------H----- 674 (725)
Q Consensus 616 K~aLRk~lGL~~~d~~~plV-~fVG-RL~~-qKGvdlLieA~~--~L~~~~iqLVIvG~Gp~~-----------~----- 674 (725)
+.+.++++|+++ +.++| ++.| |-++ ..-...+++|+. .+. .+.+|++....+.. .
T Consensus 400 ~~~~r~~lgl~~---~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~-~~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~ 475 (608)
T PRK01021 400 NLSWKEQLHLPS---DKPIVAAFPGSRRGDILRNLTIQVQAFLASSLA-STHQLLVSSANPKYDHLILEVLQQEGCLHSH 475 (608)
T ss_pred HHHHHHHcCCCC---CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhc-cCeEEEEecCchhhHHHHHHHHhhcCCCCeE
Confidence 455688999963 45655 4444 5444 455677888886 443 36788775432210 0
Q ss_pred -c-c--HHHHHHhcCeEEEcCCcccchHHHHHHc--CCCccccCCCC
Q 004879 675 -I-Q--VYPILLSSFSFLRKHIFNICNLYIKLGQ--GGDLTVNNNCE 715 (725)
Q Consensus 675 -l-e--~~~iyAaADIfVlPS~~EpfGLv~LEAM--g~~~~V~~~~~ 715 (725)
+ . ...++++||+.+..| |.+-+||+ |.|.+|..-.+
T Consensus 476 ii~~~~~~~~m~aaD~aLaaS-----GTaTLEaAL~g~PmVV~YK~s 517 (608)
T PRK01021 476 IVPSQFRYELMRECDCALAKC-----GTIVLETALNQTPTIVTCQLR 517 (608)
T ss_pred EecCcchHHHHHhcCeeeecC-----CHHHHHHHHhCCCEEEEEecC
Confidence 0 1 137899999999876 99999988 77777765443
No 130
>PRK11637 AmiB activator; Provisional
Probab=95.14 E-value=2.9 Score=47.52 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=20.4
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHhhhhHHhhhh
Q 004879 218 LQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKK 252 (725)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (725)
|+....+-+..++......++.+..|..|+.+.++
T Consensus 210 L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~ 244 (428)
T PRK11637 210 LEQARNERKKTLTGLESSLQKDQQQLSELRANESR 244 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555666666666667777766665553
No 131
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=95.13 E-value=0.22 Score=49.97 Aligned_cols=41 Identities=20% Similarity=0.122 Sum_probs=28.6
Q ss_pred hhhhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCccCCCC
Q 004879 540 KGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAW 592 (725)
Q Consensus 540 k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f 592 (725)
-..+..||..++.+..-+...=. ....|+.||+-|||++.+
T Consensus 130 l~~l~~~D~~isPT~wQ~~~fP~------------~~r~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 130 LLALEQADAGISPTRWQRSQFPA------------EFRSKISVIHDGIDTDRF 170 (171)
T ss_pred HHHHHhCCcCcCCCHHHHHhCCH------------HHHcCcEEeecccchhhc
Confidence 35677789888888665443211 125799999999999754
No 132
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.04 E-value=5.8 Score=48.32 Aligned_cols=37 Identities=16% Similarity=0.154 Sum_probs=27.5
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVL 373 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VIt 373 (725)
-||+.|+..- +.-|-.+++.+|+.+|+..|..|-+|=
T Consensus 546 ~kvi~vts~~----~G~GKTt~a~nLA~~lA~~g~rvLlID 582 (754)
T TIGR01005 546 PEVVETQRPR----PVLGKSDIEANAAALIASGGKRALLID 582 (754)
T ss_pred ceEEEeecCC----CCCChhHHHHHHHHHHHhCCCeEEEEe
Confidence 3777776632 123556778889999999999999883
No 133
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.99 E-value=0.77 Score=44.70 Aligned_cols=102 Identities=30% Similarity=0.493 Sum_probs=64.9
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHhhh---hhhHHHHhh-hhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHH
Q 004879 134 KLSTLKVECKDLYEKVENLQGLLAKATKQ---ADQAISVLQ-QNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQ 209 (725)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (725)
|+..|+.|--+|.++++.++.-+..+..+ .++=|..|+ .|+.|...||++++.|.++.-----+++...-++-++.
T Consensus 1 Km~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~r 80 (143)
T PF12718_consen 1 KMQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNR 80 (143)
T ss_pred ChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHh
Confidence 34556666667777777777665544332 333344443 46777777777777777766655555555555667777
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHH
Q 004879 210 KMKLLEERLQRSDEEIHSYVQLYQES 235 (725)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (725)
|+..||+.|..++.-......+..+.
T Consensus 81 riq~LEeele~ae~~L~e~~ekl~e~ 106 (143)
T PF12718_consen 81 RIQLLEEELEEAEKKLKETTEKLREA 106 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788877777777666666555544
No 134
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=94.90 E-value=2 Score=54.12 Aligned_cols=18 Identities=22% Similarity=0.229 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHCCCeEEEEe
Q 004879 354 VVAGLGKALQKKGHLVEIVL 373 (725)
Q Consensus 354 vV~~LaraL~~~GHeV~VIt 373 (725)
....+.+.|. |....+..
T Consensus 1030 ~f~~~~~~l~--~~~~~l~~ 1047 (1164)
T TIGR02169 1030 NFNEIFAELS--GGTGELIL 1047 (1164)
T ss_pred HHHHHHHHHh--CCeEEEEe
Confidence 3333444444 55666554
No 135
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.84 E-value=2.5 Score=55.33 Aligned_cols=178 Identities=20% Similarity=0.240 Sum_probs=106.6
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhh-
Q 004879 66 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKD- 144 (725)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 144 (725)
.-.++.++++++.|+-.+..-+...-..+..+++ -+++++..+.++...-|+.+..-.+++.+|.-|+-+...
T Consensus 999 ~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~------dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~ 1072 (1822)
T KOG4674|consen 999 LLDLSREISSLQNELKSLLKAASQANEQIEDLQN------DLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKC 1072 (1822)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356777777777776665544443333333322 233444444444444444444444444444444433333
Q ss_pred ------------------------HHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhh--hhhHHHhHH
Q 004879 145 ------------------------LYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDE--ANIYKLSSE 198 (725)
Q Consensus 145 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 198 (725)
|-++=..|...+....+ +......||.-|+++|+.+-.-..+ ...-++...
T Consensus 1073 ~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~---~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~s 1149 (1822)
T KOG4674|consen 1073 NDELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKK---RIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLS 1149 (1822)
T ss_pred HHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhhccccccccchH
Confidence 44444444444444333 3456788999999999988776553 233344466
Q ss_pred HHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhhhHHhhhh
Q 004879 199 KMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKK 252 (725)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (725)
.+++|+-.++.-...++-+++-+..|+..|-+.+..+=+.-++....|..+...
T Consensus 1150 dL~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~ 1203 (1822)
T KOG4674|consen 1150 DLQNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERAS 1203 (1822)
T ss_pred HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999887644444444444444443
No 136
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=94.69 E-value=1.8 Score=46.05 Aligned_cols=68 Identities=12% Similarity=0.051 Sum_probs=45.5
Q ss_pred CCCEEEEeecCcCCCCHHHHHHHHHHhhcCCcEEEEEcCCCcc----c-----cc-H--HHHHHhcCeEEEcCCcccchH
Q 004879 631 RKPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPVP----H-----IQ-V--YPILLSSFSFLRKHIFNICNL 698 (725)
Q Consensus 631 ~~plV~fVGRL~~qKGvdlLieA~~~L~~~~iqLVIvG~Gp~~----~-----le-~--~~iyAaADIfVlPS~~EpfGL 698 (725)
...+++++|..... .+++++..+. +.+|+++|.+... . +. . ..++++||++|..+ |.
T Consensus 192 ~~~iLv~~gg~~~~----~~~~~l~~~~--~~~~~v~g~~~~~~~~~ni~~~~~~~~~~~~~m~~ad~vIs~~-----G~ 260 (318)
T PF13528_consen 192 EPKILVYFGGGGPG----DLIEALKALP--DYQFIVFGPNAADPRPGNIHVRPFSTPDFAELMAAADLVISKG-----GY 260 (318)
T ss_pred CCEEEEEeCCCcHH----HHHHHHHhCC--CCeEEEEcCCcccccCCCEEEeecChHHHHHHHHhCCEEEECC-----CH
Confidence 34577888887666 5677776643 5788888876411 1 11 1 28999999999965 44
Q ss_pred H-HHHHcCCCcc
Q 004879 699 Y-IKLGQGGDLT 709 (725)
Q Consensus 699 v-~LEAMg~~~~ 709 (725)
+ .+||+.++.|
T Consensus 261 ~t~~Ea~~~g~P 272 (318)
T PF13528_consen 261 TTISEALALGKP 272 (318)
T ss_pred HHHHHHHHcCCC
Confidence 4 8898855444
No 137
>PRK02224 chromosome segregation protein; Provisional
Probab=94.42 E-value=3.2 Score=51.25 Aligned_cols=14 Identities=29% Similarity=0.404 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 004879 145 LYEKVENLQGLLAK 158 (725)
Q Consensus 145 ~~~~~~~~~~~~~~ 158 (725)
+-++.+.|+..++.
T Consensus 319 l~~k~~el~~~l~~ 332 (880)
T PRK02224 319 LEDRDEELRDRLEE 332 (880)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444455555544
No 138
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.37 E-value=3.1 Score=53.89 Aligned_cols=94 Identities=15% Similarity=0.130 Sum_probs=54.1
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHH
Q 004879 70 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKV 149 (725)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (725)
..+++.+.++-..+++.|..|+.++.++.+....+..-.+.|..|+..|.+|...+....+.+.+ ++-++..+-.++
T Consensus 842 ~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~---~~~~~~~~~~~~ 918 (1311)
T TIGR00606 842 VSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKD---AKEQDSPLETFL 918 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhHHH
Confidence 33334445555556666666666666655555555555557777888888888777666666554 333444455555
Q ss_pred HHHHHHHHHHhhhhhhH
Q 004879 150 ENLQGLLAKATKQADQA 166 (725)
Q Consensus 150 ~~~~~~~~~~~~~~~~~ 166 (725)
+.++.-++....+.+..
T Consensus 919 ~~~~~~~~~~~~~~~~~ 935 (1311)
T TIGR00606 919 EKDQQEKEELISSKETS 935 (1311)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555444444333
No 139
>PRK03918 chromosome segregation protein; Provisional
Probab=94.36 E-value=5.2 Score=49.34 Aligned_cols=25 Identities=16% Similarity=0.093 Sum_probs=12.5
Q ss_pred CHHHHHHHHHHhhcCCcEEEEEcCC
Q 004879 646 GVHLIRHAIYRTLELGGQFILLGSS 670 (725)
Q Consensus 646 GvdlLieA~~~L~~~~iqLVIvG~G 670 (725)
+...+.+++..+...+.+++++-.-
T Consensus 829 ~~~~l~~~l~~~~~~~~~iiiith~ 853 (880)
T PRK03918 829 RRRKLVDIMERYLRKIPQVIIVSHD 853 (880)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEECC
Confidence 3444555555544334455555543
No 140
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.29 E-value=2.2 Score=50.81 Aligned_cols=166 Identities=26% Similarity=0.355 Sum_probs=87.2
Q ss_pred hhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhh------hhhHHHH
Q 004879 75 SLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVE------CKDLYEK 148 (725)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 148 (725)
-|+.|+..+++-+..|..++..+++-.+... ..-..|+.+|.+|..++......-..-+|-..| -..|...
T Consensus 19 ~lk~e~a~~qqr~~qmseev~~L~eEk~~~~---~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kE 95 (617)
T PF15070_consen 19 QLKEESAQWQQRMQQMSEEVRTLKEEKEHDI---SRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKE 95 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHH
Confidence 4677777777777777666655544332211 112346666777777666544333333333333 3444444
Q ss_pred HHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhh-----hhHHH-----------hHHHHHhHHHHHHHHHH
Q 004879 149 VENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEA-----NIYKL-----------SSEKMQQYNELMQQKMK 212 (725)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~~~~~ 212 (725)
+++|...+..-.. -.+....| |++...++..||..|++- +.-++ |+---| |.-+|+++.
T Consensus 96 lE~L~~qlqaqv~-~ne~Ls~L--~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQ--N~eLK~QL~ 170 (617)
T PF15070_consen 96 LESLEEQLQAQVE-NNEQLSRL--NQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQ--NRELKEQLA 170 (617)
T ss_pred HHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHh--HHHHHHHHH
Confidence 5555444432111 11122222 222222333333333221 11111 111112 356789999
Q ss_pred HHHHHhhhchHHH---HHHHHHHHHHHHHHHHHhhhhHH
Q 004879 213 LLEERLQRSDEEI---HSYVQLYQESVKEFQDTLHSLKE 248 (725)
Q Consensus 213 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 248 (725)
.|++.|-+..+++ .|-|+.=+.-.++++..|..+++
T Consensus 171 Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~ 209 (617)
T PF15070_consen 171 ELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQE 209 (617)
T ss_pred HHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888887 67777777777888888887654
No 141
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.18 E-value=2.2 Score=56.48 Aligned_cols=103 Identities=30% Similarity=0.368 Sum_probs=63.1
Q ss_pred cCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhH--------HHHHHhh---hhhHHhhHHHHHhhhhcchh
Q 004879 62 NNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADER--------VVMLEME---RSSLESSLKELESKLSISQE 130 (725)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 130 (725)
.++.+-.|.+|=..+.+-+..|.+|++..+.+....+..-.+ -..||+| |..++...+.||+.+..+|+
T Consensus 976 ~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e 1055 (1930)
T KOG0161|consen 976 LDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQE 1055 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344555666666667777777888888877777665544332 2334444 44588888888888888888
Q ss_pred hhhccccch-----------hhhhhHHHHHHHHHHHHHHHhhhhh
Q 004879 131 DVAKLSTLK-----------VECKDLYEKVENLQGLLAKATKQAD 164 (725)
Q Consensus 131 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (725)
.+..+...+ .|--.+..++++++.++..++++..
T Consensus 1056 ~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~ 1100 (1930)
T KOG0161|consen 1056 SIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIK 1100 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 877543322 2223344555555555555555544
No 142
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.12 E-value=5.4 Score=46.68 Aligned_cols=167 Identities=19% Similarity=0.286 Sum_probs=80.0
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhh-------hHHHHH--Hhhhhh------HHhhHHHHHhhhhcchhhh
Q 004879 68 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDAD-------ERVVML--EMERSS------LESSLKELESKLSISQEDV 132 (725)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~--~~~~~~------~~~~~~~~~~~~~~~~~~~ 132 (725)
.+.+|.+.|+.++..++..|..|...+..+.... .++..+ ++|... |...+.+++..+..++..-
T Consensus 203 ~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~ 282 (546)
T PF07888_consen 203 ELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQ 282 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 4566666766666655555555555544443222 111111 222211 2223333333344444444
Q ss_pred hccccchhhhhhHHH-------HHHHHHHHHHHHhhhhhhHHHHhhh----hHHHHHHHHHHHHhHhhhhhHHHhHHHHH
Q 004879 133 AKLSTLKVECKDLYE-------KVENLQGLLAKATKQADQAISVLQQ----NQELRKKVDKLEESLDEANIYKLSSEKMQ 201 (725)
Q Consensus 133 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (725)
.++..|+.+...+-+ +++-|..-|..+.+.-|+.+.-|-+ +.+|..++......|+++. -...
T Consensus 283 ~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~------~q~~ 356 (546)
T PF07888_consen 283 QENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGR------SQWA 356 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH------HHHH
Confidence 444455554444433 3444555555555555665554432 3333333333333333332 1112
Q ss_pred hHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 004879 202 QYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQ 240 (725)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (725)
+.-.-+++-+.+..+++.++..|++..=+-|++.-.|=|
T Consensus 357 qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~q 395 (546)
T PF07888_consen 357 QEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQ 395 (546)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222244455666667777888888777777766644444
No 143
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.10 E-value=4.1 Score=46.95 Aligned_cols=19 Identities=11% Similarity=0.377 Sum_probs=14.9
Q ss_pred hHHHhHHHHHHHHHHHhhc
Q 004879 19 HVELLEDQLQKLQHELTHR 37 (725)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~ 37 (725)
-.+.+++|+.+++.+|...
T Consensus 162 ~~~fl~~ql~~~~~~L~~a 180 (498)
T TIGR03007 162 AQRFIDEQIKTYEKKLEAA 180 (498)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888764
No 144
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.06 E-value=3.9 Score=39.88 Aligned_cols=45 Identities=24% Similarity=0.457 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhh
Q 004879 147 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEAN 191 (725)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (725)
+.|+.++.-|..+...++.+-...+.+..|.++|..||+.|++++
T Consensus 49 ~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae 93 (143)
T PF12718_consen 49 EELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAE 93 (143)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHH
Confidence 445555555556666666665566666789999999999988765
No 145
>PRK09039 hypothetical protein; Validated
Probab=94.04 E-value=1.1 Score=49.60 Aligned_cols=41 Identities=29% Similarity=0.387 Sum_probs=23.7
Q ss_pred hhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHH
Q 004879 69 FSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLK 119 (725)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (725)
|++-|..=+..+..|...+..++.++. .++.+|+.|++.+.
T Consensus 65 L~e~L~le~~~~~~l~~~l~~l~~~l~----------~a~~~r~~Le~~~~ 105 (343)
T PRK09039 65 LADLLSLERQGNQDLQDSVANLRASLS----------AAEAERSRLQALLA 105 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHHHHHh
Confidence 454455445556666666666666555 55666666555544
No 146
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=93.93 E-value=5.8 Score=52.06 Aligned_cols=210 Identities=24% Similarity=0.335 Sum_probs=122.7
Q ss_pred hhhHHhhhhhh----hHHHhHHHHHHHHHHHhhcccCcccchhhhhccCCCccchhcccCcccchhhHhhhhhhhhhccc
Q 004879 8 ARIRVAAQEKI----HVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSL 83 (725)
Q Consensus 8 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (725)
.++.++-+++. .|.+++-.+..|+-.|....+.-...+. . +.....+-.-+.+++.|++-|+.|
T Consensus 1167 tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~-------s-----~~e~~~i~~~v~~vNll~EsN~~L 1234 (1822)
T KOG4674|consen 1167 TKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAV-------S-----DDEHKEILEKVEEVNLLRESNKVL 1234 (1822)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh-------h-----hhhhhHHHHHHHHHHHHHHhHHHH
Confidence 34455555543 4677778888888777766544211110 0 122333455678899999999999
Q ss_pred hhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhc--------------------------ccc
Q 004879 84 KNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAK--------------------------LST 137 (725)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~ 137 (725)
+++.+..-..+ ++-.+.+.+++.+-+-|+..+.+|.+++..-++++-+ +..
T Consensus 1235 Ree~~~~~~k~---qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~k 1311 (1822)
T KOG4674|consen 1235 REENEANLEKI---QELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEK 1311 (1822)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 98877665554 7777888888888888888888888777654444333 334
Q ss_pred chhhhhhHHHHHHHHHHHHHHHh-----------hhhhhHHHHhh----hhHHHHHHHHHHHHhHhhhhhHHHhHHHHHh
Q 004879 138 LKVECKDLYEKVENLQGLLAKAT-----------KQADQAISVLQ----QNQELRKKVDKLEESLDEANIYKLSSEKMQQ 202 (725)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (725)
|+-||..|=++.++.+.+.+.+. +|.|.-..--+ +-.++.++-++|++++.+.+--++.-.+.-.
T Consensus 1312 L~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q~~el~~~~~ 1391 (1822)
T KOG4674|consen 1312 LKSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQELELSDKKK 1391 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55577777666666555544332 22322211111 2234556666777777776666444444444
Q ss_pred HHHHHH----HHHHHHHHHhhhchHHHHHHHHHHH
Q 004879 203 YNELMQ----QKMKLLEERLQRSDEEIHSYVQLYQ 233 (725)
Q Consensus 203 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (725)
..++++ +++..+.+++. +..|++++.+...
T Consensus 1392 ~~~~~~e~t~rk~e~~~~k~~-~~~e~~sl~eeL~ 1425 (1822)
T KOG4674|consen 1392 AHELMQEDTSRKLEKLKEKLE-LSEELESLKEELE 1425 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHH
Confidence 555555 33333333332 3366666555543
No 147
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.90 E-value=3.3 Score=48.25 Aligned_cols=53 Identities=23% Similarity=0.460 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHH
Q 004879 172 QNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQL 231 (725)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (725)
+-.+|+.+++++++.+.+..-. ++++.+ ++.++..++..+...+..+.++++.
T Consensus 307 ~i~~l~~~l~~l~~~i~~~~~~------~~~~~~-~~~~i~el~~~i~~~~~~i~~~~~~ 359 (562)
T PHA02562 307 KLKELQHSLEKLDTAIDELEEI------MDEFNE-QSKKLLELKNKISTNKQSLITLVDK 359 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555432211 112222 3555555555555555555554333
No 148
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=93.89 E-value=0.29 Score=55.94 Aligned_cols=63 Identities=6% Similarity=-0.077 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhc--CCcEEEEEcCCCc--ccccH------------------HHHHHhcCeEEEcCCcccchHHHHHHcC
Q 004879 648 HLIRHAIYRTLE--LGGQFILLGSSPV--PHIQV------------------YPILLSSFSFLRKHIFNICNLYIKLGQG 705 (725)
Q Consensus 648 dlLieA~~~L~~--~~iqLVIvG~Gp~--~~le~------------------~~iyAaADIfVlPS~~EpfGLv~LEAMg 705 (725)
+-.++++..+.+ ++++|-| |.+.. +.+.+ ..+|..||+++-.|..|+||++++||++
T Consensus 291 s~~I~~i~~Lv~~lPd~~f~I-ga~te~s~kL~~L~~y~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~ 369 (438)
T TIGR02919 291 SDQIEHLEEIVQALPDYHFHI-AALTEMSSKLMSLDKYDNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFE 369 (438)
T ss_pred HHHHHHHHHHHHhCCCcEEEE-EecCcccHHHHHHHhcCCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHH
Confidence 788999988876 5899998 77654 22211 1899999999999999999999999997
Q ss_pred CCcccc
Q 004879 706 GDLTVN 711 (725)
Q Consensus 706 ~~~~V~ 711 (725)
-+.||+
T Consensus 370 ~G~pI~ 375 (438)
T TIGR02919 370 YNLLIL 375 (438)
T ss_pred cCCcEE
Confidence 777764
No 149
>PF15294 Leu_zip: Leucine zipper
Probab=93.84 E-value=1.8 Score=46.59 Aligned_cols=90 Identities=32% Similarity=0.357 Sum_probs=61.3
Q ss_pred cccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhh
Q 004879 64 SEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECK 143 (725)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (725)
|..--+.+|.+.|++||..||+-+..+..+-.. .=+|++-|++.|++|.. ....+.+-..+..-..+-.
T Consensus 125 g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~----------~l~Ek~kl~~~L~~lq~-~~~~~~~k~~~~~~~q~l~ 193 (278)
T PF15294_consen 125 GGSELLNKEIDRLQEENEKLKERLKSLEKQATS----------ALDEKSKLEAQLKELQD-EQGDQKGKKDLSFKAQDLS 193 (278)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH-HHHhhhccccccccccchh
Confidence 445568899999999999999988877655433 34578889999999988 3333333333333344445
Q ss_pred hHHHHHHHHHHHHHHHhhhhh
Q 004879 144 DLYEKVENLQGLLAKATKQAD 164 (725)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~ 164 (725)
+|-.+++.+...+.++.+.-.
T Consensus 194 dLE~k~a~lK~e~ek~~~d~~ 214 (278)
T PF15294_consen 194 DLENKMAALKSELEKALQDKE 214 (278)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 677788888777777655444
No 150
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=93.78 E-value=3.2 Score=49.13 Aligned_cols=175 Identities=20% Similarity=0.251 Sum_probs=92.6
Q ss_pred ccchhhHhhhhhhhhhccchhHHHHHHHHhhh----hhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhc------
Q 004879 65 EIHSFSKELDSLKTENLSLKNDIKVLKAELNS----VKDADERVVMLEMERSSLESSLKELESKLSISQEDVAK------ 134 (725)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 134 (725)
-|..|-.|=..|-.+-.---+-|..|+++..+ ++...+-|-.|+-|-.-|++.|++=|.-=.--|+.|-|
T Consensus 454 ~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~ 533 (961)
T KOG4673|consen 454 IINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELT 533 (961)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444556666665533 45556677777777777777776433322222333322
Q ss_pred -----cccchhhhhhHHHHHHHHHHHHHHHhhhh--hh----------HHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhH
Q 004879 135 -----LSTLKVECKDLYEKVENLQGLLAKATKQA--DQ----------AISVLQQNQELRKKVDKLEESLDEANIYKLSS 197 (725)
Q Consensus 135 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (725)
++.++....++-++...+|+-+|.|.+.- .. --+..||--|||.++.+-|.++..-.
T Consensus 534 rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrE------ 607 (961)
T KOG4673|consen 534 RQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARRE------ 607 (961)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 23344444567777888888877776511 11 12344555566666666555554321
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhh
Q 004879 198 EKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHS 245 (725)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (725)
+-+|--+.-+|+|+.+-|-|-+.+-.+.-+--.-...-|+..|.||++
T Consensus 608 d~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~ 655 (961)
T KOG4673|consen 608 DMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSK 655 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhh
Confidence 122335566778887777654444333222111122235556888876
No 151
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.40 E-value=2.4 Score=52.84 Aligned_cols=86 Identities=24% Similarity=0.334 Sum_probs=58.6
Q ss_pred HhhhhhhhHHHhHHHHHHHHHHHhhcccCcccchhhhhccCCCccchhcccCcccchhhHhhhhhhhhhccchhHHHHHH
Q 004879 12 VAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLK 91 (725)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (725)
+..--+.-|+-+|.+|++.++.+-+- .+.+|.+-+.+..+++.-..|++.++.+-
T Consensus 772 ~t~~s~~~v~~le~~l~~~~~~~~~~-------------------------~~~~~~~ee~~~~lr~~~~~l~~~l~~~~ 826 (1293)
T KOG0996|consen 772 VTGVSKESVEKLERALSKMSDKARQH-------------------------QEQLHELEERVRKLRERIPELENRLEKLT 826 (1293)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHhhHHHHhHHHHHH
Confidence 34445667888999999888876652 34577888888888888888888888777
Q ss_pred HHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhh
Q 004879 92 AELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDV 132 (725)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (725)
.+...++. +-..|++.++++|+.....-.|.
T Consensus 827 ~~~k~~~~----------~~~~l~~~i~~~E~~~~k~~~d~ 857 (1293)
T KOG0996|consen 827 ASVKRLAE----------LIEYLESQIAELEAAVLKKVVDK 857 (1293)
T ss_pred HHHHHHHH----------HHHHHHHHHHHHHHHhhhccCcH
Confidence 76666554 33456666666666644333333
No 152
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.38 E-value=8.7 Score=50.38 Aligned_cols=268 Identities=16% Similarity=0.229 Sum_probs=143.0
Q ss_pred cccchhhhhHHhhhhhhhHHHhHHHHHHHHHHHhhcccCcccchhhhhccCCCccchhcccCcccchhhHhhhhhhhhhc
Q 004879 2 RLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENL 81 (725)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (725)
|++|.++++.-|.+.+--+.=....|..|.+.|..-..+ -++++.++.+-.
T Consensus 895 ~~~~~~~~~~~~~~a~~y~~~~~~~L~qLE~~l~~L~~D-----------------------------p~~~e~lr~e~~ 945 (1486)
T PRK04863 895 RVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSVLQSD-----------------------------PEQFEQLKQDYQ 945 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------------------------HHHHHHHHHHHH
Confidence 445666666666666655555666666666666552211 467888888888
Q ss_pred cchhHHHHHHHHhhhhhhhhhHHHHHH---------hhhhh---HHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHH
Q 004879 82 SLKNDIKVLKAELNSVKDADERVVMLE---------MERSS---LESSLKELESKLSISQEDVAKLSTLKVECKDLYEKV 149 (725)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (725)
..+...+.+++++-.+++-..+-.-+. ++-.+ |+.+++.+|+.. ....++.
T Consensus 946 ~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~l~~~~~~~~~Le~~Le~iE~~~-----------------~~areql 1008 (1486)
T PRK04863 946 QAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQER-----------------TRAREQL 1008 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHhhcchhhhHHHHHHHHHHHHHH-----------------HHHHHHH
Confidence 888888888888887777666554433 22111 233333333222 2233333
Q ss_pred HHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhH---------HHhHHHHHhHHHHHHHHHHHHHHHhhh
Q 004879 150 ENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIY---------KLSSEKMQQYNELMQQKMKLLEERLQR 220 (725)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (725)
+..+..+.++.+.. ...-...+.+++.+.+++..|.+-.|- ...++.+.+-+--.+.|-..+|-.+-.
T Consensus 1009 ~qaq~q~~q~~q~l---~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 1085 (1486)
T PRK04863 1009 RQAQAQLAQYNQVL---ASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHARLSANRSRRNQLEKQLTF 1085 (1486)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33444433332222 223334445666666666666542221 112344555556666777777777777
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhHHhhhhhccCCCCCCCChHHHHHHHHH--Hhhh---hhcccCChHHHHHHHHHH
Q 004879 221 SDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLI--IDGW---LLEKKLSTSEAKLLREMV 295 (725)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--~d~~---~~~~~~~~~~~~~~~~~~ 295 (725)
...||.++-+++..+-++.....+.+..-.+ -|...|.. =+|. +..+++.+..|-.||.|.
T Consensus 1086 re~EIe~L~kkL~~~~~e~~~~re~I~~aK~--------------~W~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1151 (1486)
T PRK04863 1086 CEAEMDNLTKKLRKLERDYHEMREQVVNAKA--------------GWCAVLRLVKDNGVERRLHRRELAYLSADELRSMS 1151 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhcChhhhhhHhhhhccCchhhHHHH
Confidence 7788888777776665555444444433333 28766541 1222 344555666666666654
Q ss_pred HhhcCCchhhhhhhhhhchhhHHHHhhhccCCCCCCCCeEEEE
Q 004879 296 WKRNGRIRDAYMECKEKNEHEAISTFLKLTSSSISSGLHVIHI 338 (725)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~MkILhI 338 (725)
=+.-.... -...+.+.|...+.++.-++.|.-||.+.
T Consensus 1152 ~~~~~~l~------~a~~~~~~~~~~~~~~~~~~~~e~~~~~~ 1188 (1486)
T PRK04863 1152 DKALGALR------LAVADNEHLRDVLRLSEDPKRPERKVQFY 1188 (1486)
T ss_pred HHHHHHHH------HhccCcHHHHHHHhhccCCCchhHHHhHH
Confidence 32222111 11234455655555554445555454443
No 153
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=93.32 E-value=5.7 Score=47.85 Aligned_cols=70 Identities=26% Similarity=0.398 Sum_probs=44.4
Q ss_pred hhhhhHHHhHHHHHHHHHHHhhcccCcccchhhhhccCCCccchhcccCcccchhhHhhhhhhhhhccchhHHHHHHHHh
Q 004879 15 QEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAEL 94 (725)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (725)
|.++..|-+-..++++-+||+...-. +| -..+++-..+..+.++-++|.++-+||..+++.++.+-.++
T Consensus 138 e~etelE~~~srlh~le~eLsAk~~e------If-----~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~ 206 (1265)
T KOG0976|consen 138 ENEIEIENLNSRLHKLEDELSAKAHD------IF-----MIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKF 206 (1265)
T ss_pred HHHHHHHhhHHHHHHHHHHHhhhhHH------HH-----HHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666677777776654211 11 12223334566788899999999999999988877655544
Q ss_pred h
Q 004879 95 N 95 (725)
Q Consensus 95 ~ 95 (725)
.
T Consensus 207 ~ 207 (1265)
T KOG0976|consen 207 K 207 (1265)
T ss_pred H
Confidence 3
No 154
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=93.22 E-value=12 Score=47.02 Aligned_cols=12 Identities=0% Similarity=-0.064 Sum_probs=6.7
Q ss_pred CceEEEECCCch
Q 004879 461 QPDIIHCHDWQT 472 (725)
Q Consensus 461 kPDIIH~Hdw~s 472 (725)
.|+++-+-.+.+
T Consensus 1111 ~~~~~~lDE~~~ 1122 (1179)
T TIGR02168 1111 PAPFCILDEVDA 1122 (1179)
T ss_pred CCCeEEecCccc
Confidence 456666655443
No 155
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=93.18 E-value=11 Score=47.30 Aligned_cols=11 Identities=36% Similarity=0.703 Sum_probs=4.4
Q ss_pred hHHHHHHHHHH
Q 004879 23 LEDQLQKLQHE 33 (725)
Q Consensus 23 ~~~~~~~~~~~ 33 (725)
++.+++.++++
T Consensus 703 ~~~~l~~l~~~ 713 (1179)
T TIGR02168 703 LRKELEELEEE 713 (1179)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 156
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=93.11 E-value=10 Score=48.61 Aligned_cols=68 Identities=28% Similarity=0.423 Sum_probs=34.8
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhh----hhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhh
Q 004879 66 IHSFSKELDSLKTENLSLKNDIKVLKAELN----SVKDADERVVMLEMERSSLESSLKELESKLSISQEDVA 133 (725)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (725)
+..+...+..++.....++.+++.++.++. ..+....++-.++.|.+.+...+.++..++...++++.
T Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 768 (1163)
T COG1196 697 LRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELE 768 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666666665554 22333444445555555544444444444444444433
No 157
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=93.02 E-value=6.2 Score=52.48 Aligned_cols=100 Identities=36% Similarity=0.500 Sum_probs=60.8
Q ss_pred HHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcc----ccchhhhhhHHHHHHHHHHHHHHHhhhhhh
Q 004879 90 LKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKL----STLKVECKDLYEKVENLQGLLAKATKQADQ 165 (725)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (725)
|+++-...++.++....+-+++..++..++++++++...++-...+ ..++.+|.++-+.++.+..-+.++.
T Consensus 882 l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~----- 956 (1930)
T KOG0161|consen 882 LQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLE----- 956 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 5556666677888888888888888888998888888777654433 3344556666555655555555532
Q ss_pred HHHHhhhhHHHHHHHHHHHHhHh--hhhhHHHhHHH
Q 004879 166 AISVLQQNQELRKKVDKLEESLD--EANIYKLSSEK 199 (725)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 199 (725)
...+.+..+|.+|++-+. +-++.||..++
T Consensus 957 -----~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kek 987 (1930)
T KOG0161|consen 957 -----LEKNAAENKLKNLEEEINSLDENISKLSKEK 987 (1930)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233444455555544333 23444554443
No 158
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=92.84 E-value=0.29 Score=43.85 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=26.7
Q ss_pred CCCceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCC
Q 004879 459 GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNF 500 (725)
Q Consensus 459 ~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~ 500 (725)
+++.||||.|...+.+..-..+- + +..|.++|+|=|.+
T Consensus 48 rE~I~IVHgH~a~S~l~hE~i~h--A--~~mGlktVfTDHSL 85 (90)
T PF08288_consen 48 RERIDIVHGHQAFSTLCHEAILH--A--RTMGLKTVFTDHSL 85 (90)
T ss_pred HcCeeEEEeehhhhHHHHHHHHH--H--HhCCCcEEeecccc
Confidence 57999999998766654222221 1 24689999999986
No 159
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=92.78 E-value=4.3 Score=47.55 Aligned_cols=17 Identities=29% Similarity=0.573 Sum_probs=13.0
Q ss_pred HHhHHHHHHHHHHHhhc
Q 004879 21 ELLEDQLQKLQHELTHR 37 (725)
Q Consensus 21 ~~~~~~~~~~~~~~~~~ 37 (725)
+..-++|+++|.|++..
T Consensus 133 ~~~k~EL~~lr~e~~~~ 149 (522)
T PF05701_consen 133 DSVKQELEKLRQELASA 149 (522)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44567899999998774
No 160
>PRK03918 chromosome segregation protein; Provisional
Probab=92.71 E-value=7.6 Score=47.91 Aligned_cols=62 Identities=21% Similarity=0.260 Sum_probs=38.6
Q ss_pred hhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcc
Q 004879 74 DSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKL 135 (725)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (725)
+.+++-...++..+..++..+....+..+.+..++++.+.+.+.+..++.++...++-..++
T Consensus 165 ~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~ 226 (880)
T PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKL 226 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455577777777777777777777777666666666666666655555554444333
No 161
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=92.65 E-value=3.1 Score=47.28 Aligned_cols=138 Identities=21% Similarity=0.250 Sum_probs=88.1
Q ss_pred cccCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccch
Q 004879 60 VLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLK 139 (725)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (725)
..++.-+|-+..+.+.||++|.-|-+-|+.-...=...+.++|+-..|...--.++++.+.|++|. |+-.-+++.|+
T Consensus 260 ~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~---~~~~g~l~kl~ 336 (622)
T COG5185 260 LGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKS---QEWPGKLEKLK 336 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---HhcchHHHHHH
Confidence 344556777777888888888877777777666666667777777777766666777777777764 33334444455
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhh
Q 004879 140 VECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQ 219 (725)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (725)
.||.--= .+-+-||.+.|.|...++.-.|+--- .-..+++|.++.-| |+
T Consensus 337 ~eie~kE------------------------eei~~L~~~~d~L~~q~~kq~Is~e~------fe~mn~Ere~L~re-L~ 385 (622)
T COG5185 337 SEIELKE------------------------EEIKALQSNIDELHKQLRKQGISTEQ------FELMNQEREKLTRE-LD 385 (622)
T ss_pred HHHHHHH------------------------HHHHHHHhhHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHH-HH
Confidence 5543222 22344566677777777777765332 33467788887777 77
Q ss_pred hchHHHHHHHHH
Q 004879 220 RSDEEIHSYVQL 231 (725)
Q Consensus 220 ~~~~~~~~~~~~ 231 (725)
+.+-++.++-+.
T Consensus 386 ~i~~~~~~L~k~ 397 (622)
T COG5185 386 KINIQSDKLTKS 397 (622)
T ss_pred HhcchHHHHHHH
Confidence 777666665443
No 162
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=92.64 E-value=20 Score=43.66 Aligned_cols=38 Identities=13% Similarity=0.116 Sum_probs=29.4
Q ss_pred CCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Q 004879 332 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVL 373 (725)
Q Consensus 332 ~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VIt 373 (725)
+-||+.|++.. +.-|-..++.+||.+|+..|..|-+|=
T Consensus 530 ~~kvI~vtS~~----~g~GKTtva~nLA~~la~~G~rVLlID 567 (726)
T PRK09841 530 ENNILMITGAT----PDSGKTFVSSTLAAVIAQSDQKVLFID 567 (726)
T ss_pred CCeEEEEecCC----CCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 34788887642 134667888999999999999999883
No 163
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.60 E-value=11 Score=49.62 Aligned_cols=227 Identities=18% Similarity=0.245 Sum_probs=109.9
Q ss_pred hhhh--HHHhHHHHHHHHHHHhhcccCcccchhhhhccCCCccchhcccCcccchhhHhhhhhhhhhccchhHHHHHHHH
Q 004879 16 EKIH--VELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAE 93 (725)
Q Consensus 16 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (725)
.+++ ++-|++.+...|.-+.--.++ -+..++|-+=-.+. ++.++.+=..| .+|.-.+=||=.-.| +..+..
T Consensus 226 ~~v~~~i~~m~~~l~~~r~t~~~~~~t-q~drdlFk~lI~~~-~~~~aad~~r~--~eERR~liEEAag~r---~rk~eA 298 (1486)
T PRK04863 226 SGVRKAFQDMEAALRENRMTLEAIRVT-QSDRDLFKHLITES-TNYVAADYMRH--ANERRVHLEEALELR---RELYTS 298 (1486)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHhhhh-hhhhHHHHhhC--HHHHHHHHHHHHHHH---HHHHHH
Confidence 3477 889999998887655433222 13445554322221 22222222222 123333333333333 334444
Q ss_pred hhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcccc---chhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHh
Q 004879 94 LNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLST---LKVECKDLYEKVENLQGLLAKATKQADQAISVL 170 (725)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (725)
.....+++..+..++.+...++..++.||.+...+..-...... +..+-..+.+..+.|+..+.......++ .-
T Consensus 299 ~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLee---le 375 (1486)
T PRK04863 299 RRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEE---AD 375 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 44555666666666777777777777777766665543222221 1122122333334444444333222222 22
Q ss_pred hhhHHHHHHHHHHHHhHhhhhh----HHHhHHHHHhHHHHHHHHHHHHHHH---h---hhchHHHHHHHHHHHHHHHHHH
Q 004879 171 QQNQELRKKVDKLEESLDEANI----YKLSSEKMQQYNELMQQKMKLLEER---L---QRSDEEIHSYVQLYQESVKEFQ 240 (725)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~ 240 (725)
.+-.+++.++.++++.+.+..- +.-....+|+-....++.+..++.- . .-++++..+.++.|...+++..
T Consensus 376 eeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e 455 (1486)
T PRK04863 376 EQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEAT 455 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433211 1111122222223334444444331 1 2245788889999999999888
Q ss_pred HHhhhhHHhhhh
Q 004879 241 DTLHSLKEESKK 252 (725)
Q Consensus 241 ~~~~~~~~~~~~ 252 (725)
..+..++.+...
T Consensus 456 ~qL~elE~kL~~ 467 (1486)
T PRK04863 456 EELLSLEQKLSV 467 (1486)
T ss_pred HHHHHHHHHHHH
Confidence 888887766554
No 164
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=92.58 E-value=4.7 Score=46.39 Aligned_cols=139 Identities=18% Similarity=0.255 Sum_probs=76.5
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHH-HHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhh
Q 004879 66 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVV-MLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKD 144 (725)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (725)
.-.|-+-|..+++||+.|+...--+|++-.-+.+-+..+. +++||-.-+
T Consensus 161 ~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~Kelrdt------------------------------ 210 (596)
T KOG4360|consen 161 LEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDT------------------------------ 210 (596)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH------------------------------
Confidence 3466777888999999998888888877655555544444 444432222
Q ss_pred HHHHHHHHHHHHHHHhhhh----hhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhh
Q 004879 145 LYEKVENLQGLLAKATKQA----DQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQR 220 (725)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (725)
-.++.-+|..|.+-|++. +.--..+.|--|+++|...+- - -++.+.+-+.++-++-+.
T Consensus 211 -N~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~------------~-----Ekeel~~~Lq~~~da~~q 272 (596)
T KOG4360|consen 211 -NTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLR------------H-----EKEELDEHLQAYKDAQRQ 272 (596)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH------------H-----HHHHHHHHHHHHHhhHHH
Confidence 233333333333322221 112223333334444433221 1 123444445555555555
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhHHhhhh
Q 004879 221 SDEEIHSYVQLYQESVKEFQDTLHSLKEESKK 252 (725)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (725)
...|-+-+=++|.+.+..|+.+=+.|+.-.-+
T Consensus 273 l~aE~~EleDkyAE~m~~~~EaeeELk~lrs~ 304 (596)
T KOG4360|consen 273 LTAELEELEDKYAECMQMLHEAEEELKCLRSC 304 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 55666667778999999998877777665554
No 165
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=92.56 E-value=0.28 Score=59.77 Aligned_cols=217 Identities=25% Similarity=0.356 Sum_probs=65.9
Q ss_pred hhhhHHHhHHHHHHHHHHHhhcccCcccchhhhhccCCCccchhcccCcccchhhHhhhhhhhhhccchhHHHHHHHHhh
Q 004879 16 EKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELN 95 (725)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (725)
+--|.+-+|.+|..+++++..-+..-... ....+ ......+..+.++++.+.++-..+.+..+.|+++++
T Consensus 29 ev~r~de~erkL~~le~~I~k~~~~~~~~-----~~~~~-----~~~~~~i~~le~~l~~le~~l~e~~~~~e~L~~~~~ 98 (759)
T PF01496_consen 29 EVRRCDEMERKLRFLEEEIKKLKIPLPEK-----NDKPD-----APKPKEIDELEEELEELEEELRELNENLEKLEEELN 98 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCccccc-----ccccc-----cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777766643331100 00000 111123344445555555444444444555554443
Q ss_pred hhhhhhhHHHHHHhhhhhHHhh-HHHHHhhhhcchhhhhccc---cchhh--hhhH-HHHHHHHHHHHHHHhhh------
Q 004879 96 SVKDADERVVMLEMERSSLESS-LKELESKLSISQEDVAKLS---TLKVE--CKDL-YEKVENLQGLLAKATKQ------ 162 (725)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~-~~~~~~~~~~~~~~~~~------ 162 (725)
+..|....|+++++.+++. ..+++ .+..-..|...+. ..++. +-.. -++.+.++..|.++++.
T Consensus 99 ---~L~E~~~~L~~~~~~l~~~~~~~l~-~~~~l~~~~~~l~~~~~~~~~f~~G~I~~~~~~~f~~~l~r~~~~N~fi~~ 174 (759)
T PF01496_consen 99 ---ELEEEKNVLEEEIEFLEELKLEELE-PWKNLDIDLEELESSKFLNLGFIAGVIPREKIESFERILWRATRGNIFIRF 174 (759)
T ss_dssp ---------------------------------------------------------HHHHHHHHHHHHHHHTT-----S
T ss_pred ---HHHHHHHHHHHHHHHHHhhhhhhhh-hhhhcccchhhhccccceeeeEEEEEEehhhHHHHHHHHHHhccCCeEEEE
Confidence 3345555666666666665 33333 1111222222222 11111 1111 46888899999988876
Q ss_pred -------hh-------hHHHHhhhhHHHHHHHHHHHHhHhhhhhHHH--hHHHHHhHHHHHHHHHHHHHHHhhhchHHHH
Q 004879 163 -------AD-------QAISVLQQNQELRKKVDKLEESLDEANIYKL--SSEKMQQYNELMQQKMKLLEERLQRSDEEIH 226 (725)
Q Consensus 163 -------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (725)
.| ....+.-+..+.++||+++=+++.-..+ .+ ....-++...-++++++.+++.++...+++.
T Consensus 175 ~~Ie~~~~d~~e~~~k~v~vv~~~~~~~~~kv~~il~~~~f~~~-~~p~~~~~p~e~~~~l~~~i~~l~~~~~~~~~~l~ 253 (759)
T PF01496_consen 175 SEIEEILEDPKEEVEKEVFVVFFSGKELEEKVKKILRSFGFERY-DLPEDEGTPEEAIKELEEEIEELEKELEELEEELK 253 (759)
T ss_dssp ------EEEE-EE-SSSEEEEEEEEGGGHHHHHHHHHTTT--B-----GGGGG-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeecccccccceeeeeeEEEEEEchhhHHHHHHHhhccCceec-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1223334445567888887777654332 22 1223345666777889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhH
Q 004879 227 SYVQLYQESVKEFQDTLHSLK 247 (725)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~ 247 (725)
++++.+...+.+-.+.+.+.+
T Consensus 254 ~~~~~~~~~l~~~~~~l~~~~ 274 (759)
T PF01496_consen 254 KLLEKYAEELEAWYEYLRKEK 274 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999888877666666555433
No 166
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=92.53 E-value=6.8 Score=42.78 Aligned_cols=34 Identities=26% Similarity=0.493 Sum_probs=28.3
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhhh
Q 004879 66 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKD 99 (725)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (725)
+..|-+-+..|.+||..|+.....|+++-+.+-+
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~Ee 195 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEE 195 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccH
Confidence 4567788999999999999999999988775543
No 167
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=92.43 E-value=5 Score=44.62 Aligned_cols=28 Identities=4% Similarity=-0.094 Sum_probs=19.2
Q ss_pred HHHHhcCeEEEcCCcccchHHHHHHcCCCcccc
Q 004879 679 PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVN 711 (725)
Q Consensus 679 ~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V~ 711 (725)
.+++.||++|--| .|.. .||..++.||+
T Consensus 277 ~Ll~~a~~vitdS----Sggi-~EA~~lg~Pvv 304 (365)
T TIGR03568 277 SLLKNADAVIGNS----SSGI-IEAPSFGVPTI 304 (365)
T ss_pred HHHHhCCEEEEcC----hhHH-HhhhhcCCCEE
Confidence 7888999988554 1323 78886666654
No 168
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=92.43 E-value=12 Score=42.54 Aligned_cols=166 Identities=17% Similarity=0.224 Sum_probs=96.6
Q ss_pred chhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHH--------HHHHHHH
Q 004879 83 LKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYE--------KVENLQG 154 (725)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 154 (725)
...||+.+..++. +......+|+++...++..+..+|.+++.++.|..+++.---+-..--+ .-.-|-.
T Consensus 43 ~q~ei~~~~~~i~---~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~ 119 (420)
T COG4942 43 IQKEIAALEKKIR---EQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAE 119 (420)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555543 4445566777777777777777777777777777665432211111111 1111222
Q ss_pred HHHHHhh------------------hhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHH
Q 004879 155 LLAKATK------------------QADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEE 216 (725)
Q Consensus 155 ~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (725)
+|+-+-. -+--++..=-=|++++..+|.|++-+..-.--+-.-+++|.-+.-+.-..+.=..
T Consensus 120 ~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~ 199 (420)
T COG4942 120 QLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQA 199 (420)
T ss_pred HHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222211 1111222222367888899999998887766666666665555433333333344
Q ss_pred HhhhchHHHHHHHHHHHHHHHHHHHHhhhhHHhhh
Q 004879 217 RLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESK 251 (725)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (725)
++.....|.+..++.++.++.+=|..|+.|..+..
T Consensus 200 kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~ 234 (420)
T COG4942 200 KLAQLLEERKKTLAQLNSELSADQKKLEELRANES 234 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 57778888888888888887777777777666554
No 169
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=92.41 E-value=2.8 Score=47.13 Aligned_cols=91 Identities=16% Similarity=0.179 Sum_probs=60.4
Q ss_pred HHHHHHHcCCCCCCCCCCEEEE-e-ecCcC-CCCHHHHHHHHHHhhc--CCcEEEEEcCCCcc-c-cc------------
Q 004879 616 KESIRKHLGLSSADARKPLVGC-I-TRLVP-QKGVHLIRHAIYRTLE--LGGQFILLGSSPVP-H-IQ------------ 676 (725)
Q Consensus 616 K~aLRk~lGL~~~d~~~plV~f-V-GRL~~-qKGvdlLieA~~~L~~--~~iqLVIvG~Gp~~-~-le------------ 676 (725)
+...++.+ +++ +.|+|++ . +|-.+ .+-...+++++..+.+ ++++|++....+.. . ++
T Consensus 172 ~~~~~~~~-l~~---~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~ 247 (373)
T PF02684_consen 172 RAEAREKL-LDP---DKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEVHEELIEEILAEYPPDVSI 247 (373)
T ss_pred HHHHHHhc-CCC---CCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHhhCCCCeE
Confidence 34556666 763 5565544 4 45554 4445778899988876 47899887654321 1 11
Q ss_pred ------HHHHHHhcCeEEEcCCcccchHHHHHHc--CCCccccCCCC
Q 004879 677 ------VYPILLSSFSFLRKHIFNICNLYIKLGQ--GGDLTVNNNCE 715 (725)
Q Consensus 677 ------~~~iyAaADIfVlPS~~EpfGLv~LEAM--g~~~~V~~~~~ 715 (725)
...++++||+.++.| |.+-+|++ |.|.+|..-.+
T Consensus 248 ~~~~~~~~~~m~~ad~al~~S-----GTaTLE~Al~g~P~Vv~Yk~~ 289 (373)
T PF02684_consen 248 VIIEGESYDAMAAADAALAAS-----GTATLEAALLGVPMVVAYKVS 289 (373)
T ss_pred EEcCCchHHHHHhCcchhhcC-----CHHHHHHHHhCCCEEEEEcCc
Confidence 118999999999976 89999987 77777765544
No 170
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.38 E-value=4.4 Score=41.69 Aligned_cols=27 Identities=22% Similarity=0.546 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHH
Q 004879 204 NELMQQKMKLLEERLQRSDEEIHSYVQ 230 (725)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (725)
+.++++|+..|.+.+.+-+.+..+.+.
T Consensus 145 n~lLEkKl~~l~~~lE~keaqL~evl~ 171 (201)
T PF13851_consen 145 NLLLEKKLQALSEQLEKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888877777654
No 171
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=92.20 E-value=17 Score=46.90 Aligned_cols=87 Identities=22% Similarity=0.281 Sum_probs=48.3
Q ss_pred HHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHH
Q 004879 103 RVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDK 182 (725)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (725)
....+.++++.+++.+...+++|...+..-..-.....+ .+-..++++-.+-+..++.-.+--....+++|+..|-++
T Consensus 307 ~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~--~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~ 384 (1201)
T PF12128_consen 307 LRDELNKELSALNADLARIKSELDEIEQQKKDYEDADIE--QLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNK 384 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666555554433332222222 334444444444444444444444567778888888888
Q ss_pred HHHhHhhhh
Q 004879 183 LEESLDEAN 191 (725)
Q Consensus 183 ~~~~~~~~~ 191 (725)
+.+.|+..-
T Consensus 385 ~~~~l~~~~ 393 (1201)
T PF12128_consen 385 LKQKLEEAF 393 (1201)
T ss_pred HHHHHHHHH
Confidence 888877654
No 172
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=92.18 E-value=8.5 Score=48.60 Aligned_cols=15 Identities=0% Similarity=0.014 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHCCC
Q 004879 353 DVVAGLGKALQKKGH 367 (725)
Q Consensus 353 ~vV~~LaraL~~~GH 367 (725)
.-+..+-+.+...|.
T Consensus 958 ~~l~~l~~~i~~l~~ 972 (1164)
T TIGR02169 958 AELQRVEEEIRALEP 972 (1164)
T ss_pred HHHHHHHHHHHHcCC
Confidence 334444455555553
No 173
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=91.93 E-value=7 Score=45.81 Aligned_cols=154 Identities=27% Similarity=0.322 Sum_probs=103.2
Q ss_pred hHHHhHHHHHHHHHHHhhcccCcccchhhhhccCCCccchhcccCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhh
Q 004879 19 HVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVK 98 (725)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (725)
+|-.||.|=-+|.+++--.....+.+.. +. ....+..+-.....++....+-..+..+|..|+.++.+.
T Consensus 57 kVR~LEaqN~~L~~di~~lr~~~~~~ts-----~i-----k~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~el- 125 (546)
T KOG0977|consen 57 KVRFLEAQNRKLEHDINLLRGVVGRETS-----GI-----KAKYEAELATARKLLDETARERAKLEIEITKLREELKEL- 125 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCc-----ch-----hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-
Confidence 5667788878888877654333222211 00 012333344455566666667788888888888876654
Q ss_pred hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcc----ccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhH
Q 004879 99 DADERVVMLEMERSSLESSLKELESKLSISQEDVAKL----STLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQ 174 (725)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (725)
..++...+|+|..-+..+++.+..+...++-..-+ ..+..|-+.|-.....|..-|..+.++.|++++. -.
T Consensus 126 --r~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etll---r~ 200 (546)
T KOG0977|consen 126 --RKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLL---RV 200 (546)
T ss_pred --HHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH---HH
Confidence 45667778888888888887777777777665433 3455666677777888888999999999988543 24
Q ss_pred HHHHHHHHHHHhHh
Q 004879 175 ELRKKVDKLEESLD 188 (725)
Q Consensus 175 ~~~~~~~~~~~~~~ 188 (725)
|++.+|+.|.+.|+
T Consensus 201 d~~n~~q~Lleel~ 214 (546)
T KOG0977|consen 201 DLQNRVQTLLEELA 214 (546)
T ss_pred HHHhHHHHHHHHHH
Confidence 67788888777765
No 174
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.77 E-value=17 Score=40.41 Aligned_cols=15 Identities=20% Similarity=0.363 Sum_probs=10.1
Q ss_pred HCCCeEEEEeeCCCC
Q 004879 364 KKGHLVEIVLPKYDC 378 (725)
Q Consensus 364 ~~GHeV~VItP~y~~ 378 (725)
+.|-.|.|-.+.|+.
T Consensus 325 ~~G~~v~v~~~~~~~ 339 (423)
T TIGR01843 325 HVGQPAEIKFSAFPY 339 (423)
T ss_pred CCCCceEEEEecCCC
Confidence 467788877766553
No 175
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=91.71 E-value=7.6 Score=39.64 Aligned_cols=112 Identities=21% Similarity=0.310 Sum_probs=73.7
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHH
Q 004879 68 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYE 147 (725)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (725)
.|-..+..+-+.|.-|.++|+.|+.++......-++-..++.|-..|...++.||..-....+-. .-++-|-..|-.
T Consensus 26 kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~---rqlEkE~q~L~~ 102 (193)
T PF14662_consen 26 KLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQA---RQLEKEQQSLVA 102 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 44566777788888899999999988888888888888889999999999999987654433322 233444445666
Q ss_pred HHHHHHHHHHH-------HhhhhhhHHHHhhhhHHHHHHHHHHHH
Q 004879 148 KVENLQGLLAK-------ATKQADQAISVLQQNQELRKKVDKLEE 185 (725)
Q Consensus 148 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (725)
++++||.--.+ ..++..+ .-..+.+|+.+|-.-|.
T Consensus 103 ~i~~Lqeen~kl~~e~~~lk~~~~e---L~~~~~~Lq~Ql~~~e~ 144 (193)
T PF14662_consen 103 EIETLQEENGKLLAERDGLKKRSKE---LATEKATLQRQLCEFES 144 (193)
T ss_pred HHHHHHHHHhHHHHhhhhHHHHHHH---HHHhhHHHHHHHHHHHH
Confidence 66666654333 2222222 22466677777644443
No 176
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.54 E-value=7 Score=45.69 Aligned_cols=90 Identities=26% Similarity=0.304 Sum_probs=40.3
Q ss_pred cccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhh-------HHHHHhhhhcchhhhhccc
Q 004879 64 SEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESS-------LKELESKLSISQEDVAKLS 136 (725)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 136 (725)
...|+...+++.+++.|..|-+-|+ ++...+.++..|++.++.|..- +..|+++ .|.=--+|.
T Consensus 228 ~~~~~i~~~ie~l~~~n~~l~e~i~-------e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k---~~~~~~~l~ 297 (581)
T KOG0995|consen 228 KYFTSIANEIEDLKKTNRELEEMIN-------EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSK---KQHMEKKLE 297 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhh---hHHHHHHHH
Confidence 3344455555555555554443333 4444555555555555544332 2233322 222233344
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHhhhh
Q 004879 137 TLKVECKDLYEKVENLQGLLAKATKQA 163 (725)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (725)
-++.||..-=+..|.||..-+...+|.
T Consensus 298 ~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 298 MLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443
No 177
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=91.37 E-value=0.058 Score=65.15 Aligned_cols=179 Identities=21% Similarity=0.383 Sum_probs=0.0
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhh-hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhh
Q 004879 66 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVK-DADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKD 144 (725)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (725)
.|.+..++..|.+|+..|......++..++... ...+....+.++.+.|.+.++.|...+....+ .+..++.+|..
T Consensus 195 ~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~---~~~d~~~~~e~ 271 (713)
T PF05622_consen 195 CHELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEE---QRDDLKIELEE 271 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 455666677788888888888888877776544 22223334445555566666655554432111 11112222222
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHhhhhHH----------HHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHH
Q 004879 145 LYEKVENLQGLLAKATKQADQAISVLQQNQE----------LRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLL 214 (725)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (725)
+-..+..|+.-.+..+..|+.|-..=++-.. +...|.+.+.-|++.+-++---+.++.-|..+.++...+
T Consensus 272 le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~L 351 (713)
T PF05622_consen 272 LEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAML 351 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222333332222222223322222222222 222333333344555555555555555555556667777
Q ss_pred HHHhhhchHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 004879 215 EERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKE 248 (725)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (725)
|+.++++.. ..+++..|...|.+.+.-++....
T Consensus 352 Eeel~~~~~-~~~qle~~k~qi~eLe~~l~~~~~ 384 (713)
T PF05622_consen 352 EEELKKARA-LKSQLEEYKKQIQELEQKLSEESR 384 (713)
T ss_dssp ----------------------------------
T ss_pred HHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777877654 567788888887777776665433
No 178
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=91.09 E-value=7.3 Score=43.77 Aligned_cols=94 Identities=14% Similarity=0.087 Sum_probs=62.2
Q ss_pred hHHHHHHHcCCCCCCCCCCEEEEeec-CcC-CCCHHHHHHHHHHhhc--CCcEEEEEcCCCc-ccc--------------
Q 004879 615 NKESIRKHLGLSSADARKPLVGCITR-LVP-QKGVHLIRHAIYRTLE--LGGQFILLGSSPV-PHI-------------- 675 (725)
Q Consensus 615 ~K~aLRk~lGL~~~d~~~plV~fVGR-L~~-qKGvdlLieA~~~L~~--~~iqLVIvG~Gp~-~~l-------------- 675 (725)
+|.++|+.+|++. ..+.+.+..|. -++ ..-...+.+|+..+.+ ++.+|++-=..+. +.+
T Consensus 174 ~r~~ar~~l~~~~--~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~~~~~~~~~~~~~~~~~~~ 251 (381)
T COG0763 174 DREAAREKLGIDA--DEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAKYRRIIEEALKWEVAGLSL 251 (381)
T ss_pred cHHHHHHHhCCCC--CCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHHHHHHHHHHhhccccCceE
Confidence 5677999999984 33445555554 343 4445667788877764 4889988654332 111
Q ss_pred -----cHHHHHHhcCeEEEcCCcccchHHHHHHc--CCCccccCCCC
Q 004879 676 -----QVYPILLSSFSFLRKHIFNICNLYIKLGQ--GGDLTVNNNCE 715 (725)
Q Consensus 676 -----e~~~iyAaADIfVlPS~~EpfGLv~LEAM--g~~~~V~~~~~ 715 (725)
++...|++||+.+..| |.+.+|+| |.|.+|..-.+
T Consensus 252 ~~~~~~~~~a~~~aD~al~aS-----GT~tLE~aL~g~P~Vv~Yk~~ 293 (381)
T COG0763 252 ILIDGEKRKAFAAADAALAAS-----GTATLEAALAGTPMVVAYKVK 293 (381)
T ss_pred EecCchHHHHHHHhhHHHHhc-----cHHHHHHHHhCCCEEEEEecc
Confidence 1127999999988865 99999998 66766655444
No 179
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=91.04 E-value=6.6 Score=46.46 Aligned_cols=149 Identities=19% Similarity=0.275 Sum_probs=85.4
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHH
Q 004879 68 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYE 147 (725)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (725)
.+...++.+++.|..|+..++.+++.-.--.+-.+++..++++...+++.+++++.++...+.. .+.++.++..+-+
T Consensus 314 ~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~---ysel~e~leel~e 390 (569)
T PRK04778 314 TLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIA---YSELQEELEEILK 390 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHH
Confidence 3566677788888888888888887744334446677788888888888888777665554444 4444444444544
Q ss_pred HHHHHHHHHHHHhhhhhhHHH----HhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhh
Q 004879 148 KVENLQGLLAKATKQADQAIS----VLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQR 220 (725)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (725)
+++.+..-.....+.....-. .-++=+.++.++..++..++..++..+...-+ .+..-.+.++..+..+|..
T Consensus 391 ~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~-~~~~~~~~~i~~l~~~L~~ 466 (569)
T PRK04778 391 QLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYL-EMFFEVSDEIEALAEELEE 466 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHH-HHHHHHHHHHHHHHHHhcc
Confidence 444444333332222221100 01122344556666666666666666544422 2333456666666666666
No 180
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=91.01 E-value=24 Score=45.46 Aligned_cols=9 Identities=22% Similarity=0.409 Sum_probs=5.1
Q ss_pred eEEEECCCc
Q 004879 463 DIIHCHDWQ 471 (725)
Q Consensus 463 DIIH~Hdw~ 471 (725)
|++.|++..
T Consensus 615 ~t~Iv~~l~ 623 (1163)
T COG1196 615 DTLVVDDLE 623 (1163)
T ss_pred CeEEecCHH
Confidence 566666543
No 181
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=90.99 E-value=8.2 Score=43.46 Aligned_cols=74 Identities=11% Similarity=-0.060 Sum_probs=45.9
Q ss_pred EEEEeecCcC--CCCHHHHHHHHHHhhc-CCcEEEEE--cCCCcc---------cc------------------------
Q 004879 634 LVGCITRLVP--QKGVHLIRHAIYRTLE-LGGQFILL--GSSPVP---------HI------------------------ 675 (725)
Q Consensus 634 lV~fVGRL~~--qKGvdlLieA~~~L~~-~~iqLVIv--G~Gp~~---------~l------------------------ 675 (725)
++++.|.-.+ .+.+..+++|+..+.+ .+++|++. |..... .+
T Consensus 208 lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~ 287 (396)
T TIGR03492 208 IALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGR 287 (396)
T ss_pred EEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhccCceEEEech
Confidence 4455555533 5567799999988864 36777653 432111 00
Q ss_pred -cHHHHHHhcCeEEEcCCcccchHHHHHHcC--CCccccC
Q 004879 676 -QVYPILLSSFSFLRKHIFNICNLYIKLGQG--GDLTVNN 712 (725)
Q Consensus 676 -e~~~iyAaADIfVlPS~~EpfGLv~LEAMg--~~~~V~~ 712 (725)
.-..+|++||++|+.| |.+..|+++ .|.+++.
T Consensus 288 ~~~~~~l~~ADlvI~rS-----Gt~T~E~a~lg~P~Ilip 322 (396)
T TIGR03492 288 GAFAEILHWADLGIAMA-----GTATEQAVGLGKPVIQLP 322 (396)
T ss_pred HhHHHHHHhCCEEEECc-----CHHHHHHHHhCCCEEEEe
Confidence 0117999999999986 556699884 4544555
No 182
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=90.94 E-value=7 Score=50.34 Aligned_cols=66 Identities=20% Similarity=0.301 Sum_probs=47.9
Q ss_pred cchhhHhhhhhhhhhccc-hhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhh
Q 004879 66 IHSFSKELDSLKTENLSL-KNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQED 131 (725)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (725)
+-....+|+.+.+.-.-- +.||+.+...++...+-...+..++++...|.++..++|+++..-...
T Consensus 322 l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~ 388 (1201)
T PF12128_consen 322 LARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQK 388 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555554443333 347888888888888888899999999999999999999988765443
No 183
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=90.93 E-value=13 Score=45.55 Aligned_cols=127 Identities=22% Similarity=0.361 Sum_probs=67.5
Q ss_pred hhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHH
Q 004879 75 SLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQG 154 (725)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (725)
.+...+.-.++-++.+|.+. -.|..|...|-.+..+.-.++..++.++-+++..+- +|=+.+|.++.
T Consensus 414 e~e~~~l~~e~ry~klkek~----------t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~---~L~d~le~~~~ 480 (980)
T KOG0980|consen 414 EAENKALAAENRYEKLKEKY----------TELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENT---NLNDQLEELQR 480 (980)
T ss_pred hHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHH
Confidence 33444445555566666554 346677788888889999999998888774433332 35566666655
Q ss_pred HHHHHh-hhhhhHHHHhhhhHHH---HHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHH
Q 004879 155 LLAKAT-KQADQAISVLQQNQEL---RKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEE 216 (725)
Q Consensus 155 ~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (725)
..+.+. |.-+++-++-+--++| ..++.+|+..+ .+..+-.....+++-++++||-.++++
T Consensus 481 ~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~--~~~~qs~~~~~~~l~~~l~~KD~~~~~ 544 (980)
T KOG0980|consen 481 AAGRAETKTESQAKALESLRQELALLLIELEELQRTL--SNLAQSHNNQLAQLEDLLKQKDRLAAE 544 (980)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 544421 1111221111112222 22222222221 122233334455677788888888877
No 184
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=90.91 E-value=23 Score=37.14 Aligned_cols=55 Identities=25% Similarity=0.326 Sum_probs=29.5
Q ss_pred hhhhhhhhhccchhHHHHHHHHhhhh----hhhhhHHHHHHhhhhhHHhhHHHHHhhhh
Q 004879 72 ELDSLKTENLSLKNDIKVLKAELNSV----KDADERVVMLEMERSSLESSLKELESKLS 126 (725)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (725)
.+.....|..+|..-|+.+-..|..+ ..+..++..+++.....+..++.||++..
T Consensus 30 ~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~ 88 (237)
T PF00261_consen 30 RAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQ 88 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33444444444555554444444332 34556666666666666666666666543
No 185
>PLN02939 transferase, transferring glycosyl groups
Probab=90.86 E-value=4.7 Score=50.27 Aligned_cols=115 Identities=19% Similarity=0.267 Sum_probs=72.0
Q ss_pred HhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHH
Q 004879 71 KELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVE 150 (725)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (725)
+-+-.|..|...|...+..|..++....+.--.+..|+-|+ +=.++..|+.-|..+-..+.+--.+-..-.+|.+||+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (977)
T PLN02939 257 ERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDC--WWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVD 334 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 33455677888888999999998887777666667777675 4444444544443332222222222233357999999
Q ss_pred HHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhh
Q 004879 151 NLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEAN 191 (725)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (725)
.|++.|..|.----..- --.-+|.||..+|+.|.+.+
T Consensus 335 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 371 (977)
T PLN02939 335 KLEASLKEANVSKFSSY----KVELLQQKLKLLEERLQASD 371 (977)
T ss_pred HHHHHHHHhhHhhhhHH----HHHHHHHHHHHHHHHHHhhH
Confidence 99999987642211111 11346789999998887754
No 186
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=90.71 E-value=54 Score=41.08 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=13.8
Q ss_pred CCCCCCcHHHHHHHHHHHHHH
Q 004879 344 PVAKVGGLGDVVAGLGKALQK 364 (725)
Q Consensus 344 P~~kvGGlg~vV~~LaraL~~ 364 (725)
|+....|-..++..||-+|+-
T Consensus 812 ~~~~LSGGE~~~~sLalrLAL 832 (908)
T COG0419 812 PIKTLSGGERFLASLALRLAL 832 (908)
T ss_pred ccccCCchHHHHHHHHHHHHH
Confidence 554555666777787777654
No 187
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=90.70 E-value=17 Score=46.06 Aligned_cols=125 Identities=25% Similarity=0.359 Sum_probs=75.0
Q ss_pred HHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhH-HHHHHHHHHHHhHhhhhhHHHhH
Q 004879 119 KELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQ-ELRKKVDKLEESLDEANIYKLSS 197 (725)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 197 (725)
+++|.++...|+...+++.....-.+.-++.-..+.-+....+-++.-+..|+..+ .+....-|+++ |++.+....+.
T Consensus 584 ~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e-l~r~~~e~~~~ 662 (1317)
T KOG0612|consen 584 RDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE-LKRENQERISD 662 (1317)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHH
Confidence 36677777777777777776665555555555555555555555555555555443 34445566666 77766666655
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhhchHHHHHH-HHHHHHHHHHHHHHhh
Q 004879 198 EKMQQYNELMQQKMKLLEERLQRSDEEIHSY-VQLYQESVKEFQDTLH 244 (725)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 244 (725)
-..-+.--.+.-+++.++++++..+.|.+-+ |+.=+.-++++..-|.
T Consensus 663 ~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~~L~~~e~~~~e~~~~ls 710 (1317)
T KOG0612|consen 663 SEKEALEIKLERKLKMLQNELEQENAEHHRLRLQDKEAQMKEIESKLS 710 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 4443555566677788888888888888776 1111223555554443
No 188
>PRK09039 hypothetical protein; Validated
Probab=90.60 E-value=7.2 Score=43.30 Aligned_cols=54 Identities=19% Similarity=0.327 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 004879 173 NQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYV 229 (725)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (725)
..+++.+...|++.|.+. ...++++++++ .++++++.+|+..+...+.++.+.=
T Consensus 111 ~~~~~~~~~~l~~~L~~~--k~~~se~~~~V-~~L~~qI~aLr~Qla~le~~L~~ae 164 (343)
T PRK09039 111 GAAAEGRAGELAQELDSE--KQVSARALAQV-ELLNQQIAALRRQLAALEAALDASE 164 (343)
T ss_pred cchHHHHHHHHHHHHHHH--HHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666543 23556665555 4667778888887666655555533
No 189
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=90.58 E-value=8.2 Score=40.80 Aligned_cols=53 Identities=28% Similarity=0.404 Sum_probs=26.2
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhh
Q 004879 70 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDV 132 (725)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (725)
-++|..++.|---+++++..+..+ +..++++-+.+++-++++..|...++...
T Consensus 30 ~~~l~k~~~e~e~~~~~~~~~~~e----------~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 30 RKALKKAKAELEALNKALEALEIE----------LEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555444444444444443 33444555555555555555555555444
No 190
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=90.54 E-value=21 Score=41.86 Aligned_cols=75 Identities=33% Similarity=0.399 Sum_probs=59.2
Q ss_pred HHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhh----HHHHHHHHHHHHhHhhhhhH
Q 004879 119 KELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQN----QELRKKVDKLEESLDEANIY 193 (725)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 193 (725)
++||+--..-..++..|...+.|-..+-..+..+-+--+.|-++++.|...+..| .+|...|..++++|.-...-
T Consensus 116 ~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a 194 (522)
T PF05701_consen 116 AELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLA 194 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566655666678888888888877777777777777788999999999888877 47999999999999876543
No 191
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.39 E-value=38 Score=41.82 Aligned_cols=166 Identities=25% Similarity=0.381 Sum_probs=88.2
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhh-----hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhh
Q 004879 68 SFSKELDSLKTENLSLKNDIKVLKAELNSVK-----DADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVEC 142 (725)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (725)
+|-.|+..++|-|-.|--|++-||++..+-- -..-....||..-..|..+|-.|---.+...-|.-|+.. |-
T Consensus 329 sLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~k---el 405 (1243)
T KOG0971|consen 329 SLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQK---EL 405 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH---HH
Confidence 6777888888888888888888888765431 112233456666666666665554444444444433321 11
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhH-hhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhc
Q 004879 143 KDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESL-DEANIYKLSSEKMQQYNELMQQKMKLLEERLQRS 221 (725)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (725)
...--.++.|...-++...+.|+|-+.+ .||+.+||- +| +|+-+..|-.-++ -|..|+++|||-+...
T Consensus 406 E~k~sE~~eL~r~kE~Lsr~~d~aEs~i---adlkEQVDA---AlGAE~MV~qLtdknl-----nlEekVklLeetv~dl 474 (1243)
T KOG0971|consen 406 EKKNSELEELRRQKERLSRELDQAESTI---ADLKEQVDA---ALGAEEMVEQLTDKNL-----NLEEKVKLLEETVGDL 474 (1243)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH---hhcHHHHHHHHHhhcc-----CHHHHHHHHHHHHHHH
Confidence 1112223333333333333445543333 467778873 33 3555666665433 5677888888755443
Q ss_pred h--HHHHHHHHHHHH-HHHHHHHHhhhhH
Q 004879 222 D--EEIHSYVQLYQE-SVKEFQDTLHSLK 247 (725)
Q Consensus 222 ~--~~~~~~~~~~~~-~~~~~~~~~~~~~ 247 (725)
. +|++.+|...+. ...+...-||.++
T Consensus 475 Ealee~~EQL~Esn~ele~DLreEld~~~ 503 (1243)
T KOG0971|consen 475 EALEEMNEQLQESNRELELDLREELDMAK 503 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 344444443332 3455555555553
No 192
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=90.25 E-value=33 Score=37.86 Aligned_cols=192 Identities=19% Similarity=0.217 Sum_probs=98.8
Q ss_pred ccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhh
Q 004879 65 EIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKD 144 (725)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (725)
.-++|+.-+...|++|..|+.+++.|++++.+...--+-+ ...+++........ .+...+
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlL----------R~~la~~r~~~~~~---~~~~~~------- 125 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLL----------REKLARQRVGDEGI---GARHFP------- 125 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH----------HHHHHhhhhhhccc---cccccc-------
Confidence 4467899999999999999999999999988776554443 33343333222110 011111
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHH---------------------HhH
Q 004879 145 LYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKM---------------------QQY 203 (725)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~ 203 (725)
+.=|.|=..|.+++.|..+- -.|++.-+|..|+...|-++|+--..-+ ---
T Consensus 126 --~ere~lV~qLEk~~~q~~qL------e~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~E 197 (319)
T PF09789_consen 126 --HEREDLVEQLEKLREQIEQL------ERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIME 197 (319)
T ss_pred --hHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 33334444445555554433 2455556666666666655555333222 112
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhh-hHHh-hhhh--ccCCCCCCCChHHHHHHHHHHhhhhh
Q 004879 204 NELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHS-LKEE-SKKR--AVHEPVDDMPWEFWSRLLLIIDGWLL 279 (725)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~--~~~~~~~~~~~~~~~~~ll~~d~~~~ 279 (725)
|-.+++|++.++| |..+. ...+..+..+|+. -+.. .+.. +....+.-|++.--.++|.. ...-.
T Consensus 198 NRyL~erl~q~qe-------E~~l~----k~~i~KYK~~le~k~~~~~~k~~~~~~~~~~~v~s~kQv~~ll~~-~~~~~ 265 (319)
T PF09789_consen 198 NRYLKERLKQLQE-------EKELL----KQTINKYKSALERKRKKGIIKLGNSASSNLTGVMSAKQVKELLES-ESNGC 265 (319)
T ss_pred HHHHHHHHHHHHH-------HHHHH----HHHHHHHHHHHHhhccccccccCCCCCCcccccccHHHHHHHHhc-ccccC
Confidence 2344555555544 43332 2223333444552 1111 1111 11224455777777777752 22211
Q ss_pred cccCChHHHHHHHHHHH
Q 004879 280 EKKLSTSEAKLLREMVW 296 (725)
Q Consensus 280 ~~~~~~~~~~~~~~~~~ 296 (725)
+--.++..+++|+.++-
T Consensus 266 ~~~~~~~s~sdLksl~~ 282 (319)
T PF09789_consen 266 SLPASPQSISDLKSLAT 282 (319)
T ss_pred CCCCCcchHHHHHHHHH
Confidence 23466777888888663
No 193
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=90.17 E-value=17 Score=39.31 Aligned_cols=28 Identities=36% Similarity=0.428 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 004879 208 QQKMKLLEERLQRSDEEIHSYVQLYQES 235 (725)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (725)
+..+..+|..+.....++..+++.|+.+
T Consensus 261 ~~~i~~le~el~~l~~~~~~~~~ey~~L 288 (312)
T PF00038_consen 261 QAEIAELEEELAELREEMARQLREYQEL 288 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhccchhHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555554
No 194
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=90.13 E-value=23 Score=44.40 Aligned_cols=64 Identities=30% Similarity=0.462 Sum_probs=36.5
Q ss_pred chhHHHHHHHHhhhhhhhhhHHHHHH----------hhh-hhHHhhHHHHHhhhhcchhhhhccccchhhhhhHH
Q 004879 83 LKNDIKVLKAELNSVKDADERVVMLE----------MER-SSLESSLKELESKLSISQEDVAKLSTLKVECKDLY 146 (725)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (725)
+++.++.++..+.+..+..+++..+. .+. ...+..+++++..+...+.....|....-+-..+-
T Consensus 230 l~~e~e~l~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~ 304 (908)
T COG0419 230 LEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELE 304 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777766666665522 222 23444566666666666666666655555433333
No 195
>PRK01156 chromosome segregation protein; Provisional
Probab=89.97 E-value=28 Score=43.33 Aligned_cols=60 Identities=25% Similarity=0.194 Sum_probs=31.6
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 004879 68 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSI 127 (725)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (725)
.+..++..++.+--.++..++.++.++.......+.+..++++...+++.+++++.++..
T Consensus 215 ~l~~~i~~~~~el~~~~~~l~~l~~~l~~l~~~~~~~~~~e~~i~ele~~l~el~~~~~e 274 (895)
T PRK01156 215 ITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNY 274 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555444555555555555555555555554333
No 196
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=89.88 E-value=27 Score=41.16 Aligned_cols=125 Identities=25% Similarity=0.368 Sum_probs=70.1
Q ss_pred hhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHH
Q 004879 72 ELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVEN 151 (725)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (725)
-.-.|..||..|-.||.-|+.... .++..--.+.|.|-+.+...|.+-.+..+ .++.|-+.+|+.++.
T Consensus 57 kVR~LEaqN~~L~~di~~lr~~~~--~~ts~ik~~ye~El~~ar~~l~e~~~~ra----------~~e~ei~kl~~e~~e 124 (546)
T KOG0977|consen 57 KVRFLEAQNRKLEHDINLLRGVVG--RETSGIKAKYEAELATARKLLDETARERA----------KLEIEITKLREELKE 124 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc--CCCcchhHHhhhhHHHHHHHHHHHHHHHH----------HHHHHHHHhHHHHHH
Confidence 334456666666666666665432 23333334445555555555544444333 344455567788888
Q ss_pred HHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHH
Q 004879 152 LQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSY 228 (725)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (725)
|...++++++.+..+ +.++|..+.-|.+ .+.-..+++-+++.||+.+.....|+--+
T Consensus 125 lr~~~~~~~k~~~~~----------re~~~~~~~~l~~----------leAe~~~~krr~~~le~e~~~Lk~en~rl 181 (546)
T KOG0977|consen 125 LRKKLEKAEKERRGA----------REKLDDYLSRLSE----------LEAEINTLKRRIKALEDELKRLKAENSRL 181 (546)
T ss_pred HHHHHHHHHHHHhhh----------HHHHHHHhhhhhh----------hhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 888777777666555 3344433332221 12223467788888888887777776543
No 197
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=89.72 E-value=12 Score=43.63 Aligned_cols=75 Identities=21% Similarity=0.314 Sum_probs=37.5
Q ss_pred hhcccCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHH--------HHHHhhhhhHHhhHHHHHhhhhcch
Q 004879 58 DLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERV--------VMLEMERSSLESSLKELESKLSISQ 129 (725)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (725)
..+...+. +++..|+..+|-+...++..+..++.++.+...-..+. .+....-..|+..|.+++..+..-+
T Consensus 97 ~~~~~~~~-~sl~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~ 175 (511)
T PF09787_consen 97 EASSAKSS-DSLSSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKRED 175 (511)
T ss_pred cccccccc-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 33344444 66677777765555555555555555544441111111 1112222556777777777666555
Q ss_pred hhhh
Q 004879 130 EDVA 133 (725)
Q Consensus 130 ~~~~ 133 (725)
.++-
T Consensus 176 ~~~~ 179 (511)
T PF09787_consen 176 GNAI 179 (511)
T ss_pred ccHH
Confidence 5543
No 198
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=89.63 E-value=33 Score=36.98 Aligned_cols=69 Identities=23% Similarity=0.387 Sum_probs=30.9
Q ss_pred hHHHhHHHHHHHHHHHhhcccCcccchhhhhccCCCccchhcccCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhh
Q 004879 19 HVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSV 97 (725)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (725)
+|.-||.+=.+|..++..-...-+.... .........+..+-..++.+..|+..|.-++..++.++.++
T Consensus 19 kVr~LE~~N~~Le~~i~~~~~~~~~~~~----------~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~ 87 (312)
T PF00038_consen 19 KVRFLEQENKRLESEIEELREKKGEEVS----------RIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDL 87 (312)
T ss_dssp HHHHHHHHHHHHHHHHHH---------H----------HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHhcccccCc----------ccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHH
Confidence 5667777777777777654333111100 00111223344445555555555555555555444444443
No 199
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=89.28 E-value=6.6 Score=47.17 Aligned_cols=27 Identities=30% Similarity=0.313 Sum_probs=15.7
Q ss_pred hHHHHHHhhhhhHHhhHHHHHhhhhcc
Q 004879 102 ERVVMLEMERSSLESSLKELESKLSIS 128 (725)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (725)
.++..+-++.+.++..+.+++.++..+
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~ 417 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTI 417 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445555555556666666666666554
No 200
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=89.28 E-value=22 Score=38.08 Aligned_cols=71 Identities=28% Similarity=0.345 Sum_probs=52.9
Q ss_pred cchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhH---HHHHHHHHHHHHH
Q 004879 82 SLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDL---YEKVENLQGLLAK 158 (725)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 158 (725)
+-+..++.+|++|.+.++. .+++-+.|+..+.+|++++..+|++++-|+|-+. +.. -=++.+|...|+.
T Consensus 60 ~~~~~l~~ak~eLqe~eek------~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD--~EYPvK~vqIa~L~rqlq~ 131 (258)
T PF15397_consen 60 SNHKQLQQAKAELQEWEEK------EESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKD--HEYPVKAVQIANLVRQLQQ 131 (258)
T ss_pred cChHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHH
Confidence 3456778888888777654 4577889999999999999999999999999876 222 1245666666655
Q ss_pred Hh
Q 004879 159 AT 160 (725)
Q Consensus 159 ~~ 160 (725)
++
T Consensus 132 lk 133 (258)
T PF15397_consen 132 LK 133 (258)
T ss_pred HH
Confidence 43
No 201
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=89.25 E-value=42 Score=38.00 Aligned_cols=19 Identities=16% Similarity=0.263 Sum_probs=16.0
Q ss_pred hHHHhHHHHHHHHHHHhhc
Q 004879 19 HVELLEDQLQKLQHELTHR 37 (725)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~ 37 (725)
-.+.+++|++.++++|...
T Consensus 172 ~~~fl~~ql~~~~~~l~~a 190 (444)
T TIGR03017 172 AALWFVQQIAALREDLARA 190 (444)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3678999999999998875
No 202
>PRK11519 tyrosine kinase; Provisional
Probab=89.17 E-value=28 Score=42.46 Aligned_cols=38 Identities=16% Similarity=0.103 Sum_probs=30.0
Q ss_pred CCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Q 004879 332 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVL 373 (725)
Q Consensus 332 ~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VIt 373 (725)
+-|++.|++.. +.-|-..++..||.+++..|+.|-+|=
T Consensus 525 ~~kvi~vts~~----~geGKTt~a~nLA~~la~~g~rvLlID 562 (719)
T PRK11519 525 QNNVLMMTGVS----PSIGKTFVCANLAAVISQTNKRVLLID 562 (719)
T ss_pred CceEEEEECCC----CCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 34888888742 234777889999999999999999993
No 203
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=89.09 E-value=1.8 Score=47.84 Aligned_cols=37 Identities=24% Similarity=0.392 Sum_probs=28.1
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
|||++++.- . .|=+ .=...|+++|+++||+|+++++.
T Consensus 1 mrIl~~~~p---~--~GHv-~P~l~la~~L~~rGh~V~~~t~~ 37 (401)
T cd03784 1 MRVLITTIG---S--RGDV-QPLVALAWALRAAGHEVRVATPP 37 (401)
T ss_pred CeEEEEeCC---C--cchH-HHHHHHHHHHHHCCCeEEEeeCH
Confidence 899999752 1 2333 34458999999999999999876
No 204
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=88.78 E-value=7.9 Score=40.94 Aligned_cols=26 Identities=19% Similarity=0.454 Sum_probs=13.8
Q ss_pred hhHhhhhhhhhhccchhHHHHHHHHh
Q 004879 69 FSKELDSLKTENLSLKNDIKVLKAEL 94 (725)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (725)
+-.++..++.+-..+..||+.+..++
T Consensus 50 ~~~e~e~le~qv~~~e~ei~~~r~r~ 75 (239)
T COG1579 50 LEIELEDLENQVSQLESEIQEIRERI 75 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555554443
No 205
>PRK01156 chromosome segregation protein; Provisional
Probab=88.78 E-value=42 Score=41.78 Aligned_cols=71 Identities=24% Similarity=0.170 Sum_probs=38.5
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccc
Q 004879 68 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTL 138 (725)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (725)
.+..++..++.+--.++..++.++.++......-+.+..++.+...+++.++++|+++........++..+
T Consensus 208 el~~~~~~l~~~i~~~~~el~~~~~~l~~l~~~l~~l~~~~~~~~~~e~~i~ele~~l~el~~~~~el~~~ 278 (895)
T PRK01156 208 DDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKEL 278 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555544555555555555555544444444455666666677777777766555544444433
No 206
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=88.69 E-value=32 Score=43.25 Aligned_cols=61 Identities=20% Similarity=0.257 Sum_probs=40.2
Q ss_pred HHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhH
Q 004879 106 MLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQA 166 (725)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (725)
.+++.--.++..+.+|+..-...|.|++++..+..|-++.-++++...+.+.++.+..+++
T Consensus 707 q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~ 767 (1074)
T KOG0250|consen 707 QIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHI 767 (1074)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334445555555552256677888888888887777777777777777777766665
No 207
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.64 E-value=14 Score=38.01 Aligned_cols=58 Identities=29% Similarity=0.349 Sum_probs=40.1
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhH-----HHHHHHHHHHHhHhhhhh
Q 004879 135 LSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQ-----ELRKKVDKLEESLDEANI 192 (725)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 192 (725)
+..|+.|+..|-.+++.++.--+....+-+.++.-.||.- =|++|+..|.+.|+..++
T Consensus 102 l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~kea 164 (201)
T PF13851_consen 102 LKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEA 164 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666667777777777777777777777877777644 456788888777775443
No 208
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=88.23 E-value=2.3 Score=43.77 Aligned_cols=82 Identities=30% Similarity=0.343 Sum_probs=50.5
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHH----HHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhH
Q 004879 70 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERV----VMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDL 145 (725)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (725)
-.||..|+.||-.|||||+.+|+.|.+--.+.-.= .-|||=|--=+++-.+|--+ +++ ..+
T Consensus 115 ~sEF~~lr~e~EklkndlEk~ks~lr~ei~~~~a~~rLdLNLEkgr~~d~~~~~~l~~~---------e~s------~kI 179 (220)
T KOG3156|consen 115 RSEFANLRAENEKLKNDLEKLKSSLRHEISKTTAEFRLDLNLEKGRIKDESSSHDLQIK---------EIS------TKI 179 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhceeecchhhccccchhhhcchhHh---------HHH------HHH
Confidence 56899999999999999999999997654332211 12344332222222222222 111 123
Q ss_pred HHHHHHHHHHHHHHhhhhhhH
Q 004879 146 YEKVENLQGLLAKATKQADQA 166 (725)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~ 166 (725)
=..|.||..+++.+.-|.-|.
T Consensus 180 d~Ev~~lk~qi~s~K~qt~qw 200 (220)
T KOG3156|consen 180 DQEVTNLKTQIESVKTQTIQW 200 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888877776654
No 209
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.09 E-value=29 Score=43.53 Aligned_cols=179 Identities=22% Similarity=0.275 Sum_probs=94.3
Q ss_pred CcccchhhHhhhhhhhhhccchhHHHHHHHHhhhh----hhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcc---
Q 004879 63 NSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSV----KDADERVVMLEMERSSLESSLKELESKLSISQEDVAKL--- 135 (725)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 135 (725)
.+.+|.|-+.+..++.+-.++|.++...+.++..+ .+...++..++++-...+..+++|+.+....+..|-+=
T Consensus 682 ~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~ 761 (1141)
T KOG0018|consen 682 ESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCR 761 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35678888888888777777777777766666433 34445555666666666777777776666655544321
Q ss_pred ----ccchhhhhhHH----HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhh---------------
Q 004879 136 ----STLKVECKDLY----EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANI--------------- 192 (725)
Q Consensus 136 ----~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 192 (725)
.-..||-..+. .|--.++...+++.+|.| +..| +|.+++|.+++.+++..+-
T Consensus 762 ~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~----fe~~-~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~ 836 (1141)
T KOG0018|consen 762 RIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLD----FEKQ-KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKI 836 (1141)
T ss_pred hcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----heec-ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Confidence 11122221221 122223333333333322 2233 6666666655555443211
Q ss_pred -----------HHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhhhH
Q 004879 193 -----------YKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLK 247 (725)
Q Consensus 193 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (725)
-+.|-.++-.+++-.++=-.++.+ +.+++.++.++=..++....|-|+.|.+-+
T Consensus 837 i~e~~~~e~k~k~~~~~~~~e~~e~~k~~~~~~~~-~tkl~~~i~~~es~ie~~~~er~~lL~~ck 901 (1141)
T KOG0018|consen 837 IAEIEELEKKNKSKFEKKEDEINEVKKILRRLVKE-LTKLDKEITSIESKIERKESERHNLLSKCK 901 (1141)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 112222222333333333334444 777777777776677777777777777633
No 210
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=88.06 E-value=0.15 Score=61.61 Aligned_cols=22 Identities=27% Similarity=0.296 Sum_probs=0.0
Q ss_pred hhhHhhhhhhhhhccchhHHHH
Q 004879 68 SFSKELDSLKTENLSLKNDIKV 89 (725)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~ 89 (725)
.+.+.+..|..||-.||..++.
T Consensus 456 ~l~erl~rLe~ENk~Lk~~~e~ 477 (713)
T PF05622_consen 456 ELRERLLRLEHENKRLKEKQEE 477 (713)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3455666778888888755443
No 211
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=87.82 E-value=33 Score=41.13 Aligned_cols=93 Identities=20% Similarity=0.284 Sum_probs=60.7
Q ss_pred CCccchhcccCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhh
Q 004879 53 EPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDV 132 (725)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (725)
.|--+|....++ .-.||+.++++ |.+|...|. .-+-++..+|++.+.|+.....++-+--.-.+.-
T Consensus 332 s~s~~n~~~~d~----~q~eLdK~~~~-------i~~Ln~~le---aReaqll~~e~~ka~lee~~~n~~~e~~~~k~~~ 397 (961)
T KOG4673|consen 332 SSSATNVSDSDD----VQLELDKTKKE-------IKMLNNALE---AREAQLLADEIAKAMLEEEQLNSVTEDLKRKSNE 397 (961)
T ss_pred CCCCccccCchh----HHHHHHHHHHH-------HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhc
Confidence 344344444443 34577777766 777766665 3456788889999988887666666656666777
Q ss_pred hccccchhhhhhHHHHHHHHHHHHHHHhhh
Q 004879 133 AKLSTLKVECKDLYEKVENLQGLLAKATKQ 162 (725)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (725)
+..++|+.| .-.+|.+|..-..-+++.
T Consensus 398 s~~ssl~~e---~~QRva~lEkKvqa~~kE 424 (961)
T KOG4673|consen 398 SEVSSLREE---YHQRVATLEKKVQALTKE 424 (961)
T ss_pred ccccchHHH---HHHHHHHHHHHHHHHHHh
Confidence 889999987 455666665544444443
No 212
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=87.81 E-value=18 Score=45.81 Aligned_cols=92 Identities=24% Similarity=0.350 Sum_probs=54.9
Q ss_pred hhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcc-------ccchhhh----hhHHHHHHHHHHHHHHHhhhh
Q 004879 95 NSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKL-------STLKVEC----KDLYEKVENLQGLLAKATKQA 163 (725)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 163 (725)
.+.++.++++...+.++..|+..+++++..+..+|.-...+ ..++.+- -+.-.+.++.+.|....++-.
T Consensus 494 ~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~ 573 (1317)
T KOG0612|consen 494 HEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELS 573 (1317)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhh
Confidence 45667778888888888889999999888888776543322 1111110 011222333333333444444
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHh
Q 004879 164 DQAISVLQQNQELRKKVDKLEES 186 (725)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~ 186 (725)
.+--..+.++.+++++...|+++
T Consensus 574 ~~iq~~~e~~~~~~d~l~~le~~ 596 (1317)
T KOG0612|consen 574 KQIQQELEENRDLEDKLSLLEES 596 (1317)
T ss_pred HHHHHHhhccccHHHHHHHHHHH
Confidence 44445666778888888888776
No 213
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=87.73 E-value=40 Score=35.52 Aligned_cols=126 Identities=19% Similarity=0.320 Sum_probs=73.4
Q ss_pred chhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhh
Q 004879 83 LKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQ 162 (725)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (725)
+++.|..|...|. +++..|+-...+=.+.++..+..|..++..--.+ +...++.-+..|-+++..|+..+..-..+
T Consensus 39 i~e~i~~Le~~l~--~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~--~~~~~~~~l~~L~~ri~~L~~~i~ee~~~ 114 (247)
T PF06705_consen 39 IKEQIQKLEKALE--AEVKRRVESNKKLQSKFEEQINNMQERVENQISE--KQEQLQSRLDSLNDRIEALEEEIQEEKEE 114 (247)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555554443 3455555555555566777777776555433222 44555566667777777777777765555
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHH
Q 004879 163 ADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEE 216 (725)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (725)
-.+.+ -..++.|.++|..|.+.++.-.....-++.. |...+..=...+.+
T Consensus 115 r~~~i--e~~~~~l~~~l~~l~~~~~~Er~~R~erE~~--i~krl~e~~~~l~~ 164 (247)
T PF06705_consen 115 RPQDI--EELNQELVRELNELQEAFENERNEREEREEN--ILKRLEEEENRLQE 164 (247)
T ss_pred hhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 44443 3456778888888888887665555444432 44444443344444
No 214
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=87.30 E-value=20 Score=43.54 Aligned_cols=99 Identities=34% Similarity=0.440 Sum_probs=49.4
Q ss_pred hHhhhhhhhhhccchhHHHHHHH----HhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhH
Q 004879 70 SKELDSLKTENLSLKNDIKVLKA----ELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDL 145 (725)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (725)
.++...+..|...||++|..+|. .|.+..+-+|--..|.|.-|.|.++--|.| .+|.|-+.+
T Consensus 68 ~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE--------------~~Khei~rl 133 (717)
T PF09730_consen 68 RKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFE--------------GLKHEIKRL 133 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHH--------------HHHHHHHHH
Confidence 44444455555555555555543 244444444544555555555555444444 345555555
Q ss_pred HHHHHHHHHHHHHH-------hhhhhhHHHHhhhh----HHHHHHHHH
Q 004879 146 YEKVENLQGLLAKA-------TKQADQAISVLQQN----QELRKKVDK 182 (725)
Q Consensus 146 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~----~~~~~~~~~ 182 (725)
-|..+-|...|+-| -+|.+.|...|++- ..||+.+|.
T Consensus 134 ~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~ 181 (717)
T PF09730_consen 134 EEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELDQ 181 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555444433 34666666666543 335555554
No 215
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=87.30 E-value=6.4 Score=39.99 Aligned_cols=64 Identities=28% Similarity=0.436 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q 004879 171 QQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVK 237 (725)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (725)
.....|+.++..|++.|++-+- ..+.++.-..-++-....+|+++++...|+..+|++.-..+.
T Consensus 123 ~~~~~L~~~~~~l~~~l~ek~k---~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~ 186 (194)
T PF08614_consen 123 AELAQLEEKIKDLEEELKEKNK---ANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKA 186 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678888888887776431 223344445567778899999999999999999998877643
No 216
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=87.11 E-value=48 Score=38.54 Aligned_cols=25 Identities=8% Similarity=0.175 Sum_probs=13.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhhch
Q 004879 198 EKMQQYNELMQQKMKLLEERLQRSD 222 (725)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (725)
+.+.+++.=++++++.++.+++.+.
T Consensus 136 ~~l~~ll~Pl~e~l~~f~~~v~~~~ 160 (475)
T PRK10361 136 QSLNSLLSPLREQLDGFRRQVQDSF 160 (475)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3334444555566666666665544
No 217
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.03 E-value=25 Score=42.58 Aligned_cols=51 Identities=27% Similarity=0.272 Sum_probs=31.3
Q ss_pred hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhh----ccccchhhhhhHHHHHHHHH
Q 004879 99 DADERVVMLEMERSSLESSLKELESKLSISQEDVA----KLSTLKVECKDLYEKVENLQ 153 (725)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 153 (725)
+..|+-+.+|-||+. .++|-.+--.-|+++. +...|++|-++|-+|...|.
T Consensus 403 ~ElEkqRqlewErar----~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls 457 (1118)
T KOG1029|consen 403 EELEKQRQLEWERAR----RQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLS 457 (1118)
T ss_pred HHHHHHHHHHHHHHH----HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555666666654 4455555555667664 45667788778877766553
No 218
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.89 E-value=9.4 Score=43.43 Aligned_cols=100 Identities=20% Similarity=0.244 Sum_probs=55.1
Q ss_pred hccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHH
Q 004879 133 AKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMK 212 (725)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (725)
++|...+.....+-.++.+|+..+..+......+..-+ +.++.|+++++.-|.+-. --..+++.-....+++++
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~---~q~q~k~~k~~kel~~~~---E~n~~l~knq~vw~~kl~ 420 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKL---QQLQTKLKKCQKELKEER---EENKKLIKNQDVWRGKLK 420 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHH
Confidence 34444444444444555555444443333222222233 456667777666554432 223344444578899999
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHHHH
Q 004879 213 LLEERLQRSDEEIHSYVQLYQESVKE 238 (725)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (725)
.+||+.++........++..|+-+..
T Consensus 421 ~~~e~~~~~~~s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 421 ELEEREKEALGSKDEKITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998887776666666555555443
No 219
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=86.29 E-value=19 Score=37.03 Aligned_cols=110 Identities=21% Similarity=0.333 Sum_probs=72.0
Q ss_pred hhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhH---------HHHhhhhHHHHHHHH
Q 004879 111 RSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQA---------ISVLQQNQELRKKVD 181 (725)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 181 (725)
...|+..|+|||..+..+...+...-..+.. +-.+++.++....+-.++|..| ...|.+-.+++.++.
T Consensus 25 ~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~---le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~ 101 (221)
T PF04012_consen 25 EKMLEQAIRDMEEQLRKARQALARVMANQKR---LERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAE 101 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 3678888999999998888888877766553 4455555555555555555555 344444455555555
Q ss_pred HHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q 004879 182 KLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQ 233 (725)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (725)
.++..+. .+.....-++..+..++.+++....+...+.-...
T Consensus 102 ~l~~~~~----------~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~ 143 (221)
T PF04012_consen 102 RLEQQLD----------QAEAQVEKLKEQLEELEAKLEELKSKREELKAREN 143 (221)
T ss_pred HHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555443 33345566777788888888888877777665554
No 220
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=86.26 E-value=38 Score=35.55 Aligned_cols=82 Identities=21% Similarity=0.280 Sum_probs=40.8
Q ss_pred hhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHH
Q 004879 101 DERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKV 180 (725)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (725)
+.....||.--...+..+.+||.++..+..-.......-. ..-.|+..++.-|++|..+++.+- +...+|...+
T Consensus 77 er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~---E~~rkl~~~E~~Le~aEeR~e~~E---~ki~eLE~el 150 (237)
T PF00261_consen 77 ERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYE---EVERKLKVLEQELERAEERAEAAE---SKIKELEEEL 150 (237)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhc---hhHHHHHHHH
Confidence 3444455555455556666666666555443332221111 234555666666777666666552 2334444444
Q ss_pred HHHHHhHh
Q 004879 181 DKLEESLD 188 (725)
Q Consensus 181 ~~~~~~~~ 188 (725)
..+..+|.
T Consensus 151 ~~~~~~lk 158 (237)
T PF00261_consen 151 KSVGNNLK 158 (237)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 221
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=85.90 E-value=37 Score=42.73 Aligned_cols=59 Identities=24% Similarity=0.285 Sum_probs=28.5
Q ss_pred hhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcccc----chhhhhhHHHHHHHHHHHHHH
Q 004879 100 ADERVVMLEMERSSLESSLKELESKLSISQEDVAKLST----LKVECKDLYEKVENLQGLLAK 158 (725)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 158 (725)
.+++....|+|+......+++||-++......+..+.. ....|..|.++.+.++.-|..
T Consensus 432 see~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~ 494 (1041)
T KOG0243|consen 432 SEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQN 494 (1041)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666666655444433333322221 122344455555555555544
No 222
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=85.77 E-value=90 Score=41.09 Aligned_cols=42 Identities=7% Similarity=0.083 Sum_probs=19.2
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcc
Q 004879 87 IKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSIS 128 (725)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (725)
...+.+.-..+....+.+.....+.......+++.+..+..+
T Consensus 792 ~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~l~~a 833 (1353)
T TIGR02680 792 HRRAAEAERQAESAERELARAARKAAAAAAAWKQARRELERD 833 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444433
No 223
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=85.70 E-value=11 Score=46.42 Aligned_cols=102 Identities=28% Similarity=0.318 Sum_probs=47.1
Q ss_pred ccCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhh--hhhhHHHHHHhh---------hhhHHhhHHHHHhhhhcch
Q 004879 61 LNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVK--DADERVVMLEME---------RSSLESSLKELESKLSISQ 129 (725)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 129 (725)
+-++.|..++.+++.+.+|-+- |+..|+.+..-- +-..|+-.|+-| |+.|+..=.+|++-...-+
T Consensus 789 kLn~eI~~l~~kl~~~~~er~~----~~~rk~~le~~l~~kL~~r~~~l~~ei~~~~d~~~~~el~~~~~el~~~~~~~e 864 (1200)
T KOG0964|consen 789 KLNKEINKLSVKLRALREERID----IETRKTALEANLNTKLYKRVNELEQEIGDLNDSSRRSELELEKSELESEEKRVE 864 (1200)
T ss_pred HhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccccchhhhhHHHHHHHHHHHHHH
Confidence 3456677777777777776654 333333332211 111222222222 2223333334444444444
Q ss_pred hhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhH
Q 004879 130 EDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQA 166 (725)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (725)
+-+++|++|+..-...-...-+++..|+++.+....-
T Consensus 865 ~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~lek~~ 901 (1200)
T KOG0964|consen 865 AAILELKTLQDSIDKKKAEIKEIKKELEKAKNLEKEK 901 (1200)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555544444444445555555555544443
No 224
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=85.62 E-value=87 Score=39.93 Aligned_cols=30 Identities=33% Similarity=0.448 Sum_probs=17.0
Q ss_pred hhHHhhhhhhhHHHh--HHHHHHHHHHHhhcc
Q 004879 9 RIRVAAQEKIHVELL--EDQLQKLQHELTHRG 38 (725)
Q Consensus 9 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 38 (725)
.|+--+++-...+|. -+|++.|..++..+-
T Consensus 1493 si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v 1524 (1758)
T KOG0994|consen 1493 SIEEVAEEVLALELPLTPEQIQQLTGEIQERV 1524 (1758)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 344455555544443 467777777766553
No 225
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=85.49 E-value=34 Score=38.52 Aligned_cols=16 Identities=50% Similarity=0.644 Sum_probs=10.1
Q ss_pred hhHHhhHHHHHhhhhc
Q 004879 112 SSLESSLKELESKLSI 127 (725)
Q Consensus 112 ~~~~~~~~~~~~~~~~ 127 (725)
+.||+.|..||+.+-.
T Consensus 212 a~LE~RL~~LE~~lG~ 227 (388)
T PF04912_consen 212 ADLEKRLARLESALGI 227 (388)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 3466666666666666
No 226
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=85.49 E-value=36 Score=39.04 Aligned_cols=28 Identities=21% Similarity=0.119 Sum_probs=17.2
Q ss_pred hhHhhhhhhhhhccchhHHHHHHHHhhh
Q 004879 69 FSKELDSLKTENLSLKNDIKVLKAELNS 96 (725)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (725)
+..+++.++..-..++..+..|++++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~rL~a~~~~ 122 (457)
T TIGR01000 95 EENQKQLLEQQLDNLKDQKKSLDTLKQS 122 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666543
No 227
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=85.35 E-value=44 Score=40.34 Aligned_cols=152 Identities=19% Similarity=0.275 Sum_probs=90.1
Q ss_pred hhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHH
Q 004879 73 LDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENL 152 (725)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (725)
..+|-+=|.-|.+++.++...=..-.+.+|++.+|+.+-..+.++|.+.-.++.-.-+---.|+ -+++ |-|
T Consensus 134 ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rls-dtvd--------Erl 204 (916)
T KOG0249|consen 134 AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLS-DTVD--------ERL 204 (916)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc-cccH--------HHH
Confidence 4556666778889998888877788899999999998888888888776555543332222221 1121 222
Q ss_pred HHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 004879 153 QGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLY 232 (725)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (725)
|.-+.+ --+ .|+.-..|-..++.++.-|++.+ .-.+++++..+-+.|.+++|+++...-..+++..+..|
T Consensus 205 qlhlke----rma---Ale~kn~L~~e~~s~kk~l~~~~---~~k~rl~~d~E~Lr~e~~qL~~~~~~~~~~mrd~~~~~ 274 (916)
T KOG0249|consen 205 QLHLKE----RMA---ALEDKNRLEQELESVKKQLEEMR---HDKDKLRTDIEDLRGELDQLRRSSLEKEQELRDHLRTY 274 (916)
T ss_pred HHHHHH----HHH---HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhcchhhhh
Confidence 222211 111 13333334444444444444433 23455666666777777777766666666777778888
Q ss_pred HHHHHHHHHHh
Q 004879 233 QESVKEFQDTL 243 (725)
Q Consensus 233 ~~~~~~~~~~~ 243 (725)
++.+-+-+.++
T Consensus 275 ~e~~~~~~~~~ 285 (916)
T KOG0249|consen 275 AERRRETETTN 285 (916)
T ss_pred HHHHHhhcchh
Confidence 77766665553
No 228
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=85.13 E-value=0.27 Score=59.56 Aligned_cols=161 Identities=25% Similarity=0.360 Sum_probs=0.0
Q ss_pred chhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhc------chhh-hhccccchhhhhhHHHHHHHHHHH
Q 004879 83 LKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSI------SQED-VAKLSTLKVECKDLYEKVENLQGL 155 (725)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 155 (725)
||+....|+.+|.......+.+..++-|+..|+..++..++-+.. +.+| +..+..++.++-.+-++..+++.-
T Consensus 286 LeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~ 365 (722)
T PF05557_consen 286 LEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSE 365 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 333444444444444444445555555555555555554442222 2333 346788888888888888887776
Q ss_pred HHHHhhhhhhHHHHhh-hhHHHHHHHHHHHHhHhhhhhHHHhHHHHHh----HHHHHHHHHHHHHHHhhhchHH------
Q 004879 156 LAKATKQADQAISVLQ-QNQELRKKVDKLEESLDEANIYKLSSEKMQQ----YNELMQQKMKLLEERLQRSDEE------ 224 (725)
Q Consensus 156 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~------ 224 (725)
+....+.. .-|+ ....+..++.+++.++....--.-..+.+.. -.+.+++.|+.++......+..
T Consensus 366 ~~~l~~~~----~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~ 441 (722)
T PF05557_consen 366 LRELEEEI----QELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQDTQR 441 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhHHHH
Confidence 65533322 2222 2234556666666655443211111121111 1244555566655444333322
Q ss_pred ---HHHHHHHHHHHHHHHHHHhhhhH
Q 004879 225 ---IHSYVQLYQESVKEFQDTLHSLK 247 (725)
Q Consensus 225 ---~~~~~~~~~~~~~~~~~~~~~~~ 247 (725)
+..+++.|+....+....|+.+.
T Consensus 442 ~~~~~~l~~~~~~~~~ele~~l~~l~ 467 (722)
T PF05557_consen 442 IKEIEDLEQLVDEYKAELEAQLEELE 467 (722)
T ss_dssp --------------------------
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666665444444444443
No 229
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=85.06 E-value=8.1 Score=47.03 Aligned_cols=157 Identities=24% Similarity=0.343 Sum_probs=57.7
Q ss_pred ccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhh-----------hhhHHHHHHhhhhhHHhhHHHHHhhhhcc----h
Q 004879 65 EIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKD-----------ADERVVMLEMERSSLESSLKELESKLSIS----Q 129 (725)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 129 (725)
.+..+..++...+.-+..+...++.++.....-.. -...+..|++|...|+..+..||.++... .
T Consensus 462 ~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~ 541 (722)
T PF05557_consen 462 QLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEKLTLQGE 541 (722)
T ss_dssp --------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT-
T ss_pred HHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 34556667777777676777777777777654322 23467778888888888888888888651 1
Q ss_pred hhhhccccc--hhhhhhHHH--HHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhh-hhhHHHhHHHHHhHH
Q 004879 130 EDVAKLSTL--KVECKDLYE--KVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDE-ANIYKLSSEKMQQYN 204 (725)
Q Consensus 130 ~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 204 (725)
-+.++..-| +.-=..-++ |-..|.. .=..|++|+.++..|++--.. .++...+. .
T Consensus 542 ~~~~~trVL~lr~NP~~~~~~~k~~~l~~--------------L~~En~~L~~~l~~le~~~~~~~~~~p~~~------~ 601 (722)
T PF05557_consen 542 FNPSKTRVLHLRDNPTSKAEQIKKSTLEA--------------LQAENEDLLARLRSLEEGNSQPVDAVPTSS------L 601 (722)
T ss_dssp -BTTTEEEEEESS-HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHTTTT------------------
T ss_pred cCCCCceeeeeCCCcHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhcccCCCCCcccccchh------h
Confidence 122222212 111111122 2222221 223577888877766543211 11111111 1
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 004879 205 ELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQD 241 (725)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (725)
..+++.+..|++.+...+-.+.-+-+.|...+.+|.+
T Consensus 602 ~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~ 638 (722)
T PF05557_consen 602 ESQEKEIAELKAELASAEKRNQRLKEVFKAKSQEFRE 638 (722)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334445555555555555555556666666666655
No 230
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=84.85 E-value=72 Score=40.05 Aligned_cols=65 Identities=20% Similarity=0.280 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHHhHhhh--hhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 004879 172 QNQELRKKVDKLEESLDEA--NIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQD 241 (725)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (725)
|.+.+.++.+.|++.+... .|.+. +....-.++.++.....+...|.+|..++...+.-..+-++
T Consensus 837 ~l~~~~~~~~~l~~e~~~l~~kv~~~-----~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~ 903 (1174)
T KOG0933|consen 837 QLEQLEKQISSLKSELGNLEAKVDKV-----EKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSD 903 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH-----HhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhc
Confidence 3445556666666655432 22222 22333445556666666667777777776666555444443
No 231
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=84.54 E-value=34 Score=43.06 Aligned_cols=73 Identities=21% Similarity=0.302 Sum_probs=40.1
Q ss_pred CccchhcccCcccchhhHhhhhhhhhhccchhHH------HHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhh
Q 004879 54 PANEDLVLNNSEIHSFSKELDSLKTENLSLKNDI------KVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLS 126 (725)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (725)
|-....+..+..+-.++.|++.||.+=+..++-. +..+++-.+.++..+.+..++.|-..+++-|+++...+.
T Consensus 394 PevNQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 394 PEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334455555566666666554433222211 122233345666677777777777777777777777664
No 232
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=83.70 E-value=92 Score=40.07 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=29.1
Q ss_pred hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhh
Q 004879 99 DADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVE 141 (725)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (725)
-++.+...|+-|++.+++.+..+|..+..+ ..-.+|..++.|
T Consensus 170 l~~a~~~~lqae~~~l~~~~~~l~~~l~s~-~~~~~L~~~q~d 211 (1109)
T PRK10929 170 LAQAQLTALQAESAALKALVDELELAQLSA-NNRQELARLRSE 211 (1109)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHH
Confidence 345567778889999999999888887744 344455555554
No 233
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=83.41 E-value=1.3e+02 Score=38.26 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=10.3
Q ss_pred HHHhHHHHHHHHHHHhhc
Q 004879 20 VELLEDQLQKLQHELTHR 37 (725)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~ 37 (725)
++.+.++++.|..+++=.
T Consensus 257 ~e~~~~~l~~Lk~k~~W~ 274 (1074)
T KOG0250|consen 257 LEDLKENLEQLKAKMAWA 274 (1074)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555666665555544
No 234
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=83.27 E-value=77 Score=34.83 Aligned_cols=32 Identities=34% Similarity=0.666 Sum_probs=25.8
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhh
Q 004879 213 LLEERLQRSDEEIHSYVQLYQESVKEFQDTLHS 245 (725)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (725)
.+.. +.....+...+|..|..-.++||+||.+
T Consensus 203 ~~~~-~~~~E~~Lr~QL~~Y~~Kf~efq~tL~k 234 (309)
T PF09728_consen 203 QVQT-LKETEKELREQLNLYSEKFEEFQDTLNK 234 (309)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 5666778889999999999999999986
No 235
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=83.26 E-value=6.8 Score=43.05 Aligned_cols=129 Identities=22% Similarity=0.279 Sum_probs=69.1
Q ss_pred hhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhh-cchhhhhccccchhhhhhHHHHHHHHHHHHH
Q 004879 79 ENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLS-ISQEDVAKLSTLKVECKDLYEKVENLQGLLA 157 (725)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (725)
.-..|++|.+.|...+..+. +-+-.+....+.|+..+..|..... ....|-.+|..++.+-...-.+++..+..|+
T Consensus 157 ~~~~L~~D~~~L~~~~~~l~---~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~ 233 (325)
T PF08317_consen 157 NLELLQEDYAKLDKQLEQLD---ELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELA 233 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666655554443 2333444445555555555554433 5567888888888888888888887777776
Q ss_pred HHhhhhhhHHH----HhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHH
Q 004879 158 KATKQADQAIS----VLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEE 216 (725)
Q Consensus 158 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (725)
....+..+--. .-.+-++++..+..++..+++...|. . .-+..++.++.+||.
T Consensus 234 el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t--~----~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 234 ELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWT--R----SEVKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--H----HHHHHHHHHHHHHHH
Confidence 65555433211 11222333333333333333332221 1 123567777777776
No 236
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.17 E-value=41 Score=39.43 Aligned_cols=197 Identities=23% Similarity=0.331 Sum_probs=98.4
Q ss_pred chhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHH--HHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhh
Q 004879 67 HSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVV--MLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKD 144 (725)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (725)
|.|-+.|+.|..|--+.+..|+.+|+.+-...-.-.++. .++.|-++|+.|-..=+. =+.++-.|+-|-|.
T Consensus 46 ~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~-------yl~kI~eleneLKq 118 (772)
T KOG0999|consen 46 EDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEY-------YLQKILELENELKQ 118 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHH-------HHHHHHHHHHHHHH
Confidence 455666777777777777777777777766555555554 356666776544322121 22344445555555
Q ss_pred HHHHHHHHHHHHHHHhhhh----hhHHHHhhhhHHHHHHHHHHH----------HhHhhhhhHH---HhHHHHHhHH-HH
Q 004879 145 LYEKVENLQGLLAKATKQA----DQAISVLQQNQELRKKVDKLE----------ESLDEANIYK---LSSEKMQQYN-EL 206 (725)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~---~~~~~~~~~~-~~ 206 (725)
+-..++|.|.=.++.++-. +.-..|=.|...|++.+..++ .-|+|.||.- .++-.+-|.- +=
T Consensus 119 ~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEg 198 (772)
T KOG0999|consen 119 LRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEG 198 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhH
Confidence 6566666665555544332 222334444444554444333 1355555541 2222221111 23
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHH--HHH--HHHHhhhhHHhhhhh-----cc--CCCCCCCChHHHHHHHHHHh
Q 004879 207 MQQKMKLLEERLQRSDEEIHSYVQLYQES--VKE--FQDTLHSLKEESKKR-----AV--HEPVDDMPWEFWSRLLLIID 275 (725)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~ll~~d 275 (725)
++..++.|||... -.+|+++.-..+ |.+ .-..|+.|+.|.+.+ -+ -..+++| ...++|+.-||
T Consensus 199 lkheikRleEe~e----lln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkkEL~q~~n~e~~--~~~n~l~~sld 272 (772)
T KOG0999|consen 199 LKHEIKRLEEETE----LLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNALKKELSQYRNAEDI--SSLNHLLFSLD 272 (772)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcchhhh--hhhhhhheecc
Confidence 4555666666433 233444332222 333 335677777776543 11 2233333 33567777777
Q ss_pred h
Q 004879 276 G 276 (725)
Q Consensus 276 ~ 276 (725)
|
T Consensus 273 g 273 (772)
T KOG0999|consen 273 G 273 (772)
T ss_pred c
Confidence 6
No 237
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=82.61 E-value=3.9 Score=41.84 Aligned_cols=94 Identities=24% Similarity=0.295 Sum_probs=53.8
Q ss_pred hhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhc-chhhhhccccchhhhhhHHH-HHHHHHHHHHHHhhhhhhHHHHhh
Q 004879 94 LNSVKDADERVVMLEMERSSLESSLKELESKLSI-SQEDVAKLSTLKVECKDLYE-KVENLQGLLAKATKQADQAISVLQ 171 (725)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 171 (725)
.+....+|--.+.|++|-+.|++.|...|..-.. ...+-++...+|.|...|.+ |-+.|+.+-....+-....-.|-.
T Consensus 88 fS~~~~~dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~ 167 (195)
T PF12761_consen 88 FSATEGTDWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVRE 167 (195)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHH
Confidence 3456677778889999988888888888887776 34444555566666555554 444555443311111112222222
Q ss_pred hhHHHHHHHHHHHHhH
Q 004879 172 QNQELRKKVDKLEESL 187 (725)
Q Consensus 172 ~~~~~~~~~~~~~~~~ 187 (725)
.=..++.+|+-||+-|
T Consensus 168 Dl~~ie~QV~~Le~~L 183 (195)
T PF12761_consen 168 DLDTIEEQVDGLESHL 183 (195)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 2334455666666555
No 238
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=82.50 E-value=72 Score=33.92 Aligned_cols=159 Identities=12% Similarity=0.193 Sum_probs=73.7
Q ss_pred ccCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHH----HHHh---hhhhHHhhHHHHHhhhhcchhhhh
Q 004879 61 LNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVV----MLEM---ERSSLESSLKELESKLSISQEDVA 133 (725)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 133 (725)
.....||...+||..+|+- +..|-..|+.+-..-.|+. .++. |-+-.=+.+..||..+...
T Consensus 41 na~~kv~~~d~eF~e~~ey-------~d~l~~~l~~ieki~~Rv~kr~~~l~~d~~e~~~~f~~ws~lE~~l~~~----- 108 (240)
T cd07667 41 TGGYKLRSRPLEFAAIGDY-------LDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSGLEGELAEP----- 108 (240)
T ss_pred HHHhccCCCChHHHHHHHH-------HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----
Confidence 3344578888888776654 4444444444443333333 1222 3333334444444333221
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHH
Q 004879 134 KLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKL 213 (725)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (725)
|+ ..-.-|+..-..|+..++.-++. .+..=+|+.-=.+.+++.|+.-+.-++--|+.-.++-+-+.|+..
T Consensus 109 ----L~----~~a~~~~~~s~~l~~l~~~~~~~--yl~~Lke~~~Y~~slk~vlK~RdqkQ~d~E~l~E~l~~rre~~~k 178 (240)
T cd07667 109 ----LE----GVSACIGNCSTALEELTEDMTED--FLPVLREYILYSESMKNVLKKRDQVQAEYEAKLEAVALRKEERPK 178 (240)
T ss_pred ----HH----HHHHHHHHHHHHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 12223333333333333333221 223333344444444444444444444444444444455666666
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 004879 214 LEERLQRSDEEIHSYVQLYQESVKEFQD 241 (725)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (725)
||.+++++.++....-+.-...++.|+.
T Consensus 179 Le~~ie~~~~~ve~f~~~~~~E~~~Fe~ 206 (240)
T cd07667 179 VPTDVEKCQDRVECFNADLKADMERWQN 206 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666665555555555555544
No 239
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=82.01 E-value=23 Score=39.00 Aligned_cols=50 Identities=24% Similarity=0.300 Sum_probs=21.2
Q ss_pred hhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhH-HHHHHHHHHHHHH
Q 004879 109 MERSSLESSLKELESKLSISQEDVAKLSTLKVECKDL-YEKVENLQGLLAK 158 (725)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 158 (725)
+..+.++..+.++..+...-...+..|.....|+... -++++.++.-|..
T Consensus 170 ~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~ 220 (325)
T PF08317_consen 170 KQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAE 220 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444433222 3444444444433
No 240
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=81.98 E-value=68 Score=33.74 Aligned_cols=119 Identities=17% Similarity=0.265 Sum_probs=78.3
Q ss_pred hhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhh
Q 004879 111 RSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEA 190 (725)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (725)
.-.|+-.++|+++.+..+-.-+.++-..+.. +..+++.++...++-.++|..| +...|.+|-+++=.=+.+|+..
T Consensus 26 ~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~---~e~~~~~~~~~~~k~e~~A~~A--l~~g~E~LAr~al~~~~~le~~ 100 (225)
T COG1842 26 EKMLEQAIRDMESELAKARQALAQAIARQKQ---LERKLEEAQARAEKLEEKAELA--LQAGNEDLAREALEEKQSLEDL 100 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHH
Confidence 3668889999999999999888888887774 8889999999998888888888 5566666666655544444432
Q ss_pred h-hHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 004879 191 N-IYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQE 234 (725)
Q Consensus 191 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (725)
. -.+-.-..+..-.+-++-.+..||.++.........+......
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~ 145 (225)
T COG1842 101 AKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAA 145 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111112223344555666666666666666665555544433
No 241
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=81.89 E-value=44 Score=40.24 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHhhh
Q 004879 229 VQLYQESVKEFQDTLHS 245 (725)
Q Consensus 229 ~~~~~~~~~~~~~~~~~ 245 (725)
.++....+++|+..+..
T Consensus 485 ~~~~~~~l~~~~~~l~~ 501 (650)
T TIGR03185 485 ADKAKKTLKEFREKLLE 501 (650)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444445555554433
No 242
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=81.68 E-value=32 Score=33.47 Aligned_cols=38 Identities=8% Similarity=0.270 Sum_probs=25.8
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHH
Q 004879 70 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVML 107 (725)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (725)
..++..+-++...+.+|++..+..+..+....+.+...
T Consensus 32 ~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~ 69 (213)
T cd00176 32 LESVEALLKKHEALEAELAAHEERVEALNELGEQLIEE 69 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 34555666666777788887777777777766655543
No 243
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=81.59 E-value=80 Score=38.58 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=13.4
Q ss_pred hhHHHhHHHHHHHHHHHhhc
Q 004879 18 IHVELLEDQLQKLQHELTHR 37 (725)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~ 37 (725)
.---.|.+-+|||++|+-++
T Consensus 455 ~~~~~L~e~IeKLk~E~d~e 474 (762)
T PLN03229 455 PSELALNEMIEKLKKEIDLE 474 (762)
T ss_pred CCChHHHHHHHHHHHHHHHH
Confidence 33345667788888887765
No 244
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=81.37 E-value=49 Score=33.96 Aligned_cols=28 Identities=29% Similarity=0.345 Sum_probs=16.1
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhh
Q 004879 70 SKELDSLKTENLSLKNDIKVLKAELNSV 97 (725)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (725)
-.+++.++.||..||.=----..+|...
T Consensus 25 q~~l~~l~~ENk~Lk~lq~Rq~kAL~k~ 52 (194)
T PF15619_consen 25 QRKLQELRKENKTLKQLQKRQEKALQKY 52 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777778877775433333334443
No 245
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=81.35 E-value=79 Score=33.59 Aligned_cols=179 Identities=15% Similarity=0.240 Sum_probs=99.4
Q ss_pred hhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccc----hhhhhh
Q 004879 69 FSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTL----KVECKD 144 (725)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 144 (725)
++.-+..+..=|..+.+--..|+...+.+..+...+..+|++-..|+..+..|..+...+.++..++..- ....++
T Consensus 12 ~t~~~~~~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~ 91 (264)
T PF06008_consen 12 LTGAWPAPYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQD 91 (264)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666667777777777777888888888888888888888888888888777766555321 112233
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHH--HhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHH--HHHHHHHHHHhhh
Q 004879 145 LYEKVENLQGLLAKATKQADQAIS--VLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELM--QQKMKLLEERLQR 220 (725)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 220 (725)
|-..|.+++.-+.....++...-. .--.+.+|+++....+..|++---..|....+-.-.++- +.=+..+...+++
T Consensus 92 L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~ 171 (264)
T PF06008_consen 92 LEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQK 171 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333343333333333323222111 112456788888888888877633332221111111110 0111223333455
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhH
Q 004879 221 SDEEIHSYVQLYQESVKEFQDTLHSLK 247 (725)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (725)
-..+..++...+...+.+|.+-|.+|.
T Consensus 172 ~~~~~~~l~~~i~~~L~~~~~kL~Dl~ 198 (264)
T PF06008_consen 172 PQQENESLAEAIRDDLNDYNAKLQDLR 198 (264)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666665543
No 246
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.13 E-value=1.3e+02 Score=38.47 Aligned_cols=52 Identities=21% Similarity=0.201 Sum_probs=29.6
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHH
Q 004879 70 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKEL 121 (725)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (725)
..+...+.++-..|+..|..+..+......+.+++..+++--+.++..+.++
T Consensus 826 ~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~ 877 (1293)
T KOG0996|consen 826 TASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEEL 877 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666777777777776666666666555554444444333333
No 247
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=80.75 E-value=43 Score=31.95 Aligned_cols=41 Identities=22% Similarity=0.421 Sum_probs=18.8
Q ss_pred HHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHH
Q 004879 114 LESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQG 154 (725)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (725)
...+=...|..+.-=-+|+-.|..++-++..+-..+..|+.
T Consensus 40 a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~ 80 (132)
T PF07926_consen 40 AQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKA 80 (132)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444544445555555555554443333333333
No 248
>PRK10698 phage shock protein PspA; Provisional
Probab=80.63 E-value=47 Score=34.67 Aligned_cols=119 Identities=14% Similarity=0.180 Sum_probs=82.5
Q ss_pred hhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHH-HHHHHHhHhhh
Q 004879 112 SSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKK-VDKLEESLDEA 190 (725)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 190 (725)
..|+-.++|||..+......+...-..+ +.+-.+++.++...++-..+|..| +-..+.||-++ +.+=...-+..
T Consensus 27 k~l~q~i~em~~~l~~~r~alA~~~A~~---k~~er~~~~~~~~~~~~e~kA~~A--l~~G~EdLAr~AL~~K~~~~~~~ 101 (222)
T PRK10698 27 KLVRLMIQEMEDTLVEVRSTSARALAEK---KQLTRRIEQAEAQQVEWQEKAELA--LRKEKEDLARAALIEKQKLTDLI 101 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHH
Confidence 3567777888877777766665554433 346677777777777777777777 44566676655 22222223344
Q ss_pred hhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 004879 191 NIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQES 235 (725)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (725)
.-++-..+.++....-+++++..|+..+......-..|+-+++.-
T Consensus 102 ~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A 146 (222)
T PRK10698 102 ATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAA 146 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555667777888899999999999999999999998888766
No 249
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=80.17 E-value=1.2e+02 Score=36.46 Aligned_cols=27 Identities=33% Similarity=0.577 Sum_probs=13.9
Q ss_pred hhHhhhhhhhhhccchhHHHHHHHHhh
Q 004879 69 FSKELDSLKTENLSLKNDIKVLKAELN 95 (725)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (725)
|.++++.|+.+=..+..+++.++.++.
T Consensus 333 l~~~l~~l~~~i~~~~~~~~~l~~~~~ 359 (594)
T PF05667_consen 333 LQEQLDELESQIEELEAEIKMLKSSLK 359 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554443
No 250
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=80.14 E-value=75 Score=32.58 Aligned_cols=77 Identities=18% Similarity=0.321 Sum_probs=32.6
Q ss_pred HhhhhHHHHHHHHHHHHhHhhhhhH-HHhHHHH---HhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH-HHHHHHHh
Q 004879 169 VLQQNQELRKKVDKLEESLDEANIY-KLSSEKM---QQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQES-VKEFQDTL 243 (725)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 243 (725)
.+.+.+.+.+.+++.++.++..... +-..++. .+-..-.++|+...+.+++.....+..=++++... +++|+++|
T Consensus 133 ~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l 212 (236)
T PF09325_consen 133 KLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSML 212 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555544443 1112222 11222333444444444444444444444444443 44444444
Q ss_pred hh
Q 004879 244 HS 245 (725)
Q Consensus 244 ~~ 245 (725)
..
T Consensus 213 ~~ 214 (236)
T PF09325_consen 213 EE 214 (236)
T ss_pred HH
Confidence 44
No 251
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=80.08 E-value=55 Score=38.81 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q 004879 206 LMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTL 243 (725)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (725)
|-+-.+..+++.++..+++|..+-+..+..+++++..-
T Consensus 268 L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~ 305 (560)
T PF06160_consen 268 LKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVE 305 (560)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33346666777777777777777777777766665533
No 252
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=80.04 E-value=25 Score=35.52 Aligned_cols=92 Identities=23% Similarity=0.415 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHHHHHH--h----hhhhhHHHHhhhhHHHH------HHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHH
Q 004879 143 KDLYEKVENLQGLLAKA--T----KQADQAISVLQQNQELR------KKVDKLEESLDEANIYKLSSEKMQQYNELMQQK 210 (725)
Q Consensus 143 ~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (725)
+.+|.+++.|...||-. . ..+-+...+|..-++++ .||.+|+.-|...-|....... -++.-|-+--
T Consensus 57 ~~l~k~~~eL~~YLDP~~~e~~~l~~~~K~~~ILa~e~~i~~~~~~Leki~~L~pvL~se~i~~vp~~~-~kL~~L~~~~ 135 (174)
T PF07426_consen 57 KELFKRIEELNKYLDPNFIEEIQLPDSAKLQIILAEEDEIKSTAELLEKIKSLEPVLDSESIRNVPELC-DKLQKLSQIH 135 (174)
T ss_pred HHHHHHHHHHHHHcCchhhhhcccchHHHHHHHHHccHHHHHHHHHHHHHHHhhhhcCcHHHhhhHHHH-HHHHHHHHHH
Confidence 45899999999877631 1 11224444555555554 5677777777766665443332 2333444444
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHH
Q 004879 211 MKLLEERLQRSDEEIHSYVQLYQESV 236 (725)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (725)
++.-|+ .+...++.+.+++.|-..|
T Consensus 136 ~~Q~e~-~~~ls~~~~~Ll~~YN~ii 160 (174)
T PF07426_consen 136 LEQQEE-SEELSEEVQELLQQYNKII 160 (174)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 555555 6677778888888887763
No 253
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=80.02 E-value=39 Score=40.41 Aligned_cols=52 Identities=33% Similarity=0.420 Sum_probs=24.1
Q ss_pred HhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhh
Q 004879 71 KELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKL 125 (725)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (725)
+|++.|+++=-.++.+|+.+..++...+. .+..++.|....++...++|+.+
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~---~~~q~~~e~~~~~~~~~~le~~~ 379 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKS---SLKQLEEELEEKEAENEELEEEL 379 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555544455555555444444332 23334444444445555555443
No 254
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=79.96 E-value=50 Score=40.73 Aligned_cols=30 Identities=30% Similarity=0.498 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHhhh
Q 004879 222 DEEIHSYVQLYQESVKEFQDTLHSLKEESK 251 (725)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (725)
..+...-++.|+..+++...+++.|..+-.
T Consensus 460 e~e~~Eele~~~~e~~~lk~~~~~LQ~eLs 489 (775)
T PF10174_consen 460 EKERQEELETYQKELKELKAKLESLQKELS 489 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 334445556667666776776666665533
No 255
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.94 E-value=1.1e+02 Score=38.51 Aligned_cols=86 Identities=26% Similarity=0.307 Sum_probs=58.3
Q ss_pred cCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhh
Q 004879 62 NNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVE 141 (725)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (725)
..+.+..|+..++++..+++...-++...+.-|. ...+-+.++++.-+.++.+|++=|+.+...+++..++..-..+
T Consensus 292 m~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~---~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~ 368 (1174)
T KOG0933|consen 292 MGGEVKALEDKLDSLQNEITREETSLNLKKETLN---GEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQE 368 (1174)
T ss_pred hchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3445568899999999999988888877776665 3455566777777777777777777777777666665544443
Q ss_pred hhhHHHHHH
Q 004879 142 CKDLYEKVE 150 (725)
Q Consensus 142 ~~~~~~~~~ 150 (725)
-..++++.+
T Consensus 369 ~s~~~e~~e 377 (1174)
T KOG0933|consen 369 DSKLLEKAE 377 (1174)
T ss_pred HHHHHHHHH
Confidence 334444443
No 256
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=79.75 E-value=1.6e+02 Score=36.03 Aligned_cols=152 Identities=20% Similarity=0.221 Sum_probs=84.7
Q ss_pred ccchhhHhhhhhhhhhccchhHHHHHHHHh-----------hhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhh
Q 004879 65 EIHSFSKELDSLKTENLSLKNDIKVLKAEL-----------NSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVA 133 (725)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (725)
.+-+++++|..+-+++.-+-..++...++. .++.+-|..-++|-.||.......+.|.....+..+.+.
T Consensus 434 ~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~ 513 (698)
T KOG0978|consen 434 QVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQIL 513 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666555554444333333322 344556666777777777777778888777777777777
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHH
Q 004879 134 KLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKL 213 (725)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (725)
.+++-.. .+-.++-+|+..+...|+.+..-+. ++....+++|..=..+.=.+-+.+.+|.-.+-+++++..
T Consensus 514 ~l~~~~~---~~~~~i~~leeq~~~lt~~~~~l~~------el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~ 584 (698)
T KOG0978|consen 514 TLKASVD---KLELKIGKLEEQERGLTSNESKLIK------ELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQ 584 (698)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHhhHhhhhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655433 4566777777777776665544322 233333333333333332333334444455556666666
Q ss_pred HHHHhhhchHHH
Q 004879 214 LEERLQRSDEEI 225 (725)
Q Consensus 214 ~~~~~~~~~~~~ 225 (725)
+++++..+..++
T Consensus 585 i~~~~~e~~~el 596 (698)
T KOG0978|consen 585 IQEQYAELELEL 596 (698)
T ss_pred HHHHHHHHHHHH
Confidence 666555554443
No 257
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=79.54 E-value=68 Score=37.95 Aligned_cols=16 Identities=38% Similarity=0.384 Sum_probs=7.1
Q ss_pred HHhhhhhHHhhHHHHH
Q 004879 107 LEMERSSLESSLKELE 122 (725)
Q Consensus 107 ~~~~~~~~~~~~~~~~ 122 (725)
++++...|+..+.|||
T Consensus 187 ~~~eld~L~~ql~ELe 202 (563)
T TIGR00634 187 LAQRLDFLQFQLEELE 202 (563)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 258
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.45 E-value=30 Score=40.41 Aligned_cols=101 Identities=26% Similarity=0.355 Sum_probs=74.0
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHH
Q 004879 68 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYE 147 (725)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (725)
.-.+|+++-+.||--||+-+..|..+ .++.++++..|..+-++|.|+.-.+.|+| ++|.+--..=-|
T Consensus 328 E~~EeIe~~~ke~kdLkEkv~~lq~~---l~eke~sl~dlkehassLas~glk~ds~L----------k~leIalEqkkE 394 (654)
T KOG4809|consen 328 ERLEEIESFRKENKDLKEKVNALQAE---LTEKESSLIDLKEHASSLASAGLKRDSKL----------KSLEIALEQKKE 394 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhhhh----------hHHHHHHHHHHH
Confidence 45688999999999999999999984 46778889999999999988887776654 444442112236
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHH
Q 004879 148 KVENLQGLLAKATKQADQAISVLQQNQELRKKVDK 182 (725)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (725)
+.-.+.+.|-+|.|..|.|- +--.-.|+++.|++
T Consensus 395 ec~kme~qLkkAh~~~ddar-~~pe~~d~i~~le~ 428 (654)
T KOG4809|consen 395 ECSKMEAQLKKAHNIEDDAR-MNPEFADQIKQLEK 428 (654)
T ss_pred HHHHHHHHHHHHHHhhHhhh-cChhhHHHHHHHHH
Confidence 67778899999999999984 33344455555543
No 259
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=79.36 E-value=5.6 Score=42.50 Aligned_cols=71 Identities=8% Similarity=-0.055 Sum_probs=49.4
Q ss_pred CEEEEeecCcCCCCHHHHHHHHHHhhcCCcEE-EEEcCCC-cc-cccH-----------------HHHHHhcCeEEEcCC
Q 004879 633 PLVGCITRLVPQKGVHLIRHAIYRTLELGGQF-ILLGSSP-VP-HIQV-----------------YPILLSSFSFLRKHI 692 (725)
Q Consensus 633 plV~fVGRL~~qKGvdlLieA~~~L~~~~iqL-VIvG~Gp-~~-~le~-----------------~~iyAaADIfVlPS~ 692 (725)
.++++.|-..+.+....+++++..+. .+.++ +++|.+. .. .+++ ..+|+.||++|.+
T Consensus 172 ~iLi~~GG~d~~~~~~~~l~~l~~~~-~~~~i~vv~G~~~~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aDl~Is~-- 248 (279)
T TIGR03590 172 RVLVSFGGADPDNLTLKLLSALAESQ-INISITLVTGSSNPNLDELKKFAKEYPNIILFIDVENMAELMNEADLAIGA-- 248 (279)
T ss_pred eEEEEeCCcCCcCHHHHHHHHHhccc-cCceEEEEECCCCcCHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCCEEEEC--
Confidence 47888888888776778888887653 34454 3678753 21 1111 1899999999995
Q ss_pred cccchHHHHHHcCCCcc
Q 004879 693 FNICNLYIKLGQGGDLT 709 (725)
Q Consensus 693 ~EpfGLv~LEAMg~~~~ 709 (725)
.|.|..|++.++.|
T Consensus 249 ---~G~T~~E~~a~g~P 262 (279)
T TIGR03590 249 ---AGSTSWERCCLGLP 262 (279)
T ss_pred ---CchHHHHHHHcCCC
Confidence 78999998855555
No 260
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=79.28 E-value=14 Score=44.98 Aligned_cols=128 Identities=20% Similarity=0.268 Sum_probs=69.8
Q ss_pred hHHHhHHHHHHHHHHHhhcccCcccchhhhhccCCCccchhcccCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhh
Q 004879 19 HVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVK 98 (725)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (725)
-.+.|++||+.++++|... -.+++..|.+|-++--+.++ +..+.
T Consensus 268 a~~fL~~qL~~l~~~L~~a--------------------------------E~~l~~fr~~~~~~d~~~ea-~~~l~--- 311 (726)
T PRK09841 268 SLEFLQRQLPEVRSELDQA--------------------------------EEKLNVYRQQRDSVDLNLEA-KAVLE--- 311 (726)
T ss_pred HHHHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHcCCCCCCHHH-HHHHH---
Confidence 4788999999999999874 23455555555333211111 11111
Q ss_pred hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHH
Q 004879 99 DADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRK 178 (725)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (725)
.+..|+.+.+.++..+++|..++....-.| ..+-.+...|+..++....+..+.-..-.+..+|++
T Consensus 312 ----~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v----------~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R 377 (726)
T PRK09841 312 ----QIVNVDNQLNELTFREAEISQLYKKDHPTY----------RALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSR 377 (726)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHhcccCchH----------HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 233355555556666666655543333333 234445666777777666666555555555666666
Q ss_pred HHHHHHHhHhhhhhHHHhHHHHHh
Q 004879 179 KVDKLEESLDEANIYKLSSEKMQQ 202 (725)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~ 202 (725)
.++-.+ ++|.....++++
T Consensus 378 ~~~~~~------~lY~~lL~r~~e 395 (726)
T PRK09841 378 DVEAGR------AVYLQLLNRQQE 395 (726)
T ss_pred HHHHHH------HHHHHHHHHHHH
Confidence 666554 345555544443
No 261
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=79.17 E-value=22 Score=39.17 Aligned_cols=35 Identities=26% Similarity=0.265 Sum_probs=19.9
Q ss_pred HHhhhhhHHhhHHHHHhhhhcchhhhhccccchhh
Q 004879 107 LEMERSSLESSLKELESKLSISQEDVAKLSTLKVE 141 (725)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (725)
|.+.-..++.-+-+|..+...-+..+..|..++.|
T Consensus 163 L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e 197 (312)
T smart00787 163 LMKELELLNSIKPKLRDRKDALEEELRQLKQLEDE 197 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44555555556666666666555555555555554
No 262
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=79.05 E-value=4.1 Score=40.36 Aligned_cols=98 Identities=32% Similarity=0.381 Sum_probs=57.1
Q ss_pred HhHHHHHHHHHHHhhcccCc----ccchhhhhccCCCccchhcccCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhh
Q 004879 22 LLEDQLQKLQHELTHRGVSE----HSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSV 97 (725)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (725)
+--..+.|.=..|...|... |...-.|.+|+... ...+..+..+..++..|++|...|+.++..|+++|...
T Consensus 30 ~~K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~----~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 30 VGKTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELE----VPSPEELAELDAEIKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred ccHHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccC----CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555554432 22223344544322 13455677788888889999999999999888888876
Q ss_pred hhh------hhHHHHHHhhhhhHHhhHHHHHh
Q 004879 98 KDA------DERVVMLEMERSSLESSLKELES 123 (725)
Q Consensus 98 ~~~------~~~~~~~~~~~~~~~~~~~~~~~ 123 (725)
... ...+..|++|...|++.|..|.+
T Consensus 106 ~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 106 SSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 543 34444555555555555544443
No 263
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=79.00 E-value=26 Score=41.55 Aligned_cols=101 Identities=25% Similarity=0.358 Sum_probs=76.7
Q ss_pred hhhhhHHHhHHHHHHHHHHHhhcccCcccchhhhhccCCCccchhcccCcccchhhHhhhhhhhhhccchhHHHHHHHHh
Q 004879 15 QEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAEL 94 (725)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (725)
-.+-++.-+|.+.+-||+.++.-..+ ..+ ...+.+|....-|+..-.||..|-+||+.+++.+
T Consensus 246 ~aq~ri~~lE~e~e~L~~ql~~~N~~------------~~~-----~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~ 308 (629)
T KOG0963|consen 246 DAQQRIVFLEREVEQLREQLAKANSS------------KKL-----AKIDDIDALGSVLNQKDSEIAQLSNDIERLEASL 308 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh------------hhh-----ccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34556677889999999988763222 111 2346689999999999999999999999999988
Q ss_pred hhhhhh-hhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhh
Q 004879 95 NSVKDA-DERVVMLEMERSSLESSLKELESKLSISQEDVA 133 (725)
Q Consensus 95 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (725)
.+--++ -.-|..||+|-....+.|.+|+.+|.. +.|.-
T Consensus 309 ~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~-~sDYe 347 (629)
T KOG0963|consen 309 VEEREKHKAQISALEKELKAKISELEELKEKLNS-RSDYE 347 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hccHH
Confidence 765544 456888999999999999999988754 35543
No 264
>PRK11281 hypothetical protein; Provisional
Probab=78.61 E-value=47 Score=42.61 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=14.6
Q ss_pred HHhhHHHHHhhhhcchhhhhccccc
Q 004879 114 LESSLKELESKLSISQEDVAKLSTL 138 (725)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (725)
||+.|.++|..+...|++.+...+.
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~Nsq 150 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQ 150 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666665555433
No 265
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=78.60 E-value=42 Score=38.39 Aligned_cols=162 Identities=17% Similarity=0.137 Sum_probs=95.7
Q ss_pred hcccCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhh----------cc
Q 004879 59 LVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLS----------IS 128 (725)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 128 (725)
++..++.+|.+.+||..+|-|--.-++|++.+..+ +-.|+.+--.+|+..++||+... ++
T Consensus 297 i~qs~~kstas~~E~ee~rve~~~s~ed~~~~q~q----------~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~h~~ka~ 366 (554)
T KOG4677|consen 297 IIQSPDKSTASRKEFEETRVELPFSAEDSAHIQDQ----------YTLLRSQIIDIEAQDRHLESAGQTQIFRKHPRKAS 366 (554)
T ss_pred ccCCCCcchhHHHHHHHHHhcccccHHHHHHHHHH----------HHHHHHHHHHHHHHHHhHHHHhHHHHHHhhhHhhh
Confidence 34667789999999999999999999999887654 34455666666777777776553 34
Q ss_pred hhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHH
Q 004879 129 QEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQ 208 (725)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (725)
+..+-.+-++++||---. -|.-..-+-+..++-. ..+++..-+|++-...|..-.-......++.- .-++-|++.
T Consensus 367 ~~~~~~~l~~~~ec~~~e--~e~~~~~~~r~~~~~q--ski~dk~~el~kl~~~l~~r~~~~s~~~l~~~-~~qLt~tl~ 441 (554)
T KOG4677|consen 367 ILNMPLVLTLFYECFYHE--TEAEGTFSSRVNLKKQ--SKIPDKQYELTKLAARLKLRAWNDSVDALFTT-KNQLTYTLK 441 (554)
T ss_pred hhhchHHHHHHHHHHHHH--HHHhhhhhhhccchhh--ccCcchHHHHHHHHHHHHHHhhhhhHHHHhch-hHHHHHHHH
Confidence 555555667778874432 2222222222222111 12344444555544444433333334444433 234778888
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 004879 209 QKMKLLEERLQRSDEEIHSYVQLYQESV 236 (725)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (725)
||-..||. +-.-++-.+..|+..|+-|
T Consensus 442 qkq~~le~-v~~~~~~ln~~lerLq~~~ 468 (554)
T KOG4677|consen 442 QKQIGLER-VVEILHKLNAPLERLQEYV 468 (554)
T ss_pred HHHHHHHH-HHHHHhhhhhhHHHHHHHh
Confidence 88888877 5555555555666655553
No 266
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=78.46 E-value=29 Score=40.05 Aligned_cols=28 Identities=4% Similarity=0.144 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 004879 208 QQKMKLLEERLQRSDEEIHSYVQLYQES 235 (725)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (725)
++.+..|+.+.+...+.-..+++++++.
T Consensus 354 ~~el~~L~Re~~~~~~~Y~~l~~r~eea 381 (498)
T TIGR03007 354 EAELTQLNRDYEVNKSNYEQLLTRRESA 381 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666667777888888876
No 267
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=77.78 E-value=39 Score=39.95 Aligned_cols=41 Identities=20% Similarity=0.214 Sum_probs=23.6
Q ss_pred chhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHh
Q 004879 83 LKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELES 123 (725)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (725)
++..-+..++.-.+..+-.+.......+...|+-.+.|||+
T Consensus 159 ~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~ 199 (557)
T COG0497 159 YQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELEE 199 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555555555555555566666667777664
No 268
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=77.70 E-value=63 Score=33.52 Aligned_cols=119 Identities=14% Similarity=0.177 Sum_probs=78.4
Q ss_pred hhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHH-HHHHHhHhhh
Q 004879 112 SSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKV-DKLEESLDEA 190 (725)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 190 (725)
..|+-.++||+..+..+...+...-..+. .+-.+++.++...++-.++|..| +-..+.||-+.. .+-...-+..
T Consensus 27 ~~l~q~irem~~~l~~ar~~lA~~~a~~k---~~e~~~~~~~~~~~~~~~~A~~A--l~~G~EdLAr~Al~~k~~~~~~~ 101 (219)
T TIGR02977 27 KMIRLIIQEMEDTLVEVRTTSARTIADKK---ELERRVSRLEAQVADWQEKAELA--LSKGREDLARAALIEKQKAQELA 101 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888887777665544 35566777777777777777777 445566665543 2222223334
Q ss_pred hhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 004879 191 NIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQES 235 (725)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (725)
.-++-.-+.++....-++.++..|+..++.....-..++-+++.-
T Consensus 102 ~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A 146 (219)
T TIGR02977 102 EALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAA 146 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555677777788888888888888777777776666554
No 269
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=77.25 E-value=54 Score=40.08 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=33.7
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhh----hhhhhHHHHHHhhhhhHHhhHHH
Q 004879 70 SKELDSLKTENLSLKNDIKVLKAELNSV----KDADERVVMLEMERSSLESSLKE 120 (725)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 120 (725)
.+.-..|-.|||.++..+-.++.+|-+. ..-++.+-.|||+|+-+..-++.
T Consensus 315 eqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~ 369 (1265)
T KOG0976|consen 315 EQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRS 369 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHH
Confidence 3444567788888888777776666554 34566677788888775544433
No 270
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=77.10 E-value=1.7e+02 Score=34.89 Aligned_cols=166 Identities=19% Similarity=0.238 Sum_probs=72.0
Q ss_pred hhhhhHHHhHHHHHHHHHHHhhcccCcccchhhhhccCCCccchhcccCcccchhhHhhhhhhhhhcc--chhHHHHHHH
Q 004879 15 QEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLS--LKNDIKVLKA 92 (725)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 92 (725)
+-+..|+-+.+....+|+.|...+.+=|...+ .++..+. .+-+...+|+.|.+.--- -++-+..++.
T Consensus 137 ~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~--------~le~~l~---~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~ 205 (569)
T PRK04778 137 KNREEVEQLKDLYRELRKSLLANRFSFGPALD--------ELEKQLE---NLEEEFSQFVELTESGDYVEAREILDQLEE 205 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccchHH--------HHHHHHH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 34455666666667777776665444332222 2111111 111122222222222211 1223344444
Q ss_pred HhhhhhhhhhHHHHHHhhhhh-HHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhH--HHH
Q 004879 93 ELNSVKDADERVVMLEMERSS-LESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQA--ISV 169 (725)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 169 (725)
.+..+...-+.+=.|-+++.. +-..|.||..-...-.++=-.+..+.++ .+++.|+..+..+.+..... -.+
T Consensus 206 ~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~-----~~i~~l~~~i~~~~~~l~~l~l~~~ 280 (569)
T PRK04778 206 ELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIE-----KEIQDLKEQIDENLALLEELDLDEA 280 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChH-----HHHHHHHHHHHHHHHHHHhcChHHH
Confidence 444444444444444444443 4444444444433333333334433332 44444444444432222111 113
Q ss_pred hhhhHHHHHHHHHHHHhHhhhhhHHHh
Q 004879 170 LQQNQELRKKVDKLEESLDEANIYKLS 196 (725)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (725)
-..++++.+++|.|-+.|+....-+-+
T Consensus 281 ~~~~~~i~~~Id~Lyd~lekE~~A~~~ 307 (569)
T PRK04778 281 EEKNEEIQERIDQLYDILEREVKARKY 307 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777655444333
No 271
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=76.98 E-value=17 Score=40.96 Aligned_cols=168 Identities=21% Similarity=0.288 Sum_probs=84.0
Q ss_pred ccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHH--hhhhcchhhhhcc-ccchhh
Q 004879 65 EIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELE--SKLSISQEDVAKL-STLKVE 141 (725)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~ 141 (725)
.--++.+.|..|+-|=..|+++++..|..-...++....-..+...-+.|...|..|. ..+.. .-+..+ ++-...
T Consensus 88 e~Es~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~~e~~~~~~l~~~~~~L~~~L~~l~l~~~lg~--~~~~~~~~~~~~~ 165 (388)
T PF04912_consen 88 EKESPEQKLQRLRREVEELKEELEKRKADSKESDEEKISPEELAQQLEELSKQLDSLKLEELLGE--ETAQDLSDPQKAL 165 (388)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCChhhHHHHHHHHHHHHHHhhcccccch--hhhcccccchhhH
Confidence 3446777888888888888888887776544433222222334455555666666651 11111 111111 122233
Q ss_pred hhhHHHHHHHHHHHHHHHhhhh-------------h-hHHHHhhhhHHHHHHHHHHHHhHhhhh--hHHH----hHHHHH
Q 004879 142 CKDLYEKVENLQGLLAKATKQA-------------D-QAISVLQQNQELRKKVDKLEESLDEAN--IYKL----SSEKMQ 201 (725)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~ 201 (725)
++.+-..++.++.--..+.... + .....+.+=-+|.+++-.||..|.-.. ...| .+-.+.
T Consensus 166 ~~kl~~~l~~~k~~~~~~~~~~~~~~ityel~~~p~~~~~~~la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~ 245 (388)
T PF04912_consen 166 SKKLLSQLESFKSSSGAGSSPANSDHITYELYYPPEQAKSQQLARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLL 245 (388)
T ss_pred HHHHHHhhhhcccccccCCCCCCCCceeeeeecCcccchhhHHHHHHHHHHHHHHHHHHhCCCccccccccccCCcchHH
Confidence 3444444444431110000000 0 112346667789999999999998721 1122 122344
Q ss_pred hHHHHHHHHHHHHHH-HhhhchHHHHHHHHHHHH
Q 004879 202 QYNELMQQKMKLLEE-RLQRSDEEIHSYVQLYQE 234 (725)
Q Consensus 202 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 234 (725)
.-+..+++|+.+|.. +|+.....+.++++++..
T Consensus 246 ~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~ 279 (388)
T PF04912_consen 246 PALNELERQLSLLDPAKLDSIERRLKSLLSELEE 279 (388)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 456677777877743 344444445554444443
No 272
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=76.77 E-value=6.3 Score=34.37 Aligned_cols=30 Identities=33% Similarity=0.490 Sum_probs=25.9
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhh
Q 004879 68 SFSKELDSLKTENLSLKNDIKVLKAELNSV 97 (725)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (725)
.....++.|+.||-.||=.|-||...|...
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~~~ 33 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQKL 33 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence 346789999999999999999999999843
No 273
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=76.38 E-value=1.8e+02 Score=37.36 Aligned_cols=37 Identities=27% Similarity=0.507 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhH
Q 004879 147 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIY 193 (725)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (725)
..++|||.--.+|.+.|+ +++++++...++|++++..
T Consensus 1542 ~ra~~L~s~A~~a~~~A~----------~v~~~ae~V~eaL~~Ad~A 1578 (1758)
T KOG0994|consen 1542 ARAENLQSEAERARSRAE----------DVKGQAEDVVEALEEADVA 1578 (1758)
T ss_pred HHHHHHHHHHHHHHhHHH----------HHHHHHHHHHHHHHHHHHH
Confidence 456666655555444443 4566666677777766543
No 274
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=76.36 E-value=1.1e+02 Score=32.55 Aligned_cols=50 Identities=22% Similarity=0.314 Sum_probs=35.8
Q ss_pred hccchhHHHHHHHHhhhhhhhhhHHHHHHhhh----hhHHhhHHHHHhhhhcch
Q 004879 80 NLSLKNDIKVLKAELNSVKDADERVVMLEMER----SSLESSLKELESKLSISQ 129 (725)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 129 (725)
|..++.+|+.++.-|..-+++|..+...=.+. ..|.....+|++.+-.++
T Consensus 79 ~~~l~~~l~~~~~~L~~A~~sD~~~~~~~~~~~~~l~~L~~~~~~L~~~lp~~~ 132 (296)
T PF13949_consen 79 NASLRKELQKYREYLEQASESDSQLRSKLESIEENLELLSGPIEELEASLPSSS 132 (296)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHS--B-
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCChhhHHhhCCCCC
Confidence 45788999999999999988888877654443 346777778877776655
No 275
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=75.88 E-value=2.1e+02 Score=35.50 Aligned_cols=15 Identities=27% Similarity=0.386 Sum_probs=9.5
Q ss_pred HHHhHHHHHHHHHHH
Q 004879 20 VELLEDQLQKLQHEL 34 (725)
Q Consensus 20 ~~~~~~~~~~~~~~~ 34 (725)
++.+|+++..|++.+
T Consensus 247 l~~le~Ei~~L~~~~ 261 (775)
T PF10174_consen 247 LRDLEDEIYRLRSRG 261 (775)
T ss_pred HHHHHHHHHHHHhcc
Confidence 344777777776644
No 276
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=75.51 E-value=74 Score=38.90 Aligned_cols=9 Identities=33% Similarity=0.560 Sum_probs=6.8
Q ss_pred HHHHHHhhc
Q 004879 29 KLQHELTHR 37 (725)
Q Consensus 29 ~~~~~~~~~ 37 (725)
.||.||.+.
T Consensus 174 ~LrkEL~~~ 182 (717)
T PF09730_consen 174 ALRKELDQH 182 (717)
T ss_pred HHHHHHHHh
Confidence 578888884
No 277
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.06 E-value=86 Score=38.55 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=30.3
Q ss_pred HHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 004879 199 KMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQES 235 (725)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (725)
++-+-+++..||+..+-++++..+++|..+-+++..+
T Consensus 845 ~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl 881 (970)
T KOG0946|consen 845 NLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSL 881 (970)
T ss_pred chhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhH
Confidence 4556678999999999999999999998887776554
No 278
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=75.04 E-value=47 Score=36.89 Aligned_cols=30 Identities=27% Similarity=0.471 Sum_probs=15.0
Q ss_pred hHHHHHHhhhhhHHhhHHHHHhhhhcchhh
Q 004879 102 ERVVMLEMERSSLESSLKELESKLSISQED 131 (725)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (725)
..+..++.+...+++.++.++.++..++.+
T Consensus 151 ~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~ 180 (423)
T TIGR01843 151 AQIKQLEAELAGLQAQLQALRQQLEVISEE 180 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555443
No 279
>PF13514 AAA_27: AAA domain
Probab=74.89 E-value=2.4e+02 Score=36.38 Aligned_cols=17 Identities=47% Similarity=0.690 Sum_probs=8.1
Q ss_pred hHHHhHHHHHHHHHHHh
Q 004879 19 HVELLEDQLQKLQHELT 35 (725)
Q Consensus 19 ~~~~~~~~~~~~~~~~~ 35 (725)
..+-++.++.+++.++.
T Consensus 674 ~~~~l~~~~~~~~~~~~ 690 (1111)
T PF13514_consen 674 RREQLEEELQQLEQELE 690 (1111)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555554443
No 280
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=74.63 E-value=72 Score=38.59 Aligned_cols=66 Identities=18% Similarity=0.219 Sum_probs=34.0
Q ss_pred hHHHhHHHHHHHHHHHhhcccCcccchhhhhccCCCccchhcccCcccchhhHhhhhhhhhhccchhHHHHHHHHh
Q 004879 19 HVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAEL 94 (725)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (725)
..--+-.|+++|.++|... .+. ...+..+..++ .+-.+..+...|..|++|-..=.+.+..++.++
T Consensus 125 ef~el~~qie~l~~~l~g~-~~~---~~~~~~D~~dl------sl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I 190 (660)
T KOG4302|consen 125 EFKELYHQIEKLCEELGGP-EDL---PSFLIADESDL------SLEKLEELREHLNELQKEKSDRLEKVLELKEEI 190 (660)
T ss_pred HHHHHHHHHHHHHHHhcCC-ccC---CcccccCcccc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667888898888765 111 01111122222 223455566666666666555445555544444
No 281
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=74.55 E-value=2e+02 Score=34.53 Aligned_cols=56 Identities=29% Similarity=0.278 Sum_probs=29.3
Q ss_pred hhhhhhhhccchhHHH----HHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchh
Q 004879 73 LDSLKTENLSLKNDIK----VLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQE 130 (725)
Q Consensus 73 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (725)
-..+++.+..+..-|+ +.++++ -.+--++...|..+--.+.+.++.+|++...-|.
T Consensus 151 ~e~l~k~~~~~~~~ie~~a~~~e~~~--~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~ 210 (629)
T KOG0963|consen 151 KERLRKLEQLLEIFIENAANETEEKL--EQEWAEREAGLKDEEQNLQEQLEELEKKISSLQS 210 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666665555 333333 2333445555555555566666666655554433
No 282
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=74.53 E-value=44 Score=32.67 Aligned_cols=64 Identities=30% Similarity=0.469 Sum_probs=28.0
Q ss_pred hhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHH
Q 004879 84 KNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVE 150 (725)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (725)
|..|+.|+++++.++. .+..|+-|-..+.+.-.+|...+-.-|+-|+.|.++..+|..+-..+|
T Consensus 51 k~eie~L~~el~~lt~---el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E 114 (140)
T PF10473_consen 51 KAEIETLEEELEELTS---ELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKE 114 (140)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4444444444443322 222333444444444444444444444555555555555554444333
No 283
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=74.39 E-value=1.4e+02 Score=32.71 Aligned_cols=178 Identities=20% Similarity=0.312 Sum_probs=99.3
Q ss_pred CcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHH--------------HHhhhhhHHhhHHHHHhhhhcc
Q 004879 63 NSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVM--------------LEMERSSLESSLKELESKLSIS 128 (725)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 128 (725)
|-.|+.+.+...+++++---+-+.++.+|.+.+++-..-.-++. .....-.++..++.||.++--+
T Consensus 47 n~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~ 126 (294)
T COG1340 47 NAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTS 126 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhc
Confidence 45677888888888888777777788887776665433222221 1122223677778888777655
Q ss_pred hhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhh--hhhHHHhHHHHHhHHHH
Q 004879 129 QEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDE--ANIYKLSSEKMQQYNEL 206 (725)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 206 (725)
+-... . -..+-.++..|+..|..+.++-++. .+-++|..++|.+..-..+ ..|-+++.++|.-.+.+
T Consensus 127 ~L~~e-----~--E~~lvq~I~~L~k~le~~~k~~e~~----~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m 195 (294)
T COG1340 127 VLTPE-----E--ERELVQKIKELRKELEDAKKALEEN----EKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEM 195 (294)
T ss_pred CCChH-----H--HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43222 1 1346677778888888777666554 3345666667666655443 35677777776544444
Q ss_pred HH--HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhhhHHhhh
Q 004879 207 MQ--QKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESK 251 (725)
Q Consensus 207 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (725)
++ ++..-+-.+-+..|+++--+...+...=++|-..-..|....+
T Consensus 196 ~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k 242 (294)
T COG1340 196 IKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEK 242 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 32 2222222233334444444444444444445444444444444
No 284
>PRK11519 tyrosine kinase; Provisional
Probab=74.14 E-value=26 Score=42.78 Aligned_cols=81 Identities=17% Similarity=0.163 Sum_probs=42.1
Q ss_pred HHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHH
Q 004879 106 MLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEE 185 (725)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (725)
.++.+.+.++..+.+|.+++......+- .+-++...|+..++....+....-..-++.++|+++++-.++
T Consensus 315 ~l~~ql~~l~~~~~~l~~~y~~~hP~v~----------~l~~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~ 384 (719)
T PRK11519 315 NIDAQLNELTFKEAEISKLYTKEHPAYR----------TLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQ 384 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCcHHH----------HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555443333332 233445566666666655555544445566677777665554
Q ss_pred hHhhhhhHHHhHHHHHh
Q 004879 186 SLDEANIYKLSSEKMQQ 202 (725)
Q Consensus 186 ~~~~~~~~~~~~~~~~~ 202 (725)
+|.....++++
T Consensus 385 ------lY~~lL~r~~e 395 (719)
T PRK11519 385 ------VYMQLLNKQQE 395 (719)
T ss_pred ------HHHHHHHHHHH
Confidence 44444444443
No 285
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=74.06 E-value=37 Score=32.88 Aligned_cols=15 Identities=20% Similarity=0.492 Sum_probs=10.3
Q ss_pred HHHHHHHHhhcccCc
Q 004879 27 LQKLQHELTHRGVSE 41 (725)
Q Consensus 27 ~~~~~~~~~~~~~~~ 41 (725)
+.-+.++|..+|..-
T Consensus 4 ~~yiN~~L~s~G~~~ 18 (151)
T PF11559_consen 4 IEYINQQLLSRGYPS 18 (151)
T ss_pred HHHHHHHHHHCCCCC
Confidence 445677888887663
No 286
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=73.98 E-value=18 Score=39.99 Aligned_cols=20 Identities=10% Similarity=0.292 Sum_probs=14.5
Q ss_pred hhHHHhHHHHHHHHHHHhhc
Q 004879 18 IHVELLEDQLQKLQHELTHR 37 (725)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~ 37 (725)
-..+.+++|+++++++|...
T Consensus 170 ~a~~fl~~ql~~~~~~l~~a 189 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNAT 189 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888887664
No 287
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=73.97 E-value=1.1e+02 Score=37.94 Aligned_cols=142 Identities=19% Similarity=0.159 Sum_probs=68.8
Q ss_pred hHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHH-------HHHHHH
Q 004879 85 NDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVEN-------LQGLLA 157 (725)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 157 (725)
+-|+.+..-++.+-.....+..+.-+++.++..+.-.++.-..... ....-..+|+.+-+++|. |..-|.
T Consensus 537 ~fieE~s~tLdwIls~~~SLqDv~s~~sEIK~~f~~~ss~e~E~~~---~dea~~~~~~el~eelE~le~eK~~Le~~L~ 613 (769)
T PF05911_consen 537 RFIEEFSLTLDWILSNCFSLQDVSSMRSEIKKNFDGDSSSEAEINS---EDEADTSEKKELEEELEKLESEKEELEMELA 613 (769)
T ss_pred HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHhhhhcccccccccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444433332111100 012223334444455544 445555
Q ss_pred HHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 004879 158 KATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQES 235 (725)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (725)
+++.+.+..- .|-++...++..|+.-|+.++= +......-+.-+++....+|-++.....|++.+..++..+
T Consensus 614 ~~~d~lE~~~---~qL~E~E~~L~eLq~eL~~~ke---S~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~L 685 (769)
T PF05911_consen 614 SCQDQLESLK---NQLKESEQKLEELQSELESAKE---SNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSL 685 (769)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 6555555443 3335666677777776663332 2222223344556666666776666666776666666655
No 288
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=73.89 E-value=95 Score=35.13 Aligned_cols=111 Identities=24% Similarity=0.303 Sum_probs=72.5
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhh-hhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHH
Q 004879 68 SFSKELDSLKTENLSLKNDIKVLKAELNSVKD-ADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLY 146 (725)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (725)
.+..-++.++++=..+.++|.....+...... ..+.+......-..|-..+.++.++-..++.-|.++ |++.
T Consensus 22 ~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~i------t~dI- 94 (383)
T PF04100_consen 22 NLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEI------TRDI- 94 (383)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH-
Confidence 33444455555555566666555444443222 234444444445556666666666666666665443 3343
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhh
Q 004879 147 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANI 192 (725)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (725)
.-||.|.+..-+++.+|+.=|-|-.-+++|+..+..-+-
T Consensus 95 -------k~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y 133 (383)
T PF04100_consen 95 -------KQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKKRQY 133 (383)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 248999999999999999999999999999999887553
No 289
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=73.59 E-value=1.5e+02 Score=36.29 Aligned_cols=19 Identities=11% Similarity=0.284 Sum_probs=15.9
Q ss_pred hHHHhHHHHHHHHHHHhhc
Q 004879 19 HVELLEDQLQKLQHELTHR 37 (725)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~ 37 (725)
-.+.|++|+.++|++|...
T Consensus 195 a~~~L~~ql~~l~~~l~~a 213 (754)
T TIGR01005 195 AADFLAPEIADLSKQSRDA 213 (754)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3578999999999998875
No 290
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=73.48 E-value=4 Score=38.65 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=26.8
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
|||+++.. |.....--.+....|..+.+++||+|.++.|.
T Consensus 1 Mki~fvmD---pi~~i~~~kDTT~alm~eAq~RGhev~~~~~~ 40 (119)
T PF02951_consen 1 MKIAFVMD---PIESIKPYKDTTFALMLEAQRRGHEVFYYEPG 40 (119)
T ss_dssp -EEEEEES----GGG--TTT-HHHHHHHHHHHTT-EEEEE-GG
T ss_pred CeEEEEeC---CHHHCCCCCChHHHHHHHHHHCCCEEEEEEcC
Confidence 79999965 44333334678889999999999999999876
No 291
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=73.32 E-value=94 Score=38.00 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhhhchHHHHH
Q 004879 207 MQQKMKLLEERLQRSDEEIHS 227 (725)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~ 227 (725)
.++|...||..++++..|..+
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~ 563 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQ 563 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 292
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=72.94 E-value=31 Score=36.41 Aligned_cols=28 Identities=18% Similarity=0.400 Sum_probs=13.2
Q ss_pred hhhhhHHHHHHhhhhhHHhhHHHHHhhh
Q 004879 98 KDADERVVMLEMERSSLESSLKELESKL 125 (725)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (725)
+.+.+++..+..|+..|...++.|+.++
T Consensus 38 ~~sQ~~id~~~~e~~~L~~e~~~l~~e~ 65 (251)
T PF11932_consen 38 QQSQKRIDQWDDEKQELLAEYRQLEREI 65 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555444444443
No 293
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=72.84 E-value=39 Score=33.88 Aligned_cols=96 Identities=24% Similarity=0.344 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHhhcccCcccchhhhhccCCCccchhcccCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhh
Q 004879 22 LLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDAD 101 (725)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (725)
++...+.+||.|+.. .--.+++.++.|+..|+.|++.|+++|.+--+.-
T Consensus 55 ~~~a~~~eLr~el~~-------------------------------~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l 103 (177)
T PF07798_consen 55 LFKAAIAELRSELQN-------------------------------SRKSEFAELRSENEKLQREIEKLRQELREEINKL 103 (177)
T ss_pred HHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHH---------hhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHH
Q 004879 102 ERVVMLE---------MERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAIS 168 (725)
Q Consensus 102 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (725)
..-..++ .|-+.++..+++++.|+. .++.+|+..++.+..+.=+.+.
T Consensus 104 ~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~--------------------~ei~~lr~~iE~~K~~~lr~~~ 159 (177)
T PF07798_consen 104 RAEVKLDLNLEKGRIREEQAKQELKIQELNNKID--------------------TEIANLRTEIESLKWDTLRWLV 159 (177)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHH
No 294
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.67 E-value=1.4e+02 Score=34.70 Aligned_cols=38 Identities=32% Similarity=0.406 Sum_probs=17.5
Q ss_pred cchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHH
Q 004879 82 SLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELE 122 (725)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (725)
.+++.+..|...+..+-..-.+ +.+.+-.|.+.+.++-
T Consensus 278 e~~~~i~~l~~~l~~l~~~~~~---~~~~~~~l~~~~~~~g 315 (503)
T KOG2273|consen 278 EKKEKIDKLEQQLKKLSKQVQR---LVKRRRELASNLAELG 315 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 4555666666555554433333 3333333444443333
No 295
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=72.56 E-value=11 Score=41.20 Aligned_cols=57 Identities=30% Similarity=0.292 Sum_probs=41.9
Q ss_pred HhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHH
Q 004879 71 KELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVE 150 (725)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (725)
.|...||.||-+||..++.||.++... |.|+- . +++-|+++
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerL----------E~e~l--~---------------------------s~V~E~ve 72 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERL----------ENEML--R---------------------------SHVCEDVE 72 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHH----------HHHhh--h---------------------------hhhhhHHH
Confidence 577889999999999999999887554 22211 0 14567888
Q ss_pred HHHHHHHHHhhhhhhH
Q 004879 151 NLQGLLAKATKQADQA 166 (725)
Q Consensus 151 ~~~~~~~~~~~~~~~~ 166 (725)
..|...+++.|-.+.+
T Consensus 73 t~dv~~d~i~Kimnk~ 88 (420)
T PF07407_consen 73 TNDVIYDKIVKIMNKM 88 (420)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888887777776
No 296
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=72.45 E-value=69 Score=33.88 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=15.0
Q ss_pred hhhhhhhhccchhHHHHHHHHhhhhhh
Q 004879 73 LDSLKTENLSLKNDIKVLKAELNSVKD 99 (725)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (725)
|..++.+...++.+-+.|+.++.+.-+
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555556655555544
No 297
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=72.27 E-value=48 Score=37.62 Aligned_cols=150 Identities=25% Similarity=0.308 Sum_probs=78.5
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHH-----HHHhhhhcchhhhhccccchh
Q 004879 66 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLK-----ELESKLSISQEDVAKLSTLKV 140 (725)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 140 (725)
.-+|..-+.+|..+|-.||-|++-+|.+-.-+.+..- -++.+++. +-|..|+ ++.=..|+.+|+-
T Consensus 45 ~e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr---------~l~~Asv~IQaraeqeeEfi-sntLlkkiqal~k 114 (552)
T KOG2129|consen 45 GESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENR---------PLLLASVEIQARAEQEEEFI-SNTLLKKIQALFK 114 (552)
T ss_pred HHHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCc---------hhhhhhhHHhhccchHHHHH-HHHHHHHHHHhhc
Confidence 3467888999999999999999999987655544332 22222110 0011110 0111112222221
Q ss_pred h-------------h--hhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhH-----HHHHHHHHHHH--hHhhhhhHHHhHH
Q 004879 141 E-------------C--KDLYEKVENLQGLLAKATKQADQAISVLQQNQ-----ELRKKVDKLEE--SLDEANIYKLSSE 198 (725)
Q Consensus 141 ~-------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~~~~ 198 (725)
| | .+|-+|...|+.-=- .-+ ..|.|.| .|-+|+.|||. .++.++..+|.++
T Consensus 115 eketla~~Ye~eee~lTn~Lsrkl~qLr~ek~----~lE---q~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre 187 (552)
T KOG2129|consen 115 EKETLATVYEVEEEFLTNPLSRKLKQLRHEKL----PLE---QLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRRE 187 (552)
T ss_pred cccccchhhhhhhhhccCchhHHHHHHHhhhc----cHH---HHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHH
Confidence 1 1 123344444431100 111 2344444 45567777764 5777778888888
Q ss_pred HHHhHHHHHHHHHH---HHHHHhhhchHHHHHHHHHH
Q 004879 199 KMQQYNELMQQKMK---LLEERLQRSDEEIHSYVQLY 232 (725)
Q Consensus 199 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 232 (725)
+.|-.+-+-|++=. .|=.|+|+++.|...+.++|
T Consensus 188 ~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~Kl 224 (552)
T KOG2129|consen 188 AVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKL 224 (552)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88776666555422 23334566666666655555
No 298
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=72.14 E-value=27 Score=33.24 Aligned_cols=51 Identities=22% Similarity=0.277 Sum_probs=23.4
Q ss_pred HhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHH
Q 004879 108 EMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAK 158 (725)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (725)
+++|..+...|-.|-......++-..++..|+.+++++-.+-+++-.||..
T Consensus 43 ~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGE 93 (120)
T PF12325_consen 43 EAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGE 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333434433333333333333333444444555555555555555555554
No 299
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=72.03 E-value=28 Score=37.59 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=22.1
Q ss_pred CC-cHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 348 VG-GLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 348 vG-Glg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
.| |=......++++|++ ||+|.+++..
T Consensus 9 ~G~GH~~r~~ala~~L~~-g~ev~~~~~~ 36 (321)
T TIGR00661 9 EGFGHTTRSVAIGEALKN-DYEVSYIASG 36 (321)
T ss_pred cCccHHHHHHHHHHHHhC-CCeEEEEEcC
Confidence 56 767777889999999 9999999743
No 300
>PRK10869 recombination and repair protein; Provisional
Probab=71.44 E-value=1.8e+02 Score=34.59 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHhhhc
Q 004879 207 MQQKMKLLEERLQRS 221 (725)
Q Consensus 207 ~~~~~~~~~~~~~~~ 221 (725)
.-+++..+|+|+...
T Consensus 294 dp~~l~~ie~Rl~~l 308 (553)
T PRK10869 294 DPNRLAELEQRLSKQ 308 (553)
T ss_pred CHHHHHHHHHHHHHH
Confidence 345666666666543
No 301
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=71.34 E-value=48 Score=33.19 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=17.8
Q ss_pred hhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchh
Q 004879 96 SVKDADERVVMLEMERSSLESSLKELESKLSISQE 130 (725)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (725)
++.+...++..+++|...++..+.++++.+...+.
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~ 116 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKE 116 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555444433
No 302
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=71.05 E-value=7.2 Score=34.89 Aligned_cols=61 Identities=23% Similarity=0.299 Sum_probs=55.7
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcc
Q 004879 68 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSIS 128 (725)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (725)
+...|++.+.+.=...+.|++..-..|....-++|.-..||+|...+.+.+...|.+|..-
T Consensus 2 ~V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~L 62 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLL 62 (85)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999999999887643
No 303
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=71.03 E-value=64 Score=31.55 Aligned_cols=89 Identities=27% Similarity=0.343 Sum_probs=51.9
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhH-----------HHHHHhhhhhHHhhHHHHHhhhhcchhhhhccc
Q 004879 68 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADER-----------VVMLEMERSSLESSLKELESKLSISQEDVAKLS 136 (725)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (725)
....+|...+.++.+|++-|.+|..+|..+.+.-+. +..|+-|-+.+.+.+++|+..|..-. ++-.
T Consensus 7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~---sEk~ 83 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLR---SEKE 83 (140)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 446788889999999999999999988765544332 22233344444444444444443322 1223
Q ss_pred cchhhhhhHHHHHHHHHHHHHHH
Q 004879 137 TLKVECKDLYEKVENLQGLLAKA 159 (725)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~ 159 (725)
.|..+|..+.++|..|.......
T Consensus 84 ~L~k~lq~~q~kv~eLE~~~~~~ 106 (140)
T PF10473_consen 84 NLDKELQKKQEKVSELESLNSSL 106 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Confidence 34455666666666666554443
No 304
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=71.01 E-value=20 Score=39.45 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=14.6
Q ss_pred hhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhH
Q 004879 109 MERSSLESSLKELESKLSISQEDVAKLSTLKVECKDL 145 (725)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (725)
.|.+.+++.+.+...+...-++.+.++....-+|+.|
T Consensus 232 ~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~ 268 (312)
T smart00787 232 EELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGF 268 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3333333334433333333333333333333344433
No 305
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=70.83 E-value=1.7e+02 Score=32.30 Aligned_cols=123 Identities=26% Similarity=0.370 Sum_probs=59.9
Q ss_pred HHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHH---HHhhhhHHHHHHHHH-HHHhHhh
Q 004879 114 LESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAI---SVLQQNQELRKKVDK-LEESLDE 189 (725)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~ 189 (725)
+..+|+|++..++.-.....+|..-.. .|-+|.-.|-..+..-.++.|+-+ -+-+|..+-+..+++ |-+-+++
T Consensus 114 fqvtL~diqktla~~~~~n~klre~Ni---eL~eKlkeL~eQy~~re~hidk~~e~kel~~ql~~aKlq~~~~l~a~~ee 190 (391)
T KOG1850|consen 114 FQVTLKDIQKTLAEGRSKNDKLREDNI---ELSEKLKELGEQYEEREKHIDKQIQKKELWEQLGKAKLQEIKLLTAKLEE 190 (391)
T ss_pred HHhHHHHHHHHHHhcchhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 677888888888766655555443333 355555555544444333333321 122222222222222 2333333
Q ss_pred hhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhh
Q 004879 190 ANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHS 245 (725)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (725)
+.|-+--+ +..-..+.+.. +|+ +..........+-.|-.-.+|||.+|.+
T Consensus 191 ~~~~e~~~--glEKd~lak~~---~e~-~~~~e~qlK~ql~lY~aKyeefq~tl~K 240 (391)
T KOG1850|consen 191 ASIQEKKS--GLEKDELAKIM---LEE-MKQVEGQLKEQLALYMAKYEEFQTTLAK 240 (391)
T ss_pred HHHHHHHh--hhhHHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322111 00111222222 333 4444555555666888888999999976
No 306
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=70.58 E-value=18 Score=40.99 Aligned_cols=50 Identities=22% Similarity=0.288 Sum_probs=34.4
Q ss_pred ccCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhh
Q 004879 61 LNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERS 112 (725)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (725)
..+..+..+.+|+..+|++...|..+++.||.++- .+.....-.|+.||-
T Consensus 209 ~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~--~e~~~~~~~LqEEr~ 258 (395)
T PF10267_consen 209 QQNLGLQKILEELREIKESQSRLEESIEKLKEQYQ--REYQFILEALQEERY 258 (395)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHH
Confidence 34456677889999999999999999999998543 122233344444443
No 307
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=70.46 E-value=6.8 Score=45.30 Aligned_cols=93 Identities=13% Similarity=-0.034 Sum_probs=52.8
Q ss_pred HHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhc--CCcEEEEEcCCCcc--cccH-----------------
Q 004879 619 IRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVP--HIQV----------------- 677 (725)
Q Consensus 619 LRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~--~~iqLVIvG~Gp~~--~le~----------------- 677 (725)
.|+.||||+ +..++++..++.. =-...++++.++++ ++.+|++...+... .+.+
T Consensus 275 ~R~~~gLp~---d~vvF~~fn~~~K--I~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~ 349 (468)
T PF13844_consen 275 TRAQYGLPE---DAVVFGSFNNLFK--ISPETLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPV 349 (468)
T ss_dssp ETGGGT--S---SSEEEEE-S-GGG----HHHHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE-
T ss_pred CHHHcCCCC---CceEEEecCcccc--CCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCC
Confidence 378899994 6677777777654 35677888888776 57888887643211 1111
Q ss_pred ---H---HHHHhcCeEEEcCCcccchHHHHHHcCCCccccCCCCCc
Q 004879 678 ---Y---PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNNCEPW 717 (725)
Q Consensus 678 ---~---~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V~~~~~G~ 717 (725)
. ..|..+|+++=|--|=+ |.|.+||+-+|.||++-.+..
T Consensus 350 ~~~~ehl~~~~~~DI~LDT~p~nG-~TTt~dALwmGVPvVTl~G~~ 394 (468)
T PF13844_consen 350 APREEHLRRYQLADICLDTFPYNG-GTTTLDALWMGVPVVTLPGET 394 (468)
T ss_dssp --HHHHHHHGGG-SEEE--SSS---SHHHHHHHHHT--EEB---SS
T ss_pred CCHHHHHHHhhhCCEEeeCCCCCC-cHHHHHHHHcCCCEEeccCCC
Confidence 0 57788999998865533 789999997777776655443
No 308
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=70.29 E-value=45 Score=35.60 Aligned_cols=60 Identities=12% Similarity=0.230 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHhh----------hhHHHHHHHHHHHHhHh------hhhhHHHhHHHHHhHHH
Q 004879 146 YEKVENLQGLLAKATKQADQAISVLQ----------QNQELRKKVDKLEESLD------EANIYKLSSEKMQQYNE 205 (725)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 205 (725)
-.+|++.+.-+|.+.++..+|.-.++ ..++||..+++.+++++ +.+.+.|.+....+..+
T Consensus 127 RK~Le~~RLD~D~~K~r~~~a~~~~~~~~~~~~~~~k~e~lr~e~E~ae~~~e~~kd~~~~~m~~~l~~e~e~~~~ 202 (248)
T cd07619 127 RKHLAKLVLDMDSSRTRWQQSSKSSGLSSNLQPTGAKADALREEMEEAANRMEICRDQLSADMYSFVAKEIDYANY 202 (248)
T ss_pred HHHHHhhHhhHHHHHHHHHhccccccccccccCCCCccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 46888888889999988887754322 34899999999999999 77788777765555444
No 309
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=70.11 E-value=4.1 Score=46.19 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=34.2
Q ss_pred ccCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhh
Q 004879 61 LNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADE 102 (725)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (725)
..+..+..+.+|+..+||+|+.|..+....+.++.+..+..+
T Consensus 386 q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~ 427 (493)
T KOG0804|consen 386 QLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREK 427 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 456778888899999999999999998888888877766654
No 310
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=69.69 E-value=1.4e+02 Score=30.68 Aligned_cols=119 Identities=21% Similarity=0.290 Sum_probs=65.2
Q ss_pred ccchhHHHHHHHHhhhhhh----hhhHHHHHHhhhhhHHhhHHHHHhhhhcc----hhhhhccccchhhhhhHHHHHHHH
Q 004879 81 LSLKNDIKVLKAELNSVKD----ADERVVMLEMERSSLESSLKELESKLSIS----QEDVAKLSTLKVECKDLYEKVENL 152 (725)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 152 (725)
..|+.-|..+...+..+.. .--.-..++++...++..+.+++.+-..| ++|.++---.+. ..+-+.++.|
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k--~~~e~~~~~l 103 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRK--ADLEEQAERL 103 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHHHHHHHHH
Confidence 3444444444444433322 22334467788888888888888876555 555554322222 2455777788
Q ss_pred HHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHH
Q 004879 153 QGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYN 204 (725)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (725)
+..++.++.++++.- .+-.+++.|+..++.-....-...-.-.++.+++
T Consensus 104 ~~~~~~~~~~~~~l~---~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~ 152 (221)
T PF04012_consen 104 EQQLDQAEAQVEKLK---EQLEELEAKLEELKSKREELKARENAAKAQKKVN 152 (221)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777766643 3334555555555554444333333333343333
No 311
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=69.63 E-value=1.2e+02 Score=34.16 Aligned_cols=114 Identities=22% Similarity=0.248 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHH
Q 004879 145 LYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEE 224 (725)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (725)
|-|+.|.|...+.+- .-..++--|+=|=+-.+||+-|.+. -|-|||.-+-+||.+..||||+.=-..|
T Consensus 279 Leesye~Lke~~krd------y~fi~etLQEERyR~erLEEqLNdl------teLqQnEi~nLKqElasmeervaYQsyE 346 (455)
T KOG3850|consen 279 LEESYERLKEQIKRD------YKFIAETLQEERYRYERLEEQLNDL------TELQQNEIANLKQELASMEERVAYQSYE 346 (455)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555544431 1223444456666778888888654 3668888888999999999987643333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHhhhhhccCCCCCCCChHHHHHHHHHH
Q 004879 225 IHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLII 274 (725)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 274 (725)
--+.||+-++.||.-+.+|+---+... -.-++.+.-..|..||+.+
T Consensus 347 ---RaRdIqEalEscqtrisKlEl~qq~qq-v~Q~e~~~na~a~~llgk~ 392 (455)
T KOG3850|consen 347 ---RARDIQEALESCQTRISKLELQQQQQQ-VVQLEGLENAVARRLLGKF 392 (455)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhccHHHHHHHH
Confidence 346778888889998888876554221 1123334334578777743
No 312
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.49 E-value=68 Score=38.96 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q 004879 202 QYNELMQQKMKLLEERLQRSDEEIHSYVQLYQ 233 (725)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (725)
+.-..+|.|+.+.+.+|++++++|--.+..|.
T Consensus 776 ~~r~~LqkrIDa~na~Lrrl~~~Iig~m~~~k 807 (1104)
T COG4913 776 EHRRQLQKRIDAVNARLRRLREEIIGRMSDAK 807 (1104)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 45567889999999999999999877666554
No 313
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=69.45 E-value=76 Score=36.12 Aligned_cols=108 Identities=20% Similarity=0.231 Sum_probs=72.7
Q ss_pred hhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhh-HHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHH
Q 004879 131 DVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQ-AISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQ 209 (725)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (725)
.-..++++.-|-.++-+....|+.-+++...+.-+ .-..++.-|+-+-+..+||+-+.+ ..|-.|+-.+-+||
T Consensus 210 ~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd------~~elHq~Ei~~LKq 283 (395)
T PF10267_consen 210 QNLGLQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLND------LTELHQNEIYNLKQ 283 (395)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 33444455555445555555555555555544332 223455567777788888887765 35778888899999
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhhhH
Q 004879 210 KMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLK 247 (725)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (725)
-+..+||+++=-- +--.+.+++.|+-||.-+.+|+
T Consensus 284 eLa~~EEK~~Yqs---~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 284 ELASMEEKMAYQS---YERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHhHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHH
Confidence 9999999776433 3345678888999999999999
No 314
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=68.49 E-value=1.4e+02 Score=34.92 Aligned_cols=28 Identities=11% Similarity=0.248 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHhhhh
Q 004879 225 IHSYVQLYQESVKEFQDTLHSLKEESKK 252 (725)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (725)
+.++|+=..+.++.|+..++.+..+..+
T Consensus 138 l~~ll~Pl~e~l~~f~~~v~~~~~~~~~ 165 (475)
T PRK10361 138 LNSLLSPLREQLDGFRRQVQDSFGKEAQ 165 (475)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666677777777777776665544
No 315
>PRK11281 hypothetical protein; Provisional
Probab=68.45 E-value=92 Score=40.10 Aligned_cols=51 Identities=18% Similarity=0.311 Sum_probs=33.8
Q ss_pred HhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHH---HHHH---HHHHHHHhhh
Q 004879 195 LSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQL---YQES---VKEFQDTLHS 245 (725)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~ 245 (725)
+..+-.+.+..+++.|-+++++=.+.+++.++.+++. ++++ +++.+++|+.
T Consensus 397 ~~~~~~~~l~~ll~~r~~LL~~l~~~~~~~l~~~~~l~~~q~Ql~~~~~~l~~~L~~ 453 (1113)
T PRK11281 397 VTDEVRDALLQLLDERRELLDQLNKQLNNQLNLAINLQLNQQQLLSVSDSLQSTLTQ 453 (1113)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556677899999999998666677777666655 2333 4555555543
No 316
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=68.25 E-value=1.6e+02 Score=30.69 Aligned_cols=182 Identities=17% Similarity=0.278 Sum_probs=95.3
Q ss_pred chhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhh-ccccchhhhhhHHHHHHHHHHHHHHHhh
Q 004879 83 LKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVA-KLSTLKVECKDLYEKVENLQGLLAKATK 161 (725)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (725)
|+..+...-++.....-|++.+-.--+.|+.|.+-.+.|+.+-...-...+ -+...+-.||. |...++.+.+
T Consensus 20 lk~~v~~~~~~Y~~~vvTee~ik~aKk~rA~LNKl~k~id~~RK~ikk~~~~P~~~Fe~~~K~-------l~~~i~~~~~ 92 (215)
T PF07083_consen 20 LKAEVDEAVEKYKGYVVTEENIKDAKKDRAELNKLKKAIDDKRKEIKKEYSKPIKEFEAKIKE-------LIAPIDEASD 92 (215)
T ss_pred HHHHHHHHHHHhCCcccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH-------HHHHHHHHHH
Confidence 455666666666677778888888899999999888888876554433332 23333344444 4444444444
Q ss_pred hhhhHHHHhhhhHHHHHHHHHHHHhHhhhh----hHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q 004879 162 QADQAISVLQQNQELRKKVDKLEESLDEAN----IYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVK 237 (725)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (725)
..+.-+-...+ +.-+.|.+.+.+-+++.. |....-+..-+-..+|+- -.+++..++|.+.+....+..+
T Consensus 93 ~I~~~ik~~Ee-~~k~~k~~~i~~~~~~~~~~~~v~~~~fe~~~~~~wlnks------~s~kk~~eei~~~i~~~~~~~~ 165 (215)
T PF07083_consen 93 KIDEQIKEFEE-KEKEEKREKIKEYFEEMAEEYGVDPEPFERIIKPKWLNKS------YSLKKIEEEIDDQIDKIKQDLE 165 (215)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCChHHHhhhcchHHhhcC------CcHHHHHHHHHHHHHHHHHHHH
Confidence 44444444333 334455566665554422 111111100111112211 1234444556666665555544
Q ss_pred HHHHHhhhhHHhhhhhccCCCCCCCChHHHHHHHHHHhhhhhcccCChHH
Q 004879 238 EFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLSTSE 287 (725)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~d~~~~~~~~~~~~ 287 (725)
+........++.-.. -+||++-|.++|- +|..+...+..-+
T Consensus 166 ~~~~~~~~i~~~A~~-------~~l~~~~yi~~l~--~g~~l~eil~~i~ 206 (215)
T PF07083_consen 166 EIKAAKQAIEEKAEE-------YGLPADPYIRMLD--YGKTLAEILKQIK 206 (215)
T ss_pred HHHHHHHHHHHHHHH-------cCCCcHHHHHHHH--cCCCHHHHHHHHH
Confidence 444433333333221 5789999998884 4565555444433
No 317
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=68.22 E-value=25 Score=33.44 Aligned_cols=63 Identities=25% Similarity=0.373 Sum_probs=37.0
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcc
Q 004879 66 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSIS 128 (725)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (725)
|+.+--|+..++.|+..|...=..+..++......-+.+....++...|+..+++|+.|...+
T Consensus 25 lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~ 87 (120)
T PF12325_consen 25 LRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTL 87 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555666555555556666666667777777777766543
No 318
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=68.09 E-value=1.9e+02 Score=31.70 Aligned_cols=86 Identities=28% Similarity=0.416 Sum_probs=48.2
Q ss_pred hhHHhhhhhhh-----HHHhHHHHHHHHHHHhhcccCcccchhhhhccCCCccchhcccCcccchhhHhhhhhhhhhccc
Q 004879 9 RIRVAAQEKIH-----VELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSL 83 (725)
Q Consensus 9 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (725)
.||-..|+|.. .+++-+..+.|++.|--.+.+ . ..+|-..+.+|++|+.||..|
T Consensus 17 tik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~---------------l------tkTi~qy~~QLn~L~aENt~L 75 (305)
T PF14915_consen 17 TIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEET---------------L------TKTIFQYNGQLNVLKAENTML 75 (305)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---------------H------HHHHHHHhhhHHHHHHHHHHH
Confidence 45566666643 455566666666655442211 0 123445578999999999765
Q ss_pred hhHHHHHHHHhhhhhhhhhHHH-HHHhhhhhHHhhHHHHH
Q 004879 84 KNDIKVLKAELNSVKDADERVV-MLEMERSSLESSLKELE 122 (725)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 122 (725)
. ++|..-+.+-+|+- .+|-=|+.|-+++.|.+
T Consensus 76 ~-------SkLe~EKq~kerLEtEiES~rsRLaaAi~d~d 108 (305)
T PF14915_consen 76 N-------SKLEKEKQNKERLETEIESYRSRLAAAIQDHD 108 (305)
T ss_pred h-------HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4 45555555555542 23334556666666655
No 319
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=68.00 E-value=2.5e+02 Score=33.37 Aligned_cols=64 Identities=22% Similarity=0.260 Sum_probs=41.9
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhh
Q 004879 68 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQED 131 (725)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (725)
.+..-++.+++.|..|+..++.+++.-.--.+-.+....++++.+.++.....+..++...+.-
T Consensus 310 ~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~ 373 (560)
T PF06160_consen 310 ELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVP 373 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC
Confidence 3456677778888888888888877654444445566667766666666666666665554433
No 320
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=67.59 E-value=1.5e+02 Score=30.31 Aligned_cols=35 Identities=31% Similarity=0.426 Sum_probs=14.8
Q ss_pred hhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHH
Q 004879 84 KNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKEL 121 (725)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (725)
++-+..|...|..+..+-++ +-++|..|-..+.++
T Consensus 30 ~~~~~~le~~Lk~l~~~~~~---l~~~~~~l~~~~~e~ 64 (236)
T PF09325_consen 30 KDYVDKLEEQLKKLYKSLER---LVKRRQELASALAEF 64 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 33444455555444333333 333344444444443
No 321
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=67.51 E-value=74 Score=31.75 Aligned_cols=102 Identities=23% Similarity=0.370 Sum_probs=64.2
Q ss_pred hhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHH
Q 004879 73 LDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENL 152 (725)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (725)
.+..|.|.-.++.+++.+|.++..+-+ .+-.|++.--.....|.+.-..|..-- +.|-|.-|+++.++
T Consensus 22 ~E~~R~E~~~l~~EL~evk~~v~~~I~---evD~Le~~er~aR~rL~eVS~~f~~ys---------E~dik~AYe~A~~l 89 (159)
T PF05384_consen 22 AEQARQEYERLRKELEEVKEEVSEVIE---EVDKLEKRERQARQRLAEVSRNFDRYS---------EEDIKEAYEEAHEL 89 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhcccC---------HHHHHHHHHHHHHH
Confidence 456788888889999999988776554 445566666666667777666664322 23556899999999
Q ss_pred HHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhh
Q 004879 153 QGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDE 189 (725)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (725)
|..|.-...+-.+ .-..-++|++.+..|++.++.
T Consensus 90 Q~~L~~~re~E~q---Lr~rRD~LErrl~~l~~tier 123 (159)
T PF05384_consen 90 QVRLAMLREREKQ---LRERRDELERRLRNLEETIER 123 (159)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 9988764443332 223334444444444444443
No 322
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=67.40 E-value=93 Score=33.62 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=10.3
Q ss_pred HCCCeEEEEeeCCC
Q 004879 364 KKGHLVEIVLPKYD 377 (725)
Q Consensus 364 ~~GHeV~VItP~y~ 377 (725)
+.|..|.|-++.|+
T Consensus 256 ~~G~~v~v~~~~~~ 269 (334)
T TIGR00998 256 RIGQPVTIRSDLYG 269 (334)
T ss_pred CCCCEEEEEEecCC
Confidence 56888888876655
No 323
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=67.33 E-value=21 Score=39.21 Aligned_cols=57 Identities=25% Similarity=0.373 Sum_probs=15.0
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHH---HhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhh
Q 004879 68 SFSKELDSLKTENLSLKNDIKVLKA---ELNSVKDADERVVMLEMERSSLESSLKELESK 124 (725)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (725)
.+..+++..+.|......=++.++. .-.+.++.++.+..|++|...+.+.|++||..
T Consensus 13 ~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e 72 (314)
T PF04111_consen 13 QLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKE 72 (314)
T ss_dssp -----------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555554444433333331 11223444455555555555555555555543
No 324
>PF14992 TMCO5: TMCO5 family
Probab=67.31 E-value=1.1e+02 Score=33.22 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=23.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 004879 197 SEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQES 235 (725)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (725)
++.|.++..-+|+++..||+ .+=....+.-+.+||.-
T Consensus 146 ~eDq~~~i~klkE~L~rmE~--ekE~~lLe~el~k~q~~ 182 (280)
T PF14992_consen 146 CEDQANEIKKLKEKLRRMEE--EKEMLLLEKELSKYQMQ 182 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhch
Confidence 45677777777888877877 44444455556666653
No 325
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=66.97 E-value=1.7e+02 Score=30.55 Aligned_cols=60 Identities=18% Similarity=0.331 Sum_probs=38.1
Q ss_pred chhhHhhhhhhhhhccchhHHHHHHHHhhhhhh--------hhhHHHHHHhhhhhHHhhHHHHHhhhh
Q 004879 67 HSFSKELDSLKTENLSLKNDIKVLKAELNSVKD--------ADERVVMLEMERSSLESSLKELESKLS 126 (725)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (725)
..+...++.+..+|..|..=+..+..-+...-. ....+..+-+||..+-+-|..||.-|+
T Consensus 26 ~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfs 93 (207)
T PF05010_consen 26 QELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFS 93 (207)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHH
Confidence 355777778888888888777776655544222 123355566677666666666666665
No 326
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=66.81 E-value=1.4e+02 Score=32.44 Aligned_cols=115 Identities=24% Similarity=0.304 Sum_probs=68.4
Q ss_pred HhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhH
Q 004879 108 EMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESL 187 (725)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (725)
++.|+.-.+.+..+|.++..-.+. -..+|..+||+.|...-+ .-+++..+.|++|++++
T Consensus 15 drrr~~~~~e~~~l~~~f~elkeq------------~yk~kLa~Lq~~Leel~~---------g~~~eYl~~~~~L~~~~ 73 (291)
T KOG4466|consen 15 DRRRANEESEMSNLEKQFSELKEQ------------MYKDKLAQLQAQLEELGQ---------GTAPEYLKRVKKLDESR 73 (291)
T ss_pred HHhhhhhhhhhhhhhhhhhHHHHH------------HHHHHHHHHHHHHHHHhc---------cccHHHHHHHHHHHHHH
Confidence 456666777777777766543322 246899999988876321 34678888899988887
Q ss_pred hh----hhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHH-HHHHHHHHHHHHHHhhhhHHhhhh
Q 004879 188 DE----ANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSY-VQLYQESVKEFQDTLHSLKEESKK 252 (725)
Q Consensus 188 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 252 (725)
.+ +.||+-++-..-...|. .| ++++..|-.+. +.+|..++-+|+.-..+|+++...
T Consensus 74 kerl~~aely~e~~~e~v~~eYe--------~E-~~aAk~e~E~~~~lLke~l~seleeKkrkieeeR~s 134 (291)
T KOG4466|consen 74 KERLRVAELYREYCVERVEREYE--------CE-IKAAKKEYESKKKLLKENLISELEEKKRKIEEERLS 134 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 54 66666665433222222 22 44444444332 234555566666666666666553
No 327
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=66.81 E-value=2e+02 Score=35.15 Aligned_cols=27 Identities=22% Similarity=0.160 Sum_probs=19.6
Q ss_pred CcHHHHHHHHHHHHHH--CCCeEEEEeeC
Q 004879 349 GGLGDVVAGLGKALQK--KGHLVEIVLPK 375 (725)
Q Consensus 349 GGlg~vV~~LaraL~~--~GHeV~VItP~ 375 (725)
-+...+..++....+. .|+.|.|++..
T Consensus 372 ~sQ~~VF~e~~~lv~S~lDGYnVCIFAYG 400 (670)
T KOG0239|consen 372 ASQDDVFEEVSPLVQSALDGYNVCIFAYG 400 (670)
T ss_pred ccHHHHHHHHHHHHHHHhcCcceeEEEec
Confidence 4667777777766664 79999999743
No 328
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=66.80 E-value=1.7e+02 Score=34.67 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHhhh
Q 004879 145 LYEKVENLQGLLAKATKQADQAISVLQQ 172 (725)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (725)
+-+.++.....|+.+.........-++.
T Consensus 271 ~~~~l~~~~~~l~d~~~~l~~~~~~l~~ 298 (563)
T TIGR00634 271 LAEQVGNALTEVEEATRELQNYLDELEF 298 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4444444444444444444444434433
No 329
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=66.79 E-value=2.1e+02 Score=31.68 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHhhhhh
Q 004879 224 EIHSYVQLYQESVKEFQDTLHSLKEESKKR 253 (725)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (725)
+-+..++.+....+.|.+...+|++-.+.+
T Consensus 289 ~re~~lq~L~~Ay~~y~el~~nl~eG~kFY 318 (339)
T cd09235 289 EREEVLKDLAAAYDAFMELTANLKEGTKFY 318 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 446788888888888888888888777743
No 330
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=66.67 E-value=95 Score=32.73 Aligned_cols=8 Identities=13% Similarity=0.729 Sum_probs=4.9
Q ss_pred CCceEEEE
Q 004879 460 KQPDIIHC 467 (725)
Q Consensus 460 ~kPDIIH~ 467 (725)
..|++++.
T Consensus 236 ~~~~l~~L 243 (251)
T PF11932_consen 236 RAPELLKL 243 (251)
T ss_pred CCcHHhcc
Confidence 45676665
No 331
>PRK10884 SH3 domain-containing protein; Provisional
Probab=66.62 E-value=83 Score=32.63 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=16.6
Q ss_pred HhhhhhhhhhHHHHHHhhhhhHHhhHHHHH
Q 004879 93 ELNSVKDADERVVMLEMERSSLESSLKELE 122 (725)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (725)
.|+.....-+++-.+|+|-+.|++.|.++.
T Consensus 84 ~Ls~~p~~~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 84 QLSTTPSLRTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455566666666666665555544
No 332
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=66.54 E-value=7.7 Score=39.75 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=30.0
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDC 378 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~ 378 (725)
||||+....-. -+.-+..|.++|.+.||+|.|+.|....
T Consensus 1 M~ILlTNDDGi-------~a~Gi~aL~~~L~~~g~~V~VvAP~~~~ 39 (196)
T PF01975_consen 1 MRILLTNDDGI-------DAPGIRALAKALSALGHDVVVVAPDSEQ 39 (196)
T ss_dssp SEEEEE-SS-T-------TSHHHHHHHHHHTTTSSEEEEEEESSST
T ss_pred CeEEEEcCCCC-------CCHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 89999988632 2456778999998888999999998654
No 333
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.48 E-value=42 Score=39.34 Aligned_cols=126 Identities=33% Similarity=0.413 Sum_probs=72.0
Q ss_pred HHHhHHHHHHHHHHHhhcccCcccchhhhhccCCCccchhcccCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhh
Q 004879 20 VELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKD 99 (725)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (725)
+-=||.+|.++|++|+..... ++. +...-..+++-|.-+..+--.||.+|.+.+.
T Consensus 109 I~eleneLKq~r~el~~~q~E--~er-----------------------l~~~~sd~~e~~~~~E~qR~rlr~elKe~Kf 163 (772)
T KOG0999|consen 109 ILELENELKQLRQELTNVQEE--NER-----------------------LEKVHSDLKESNAAVEDQRRRLRDELKEYKF 163 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHH-----------------------HHHHHHHhhhcchhhHHHHHHHHHHHHHHHH
Confidence 345789999999999875332 222 2333344555555555555555555555555
Q ss_pred hhhHHH----HHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHH-------HhhhhhhHHH
Q 004879 100 ADERVV----MLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAK-------ATKQADQAIS 168 (725)
Q Consensus 100 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 168 (725)
-+-|+. .||.|--+|.+.+.-| ..+| -+...|+.|-+.|-|.+|-|...++. |.+|.+.|..
T Consensus 164 RE~RllseYSELEEENIsLQKqVs~L----R~sQ---VEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALe 236 (772)
T KOG0999|consen 164 REARLLSEYSELEEENISLQKQVSNL----RQSQ---VEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALE 236 (772)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHH----hhhh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554443 2333333333332222 1222 23345677777777777766665554 4579999999
Q ss_pred HhhhhHHHH
Q 004879 169 VLQQNQELR 177 (725)
Q Consensus 169 ~~~~~~~~~ 177 (725)
.|++-.+-+
T Consensus 237 Tlq~EReqk 245 (772)
T KOG0999|consen 237 TLQQEREQK 245 (772)
T ss_pred HHHhHHHHH
Confidence 998876643
No 334
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=66.15 E-value=1.1e+02 Score=38.07 Aligned_cols=54 Identities=28% Similarity=0.362 Sum_probs=43.7
Q ss_pred hhhHHHhHHHHHHHHHHHhhcccCcccchhhhhccCCCccchhcccCcccchhhHhhhhhhhhhccchhHHHHHHHHhhh
Q 004879 17 KIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNS 96 (725)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (725)
..++..|-.|+++|+.+|...... .+..|+++|++||+.+..++..+-.+..+
T Consensus 329 ~~~~~~lK~ql~~l~~ell~~~~~---------------------------~~~~ei~sl~~e~~~l~~~~d~~~~e~~e 381 (913)
T KOG0244|consen 329 SFEMLKLKAQLEPLQVELLSKAGD---------------------------ELDAEINSLPFENVTLEETLDALLQEKGE 381 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc---------------------------cchhHHhhhhhhhhhhhhhHHHHhcchhh
Confidence 456788889999999999986422 25789999999999999999988777654
Q ss_pred h
Q 004879 97 V 97 (725)
Q Consensus 97 ~ 97 (725)
.
T Consensus 382 ~ 382 (913)
T KOG0244|consen 382 E 382 (913)
T ss_pred h
Confidence 3
No 335
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=66.13 E-value=26 Score=36.61 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHH
Q 004879 146 YEKVENLQGLLAKATKQADQAISVLQQNQELRKKVD 181 (725)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (725)
..++++|+...++-.+.-|. ++..|+.||++++
T Consensus 178 ~~~~~al~Kq~e~~~~Eydr---Llee~~~Lq~~i~ 210 (216)
T KOG1962|consen 178 QKKVDALKKQSEGLQDEYDR---LLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHcccHHHH---HHHHHHHHHHHHh
Confidence 34555555555553333333 4667777777664
No 336
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=65.41 E-value=98 Score=33.43 Aligned_cols=72 Identities=21% Similarity=0.260 Sum_probs=43.4
Q ss_pred hhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccc---------hhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHh
Q 004879 100 ADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTL---------KVECKDLYEKVENLQGLLAKATKQADQAISVL 170 (725)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (725)
....+..+..+++.|++.++.+|.++..++.++..--.- --.|+...++++..+.-|+.+.++.+.++.-+
T Consensus 133 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l 212 (301)
T PF14362_consen 133 FDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIAAL 212 (301)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 355666677777777777777777777666554322111 14566667777777766666655555444444
Q ss_pred h
Q 004879 171 Q 171 (725)
Q Consensus 171 ~ 171 (725)
+
T Consensus 213 ~ 213 (301)
T PF14362_consen 213 D 213 (301)
T ss_pred H
Confidence 3
No 337
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=64.75 E-value=64 Score=36.17 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=23.8
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 349 GGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 349 GGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
||+|.+-..++++|.+.||+|+++.+.
T Consensus 105 GG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 105 GGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred cCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 778888899999999999999998653
No 338
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=64.67 E-value=2.7e+02 Score=32.10 Aligned_cols=48 Identities=23% Similarity=0.317 Sum_probs=37.6
Q ss_pred hhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhh
Q 004879 84 KNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQED 131 (725)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (725)
+.+.+.|++-=.+.+....++..-.++++.|++.|+++|..+..--.-
T Consensus 34 ~a~~~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~q 81 (420)
T COG4942 34 AADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQ 81 (420)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334466777777788888899999999999999999999877655443
No 339
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=64.50 E-value=3e+02 Score=32.61 Aligned_cols=59 Identities=25% Similarity=0.280 Sum_probs=47.4
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhh
Q 004879 68 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLS 126 (725)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (725)
.|..-|..+|+.|-.||.+|+.+|..-.--...--.+.+++||-..+++.+.++=..+.
T Consensus 313 ~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~ 371 (570)
T COG4477 313 ILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIE 371 (570)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45778889999999999999999987765555556788899999988888887765544
No 340
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=64.42 E-value=10 Score=44.63 Aligned_cols=61 Identities=25% Similarity=0.326 Sum_probs=28.5
Q ss_pred ccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhh
Q 004879 65 EIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKL 125 (725)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (725)
.+-.|..|...|+.+++.||..|+.|+.+|.......+.-....+|-..++..+..||.+|
T Consensus 430 ~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L 490 (652)
T COG2433 430 TVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKEL 490 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555555554444433333344444444444444443
No 341
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=64.15 E-value=33 Score=37.14 Aligned_cols=94 Identities=14% Similarity=0.172 Sum_probs=57.1
Q ss_pred HHHHHHHcCCCCCCCCCCEE-EEeec-CcCCCCHH--HHHHHHHHhhcCCcEEEEEcCCCcccccH--------------
Q 004879 616 KESIRKHLGLSSADARKPLV-GCITR-LVPQKGVH--LIRHAIYRTLELGGQFILLGSSPVPHIQV-------------- 677 (725)
Q Consensus 616 K~aLRk~lGL~~~d~~~plV-~fVGR-L~~qKGvd--lLieA~~~L~~~~iqLVIvG~Gp~~~le~-------------- 677 (725)
+..+.+.+++.. ++|+| +..|- ..+.|.+. ...+.+..+.+.+.++|+.|++.+....+
T Consensus 161 ~~~~~~~~~~~~---~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~ 237 (334)
T TIGR02195 161 QAAALAKFGLDT---ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALLPGELRNLA 237 (334)
T ss_pred HHHHHHHcCCCC---CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhCCcccccCC
Confidence 445567777752 44555 44554 45677665 67777777666678999999865432100
Q ss_pred --------HHHHHhcCeEEEcCCcccchHHHHHHcCCCccccCCCC
Q 004879 678 --------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNNCE 715 (725)
Q Consensus 678 --------~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V~~~~~ 715 (725)
..+++.||++|... +-++=+.-|+|.+.+.+-|.+
T Consensus 238 g~~sL~el~ali~~a~l~I~~D---SGp~HlAaA~~~P~i~lfG~t 280 (334)
T TIGR02195 238 GETSLDEAVDLIALAKAVVTND---SGLMHVAAALNRPLVALYGST 280 (334)
T ss_pred CCCCHHHHHHHHHhCCEEEeeC---CHHHHHHHHcCCCEEEEECCC
Confidence 17888888888763 334445556666655544443
No 342
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=64.13 E-value=1.6e+02 Score=37.18 Aligned_cols=57 Identities=18% Similarity=0.269 Sum_probs=39.3
Q ss_pred hHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhh
Q 004879 102 ERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATK 161 (725)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (725)
..+..=++.|......|++++++....+...+++.|.-- ++-++-..+..-|..+++
T Consensus 314 ~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~---~l~~ee~~~~~rl~~l~~ 370 (1200)
T KOG0964|consen 314 DQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYN---SLVDEEKRLKKRLAKLEQ 370 (1200)
T ss_pred HHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHH---HHHhHHHHHHHHHHHHHH
Confidence 344444566777788889999999888888888777544 466666666665655554
No 343
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=64.03 E-value=1e+02 Score=26.97 Aligned_cols=84 Identities=23% Similarity=0.395 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHH------hhh
Q 004879 147 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEER------LQR 220 (725)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 220 (725)
..++.++..++...+.-.+......+..++++++|.|-. .|..++.. .+.+|+.|+.. -..
T Consensus 14 ~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~-----~i~~~~~~--------~~~~lk~l~~~~~~~~~~~~ 80 (103)
T PF00804_consen 14 EDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTD-----EIKQLFQK--------IKKRLKQLSKDNEDSEGEEP 80 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHH-----HHHHHHHH--------HHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH-----HHHHHHHH--------HHHHHHHHHHHhhhhcccCC
Confidence 333444444444444433443333322356666666643 34444443 34455555554 345
Q ss_pred chHHHHHHHHHHHHHHHHHHHHh
Q 004879 221 SDEEIHSYVQLYQESVKEFQDTL 243 (725)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~ 243 (725)
...+....-..+..+...|++++
T Consensus 81 ~~~~~ri~~nq~~~L~~kf~~~m 103 (103)
T PF00804_consen 81 SSNEVRIRKNQVQALSKKFQEVM 103 (103)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHC
Confidence 56666666677777788888764
No 344
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=63.96 E-value=1.8e+02 Score=29.96 Aligned_cols=38 Identities=16% Similarity=0.408 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHH-HHHHHHHhhh
Q 004879 208 QQKMKLLEERLQRSDEEIHSYVQLYQES-VKEFQDTLHS 245 (725)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 245 (725)
++++...+.+++...+.+..=|..+... +.+|.++|..
T Consensus 156 e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~ 194 (216)
T cd07627 156 ERRASELKKEFEEVSELIKSELERFERERVEDFRNSVEI 194 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555555433 5555555555
No 345
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=63.34 E-value=1.9e+02 Score=31.28 Aligned_cols=61 Identities=15% Similarity=0.310 Sum_probs=45.5
Q ss_pred hhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHH
Q 004879 170 LQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQL 231 (725)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (725)
+..=+.+|++++..++.+....+.=+.....|+.+.-+.+.++.+.. ++.++..++.+|+.
T Consensus 80 ~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~-v~~~~~~l~~ll~~ 140 (291)
T PF10475_consen 80 LVICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKT-VQQTQSRLQELLEE 140 (291)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhc
Confidence 34446678888888888877777777777777777777778888877 88888888777753
No 346
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=63.14 E-value=1.7e+02 Score=29.22 Aligned_cols=40 Identities=10% Similarity=0.336 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHH-HHHHHHHhhhh
Q 004879 207 MQQKMKLLEERLQRSDEEIHSYVQLYQES-VKEFQDTLHSL 246 (725)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 246 (725)
.++++..++.+++.....+..-+..+... +.+|..+|..+
T Consensus 157 ~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l~~~ 197 (218)
T cd07596 157 AESALEEARKRYEEISERLKEELKRFHEERARDLKAALKEF 197 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666665555555543 55566655553
No 347
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=63.05 E-value=3.6e+02 Score=33.06 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=14.7
Q ss_pred hccccchhhhhhHHHHHHHHH
Q 004879 133 AKLSTLKVECKDLYEKVENLQ 153 (725)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~ 153 (725)
..++.+..+|-++|+....++
T Consensus 314 ~~~e~l~~~~~~~~~~~~~~~ 334 (698)
T KOG0978|consen 314 RDLESLLDKIQDLISQEAELS 334 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345567777888887777766
No 348
>PF13166 AAA_13: AAA domain
Probab=62.90 E-value=3.4e+02 Score=32.76 Aligned_cols=8 Identities=38% Similarity=0.476 Sum_probs=4.7
Q ss_pred EEEECCCc
Q 004879 464 IIHCHDWQ 471 (725)
Q Consensus 464 IIH~Hdw~ 471 (725)
||-+|+++
T Consensus 565 iIlTHn~~ 572 (712)
T PF13166_consen 565 IILTHNLY 572 (712)
T ss_pred EEEeCcHH
Confidence 55566653
No 349
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=62.58 E-value=3.6e+02 Score=32.90 Aligned_cols=32 Identities=25% Similarity=0.232 Sum_probs=22.4
Q ss_pred hccccchhhhhhHHHHHHHHHHHHHHHhhhhh
Q 004879 133 AKLSTLKVECKDLYEKVENLQGLLAKATKQAD 164 (725)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (725)
+.++.++-+|+..=+++..+-..+.+-.++-+
T Consensus 165 ss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~ 196 (716)
T KOG4593|consen 165 SSLSELQWEVMLQEMRAKRLHSELQNEEKELD 196 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888888877777766655544
No 350
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=62.47 E-value=4.5e+02 Score=34.84 Aligned_cols=9 Identities=11% Similarity=0.327 Sum_probs=6.4
Q ss_pred CcEEEEEcC
Q 004879 661 GGQFILLGS 669 (725)
Q Consensus 661 ~iqLVIvG~ 669 (725)
+.++|++..
T Consensus 1306 ~~~~i~~s~ 1314 (1353)
T TIGR02680 1306 DLDFVMTSE 1314 (1353)
T ss_pred CCCEEEEcc
Confidence 677777765
No 351
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=62.12 E-value=1e+02 Score=34.23 Aligned_cols=61 Identities=13% Similarity=-0.028 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHhhcC-CcEEEEEcCCCccc---c----cH------------H---HHHHhcCeEEEcCCcccchHHHH
Q 004879 645 KGVHLIRHAIYRTLEL-GGQFILLGSSPVPH---I----QV------------Y---PILLSSFSFLRKHIFNICNLYIK 701 (725)
Q Consensus 645 KGvdlLieA~~~L~~~-~iqLVIvG~Gp~~~---l----e~------------~---~iyAaADIfVlPS~~EpfGLv~L 701 (725)
.....+.+++..+.+. ++++|+.....++. + ++ . .+++.|+++|-=| | .+.
T Consensus 197 ~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l~~~~~v~~~~~l~~~~~l~ll~~a~~vvgdS-----s-GI~ 270 (346)
T PF02350_consen 197 ERLEQILEALKALAERQNVPVIFPLHNNPRGSDIIIEKLKKYDNVRLIEPLGYEEYLSLLKNADLVVGDS-----S-GIQ 270 (346)
T ss_dssp --HHHHHHHHHHHHHHTTEEEEEE--S-HHHHHHHHHHHTT-TTEEEE----HHHHHHHHHHESEEEESS-----H-HHH
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHhcccCCEEEECCCCHHHHHHHHhcceEEEEcC-----c-cHH
Confidence 4466777777777664 88998877632220 1 10 0 6778888887654 4 455
Q ss_pred -HHcCCCcccc
Q 004879 702 -LGQGGDLTVN 711 (725)
Q Consensus 702 -EAMg~~~~V~ 711 (725)
||..++.||+
T Consensus 271 eEa~~lg~P~v 281 (346)
T PF02350_consen 271 EEAPSLGKPVV 281 (346)
T ss_dssp HHGGGGT--EE
T ss_pred HHHHHhCCeEE
Confidence 8875555543
No 352
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=61.90 E-value=2.8e+02 Score=31.40 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=14.3
Q ss_pred HHHHHhhhhhHHhhHHHHHhhhhcchh
Q 004879 104 VVMLEMERSSLESSLKELESKLSISQE 130 (725)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (725)
..-|+.+-..++..|.+.|.++...+.
T Consensus 173 ~~fl~~ql~~~~~~l~~ae~~l~~fr~ 199 (444)
T TIGR03017 173 ALWFVQQIAALREDLARAQSKLSAYQQ 199 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555444
No 353
>PF14644 DUF4456: Domain of unknown function (DUF4456)
Probab=61.63 E-value=1.5e+02 Score=30.63 Aligned_cols=42 Identities=36% Similarity=0.372 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhh
Q 004879 147 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEA 190 (725)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (725)
+-+++++..+..--+|+++. .-+-=++||.+|..+++.+...
T Consensus 29 ~~~d~~~~~l~~~~~qa~~y--~~~~~~elR~qv~~l~~~l~~v 70 (208)
T PF14644_consen 29 QCADNLVQKLQSYQEQADEY--HNSCLQELRNQVERLEELLPKV 70 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666677766 4555678888888888877543
No 354
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=61.59 E-value=1.3e+02 Score=33.00 Aligned_cols=12 Identities=8% Similarity=0.055 Sum_probs=7.8
Q ss_pred HCCCeEEEEeeC
Q 004879 364 KKGHLVEIVLPK 375 (725)
Q Consensus 364 ~~GHeV~VItP~ 375 (725)
+.|..|.|....
T Consensus 260 ~~Gq~v~i~~~~ 271 (346)
T PRK10476 260 RVGDCATVYSMI 271 (346)
T ss_pred CCCCEEEEEEec
Confidence 467777776543
No 355
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=60.82 E-value=3.1e+02 Score=31.56 Aligned_cols=117 Identities=23% Similarity=0.281 Sum_probs=53.6
Q ss_pred hhhHhhhhhhhhhccchhH-HHHHHHHhhhhhhhhhHHHH------------HHhhhhh---HHhhHHHHHhhhhcchhh
Q 004879 68 SFSKELDSLKTENLSLKND-IKVLKAELNSVKDADERVVM------------LEMERSS---LESSLKELESKLSISQED 131 (725)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------------~~~~~~~---~~~~~~~~~~~~~~~~~~ 131 (725)
++..+.+..|..+.++|++ ++++|-....+.++.+.+.. +++=+-. ..++..+|+.|-..-++-
T Consensus 198 ~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ek 277 (446)
T KOG4438|consen 198 SLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEK 277 (446)
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4566777777777776654 35555555544444432211 1110000 223344444444444433
Q ss_pred hhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHh
Q 004879 132 VAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLD 188 (725)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (725)
|.-+.+++-|-+++..++.....- -+.-+.++..+.+|+.|.++....+.-++
T Consensus 278 v~~~qti~~e~~~~lk~i~~~~~e----~d~~Et~~v~lke~~~Le~q~e~~~~e~~ 330 (446)
T KOG4438|consen 278 VTNLQTIEKELKALLKKISSDGVE----YDSLETKVVELKEILELEDQIELNQLELE 330 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333332222111 13345566667777777776654444343
No 356
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=60.53 E-value=2.6e+02 Score=30.56 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=28.1
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCC
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCM 379 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l 379 (725)
|||..|+.. .-|....+-+|++.|.+ .++++..-.|.++
T Consensus 1 ~ki~aisD~------RtGnt~QaiaLa~~l~r--~eyttk~l~~~~l 39 (329)
T COG3660 1 MKIWAISDG------RTGNTHQAIALAEQLTR--SEYTTKLLEYNNL 39 (329)
T ss_pred CceEEeecC------CCccHHHHHHHHHHhhc--cceEEEEeecccc
Confidence 788888873 35666777888888876 5777777666654
No 357
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=60.46 E-value=2.3e+02 Score=29.92 Aligned_cols=19 Identities=42% Similarity=0.569 Sum_probs=7.8
Q ss_pred hHhhhhhhhhhccchhHHH
Q 004879 70 SKELDSLKTENLSLKNDIK 88 (725)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~ 88 (725)
-.++..++++|..|+..|+
T Consensus 26 ~~~l~~~~~~~~~l~~~i~ 44 (302)
T PF10186_consen 26 RSELQQLKEENEELRRRIE 44 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 358
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=60.37 E-value=1.8e+02 Score=32.20 Aligned_cols=89 Identities=20% Similarity=0.278 Sum_probs=53.7
Q ss_pred hhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhh-h---HH
Q 004879 100 ADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQ-N---QE 175 (725)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~ 175 (725)
+.+.+.-++++-..++..|++.|.++...|..-.-+++ ..+-...-+-+..|+..+..+..+..+.-..... | +.
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~-~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~ 246 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDP-KAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPS 246 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHH
Confidence 44555566666666677777777777666664433333 2223345566777887777777666655444444 3 34
Q ss_pred HHHHHHHHHHhHhh
Q 004879 176 LRKKVDKLEESLDE 189 (725)
Q Consensus 176 ~~~~~~~~~~~~~~ 189 (725)
++.+++.|++.+.+
T Consensus 247 l~~~i~~l~~~i~~ 260 (362)
T TIGR01010 247 LQARIKSLRKQIDE 260 (362)
T ss_pred HHHHHHHHHHHHHH
Confidence 56677777776654
No 359
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=60.27 E-value=11 Score=34.94 Aligned_cols=27 Identities=37% Similarity=0.689 Sum_probs=19.5
Q ss_pred CcHHHH--HHHHHHHHHHCCCeEEEEeeC
Q 004879 349 GGLGDV--VAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 349 GGlg~v--V~~LaraL~~~GHeV~VItP~ 375 (725)
|.-|.+ ...|+++|+++||+|.+.++.
T Consensus 7 Gt~Ghv~P~lala~~L~~rGh~V~~~~~~ 35 (139)
T PF03033_consen 7 GTRGHVYPFLALARALRRRGHEVRLATPP 35 (139)
T ss_dssp SSHHHHHHHHHHHHHHHHTT-EEEEEETG
T ss_pred CChhHHHHHHHHHHHHhccCCeEEEeecc
Confidence 334444 446899999999999988865
No 360
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=59.85 E-value=4.2e+02 Score=32.80 Aligned_cols=34 Identities=21% Similarity=0.504 Sum_probs=28.7
Q ss_pred hhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhh
Q 004879 69 FSKELDSLKTENLSLKNDIKVLKAELNSVKDADE 102 (725)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (725)
....+.-||.||..|+.-+..|-++|.+...+.+
T Consensus 385 IALA~QplrsENaqLrRrLrilnqqlreqe~~~k 418 (861)
T PF15254_consen 385 IALAMQPLRSENAQLRRRLRILNQQLREQEKAEK 418 (861)
T ss_pred hHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcc
Confidence 4667899999999999999999999988666553
No 361
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=59.59 E-value=2e+02 Score=33.46 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=10.6
Q ss_pred cEEEEeCHHHHHHHHh
Q 004879 547 NIVTTVSPSYAQEVRT 562 (725)
Q Consensus 547 D~VitVS~~~a~ev~~ 562 (725)
..|+.|||+..-.++.
T Consensus 324 ~nVvlvsPttL~a~L~ 339 (448)
T COG1322 324 KNVVLVSPTTLMALLN 339 (448)
T ss_pred CCEEEechHHHHHHHH
Confidence 4688888886554443
No 362
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=59.05 E-value=56 Score=34.28 Aligned_cols=89 Identities=33% Similarity=0.442 Sum_probs=48.3
Q ss_pred hhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHH
Q 004879 79 ENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAK 158 (725)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (725)
|-|-||.|.+.+|.+|.+. .+|...|-..+.+||+++.+-|+-. ..|..| -..|...+++
T Consensus 129 ~~~d~ke~~ee~kekl~E~----------~~EkeeL~~eleele~e~ee~~erl---k~le~E-------~s~LeE~~~~ 188 (290)
T COG4026 129 EYMDLKEDYEELKEKLEEL----------QKEKEELLKELEELEAEYEEVQERL---KRLEVE-------NSRLEEMLKK 188 (290)
T ss_pred hhhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-------HHHHHHHHHh
Confidence 5567777777777776543 3444445556666666665555432 222332 1122233333
Q ss_pred HhhhhhhHHHHhhhhHHHHHHHHHHHHh---HhhhhhHHHhH
Q 004879 159 ATKQADQAISVLQQNQELRKKVDKLEES---LDEANIYKLSS 197 (725)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 197 (725)
..+..-+|+++.|.|+.- +++--|.++-+
T Consensus 189 ----------l~~ev~~L~~r~~ELe~~~El~e~~~i~dl~~ 220 (290)
T COG4026 189 ----------LPGEVYDLKKRWDELEPGVELPEEELISDLVK 220 (290)
T ss_pred ----------chhHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 344566788888888754 44444544444
No 363
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=58.89 E-value=2e+02 Score=33.12 Aligned_cols=81 Identities=28% Similarity=0.425 Sum_probs=25.4
Q ss_pred ccchhhHhhhhhhhh----hccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchh
Q 004879 65 EIHSFSKELDSLKTE----NLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKV 140 (725)
Q Consensus 65 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (725)
.+.+|-.||.+||.= ....+.+|..++.++..++...-. ..--..|+.++++-+.|. .
T Consensus 152 Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~-~~~~~~R~~~~~~k~~L~-----------------~ 213 (424)
T PF03915_consen 152 EVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTN-ASGDSNRAYMESGKKKLS-----------------E 213 (424)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHH-----------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccccchhHHHHHHHHHHH-----------------H
Confidence 455555555555532 223456677777777776662211 113356777777666554 3
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhh
Q 004879 141 ECKDLYEKVENLQGLLAKATKQA 163 (725)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~ 163 (725)
+|..|-.+|+.||++.+...+-+
T Consensus 214 ~sd~Ll~kVdDLQD~VE~LRkDV 236 (424)
T PF03915_consen 214 ESDRLLTKVDDLQDLVEDLRKDV 236 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677788888888877766654
No 364
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=57.97 E-value=64 Score=35.69 Aligned_cols=173 Identities=20% Similarity=0.260 Sum_probs=96.1
Q ss_pred hhhhhhhHHHhHHHHHHHHHHHhhc-------ccCcccchhhhhccCCCccchhcccCcccchhhHhhhhhhhhhccchh
Q 004879 13 AAQEKIHVELLEDQLQKLQHELTHR-------GVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKN 85 (725)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (725)
.-+|+-..-++-+||..-.+.|..+ ....+...--+..++.++..-+.........|..|+..||..=..++-
T Consensus 21 cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qG 100 (319)
T PF09789_consen 21 CQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQG 100 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555556666666544444433 111111111112223333333333444556778888888888778888
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHH--hhhhhHHhhHHHHHhhhhcchhhhhccc----cchhhhhhHHHHHHHHHHHHHHH
Q 004879 86 DIKVLKAELNSVKDADERVVMLE--MERSSLESSLKELESKLSISQEDVAKLS----TLKVECKDLYEKVENLQGLLAKA 159 (725)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 159 (725)
||..|+..+....-.++.+..-. .||+.|=..|..+.++...-+.|+--+- -+..|=...-.||+.|..-|.-+
T Consensus 101 D~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~ 180 (319)
T PF09789_consen 101 DIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYI 180 (319)
T ss_pred hHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877654443332222 6666666666666666655555554332 33344445678888888777665
Q ss_pred hhhhhhHH----HHhhhhHHHHHHHHHHHH
Q 004879 160 TKQADQAI----SVLQQNQELRKKVDKLEE 185 (725)
Q Consensus 160 ~~~~~~~~----~~~~~~~~~~~~~~~~~~ 185 (725)
.+-.+.-| .++-.|.-|+.++-.+++
T Consensus 181 L~g~~~rivDIDaLi~ENRyL~erl~q~qe 210 (319)
T PF09789_consen 181 LNGDENRIVDIDALIMENRYLKERLKQLQE 210 (319)
T ss_pred hCCCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 55443321 255667777777666654
No 365
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=57.89 E-value=2.8e+02 Score=36.23 Aligned_cols=51 Identities=22% Similarity=0.257 Sum_probs=22.9
Q ss_pred HHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhh
Q 004879 114 LESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQAD 164 (725)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (725)
.+..+.++.+++-.+-.++-.+.-++.|=....++...+...+.++.+-..
T Consensus 800 ~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~ 850 (1294)
T KOG0962|consen 800 REKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVI 850 (1294)
T ss_pred HHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444333334444444444444444555555555555444433
No 366
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=57.58 E-value=35 Score=33.78 Aligned_cols=106 Identities=29% Similarity=0.414 Sum_probs=60.3
Q ss_pred hhhhhccCCCccchhcccCc--cc--chhhHhhhhhhhhhccc---------------------hhHHHHHHHHhhhhhh
Q 004879 45 LDVFANQNEPANEDLVLNNS--EI--HSFSKELDSLKTENLSL---------------------KNDIKVLKAELNSVKD 99 (725)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~ 99 (725)
.+.+..+|-|.+.+.+..|- .| -...+-|+.|-+++... .+++..|..+ +.+
T Consensus 7 l~y~~~qNRPys~~di~~nL~~~~~K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~e---i~~ 83 (169)
T PF07106_consen 7 LEYMKEQNRPYSAQDIFDNLHNKVGKTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAE---IKE 83 (169)
T ss_pred HHHHHHcCCCCcHHHHHHHHHhhccHHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHH---HHH
Confidence 34455666676554443321 11 23455666666665432 2233334333 444
Q ss_pred hhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHH
Q 004879 100 ADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQG 154 (725)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (725)
..+.+..|+++.+.|++.|+.|.+.++..+- ...+..|+.||..+-++++.|+.
T Consensus 84 L~~el~~l~~~~k~l~~eL~~L~~~~t~~el-~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 84 LREELAELKKEVKSLEAELASLSSEPTNEEL-REEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566667777777777777777777765542 34455666677777777666664
No 367
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=57.52 E-value=5.2e+02 Score=33.15 Aligned_cols=120 Identities=18% Similarity=0.346 Sum_probs=78.1
Q ss_pred HHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHH----HHH
Q 004879 106 MLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRK----KVD 181 (725)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 181 (725)
...++|..++..+.-||.++.--+. +..+-...-|-..|++++.-+++..++.+-+...+....++++ +++
T Consensus 778 ~~a~k~~ef~~q~~~l~~~l~fe~~-----~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~~~~e~k~k~~~~ 852 (1141)
T KOG0018|consen 778 EFAKKRLEFENQKAKLENQLDFEKQ-----KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEIEELEKKNKSKFE 852 (1141)
T ss_pred HHHHHHHHHHHHHHHHhhhhhheec-----ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3445666677777777777765443 4444444478888999999999988888777777766655554 233
Q ss_pred HHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q 004879 182 KLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQ 233 (725)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (725)
+.+.-+ ..+-+.+..+.-++..| ++.+.++|..+.+...|.+.+|..-.
T Consensus 853 ~~~~e~--~e~~k~~~~~~~~~tkl-~~~i~~~es~ie~~~~er~~lL~~ck 901 (1141)
T KOG0018|consen 853 KKEDEI--NEVKKILRRLVKELTKL-DKEITSIESKIERKESERHNLLSKCK 901 (1141)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHH-hhhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 333322 22334444444444444 45678899999999999999887543
No 368
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=57.43 E-value=1.8e+02 Score=27.74 Aligned_cols=118 Identities=18% Similarity=0.288 Sum_probs=51.7
Q ss_pred HHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHH----HHHHHHhhhhhhHHHHhhhhHHHHHHHH
Q 004879 106 MLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQ----GLLAKATKQADQAISVLQQNQELRKKVD 181 (725)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (725)
.|+.|-..+.....+.+.++...+.|+-....+--+|..=|+.==.+. ..|..+..+..+ +=.+-..|+.+++
T Consensus 7 ~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~---~~~~~~~l~~~~~ 83 (132)
T PF07926_consen 7 SLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQE---LQQEINELKAEAE 83 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 344444455555556666666666665555544444333333100000 011111111111 1122334444555
Q ss_pred HHHHhHhhhhh-HHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q 004879 182 KLEESLDEANI-YKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQ 233 (725)
Q Consensus 182 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (725)
..+..|+.... |+--. ..+...+..++.|++.++..+..+.+-++
T Consensus 84 ~a~~~l~~~e~sw~~qk-------~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 84 SAKAELEESEASWEEQK-------EQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55554443322 22222 24555566666666666666666555443
No 369
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=57.41 E-value=73 Score=35.04 Aligned_cols=72 Identities=24% Similarity=0.297 Sum_probs=41.3
Q ss_pred HHHhHHHHHHHHHHHhhcc----cCcccchhhhhccCCCccchhcccCcccchhhHhhhhhhhhhccchhHHHHHHHHhh
Q 004879 20 VELLEDQLQKLQHELTHRG----VSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELN 95 (725)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (725)
+..||++-..||.|-++-. .-|.....+ +++ ....+..-|..|-.|++||..-.+||+...+.|..|-+++.
T Consensus 169 lk~LEeEN~~LR~Ea~~L~~et~~~EekEqqL-v~d---cv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqiv 244 (306)
T PF04849_consen 169 LKSLEEENEQLRSEASQLKTETDTYEEKEQQL-VLD---CVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIV 244 (306)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHhhccHHHHHH-HHH---HHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468888889998877643 122222111 111 11223344566667777777777777777777766665543
No 370
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.05 E-value=2.7e+02 Score=34.58 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=19.9
Q ss_pred CCcHHHHHHHHHHHHHHCCCeEEE
Q 004879 348 VGGLGDVVAGLGKALQKKGHLVEI 371 (725)
Q Consensus 348 vGGlg~vV~~LaraL~~~GHeV~V 371 (725)
-|-....+..|.+++...||.|+=
T Consensus 920 ~~~~~~~i~alk~~l~dL~q~~ee 943 (970)
T KOG0946|consen 920 LADQKEKIQALKEALEDLNQPVEE 943 (970)
T ss_pred HhhHHHHHHHHHHHHHHhCCChhh
Confidence 366788899999999999998843
No 371
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=56.95 E-value=44 Score=40.17 Aligned_cols=86 Identities=17% Similarity=0.261 Sum_probs=51.6
Q ss_pred HhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhhhHHhhhhhccCCCCCCCChHHHHHHHHHHhhhhhc
Q 004879 201 QQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLE 280 (725)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~d~~~~~ 280 (725)
++....+++|+..+++.++..++++..+.+.+.....+..+.|.. +.++... ..++...=+..+++
T Consensus 214 ~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~---~~~~~~~-----------~~~~~~t~~~~~l~ 279 (646)
T PRK05771 214 SELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEI---ELERAEA-----------LSKFLKTDKTFAIE 279 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-----------HHhhhcCCcEEEEE
Confidence 345566778888888888889999998888887776655444443 3332211 11221111233445
Q ss_pred ccCChHHHHHHHHHHHhhcC
Q 004879 281 KKLSTSEAKLLREMVWKRNG 300 (725)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~ 300 (725)
|-+..++...+++.+.+...
T Consensus 280 GWvP~~~~~~l~~~l~~~~~ 299 (646)
T PRK05771 280 GWVPEDRVKKLKELIDKATG 299 (646)
T ss_pred EEeehhHHHHHHHHHHHhcC
Confidence 55666677788887765543
No 372
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=56.66 E-value=1.3e+02 Score=30.67 Aligned_cols=103 Identities=25% Similarity=0.340 Sum_probs=0.0
Q ss_pred hhhhhhHHHhHHHHHHHHHHHhhcccCcccchhhhhccCCCccchhcccCcccchhhHhhhhhhhhhccchhH----HHH
Q 004879 14 AQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKND----IKV 89 (725)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 89 (725)
.....|.-+||.||+-.|+-+.+. ..|=+.+-+...+|.+. ...
T Consensus 67 ~aAEtRCslLEKQLeyMRkmv~~a--------------------------------e~er~~~le~q~~l~~e~~~~~~~ 114 (178)
T PF14073_consen 67 SAAETRCSLLEKQLEYMRKMVESA--------------------------------EKERNAVLEQQVSLQRERQQDQSE 114 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------------------------HHhhhHHHHHHHHHHHHhccchhh
Q ss_pred HHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHH
Q 004879 90 LKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAK 158 (725)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (725)
+++++....--+..-..|-.--+.-+..+++||.||..-+ -..|-+.||.+.||--|+.
T Consensus 115 ~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEe----------hqRKlvQdkAaqLQt~lE~ 173 (178)
T PF14073_consen 115 LQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEE----------HQRKLVQDKAAQLQTGLET 173 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhhHHH
No 373
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=56.62 E-value=2.4e+02 Score=35.71 Aligned_cols=195 Identities=18% Similarity=0.214 Sum_probs=0.0
Q ss_pred hhhHHHhHHHHHHHHHHHhhcccCcccchhhhhccCCCccchhcccCcccchhhHhhhhhhhhhccchhHHHHHHHHhhh
Q 004879 17 KIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNS 96 (725)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (725)
+-.++-++..+|.+|......+-.|--+...-.-.-... ..|++.+|..--.+|.++..+..+...
T Consensus 208 ~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~--------------~~ey~~~k~~~~r~k~~~r~l~k~~~p 273 (1072)
T KOG0979|consen 208 EDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKH--------------DREYNAYKQAKDRAKKELRKLEKEIKP 273 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhh--------------hHHHHHHHHHHHHHHHHHHHHHHhhhh
Q ss_pred hhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHH
Q 004879 97 VKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQEL 176 (725)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (725)
+.++-+ .||.|++.+.+..+.+-.-+..+.+.+-+...---+ .=++|+.++.-|..+.+++++ ....-+..
T Consensus 274 i~~~~e---eLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~---~~~~v~~~~~~le~lk~~~~~---rq~~i~~~ 344 (1072)
T KOG0979|consen 274 IEDKKE---ELESEKKETRSKISQKQRELNEALAKVQEKFEKLKE---IEDEVEEKKNKLESLKKAAEK---RQKRIEKA 344 (1072)
T ss_pred hhhhhh---hHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q ss_pred HHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q 004879 177 RKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVK 237 (725)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (725)
++-++.+++-|.+..+.+-.-+..| +++.+.+..=.+-+..++.+|..-=.+.+..+.
T Consensus 345 ~k~i~~~q~el~~~~~~e~~~~~~~---ei~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~ 402 (1072)
T KOG0979|consen 345 KKMILDAQAELQETEDPENPVEEDQ---EIMKEVLQKKSSKLRDSRQEIDAEQLKSQKLRD 402 (1072)
T ss_pred HHHHHHHHhhhhhcCCccccchhHH---HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHH
No 374
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=56.56 E-value=2.5e+02 Score=29.18 Aligned_cols=20 Identities=30% Similarity=0.549 Sum_probs=16.4
Q ss_pred hHHHhHHHHHHHHHHHhhcc
Q 004879 19 HVELLEDQLQKLQHELTHRG 38 (725)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~ 38 (725)
-+-||-.||.....|+++++
T Consensus 11 EIsLLKqQLke~q~E~~~K~ 30 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKD 30 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 36788899999999998873
No 375
>PRK10884 SH3 domain-containing protein; Provisional
Probab=56.20 E-value=1.3e+02 Score=31.25 Aligned_cols=9 Identities=11% Similarity=0.028 Sum_probs=3.8
Q ss_pred hhhhHHhhh
Q 004879 243 LHSLKEESK 251 (725)
Q Consensus 243 ~~~~~~~~~ 251 (725)
++.++.+..
T Consensus 162 ~~~~~~~~~ 170 (206)
T PRK10884 162 LDDKQRTII 170 (206)
T ss_pred HHHHHHHHH
Confidence 333444444
No 376
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=56.09 E-value=93 Score=36.14 Aligned_cols=66 Identities=21% Similarity=0.346 Sum_probs=31.6
Q ss_pred HhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhhhH
Q 004879 169 VLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLK 247 (725)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (725)
++.+|..|+++-++|.+- + +++.+..++.+..-..++++-.++.++.++.-+..+...+..|+.+.
T Consensus 78 l~~~N~~l~~eN~~L~~r--~-----------~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~~ 143 (472)
T TIGR03752 78 LISENEALKAENERLQKR--E-----------QSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGVL 143 (472)
T ss_pred HHHHHHHHHHHHHHHHHh--h-----------hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 567788887777766432 2 23334444444443333333333333333334444444455554433
No 377
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=55.53 E-value=4.3e+02 Score=31.56 Aligned_cols=73 Identities=21% Similarity=0.315 Sum_probs=59.2
Q ss_pred cccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccc
Q 004879 64 SEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLS 136 (725)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (725)
+.+.-+..|+..-.+|+-.|+.....||.++..+.=+.+-+...-.||..|+..|.++++++..-+.-++++.
T Consensus 294 ~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~ 366 (581)
T KOG0995|consen 294 KKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELK 366 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3455677777777888888888888888888888888888888888999999999999988887777666654
No 378
>PRK10698 phage shock protein PspA; Provisional
Probab=54.95 E-value=2.7e+02 Score=29.08 Aligned_cols=96 Identities=13% Similarity=0.175 Sum_probs=45.8
Q ss_pred HHHhhhhhHHhhHHHHHhhhhc----chhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHH
Q 004879 106 MLEMERSSLESSLKELESKLSI----SQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVD 181 (725)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (725)
.++++...+++...+.|.+-.. -++|.++---.+. +..-++++.|+..++....++++ +-++-+.|+.|+.
T Consensus 56 ~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K--~~~~~~~~~l~~~~~~~~~~~~~---L~~~l~~L~~ki~ 130 (222)
T PRK10698 56 QLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEK--QKLTDLIATLEHEVTLVDETLAR---MKKEIGELENKLS 130 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 4566666777777777776433 3455443211111 12345666666666664444333 2233344444444
Q ss_pred HHHHhHhhhhhHHHhHHHHHhHHHH
Q 004879 182 KLEESLDEANIYKLSSEKMQQYNEL 206 (725)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (725)
+.+.--..-....-.-+++++++..
T Consensus 131 eak~k~~~L~aR~~~A~a~~~~~~~ 155 (222)
T PRK10698 131 ETRARQQALMLRHQAASSSRDVRRQ 155 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333333333344444444433
No 379
>COG4550 Predicted membrane protein [Function unknown]
Probab=54.93 E-value=1.6e+02 Score=27.83 Aligned_cols=71 Identities=21% Similarity=0.337 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHH-----hhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhh
Q 004879 145 LYEKVENLQGLLAKA-----TKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQ 219 (725)
Q Consensus 145 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (725)
.-.++.+|...+..+ -+||+. -+-+||.+..+|++++..=+++.-++-. --++-++..|.+.+
T Consensus 7 i~~~a~~la~~ik~teeV~~fq~aE~---qin~n~~v~~~~~~iK~lQKeAVn~q~y---------~K~eAlkqses~i~ 74 (120)
T COG4550 7 ILKQADNLANKIKETEEVKFFQQAEA---QINANQKVKTKVDEIKKLQKEAVNLQHY---------DKEEALKQSESKID 74 (120)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHHhhHHHHHh---------hHHHHHHHHHHHHH
Confidence 444555555554432 234444 4678999999999999888877654322 22333444555555
Q ss_pred hchHHHHH
Q 004879 220 RSDEEIHS 227 (725)
Q Consensus 220 ~~~~~~~~ 227 (725)
...++|.+
T Consensus 75 ~le~ei~~ 82 (120)
T COG4550 75 ELEAEIDH 82 (120)
T ss_pred HHHHHHhc
Confidence 55555554
No 380
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=54.89 E-value=69 Score=32.35 Aligned_cols=79 Identities=24% Similarity=0.302 Sum_probs=51.7
Q ss_pred HHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHH
Q 004879 103 RVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDK 182 (725)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (725)
.+..|.+++|..++.|++|-|-|+.-+- --++..|+-||+..-++++++.+-..-.|...-.+ |-...|+-.+.-.|
T Consensus 94 k~q~l~~t~s~veaEik~L~s~Lt~eem-Qe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~--v~~~y~~~~~~wrk 170 (201)
T KOG4603|consen 94 KVQSLQQTCSYVEAEIKELSSALTTEEM-QEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQ--VYREYQKYCKEWRK 170 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHH
Confidence 4455667788899999999998875321 12345678899999999999887655555544444 44455554444444
Q ss_pred HH
Q 004879 183 LE 184 (725)
Q Consensus 183 ~~ 184 (725)
.+
T Consensus 171 ~k 172 (201)
T KOG4603|consen 171 RK 172 (201)
T ss_pred HH
Confidence 33
No 381
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=54.75 E-value=60 Score=30.56 Aligned_cols=71 Identities=35% Similarity=0.444 Sum_probs=42.0
Q ss_pred hhhHHhhHHHHHhhhhcchhhhhccccchhhh-hhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhh
Q 004879 111 RSSLESSLKELESKLSISQEDVAKLSTLKVEC-KDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDE 189 (725)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (725)
|+.+|-.++||||+|+..+ +-+.|| + -++|.-..+ .+.-|.-+.-|-+|+++-.+-|++
T Consensus 2 rsQmElrIkdLeselsk~K-------tsq~d~~~---~eLEkYkql----------y~eElk~r~SLs~kL~ktnerLae 61 (111)
T PF12001_consen 2 RSQMELRIKDLESELSKMK-------TSQEDSNK---TELEKYKQL----------YLEELKLRKSLSNKLNKTNERLAE 61 (111)
T ss_pred chHHHHHHHHHHHHHHHhH-------hHhhhhhH---HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888999999886432 222332 1 122222222 222455566677888888888888
Q ss_pred hhhHHHhHHHHHh
Q 004879 190 ANIYKLSSEKMQQ 202 (725)
Q Consensus 190 ~~~~~~~~~~~~~ 202 (725)
++ .||.-|++|+
T Consensus 62 vs-tkLl~Ekeq~ 73 (111)
T PF12001_consen 62 VS-TKLLVEKEQN 73 (111)
T ss_pred Hh-hHHHHHHHhc
Confidence 76 4566666553
No 382
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=54.23 E-value=3.9e+02 Score=34.22 Aligned_cols=66 Identities=21% Similarity=0.329 Sum_probs=36.6
Q ss_pred HHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhh
Q 004879 179 KVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHS 245 (725)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (725)
.+++|+.+|...+.-+--.+.+-.+++++-.|-|+-=. +-.++=....++-...++-+.-|+.|.+
T Consensus 1286 ll~~L~~tlD~S~~a~Kqk~di~kl~~~lv~kQKAYP~-M~QlQ~ksealI~qLRelC~~h~~~l~k 1351 (1439)
T PF12252_consen 1286 LLDKLEKTLDDSDTAQKQKEDIVKLNDFLVEKQKAYPA-MVQLQFKSEALIIQLRELCEAHQDNLAK 1351 (1439)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhhchH-HHHHhhhhHHHHHHHHHHHHHhhHHHHH
Confidence 36777778877776666666666666666555555444 2222222333444445555555665555
No 383
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=54.15 E-value=45 Score=27.85 Aligned_cols=44 Identities=20% Similarity=0.535 Sum_probs=34.8
Q ss_pred hhhhHHHhHHHHHhHHHHHHHHHHHHHH--HhhhchHHHHHHHHHH
Q 004879 189 EANIYKLSSEKMQQYNELMQQKMKLLEE--RLQRSDEEIHSYVQLY 232 (725)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 232 (725)
....|+-....++.|+..+.+|.+...| +|++-|.|..++|+.|
T Consensus 14 ~~~~W~~L~~~l~rY~~vL~~R~~l~~e~~~L~~qN~eLr~lLkqY 59 (60)
T PF14775_consen 14 KIRLWDALENFLKRYNKVLLDRAALIQEKESLEQQNEELRSLLKQY 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3467888888999999999999999886 4566667777777665
No 384
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=53.69 E-value=1.8e+02 Score=31.68 Aligned_cols=43 Identities=12% Similarity=0.140 Sum_probs=22.3
Q ss_pred HHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhh
Q 004879 177 RKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQ 219 (725)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (725)
++++++.+..++.+.+.+.--+..+.-....+.++...+.++.
T Consensus 127 ~~~~~r~~~L~~~g~vs~~~~~~~~~~~~~a~~~~~~a~~~~~ 169 (331)
T PRK03598 127 QNFYNRQQGLWKSRTISANDLENARSSRDQAQATLKSAQDKLS 169 (331)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555566666665555554444445555555554444
No 385
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=53.57 E-value=1.8e+02 Score=26.56 Aligned_cols=93 Identities=24% Similarity=0.369 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHH
Q 004879 147 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIH 226 (725)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (725)
.+...||.-+...+.+-.+--.-+..|.+..+.+..|+ ....+|+..-.. +.++-..-+.+.|....+.+.
T Consensus 6 ~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~---~d~~vy~~VG~v------fv~~~~~ea~~~Le~~~e~le 76 (105)
T cd00632 6 AQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLA---DDAEVYKLVGNV------LVKQEKEEARTELKERLETIE 76 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CcchHHHHhhhH------HhhccHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333444444444443333 567777766552 333333333333444444444
Q ss_pred HHHHHHHHHHHHHHHHhhhhHH
Q 004879 227 SYVQLYQESVKEFQDTLHSLKE 248 (725)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~ 248 (725)
+-++.+...++..+..+.+++.
T Consensus 77 ~~i~~l~~~~~~l~~~~~elk~ 98 (105)
T cd00632 77 LRIKRLERQEEDLQEKLKELQE 98 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445554444444444443
No 386
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=53.49 E-value=3.4e+02 Score=29.84 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=31.9
Q ss_pred ccchhHHHHHHHHhhhhhhhhhHHHHHHhhh----hhHHhhHHHHHhhhh
Q 004879 81 LSLKNDIKVLKAELNSVKDADERVVMLEMER----SSLESSLKELESKLS 126 (725)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 126 (725)
..++.++..++.-|..-.+.|..+..+=.+. ..|.....+|+.-+-
T Consensus 129 ~~l~~~~~k~~~~L~~A~~sD~~l~~~~~~~~~~l~lL~~~~~~l~~~~P 178 (342)
T cd08915 129 KELYEKVTKLRGYLEQASNSDNEVLQCYESIDPNLVLLCGGYKELKAFIP 178 (342)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCChHHHHHhCC
Confidence 4678888888888888888888877665543 235555566665554
No 387
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=52.99 E-value=3e+02 Score=29.07 Aligned_cols=52 Identities=15% Similarity=0.461 Sum_probs=37.6
Q ss_pred hHHHHhhhhHHHHH-HHHHHHHhHhh--hhhHHHhHHHHHhHHHHHHHHHHHHHH
Q 004879 165 QAISVLQQNQELRK-KVDKLEESLDE--ANIYKLSSEKMQQYNELMQQKMKLLEE 216 (725)
Q Consensus 165 ~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (725)
+.+.-++++||.|. +.|++..+|++ .+.+.-..-.+..+...+|.+++.++.
T Consensus 57 K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~t 111 (230)
T PF03904_consen 57 KYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDVDT 111 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 35566788888765 57889999998 566666666666778888888777653
No 388
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=52.85 E-value=81 Score=36.12 Aligned_cols=142 Identities=14% Similarity=-0.028 Sum_probs=89.2
Q ss_pred hhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHH
Q 004879 538 PLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKE 617 (725)
Q Consensus 538 ~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~ 617 (725)
+.+..+...|.|++=|+-.++...+ .| . .++.+.-| .....+.. +. -.....
T Consensus 170 ~~~~~~~~i~li~aQse~D~~Rf~~--LG--a--------~~v~v~GN---lKfd~~~~-~~------------~~~~~~ 221 (419)
T COG1519 170 LARLLFKNIDLILAQSEEDAQRFRS--LG--A--------KPVVVTGN---LKFDIEPP-PQ------------LAAELA 221 (419)
T ss_pred HHHHHHHhcceeeecCHHHHHHHHh--cC--C--------cceEEecc---eeecCCCC-hh------------hHHHHH
Confidence 4566677889999999888877764 22 1 22333222 11111110 00 012456
Q ss_pred HHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhcC--CcEEEEEcCCCcc--cccH----------------
Q 004879 618 SIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL--GGQFILLGSSPVP--HIQV---------------- 677 (725)
Q Consensus 618 aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~~--~iqLVIvG~Gp~~--~le~---------------- 677 (725)
.+|++++.+ +|++++.+.. ..--..+++++..+.++ |..+|+|=--|++ .+++
T Consensus 222 ~~r~~l~~~-----r~v~iaaSTH--~GEeei~l~~~~~l~~~~~~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~~ 294 (419)
T COG1519 222 ALRRQLGGH-----RPVWVAASTH--EGEEEIILDAHQALKKQFPNLLLILVPRHPERFKAVENLLKRKGLSVTRRSQGD 294 (419)
T ss_pred HHHHhcCCC-----CceEEEecCC--CchHHHHHHHHHHHHhhCCCceEEEecCChhhHHHHHHHHHHcCCeEEeecCCC
Confidence 778887743 5788888773 33345788999888764 6778888665543 1110
Q ss_pred -----------------HHHHHhcCeEEE-cCCcccchHHHHHHcCCCccccCCC
Q 004879 678 -----------------YPILLSSFSFLR-KHIFNICNLYIKLGQGGDLTVNNNC 714 (725)
Q Consensus 678 -----------------~~iyAaADIfVl-PS~~EpfGLv~LEAMg~~~~V~~~~ 714 (725)
..+|+.||+.++ -|+.+-=|=-.+|+...+.+|+.|.
T Consensus 295 ~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN~LEpa~~~~pvi~Gp 349 (419)
T COG1519 295 PPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHNPLEPAAFGTPVIFGP 349 (419)
T ss_pred CCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCChhhHHHcCCCEEeCC
Confidence 089999999777 5666555778999988888887764
No 389
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=52.79 E-value=1e+02 Score=30.24 Aligned_cols=75 Identities=31% Similarity=0.423 Sum_probs=46.4
Q ss_pred HHhhHHHHHhhhhcchhhhhccccchhhhhhH-HHHHHHHHHHHHHHhhhhhhHHHHhh----hhHHHHHHHHHHHHhHh
Q 004879 114 LESSLKELESKLSISQEDVAKLSTLKVECKDL-YEKVENLQGLLAKATKQADQAISVLQ----QNQELRKKVDKLEESLD 188 (725)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 188 (725)
-+++++.|++.+..-.-=+.++..+..|.-.- .+..+.|..+|.++.+=+++...+-. .+....+|+.+||++|.
T Consensus 32 fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~r~n~~kk~~y~~Ki~~le~~l~ 111 (147)
T PF05659_consen 32 FKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKVRRWNLYKKPRYARKIEELEESLR 111 (147)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHhHHHHHHHHHHHHH
Confidence 45556666666655555555555555554444 56677777777777766666544322 34667788888887765
No 390
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=52.73 E-value=1.9e+02 Score=30.13 Aligned_cols=108 Identities=24% Similarity=0.311 Sum_probs=56.7
Q ss_pred hhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHh-hhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHH
Q 004879 76 LKTENLSLKNDIKVLKAELNSVKDADERVVMLEM-ERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQG 154 (725)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (725)
.|+--.++-+||+.+-.+|++..-+...-.+|.. |-- |+.+| |-.|-+..+.
T Consensus 9 trerLL~~~dDlE~i~kelie~l~~~~~qk~l~~gE~v------------------~il~L---------l~~kd~ef~~ 61 (272)
T KOG4552|consen 9 TRERLLESADDLEHIVKELIETLINRDKQKMLKNGETV------------------NILKL---------LDSKDDEFKT 61 (272)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHhcchHH------------------HHHHH---------HHhccHHHHH
Confidence 4454555667888887777776543332222221 100 11111 2334445556
Q ss_pred HHHHHhhhh--hhHHHHhhhhHHHHHH-HHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHH
Q 004879 155 LLAKATKQA--DQAISVLQQNQELRKK-VDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEE 216 (725)
Q Consensus 155 ~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (725)
||..|-+|. +|++.+|..+-+-|+. +.+|+.+|+++..---. -.+.-+||+|.+++
T Consensus 62 llkla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtt------a~fqA~qKLksi~~ 120 (272)
T KOG4552|consen 62 LLKLAPEQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILTT------ACFQANQKLKSIKE 120 (272)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 666665553 4566555555555543 35677777766543211 22566778887776
No 391
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=52.31 E-value=3.2e+02 Score=29.08 Aligned_cols=39 Identities=15% Similarity=0.107 Sum_probs=22.4
Q ss_pred hccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhh
Q 004879 133 AKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQ 171 (725)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (725)
|...|-..-...|+.+++.++..|..|.+--.+....++
T Consensus 70 W~r~~S~~~~~~l~~~l~~~~~~L~~A~~sD~~~~~~~~ 108 (296)
T PF13949_consen 70 WTRPPSSELNASLRKELQKYREYLEQASESDSQLRSKLE 108 (296)
T ss_dssp CGSS-HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCcHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 333333333457888888888888886654444333333
No 392
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=52.21 E-value=2.9e+02 Score=28.60 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=39.8
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhc----chhhhhccccchhhhhhHHHHHHHHHHHHHHHhh
Q 004879 86 DIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSI----SQEDVAKLSTLKVECKDLYEKVENLQGLLAKATK 161 (725)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (725)
+|...|..+..+. -.-..++++...++....++|.+-.. -++|.++---- +-+..-+.++.|+..++....
T Consensus 39 ~l~~ar~~lA~~~---a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~--~k~~~~~~~~~l~~~~~~~~~ 113 (219)
T TIGR02977 39 TLVEVRTTSARTI---ADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALI--EKQKAQELAEALERELAAVEE 113 (219)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 4444444433332 22345677888888888888877443 34554442211 112344556666666666544
Q ss_pred hhhh
Q 004879 162 QADQ 165 (725)
Q Consensus 162 ~~~~ 165 (725)
++++
T Consensus 114 ~v~~ 117 (219)
T TIGR02977 114 TLAK 117 (219)
T ss_pred HHHH
Confidence 4443
No 393
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=51.57 E-value=4e+02 Score=30.09 Aligned_cols=15 Identities=20% Similarity=0.279 Sum_probs=10.3
Q ss_pred HCCCeEEEEeeCCCC
Q 004879 364 KKGHLVEIVLPKYDC 378 (725)
Q Consensus 364 ~~GHeV~VItP~y~~ 378 (725)
+.|-.|.|....|+.
T Consensus 309 ~~G~~v~v~~~~~~~ 323 (421)
T TIGR03794 309 RPGMSVQITPSTVKA 323 (421)
T ss_pred CCCCEEEEEEccccc
Confidence 567788887666553
No 394
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=51.35 E-value=28 Score=37.37 Aligned_cols=109 Identities=13% Similarity=-0.017 Sum_probs=0.0
Q ss_pred chhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcc
Q 004879 439 DDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDV 518 (725)
Q Consensus 439 dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~ 518 (725)
|-+.....+-..+..++...-.+.||+|+++--.+.+..+..+. ..|+|+++|=|+. +.....+....-++
T Consensus 150 d~fw~~r~~~~~l~~ll~~~lP~advyHsvstGyAgl~g~~~k~-----~~g~P~lLTEHGI----Y~RER~~ei~~a~w 220 (268)
T PF11997_consen 150 DYFWTIRSMHLPLFPLLAEPLPKADVYHSVSTGYAGLLGALAKY-----RYGRPFLLTEHGI----YTREREIEILQADW 220 (268)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCCEEecCCccHHHHHHHHHHH-----HhCCCEEEecCCc----cHHHHHHHHHhccc
Q ss_pred cccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHH
Q 004879 519 QQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQ 558 (725)
Q Consensus 519 ~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ 558 (725)
- ..+..+++--..-.-.+.+.++..||.|+++.+.-+.
T Consensus 221 ~--~~~~~~r~~wi~~f~~l~~~~Y~~Ad~I~~l~~~n~~ 258 (268)
T PF11997_consen 221 I--WESPYVRDLWIRFFESLSRLAYRAADRITPLYEYNRE 258 (268)
T ss_pred c--cchHHHHHHHHHHHHHHHHHHHHhhCeecccchhhHH
No 395
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=51.16 E-value=3.8e+02 Score=29.61 Aligned_cols=56 Identities=32% Similarity=0.360 Sum_probs=36.4
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhh-HHhhHHHHHhhh
Q 004879 70 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSS-LESSLKELESKL 125 (725)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 125 (725)
+.-++.|.+|=..|.+++..+.+++.+.+..--..+.--.++.. +..++.+++.++
T Consensus 6 s~~l~~L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l 62 (338)
T PF04124_consen 6 SLSLESLFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSL 62 (338)
T ss_pred cCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888888888888888888877766666655554432 333344444433
No 396
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=50.96 E-value=5.4e+02 Score=31.33 Aligned_cols=38 Identities=18% Similarity=0.186 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhh
Q 004879 205 ELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHS 245 (725)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (725)
.+.+.+|....+ .....-+++.+.++..++.|+....+
T Consensus 435 ~~~~~kl~P~~~---~V~~~s~~l~~~ie~E~~~f~~~~l~ 472 (632)
T PF14817_consen 435 EFVQRKLVPQFE---AVAPQSQELRDCIEREVRAFQAIPLN 472 (632)
T ss_pred HHHhcccCCcHH---HHHHHHHHHHHHHHHHHHhcccccHH
Confidence 444555555444 22344556666777778888766554
No 397
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=50.93 E-value=99 Score=30.25 Aligned_cols=18 Identities=11% Similarity=-0.082 Sum_probs=15.6
Q ss_pred hccEEEEeCHHHHHHHHh
Q 004879 545 FSNIVTTVSPSYAQEVRT 562 (725)
Q Consensus 545 ~AD~VitVS~~~a~ev~~ 562 (725)
.+|..++.|+..++++..
T Consensus 137 ~~D~y~Vase~~~~~l~~ 154 (169)
T PF06925_consen 137 GVDRYFVASEEVKEELIE 154 (169)
T ss_pred CCCEEEECCHHHHHHHHH
Confidence 469999999999998876
No 398
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=50.35 E-value=2.2e+02 Score=26.69 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=13.5
Q ss_pred HhhhhHHHHHHHHHHHHhHhh
Q 004879 169 VLQQNQELRKKVDKLEESLDE 189 (725)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~ 189 (725)
+-+.-.+|+.+|+.+...|+.
T Consensus 56 ~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 56 RNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455777777777766655
No 399
>PF13514 AAA_27: AAA domain
Probab=50.24 E-value=6.8e+02 Score=32.33 Aligned_cols=57 Identities=25% Similarity=0.282 Sum_probs=26.6
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHH
Q 004879 66 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELE 122 (725)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (725)
++.+-.+++.++.+=..........+.....+....+.+..+..|+..+...++.||
T Consensus 152 in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~le 208 (1111)
T PF13514_consen 152 INQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLE 208 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555444444444444444444444444444445555444444444443
No 400
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=50.10 E-value=5.3 Score=49.59 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhh
Q 004879 221 SDEEIHSYVQLYQESVKEFQDTLHS 245 (725)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (725)
.+.+..-.+++|+..+++.|..|+.
T Consensus 568 ~~~e~~k~~kk~q~qlkdlq~~lee 592 (859)
T PF01576_consen 568 ANEEAQKQLKKLQAQLKDLQRELEE 592 (859)
T ss_dssp -------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3445555666666667776666655
No 401
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=50.01 E-value=23 Score=41.35 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=29.2
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCC
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 376 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y 376 (725)
-||+.+.+-+ .+.=-.+...++++|+++||+|+|++|..
T Consensus 21 ~kIl~~~P~~-----~~SH~~~~~~l~~~La~rGH~VTvi~p~~ 59 (507)
T PHA03392 21 ARILAVFPTP-----AYSHHSVFKVYVEALAERGHNVTVIKPTL 59 (507)
T ss_pred ccEEEEcCCC-----CCcHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 4788776532 23335667779999999999999999864
No 402
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=49.97 E-value=30 Score=31.52 Aligned_cols=19 Identities=21% Similarity=0.634 Sum_probs=13.4
Q ss_pred HHHhHHHHHHHHHHHhhcc
Q 004879 20 VELLEDQLQKLQHELTHRG 38 (725)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~ 38 (725)
+.++-+..+..+.-+..|+
T Consensus 4 ik~ir~n~e~v~~~l~~R~ 22 (108)
T PF02403_consen 4 IKLIRENPEEVRENLKKRG 22 (108)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCHHHHHHHHHHcC
Confidence 3455567777888888876
No 403
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=49.85 E-value=6.3e+02 Score=32.52 Aligned_cols=162 Identities=14% Similarity=0.115 Sum_probs=0.0
Q ss_pred hhhhhccchhHHHHHHHHhhhhhhh-hhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHH
Q 004879 76 LKTENLSLKNDIKVLKAELNSVKDA-DERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQG 154 (725)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (725)
+++.+...+..++.++.++..+... ++-...++.+...+....+.+...+...+... .|......|+.
T Consensus 189 l~er~k~~~~~l~~l~~~l~~~~~ls~e~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~ 257 (1047)
T PRK10246 189 VFEQHKSARTELEKLQAQASGVALLTPEQVQSLTASLQVLTDEEKQLLTAQQQQQQSL-----------NWLTRLDELQQ 257 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Q ss_pred HHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHH------HHHHHHHHhhhchHHHHHH
Q 004879 155 LLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQ------KMKLLEERLQRSDEEIHSY 228 (725)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 228 (725)
-+..+..+..++..-.+.-...+.++++++....-...|.-.....+.+.....+ ++....+.+..........
T Consensus 258 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~~e~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 337 (1047)
T PRK10246 258 EASRRQQALQQALAAEEKAQPQLAALSLAQPARQLRPHWERIQEQSAALAHTRQQIEEVNTRLQSTMALRARIRHHAAKQ 337 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhhcchhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhhHH
Q 004879 229 VQLYQESVKEFQDTLHSLKE 248 (725)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~ 248 (725)
+...+..+.+++..+.....
T Consensus 338 ~~~~~~~~~~l~~~l~~~~~ 357 (1047)
T PRK10246 338 SAELQAQQQSLNTWLAEHDR 357 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 404
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=49.83 E-value=60 Score=28.07 Aligned_cols=43 Identities=19% Similarity=0.400 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhh
Q 004879 144 DLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDE 189 (725)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (725)
+|-+-..+||.+++.+.++.. ..-.++..|.++|+.|.+.++.
T Consensus 25 ~Wq~sy~~Lq~~~~~t~~~~a---~L~~qv~~Ls~qv~~Ls~ql~r 67 (70)
T PF04899_consen 25 EWQSSYADLQHMFEQTSQENA---ALSEQVNNLSQQVQRLSEQLER 67 (70)
T ss_pred HHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 588889999999988554432 4667888888888888887764
No 405
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=49.74 E-value=6.4e+02 Score=32.77 Aligned_cols=49 Identities=27% Similarity=0.269 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHH
Q 004879 176 LRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHS 227 (725)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (725)
+..+++.+|..|..++-..--...| .++.++++..+|.+++..++.++.
T Consensus 185 l~~~~~~l~~~l~s~~~~~~L~~~q---~dl~~~~~~~l~~~~~~Lq~~in~ 233 (1109)
T PRK10929 185 LKALVDELELAQLSANNRQELARLR---SELAKKRSQQLDAYLQALRNQLNS 233 (1109)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555443322222222 245667777777777777777766
No 406
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=49.73 E-value=1.1e+02 Score=34.99 Aligned_cols=135 Identities=22% Similarity=0.275 Sum_probs=0.0
Q ss_pred cccchhhhhHHhhhhhhhHH-------HhHHH-HHHHHHHHhhcccCcccchhhhhccCCCccchhcccCcccchhhHhh
Q 004879 2 RLAETDARIRVAAQEKIHVE-------LLEDQ-LQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKEL 73 (725)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (725)
+.++..+++..+.+.+..+. .++.. +++||++.++. ..++
T Consensus 254 ~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~s~~i~~Lr~~~~~~--------------------------------~~~~ 301 (458)
T COG3206 254 RLAQAEARLASLLQLLPLGREAAALREVLESPTIQDLRQQYAQV--------------------------------RQQI 301 (458)
T ss_pred HHHHHHHHHHHHHHhhcccccchhhhHHhccHHHHHHHHHHHHH--------------------------------HHHH
Q ss_pred hhhhhhhccchhHHHHHHHHhhhh-----hhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHH
Q 004879 74 DSLKTENLSLKNDIKVLKAELNSV-----KDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEK 148 (725)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (725)
..+.++=....-.+..++.++.++ .+....+..+..|...+++..+.|+.++...+..++++...+.+.-.|--+
T Consensus 302 ~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re 381 (458)
T COG3206 302 ADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELERE 381 (458)
T ss_pred HHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhhhhHHH
Q 004879 149 VENLQGLLAKATKQADQAIS 168 (725)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~ 168 (725)
++..+.+++....+-.++..
T Consensus 382 ~~~~r~~ye~lL~r~qe~~~ 401 (458)
T COG3206 382 AEAARSLYETLLQRYQELSI 401 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 407
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=49.21 E-value=12 Score=32.76 Aligned_cols=27 Identities=37% Similarity=0.556 Sum_probs=22.3
Q ss_pred hhhhhhhhccchhHHHHHHHHhhhhhh
Q 004879 73 LDSLKTENLSLKNDIKVLKAELNSVKD 99 (725)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (725)
++.|.+||..||..|+.|+++|...+.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467889999999999999988876543
No 408
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=48.84 E-value=22 Score=40.59 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=30.1
Q ss_pred CCCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Q 004879 329 ISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 329 ~~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP 374 (725)
++++|||++. ||.|.+-..|++.|.++||+|.++..
T Consensus 117 ~~~~mkILVT----------GatGFIGs~Lv~~Ll~~G~~V~~ldr 152 (436)
T PLN02166 117 GRKRLRIVVT----------GGAGFVGSHLVDKLIGRGDEVIVIDN 152 (436)
T ss_pred ccCCCEEEEE----------CCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 4667997765 88889999999999999999988753
No 409
>PF03568 Peptidase_C50: Peptidase family C50; InterPro: IPR005314 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C50 (separase family, clan CD). The active site residues for members of this family and family C14 occur in the same order in the sequence: H,C. The separases are caspase-like proteases, which plays a central role in the chromosome segregation. In yeast they cleave the rad21 subunit of the cohesin complex at the onset of anaphase. During most of the cell cycle, separase is inactivated by the securin/cut2 protein, which probably covers its active site. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0005634 nucleus
Probab=48.78 E-value=1.1e+02 Score=34.38 Aligned_cols=34 Identities=12% Similarity=0.154 Sum_probs=26.9
Q ss_pred hccccchhhhhhHHHHHHHHHHHHHHHhhhhhhH
Q 004879 133 AKLSTLKVECKDLYEKVENLQGLLAKATKQADQA 166 (725)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (725)
.....=+-+++.||.+-.+|...|....+..|..
T Consensus 58 ~~~~~t~~~kk~WW~~R~~LD~rL~~LL~~iE~~ 91 (383)
T PF03568_consen 58 TSKIKTKEDKKKWWKERKALDSRLKDLLENIENS 91 (383)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456678899999999999999988888873
No 410
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=48.52 E-value=3.9e+02 Score=28.96 Aligned_cols=43 Identities=30% Similarity=0.464 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHH
Q 004879 174 QELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEE 216 (725)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (725)
++|..-+|+-+....+.=...|..|-.+.|-++.+-|-+++-|
T Consensus 200 k~LKe~~drRe~~v~~iL~~~L~~eq~~dy~~fv~mKa~Ll~e 242 (264)
T PF08687_consen 200 KELKENLDRRERVVSEILARYLSEEQLADYRHFVKMKAALLIE 242 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777778888889999999888888877
No 411
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=48.41 E-value=6.6e+02 Score=31.64 Aligned_cols=133 Identities=22% Similarity=0.252 Sum_probs=74.2
Q ss_pred HHHhhhhhHHhhH---HHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhh----hhHHHHH
Q 004879 106 MLEMERSSLESSL---KELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQ----QNQELRK 178 (725)
Q Consensus 106 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 178 (725)
.|..+|..++++. .|+|.+..+.+.-..++.-.-- .+..+=..|-.-.+..++|.+.+..... +|-.|-+
T Consensus 397 ql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t---~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d 473 (980)
T KOG0980|consen 397 QLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYT---ELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLND 473 (980)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4556667777776 8888888888776665543211 2322211122223344555554433222 2222322
Q ss_pred HHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhh
Q 004879 179 KVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLH 244 (725)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (725)
+ ||+.=.+...|+---|.+...++-++|.+.++-.++.+....+....+.+-....++-+.|.
T Consensus 474 ~---le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~ 536 (980)
T KOG0980|consen 474 Q---LEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLK 536 (980)
T ss_pred H---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 2 23333334444444555666677777777777777888888877777777777666666544
No 412
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=47.80 E-value=52 Score=33.33 Aligned_cols=90 Identities=19% Similarity=0.309 Sum_probs=56.7
Q ss_pred hhhhhhhhhHHHHHHh--------hhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhh
Q 004879 94 LNSVKDADERVVMLEM--------ERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQ 165 (725)
Q Consensus 94 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (725)
+...-+|+++...+.. .+..=+..=+-||.=-.-+.+|++.+..|-. ++=+||++|+.+++.-.+-..
T Consensus 28 ~~q~m~TEEFSa~IG~vLd~yL~yQKafnE~MekYLe~lNlPSr~DiarvA~lvi---nlE~kvD~lee~fdd~~d~l~- 103 (189)
T TIGR02132 28 IGDNIKREEFSALMGNVLDLNLFYQKALNDTTGNYLEQVNVPTKEDIANVASLVI---NLEEKVDLIEEFFDDKFDELE- 103 (189)
T ss_pred HHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-
Confidence 4445566666654432 2333333334445555567888888888876 577889888888876433322
Q ss_pred HHHHhhhhHHHHHHHHHHHHhHhh
Q 004879 166 AISVLQQNQELRKKVDKLEESLDE 189 (725)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~ 189 (725)
.-+.|++.+.+.|.++|.-|..
T Consensus 104 --~q~eq~~~~~~~v~~~~q~~~~ 125 (189)
T TIGR02132 104 --AQQEQAPALKKDVTKLKQDIKS 125 (189)
T ss_pred --HHHhhCchHHhHHHHHHHHHHH
Confidence 3456778888888888776654
No 413
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=47.72 E-value=1.2e+02 Score=32.03 Aligned_cols=46 Identities=13% Similarity=0.139 Sum_probs=34.2
Q ss_pred HHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhc
Q 004879 89 VLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAK 134 (725)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (725)
.+..++..+.+++.+|..+++|...|...=...+..|..-++|+..
T Consensus 19 ~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~ 64 (230)
T PF10146_consen 19 EILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINT 64 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777888888888888887777777777777777765
No 414
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=47.68 E-value=3.2e+02 Score=33.44 Aligned_cols=26 Identities=31% Similarity=0.426 Sum_probs=15.1
Q ss_pred hhhccchhHHHHHHHHhhhhhhhhhH
Q 004879 78 TENLSLKNDIKVLKAELNSVKDADER 103 (725)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (725)
.+...+.+|+..++++|..|.++.++
T Consensus 175 k~~~~~~~~~~~~~~~l~~v~~~~~~ 200 (670)
T KOG0239|consen 175 KESLKLESDLGDLVTELEHVTNSISE 200 (670)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 44444555666666666666665554
No 415
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=47.66 E-value=1.6e+02 Score=27.82 Aligned_cols=47 Identities=28% Similarity=0.461 Sum_probs=34.9
Q ss_pred HHHHHHHHHHH--HhHhhhhhHHHhHHHH--HhHHHHHHHHHHHHHHHhhh
Q 004879 174 QELRKKVDKLE--ESLDEANIYKLSSEKM--QQYNELMQQKMKLLEERLQR 220 (725)
Q Consensus 174 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 220 (725)
+.|+.||-+|. ..+..--+.+||+-+| +.....++.-++.||+||+.
T Consensus 17 ~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE~RLRa 67 (120)
T PF10482_consen 17 QGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLENRLRA 67 (120)
T ss_pred HHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46777887774 4567777888888665 46667788888999998864
No 416
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=47.64 E-value=3.7e+02 Score=28.46 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=11.6
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHh
Q 004879 68 SFSKELDSLKTENLSLKNDIKVLKAEL 94 (725)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (725)
+|...++.++.|.-.+-+-=..+...|
T Consensus 58 Tl~~sw~~~~~E~e~~a~~H~~la~~L 84 (240)
T cd07672 58 TLKRSLDVFKQQIDNVGQSHIQLAQTL 84 (240)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555554444433333333333
No 417
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=47.62 E-value=3.5e+02 Score=28.15 Aligned_cols=82 Identities=16% Similarity=0.271 Sum_probs=43.2
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhH---HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH-HHH
Q 004879 163 ADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQY---NELMQQKMKLLEERLQRSDEEIHSYVQLYQES-VKE 238 (725)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 238 (725)
-.+=.-+++..|.++..+++.++.++.-...- .+++..+. +.-.++++.....+++..-.-+..=|..+... +.+
T Consensus 115 f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~-~~~K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~erv~d 193 (224)
T cd07623 115 FHERVKVWQNWQNAQQTLTKKREAKAKLELSG-RTDKLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKD 193 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344466777777777777776655543211 11222111 12234455555555666655666656665444 666
Q ss_pred HHHHhhh
Q 004879 239 FQDTLHS 245 (725)
Q Consensus 239 ~~~~~~~ 245 (725)
|..+|..
T Consensus 194 fk~~l~~ 200 (224)
T cd07623 194 FKDIIIK 200 (224)
T ss_pred HHHHHHH
Confidence 6666665
No 418
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=47.38 E-value=2.7e+02 Score=26.87 Aligned_cols=28 Identities=32% Similarity=0.375 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 004879 208 QQKMKLLEERLQRSDEEIHSYVQLYQES 235 (725)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (725)
.+.++.+.+.+......+.++.+..+.+
T Consensus 145 l~~~~~~~~~~~~~~~~~~~~~~~~~~l 172 (213)
T cd00176 145 LKKHKELEEELEAHEPRLKSLNELAEEL 172 (213)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 3444444444554444444444444444
No 419
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=47.36 E-value=39 Score=32.16 Aligned_cols=38 Identities=13% Similarity=0.119 Sum_probs=30.4
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCe-EEEEe
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHL-VEIVL 373 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHe-V~VIt 373 (725)
|||+++.. -+|+ .+-.++-..++++++.+.||+ |.|+.
T Consensus 1 m~~~iv~~-~~Py--~~~~~~~al~~A~aa~~~gh~v~~vFf 39 (128)
T PRK00207 1 MRYAIAVT-GPAY--GTQQASSAYQFAQALLAEGHELVSVFF 39 (128)
T ss_pred CEEEEEEc-CCCC--CCHHHHHHHHHHHHHHhCCCCeeEEEE
Confidence 78888876 3676 456678899999999999998 57775
No 420
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=47.21 E-value=1.7e+02 Score=32.70 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=20.1
Q ss_pred hhhhhhhhhHHHHHHhhhhhHHhhH
Q 004879 94 LNSVKDADERVVMLEMERSSLESSL 118 (725)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (725)
....++.|.-..+|||||..|...|
T Consensus 131 aqdaaeGDDlt~~LEKEReqL~QQi 155 (561)
T KOG1103|consen 131 AQDAAEGDDLTAHLEKEREQLQQQI 155 (561)
T ss_pred hhhhhccchHHHHHHHHHHHHHHHH
Confidence 4566788888999999999887655
No 421
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=47.20 E-value=13 Score=32.31 Aligned_cols=30 Identities=13% Similarity=-0.127 Sum_probs=24.8
Q ss_pred eEEEcCCcccchHHHHHHcCCCccccCCCC
Q 004879 686 SFLRKHIFNICNLYIKLGQGGDLTVNNNCE 715 (725)
Q Consensus 686 IfVlPS~~EpfGLv~LEAMg~~~~V~~~~~ 715 (725)
|++.|+...++++..+|+|+++.+|+...+
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~ 30 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVISDDS 30 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEECCh
Confidence 467899999999999999998888765433
No 422
>PLN02778 3,5-epimerase/4-reductase
Probab=47.13 E-value=29 Score=37.30 Aligned_cols=37 Identities=24% Similarity=0.184 Sum_probs=28.8
Q ss_pred CCCCCCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Q 004879 326 SSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIV 372 (725)
Q Consensus 326 ~~~~~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VI 372 (725)
+.+....|||++. ||.|..-..|++.|.++||+|.+.
T Consensus 3 ~~~~~~~~kiLVt----------G~tGfiG~~l~~~L~~~g~~V~~~ 39 (298)
T PLN02778 3 GTAGSATLKFLIY----------GKTGWIGGLLGKLCQEQGIDFHYG 39 (298)
T ss_pred CCCCCCCCeEEEE----------CCCCHHHHHHHHHHHhCCCEEEEe
Confidence 3445566888765 778888888999999999998754
No 423
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=47.12 E-value=4.4e+02 Score=29.20 Aligned_cols=30 Identities=30% Similarity=0.444 Sum_probs=22.7
Q ss_pred chhhHhhhhhhhhhccchhHHHHHHHHhhh
Q 004879 67 HSFSKELDSLKTENLSLKNDIKVLKAELNS 96 (725)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (725)
+-+...+++|+.||..||..+...|..-..
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~ 52 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKH 52 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 677788888888888888877777665444
No 424
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=46.89 E-value=31 Score=31.45 Aligned_cols=48 Identities=23% Similarity=0.477 Sum_probs=36.1
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhH
Q 004879 68 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSL 118 (725)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (725)
+|-.|||-+|||-..+|.|+++-+.....++ |.++-.||--.-||...
T Consensus 68 alcdefdmikee~~emkkdleaankrve~q~---ekiflmekkfe~lekky 115 (122)
T PF05325_consen 68 ALCDEFDMIKEETIEMKKDLEAANKRVESQA---EKIFLMEKKFETLEKKY 115 (122)
T ss_pred eechhhhHHHHHHHHHHHHHHHHHHHHHHhh---hhhhhHHHHHHHHHHHH
Confidence 6789999999999999999999887665544 56666666555555443
No 425
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=46.36 E-value=3e+02 Score=27.03 Aligned_cols=102 Identities=24% Similarity=0.278 Sum_probs=0.0
Q ss_pred hhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHH
Q 004879 74 DSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQ 153 (725)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (725)
+.|-+=+...+++|+.|+..|.++.+... +-.+.|..++
T Consensus 25 ~~L~k~~~~v~~~i~~L~~~L~~~~n~t~-----------------------------------------~~~~~v~~i~ 63 (146)
T PF08702_consen 25 DFLDKYERDVDKDIQELENLLDQISNSTS-----------------------------------------EAFEYVKNIK 63 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------HHHHHHHHHH
T ss_pred HHHHHHccchHHHHHHHHHHHHHHHHhhh-----------------------------------------hHHHHHHHHH
Q ss_pred HHHHHHhhh-hhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhH-HHHHhHHHHHHHHHHHHHHHhh
Q 004879 154 GLLAKATKQ-ADQAISVLQQNQELRKKVDKLEESLDEANIYKLSS-EKMQQYNELMQQKMKLLEERLQ 219 (725)
Q Consensus 154 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 219 (725)
..+....++ .+.-..+-+-..+|++.. -.-++...+..... ..+|+++.-+.+||..||-...
T Consensus 64 ~~~~~~q~~~~~n~~i~~~~s~~l~~~~---~~~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~ 128 (146)
T PF08702_consen 64 DSLRPRQKQAKPNDNIYNQYSKSLRKMI---IYILETKIINQPSNIRVLQNILRSNRQKIQRLEQDID 128 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccccCCcccHHHHHHHHHHHHH---HHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHH
No 426
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.10 E-value=4.7e+02 Score=29.24 Aligned_cols=40 Identities=25% Similarity=0.253 Sum_probs=30.2
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCC
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCM 379 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l 379 (725)
|||++=... +|. ..+...+...|.++||+|.|-+-.++..
T Consensus 1 mkVwiDI~n-~~h------vhfFk~lI~elekkG~ev~iT~rd~~~v 40 (346)
T COG1817 1 MKVWIDIGN-PPH------VHFFKNLIWELEKKGHEVLITCRDFGVV 40 (346)
T ss_pred CeEEEEcCC-cch------hhHHHHHHHHHHhCCeEEEEEEeecCcH
Confidence 567666543 343 4678889999999999999888777653
No 427
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=46.03 E-value=3.6e+02 Score=27.95 Aligned_cols=115 Identities=19% Similarity=0.290 Sum_probs=0.0
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHhhhhh---hHHHHhh-hhHHHHHHHHHHHHhHhhhhhHHHhHH----HHHhHHH
Q 004879 134 KLSTLKVECKDLYEKVENLQGLLAKATKQAD---QAISVLQ-QNQELRKKVDKLEESLDEANIYKLSSE----KMQQYNE 205 (725)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 205 (725)
++..++.|...|.++...++.-|.-|++-+| .++-|+. .++.+..+++.++..|.++.--.--.+ ..-..+-
T Consensus 12 ri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~ 91 (205)
T KOG1003|consen 12 RIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLV 91 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhhhHHhhhh
Q 004879 206 LMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKK 252 (725)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (725)
+...-+...|+|....-..+.-+-...... +..|..|+.-.++
T Consensus 92 iiE~dLE~~eeraE~~Es~~~eLeEe~~~~----~~nlk~l~~~ee~ 134 (205)
T KOG1003|consen 92 IIEGELERAEERAEAAESQSEELEEDLRIL----DSNLKSLSAKEEK 134 (205)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHh----HhHHHHHHHHHHH
No 428
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=45.97 E-value=4e+02 Score=28.43 Aligned_cols=67 Identities=10% Similarity=0.408 Sum_probs=43.5
Q ss_pred HhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH-HHHHHHHhhh
Q 004879 169 VLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQES-VKEFQDTLHS 245 (725)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 245 (725)
|+.+.+..|-.++++++-|... .++ .+.+.+.+..+|++++..++.++.=+++++.. +..|..++.+
T Consensus 154 vlk~R~~~Q~~le~k~e~l~k~-----~~d-----r~~~~~ev~~~e~kve~a~~~~k~e~~Rf~~~k~~D~k~~~~~ 221 (243)
T cd07666 154 VIKRRDQIQAELDSKVEALANK-----KAD-----RDLLKEEIEKLEDKVECANNALKADWERWKQNMQTDLRSAFTD 221 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-----hhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666677777776666652 122 14777788888888888888877666665555 5555555544
No 429
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.91 E-value=5.4e+02 Score=29.94 Aligned_cols=47 Identities=28% Similarity=0.246 Sum_probs=26.2
Q ss_pred hhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHH
Q 004879 69 FSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELE 122 (725)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (725)
--+|++++.++|-..-+-....|+.+. .+..||.+|+.+++..+++|
T Consensus 229 e~ee~eel~eq~eeneel~ae~kqh~v-------~~~ales~~sq~~e~~selE 275 (521)
T KOG1937|consen 229 EEEEVEELTEQNEENEELQAEYKQHLV-------EYKALESKRSQFEEQNSELE 275 (521)
T ss_pred cchhHHHHHhhhhhHHHHHHHHHHHHH-------HHHHHHhhhHHHHHHHHHHH
Confidence 344555666555544333333333333 34556777777777777777
No 430
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=45.64 E-value=40 Score=34.27 Aligned_cols=91 Identities=25% Similarity=0.393 Sum_probs=32.7
Q ss_pred CcccchhhHhhhhhhhhhccchhHHHHHHHHhh----hhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhh----hc
Q 004879 63 NSEIHSFSKELDSLKTENLSLKNDIKVLKAELN----SVKDADERVVMLEMERSSLESSLKELESKLSISQEDV----AK 134 (725)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 134 (725)
...+-.+-+||..+...+-.+-.-+..+-.++. .......++..|+.|+..|+..+++|+..+..-+..+ .+
T Consensus 73 e~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE 152 (194)
T PF08614_consen 73 EQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDE 152 (194)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677777777766665555544444442 2334455677777777777777777666665544443 24
Q ss_pred cccchhhhhhHHHHHHHHH
Q 004879 135 LSTLKVECKDLYEKVENLQ 153 (725)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~ 153 (725)
+.+|+.++..+-+|...|+
T Consensus 153 ~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 153 LQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666655656655554
No 431
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=45.45 E-value=33 Score=34.04 Aligned_cols=57 Identities=30% Similarity=0.376 Sum_probs=41.0
Q ss_pred hhhhhhhccchhHHHHHHHHhhhhhhhhhHHH--HHHhhhhhHHhhHHHHHhhhhcchh
Q 004879 74 DSLKTENLSLKNDIKVLKAELNSVKDADERVV--MLEMERSSLESSLKELESKLSISQE 130 (725)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (725)
....+|...|+.++..+|.|++.+--.||+.. +|++....+++.|+++.......+.
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~ 94 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKS 94 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788889999999999999999998764 5666666677666666666555444
No 432
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.37 E-value=2.3e+02 Score=31.60 Aligned_cols=94 Identities=14% Similarity=0.228 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhhhHHhhhhhccCCCCCCCChHHHHHHHHHHhhhhhcccCC
Q 004879 205 ELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLS 284 (725)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~d~~~~~~~~~ 284 (725)
-.-+|+|++++|+|+.-...++..++.+..-++| .|++++. .+....++.++.-- +.++..| ++. .+-..
T Consensus 245 ~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e---al~~~~n-~~~~~~D~~~~~~~--~l~kq~l--~~~--A~d~a 314 (365)
T KOG2391|consen 245 NIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE---ALEKAEN-LEALDIDEAIECTA--PLYKQIL--ECY--ALDLA 314 (365)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHhhhcc-CcCCCchhhhhccc--hHHHHHH--Hhh--hhhhH
Confidence 4557889999998888888888888888777777 6666665 44322222222221 2233332 222 23445
Q ss_pred hHHHHHHHHHHHhhcCCchhhhhh
Q 004879 285 TSEAKLLREMVWKRNGRIRDAYME 308 (725)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~ 308 (725)
.+||-.-=....++.....+.|+-
T Consensus 315 ieD~i~~L~~~~r~G~i~l~~yLr 338 (365)
T KOG2391|consen 315 IEDAIYSLGKSLRDGVIDLDQYLR 338 (365)
T ss_pred HHHHHHHHHHHHhcCeeeHHHHHH
Confidence 566643333344556666777763
No 433
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=45.32 E-value=28 Score=35.69 Aligned_cols=26 Identities=38% Similarity=0.473 Sum_probs=22.2
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEee
Q 004879 349 GGLGDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 349 GGlg~vV~~LaraL~~~GHeV~VItP 374 (725)
||.|.+-..|++.|.+.||+|.++..
T Consensus 7 GG~G~mG~ala~~L~~~G~~V~v~~r 32 (219)
T TIGR01915 7 GGTGDQGKGLALRLAKAGNKIIIGSR 32 (219)
T ss_pred cCCCHHHHHHHHHHHhCCCEEEEEEc
Confidence 67788888999999999999988754
No 434
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=44.96 E-value=2.8e+02 Score=31.68 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=12.8
Q ss_pred HhHHHHHHHHHHHhhcccC
Q 004879 22 LLEDQLQKLQHELTHRGVS 40 (725)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~ 40 (725)
-|..++|++++.|..+|.-
T Consensus 105 ~l~~~~~~lk~~L~~eGlf 123 (438)
T PRK00286 105 ALAAAFEQLKEKLAAEGLF 123 (438)
T ss_pred HHHHHHHHHHHHHHHCCCC
Confidence 3566777777777777554
No 435
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=44.87 E-value=4.8e+02 Score=32.20 Aligned_cols=24 Identities=13% Similarity=0.315 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhH
Q 004879 143 KDLYEKVENLQGLLAKATKQADQA 166 (725)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~ 166 (725)
++|-++++.++.-|....+..+++
T Consensus 635 r~~~~EL~~~~~~l~~l~~si~~l 658 (717)
T PF10168_consen 635 REFKKELERMKDQLQDLKASIEQL 658 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666655555554
No 436
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=44.85 E-value=37 Score=38.19 Aligned_cols=18 Identities=33% Similarity=0.390 Sum_probs=13.7
Q ss_pred HHHHHHHHHhHhhhhhHH
Q 004879 177 RKKVDKLEESLDEANIYK 194 (725)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~ 194 (725)
..+++.||.....+||.=
T Consensus 178 ~~kl~DlEnrsRRnNiRI 195 (370)
T PF02994_consen 178 EDKLDDLENRSRRNNIRI 195 (370)
T ss_dssp HHHHHHHHHHHTTTEEEE
T ss_pred HHHHHHHHhhccCCceeE
Confidence 456788888888888764
No 437
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=44.29 E-value=1.3e+02 Score=28.27 Aligned_cols=60 Identities=28% Similarity=0.362 Sum_probs=38.3
Q ss_pred HhhhhhHHHhHHHHHhHHHHHHHH------HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhhhHHhh
Q 004879 187 LDEANIYKLSSEKMQQYNELMQQK------MKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEES 250 (725)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (725)
+-..++.|+|+-+|=-+-||++.+ +..++++++.+..++..+-+.++ +..+-+..|+.|.
T Consensus 52 ~~dp~~~klfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~----~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 52 FVDPNFLKLFRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLK----KQKEEIKKLKKES 117 (118)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhc
Confidence 456788999999999998887654 45555656666655555444443 3345555555554
No 438
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=44.26 E-value=98 Score=27.57 Aligned_cols=58 Identities=29% Similarity=0.397 Sum_probs=34.9
Q ss_pred hHhhhhhhhh--------hccchhHHHHHHHHhhh-hhhhhhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 004879 70 SKELDSLKTE--------NLSLKNDIKVLKAELNS-VKDADERVVMLEMERSSLESSLKELESKLSI 127 (725)
Q Consensus 70 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (725)
..||..+..+ ++.++.|...+...|.. .+..++.+-.|+++...++..+++++.+|-+
T Consensus 35 ~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 35 LEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555 55666666666666643 2334555666666666666666666666544
No 439
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.84 E-value=2.6e+02 Score=32.76 Aligned_cols=115 Identities=23% Similarity=0.262 Sum_probs=71.4
Q ss_pred cccCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhh----------hcch
Q 004879 60 VLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKL----------SISQ 129 (725)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 129 (725)
-..+.+|--+.-=|..|+. .+|--.+..|+--+.++.+.|++-+|.|+.+.--+++.+.-.|+ .+.|
T Consensus 323 p~s~kliPVpvvGF~dL~~---R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikq 399 (508)
T KOG3091|consen 323 PPSNKLIPVPVVGFEDLRQ---RLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQ 399 (508)
T ss_pred CCcccccceeccchHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555543 46777788888888888899999999988776444444444433 3444
Q ss_pred hhhhccc-cchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhh
Q 004879 130 EDVAKLS-TLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEAN 191 (725)
Q Consensus 130 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (725)
+-+.+-+ +|+-+=..||.|..+|.+.+..= -+|...|++|.+-++--+
T Consensus 400 eilr~~G~~L~~~EE~Lr~Kldtll~~ln~P--------------nq~k~Rl~~L~e~~r~q~ 448 (508)
T KOG3091|consen 400 EILRKRGYALTPDEEELRAKLDTLLAQLNAP--------------NQLKARLDELYEILRMQN 448 (508)
T ss_pred HHHhccCCcCCccHHHHHHHHHHHHHHhcCh--------------HHHHHHHHHHHHHHHhhc
Confidence 4444432 45555456888877776655442 456677777776665543
No 440
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=43.70 E-value=6.3e+02 Score=30.06 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=16.6
Q ss_pred hhhhhHHHhHHHHHHHHHHHhhc
Q 004879 15 QEKIHVELLEDQLQKLQHELTHR 37 (725)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~ 37 (725)
|-+.-...+|.+|+++..++.|-
T Consensus 161 ~~Ge~~~~lEk~Le~i~~~l~qf 183 (570)
T COG4477 161 QYGEAAPELEKKLENIEEELSQF 183 (570)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Confidence 33445667888888888888775
No 441
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=43.69 E-value=4.2e+02 Score=29.93 Aligned_cols=19 Identities=16% Similarity=0.302 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhhhhHHhhh
Q 004879 233 QESVKEFQDTLHSLKEESK 251 (725)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~ 251 (725)
+..+++-+..|..++.+-+
T Consensus 233 ~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 233 EARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555544
No 442
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=43.63 E-value=4.1e+02 Score=27.82 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=16.3
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhh
Q 004879 68 SFSKELDSLKTENLSLKNDIKVLKAELNS 96 (725)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (725)
++...++.++.|.-.+-+.=..+-..|..
T Consensus 57 sl~~aw~~i~~e~e~~a~~H~~la~~L~~ 85 (239)
T cd07647 57 TLKSSWDSLRKETENVANAHIQLAQSLRE 85 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777666555544444444433
No 443
>PLN00016 RNA-binding protein; Provisional
Probab=43.36 E-value=24 Score=39.13 Aligned_cols=39 Identities=26% Similarity=0.269 Sum_probs=31.6
Q ss_pred CCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 331 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 331 ~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
..|+|++++. ..||.|.+-..|++.|.+.||+|++++..
T Consensus 51 ~~~~VLVt~~------~~GatG~iG~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 51 EKKKVLIVNT------NSGGHAFIGFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred ccceEEEEec------cCCCceeEhHHHHHHHHHCCCEEEEEecC
Confidence 3468887765 25888888889999999999999999754
No 444
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=42.85 E-value=30 Score=29.28 Aligned_cols=47 Identities=21% Similarity=0.360 Sum_probs=33.7
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhH
Q 004879 68 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSL 114 (725)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (725)
.+..+++.|+.++..++...+.|+.++...+.+++++...-+++-++
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm 67 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGM 67 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCC
Confidence 45667777777777777777777777777766778777776665443
No 445
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=42.60 E-value=1.3e+02 Score=32.42 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=18.9
Q ss_pred cchhhhhHHhhhhhhhHHHhHHHHHHHHHH
Q 004879 4 AETDARIRVAAQEKIHVELLEDQLQKLQHE 33 (725)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (725)
.+.++-++-....++.|+-|...|+.+...
T Consensus 152 ~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea 181 (269)
T PF05278_consen 152 KEMIATLKDLESAKVKVDWLRSKLEEILEA 181 (269)
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHH
Confidence 344455555566777777777777766543
No 446
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=42.43 E-value=2.7e+02 Score=25.35 Aligned_cols=91 Identities=21% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHhhHHHHHhhhhcchhhhhccccc----hhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhh
Q 004879 114 LESSLKELESKLSISQEDVAKLSTL----KVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDE 189 (725)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (725)
+.+.-+=+++.+.++.+|..-|-.+ -..|.++-+.+.+|..-+.....+..+----++|=.++.++|.+||+
T Consensus 5 f~~~~~~v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~---- 80 (99)
T PF10046_consen 5 FSKVSKYVESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQ---- 80 (99)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_pred hhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhc
Q 004879 190 ANIYKLSSEKMQQYNELMQQKMKLLEERLQRS 221 (725)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (725)
..+.+-+-.+.||.++++.
T Consensus 81 -------------~v~~LD~ysk~LE~k~k~l 99 (99)
T PF10046_consen 81 -------------TVYELDEYSKELESKFKKL 99 (99)
T ss_pred -------------HHHHHHHHHHHHHHHhhcC
No 447
>PRK13411 molecular chaperone DnaK; Provisional
Probab=42.31 E-value=1.1e+02 Score=37.00 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=29.6
Q ss_pred chhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhh
Q 004879 83 LKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKL 125 (725)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (725)
-.++++.++.++.+.++.|+....++.-+..||+-+-+++.++
T Consensus 503 s~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l 545 (653)
T PRK13411 503 SSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTL 545 (653)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777766666666666666666666655
No 448
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=42.19 E-value=1.2e+02 Score=26.49 Aligned_cols=68 Identities=19% Similarity=0.306 Sum_probs=39.2
Q ss_pred HHHHHHhhhhhhHHHHhhh-hHHHHHHHHH-HHHhHhhhhh-HHHhHHHHHhHHHHHHHHHHHHHHHhhhc
Q 004879 154 GLLAKATKQADQAISVLQQ-NQELRKKVDK-LEESLDEANI-YKLSSEKMQQYNELMQQKMKLLEERLQRS 221 (725)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (725)
.+++...+++.+++...+. -.|+.+.+.. ++.-|.+-++ +.--=++|+..+...++|+.+||.|+..+
T Consensus 6 ~~~d~~~~~~~~~~~~~~~~~~e~e~~~r~~l~~~l~kldlVtREEFd~q~~~L~~~r~kl~~LEarl~~L 76 (79)
T PF04380_consen 6 KIFDDLAKQISEALPAAQGPREEIEKNIRARLQSALSKLDLVTREEFDAQKAVLARTREKLEALEARLAAL 76 (79)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666554421 1223333321 2333333332 22233789999999999999999988754
No 449
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=41.88 E-value=3.6e+02 Score=26.76 Aligned_cols=37 Identities=22% Similarity=0.451 Sum_probs=28.6
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHH
Q 004879 70 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVM 106 (725)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (725)
-.+++.+|..|..++.-+..+..+|....+..+-+-.
T Consensus 5 ~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~ 41 (177)
T PF13870_consen 5 RNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHL 41 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH
Confidence 3567888889999999998888888877776665543
No 450
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=41.65 E-value=4.5e+02 Score=27.82 Aligned_cols=110 Identities=22% Similarity=0.283 Sum_probs=57.6
Q ss_pred HHHhHHHHHHHHHHHhhcccCcccchhhhhccCCCccchhcccCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhh
Q 004879 20 VELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKD 99 (725)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (725)
..-++..++.++++|...... +++...-++.+..+...|..|++.|+.+...+..
T Consensus 19 ~~~l~~~~e~~~~~L~~~~~~-------------------------~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~ 73 (264)
T PF06008_consen 19 PYKLLSSIEDLTNQLRSYRSK-------------------------LNPQKQQLDPLEKELESLEQDVENLQEKATKVSR 73 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-------------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667778888887765322 2233445666666666677777777766655443
Q ss_pred h-----------hhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHH
Q 004879 100 A-----------DERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKA 159 (725)
Q Consensus 100 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (725)
. -.+...|+..-..+...+.++-++......+-..+++ .++-.+.+..+.+|...
T Consensus 74 ~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~-----~~l~~~l~ea~~mL~em 139 (264)
T PF06008_consen 74 KAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPS-----EDLQRALAEAQRMLEEM 139 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCH-----HHHHHHHHHHHHHHHHH
Confidence 3 3344445555555555555555555433331111221 24445555555555443
No 451
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=41.53 E-value=3e+02 Score=30.29 Aligned_cols=27 Identities=15% Similarity=0.083 Sum_probs=13.8
Q ss_pred CcHHHHHHHHHHHHHHCCCe--EEEEeeC
Q 004879 349 GGLGDVVAGLGKALQKKGHL--VEIVLPK 375 (725)
Q Consensus 349 GGlg~vV~~LaraL~~~GHe--V~VItP~ 375 (725)
.|.|..+.-|.--..+.|.. -..+.|.
T Consensus 173 AA~Gq~~LLL~~la~~l~~~f~~y~l~P~ 201 (314)
T PF04111_consen 173 AAWGQTALLLQTLAKKLNFKFQRYRLVPM 201 (314)
T ss_dssp HHHHHHHHHHHHHHHHCT---SSEEEE--
T ss_pred HHHHHHHHHHHHHHHHhCCCcccceeEec
Confidence 46777776666655566643 2444453
No 452
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=41.42 E-value=3.2e+02 Score=33.95 Aligned_cols=53 Identities=21% Similarity=0.346 Sum_probs=24.7
Q ss_pred hhhhhhhccchhHHHHHHHHhhhhhh----hhhHHHHHHhhhhhHHhhHHHHHhhhh
Q 004879 74 DSLKTENLSLKNDIKVLKAELNSVKD----ADERVVMLEMERSSLESSLKELESKLS 126 (725)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (725)
.....++..+++.++.++.+-..+.. .+..+-.+..+-..++..|.+|.++|.
T Consensus 585 ea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~ 641 (769)
T PF05911_consen 585 EADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELE 641 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666655554433221 233333344444444555555555554
No 453
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=41.36 E-value=5.2e+02 Score=28.44 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=12.3
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHH
Q 004879 66 IHSFSKELDSLKTENLSLKNDIKVLKA 92 (725)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (725)
+-.|..-+..+-.|+..+..++..++.
T Consensus 24 ~~~L~kk~~ell~e~k~~~k~~~~~~K 50 (309)
T PF09728_consen 24 LEALCKKYAELLEEMKRLQKQLKKLQK 50 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455444444444443
No 454
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=41.35 E-value=21 Score=28.12 Aligned_cols=26 Identities=42% Similarity=0.621 Sum_probs=12.7
Q ss_pred hhHhhhhhhhhhccchhHHHHHHHHh
Q 004879 69 FSKELDSLKTENLSLKNDIKVLKAEL 94 (725)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (725)
|..+.+.|+.||..|+..+..|+.++
T Consensus 17 Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 17 LKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444555555555555555554443
No 455
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=41.33 E-value=4.1e+02 Score=27.18 Aligned_cols=53 Identities=21% Similarity=0.397 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHH
Q 004879 176 LRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQL 231 (725)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (725)
|..|||.+|+.+++. +...+ +|+.-+--++.++..||+|+...++..--+|++
T Consensus 84 lE~kvD~lee~fdd~--~d~l~-~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~l 136 (189)
T TIGR02132 84 LEEKVDLIEEFFDDK--FDELE-AQQEQAPALKKDVTKLKQDIKSLDKKLDKILEL 136 (189)
T ss_pred HHHHHHHHHHHHHHH--HHHHH-HHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666541 11111 333333444445555555555544444333333
No 456
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=41.05 E-value=4.7e+02 Score=27.83 Aligned_cols=49 Identities=14% Similarity=0.260 Sum_probs=30.6
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHHHHHHhhhhHHhhhhhccCCCCCCCChHHHHHHHHHHhhh
Q 004879 214 LEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGW 277 (725)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~d~~ 277 (725)
+...+.+.+.+.+.++..+..++.+|...-.. + ...|+-|||.+-| |.+
T Consensus 126 l~~~~~k~~~~l~~l~~~v~~l~~~~~~~~~~-----~--------~~~~~~flsq~~l--~~Y 174 (256)
T PF14932_consen 126 LSAECSKLNNELNQLLGEVSKLASELAHAHSG-----Q--------QQNPPVFLSQMPL--EQY 174 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----c--------cCCCCchhhhCCH--HHH
Confidence 44447778888888888888887666541100 0 1347778887663 444
No 457
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=40.84 E-value=6.6e+02 Score=29.50 Aligned_cols=55 Identities=18% Similarity=0.276 Sum_probs=34.5
Q ss_pred hccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHH-hhhhHHHHHHHHHHHHhH
Q 004879 133 AKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISV-LQQNQELRKKVDKLEESL 187 (725)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 187 (725)
.++..|+.|+..+-|.+..|+..++....+..+.-.- ..+.+-++..+.+++..+
T Consensus 274 ~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~ 329 (511)
T PF09787_consen 274 IELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQL 329 (511)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5578889999999999999988886555554333222 223444555555555444
No 458
>PRK14151 heat shock protein GrpE; Provisional
Probab=40.73 E-value=3.9e+02 Score=27.06 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 004879 223 EEIHSYVQLYQESVKEFQDTLHS 245 (725)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~ 245 (725)
....++++-++.-.+.|.++|++
T Consensus 95 ~~~~~~~~Gv~mi~k~l~~~L~k 117 (176)
T PRK14151 95 EAIKPMREGVELTLKMFQDTLKR 117 (176)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666666666666554
No 459
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=40.41 E-value=1.4e+02 Score=25.68 Aligned_cols=64 Identities=27% Similarity=0.244 Sum_probs=43.9
Q ss_pred hhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHH
Q 004879 75 SLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQG 154 (725)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (725)
.|..|+.+|++++..+-.+++... .-...|-+||.+..++|.+ .-.+|..|-++++.|+.
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~---~~~k~L~~ERd~~~~~l~~-----------------a~~e~~~Lk~E~e~L~~ 61 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHE---IENKRLRRERDSAERQLGD-----------------AYEENNKLKEENEALRK 61 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHH
Confidence 577888888888888877765443 3445666788777666654 23456677788888777
Q ss_pred HHHH
Q 004879 155 LLAK 158 (725)
Q Consensus 155 ~~~~ 158 (725)
-|+.
T Consensus 62 el~~ 65 (69)
T PF14197_consen 62 ELEE 65 (69)
T ss_pred HHHH
Confidence 6654
No 460
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=40.40 E-value=5.7e+02 Score=28.64 Aligned_cols=140 Identities=21% Similarity=0.194 Sum_probs=72.6
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhH
Q 004879 66 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDL 145 (725)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (725)
|.++.==|..=+.||.+--..-+-|.+++..+.|.||-+. +=|.+++..-.|+
T Consensus 49 iss~gwff~i~~re~qlk~aa~~llq~kirk~~e~~eglr---~i~es~~e~q~e~------------------------ 101 (401)
T PF06785_consen 49 ISSLGWFFAIGRREKQLKTAAGQLLQTKIRKITEKDEGLR---KIRESVEERQQES------------------------ 101 (401)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccHHHH---HHHHHHHHHHHHH------------------------
Confidence 3344444555566776555566677888888888888443 3344444332222
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHh--HHHHHHHHHHHHHHHhhhchH
Q 004879 146 YEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQ--YNELMQQKMKLLEERLQRSDE 223 (725)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 223 (725)
+.||..=++..+|--++..|+-+- ..+.++||+.+... --|++|- -++-++|....+||+-+.+++
T Consensus 102 ----~qL~~qnqkL~nqL~~~~~vf~k~---k~~~q~LE~li~~~-----~EEn~~lqlqL~~l~~e~~Ekeeesq~Lnr 169 (401)
T PF06785_consen 102 ----EQLQSQNQKLKNQLFHVREVFMKT---KGDIQHLEGLIRHL-----REENQCLQLQLDALQQECGEKEEESQTLNR 169 (401)
T ss_pred ----HHHHHhHHHHHHHHHHHHHHHHHh---cchHHHHHHHHHHH-----HHHHHHHHHhHHHHHHHHhHhHHHHHHHHH
Confidence 122222222223333333233221 12233444443322 2222221 122345556667777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 004879 224 EIHSYVQLYQESVKEFQDTLH 244 (725)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~ 244 (725)
|...-+.-.|.+-+|.|.|+.
T Consensus 170 ELaE~layqq~L~~eyQatf~ 190 (401)
T PF06785_consen 170 ELAEALAYQQELNDEYQATFV 190 (401)
T ss_pred HHHHHHHHHHHHHHHhhcccc
Confidence 888777777777777777654
No 461
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=40.06 E-value=1.2e+02 Score=36.83 Aligned_cols=70 Identities=14% Similarity=0.231 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhHhhhhhHHHhHHH--HHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhh
Q 004879 175 ELRKKVDKLEESLDEANIYKLSSEK--MQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHS 245 (725)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (725)
+..++|++.-+++. ..+.+..... -.+...-+.+++...+..++....+...+.+++...+..-...|+.
T Consensus 201 ~~~~~v~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~ 272 (660)
T COG1269 201 EDLDKVSKILNELG-FELYEVPEFDGGPSELISELEEVIAEIQDELESLRSELEALAEKIAEELLAVREILEI 272 (660)
T ss_pred cchHHHHHHHHhCC-cEEeeccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666552 2222222111 1112233445555555557778888888888888887766665544
No 462
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=40.02 E-value=4.3e+02 Score=27.13 Aligned_cols=89 Identities=22% Similarity=0.337 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHhh----hhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhc
Q 004879 146 YEKVENLQGLLAKATKQADQAISVLQ----QNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRS 221 (725)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (725)
.+.|.+|+..|-+..++...+---+. +-+.+++++.+|+...+..+.-+ + +-+++++..++..++..
T Consensus 67 ~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~e--R-------eeL~~kL~~~~~~l~~~ 137 (194)
T PF15619_consen 67 NEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAE--R-------EELQRKLSQLEQKLQEK 137 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh--H-------HHHHHHHHHHHHHHHHH
Confidence 46667777777665554433322222 22233444444444433333332 2 23467777777777777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 004879 222 DEEIHSYVQLYQESVKEFQDTL 243 (725)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~ 243 (725)
+..|..+-...+-.-+.|+.-|
T Consensus 138 ~~ki~~Lek~leL~~k~~~rql 159 (194)
T PF15619_consen 138 EKKIQELEKQLELENKSFRRQL 159 (194)
T ss_pred HHHHHHHHHHHHHHhhHHHHHH
Confidence 7777777666666666666543
No 463
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=39.77 E-value=35 Score=36.26 Aligned_cols=34 Identities=35% Similarity=0.537 Sum_probs=26.9
Q ss_pred CeEEEEcCccCCCCCCCcHH--HHHHHHHHHHHHCCCeEEEE
Q 004879 333 LHVIHIAAEMAPVAKVGGLG--DVVAGLGKALQKKGHLVEIV 372 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg--~vV~~LaraL~~~GHeV~VI 372 (725)
|+++.|.. ..||+| +++..|+.+|++.|..|.+|
T Consensus 1 M~~iai~s------~kGGvG~TTltAnLA~aL~~~G~~VlaI 36 (243)
T PF06564_consen 1 MKVIAIVS------PKGGVGKTTLTANLAWALARLGESVLAI 36 (243)
T ss_pred CcEEEEec------CCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 77777765 246665 56778999999999999999
No 464
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=39.17 E-value=2.4e+02 Score=34.81 Aligned_cols=133 Identities=20% Similarity=0.205 Sum_probs=94.3
Q ss_pred hhHHHHHHhhhhhHHhhH---------HHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhh
Q 004879 101 DERVVMLEMERSSLESSL---------KELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQ 171 (725)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (725)
+|..-.|.++++.+-..| .+++.++..-+.=......++.+-++|=++.++|..+|+++-+---++.-+ .
T Consensus 688 ~EEk~~L~~~~~~~~~Wleed~~~~~t~~~~ek~a~L~~l~~~~~~R~ee~kq~pe~l~~l~~~l~~s~~~l~~~~~~-~ 766 (902)
T KOG0104|consen 688 EEEKKILKKKVSLLMDWLEEDGSQTPTEMLTEKLAELKKLETSKNFREEERKQFPEELEALKNLLNRSFSFLKQARNL-S 766 (902)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccc-c
Confidence 344455666666544443 346777777777778888889999999999999999999987666555422 3
Q ss_pred hhHH-----HHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHH---HHHHHHHHHHhhhchHHHHHHHHHHHH
Q 004879 172 QNQE-----LRKKVDKLEESLDEANIYKLSSEKMQQYNELM---QQKMKLLEERLQRSDEEIHSYVQLYQE 234 (725)
Q Consensus 172 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (725)
++.+ -...+|.|+.-+.+..+|.--..+.+...-.+ .-+++-+++..+.+++|.+-++++...
T Consensus 767 ~~~E~d~~ft~~e~~~L~k~i~~t~~W~~~~~~~~~k~~k~edp~~k~kei~~K~k~Ldrev~~~lnK~k~ 837 (902)
T KOG0104|consen 767 TWEEKDTIFTKTEIDTLEKVIAKTTAWLNDRLDLFEKKAKTEDPVLKVKEIEEKAKSLDREVLYLLNKLKI 837 (902)
T ss_pred ccchhccchhhhhHHHHHHHHHHhHHHhhhhHHHHHhhhcccCccccHHHHHHHHHhhHHHHHHHHHHhhc
Confidence 3322 23457899999999999988877665543332 346777888888888888888877643
No 465
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=39.12 E-value=2.5e+02 Score=34.72 Aligned_cols=74 Identities=18% Similarity=0.037 Sum_probs=55.4
Q ss_pred CCCEEEEeecCcCCCCHHHHHHHHHHhhcC------CcEEEEEcC---CCcccccH------------------------
Q 004879 631 RKPLVGCITRLVPQKGVHLIRHAIYRTLEL------GGQFILLGS---SPVPHIQV------------------------ 677 (725)
Q Consensus 631 ~~plV~fVGRL~~qKGvdlLieA~~~L~~~------~iqLVIvG~---Gp~~~le~------------------------ 677 (725)
++.+++++-|+..-||+..=+.|+.+++.. .+.++.+.. ++.+.++.
T Consensus 275 g~klilgvD~~d~~kg~~~Kl~a~e~~L~~~pe~~~kVvliqi~~~~~~~~~~v~~~k~~v~~~v~rIn~~f~~~~~~pV 354 (732)
T KOG1050|consen 275 GKKLILGVDRLDSIKGIQLKLLAFEQFLEEYPEWIDKVVLIQIENPKRTDGKEVEELKFCVSVHVRRINEKFGSASYQPV 354 (732)
T ss_pred CCceEecccccccccCchHHHHHHHHHHHhChhhhceEEEEEEecCCcccchHHHHHHHHhHhhhhhhhhccCCcccceE
Confidence 567999999999999999989999888752 233333332 22211110
Q ss_pred ------------HHHHHhcCeEEEcCCcccchHHHHHHc
Q 004879 678 ------------YPILLSSFSFLRKHIFNICNLYIKLGQ 704 (725)
Q Consensus 678 ------------~~iyAaADIfVlPS~~EpfGLv~LEAM 704 (725)
-.+|+.||++++-|.-++..++.+|..
T Consensus 355 ~~~~~~~~~~~l~a~~~Vaev~~v~s~rdGmnl~~~e~i 393 (732)
T KOG1050|consen 355 HSLLKDLPFLELLALYKVAEVCPVTSWRDGMNLVFLEYI 393 (732)
T ss_pred EEeeccCCHHHHhhhHHhhhheeecccccccchhhhHHH
Confidence 089999999999999999999999975
No 466
>PRK11020 hypothetical protein; Provisional
Probab=39.05 E-value=1.5e+02 Score=27.97 Aligned_cols=57 Identities=30% Similarity=0.345 Sum_probs=37.7
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHH---hHhhhhhHHHhHH
Q 004879 137 TLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEE---SLDEANIYKLSSE 198 (725)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 198 (725)
.++.|-+.|-++.+.++.-|+.|..+-|..++ . .+.+.+++|+. +|..-.-++++.|
T Consensus 2 ~~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i--~---qf~~E~~~l~k~I~~lk~~~~~~lske 61 (118)
T PRK11020 2 VEKNEIKRLSDRLDAIRHKLAAASLRGDAEKY--A---QFEKEKATLEAEIARLKEVQSQKLSKE 61 (118)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH--H---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888999999999999999888887743 2 34555555553 3333344444443
No 467
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=38.98 E-value=7.9e+02 Score=29.85 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=20.8
Q ss_pred ccCCCccchhcccCcccchhhHhhhhhhhh
Q 004879 50 NQNEPANEDLVLNNSEIHSFSKELDSLKTE 79 (725)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (725)
-+++|+++. ..+.+|.|+-+++.++.|
T Consensus 240 aq~nPlI~~---t~~ta~kLs~qldnv~~e 266 (657)
T KOG1854|consen 240 AQANPLITA---TKDTAHKLSNQLDNVKRE 266 (657)
T ss_pred hhcccchHH---HHHHHHHHHHHHHHHHHH
Confidence 456677653 467899999999999888
No 468
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=38.85 E-value=5.8e+02 Score=28.26 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=25.8
Q ss_pred HHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhh
Q 004879 114 LESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQAD 164 (725)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (725)
|-..++|||.-..+.-+-.--+-..+--...+-|.-.+|..=|++|.--|.
T Consensus 40 LsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeRELARaKV~aN 90 (351)
T PF07058_consen 40 LSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLERELARAKVSAN 90 (351)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 566777777665544333222222222222455555666666776654433
No 469
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=38.83 E-value=4.9e+02 Score=27.42 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=6.4
Q ss_pred HHHHHHHHHhHhhh
Q 004879 177 RKKVDKLEESLDEA 190 (725)
Q Consensus 177 ~~~~~~~~~~~~~~ 190 (725)
.++++|++.-++.+
T Consensus 149 ~k~~eK~~~K~~ka 162 (261)
T cd07648 149 PKEIEKAEAKLKKA 162 (261)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445554444443
No 470
>CHL00194 ycf39 Ycf39; Provisional
Probab=38.65 E-value=39 Score=36.33 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=23.4
Q ss_pred CCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 348 VGGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 348 vGGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
+||.|.+-..++++|.++||+|.+++..
T Consensus 6 tGatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 6 IGATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred ECCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 3777888888999999999999998744
No 471
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=38.36 E-value=36 Score=35.39 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 350 GLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 350 Glg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
|+|.+-..+|+.|.+.||+|.+|-..
T Consensus 7 G~G~vG~~va~~L~~~g~~Vv~Id~d 32 (225)
T COG0569 7 GAGRVGRSVARELSEEGHNVVLIDRD 32 (225)
T ss_pred CCcHHHHHHHHHHHhCCCceEEEEcC
Confidence 77899999999999999999999533
No 472
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=38.23 E-value=96 Score=34.57 Aligned_cols=61 Identities=30% Similarity=0.317 Sum_probs=32.0
Q ss_pred CcccchhhHhhhhhhh------hhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhh
Q 004879 63 NSEIHSFSKELDSLKT------ENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESK 124 (725)
Q Consensus 63 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (725)
.+....+++|...|.+ |=...++||+..++.|.+- ...|-..+.+.|-..+++.+.+||.+
T Consensus 32 ~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~-~D~em~ema~~Ei~~~~~~~~~le~~ 98 (363)
T COG0216 32 PDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEE-KDPEMREMAEEEIKELEAKIEELEEE 98 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666655543 3334555666666666554 22233445555555555555555544
No 473
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=38.15 E-value=58 Score=30.87 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=30.4
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
|||+.|+...- +.|-...++..+.+.+.+.|++++++-+.
T Consensus 1 Mkilii~gS~r---~~~~t~~l~~~~~~~l~~~g~e~~~i~l~ 40 (152)
T PF03358_consen 1 MKILIINGSPR---KNSNTRKLAEAVAEQLEEAGAEVEVIDLA 40 (152)
T ss_dssp -EEEEEESSSS---TTSHHHHHHHHHHHHHHHTTEEEEEEECT
T ss_pred CEEEEEECcCC---CCCHHHHHHHHHHHHHHHcCCEEEEEecc
Confidence 89999987432 34666777777888998899999999544
No 474
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=38.10 E-value=6.3e+02 Score=31.20 Aligned_cols=58 Identities=17% Similarity=0.324 Sum_probs=28.0
Q ss_pred HhhhhHHHHHHHHHHHHhHhhhhhHHHhHH--HHHhHHHHHHHHHHHHHHHhhhchHHHHH
Q 004879 169 VLQQNQELRKKVDKLEESLDEANIYKLSSE--KMQQYNELMQQKMKLLEERLQRSDEEIHS 227 (725)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (725)
+.+....|.++++++-.++.. ..-.++.. +..+-+..++.++..|..+++..+..+..
T Consensus 605 a~d~Qe~L~~R~~~vl~~l~~-~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 605 AKDKQEKLMKRVDRVLQLLNS-QLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777777777666643 12222221 11122444555555555555554444433
No 475
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=37.87 E-value=50 Score=33.13 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=27.9
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVL 373 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VIt 373 (725)
||++.|+.-- ..-|-.+++..|+.+|++.|+.|.+|=
T Consensus 17 ~kvI~v~s~k----gG~GKTt~a~~LA~~la~~G~rVllID 53 (204)
T TIGR01007 17 IKVLLITSVK----PGEGKSTTSANIAVAFAQAGYKTLLID 53 (204)
T ss_pred CcEEEEecCC----CCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 7888887621 122456688899999999999998883
No 476
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=37.76 E-value=31 Score=37.55 Aligned_cols=41 Identities=24% Similarity=0.237 Sum_probs=32.3
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCC
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 376 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y 376 (725)
|||+++-. |.....--.+....|..+.+++||+|.++.|..
T Consensus 1 m~~~~~~~---~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~ 41 (312)
T TIGR01380 1 LKVAFQMD---PIESINIGKDTTFALMEEAQKRGHELFFYEPGD 41 (312)
T ss_pred CeEEEEeC---CHHHCCCCcChHHHHHHHHHHcCCEEEEEehhh
Confidence 78888854 444444446788899999999999999999873
No 477
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=37.61 E-value=61 Score=33.37 Aligned_cols=36 Identities=14% Similarity=-0.004 Sum_probs=28.6
Q ss_pred CCeEEEEcCccCCCCCCCcHHHHH--HHHHHHHHHCCCeEEEEeeC
Q 004879 332 GLHVIHIAAEMAPVAKVGGLGDVV--AGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 332 ~MkILhIs~E~~P~~kvGGlg~vV--~~LaraL~~~GHeV~VItP~ 375 (725)
++||+.-. +||.|.+- .+|.+.|.+.||+|+|++..
T Consensus 5 ~k~IllgV--------TGsiaa~k~a~~lir~L~k~G~~V~vv~T~ 42 (196)
T PRK08305 5 GKRIGFGL--------TGSHCTYDEVMPEIEKLVDEGAEVTPIVSY 42 (196)
T ss_pred CCEEEEEE--------cCHHHHHHHHHHHHHHHHhCcCEEEEEECH
Confidence 45776553 58888875 79999999999999999754
No 478
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=37.45 E-value=4.8e+02 Score=32.93 Aligned_cols=108 Identities=19% Similarity=0.090 Sum_probs=80.3
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhH
Q 004879 66 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDL 145 (725)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (725)
+|....+|.-.-+|+.++..|+..++.+- .+.+.-||-+.....+.+.+|-.+++.+..|---.. .
T Consensus 703 ~~~~~~~l~~~~~~ra~~~~d~~~~r~~~------~k~l~~L~~~~~~~~~~i~s~~~~i~~a~~d~~~~~--------~ 768 (913)
T KOG0244|consen 703 ALNPRGTLLYAAEERAVRMWDLKRLRSEG------KKLLGSLEPVMELTSDQISSMQDLIITASKDERIKM--------R 768 (913)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhhhHHHHHHHHHHHHhHHhhhcccccchhHHH--------H
Confidence 67777888888999999999999998876 678888999999999999999999988877643222 7
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHH
Q 004879 146 YEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYK 194 (725)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (725)
|+.|.++-. |. -..+. ..+.--.++..+++++.++++..|..
T Consensus 769 w~~v~t~~~----ak-~~~~~--~~~~~~~~r~~~~~~~~~~re~~~~~ 810 (913)
T KOG0244|consen 769 WEAVGTLSE----AK-NFEPY--LYDGIVALRIQGDNLFSGSREKGIKK 810 (913)
T ss_pred Hhccccccc----ch-hhhHH--HHHHHHHHHHHHHHHhhhhhhhhhhH
Confidence 888776543 11 11111 23333467888999999999887654
No 479
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=37.44 E-value=2.7e+02 Score=25.48 Aligned_cols=67 Identities=22% Similarity=0.316 Sum_probs=44.8
Q ss_pred HhhhhHHHHHHHHHHHHhHhhhhhHHHhHH--------------H-HHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q 004879 169 VLQQNQELRKKVDKLEESLDEANIYKLSSE--------------K-MQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQ 233 (725)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (725)
-+=+..++..|+|.|+...+++...+.... . .-++....++.+..|..++++...++..+.+.++
T Consensus 25 ~I~~Er~v~~kLneLd~Li~eA~~r~~~~~~~~~~~~~~l~P~~~i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~ 104 (109)
T PF03980_consen 25 EILEERDVVEKLNELDKLIEEAKERKNSGEREKPVWRHSLTPEEDIRAHLAPYKKKEREQLNARLQELEEENEALAEEIQ 104 (109)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhHhccccCCCCCCCCCChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556788899999888888877765211 1 2234445566667777788888888887776665
Q ss_pred HH
Q 004879 234 ES 235 (725)
Q Consensus 234 ~~ 235 (725)
..
T Consensus 105 ~~ 106 (109)
T PF03980_consen 105 EQ 106 (109)
T ss_pred Hh
Confidence 54
No 480
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=37.23 E-value=3e+02 Score=34.12 Aligned_cols=62 Identities=18% Similarity=0.362 Sum_probs=47.1
Q ss_pred hccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHH
Q 004879 133 AKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYK 194 (725)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (725)
.++..++.|+..|.+++..++.-++++.....+++.+|.+=+..+.++..-.++|.|++=|-
T Consensus 70 ~ev~~l~~ea~~L~~~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~~w~ 131 (766)
T PF10191_consen 70 REVDRLRQEAASLQEQMASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEADNWS 131 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34566778888888888888877777766677777788877777777777777888777664
No 481
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=37.16 E-value=5.3e+02 Score=27.27 Aligned_cols=190 Identities=14% Similarity=0.196 Sum_probs=0.0
Q ss_pred hhhhhHHHhHHHHHHHHHHHhhcccCcccchhhhhccCCCccchhcccCcccchhhH-hhhhhhhhhccchhHHHHHHHH
Q 004879 15 QEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSK-ELDSLKTENLSLKNDIKVLKAE 93 (725)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 93 (725)
..+.-++-||.||.+|-.-+..- +.+...+....-.+...++.|+. |.+ ..|...
T Consensus 26 ~~k~yi~~Le~~Lk~l~k~~~~l-----------v~~rkela~~~~efa~s~~~L~~~E~~-------------~~ls~~ 81 (234)
T cd07664 26 EKQQQFENLDQQLRKLHASVESL-----------VCHRKELSANTAAFAKSAAMLGNSEDH-------------TALSRA 81 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHcCccc-------------chHHHH
Q ss_pred hhhhhhhhhHHHHHHhhhhh---------HHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhh
Q 004879 94 LNSVKDADERVVMLEMERSS---------LESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQAD 164 (725)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (725)
|+.++++.+++..+..+.+. |+.-++.+.|=-.+...-+--+...+.=+.+|-.|=+++..|.. +++.|
T Consensus 82 l~~laev~~ki~~~~~~qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~~--~~k~d 159 (234)
T cd07664 82 LSQLAEVEEKIDQLHQDQAFADFYLFSELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQY--ANKPD 159 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCchh
Q ss_pred hHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhh
Q 004879 165 QAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLH 244 (725)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (725)
+.-..-.+-++++++++..+...++ |-..++.-+..++. .--.+..+-+..|-.+.-+.|.-+-
T Consensus 160 K~~~~~~ev~~~e~~~~~a~~~fe~-------------Is~~~k~El~rFe~---er~~dfk~~l~~fles~ie~qke~i 223 (234)
T cd07664 160 KLQQAKDEIKEWEAKVQQGERDFEQ-------------ISKTIRKEVGRFEK---ERVKDFKTVIIKYLESLVQTQQQLI 223 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hh
Q 004879 245 SL 246 (725)
Q Consensus 245 ~~ 246 (725)
++
T Consensus 224 e~ 225 (234)
T cd07664 224 KY 225 (234)
T ss_pred HH
No 482
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=37.13 E-value=4e+02 Score=25.85 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHH
Q 004879 147 EKVENLQGLLAKATKQADQAISVLQQNQEL 176 (725)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (725)
|.+-.||+.|+....+.-.++-+|+++.+.
T Consensus 3 DrlTQLQd~ldqL~~~f~~si~~l~~~a~~ 32 (144)
T PF11221_consen 3 DRLTQLQDCLDQLAEQFCNSIGYLQRDAPP 32 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Confidence 567778888888888888888888877554
No 483
>PRK10037 cell division protein; Provisional
Probab=36.71 E-value=44 Score=34.85 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=27.0
Q ss_pred CeEEEEcCccCCCCCCCcHHHHH--HHHHHHHHHCCCeEEEE
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVV--AGLGKALQKKGHLVEIV 372 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV--~~LaraL~~~GHeV~VI 372 (725)
|+|+-++. ..||+|... ..|+.+|+++|+.|.||
T Consensus 1 ~~~iav~n------~KGGvGKTT~a~nLA~~La~~G~rVLlI 36 (250)
T PRK10037 1 MAILGLQG------VRGGVGTTSITAALAWSLQMLGENVLVI 36 (250)
T ss_pred CcEEEEec------CCCCccHHHHHHHHHHHHHhcCCcEEEE
Confidence 67776665 258887654 66899999999999998
No 484
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=36.66 E-value=7.8e+02 Score=29.09 Aligned_cols=124 Identities=19% Similarity=0.259 Sum_probs=58.5
Q ss_pred hhhHHhhHHHHH-hhhhcchhhhhccccc---hhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHh
Q 004879 111 RSSLESSLKELE-SKLSISQEDVAKLSTL---KVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEES 186 (725)
Q Consensus 111 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (725)
++.|..-+.||. ..-...+..+....|- .+.|..+.+-+.+++.+++..|+.--+=...+...+ +-||+|-++
T Consensus 364 ~aFL~qRl~El~~~~~~~l~~~~~~~ap~~lq~~t~~~i~~ml~~V~~ii~~Lt~~~~~~L~~Ik~Sp---rYvdrl~~~ 440 (507)
T PF05600_consen 364 EAFLKQRLYELSNEESSSLSFSQFQNAPSILQQQTAESIEEMLSAVEEIISQLTNPRTQHLFMIKSSP---RYVDRLVES 440 (507)
T ss_pred HHHHHHHHHHhcccccchHHHHHhhhccHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcCH---HHHHHHHHH
Confidence 445555556665 2222222222222221 345666777777888888888876655544444444 345555555
Q ss_pred HhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhh
Q 004879 187 LDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLH 244 (725)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (725)
|+.-- -..++.++-...+++|...+-+.+.++......+++. .++-|+-++
T Consensus 441 L~qk~---~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~----Tr~Lq~~iE 491 (507)
T PF05600_consen 441 LQQKL---KQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVER----TRELQKQIE 491 (507)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHH
Confidence 54310 0111222222344444444433355555444444443 444454443
No 485
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=36.60 E-value=4e+02 Score=25.68 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=24.8
Q ss_pred hhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHH
Q 004879 162 QADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSE 198 (725)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (725)
+++.|-..|.....++..++...+-++...-...++.
T Consensus 53 ~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~ 89 (126)
T PF09403_consen 53 EAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKD 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHH
Confidence 5556666677777777777777776666666666664
No 486
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=36.57 E-value=7.1e+02 Score=28.58 Aligned_cols=19 Identities=16% Similarity=0.415 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHhHhhhh
Q 004879 173 NQELRKKVDKLEESLDEAN 191 (725)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~ 191 (725)
..+++.+++.++..+.++.
T Consensus 238 ~~~~~~~i~~l~~~i~~~~ 256 (457)
T TIGR01000 238 LATIQQQIDQLQKSIASYQ 256 (457)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445566666666655443
No 487
>TIGR03090 SASP_tlp small, acid-soluble spore protein tlp. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. Although previously designated tlp (thioredoxin-like protein), the B. subtilis protein was shown to be a minor small acid-soluble spore protein SASP, unique to spores. The motif E[VIL]XDE near the C-terminus probably represents at a germination protease cleavage site.
Probab=36.26 E-value=1.4e+02 Score=25.82 Aligned_cols=52 Identities=19% Similarity=0.353 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHH
Q 004879 146 YEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEE 216 (725)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (725)
-+-||.||.++..+..-.+ .-+++|+..+ +++.+..+.|-+-|..|..+++.
T Consensus 7 sDNVEkLQ~mi~nTieN~~-----------------eAee~l~~~~--el~~~~~~~i~eKN~RR~eSi~~ 58 (70)
T TIGR03090 7 SDNVEKLQQMIDNTIENME-----------------EANEYIEAHA--ELSEEEKQRIEEKNERREQSIDG 58 (70)
T ss_pred cchHHHHHHHHHHHHHHHH-----------------HHHHHHHHhc--cCCHHHHHHHHHHHHhHHHHHHH
Confidence 3568889988887554443 3466777666 67777777788888877776665
No 488
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.80 E-value=8.3e+02 Score=29.19 Aligned_cols=76 Identities=18% Similarity=0.229 Sum_probs=45.3
Q ss_pred CcccchhhHhhhhhhhhhccchhHHHHHHHHhhh---hhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccch
Q 004879 63 NSEIHSFSKELDSLKTENLSLKNDIKVLKAELNS---VKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLK 139 (725)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (725)
++.+-++--.|.+=+||---|..|+..-+..+++ -.++++++..||+|++-.+ ..+.-+|+.|-.+-++-
T Consensus 379 ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~~pe~~d~i~~le~e~~~y~-------de~~kaqaevdrlLeil 451 (654)
T KOG4809|consen 379 DSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARMNPEFADQIKQLEKEASYYR-------DECGKAQAEVDRLLEIL 451 (654)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcChhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 4444455555556666655555555544444433 2467777888888776543 33445666777776666
Q ss_pred hhhhhH
Q 004879 140 VECKDL 145 (725)
Q Consensus 140 ~~~~~~ 145 (725)
-||++.
T Consensus 452 kevene 457 (654)
T KOG4809|consen 452 KEVENE 457 (654)
T ss_pred HHHHhh
Confidence 676665
No 489
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=35.57 E-value=48 Score=34.16 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=28.0
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCC
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCM 379 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l 379 (725)
|||.+|+. +| .+-..+.+...++||+|+.|+..-..+
T Consensus 1 mKIaiIgA-------sG---~~Gs~i~~EA~~RGHeVTAivRn~~K~ 37 (211)
T COG2910 1 MKIAIIGA-------SG---KAGSRILKEALKRGHEVTAIVRNASKL 37 (211)
T ss_pred CeEEEEec-------Cc---hhHHHHHHHHHhCCCeeEEEEeChHhc
Confidence 89999976 33 444567888889999999998664444
No 490
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=35.35 E-value=90 Score=37.13 Aligned_cols=89 Identities=12% Similarity=-0.003 Sum_probs=60.2
Q ss_pred HHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhc--CCcEEEEEcCCCcccccH--------------------
Q 004879 620 RKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVPHIQV-------------------- 677 (725)
Q Consensus 620 Rk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~--~~iqLVIvG~Gp~~~le~-------------------- 677 (725)
|..+||++ +..+++|.++ +.|-...+.+-+-++++ +|-.|+|.|.|+.+.+..
T Consensus 421 R~~lglp~---~avVf~c~~n--~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p 495 (620)
T COG3914 421 RAQLGLPE---DAVVFCCFNN--YFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLP 495 (620)
T ss_pred hhhcCCCC---CeEEEEecCC--cccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecC
Confidence 56789984 5555666655 45656677777777765 578899988887653211
Q ss_pred -------HHHHHhcCeEEEcCCcccchHHHHHHcCCCccccCCC
Q 004879 678 -------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNNC 714 (725)
Q Consensus 678 -------~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V~~~~ 714 (725)
..-|..||+++=.--| +=+.|.+||+=++.||++-.
T Consensus 496 ~~~~~~h~a~~~iADlvLDTyPY-~g~TTa~daLwm~vPVlT~~ 538 (620)
T COG3914 496 PAPNEDHRARYGIADLVLDTYPY-GGHTTASDALWMGVPVLTRV 538 (620)
T ss_pred CCCCHHHHHhhchhheeeecccC-CCccchHHHHHhcCceeeec
Confidence 0789999999865555 33678999986666665443
No 491
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.28 E-value=7.3e+02 Score=29.37 Aligned_cols=159 Identities=24% Similarity=0.248 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhhcccCcccchhhhhccCCCccchhcccCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhh
Q 004879 23 LEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADE 102 (725)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (725)
+++.++||+-|+-+...++.+... .-+...-.+-++..-+++- ||-.+++.-+.|.....- -
T Consensus 170 ~~~~~~kl~ie~e~~~h~~qq~e~--------------~l~t~~a~~e~~nrh~~er---lk~~~~s~~e~l~kl~~E-q 231 (613)
T KOG0992|consen 170 IESVAEKLRIELEQLRHSTQQEEN--------------LLTTTLAAVEEENRHLKER---LKIVEESRLESLGKLNSE-Q 231 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HhccchHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhHH-H
Q ss_pred HHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHH
Q 004879 103 RVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDK 182 (725)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (725)
.+-.++.||.+|+.-+..|--.++.-.- .|.....++..+-..+..+..+ .--+-|+.|.|
T Consensus 232 Qlq~~~~ehkllee~~~rl~~~~s~Veg-------------S~S~~~l~~ek~r~~lee~~~~------e~~e~rk~v~k 292 (613)
T KOG0992|consen 232 QLQALIREHKLLEEHLERLHLQLSDVEG-------------SWSGQNLALEKQRSRLEEQVAE------ETTEKRKAVKK 292 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc-------------ccchhHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Q ss_pred HHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhh
Q 004879 183 LEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQ 219 (725)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (725)
++....+..-.-+--++.+...-.|..+.+++|+ ++
T Consensus 293 ~~~l~q~~~~~~~eL~K~kde~~~n~~~~~lie~-lq 328 (613)
T KOG0992|consen 293 RDDLIQSRKQVSFELEKAKDEIKQNDDKVKLIEE-LQ 328 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH-HH
No 492
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=34.90 E-value=1.3e+02 Score=30.78 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=15.9
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhh
Q 004879 68 SFSKELDSLKTENLSLKNDIKVLKAELNSV 97 (725)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (725)
.+-..++.|+.+...++..|..++.++...
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555444
No 493
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.67 E-value=8e+02 Score=28.64 Aligned_cols=43 Identities=26% Similarity=0.186 Sum_probs=26.6
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccc
Q 004879 87 IKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLS 136 (725)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (725)
++.+..+..++ ..|+.|+.....+++.||++-+.+.+-.+++-
T Consensus 233 ~eel~eq~een-------eel~ae~kqh~v~~~ales~~sq~~e~~selE 275 (521)
T KOG1937|consen 233 VEELTEQNEEN-------EELQAEYKQHLVEYKALESKRSQFEEQNSELE 275 (521)
T ss_pred HHHHHhhhhhH-------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 55555554443 45566677777777777777766666555544
No 494
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=34.66 E-value=5.4e+02 Score=26.70 Aligned_cols=51 Identities=14% Similarity=0.253 Sum_probs=23.7
Q ss_pred hhHhhhhhhhhhccchhHHHHHHHHhh-hh-hhhhhHHHHHHhhhhhHHhhHH
Q 004879 69 FSKELDSLKTENLSLKNDIKVLKAELN-SV-KDADERVVMLEMERSSLESSLK 119 (725)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~ 119 (725)
+...++.++.|.-.+-+.=..+-..|. .+ .....+...++++|..++....
T Consensus 58 l~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~ 110 (236)
T cd07651 58 LKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQSHME 110 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666665555444444444443 22 2333444444454444433333
No 495
>PRK10869 recombination and repair protein; Provisional
Probab=34.59 E-value=8.5e+02 Score=28.95 Aligned_cols=23 Identities=9% Similarity=0.157 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHH
Q 004879 145 LYEKVENLQGLLAKATKQADQAI 167 (725)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~ 167 (725)
+.+.++.+...|+.+....++..
T Consensus 266 ~~~~l~~~~~~l~~~~~~l~~~~ 288 (553)
T PRK10869 266 VLDMLEEALIQIQEASDELRHYL 288 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445554444444444444433
No 496
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=34.51 E-value=7.9e+02 Score=28.55 Aligned_cols=75 Identities=20% Similarity=0.268 Sum_probs=45.7
Q ss_pred HHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhh
Q 004879 167 ISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHS 245 (725)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (725)
..+..++..++++++...+..+..+--+.-.- -...+.|+|--- |+.|+.+-+....+|+.++.....|+...-.
T Consensus 362 ~~l~~~e~~l~~~l~~~r~~~~~~~q~~E~~L--d~~~d~lRq~s~--ee~L~~~l~~~~~~Ld~Ie~~Y~~fh~~~~~ 436 (473)
T PF14643_consen 362 KKLSKQEEELEKRLEQCREKHDQENQEKEAKL--DIALDRLRQASS--EEKLKEHLEKALDLLDQIEEEYEDFHKKQTA 436 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHhCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777666665555544433222 224444444332 6667777788888888888888888874433
No 497
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=34.42 E-value=5.5e+02 Score=27.69 Aligned_cols=144 Identities=16% Similarity=0.182 Sum_probs=0.0
Q ss_pred hhhhhhhhhccchhHHHHHHHHhh----hhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHH
Q 004879 72 ELDSLKTENLSLKNDIKVLKAELN----SVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYE 147 (725)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (725)
.+...+..-......+..++..+. ........+..+..+...+++.++..+.++..++.+......|...---=-.
T Consensus 56 ~~~~a~a~l~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~iS~~ 135 (327)
T TIGR02971 56 ELDVARTQLDEAKARLAQVRAGAKKGEIAAQRAARAAAKLFKDVAAQQATLNRLEAELETAQREVDRYRSLFRDGAVSAS 135 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHH
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhh--hHHHhHHHHHhHHHHHHHHHHHHHHHhhhc
Q 004879 148 KVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEAN--IYKLSSEKMQQYNELMQQKMKLLEERLQRS 221 (725)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (725)
.+++.+.-+..+..+.+++..-+. ..++..+..+.... +.+.-.+..+.-....+.++...+.+++.+
T Consensus 136 ~~d~~~~~~~~a~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~l~~~ 205 (327)
T TIGR02971 136 DLDSKALKLRTAEEELEEALASRS------EQIDGARAALASLAEEVRETDVDLAQAEVKSALEAVQQAEALLELT 205 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 498
>PF06401 Alpha-2-MRAP_C: Alpha-2-macroglobulin RAP, C-terminal domain ; InterPro: IPR010483 The alpha-2-macroglobulin receptor-associated protein (RAP) is a intracellular glycoprotein that binds to the 2-macroglobulin receptor and other members of the low density lipoprotein receptor family. The protein inhibits binding of all currently known ligands of these receptors []. Two different studies have provided conflicting domain boundaries.; GO: 0008201 heparin binding, 0050750 low-density lipoprotein particle receptor binding, 0005783 endoplasmic reticulum; PDB: 2FCW_A 2P03_A 2FTU_A 2P01_A.
Probab=34.41 E-value=5.7e+02 Score=26.86 Aligned_cols=134 Identities=24% Similarity=0.350 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhc---------------ccCcccchhhhhccCCCccchhcccCcccchhhHhhhhhhhhhccchhHHHH
Q 004879 25 DQLQKLQHELTHR---------------GVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKV 89 (725)
Q Consensus 25 ~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (725)
++|.+|..|+.+- +..+.+...+..++..|. .-+.+..--+.||+-+..+++..+.
T Consensus 24 eEL~~Lk~Ef~hHqeKi~eY~~LL~~~~~~~~~~~N~i~~~~~~~~---------k~~~~~~k~~~Lk~k~r~i~~~~dr 94 (214)
T PF06401_consen 24 EELDKLKEEFQHHQEKIDEYNSLLETLSRTEEIHENSISPNEMNPE---------KEEQLHEKHNELKEKHREINDGYDR 94 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSS---S-TTTT----------SSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCccccchh---------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhhhh-----hhHHHHH----------HhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHH
Q 004879 90 LKAELNSVKDA-----DERVVML----------EMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQG 154 (725)
Q Consensus 90 ~~~~~~~~~~~-----~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (725)
|..-....... +.+|..| ..|-.+|.-.|.-.|+|+ +|...++.
T Consensus 95 L~r~~~~g~~~~~eF~epkV~~LW~~A~~~nFT~~ELeSlkeEL~HfE~rl---------------------~K~~H~~~ 153 (214)
T PF06401_consen 95 LRRVSHQGPNSDKEFIEPKVQGLWKLAQNANFTEDELESLKEELKHFEKRL---------------------EKHRHYQE 153 (214)
T ss_dssp HHHHHHTSSSSS-SSSSTTHHHHHHHHCTTT--HHHHHHHHHHHHHHHHHH---------------------HHHHHHHH
T ss_pred HHHHHhcCCCcccccccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH---------------------HHHHHHHH
Q ss_pred HHHHHhhhhh----------------hHHHHhhhhHHHHHHHHHHHHhHh
Q 004879 155 LLAKATKQAD----------------QAISVLQQNQELRKKVDKLEESLD 188 (725)
Q Consensus 155 ~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~ 188 (725)
.|..+..+.. ...+.-+...++-+||.||...|+
T Consensus 154 el~~~~~k~~~ve~~g~~~~~~~~~e~~~~leek~Kk~~~KV~Kl~~dLe 203 (214)
T PF06401_consen 154 ELELSHEKLKHVESLGDEEHFDRKSEKYKTLEEKIKKLGRKVKKLHQDLE 203 (214)
T ss_dssp HHHHHHHHHHHHHTTSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhcCcHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=34.34 E-value=59 Score=27.70 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=12.4
Q ss_pred HHhhHHHHHhhhhcchhhhhccc
Q 004879 114 LESSLKELESKLSISQEDVAKLS 136 (725)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~ 136 (725)
++..|.+||.|++-....+.+|+
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln 24 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELN 24 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666655444444333
No 500
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=34.18 E-value=1.6e+02 Score=27.50 Aligned_cols=56 Identities=34% Similarity=0.560 Sum_probs=0.0
Q ss_pred hhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHh
Q 004879 109 MERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLD 188 (725)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (725)
+.+..|=.++.+||.++. .+.++++.|+..+.. ++.+|+.|+-.-+.|.+-|.
T Consensus 1 Mdk~~l~~~l~~le~~l~-----------------~l~~~~~~LK~~~~~----------l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 1 MDKKELFDRLDQLEQQLG-----------------QLLEELEELKKQLQE----------LLEENARLRIENEHLRERLE 53 (107)
T ss_pred CchHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Q ss_pred hhh
Q 004879 189 EAN 191 (725)
Q Consensus 189 ~~~ 191 (725)
+..
T Consensus 54 ~~~ 56 (107)
T PF06156_consen 54 ELE 56 (107)
T ss_pred HHh
Done!