Query 004879
Match_columns 725
No_of_seqs 202 out of 2031
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 08:38:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004879.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004879hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vue_A GBSS-I, granule-bound s 100.0 6.1E-58 2.1E-62 521.8 33.3 372 328-709 5-427 (536)
2 1rzu_A Glycogen synthase 1; gl 100.0 6.6E-39 2.3E-43 354.4 24.5 360 333-710 1-392 (485)
3 2qzs_A Glycogen synthase; glyc 100.0 1.9E-38 6.4E-43 350.8 23.9 359 333-710 1-393 (485)
4 3fro_A GLGA glycogen synthase; 100.0 4.8E-36 1.7E-40 323.1 31.2 330 331-716 1-364 (439)
5 3nb0_A Glycogen [starch] synth 100.0 1.2E-30 4.1E-35 300.3 20.6 297 334-670 29-380 (725)
6 3c48_A Predicted glycosyltrans 100.0 3.2E-29 1.1E-33 272.1 28.0 305 329-716 17-359 (438)
7 2r60_A Glycosyl transferase, g 100.0 4.3E-29 1.5E-33 277.7 24.9 319 332-711 7-386 (499)
8 3s28_A Sucrose synthase 1; gly 100.0 1.2E-28 4.2E-33 292.3 19.4 353 307-710 257-691 (816)
9 3okp_A GDP-mannose-dependent a 100.0 1E-27 3.5E-32 255.0 23.9 282 330-718 2-315 (394)
10 2iw1_A Lipopolysaccharide core 99.9 1.3E-27 4.3E-32 252.9 16.7 279 333-717 1-305 (374)
11 2jjm_A Glycosyl transferase, g 99.9 3.7E-26 1.3E-30 245.4 27.5 283 333-717 14-319 (394)
12 2iuy_A Avigt4, glycosyltransfe 99.9 2.9E-25 1E-29 233.9 19.5 234 330-718 1-277 (342)
13 2x6q_A Trehalose-synthase TRET 99.9 4.3E-25 1.5E-29 238.8 18.2 272 330-711 38-343 (416)
14 2c4m_A Glycogen phosphorylase; 99.9 1.4E-24 4.9E-29 253.1 21.3 256 444-704 262-637 (796)
15 1l5w_A Maltodextrin phosphoryl 99.9 2.4E-24 8.1E-29 251.3 22.9 252 444-704 272-647 (796)
16 2gek_A Phosphatidylinositol ma 99.9 1.5E-24 5E-29 232.0 18.4 270 330-711 18-311 (406)
17 3oy2_A Glycosyltransferase B73 99.9 2.4E-23 8.4E-28 224.5 23.0 261 333-711 1-301 (413)
18 2x0d_A WSAF; GT4 family, trans 99.9 5.2E-22 1.8E-26 218.7 19.5 278 329-717 43-348 (413)
19 2gj4_A Glycogen phosphorylase, 99.9 1.2E-22 4.2E-27 237.6 12.7 238 461-704 320-671 (824)
20 2hy7_A Glucuronosyltransferase 99.8 3.9E-21 1.3E-25 210.4 11.3 293 330-720 12-335 (406)
21 1f0k_A MURG, UDP-N-acetylgluco 99.8 7.2E-19 2.5E-23 186.1 18.3 257 332-716 6-284 (364)
22 2vsy_A XCC0866; transferase, g 99.8 8.2E-17 2.8E-21 181.4 26.8 248 330-712 203-481 (568)
23 1uqt_A Alpha, alpha-trehalose- 99.8 5.4E-18 1.9E-22 190.9 16.3 225 447-717 109-391 (482)
24 3beo_A UDP-N-acetylglucosamine 99.7 7.2E-16 2.5E-20 163.4 18.7 190 451-711 87-305 (375)
25 1vgv_A UDP-N-acetylglucosamine 99.6 2.2E-15 7.5E-20 160.5 15.1 201 449-711 76-305 (384)
26 3t5t_A Putative glycosyltransf 99.6 1.8E-14 6.3E-19 162.4 16.1 206 461-716 149-408 (496)
27 2bfw_A GLGA glycogen synthase; 99.5 1.5E-14 5.3E-19 140.4 10.2 113 582-711 1-143 (200)
28 1v4v_A UDP-N-acetylglucosamine 99.5 2.3E-13 7.9E-18 144.9 14.9 135 543-717 144-305 (376)
29 2xci_A KDO-transferase, 3-deox 99.4 3.2E-12 1.1E-16 138.5 17.1 128 539-712 147-307 (374)
30 3qhp_A Type 1 capsular polysac 99.3 4E-12 1.4E-16 119.9 7.5 80 633-712 3-104 (166)
31 2f9f_A First mannosyl transfer 99.1 1.3E-10 4.5E-15 111.9 8.2 80 630-711 21-125 (177)
32 3otg_A CALG1; calicheamicin, T 99.0 2.6E-09 8.9E-14 114.7 15.4 74 633-711 244-332 (412)
33 3dzc_A UDP-N-acetylglucosamine 98.9 6.5E-09 2.2E-13 113.5 12.6 205 451-717 103-338 (396)
34 3ot5_A UDP-N-acetylglucosamine 98.9 1.5E-08 5.1E-13 111.1 15.3 136 545-717 169-332 (403)
35 4fzr_A SSFS6; structural genom 98.7 1.6E-08 5.6E-13 108.7 9.6 73 632-711 228-324 (398)
36 3s2u_A UDP-N-acetylglucosamine 98.7 2.7E-07 9.4E-12 99.4 19.0 75 631-709 179-274 (365)
37 2iyf_A OLED, oleandomycin glyc 98.7 2.5E-07 8.4E-12 100.4 18.6 75 632-711 233-323 (430)
38 3ia7_A CALG4; glycosysltransfe 98.6 1.5E-06 5.1E-11 92.6 20.8 74 632-710 232-320 (402)
39 3oti_A CALG3; calicheamicin, T 98.6 7.3E-08 2.5E-12 103.8 10.7 75 632-710 233-322 (398)
40 1ygp_A Yeast glycogen phosphor 98.6 1.8E-06 6.1E-11 101.6 19.6 239 461-704 359-730 (879)
41 3rhz_A GTF3, nucleotide sugar 98.5 2.2E-07 7.7E-12 100.0 10.3 180 459-716 72-273 (339)
42 3rsc_A CALG2; TDP, enediyne, s 98.4 7.9E-06 2.7E-10 87.9 19.0 74 632-710 248-336 (415)
43 3tsa_A SPNG, NDP-rhamnosyltran 98.4 3E-07 1E-11 98.3 6.7 74 633-710 220-309 (391)
44 4hwg_A UDP-N-acetylglucosamine 98.4 1.2E-06 4.2E-11 95.6 11.6 133 544-711 145-305 (385)
45 2p6p_A Glycosyl transferase; X 98.0 8.9E-05 3E-09 78.9 16.4 72 632-710 211-302 (384)
46 3h4t_A Glycosyltransferase GTF 97.9 0.00014 4.9E-09 78.7 14.8 73 632-711 222-310 (404)
47 2iya_A OLEI, oleandomycin glyc 97.5 0.0045 1.6E-07 66.8 20.4 74 632-710 256-344 (424)
48 4amg_A Snogd; transferase, pol 97.3 0.003 1E-07 67.1 15.1 73 633-709 239-326 (400)
49 2dfs_A Myosin-5A; myosin-V, in 95.3 0.12 4.1E-06 63.5 14.2 49 75-123 918-974 (1080)
50 3vkg_A Dynein heavy chain, cyt 95.1 0.4 1.4E-05 64.6 18.9 127 108-251 1979-2108(3245)
51 2dfs_A Myosin-5A; myosin-V, in 95.0 0.19 6.3E-06 61.8 14.3 29 63-91 927-955 (1080)
52 3q3e_A HMW1C-like glycosyltran 94.8 0.049 1.7E-06 63.0 8.1 87 622-712 432-546 (631)
53 2o6l_A UDP-glucuronosyltransfe 94.3 0.027 9.1E-07 52.9 3.8 71 632-709 22-108 (170)
54 3na7_A HP0958; flagellar bioge 94.3 1.2 4E-05 45.7 16.4 91 94-185 10-104 (256)
55 2v71_A Nuclear distribution pr 93.3 3.3 0.00011 40.9 16.6 169 67-253 6-180 (189)
56 3na7_A HP0958; flagellar bioge 92.0 1.2 4.1E-05 45.7 12.2 9 227-235 176-184 (256)
57 1i84_S Smooth muscle myosin he 91.9 0.22 7.5E-06 61.8 7.7 30 102-131 913-942 (1184)
58 3o0z_A RHO-associated protein 91.4 8.9 0.00031 37.0 16.6 133 90-242 22-162 (168)
59 3oja_B Anopheles plasmodium-re 89.2 2.6 9E-05 47.5 12.9 56 170-235 522-577 (597)
60 3u1c_A Tropomyosin alpha-1 cha 88.9 2.8 9.6E-05 37.1 10.1 57 134-190 10-70 (101)
61 3ghg_A Fibrinogen alpha chain; 88.6 1.1 3.6E-05 50.2 8.7 75 172-252 58-149 (562)
62 3oja_B Anopheles plasmodium-re 88.3 2.3 7.8E-05 48.1 11.5 45 172-219 538-582 (597)
63 3vkg_A Dynein heavy chain, cyt 87.8 12 0.00041 50.9 19.2 36 79-114 1911-1946(3245)
64 2fxo_A Myosin heavy chain, car 87.5 1.9 6.5E-05 39.8 8.5 53 75-127 38-94 (129)
65 1i84_S Smooth muscle myosin he 87.2 0.73 2.5E-05 57.2 7.1 18 102-119 885-902 (1184)
66 3a7p_A Autophagy protein 16; c 86.8 5.7 0.0002 37.7 11.3 62 172-236 76-137 (152)
67 2yjn_A ERYCIII, glycosyltransf 86.2 0.44 1.5E-05 51.6 3.9 71 633-710 269-358 (441)
68 3u59_A Tropomyosin beta chain; 84.1 6 0.00021 34.9 9.6 89 134-235 10-98 (101)
69 1psw_A ADP-heptose LPS heptosy 82.5 2.3 7.9E-05 44.1 7.4 95 615-715 166-290 (348)
70 2ocy_A RAB guanine nucleotide 82.4 24 0.00082 33.6 13.5 16 172-187 80-95 (154)
71 3tnu_A Keratin, type I cytoske 81.1 6.4 0.00022 36.3 9.0 31 206-236 81-111 (131)
72 3tnu_B Keratin, type II cytosk 81.1 7.4 0.00025 35.7 9.4 31 206-236 79-109 (129)
73 3ljm_A Coil Ser L9C; de novo d 79.3 1.3 4.5E-05 30.0 2.6 23 105-127 4-26 (31)
74 1deq_A Fibrinogen (alpha chain 79.3 8.6 0.0003 41.5 10.3 50 152-214 54-104 (390)
75 3bas_A Myosin heavy chain, str 77.0 7.7 0.00026 33.5 7.6 51 73-126 37-87 (89)
76 2v66_B Nuclear distribution pr 76.7 3.4 0.00012 37.4 5.4 82 18-130 10-91 (111)
77 2avr_X Adhesion A; antiparalle 76.6 22 0.00076 32.4 10.7 59 162-227 35-93 (119)
78 2b9c_A Striated-muscle alpha t 76.6 39 0.0013 31.8 13.0 100 99-228 21-120 (147)
79 3tnu_B Keratin, type II cytosk 75.5 14 0.0005 33.7 9.6 69 70-161 28-96 (129)
80 1iir_A Glycosyltransferase GTF 75.0 1.9 6.5E-05 46.1 4.0 71 632-709 239-323 (415)
81 4b4o_A Epimerase family protei 74.3 2.5 8.5E-05 42.9 4.5 33 333-375 1-33 (298)
82 1gk4_A Vimentin; intermediate 73.7 15 0.00051 31.3 8.5 58 174-237 4-61 (84)
83 3tnu_A Keratin, type I cytoske 73.7 17 0.00058 33.4 9.5 69 70-161 30-98 (131)
84 3ghg_A Fibrinogen alpha chain; 71.9 16 0.00055 41.0 10.3 103 74-219 53-155 (562)
85 1deq_A Fibrinogen (alpha chain 71.5 27 0.00091 37.8 11.5 36 75-110 57-92 (390)
86 3o0z_A RHO-associated protein 71.4 76 0.0026 30.6 16.5 112 73-193 29-140 (168)
87 2yjn_A ERYCIII, glycosyltransf 70.0 2.7 9.1E-05 45.4 3.7 41 329-375 17-57 (441)
88 2fxo_A Myosin heavy chain, car 69.5 37 0.0013 31.0 10.8 21 169-189 74-94 (129)
89 3cve_A Homer protein homolog 1 69.5 16 0.00056 30.5 7.4 65 99-183 4-68 (72)
90 3a7p_A Autophagy protein 16; c 69.4 4.7 0.00016 38.3 4.6 104 19-131 22-125 (152)
91 2efr_A General control protein 68.9 81 0.0028 30.0 16.5 42 145-189 75-116 (155)
92 1rrv_A Glycosyltransferase GTF 68.8 3.9 0.00013 43.6 4.7 71 632-709 238-324 (416)
93 3q8t_A Beclin-1; autophagy, AT 68.8 53 0.0018 28.7 11.1 86 86-184 5-94 (96)
94 1go4_E MAD1 (mitotic arrest de 68.7 2.3 8E-05 37.7 2.3 34 63-96 11-44 (100)
95 1m1j_B Fibrinogen beta chain; 68.0 50 0.0017 36.8 13.3 30 74-103 89-118 (464)
96 4e61_A Protein BIM1; EB1-like 67.9 4.4 0.00015 36.3 4.0 53 66-128 6-58 (106)
97 3ghg_C Fibrinogen gamma chain; 67.4 17 0.00059 39.8 9.3 43 145-187 57-100 (411)
98 1c1g_A Tropomyosin; contractIl 67.3 91 0.0031 29.9 23.8 10 24-33 54-63 (284)
99 2p01_A Alpha-2-macroglobulin r 67.0 78 0.0027 33.4 13.7 110 70-189 184-313 (323)
100 1iir_A Glycosyltransferase GTF 65.7 5.4 0.00018 42.6 5.0 38 333-376 1-38 (415)
101 2eqb_B RAB guanine nucleotide 65.5 19 0.00065 31.7 7.4 44 145-191 52-96 (97)
102 1deb_A APC protein, adenomatou 64.0 8.8 0.0003 29.8 4.3 47 68-124 7-53 (54)
103 1m1j_A Fibrinogen alpha subuni 63.5 42 0.0014 37.1 11.2 21 170-190 57-77 (491)
104 3s4r_A Vimentin; alpha-helix, 63.1 38 0.0013 29.4 9.0 84 84-185 8-91 (93)
105 3d2f_A Heat shock protein homo 62.9 29 0.001 40.2 10.8 46 82-127 524-569 (675)
106 2xs1_A Programmed cell death 6 62.7 1.5E+02 0.005 34.5 16.7 48 80-127 491-542 (704)
107 1x8y_A Lamin A/C; structural p 61.4 16 0.00053 31.4 6.1 57 175-237 7-63 (86)
108 3cvf_A Homer-3, homer protein 61.0 34 0.0012 29.1 7.9 67 97-183 8-74 (79)
109 3u1c_A Tropomyosin alpha-1 cha 60.7 44 0.0015 29.4 9.1 12 84-95 8-19 (101)
110 1g6u_A Domain swapped dimer; d 60.5 12 0.0004 27.7 4.3 40 83-126 5-44 (48)
111 3hnw_A Uncharacterized protein 57.8 51 0.0017 30.7 9.4 67 104-190 70-136 (138)
112 4gyw_A UDP-N-acetylglucosamine 57.4 12 0.00042 43.8 6.3 92 619-716 513-631 (723)
113 3tov_A Glycosyl transferase fa 56.8 24 0.00083 37.1 8.0 91 619-715 175-290 (349)
114 3i00_A HIP-I, huntingtin-inter 56.1 33 0.0011 31.3 7.6 68 145-222 45-112 (120)
115 1rrv_A Glycosyltransferase GTF 56.0 9 0.00031 40.7 4.6 37 333-375 1-37 (416)
116 4gi5_A Quinone reductase; prot 55.2 15 0.00051 38.2 5.9 40 329-372 19-59 (280)
117 3uun_A Dystrophin; triple heli 54.0 1E+02 0.0035 26.2 11.2 54 112-165 12-68 (119)
118 3rrk_A V-type ATPase 116 kDa s 53.8 20 0.00067 37.9 6.7 94 147-241 159-265 (357)
119 3etw_A Adhesin A; antiparallel 53.1 1.3E+02 0.0046 27.3 12.6 65 156-227 29-93 (119)
120 2hy5_A Putative sulfurtransfer 51.3 25 0.00085 31.7 6.1 39 333-374 1-40 (130)
121 1s94_A S-syntaxin; three helix 50.9 92 0.0032 29.6 10.4 28 224-251 127-154 (180)
122 2b5u_A Colicin E3; high resolu 50.7 2.1E+02 0.0074 32.0 14.1 20 17-36 313-332 (551)
123 3hnw_A Uncharacterized protein 50.5 97 0.0033 28.8 10.0 59 167-235 64-122 (138)
124 2odv_A Plectin 1, HD1; plakin 50.0 2.1E+02 0.0072 28.7 17.4 65 87-154 46-110 (235)
125 1ic2_A Tropomyosin alpha chain 49.6 39 0.0013 28.4 6.6 30 206-235 45-74 (81)
126 3bas_A Myosin heavy chain, str 49.5 60 0.0021 27.8 7.9 21 169-189 68-88 (89)
127 2e7s_A RAB guanine nucleotide 48.7 89 0.0031 29.1 9.3 45 145-192 72-117 (135)
128 3rkg_A Magnesium transporter M 48.7 2.4E+02 0.0081 28.9 13.6 33 221-253 214-246 (261)
129 2d1p_A TUSD, hypothetical UPF0 48.1 31 0.0011 31.9 6.3 40 331-373 11-51 (140)
130 3mov_A Lamin-B1; LMNB1, B-type 48.1 41 0.0014 29.4 6.6 47 101-160 11-57 (95)
131 3mov_A Lamin-B1; LMNB1, B-type 47.2 29 0.001 30.3 5.6 56 175-236 16-71 (95)
132 1ykh_B RNA polymerase II holoe 47.1 97 0.0033 28.5 9.4 28 147-174 3-30 (132)
133 4dvy_P Cytotoxicity-associated 46.8 70 0.0024 36.1 9.5 54 145-198 740-807 (876)
134 3ew7_A LMO0794 protein; Q8Y8U8 46.2 18 0.0006 34.3 4.5 33 333-375 1-33 (221)
135 3s84_A Apolipoprotein A-IV; fo 45.9 2.6E+02 0.0091 28.6 22.6 96 145-245 152-249 (273)
136 1m1j_C Fibrinogen gamma chain; 45.4 27 0.00092 38.3 6.2 12 114-125 36-47 (409)
137 3oh8_A Nucleoside-diphosphate 45.2 30 0.001 38.3 6.8 34 332-375 147-180 (516)
138 1lss_A TRK system potassium up 45.1 19 0.00065 31.5 4.2 32 332-374 4-35 (140)
139 3h2s_A Putative NADH-flavin re 44.8 19 0.00065 34.3 4.5 32 333-374 1-32 (224)
140 1ic2_A Tropomyosin alpha chain 44.8 1.4E+02 0.0047 25.0 10.2 24 138-161 11-34 (81)
141 1ez3_A Syntaxin-1A; three heli 44.7 1.6E+02 0.0056 25.9 12.6 27 223-249 95-121 (127)
142 3ol1_A Vimentin; structural ge 44.4 63 0.0022 29.1 7.6 95 64-171 20-114 (119)
143 2pq6_A UDP-glucuronosyl/UDP-gl 44.2 21 0.00072 39.2 5.3 38 332-375 8-45 (482)
144 3ty2_A 5'-nucleotidase SURE; s 44.0 20 0.00068 37.0 4.6 41 330-378 9-49 (261)
145 4g65_A TRK system potassium up 43.7 8.1 0.00028 42.8 1.8 32 331-373 2-33 (461)
146 1wcv_1 SOJ, segregation protei 43.5 26 0.0009 34.7 5.4 37 331-373 4-42 (257)
147 1hdo_A Biliverdin IX beta redu 43.3 25 0.00084 32.8 4.9 33 333-375 4-36 (206)
148 2pih_A Protein YMCA; regulate 43.2 1.8E+02 0.0063 27.0 10.9 13 144-156 8-20 (151)
149 2q6q_A Spindle POLE BODY compo 42.6 1.1E+02 0.0038 25.1 7.8 46 170-219 2-48 (74)
150 2vch_A Hydroquinone glucosyltr 42.5 20 0.00067 39.6 4.6 40 331-376 5-45 (480)
151 2cly_A ATP synthase B chain, m 42.2 62 0.0021 32.3 7.8 91 68-167 88-185 (214)
152 3okq_A BUD site selection prot 41.6 85 0.0029 29.4 8.0 58 18-102 28-85 (141)
153 3ghg_B Fibrinogen beta chain; 41.6 1.7E+02 0.0058 32.5 11.7 23 80-102 90-112 (461)
154 3ra3_A P1C; coiled coil domain 41.4 12 0.00041 24.8 1.6 27 72-98 1-27 (28)
155 3haj_A Human pacsin2 F-BAR; pa 41.2 3.9E+02 0.013 29.3 15.9 27 68-94 78-104 (486)
156 4e81_A Chaperone protein DNAK; 41.2 1.1E+02 0.0037 30.4 9.4 72 82-158 119-190 (219)
157 3fwz_A Inner membrane protein 40.6 29 0.00099 31.2 4.8 33 332-375 7-39 (140)
158 1id1_A Putative potassium chan 40.4 29 0.001 31.5 4.8 24 352-375 12-35 (153)
159 4gkw_A Spindle assembly abnorm 39.9 2.3E+02 0.0079 26.2 16.9 94 82-191 15-111 (167)
160 3fhn_A Protein transport prote 39.9 1.1E+02 0.0038 35.8 10.5 27 96-122 11-37 (706)
161 3t98_B Nucleoporin NUP58/NUP45 39.0 1.2E+02 0.004 26.4 8.0 67 104-186 14-80 (93)
162 1m1j_B Fibrinogen beta chain; 38.9 2.7E+02 0.0093 30.9 13.0 15 172-186 101-115 (464)
163 1yke_B RNA polymerase II holoe 38.9 81 0.0028 29.8 7.6 27 148-174 4-30 (151)
164 1m3w_A H10H24; four-helix bund 38.7 40 0.0014 23.0 3.8 29 189-221 3-31 (32)
165 3e8x_A Putative NAD-dependent 38.4 28 0.00096 33.7 4.6 36 330-375 19-54 (236)
166 3i6i_A Putative leucoanthocyan 38.3 22 0.00077 36.6 4.1 36 330-375 8-43 (346)
167 3l4b_C TRKA K+ channel protien 38.0 26 0.00088 33.9 4.2 24 351-374 8-31 (218)
168 2jee_A YIIU; FTSZ, septum, coi 38.0 34 0.0012 29.2 4.3 28 66-93 22-49 (81)
169 1u00_A HSC66, chaperone protei 37.9 1.6E+02 0.0056 29.1 10.2 90 82-188 116-205 (227)
170 2x4g_A Nucleoside-diphosphate- 37.9 28 0.00096 35.4 4.7 35 331-375 12-46 (342)
171 1rpn_A GDP-mannose 4,6-dehydra 37.6 27 0.00091 35.5 4.5 37 329-375 11-47 (335)
172 3dqp_A Oxidoreductase YLBE; al 37.2 23 0.00079 33.8 3.7 33 333-375 1-33 (219)
173 2g1u_A Hypothetical protein TM 37.1 33 0.0011 31.2 4.6 38 327-375 14-51 (155)
174 1go4_E MAD1 (mitotic arrest de 36.7 46 0.0016 29.5 5.1 26 102-127 19-44 (100)
175 2ocy_A RAB guanine nucleotide 36.7 2.8E+02 0.0096 26.3 15.5 17 174-190 111-127 (154)
176 2j69_A Bacterial dynamin-like 36.6 5.5E+02 0.019 29.6 18.2 20 263-282 513-532 (695)
177 4dzn_A Coiled-coil peptide CC- 36.6 16 0.00056 25.0 1.7 27 66-92 4-30 (33)
178 1sjj_A Actinin; 3-helix bundle 36.1 5.8E+02 0.02 29.7 17.5 24 104-127 372-395 (863)
179 2eqb_B RAB guanine nucleotide 36.0 1.2E+02 0.0041 26.7 7.6 85 68-158 9-94 (97)
180 1l8d_A DNA double-strand break 35.8 2.2E+02 0.0074 24.7 10.2 27 103-129 18-44 (112)
181 3cvf_A Homer-3, homer protein 35.8 1.1E+02 0.0038 25.9 7.1 20 172-191 21-40 (79)
182 1jx7_A Hypothetical protein YC 35.6 54 0.0018 28.2 5.5 40 333-375 2-43 (117)
183 2kho_A Heat shock protein 70; 35.5 78 0.0027 36.0 8.3 90 82-188 507-596 (605)
184 3hly_A Flavodoxin-like domain; 35.0 44 0.0015 31.0 5.2 37 333-374 1-37 (161)
185 2v0o_A FCHO2, FCH domain only 34.9 3.4E+02 0.012 26.7 18.6 6 290-295 252-257 (276)
186 3thf_A Protein shroom; coiled- 34.9 3.3E+02 0.011 26.6 17.4 128 65-216 20-163 (190)
187 3tul_A Cell invasion protein S 34.8 1E+02 0.0036 29.0 7.4 69 115-188 19-93 (158)
188 2efl_A Formin-binding protein 34.8 3.6E+02 0.012 26.9 18.1 88 68-158 73-162 (305)
189 2efr_A General control protein 34.7 3E+02 0.01 26.0 17.8 68 171-248 70-137 (155)
190 2wt7_A Proto-oncogene protein 34.6 17 0.0006 29.2 1.9 33 66-98 25-57 (63)
191 2dq0_A Seryl-tRNA synthetase; 34.3 24 0.00081 39.2 3.6 20 20-39 4-23 (455)
192 1y1p_A ARII, aldehyde reductas 34.2 42 0.0014 33.9 5.3 35 330-374 9-43 (342)
193 3qne_A Seryl-tRNA synthetase, 34.0 24 0.00081 39.6 3.5 15 26-40 14-28 (485)
194 2v71_A Nuclear distribution pr 33.7 3.5E+02 0.012 26.4 18.1 43 202-248 102-144 (189)
195 3u59_A Tropomyosin beta chain; 33.3 2.4E+02 0.0081 24.4 9.8 12 84-95 8-19 (101)
196 3nbm_A PTS system, lactose-spe 33.3 51 0.0018 29.2 5.0 44 329-378 3-46 (108)
197 3mcu_A Dipicolinate synthase, 33.3 30 0.001 34.3 3.9 37 333-377 6-44 (207)
198 3hbm_A UDP-sugar hydrolase; PS 32.4 71 0.0024 32.9 6.7 26 679-709 221-246 (282)
199 4id9_A Short-chain dehydrogena 32.3 31 0.0011 35.3 3.9 36 330-375 17-52 (347)
200 4etp_A Kinesin-like protein KA 32.1 39 0.0013 36.8 4.8 61 64-127 3-63 (403)
201 3ni0_A Bone marrow stromal ant 31.9 1.1E+02 0.0039 26.7 6.6 70 120-195 22-91 (99)
202 3lqk_A Dipicolinate synthase s 31.9 36 0.0012 33.5 4.2 38 332-377 7-46 (201)
203 1gk4_A Vimentin; intermediate 31.8 2E+02 0.007 24.1 8.3 22 106-127 5-26 (84)
204 3kjh_A CO dehydrogenase/acetyl 31.8 39 0.0013 32.6 4.4 35 333-375 1-37 (254)
205 3doj_A AT3G25530, dehydrogenas 31.7 38 0.0013 34.8 4.5 35 329-374 18-52 (310)
206 2ph1_A Nucleotide-binding prot 31.7 43 0.0015 33.3 4.8 36 333-374 18-55 (262)
207 1d7m_A Cortexillin I; coiled-c 31.5 2.6E+02 0.0087 24.2 9.4 15 176-190 2-16 (101)
208 3dhn_A NAD-dependent epimerase 31.5 38 0.0013 32.3 4.2 27 349-375 11-37 (227)
209 3slg_A PBGP3 protein; structur 31.4 33 0.0011 35.6 4.0 36 330-375 22-58 (372)
210 3s4r_A Vimentin; alpha-helix, 31.3 2.5E+02 0.0087 24.1 10.6 80 153-241 12-91 (93)
211 3oja_A Leucine-rich immune mol 31.0 3E+02 0.01 29.9 11.9 24 218-241 458-481 (487)
212 3u06_A Protein claret segregat 30.7 46 0.0016 36.4 5.1 59 66-127 5-63 (412)
213 1hjb_A Ccaat/enhancer binding 30.6 26 0.0009 30.2 2.5 31 68-98 40-70 (87)
214 3ic5_A Putative saccharopine d 30.4 51 0.0017 27.7 4.4 23 352-374 14-37 (118)
215 4b9q_A Chaperone protein DNAK; 30.3 1.6E+02 0.0055 33.4 9.8 71 82-157 507-577 (605)
216 4hb9_A Similarities with proba 30.3 35 0.0012 35.4 4.0 29 333-372 2-30 (412)
217 4h22_A Leucine-rich repeat fli 30.1 91 0.0031 27.7 5.9 10 117-126 3-12 (103)
218 1jay_A Coenzyme F420H2:NADP+ o 30.0 44 0.0015 31.8 4.3 26 349-374 7-32 (212)
219 3cve_A Homer protein homolog 1 29.9 1.5E+02 0.0053 24.6 6.9 22 170-191 13-34 (72)
220 2v4h_A NF-kappa-B essential mo 29.8 3.1E+02 0.01 24.6 10.3 15 144-158 28-42 (110)
221 2pms_C Pneumococcal surface pr 29.7 1.9E+02 0.0063 26.6 8.0 40 83-129 49-88 (125)
222 1cp2_A CP2, nitrogenase iron p 29.6 35 0.0012 33.7 3.7 34 333-373 1-36 (269)
223 4dll_A 2-hydroxy-3-oxopropiona 29.6 32 0.0011 35.6 3.5 36 328-374 27-62 (320)
224 4huj_A Uncharacterized protein 29.6 40 0.0014 32.8 4.1 33 330-373 21-53 (220)
225 2xj4_A MIPZ; replication, cell 29.5 47 0.0016 33.6 4.7 35 333-373 4-40 (286)
226 3i2w_A Syndapin, LD46328P; EFC 29.4 2.4E+02 0.0082 28.3 10.1 27 68-94 64-90 (290)
227 2xv5_A Lamin-A/C; structural p 29.3 97 0.0033 25.8 5.7 32 205-236 8-39 (74)
228 3vps_A TUNA, NAD-dependent epi 29.3 41 0.0014 33.7 4.2 27 349-375 14-40 (321)
229 1gd2_E Transcription factor PA 29.2 1.3E+02 0.0046 24.7 6.5 31 197-227 17-47 (70)
230 1gu4_A CAAT/enhancer binding p 29.1 30 0.001 29.3 2.5 31 68-98 40-70 (78)
231 1vl0_A DTDP-4-dehydrorhamnose 29.0 27 0.00093 34.7 2.8 37 329-375 9-45 (292)
232 2no2_A HIP-I, huntingtin-inter 28.9 2.2E+02 0.0076 25.2 8.4 33 97-129 10-42 (107)
233 3k9g_A PF-32 protein; ssgcid, 28.9 36 0.0012 33.7 3.7 39 330-375 24-64 (267)
234 3ko8_A NAD-dependent epimerase 28.8 44 0.0015 33.5 4.3 26 349-374 7-32 (312)
235 3ruf_A WBGU; rossmann fold, UD 28.7 48 0.0017 33.9 4.7 34 332-375 25-58 (351)
236 2xu6_A MDV1 coiled coil; prote 28.5 31 0.0011 28.8 2.4 30 101-130 41-70 (72)
237 1wle_A Seryl-tRNA synthetase; 28.3 54 0.0018 36.8 5.2 29 12-40 35-63 (501)
238 2z1m_A GDP-D-mannose dehydrata 28.2 45 0.0016 33.7 4.3 33 332-374 3-35 (345)
239 2pzm_A Putative nucleotide sug 28.1 50 0.0017 33.7 4.6 35 330-374 18-52 (330)
240 3c3g_A Alpha/beta peptide with 28.1 54 0.0018 23.2 3.2 21 169-189 12-32 (33)
241 2oxj_A Hybrid alpha/beta pepti 27.9 51 0.0017 23.5 3.1 21 169-189 13-33 (34)
242 1t2k_D Cyclic-AMP-dependent tr 27.7 28 0.00097 27.6 2.1 32 66-97 24-55 (61)
243 1t6f_A Geminin; coiled-coil, c 27.7 30 0.001 25.0 1.9 16 70-85 20-35 (37)
244 2ew2_A 2-dehydropantoate 2-red 27.7 42 0.0014 33.7 4.0 32 332-374 3-34 (316)
245 3mtu_A Tropomyosin alpha-1 cha 27.5 79 0.0027 26.3 4.9 45 83-130 7-51 (75)
246 3auf_A Glycinamide ribonucleot 27.5 2E+02 0.0067 28.7 8.8 110 331-500 21-132 (229)
247 2a5l_A Trp repressor binding p 27.3 81 0.0028 29.6 5.7 37 332-373 5-41 (200)
248 2b69_A UDP-glucuronate decarbo 27.1 52 0.0018 33.6 4.6 36 330-375 25-60 (343)
249 1gk6_A Vimentin; intermediate 27.1 77 0.0026 25.1 4.5 30 207-236 5-34 (59)
250 2lf0_A Uncharacterized protein 27.1 1.1E+02 0.0037 27.8 5.9 58 138-200 8-68 (123)
251 1dh3_A Transcription factor CR 27.0 19 0.00065 28.3 0.9 30 66-95 24-53 (55)
252 2q6q_A Spindle POLE BODY compo 27.0 1.1E+02 0.0039 25.1 5.4 58 71-131 10-67 (74)
253 2ayu_A Nucleosome assembly pro 26.8 1.6E+02 0.0055 32.2 8.5 30 259-291 182-211 (417)
254 3f6r_A Flavodoxin; FMN binding 26.7 73 0.0025 28.5 5.0 37 333-374 2-38 (148)
255 2yy0_A C-MYC-binding protein; 26.6 47 0.0016 25.9 3.1 26 70-95 18-43 (53)
256 2efk_A CDC42-interacting prote 26.6 4.9E+02 0.017 25.9 20.0 67 68-134 66-134 (301)
257 3qne_A Seryl-tRNA synthetase, 26.5 2E+02 0.0067 32.2 9.3 22 206-227 82-103 (485)
258 3pg5_A Uncharacterized protein 26.5 64 0.0022 34.1 5.2 36 333-374 1-38 (361)
259 4dzn_A Coiled-coil peptide CC- 26.4 39 0.0013 23.2 2.2 26 72-97 3-28 (33)
260 3pdy_A Plectin; cytoskeleton, 26.4 4.3E+02 0.015 25.2 18.1 89 102-192 38-126 (210)
261 2l2q_A PTS system, cellobiose- 26.3 91 0.0031 27.2 5.4 43 331-379 3-45 (109)
262 2d1p_B TUSC, hypothetical UPF0 26.1 91 0.0031 27.5 5.4 38 334-374 3-40 (119)
263 2dkn_A 3-alpha-hydroxysteroid 26.1 49 0.0017 31.9 3.9 26 349-374 8-33 (255)
264 1f4p_A Flavodoxin; electron tr 26.1 67 0.0023 28.7 4.6 36 333-373 1-36 (147)
265 3m2p_A UDP-N-acetylglucosamine 26.1 57 0.0019 32.8 4.6 27 349-375 9-35 (311)
266 3mq9_A Bone marrow stromal ant 25.9 4.3E+02 0.015 28.4 12.0 106 69-190 357-462 (471)
267 2hy5_B Intracellular sulfur ox 25.9 83 0.0028 28.8 5.2 40 332-374 4-44 (136)
268 3tem_A Ribosyldihydronicotinam 25.9 74 0.0025 31.5 5.3 39 332-374 1-40 (228)
269 1m1j_A Fibrinogen alpha subuni 25.7 6.5E+02 0.022 27.9 12.8 33 74-106 54-86 (491)
270 2oto_A M protein; helical coil 25.7 4E+02 0.014 24.6 11.9 51 75-125 26-80 (155)
271 1rkx_A CDP-glucose-4,6-dehydra 25.7 33 0.0011 35.3 2.7 34 332-375 9-42 (357)
272 2q62_A ARSH; alpha/beta, flavo 25.6 1.1E+02 0.0039 30.6 6.7 41 329-373 31-72 (247)
273 1ydg_A Trp repressor binding p 25.6 92 0.0031 29.7 5.8 38 332-374 6-43 (211)
274 3gpi_A NAD-dependent epimerase 25.6 59 0.002 32.3 4.5 34 331-375 2-35 (286)
275 3d7l_A LIN1944 protein; APC893 25.4 59 0.002 30.4 4.3 33 332-375 3-35 (202)
276 1js1_X Transcarbamylase; alpha 25.4 68 0.0023 34.0 5.1 41 332-376 166-206 (324)
277 1ks9_A KPA reductase;, 2-dehyd 25.3 51 0.0017 32.8 4.0 32 333-375 1-32 (291)
278 3tul_A Cell invasion protein S 25.2 1.7E+02 0.0058 27.6 7.0 52 115-166 75-133 (158)
279 1kyq_A Met8P, siroheme biosynt 25.1 48 0.0016 34.3 3.8 34 332-376 13-46 (274)
280 3c3f_A Alpha/beta peptide with 25.1 65 0.0022 22.9 3.2 21 169-189 13-33 (34)
281 3mc3_A DSRE/DSRF-like family p 25.1 1.1E+02 0.0037 27.6 5.9 42 331-375 14-55 (134)
282 2e6c_A 5'-nucleotidase SURE; S 25.0 59 0.002 33.1 4.4 38 333-378 1-38 (244)
283 1zbt_A RF-1, peptide chain rel 25.0 68 0.0023 34.7 5.0 16 21-36 20-35 (371)
284 4dzz_A Plasmid partitioning pr 24.9 96 0.0033 28.9 5.7 36 333-374 1-38 (206)
285 4dvz_A Cytotoxicity-associated 24.8 2.1E+02 0.0071 31.2 8.5 54 145-198 480-547 (569)
286 3nmd_A CGMP dependent protein 24.7 1.8E+02 0.0063 24.1 6.4 18 229-246 49-66 (72)
287 2ke4_A CDC42-interacting prote 24.6 1.5E+02 0.0051 26.0 6.3 33 129-162 5-37 (98)
288 3nmd_A CGMP dependent protein 24.6 99 0.0034 25.8 4.8 41 90-130 28-68 (72)
289 2phj_A 5'-nucleotidase SURE; S 24.6 62 0.0021 33.1 4.5 38 333-378 2-39 (251)
290 2acv_A Triterpene UDP-glucosyl 24.5 33 0.0011 37.5 2.6 40 332-377 9-50 (463)
291 2yy0_A C-MYC-binding protein; 24.5 36 0.0012 26.7 2.0 35 87-121 4-38 (53)
292 1ci6_A Transcription factor AT 24.4 42 0.0014 27.0 2.5 30 68-97 27-56 (63)
293 2zki_A 199AA long hypothetical 24.3 81 0.0028 29.6 5.1 37 332-374 4-40 (199)
294 3oja_A Leucine-rich immune mol 24.3 6.9E+02 0.024 26.9 16.5 27 201-227 434-460 (487)
295 3t98_B Nucleoporin NUP58/NUP45 24.3 3.1E+02 0.011 23.7 8.2 60 176-235 24-84 (93)
296 2rh8_A Anthocyanidin reductase 24.0 65 0.0022 32.7 4.6 26 349-374 16-41 (338)
297 1j9j_A Stationary phase surviV 24.0 65 0.0022 32.8 4.5 38 333-378 1-38 (247)
298 3qsg_A NAD-binding phosphogluc 24.0 44 0.0015 34.5 3.3 32 332-374 24-56 (312)
299 2lw1_A ABC transporter ATP-bin 23.9 1.6E+02 0.0055 24.9 6.3 19 107-125 27-45 (89)
300 2k48_A Nucleoprotein; viral pr 23.9 1.6E+02 0.0054 26.2 6.2 54 106-159 46-101 (107)
301 2pv7_A T-protein [includes: ch 23.8 62 0.0021 33.1 4.4 26 349-374 28-53 (298)
302 3d5a_X RF1, peptide chain rele 23.8 91 0.0031 33.5 5.7 17 20-36 5-21 (354)
303 1kd8_B GABH BLL, GCN4 acid bas 23.8 1.1E+02 0.0036 22.1 4.1 22 169-190 13-34 (36)
304 3r6d_A NAD-dependent epimerase 23.6 68 0.0023 30.5 4.4 24 348-374 14-38 (221)
305 1bg6_A N-(1-D-carboxylethyl)-L 23.5 57 0.002 33.6 4.1 32 332-374 4-35 (359)
306 3l6d_A Putative oxidoreductase 23.4 66 0.0023 33.0 4.5 32 331-373 8-39 (306)
307 2p5y_A UDP-glucose 4-epimerase 23.3 59 0.002 32.6 4.1 25 349-373 7-31 (311)
308 1x8y_A Lamin A/C; structural p 23.3 73 0.0025 27.1 4.0 41 107-160 8-48 (86)
309 2iub_A CORA, divalent cation t 23.2 2.1E+02 0.0071 30.2 8.5 20 72-91 222-241 (363)
310 1i24_A Sulfolipid biosynthesis 23.0 62 0.0021 33.7 4.3 25 349-373 18-42 (404)
311 3k29_A Putative uncharacterize 23.0 5.1E+02 0.017 24.9 17.0 126 104-250 29-162 (169)
312 2c20_A UDP-glucose 4-epimerase 22.9 68 0.0023 32.3 4.5 26 349-374 8-33 (330)
313 1e6u_A GDP-fucose synthetase; 22.8 43 0.0015 33.7 2.9 33 332-374 3-35 (321)
314 3zqu_A Probable aromatic acid 22.8 1E+02 0.0036 30.5 5.6 35 333-375 5-40 (209)
315 2v66_B Nuclear distribution pr 22.7 3.6E+02 0.012 24.1 8.5 24 74-97 6-29 (111)
316 1bb1_B Designed, thermostable 22.7 44 0.0015 23.4 1.9 27 72-98 3-29 (36)
317 1l5x_A SurviVal protein E; str 22.7 71 0.0024 33.2 4.5 38 333-378 1-38 (280)
318 1gy8_A UDP-galactose 4-epimera 22.6 73 0.0025 33.1 4.8 33 332-374 2-35 (397)
319 2wuj_A Septum site-determining 22.6 17 0.00057 28.8 -0.2 30 65-94 28-57 (57)
320 3ius_A Uncharacterized conserv 22.5 63 0.0022 31.9 4.0 26 349-375 12-37 (286)
321 3efg_A Protein SLYX homolog; x 22.4 83 0.0028 26.4 4.1 14 114-127 12-25 (78)
322 1sbz_A Probable aromatic acid 22.4 89 0.0031 30.7 5.0 35 333-375 1-37 (197)
323 3dtt_A NADP oxidoreductase; st 22.3 71 0.0024 31.6 4.3 35 330-375 17-51 (245)
324 4dk0_A Putative MACA; alpha-ha 22.2 1.8E+02 0.0062 30.1 7.7 25 177-201 97-121 (369)
325 1wt6_A Myotonin-protein kinase 22.2 82 0.0028 26.8 3.9 17 68-84 28-44 (81)
326 2vns_A Metalloreductase steap3 22.2 62 0.0021 31.4 3.8 33 331-374 27-59 (215)
327 3dfu_A Uncharacterized protein 22.0 20 0.00068 36.2 0.2 33 330-373 4-36 (232)
328 1sb8_A WBPP; epimerase, 4-epim 21.9 77 0.0026 32.4 4.7 34 332-375 27-60 (352)
329 2q1w_A Putative nucleotide sug 21.9 76 0.0026 32.3 4.6 27 349-375 28-54 (333)
330 1udb_A Epimerase, UDP-galactos 21.8 69 0.0024 32.5 4.3 25 349-373 7-31 (338)
331 3k96_A Glycerol-3-phosphate de 21.7 58 0.002 34.6 3.8 34 330-374 27-60 (356)
332 2bni_A General control protein 21.7 74 0.0025 22.7 2.9 21 169-189 13-33 (34)
333 2pk3_A GDP-6-deoxy-D-LYXO-4-he 21.6 64 0.0022 32.4 3.9 26 349-374 19-44 (321)
334 1uii_A Geminin; human, DNA rep 21.5 3.8E+02 0.013 22.8 7.9 34 144-187 28-62 (83)
335 4egb_A DTDP-glucose 4,6-dehydr 21.5 54 0.0018 33.4 3.4 34 331-374 23-56 (346)
336 2dgc_A Protein (GCN4); basic d 21.5 34 0.0011 27.6 1.4 30 66-95 32-61 (63)
337 2hun_A 336AA long hypothetical 21.5 66 0.0023 32.5 4.0 34 331-374 2-37 (336)
338 3fni_A Putative diflavin flavo 21.5 1.5E+02 0.005 27.4 6.1 38 333-375 5-42 (159)
339 3ghy_A Ketopantoate reductase 21.4 59 0.002 33.8 3.7 32 332-374 3-34 (335)
340 2p22_C Protein SRN2; endosome, 21.4 5.7E+02 0.019 24.8 11.3 103 150-252 41-146 (192)
341 2qyt_A 2-dehydropantoate 2-red 21.4 46 0.0016 33.7 2.8 34 330-374 6-45 (317)
342 2v4n_A Multifunctional protein 21.3 82 0.0028 32.2 4.6 39 332-378 1-39 (254)
343 3efg_A Protein SLYX homolog; x 21.2 1.8E+02 0.0063 24.3 6.0 50 173-222 9-62 (78)
344 3sxp_A ADP-L-glycero-D-mannohe 21.2 99 0.0034 31.8 5.4 35 330-374 8-44 (362)
345 1f5n_A Interferon-induced guan 21.1 4.6E+02 0.016 29.9 11.2 36 150-188 459-494 (592)
346 1jnm_A Proto-oncogene C-JUN; B 21.1 40 0.0014 26.8 1.8 32 66-97 24-55 (62)
347 2ydy_A Methionine adenosyltran 21.1 71 0.0024 32.0 4.1 25 349-373 9-33 (315)
348 1p9o_A Phosphopantothenoylcyst 20.9 36 0.0012 36.0 1.8 24 352-375 65-88 (313)
349 3sc6_A DTDP-4-dehydrorhamnose 20.8 35 0.0012 33.8 1.7 27 349-375 12-38 (287)
350 1q02_A Sequestosome 1; helical 20.7 28 0.00096 27.2 0.7 19 697-720 13-31 (52)
351 3kbt_A Beta-I spectrin, spectr 20.7 6.4E+02 0.022 25.1 20.1 78 70-151 82-161 (326)
352 1fjh_A 3alpha-hydroxysteroid d 20.7 74 0.0025 31.0 4.0 34 333-375 1-34 (257)
353 2b9c_A Striated-muscle alpha t 20.7 5.2E+02 0.018 24.1 13.6 85 158-245 31-116 (147)
354 2c5a_A GDP-mannose-3', 5'-epim 20.7 90 0.0031 32.6 4.9 27 349-375 36-62 (379)
355 3hhm_B NISH2 P85alpha; PI3KCA, 20.6 5.3E+02 0.018 27.6 11.0 49 69-120 138-186 (373)
356 3enk_A UDP-glucose 4-epimerase 20.6 85 0.0029 31.8 4.7 33 332-374 5-37 (341)
357 1gqe_A Release factor 2, RF2; 20.6 7.7E+02 0.026 26.4 12.2 24 175-198 29-52 (365)
358 2pih_A Protein YMCA; regulate 20.5 5.1E+02 0.017 23.9 10.5 44 173-216 68-111 (151)
359 4ds3_A Phosphoribosylglycinami 20.4 1.8E+02 0.0063 28.6 6.8 114 327-500 2-117 (209)
360 3fgn_A Dethiobiotin synthetase 20.4 1.4E+02 0.0049 30.0 6.2 50 317-374 14-63 (251)
361 4e21_A 6-phosphogluconate dehy 20.3 71 0.0024 34.0 4.1 33 331-374 21-53 (358)
362 3g0o_A 3-hydroxyisobutyrate de 20.2 74 0.0025 32.4 4.1 32 332-374 7-38 (303)
363 1n7h_A GDP-D-mannose-4,6-dehyd 20.1 70 0.0024 33.2 3.9 27 349-375 35-61 (381)
No 1
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=100.00 E-value=6.1e-58 Score=521.78 Aligned_cols=372 Identities=29% Similarity=0.461 Sum_probs=288.5
Q ss_pred CCCCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeee
Q 004879 328 SISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKV 407 (725)
Q Consensus 328 ~~~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV 407 (725)
.+.+.|||||+|+|++|++|+||+|+++.+|+++|+++||+|+||+|.|++.... .. . .......+.+....+++
T Consensus 5 ~~~~~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~P~Y~~~~~~-~~-~---~~~~~~~~~~~~~~~~~ 79 (536)
T 3vue_A 5 HHHHHMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDA-WD-T---SVVAEIKVADRYERVRF 79 (536)
T ss_dssp ---CCCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCSCCTTC-EE-E---EEEEEEEETTEEEEEEE
T ss_pred cCCCCcEEEEEEEeccchhccCcHHHHHHHHHHHHHHcCCeEEEEecCchhhhhh-cc-c---ceEEEEEecCceEEEEE
Confidence 3567899999999999999999999999999999999999999999999876431 10 0 01111112333445788
Q ss_pred EeeeeCCeeEEEeCCCCCCccccc------CCCCC------CCchhhhHHHHHHHHHHHHHHcC-----------CCceE
Q 004879 408 WVSTIEGLPVYFIEPHHPDKFFWR------GQFYG------EHDDFRRFSFFSRAALELLLQAG-----------KQPDI 464 (725)
Q Consensus 408 ~~~~v~GI~V~~I~~~~ps~~F~r------~~~Yg------~~dd~~r~~~FsravlelL~~~~-----------~kPDI 464 (725)
|.....|+++|||+++. ||.+ +.+|+ +.|+..||.+|+++++++++..+ +.|||
T Consensus 80 ~~~~~~gv~~y~id~~~---~~~r~~~~~~~~~Y~~~~~~~~~d~~~rf~~f~~a~l~~~~~l~~~~~~~~~~~~~~ddI 156 (536)
T 3vue_A 80 FHCYKRGVDRVFIDHPS---FLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVV 156 (536)
T ss_dssp EECEETTEEEEEEECTT---TTCC------------------CHHHHHHHHHHHHHHHHHHHCCCCCCTTCCSCCCSCEE
T ss_pred EEEEECCceEEEecChh---hhccccccCCCcccCCCccCccchHHHHHHHHHHHHHHHHHHhccccchhhhccCCCCEE
Confidence 88888999999998643 5554 24565 46889999999999999877542 35789
Q ss_pred EEECCCchhhHHHHHHHhhccCC-CCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcc---cccccccccchhhhh
Q 004879 465 IHCHDWQTAFVAPLYWDLYVPKG-LNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPD---RMQDNSAHDRINPLK 540 (725)
Q Consensus 465 IH~Hdw~sa~vapl~~~~ya~~g-l~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~---~l~d~~~~~~in~~k 540 (725)
+||||||+++++.++...+...+ +.++|+|+|+||+.++|.++...+..++++.......+ ......+...+|+++
T Consensus 157 iH~hDW~t~l~~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~k 236 (536)
T 3vue_A 157 FVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMK 236 (536)
T ss_dssp EEEESGGGSTHHHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTCEEEEEHHH
T ss_pred EEECcchHHHHHHHHHHhhhhhhhhcccceeeeecCcccccccchhhhhhcCCchhhcchhhhhhcccccccccchhHHH
Confidence 99999999998544434443222 35899999999999999887776666666543221111 111123567899999
Q ss_pred hhhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCccc-ccchhhhHHHH
Q 004879 541 GAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNAND-LQGKAENKESI 619 (725)
Q Consensus 541 ~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d-~~gK~~~K~aL 619 (725)
.++.+||.|+|||++|++++.+. ++.|+.........++.+|+||||++.|+|.+|+.++.+|+..+ +.+|..+|..+
T Consensus 237 ~~i~~ad~v~tVS~~~a~ei~~~-~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k~~l 315 (536)
T 3vue_A 237 AGILEADRVLTVSPYYAEELISG-IARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEAL 315 (536)
T ss_dssp HHHHHCSEEEESCHHHHHHHHTT-CCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHHHHH
T ss_pred HHHHhccEEEEcCHHHhhhhhcc-cccccccccccccCCeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHHHHH
Confidence 99999999999999999998774 45554444445577899999999999999999999999998765 67999999999
Q ss_pred HHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhcCCcEEEEEcCCCccc---ccH-------------------
Q 004879 620 RKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPVPH---IQV------------------- 677 (725)
Q Consensus 620 Rk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~~~iqLVIvG~Gp~~~---le~------------------- 677 (725)
++++|++. +++.|+|+||||++++||+++|++|++++.+.+.+|+|+|.|+... ++.
T Consensus 316 ~~~~gl~~-d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~~~~~l~l~G~G~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 394 (536)
T 3vue_A 316 QAEAGLPV-DRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPL 394 (536)
T ss_dssp HHHTTSCC-CTTSCEEEEECCBSGGGCHHHHHHHHHHHTTSSCEEEEECCBCHHHHHHHHHHHHHSTTTEEEECSCCHHH
T ss_pred HHhcCCCC-CCCCcEEEEEeeccccCChHHHHHHHHHhHhhCCeEEEEeccCchHHHHHHHHHhhcCCceEEEEeccHHH
Confidence 99999984 6789999999999999999999999999988899999999987442 110
Q ss_pred -HHHHHhcCeEEEcCCcccchHHHHHHcCCCcc
Q 004879 678 -YPILLSSFSFLRKHIFNICNLYIKLGQGGDLT 709 (725)
Q Consensus 678 -~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~ 709 (725)
..+|++||+||+||++||||++++|||+++.|
T Consensus 395 ~~~~~~~aD~~v~PS~~E~fgl~~lEAma~G~P 427 (536)
T 3vue_A 395 AHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTP 427 (536)
T ss_dssp HHHHHHHCSEEEECCSCCSSCSHHHHHHHTTCC
T ss_pred HHHHHHhhheeecccccCCCCHHHHHHHHcCCC
Confidence 17999999999999999999999999954444
No 2
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=6.6e-39 Score=354.40 Aligned_cols=360 Identities=28% Similarity=0.473 Sum_probs=255.7
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeee
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 412 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v 412 (725)
|||++|+.+++|....||++.++..|+++|+++||+|+|++|.++..... ...+..+. .....+ |. ..++.....
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~-~~~~~~~~-~~~~~~-~~--~~~~~~~~~ 75 (485)
T 1rzu_A 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAA-VTDPVKCF-EFTDLL-GE--KADLLEVQH 75 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCHHHHHH-CCSCEEEE-EESCSS-SC--CEEEEEEEE
T ss_pred CeEEEEeeeeccccccccHHHHHHHHHHHHHHcCCeEEEEeccccccccc-ccccceeE-EEEEec-CC--eEEEEEEEe
Confidence 89999999999975589999999999999999999999999986432110 00000000 000000 10 122333345
Q ss_pred CCeeEEEeCCCCCCcccccC-CCCC------CCchhhhHHHHHHHHHHHHHHc--CCCceEEEECCCchhhHHHHHHHhh
Q 004879 413 EGLPVYFIEPHHPDKFFWRG-QFYG------EHDDFRRFSFFSRAALELLLQA--GKQPDIIHCHDWQTAFVAPLYWDLY 483 (725)
Q Consensus 413 ~GI~V~~I~~~~ps~~F~r~-~~Yg------~~dd~~r~~~FsravlelL~~~--~~kPDIIH~Hdw~sa~vapl~~~~y 483 (725)
.|++++.++.. .+|.+. .+|+ +.++..++.+|++++.++++.. ..+|||||+|+|.+++++ .+....
T Consensus 76 ~gv~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiIh~~~~~~~~~~-~~~~~~ 151 (485)
T 1rzu_A 76 ERLDLLILDAP---AYYERSGGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLPGWRPDMVHAHDWQAAMTP-VYMRYA 151 (485)
T ss_dssp TTEEEEEEECH---HHHCSSSCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSSSCCCSEEEEEHHHHTTHH-HHHHHS
T ss_pred cCceEEEEeCh---HHhCCCccccCCcccccccchHHHHHHHHHHHHHHHHHhccCCCCCEEEecccchhHHH-HHHhhc
Confidence 89999988631 133322 1343 2345567777888887777654 578999999998877763 333321
Q ss_pred ccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhh
Q 004879 484 VPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTS 563 (725)
Q Consensus 484 a~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~ 563 (725)
...++|+|+|+|+..+.+.++...+..+|++...+. ++.+. ++....+++.++..||.|+++|+.+++.+...
T Consensus 152 ---~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~ 224 (485)
T 1rzu_A 152 ---ETPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFG-MEGIE---YYNDVSFLKGGLQTATALSTVSPSYAEEILTA 224 (485)
T ss_dssp ---SSCCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSS-TTTTE---ETTEEEHHHHHHHHCSEEEESCHHHHHHTTSH
T ss_pred ---ccCCCCEEEEecCccccCCCCHHHHhhcCCChhhcc-ccccc---ccccccHHHHHHhhcCEEEecCHhHHHHHhcc
Confidence 125799999999987665554444444454433221 11111 12234567888999999999999998887653
Q ss_pred ccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcC
Q 004879 564 EGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVP 643 (725)
Q Consensus 564 ~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~ 643 (725)
++|.|+...+.....++.+||||||.+.|.|..+..++.+|+.+++.++..++..+|+++|++. .+.++|+|+||+.+
T Consensus 225 ~~g~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~i~~vGrl~~ 302 (485)
T 1rzu_A 225 EFGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRIDD--DGSPLFCVISRLTW 302 (485)
T ss_dssp HHHTTCHHHHHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHTCCC--SSSCEEEEESCBST
T ss_pred ccCcchHHHHHhhcCCceEEcCCCcccccCCcccccccccccccchhhHHHhHHHHHHhcCCCC--CCCeEEEEEccCcc
Confidence 2344444444445679999999999999999877778888998889899999999999999984 23679999999999
Q ss_pred CCCHHHHHHHHHHhhcCCcEEEEEcCCCcc---cccH--------------------HHHHHhcCeEEEcCCcccchHHH
Q 004879 644 QKGVHLIRHAIYRTLELGGQFILLGSSPVP---HIQV--------------------YPILLSSFSFLRKHIFNICNLYI 700 (725)
Q Consensus 644 qKGvdlLieA~~~L~~~~iqLVIvG~Gp~~---~le~--------------------~~iyAaADIfVlPS~~EpfGLv~ 700 (725)
+||++.+++|+..+.+.+++|+|+|+|+.. .+++ ..+|++||++|+||.+|+||+++
T Consensus 303 ~Kg~~~li~a~~~l~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~adv~v~pS~~E~~~~~~ 382 (485)
T 1rzu_A 303 QKGIDLMAEAVDEIVSLGGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAGCDAIIIPSRFEPCGLTQ 382 (485)
T ss_dssp TTTHHHHHTTHHHHHHTTCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHHCSEEEECCSCCSSCSHH
T ss_pred ccCHHHHHHHHHHHHhcCceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhcCCEEEECcccCCCCHHH
Confidence 999999999999987779999999999731 1110 17999999999999999999999
Q ss_pred HHHcCCCccc
Q 004879 701 KLGQGGDLTV 710 (725)
Q Consensus 701 LEAMg~~~~V 710 (725)
+|||+++.||
T Consensus 383 lEAma~G~Pv 392 (485)
T 1rzu_A 383 LYALRYGCIP 392 (485)
T ss_dssp HHHHHHTCEE
T ss_pred HHHHHCCCCE
Confidence 9999655554
No 3
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=1.9e-38 Score=350.76 Aligned_cols=359 Identities=28% Similarity=0.490 Sum_probs=250.4
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeee
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 412 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v 412 (725)
|||++|+++++|....||++.++..|+++|+++||+|+|++|.++..... ....+... ... .+.+ ...+.....
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~-~~~~~~~~-~~~-~~~~---~~~~~~~~~ 74 (485)
T 2qzs_A 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRG-VTDAQVVS-RRD-TFAG---HITLLFGHY 74 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHHTTCEEEEEEECCHHHHHH-CTTCEEEE-EEC-CTTC---CEEEEEEEE
T ss_pred CeEEEEeeeccccccCCcHHHHHHHHHHHHHHcCCEEEEEecCccccccc-cccceeEE-Eec-ccCC---cEEEEEEEE
Confidence 89999999999975689999999999999999999999999976432110 00000000 000 0111 012222335
Q ss_pred CCeeEEEeCCCCCCcccccCC-CCC------CCchhhhHHHHHHHHHHHHHHcC--CCceEEEECCCchhhHHHHHHHhh
Q 004879 413 EGLPVYFIEPHHPDKFFWRGQ-FYG------EHDDFRRFSFFSRAALELLLQAG--KQPDIIHCHDWQTAFVAPLYWDLY 483 (725)
Q Consensus 413 ~GI~V~~I~~~~ps~~F~r~~-~Yg------~~dd~~r~~~FsravlelL~~~~--~kPDIIH~Hdw~sa~vapl~~~~y 483 (725)
+|+++++++.. .+|.+.. +|+ +.++..++.+|++++.++++... .+|||||+|+|.+++++ .+...
T Consensus 75 ~gv~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~~~~-~~~~~- 149 (485)
T 2qzs_A 75 NGVGIYLIDAP---HLYDRPGSPYHDTNLFAYTDNVLRFALLGWVGAEMASGLDPFWRPDVVHAHDWHAGLAP-AYLAA- 149 (485)
T ss_dssp TTEEEEEEECH---HHHCCSSCSSBCTTSCBCTTHHHHHHHHHHHHHHHTTTSSTTCCCSEEEEETGGGTTHH-HHHHH-
T ss_pred CCcEEEEEeCh---hhccCCCCccCCcccCCCCchHHHHHHHHHHHHHHHHHhccCCCCCEEEeeccchhHHH-HHHhh-
Confidence 78999888631 1233322 332 23455667777777777766432 68999999999887763 33331
Q ss_pred ccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhh
Q 004879 484 VPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTS 563 (725)
Q Consensus 484 a~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~ 563 (725)
. ..++|+|+|+|+..+.+.++...+..+|++...+. ...+. ++....+++.++..+|.|+++|+.+++.+...
T Consensus 150 ~---~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~ 222 (485)
T 2qzs_A 150 R---GRPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFN-IHGLE---FNGQISFLKAGLYYADHITAVSPTYAREITEP 222 (485)
T ss_dssp T---TCSSEEEEEESCTTCCCEEEGGGGGTTTCCGGGCS-TTTTE---ETTEEEHHHHHHHHCSEEEESSHHHHHHTTSH
T ss_pred c---cCCCCEEEEecCccccCCCCHHHHHhcCCCchhcc-ccccc---ccccccHHHHHHHhcCeEEecCHHHHHHHhcc
Confidence 1 25899999999987655444333444454433211 00110 12234567888899999999999988877542
Q ss_pred ccCCCcccccccCC--CcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecC
Q 004879 564 EGGQGLHSTLNFHS--KKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRL 641 (725)
Q Consensus 564 ~~g~GL~~~l~~~~--~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL 641 (725)
.+|.++...+..+. .++.+||||||.+.|.|..++.++.+|+.+++.++..++..+|+++|+++ +++.++|+|+||+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~i~~vGrl 301 (485)
T 2qzs_A 223 QFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGLKV-DDKVPLFAVVSRL 301 (485)
T ss_dssp HHHTTCHHHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHHHHHHTCCC-CTTSCEEEEEEEE
T ss_pred ccCcchHHHHHhhccCCceEEEecCCCccccCccccccccccccccchhHHHHhHHHHHHHcCCCC-CCCCeEEEEeccC
Confidence 13322222222223 68999999999999999877777888999888899889999999999973 2356899999999
Q ss_pred cCCCCHHHHHHHHHHhhcCCcEEEEEcCCCcc---cccH--------------------HHHHHhcCeEEEcCCcccchH
Q 004879 642 VPQKGVHLIRHAIYRTLELGGQFILLGSSPVP---HIQV--------------------YPILLSSFSFLRKHIFNICNL 698 (725)
Q Consensus 642 ~~qKGvdlLieA~~~L~~~~iqLVIvG~Gp~~---~le~--------------------~~iyAaADIfVlPS~~EpfGL 698 (725)
.++||++.+++|+..+.+.+++|+|+|+|+.. .+++ ..+|++||++|+||.+|+||+
T Consensus 302 ~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~adv~v~pS~~E~~g~ 381 (485)
T 2qzs_A 302 TSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGL 381 (485)
T ss_dssp SGGGCHHHHHHHHHHHHHTTCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHHCSEEEECCSCCSSCS
T ss_pred ccccCHHHHHHHHHHHhhCCcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHhCCEEEECCccCCCcH
Confidence 99999999999999987778999999998631 1110 189999999999999999999
Q ss_pred HHHHHcCCCccc
Q 004879 699 YIKLGQGGDLTV 710 (725)
Q Consensus 699 v~LEAMg~~~~V 710 (725)
+++|||+++.||
T Consensus 382 ~~lEAma~G~Pv 393 (485)
T 2qzs_A 382 TQLYGLKYGTLP 393 (485)
T ss_dssp HHHHHHHHTCEE
T ss_pred HHHHHHHCCCCE
Confidence 999999655553
No 4
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=4.8e-36 Score=323.07 Aligned_cols=330 Identities=25% Similarity=0.325 Sum_probs=243.1
Q ss_pred CCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEee
Q 004879 331 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVS 410 (725)
Q Consensus 331 ~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~ 410 (725)
++|||++++++++| ...||++.++..|+++|+++||+|+|++|.++......+..++ . | +....++++..
T Consensus 1 r~MkIl~v~~~~~p-~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~-------~-~-~~~~~~~~~~~ 70 (439)
T 3fro_A 1 RHMKVLLLGFEFLP-VKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEEIGKIR-------V-F-GEEVQVKVSYE 70 (439)
T ss_dssp CCCEEEEECSCCTT-SCSSSHHHHHHHHHHHHHHTTCEEEEEEECTTCSCCEEEEEEE-------E-T-TEEEEEEEEEE
T ss_pred CceEEEEEecccCC-cccCCHHHHHHHHHHHHHHCCCeEEEEecCCCCchhhhhcccc-------c-c-Ccccceeeeec
Confidence 47999999999999 4689999999999999999999999999998765432111111 0 1 12234556666
Q ss_pred eeCCeeEEEeCCCCCCcccccCCCCC-CCch-hhhHHHHHHHHHHHHHHc---CCCceEEEECCCchhhHHHHHHHhhcc
Q 004879 411 TIEGLPVYFIEPHHPDKFFWRGQFYG-EHDD-FRRFSFFSRAALELLLQA---GKQPDIIHCHDWQTAFVAPLYWDLYVP 485 (725)
Q Consensus 411 ~v~GI~V~~I~~~~ps~~F~r~~~Yg-~~dd-~~r~~~FsravlelL~~~---~~kPDIIH~Hdw~sa~vapl~~~~ya~ 485 (725)
..+|++++.++. .+|.+...|+ +.++ ..++..|++++..++++. ..+|||||+|+|.+++++ .+....
T Consensus 71 ~~~gv~v~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~-~~~~~~-- 143 (439)
T 3fro_A 71 ERGNLRIYRIGG----GLLDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHTVFAG-ALIKKY-- 143 (439)
T ss_dssp EETTEEEEEEES----GGGGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGGGHHHH-HHHHHH--
T ss_pred cCCCceEEEecc----hhccccccccCCcchhhhhhHHHHHHHHHHHHHHhccCCCCeEEEecchhhhhhH-HHHhhc--
Confidence 779999999975 2677767776 4455 677778999988888876 679999999999887764 333321
Q ss_pred CCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhcc
Q 004879 486 KGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEG 565 (725)
Q Consensus 486 ~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~ 565 (725)
.++|+|+|+|+....+ .+...+...++.. ..+.....+++..+..||.|+++|+.+++....
T Consensus 144 ---~~~~~v~~~h~~~~~~-~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~~--- 205 (439)
T 3fro_A 144 ---FKIPAVFTIHRLNKSK-LPAFYFHEAGLSE-----------LAPYPDIDPEHTGGYIADIVTTVSRGYLIDEWG--- 205 (439)
T ss_dssp ---HCCCEEEEESCCCCCC-EEHHHHHHTTCGG-----------GCCSSEECHHHHHHHHCSEEEESCHHHHHHTHH---
T ss_pred ---cCCCEEEEeccccccc-CchHHhCcccccc-----------ccccceeeHhhhhhhhccEEEecCHHHHHHHhh---
Confidence 4799999999986332 1221111111110 001223456788899999999999988877332
Q ss_pred CCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCc-CC
Q 004879 566 GQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLV-PQ 644 (725)
Q Consensus 566 g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~-~q 644 (725)
.+.....++.+||||+|.+.|.|...+ .++...+..+++++|+++ + ++|+|+||+. ++
T Consensus 206 ------~~~~~~~~i~vi~ngvd~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~---~-~~i~~~G~~~~~~ 264 (439)
T 3fro_A 206 ------FFRNFEGKITYVFNGIDCSFWNESYLT-----------GSRDERKKSLLSKFGMDE---G-VTFMFIGRFDRGQ 264 (439)
T ss_dssp ------HHGGGTTSEEECCCCCCTTTSCGGGSC-----------SCHHHHHHHHHHHHTCCS---C-EEEEEECCSSCTT
T ss_pred ------hhhhcCCceeecCCCCCchhcCccccc-----------chhhhhHHHHHHHcCCCC---C-cEEEEEccccccc
Confidence 112356799999999999999874210 123457889999999973 4 9999999999 99
Q ss_pred CCHHHHHHHHHHhhc----CCcEEEEEcCCCcc--c-ccH--------------------HHHHHhcCeEEEcCCcccch
Q 004879 645 KGVHLIRHAIYRTLE----LGGQFILLGSSPVP--H-IQV--------------------YPILLSSFSFLRKHIFNICN 697 (725)
Q Consensus 645 KGvdlLieA~~~L~~----~~iqLVIvG~Gp~~--~-le~--------------------~~iyAaADIfVlPS~~EpfG 697 (725)
||++.+++|+..+.+ .+++|+|+|+|+.. . +++ ..+|++||++|+||.+|+||
T Consensus 265 Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~ 344 (439)
T 3fro_A 265 KGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFG 344 (439)
T ss_dssp BCHHHHHHHHHHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHTTCSEEEECBSCCSSC
T ss_pred ccHHHHHHHHHHHHhcccCCCeEEEEEcCCChhHHHHHHHHHhhcCCEEEEcCCCCHHHHHHHHHHCCEEEeCCCCCCcc
Confidence 999999999999976 58999999999853 1 111 18999999999999999999
Q ss_pred HHHHHHcCCCcccc-CCCCC
Q 004879 698 LYIKLGQGGDLTVN-NNCEP 716 (725)
Q Consensus 698 Lv~LEAMg~~~~V~-~~~~G 716 (725)
++++|||+++.||+ ++++|
T Consensus 345 ~~~~EAma~G~Pvi~s~~~~ 364 (439)
T 3fro_A 345 LVALEAMCLGAIPIASAVGG 364 (439)
T ss_dssp HHHHHHHHTTCEEEEESSTH
T ss_pred HHHHHHHHCCCCeEEcCCCC
Confidence 99999997777654 44433
No 5
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=99.97 E-value=1.2e-30 Score=300.27 Aligned_cols=297 Identities=18% Similarity=0.119 Sum_probs=190.8
Q ss_pred eEEEEcCccCCCCCCCcHHHHHHHHHHHHHH-CCCeEEEEeeCCCCCccccccccccccee--------eee-----ccC
Q 004879 334 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQK-KGHLVEIVLPKYDCMQYDRIDDLRALDVV--------VES-----YFD 399 (725)
Q Consensus 334 kILhIs~E~~P~~kvGGlg~vV~~LaraL~~-~GHeV~VItP~y~~l~~~~v~~L~~l~~~--------i~~-----~f~ 399 (725)
-+.=+++|.+- +|||+-+|+..-|+.+.+ .|-++..|.|........+++.+..-+.. +.. .-.
T Consensus 29 ~lfE~swEV~N--kVGGIyTVl~tka~~~~~~~gd~y~~iGP~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (725)
T 3nb0_A 29 LLFETATEVAN--RVGGIYSVLKSKAPITVAQYKDHYHLIGPLNKATYQNEVDILDWKKPEAFSDEMRPVQHALQTMESR 106 (725)
T ss_dssp EEEEEETTTTS--CSSHHHHHHHHHHHHHHHHHGGGEEEEEECCTTTHHHHEEECCSSSGGGSCSTTHHHHHHHHHHHTT
T ss_pred eEEeeehhhhc--ccCCeEEEEecchhHHHHHhCCeEEEECCCCCCcCCcceeecCCCCchhhcchhHHHHHHHHHHHHC
Confidence 36668899875 799999999999998886 58899999996332211111111000000 000 001
Q ss_pred CcceeeeeEeeeeCCee-EEEeCCCCCCccccc----------------CCCCCCCchhhhHHHHHHHHHHHHHHcC-CC
Q 004879 400 GRLFKNKVWVSTIEGLP-VYFIEPHHPDKFFWR----------------GQFYGEHDDFRRFSFFSRAALELLLQAG-KQ 461 (725)
Q Consensus 400 g~~~~~rV~~~~v~GI~-V~~I~~~~ps~~F~r----------------~~~Yg~~dd~~r~~~FsravlelL~~~~-~k 461 (725)
| +++++-+..++|-| |.+++.. .+++. ...|++.++..+|+||++++++.+.... ++
T Consensus 107 G--~~v~~GrW~i~G~P~viL~d~~---~~~~~~~~~~~~lw~~~~i~s~~~yg~~dd~~~F~y~~~avl~~l~~~~~~~ 181 (725)
T 3nb0_A 107 G--VHFVYGRWLIEGAPKVILFDLD---SVRGYSNEWKGDLWSLVGIPSPENDFETNDAILLGYTVAWFLGEVAHLDSQH 181 (725)
T ss_dssp T--CCEEEEEESSTTCCEEEEECSG---GGGGGHHHHHHHHHHHHCCCCCSSCHHHHHHHHHHHHHHHHHHHHHHHCCSE
T ss_pred C--CeEEEEEEecCCCceEEEEeCh---HHHHHHHHHHHHHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHHhcCCCC
Confidence 2 23444444678877 4444532 13332 1234445789999999999998887665 78
Q ss_pred ceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCCc---c---cCCCCh-hhhhhcCCcccccCCccccccccccc
Q 004879 462 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFE---Y---QGTAPA-KELASCGLDVQQLNRPDRMQDNSAHD 534 (725)
Q Consensus 462 PDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~---~---qg~~p~-~~l~~~Gl~~~~l~~~~~l~d~~~~~ 534 (725)
|||+|||+|+++.+ +.+++.. ..++|+|+|+|+.. + ||.++. ..+...+++... ..+ .++.
T Consensus 182 pdIiH~HDW~tg~~-~~~Lk~~----~~~i~tVfTiH~telGR~lagqg~~~~y~~L~~~~~d~ea----~~~---~i~~ 249 (725)
T 3nb0_A 182 AIVAHFHEWLAGVA-LPLCRKR----RIDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEA----GRF---GIYH 249 (725)
T ss_dssp EEEEEEESGGGCTH-HHHHHHT----TCSCEEEEEESSCHHHHHHTSSSCSCHHHHGGGCCHHHHH----HHT---TCHH
T ss_pred CcEEEeCchhhhHH-HHHHHHh----CCCCCEEEEEecchhhhhhhhcCCCchhhhhhhcCCChhh----hhh---chhH
Confidence 99999999999997 5565532 25899999999985 3 454432 112222222111 011 1456
Q ss_pred chhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhh
Q 004879 535 RINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAE 614 (725)
Q Consensus 535 ~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~ 614 (725)
..+++|.++.+||.|||||+.|++++.. .+ ..+.+.+ ||||||++.|+|... ....|..
T Consensus 250 ~~~~EKaga~~AD~ITTVS~~yA~Ei~~-Ll--------~r~~d~i--IpNGID~~~f~p~~~----------~~~~k~~ 308 (725)
T 3nb0_A 250 RYCIERAAAHSADVFTTVSQITAFEAEH-LL--------KRKPDGI--LPNGLNVIKFQAFHE----------FQNLHAL 308 (725)
T ss_dssp HHHHHHHHHHHSSEEEESSHHHHHHHHH-HT--------SSCCSEE--CCCCBCCCCCSSTTH----------HHHHHHH
T ss_pred HHHHHHHHHHhCCEEEECCHHHHHHHHH-Hh--------cCCCCEE--EcCCccccccCcchh----------hHHHHHH
Confidence 7889999999999999999999999875 22 2334433 999999999999521 1123445
Q ss_pred hHHHHHHHc------CCCCCCCCCCEEEEeecCc-CCCCHHHHHHHHHHhhcC---------CcEEEEEcCC
Q 004879 615 NKESIRKHL------GLSSADARKPLVGCITRLV-PQKGVHLIRHAIYRTLEL---------GGQFILLGSS 670 (725)
Q Consensus 615 ~K~aLRk~l------GL~~~d~~~plV~fVGRL~-~qKGvdlLieA~~~L~~~---------~iqLVIvG~G 670 (725)
+|..+++.+ |++-...+.++++.+||+. .+||++++++|+.++... -+.|+|+..+
T Consensus 309 aK~klq~~l~~~~~~~l~l~~dk~liifivgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vvafii~p~~ 380 (725)
T 3nb0_A 309 KKEKINDFVRGHFHGCFDFDLDNTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAK 380 (725)
T ss_dssp HHHHHHHHHHHHTTTCCCSCGGGEEEEEEESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCC
T ss_pred HHHHHHHHHHhhcccCCCCCCCceeEEEEEEEeccccCCHHHHHHHHHHHHHHHhhccCCCcEEEEEEeCCC
Confidence 666665433 2321012445666789999 799999999999988731 2568887654
No 6
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=99.97 E-value=3.2e-29 Score=272.09 Aligned_cols=305 Identities=18% Similarity=0.205 Sum_probs=198.7
Q ss_pred CCCCCeEEEEcCccCCCC-----CCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcce
Q 004879 329 ISSGLHVIHIAAEMAPVA-----KVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLF 403 (725)
Q Consensus 329 ~~~~MkILhIs~E~~P~~-----kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~ 403 (725)
..++|||++|+..|+|.. ..||.+.++..|+++|.++||+|+|+++........
T Consensus 17 ~~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~--------------------- 75 (438)
T 3c48_A 17 RGSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQGE--------------------- 75 (438)
T ss_dssp --CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEECCCGGGCS---------------------
T ss_pred CcchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEecCCCCCCcc---------------------
Confidence 466799999999998852 369999999999999999999999999875421100
Q ss_pred eeeeEeeeeCCeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHH-HHHcCCCceEEEECCCchhhHHHHHHHh
Q 004879 404 KNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALEL-LLQAGKQPDIIHCHDWQTAFVAPLYWDL 482 (725)
Q Consensus 404 ~~rV~~~~v~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~Fsravlel-L~~~~~kPDIIH~Hdw~sa~vapl~~~~ 482 (725)
.....+|+.++.++... +. .....+-...+..|.+.++.+ +++. .+|||||+|+|.+++++..+...
T Consensus 76 ----~~~~~~~v~v~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Div~~~~~~~~~~~~~~~~~ 143 (438)
T 3c48_A 76 ----IVRVAENLRVINIAAGP---YE----GLSKEELPTQLAAFTGGMLSFTRREK-VTYDLIHSHYWLSGQVGWLLRDL 143 (438)
T ss_dssp ----EEEEETTEEEEEECCSC---SS----SCCGGGGGGGHHHHHHHHHHHHHHHT-CCCSEEEEEHHHHHHHHHHHHHH
T ss_pred ----cccccCCeEEEEecCCC---cc----ccchhHHHHHHHHHHHHHHHHHHhcc-CCCCEEEeCCccHHHHHHHHHHH
Confidence 00123577777665311 00 000001111122344445554 4432 24999999988766653222221
Q ss_pred hccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHh
Q 004879 483 YVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRT 562 (725)
Q Consensus 483 ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~ 562 (725)
.++|+|+|+|+........ +.. + .... ......+.+..+..+|.|+++|+..++.+..
T Consensus 144 ------~~~p~v~~~h~~~~~~~~~---~~~-~---------~~~~---~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~ 201 (438)
T 3c48_A 144 ------WRIPLIHTAHTLAAVKNSY---RDD-S---------DTPE---SEARRICEQQLVDNADVLAVNTQEEMQDLMH 201 (438)
T ss_dssp ------HTCCEEEECSSCHHHHSCC-----------------CCHH---HHHHHHHHHHHHHHCSEEEESSHHHHHHHHH
T ss_pred ------cCCCEEEEecCCccccccc---ccc-c---------CCcc---hHHHHHHHHHHHhcCCEEEEcCHHHHHHHHH
Confidence 3789999999874211000 000 0 0000 0011224567788999999999998888765
Q ss_pred hccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCc
Q 004879 563 SEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLV 642 (725)
Q Consensus 563 ~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~ 642 (725)
. +| .+..++.+||||+|...|.|... ..+..+|+.+|+++ +.++|+|+||+.
T Consensus 202 ~-~g--------~~~~k~~vi~ngvd~~~~~~~~~----------------~~~~~~r~~~~~~~---~~~~i~~~G~~~ 253 (438)
T 3c48_A 202 H-YD--------ADPDRISVVSPGADVELYSPGND----------------RATERSRRELGIPL---HTKVVAFVGRLQ 253 (438)
T ss_dssp H-HC--------CCGGGEEECCCCCCTTTSCCC--------------------CHHHHHHTTCCS---SSEEEEEESCBS
T ss_pred H-hC--------CChhheEEecCCccccccCCccc----------------chhhhhHHhcCCCC---CCcEEEEEeeec
Confidence 2 22 24578999999999998877421 12345788999873 678999999999
Q ss_pred CCCCHHHHHHHHHHhhcC----CcEEEEEcC----CCccc-ccH----------------------HHHHHhcCeEEEcC
Q 004879 643 PQKGVHLIRHAIYRTLEL----GGQFILLGS----SPVPH-IQV----------------------YPILLSSFSFLRKH 691 (725)
Q Consensus 643 ~qKGvdlLieA~~~L~~~----~iqLVIvG~----Gp~~~-le~----------------------~~iyAaADIfVlPS 691 (725)
++||++.+++|+..+.+. +++|+|+|+ |+... +++ ..+|+.||++|+||
T Consensus 254 ~~Kg~~~li~a~~~l~~~~p~~~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~adv~v~ps 333 (438)
T 3c48_A 254 PFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPS 333 (438)
T ss_dssp GGGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHHCSEEEECC
T ss_pred ccCCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHhCCEEEECc
Confidence 999999999999998753 689999998 65321 111 18999999999999
Q ss_pred CcccchHHHHHHcCCCcccc-CCCCC
Q 004879 692 IFNICNLYIKLGQGGDLTVN-NNCEP 716 (725)
Q Consensus 692 ~~EpfGLv~LEAMg~~~~V~-~~~~G 716 (725)
.+|+||++++|||+++.||+ ++++|
T Consensus 334 ~~e~~~~~~~Eama~G~PvI~~~~~~ 359 (438)
T 3c48_A 334 FNESFGLVAMEAQASGTPVIAARVGG 359 (438)
T ss_dssp SCCSSCHHHHHHHHTTCCEEEESCTT
T ss_pred cccCCchHHHHHHHcCCCEEecCCCC
Confidence 99999999999997766654 33433
No 7
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=99.97 E-value=4.3e-29 Score=277.66 Aligned_cols=319 Identities=16% Similarity=0.153 Sum_probs=202.0
Q ss_pred CCeEEEEcCccCCCC---------CCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcc
Q 004879 332 GLHVIHIAAEMAPVA---------KVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRL 402 (725)
Q Consensus 332 ~MkILhIs~E~~P~~---------kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~ 402 (725)
+|||++|++.++|.. ..||++.++..|+++|.++||+|+|+++........ .. ...
T Consensus 7 ~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~---~~-----------~~~- 71 (499)
T 2r60_A 7 IKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIITRRIKDENWP---EF-----------SGE- 71 (499)
T ss_dssp CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEEECCCBTTBG---GG-----------CCS-
T ss_pred cceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcCCeEEEEeCCCCccccc---ch-----------hhh-
Confidence 599999999988842 479999999999999999999999999875421100 00 000
Q ss_pred eeeeeEe-eeeCCeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHH
Q 004879 403 FKNKVWV-STIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWD 481 (725)
Q Consensus 403 ~~~rV~~-~~v~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~ 481 (725)
+.. ....|++++.++.. +..++.....+ .....|...+..++++.+.+|||||+|++.+++++.++..
T Consensus 72 ----~~~~~~~~gv~v~~~~~~-~~~~~~~~~~~------~~~~~~~~~l~~~l~~~~~~~Divh~~~~~~~~~~~~~~~ 140 (499)
T 2r60_A 72 ----IDYYQETNKVRIVRIPFG-GDKFLPKEELW------PYLHEYVNKIINFYREEGKFPQVVTTHYGDGGLAGVLLKN 140 (499)
T ss_dssp ----EEECTTCSSEEEEEECCS-CSSCCCGGGCG------GGHHHHHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHHH
T ss_pred ----HHhccCCCCeEEEEecCC-CcCCcCHHHHH------HHHHHHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHH
Confidence 000 00357777777531 11011110111 1112234455566665445899999998766655332222
Q ss_pred hhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHH
Q 004879 482 LYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVR 561 (725)
Q Consensus 482 ~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~ 561 (725)
. .++|+|+|+|+...... ..+...+.....+. .. ..+.....+.+..+..||.|+++|+..++.+.
T Consensus 141 ~------~~~p~v~~~H~~~~~~~---~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~ 206 (499)
T 2r60_A 141 I------KGLPFTFTGHSLGAQKM---EKLNVNTSNFKEMD---ER--FKFHRRIIAERLTMSYADKIIVSTSQERFGQY 206 (499)
T ss_dssp H------HCCCEEEECSSCHHHHH---HTTCCCSTTSHHHH---HH--HCHHHHHHHHHHHHHHCSEEEESSHHHHHHTT
T ss_pred h------cCCcEEEEccCcccccc---hhhccCCCCcchhh---hh--HHHHHHHHHHHHHHhcCCEEEECCHHHHHHHH
Confidence 1 37899999999742100 00000000000000 00 00001123457788899999999998888765
Q ss_pred hhc-cCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcC-----CCCCCCCCCEE
Q 004879 562 TSE-GGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLG-----LSSADARKPLV 635 (725)
Q Consensus 562 ~~~-~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lG-----L~~~d~~~plV 635 (725)
... +|. +.+ .....++.+||||||.+.|.|.. +...+..+|+++| +++ +.++|
T Consensus 207 ~~~~~g~-~~~--~~~~~ki~vi~ngvd~~~~~~~~---------------~~~~~~~~r~~~~~~~~~~~~---~~~~i 265 (499)
T 2r60_A 207 SHDLYRG-AVN--VEDDDKFSVIPPGVNTRVFDGEY---------------GDKIKAKITKYLERDLGSERM---ELPAI 265 (499)
T ss_dssp TSGGGTT-TCC--TTCGGGEEECCCCBCTTTSSSCC---------------CHHHHHHHHHHHHHHSCGGGT---TSCEE
T ss_pred hhhcccc-ccc--ccCCCCeEEECCCcChhhcCccc---------------hhhhHHHHHHHhcccccccCC---CCcEE
Confidence 420 110 000 00346899999999999887742 1224567888888 763 67899
Q ss_pred EEeecCcCCCCHHHHHHHHHHhhcC---CcEEEEEcC--CC--------------cccccH-------------------
Q 004879 636 GCITRLVPQKGVHLIRHAIYRTLEL---GGQFILLGS--SP--------------VPHIQV------------------- 677 (725)
Q Consensus 636 ~fVGRL~~qKGvdlLieA~~~L~~~---~iqLVIvG~--Gp--------------~~~le~------------------- 677 (725)
+|+||+.++||++.+++|+..+.+. ..+|+|+|+ |+ ...+++
T Consensus 266 ~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~v~~ 345 (499)
T 2r60_A 266 IASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNSQ 345 (499)
T ss_dssp EECSCCCGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEECCSH
T ss_pred EEeecCccccCHHHHHHHHHHHHHhCCCceEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECCCCCH
Confidence 9999999999999999999988652 468999998 44 111111
Q ss_pred ---HHHHHhc----CeEEEcCCcccchHHHHHHcCCCcccc
Q 004879 678 ---YPILLSS----FSFLRKHIFNICNLYIKLGQGGDLTVN 711 (725)
Q Consensus 678 ---~~iyAaA----DIfVlPS~~EpfGLv~LEAMg~~~~V~ 711 (725)
..+|++| |++|+||.+|+||++++|||+++.||+
T Consensus 346 ~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI 386 (499)
T 2r60_A 346 QELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAV 386 (499)
T ss_dssp HHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEE
T ss_pred HHHHHHHHhcCcCCCEEEECcccCCCCcHHHHHHHcCCCEE
Confidence 1899999 999999999999999999997766643
No 8
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=99.96 E-value=1.2e-28 Score=292.32 Aligned_cols=353 Identities=15% Similarity=0.159 Sum_probs=212.0
Q ss_pred hhhhhhchhhHHHHhhhccCCCCCCCCeEEEEcCccC---------CCCCCCcHHHHHHH--------HHHHHHHCCCeE
Q 004879 307 MECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMA---------PVAKVGGLGDVVAG--------LGKALQKKGHLV 369 (725)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~MkILhIs~E~~---------P~~kvGGlg~vV~~--------LaraL~~~GHeV 369 (725)
.++-+..|+..|..|++..+. .|+|++|+.+.+ |- +||.-.||.+ |+++|+++||+|
T Consensus 257 ~~~~~~p~~~~~~~~~~~~~~----~~~i~~is~hg~~~~~~~lG~~d--tGGq~vyV~e~~~al~~ela~~L~~~G~~V 330 (816)
T 3s28_A 257 LDLLEAPDPCTLETFLGRVPM----VFNVVILSPHGYFAQDNVLGYPD--TGGQVVYILDQVRALEIEMLQRIKQQGLNI 330 (816)
T ss_dssp HHHHHSCCHHHHHHHHHHSCC----CCEEEEECCSSCCCSSSCTTSTT--CSHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHhcCCCcccHHHHhccCCc----eeEEEEEcCCcccCccccCCCCC--CCCceeeHHHHHHHHHHHHHHHHHHCCCcc
Confidence 355567778788877765543 489999999987 64 8999999995 666667799988
Q ss_pred E----EEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeeeCCeeEEEeCCCCCC-----cccccCCCCCCCch
Q 004879 370 E----IVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPD-----KFFWRGQFYGEHDD 440 (725)
Q Consensus 370 ~----VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v~GI~V~~I~~~~ps-----~~F~r~~~Yg~~dd 440 (725)
+ |+|....+..... |..+. . .....+|+.++.++.. |. +++.+...+++
T Consensus 331 ~~~V~v~Tr~~~~~~g~~--------------y~~~~---e-~i~~~~gv~I~RvP~~-~~~g~l~~~l~k~~L~~~--- 388 (816)
T 3s28_A 331 KPRILILTRLLPDAVGTT--------------CGERL---E-RVYDSEYCDILRVPFR-TEKGIVRKWISRFEVWPY--- 388 (816)
T ss_dssp CCEEEEEEECCTTCTTSS--------------TTSSE---E-ECTTCSSEEEEEECEE-ETTEEECSCCCTTTCGGG---
T ss_pred ceeeEEEeCCCCCCCCCc--------------cCCcc---e-eecCcCCeEEEEecCC-CccccccccccHHHHHHH---
Confidence 6 8887754321000 00000 0 0001246666666421 10 11222222221
Q ss_pred hhhHHHHH-HHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCccc
Q 004879 441 FRRFSFFS-RAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQ 519 (725)
Q Consensus 441 ~~r~~~Fs-ravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~ 519 (725)
...|. .++..+++..+.+|||||+|+|.+++++.++... .++|+|+|+|++....... .+..+.
T Consensus 389 ---L~~F~~~~l~~il~~~~~~PDVIHsH~~~sglva~llar~------~gvP~V~T~Hsl~~~k~~~------~~~~~~ 453 (816)
T 3s28_A 389 ---LETYTEDAAVELSKELNGKPDLIIGNYSDGNLVASLLAHK------LGVTQCTIAHALEKTKYPD------SDIYWK 453 (816)
T ss_dssp ---HHHHHHHHHHHHHHHCSSCCSEEEEEHHHHHHHHHHHHHH------HTCCEEEECSCCHHHHSTT------TTTTHH
T ss_pred ---HHHHHHHHHHHHHHhcCCCCeEEEeCCchHHHHHHHHHHH------cCCCEEEEEeccccccccc------ccchhh
Confidence 12244 4444555555668999999999988875443332 4799999999874221110 010000
Q ss_pred ccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcc------c---c---cccCCCcEEEEeCCc
Q 004879 520 QLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLH------S---T---LNFHSKKFVGILNGI 587 (725)
Q Consensus 520 ~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~------~---~---l~~~~~Kv~vIpNGI 587 (725)
.+. .. +.+..++...+.++..||.|||+|+..++.+......++.. . . +.....|+.+|||||
T Consensus 454 ~~~--~~---y~~~~r~~aE~~~l~~AD~VIa~S~~~~~~l~~~~~~y~~~~~~~~p~Lyr~~~gI~~~~~ki~VIpnGV 528 (816)
T 3s28_A 454 KLD--DK---YHFSCQFTADIFAMNHTDFIITSTFQEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGA 528 (816)
T ss_dssp HHH--HH---HCHHHHHHHHHHHHHHSSEEEESCHHHHHCCSSSCCTTGGGSSEEETTTEEEEESCCTTCTTEEECCCCC
T ss_pred hHH--HH---HHHHHHHHHHHHHHHhCCEEEECCHHHHHHHHHHHHHhhhhhccccchhhhcccccccCCCCEEEECCCc
Confidence 000 00 00111223356689999999999998877532211001100 0 0 011233999999999
Q ss_pred cCCCCCCCCcch--hhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhc--CCcE
Q 004879 588 DTDAWNPATDTF--LKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQ 663 (725)
Q Consensus 588 D~~~f~P~~d~~--l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~--~~iq 663 (725)
|.+.|.|..+.. +...+.. +.....+....++.+|+.. +++.++|+|+||+.++||++.+++|+..+.+ .+++
T Consensus 529 D~~~F~P~~~~~~Rl~~~~~~--i~~~l~~p~~~r~~lg~l~-~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~ 605 (816)
T 3s28_A 529 DMSIYFPYTEEKRRLTKFHSE--IEELLYSDVENKEHLCVLK-DKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELAN 605 (816)
T ss_dssp CTTTSCCTTCTTTCCGGGHHH--HHHHHHCSCCBTTEESCBS-CTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCE
T ss_pred CHHHcCccchhhhhhhhcccc--ccccccchhhHHHHhcccC-CCCCeEEEEEccCcccCCHHHHHHHHHHHHhhCCCeE
Confidence 999998864321 0000000 0000001112345677632 3478999999999999999999999999875 4799
Q ss_pred EEEEcCCCc-----------c-cccH-----------------------H---HHHH-hcCeEEEcCCcccchHHHHHHc
Q 004879 664 FILLGSSPV-----------P-HIQV-----------------------Y---PILL-SSFSFLRKHIFNICNLYIKLGQ 704 (725)
Q Consensus 664 LVIvG~Gp~-----------~-~le~-----------------------~---~iyA-aADIfVlPS~~EpfGLv~LEAM 704 (725)
|+|+|+|+. . .+++ . .+|+ +||+||+||.+|+||++++|||
T Consensus 606 LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAM 685 (816)
T 3s28_A 606 LVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAM 685 (816)
T ss_dssp EEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHH
T ss_pred EEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEEccCccccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHHH
Confidence 999999982 0 0100 1 5555 7899999999999999999999
Q ss_pred CCCccc
Q 004879 705 GGDLTV 710 (725)
Q Consensus 705 g~~~~V 710 (725)
+++.||
T Consensus 686 A~G~PV 691 (816)
T 3s28_A 686 TCGLPT 691 (816)
T ss_dssp HTTCCE
T ss_pred HcCCCE
Confidence 666654
No 9
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=99.96 E-value=1e-27 Score=254.96 Aligned_cols=282 Identities=16% Similarity=0.197 Sum_probs=198.0
Q ss_pred CCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEe
Q 004879 330 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWV 409 (725)
Q Consensus 330 ~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~ 409 (725)
+++|||++++..++|. .||.+.++..|+++| +||+|+|+++......... . +
T Consensus 2 ~~~mkIl~v~~~~~p~--~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~~~~---~-----------~---------- 53 (394)
T 3okp_A 2 SASRKTLVVTNDFPPR--IGGIQSYLRDFIATQ--DPESIVVFASTQNAEEAHA---Y-----------D---------- 53 (394)
T ss_dssp --CCCEEEEESCCTTS--CSHHHHHHHHHHTTS--CGGGEEEEEECSSHHHHHH---H-----------H----------
T ss_pred CCCceEEEEeCccCCc--cchHHHHHHHHHHHh--cCCeEEEEECCCCccchhh---h-----------c----------
Confidence 3569999999998886 799999999999999 6999999998854321000 0 0
Q ss_pred eeeCCeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCC
Q 004879 410 STIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLN 489 (725)
Q Consensus 410 ~~v~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~ 489 (725)
...|++++.++.. ..+.. ..+.+.+..++++ .+|||||+|.+........+... .
T Consensus 54 -~~~~~~~~~~~~~---------~~~~~-------~~~~~~l~~~~~~--~~~Dvv~~~~~~~~~~~~~~~~~------~ 108 (394)
T 3okp_A 54 -KTLDYEVIRWPRS---------VMLPT-------PTTAHAMAEIIRE--REIDNVWFGAAAPLALMAGTAKQ------A 108 (394)
T ss_dssp -TTCSSEEEEESSS---------SCCSC-------HHHHHHHHHHHHH--TTCSEEEESSCTTGGGGHHHHHH------T
T ss_pred -cccceEEEEcccc---------ccccc-------hhhHHHHHHHHHh--cCCCEEEECCcchHHHHHHHHHh------c
Confidence 1235555555421 01110 1233445556664 58999999976543221222222 2
Q ss_pred CCc-EEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCC
Q 004879 490 SAR-VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQG 568 (725)
Q Consensus 490 ~ip-iV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~G 568 (725)
++| +|+++|+..+.... ......+++..+..+|.|+++|+..++.+...+ +
T Consensus 109 ~~~~~i~~~h~~~~~~~~-------------------------~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~-~-- 160 (394)
T 3okp_A 109 GASKVIASTHGHEVGWSM-------------------------LPGSRQSLRKIGTEVDVLTYISQYTLRRFKSAF-G-- 160 (394)
T ss_dssp TCSEEEEECCSTHHHHTT-------------------------SHHHHHHHHHHHHHCSEEEESCHHHHHHHHHHH-C--
T ss_pred CCCcEEEEeccchhhhhh-------------------------cchhhHHHHHHHHhCCEEEEcCHHHHHHHHHhc-C--
Confidence 554 99999986421000 001123456778899999999999988876532 1
Q ss_pred cccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHH
Q 004879 569 LHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVH 648 (725)
Q Consensus 569 L~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvd 648 (725)
...++.+||||+|...|.|.. ...+..+++.+|+++ +.++|+|+||+.++||++
T Consensus 161 -------~~~~~~vi~ngv~~~~~~~~~----------------~~~~~~~~~~~~~~~---~~~~i~~~G~~~~~Kg~~ 214 (394)
T 3okp_A 161 -------SHPTFEHLPSGVDVKRFTPAT----------------PEDKSATRKKLGFTD---TTPVIACNSRLVPRKGQD 214 (394)
T ss_dssp -------SSSEEEECCCCBCTTTSCCCC----------------HHHHHHHHHHTTCCT---TCCEEEEESCSCGGGCHH
T ss_pred -------CCCCeEEecCCcCHHHcCCCC----------------chhhHHHHHhcCCCc---CceEEEEEeccccccCHH
Confidence 246899999999999888742 235678899999973 668999999999999999
Q ss_pred HHHHHHHHhhc--CCcEEEEEcCCCccc-ccH--------------------HHHHHhcCeEEEcCCc-------ccchH
Q 004879 649 LIRHAIYRTLE--LGGQFILLGSSPVPH-IQV--------------------YPILLSSFSFLRKHIF-------NICNL 698 (725)
Q Consensus 649 lLieA~~~L~~--~~iqLVIvG~Gp~~~-le~--------------------~~iyAaADIfVlPS~~-------EpfGL 698 (725)
.+++|+..+.+ .+++|+|+|+|+... +++ ..+|+.||++|+||.+ |+||+
T Consensus 215 ~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~ps~~~~~~~~~e~~~~ 294 (394)
T 3okp_A 215 SLIKAMPQVIAARPDAQLLIVGSGRYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVEGLGI 294 (394)
T ss_dssp HHHHHHHHHHHHSTTCEEEEECCCTTHHHHHHHTGGGGGGEEEEESCCHHHHHHHHHHCSEEEECCCCBGGGTBCCSSCH
T ss_pred HHHHHHHHHHhhCCCeEEEEEcCchHHHHHHHHHhcccCeEEEcCCCCHHHHHHHHHhCCEEEecCccccccccccccCc
Confidence 99999999875 489999999987542 111 1899999999999999 99999
Q ss_pred HHHHHcCCCcccc-CCCCCce
Q 004879 699 YIKLGQGGDLTVN-NNCEPWL 718 (725)
Q Consensus 699 v~LEAMg~~~~V~-~~~~G~l 718 (725)
+++|||+++.||+ ++++|.-
T Consensus 295 ~~~Ea~a~G~PvI~~~~~~~~ 315 (394)
T 3okp_A 295 VYLEAQACGVPVIAGTSGGAP 315 (394)
T ss_dssp HHHHHHHTTCCEEECSSTTGG
T ss_pred HHHHHHHcCCCEEEeCCCChH
Confidence 9999997776654 4444443
No 10
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=99.95 E-value=1.3e-27 Score=252.92 Aligned_cols=279 Identities=11% Similarity=0.105 Sum_probs=188.2
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeee
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 412 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v 412 (725)
|||++++..++| .||.+.++..|+++|+++||+|+|+++...... .
T Consensus 1 MkIl~i~~~~~~---~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~-------------------------------~ 46 (374)
T 2iw1_A 1 MIVAFCLYKYFP---FGGLQRDFMRIASTVAARGHHVRVYTQSWEGDC-------------------------------P 46 (374)
T ss_dssp -CEEEECSEECT---TCHHHHHHHHHHHHHHHTTCCEEEEESEECSCC-------------------------------C
T ss_pred CeEEEEEeecCC---CcchhhHHHHHHHHHHhCCCeEEEEecCCCCCC-------------------------------C
Confidence 899999998877 499999999999999999999999987632110 1
Q ss_pred CCeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCc
Q 004879 413 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSAR 492 (725)
Q Consensus 413 ~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ip 492 (725)
+|++++.++.. . .. ...+...|.+.+..++++ .+|||||+|++..++. .. ++. ....+|
T Consensus 47 ~~~~v~~~~~~----~-----~~----~~~~~~~~~~~l~~~i~~--~~~Dvv~~~~~~~~~~-~~----~~~-~~~~~~ 105 (374)
T 2iw1_A 47 KAFELIQVPVK----S-----HT----NHGRNAEYYAWVQNHLKE--HPADRVVGFNKMPGLD-VY----FAA-DVCYAE 105 (374)
T ss_dssp TTCEEEECCCC----C-----SS----HHHHHHHHHHHHHHHHHH--SCCSEEEESSCCTTCS-EE----ECC-SCCHHH
T ss_pred CCcEEEEEccC----c-----cc----chhhHHHHHHHHHHHHhc--cCCCEEEEecCCCCce-ee----ecc-ccccce
Confidence 34555555321 0 00 112223344455556654 5899999998654431 01 110 112345
Q ss_pred EEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhh--hccEEEEeCHHHHHHHHhhccCCCcc
Q 004879 493 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIV--FSNIVTTVSPSYAQEVRTSEGGQGLH 570 (725)
Q Consensus 493 iV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~--~AD~VitVS~~~a~ev~~~~~g~GL~ 570 (725)
.+++.|+.... ... . +.....+.+..+. .+|.|+++|+..++.+... +|
T Consensus 106 ~~~~~~~~~~~--~~~----------~------------~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-~~---- 156 (374)
T 2iw1_A 106 KVAQEKGFLYR--LTS----------R------------YRHYAAFERATFEQGKSTKLMMLTDKQIADFQKH-YQ---- 156 (374)
T ss_dssp HHHHHCCHHHH--TSH----------H------------HHHHHHHHHHHHSTTCCCEEEESCHHHHHHHHHH-HC----
T ss_pred eeeecccchhh--hcH----------H------------HHHHHHHHHHHhhccCCcEEEEcCHHHHHHHHHH-hC----
Confidence 55555543210 000 0 0000112233333 6899999999988887652 22
Q ss_pred cccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHH
Q 004879 571 STLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 650 (725)
Q Consensus 571 ~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlL 650 (725)
.+..++.+||||+|.+.|.|.. ....+..+++++|+++ +.++++|+||+.++||++.+
T Consensus 157 ----~~~~~~~vi~ngv~~~~~~~~~---------------~~~~~~~~~~~~~~~~---~~~~i~~~G~~~~~K~~~~l 214 (374)
T 2iw1_A 157 ----TEPERFQILPPGIYPDRKYSEQ---------------IPNSREIYRQKNGIKE---QQNLLLQVGSDFGRKGVDRS 214 (374)
T ss_dssp ----CCGGGEEECCCCCCGGGSGGGS---------------CTTHHHHHHHHTTCCT---TCEEEEEECSCTTTTTHHHH
T ss_pred ----CChhheEEecCCcCHHhcCccc---------------chhHHHHHHHHhCCCC---CCeEEEEeccchhhcCHHHH
Confidence 2457899999999998876632 1124567899999973 67899999999999999999
Q ss_pred HHHHHHhhcC---CcEEEEEcCCCcccccH--------------------HHHHHhcCeEEEcCCcccchHHHHHHcCCC
Q 004879 651 RHAIYRTLEL---GGQFILLGSSPVPHIQV--------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGD 707 (725)
Q Consensus 651 ieA~~~L~~~---~iqLVIvG~Gp~~~le~--------------------~~iyAaADIfVlPS~~EpfGLv~LEAMg~~ 707 (725)
++|+..+.+. +++|+|+|+|+...+++ ..+|+.||++|+||.+|+||++++|||+++
T Consensus 215 i~a~~~l~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~ps~~e~~~~~~~Ea~a~G 294 (374)
T 2iw1_A 215 IEALASLPESLRHNTLLFVVGQDKPRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAG 294 (374)
T ss_dssp HHHHHTSCHHHHHTEEEEEESSSCCHHHHHHHHHHTCGGGEEEESCCSCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHT
T ss_pred HHHHHHhHhccCCceEEEEEcCCCHHHHHHHHHHcCCCCcEEECCCcccHHHHHHhcCEEEeccccCCcccHHHHHHHCC
Confidence 9999988653 89999999987543221 189999999999999999999999999666
Q ss_pred cccc-CCCCCc
Q 004879 708 LTVN-NNCEPW 717 (725)
Q Consensus 708 ~~V~-~~~~G~ 717 (725)
.||+ ++++|.
T Consensus 295 ~Pvi~~~~~~~ 305 (374)
T 2iw1_A 295 LPVLTTAVCGY 305 (374)
T ss_dssp CCEEEETTSTT
T ss_pred CCEEEecCCCc
Confidence 6643 444444
No 11
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=99.95 E-value=3.7e-26 Score=245.44 Aligned_cols=283 Identities=18% Similarity=0.158 Sum_probs=182.9
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeee
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 412 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v 412 (725)
|+--+.... +|. .||.+.++..|+++|+++||+|+|+++..+..... ..
T Consensus 14 ~~~~~~~~~-~p~--~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~----------------------------~~ 62 (394)
T 2jjm_A 14 MKLKIGITC-YPS--VGGSGVVGTELGKQLAERGHEIHFITSGLPFRLNK----------------------------VY 62 (394)
T ss_dssp -CCEEEEEC-CC----CHHHHHHHHHHHHHHHTTCEEEEECSSCC----C----------------------------CC
T ss_pred heeeeehhc-CCC--CCCHHHHHHHHHHHHHhCCCEEEEEeCCCCCcccc----------------------------cC
Confidence 333333333 453 69999999999999999999999998764311000 01
Q ss_pred CCeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCc
Q 004879 413 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSAR 492 (725)
Q Consensus 413 ~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ip 492 (725)
+|+.++.++..... .|. +. ... ..+...+.+++++ .+|||||+|.+.....+..+..... ..++|
T Consensus 63 ~~i~~~~~~~~~~~-~~~----~~----~~~-~~~~~~l~~~l~~--~~~Dvv~~~~~~~~~~~~~~~~~~~---~~~~p 127 (394)
T 2jjm_A 63 PNIYFHEVTVNQYS-VFQ----YP----PYD-LALASKMAEVAQR--ENLDILHVHYAIPHAICAYLAKQMI---GERIK 127 (394)
T ss_dssp TTEEEECCCCC-----CC----SC----CHH-HHHHHHHHHHHHH--HTCSEEEECSSTTHHHHHHHHHHHT---TTCSE
T ss_pred CceEEEeccccccc-ccc----cc----ccc-HHHHHHHHHHHHH--cCCCEEEEcchhHHHHHHHHHHHhh---cCCCC
Confidence 23333322210000 011 00 011 1233444555554 5899999997654332233322221 12699
Q ss_pred EEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccc
Q 004879 493 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHST 572 (725)
Q Consensus 493 iV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~ 572 (725)
+|+|+|+..+.. .+... ....+.+..+..+|.|+++|+.+++.+... ++
T Consensus 128 ~v~~~h~~~~~~---------~~~~~---------------~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~-~~------ 176 (394)
T 2jjm_A 128 IVTTLHGTDITV---------LGSDP---------------SLNNLIRFGIEQSDVVTAVSHSLINETHEL-VK------ 176 (394)
T ss_dssp EEEECCHHHHHT---------TTTCT---------------TTHHHHHHHHHHSSEEEESCHHHHHHHHHH-TC------
T ss_pred EEEEEecCcccc---------cCCCH---------------HHHHHHHHHHhhCCEEEECCHHHHHHHHHh-hC------
Confidence 999999863210 00000 011245667889999999999998887652 21
Q ss_pred cccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHH
Q 004879 573 LNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRH 652 (725)
Q Consensus 573 l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLie 652 (725)
...++.+||||+|...|.|.. +..+++.+|+++ +.++|+|+||+.++||++.+++
T Consensus 177 ---~~~~~~vi~ngv~~~~~~~~~-------------------~~~~~~~~~~~~---~~~~i~~~G~~~~~Kg~~~li~ 231 (394)
T 2jjm_A 177 ---PNKDIQTVYNFIDERVYFKRD-------------------MTQLKKEYGISE---SEKILIHISNFRKVKRVQDVVQ 231 (394)
T ss_dssp ---CSSCEEECCCCCCTTTCCCCC-------------------CHHHHHHTTCC------CEEEEECCCCGGGTHHHHHH
T ss_pred ---CcccEEEecCCccHHhcCCcc-------------------hHHHHHHcCCCC---CCeEEEEeeccccccCHHHHHH
Confidence 246899999999998887641 245778899863 5689999999999999999999
Q ss_pred HHHHhhcC-CcEEEEEcCCCccc-ccH--------------------HHHHHhcCeEEEcCCcccchHHHHHHcCCCccc
Q 004879 653 AIYRTLEL-GGQFILLGSSPVPH-IQV--------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTV 710 (725)
Q Consensus 653 A~~~L~~~-~iqLVIvG~Gp~~~-le~--------------------~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V 710 (725)
|+..+.+. +++|+|+|+|+... +++ ..+|+.||++|+||.+|+||++++|||+++.||
T Consensus 232 a~~~l~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~Pv 311 (394)
T 2jjm_A 232 AFAKIVTEVDAKLLLVGDGPEFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLSEKESFGLVLLEAMACGVPC 311 (394)
T ss_dssp HHHHHHHSSCCEEEEECCCTTHHHHHHHHHTTTCGGGBCCCBSCSCTHHHHHTCSEEEECCSCCSCCHHHHHHHHTTCCE
T ss_pred HHHHHHhhCCCEEEEECCchHHHHHHHHHHHcCCCCeEEEeCchhhHHHHHHhCCEEEeccccCCCchHHHHHHhcCCCE
Confidence 99998763 79999999987531 111 189999999999999999999999999666654
Q ss_pred c-CCCCCc
Q 004879 711 N-NNCEPW 717 (725)
Q Consensus 711 ~-~~~~G~ 717 (725)
+ ++++|+
T Consensus 312 I~~~~~~~ 319 (394)
T 2jjm_A 312 IGTRVGGI 319 (394)
T ss_dssp EEECCTTS
T ss_pred EEecCCCh
Confidence 3 444443
No 12
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=99.93 E-value=2.9e-25 Score=233.94 Aligned_cols=234 Identities=18% Similarity=0.124 Sum_probs=168.7
Q ss_pred CCCCeEEEEcCc--------c---CCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeecc
Q 004879 330 SSGLHVIHIAAE--------M---APVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYF 398 (725)
Q Consensus 330 ~~~MkILhIs~E--------~---~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f 398 (725)
|++|||++++.. + +|. ..||.+.++..|+++|++.||+|+|+++......
T Consensus 1 M~~mkIl~v~~~~~~~~~~~~~p~~p~-~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~------------------ 61 (342)
T 2iuy_A 1 MRPLKVALVNIPLRVPGSDAWISVPPQ-GYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAG------------------ 61 (342)
T ss_dssp --CCEEEEECCCCBCTTSSSBCCSSCS-SSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCC------------------
T ss_pred CCccEEEEEeccccccCcccccccCcc-cCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCC------------------
Confidence 356999999998 4 443 4699999999999999999999999987643211
Q ss_pred CCcceeeeeEeeeeCCeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHH
Q 004879 399 DGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPL 478 (725)
Q Consensus 399 ~g~~~~~rV~~~~v~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl 478 (725)
.++++++ .. + .. ..+..++++ .+|||||+|.+...+.+
T Consensus 62 -------------~~~~~~~--~~--~--------------~~-------~~l~~~l~~--~~~Dvi~~~~~~~~~~~-- 99 (342)
T 2iuy_A 62 -------------RPGLTVV--PA--G--------------EP-------EEIERWLRT--ADVDVVHDHSGGVIGPA-- 99 (342)
T ss_dssp -------------STTEEEC--SC--C--------------SH-------HHHHHHHHH--CCCSEEEECSSSSSCST--
T ss_pred -------------CCcceec--cC--C--------------cH-------HHHHHHHHh--cCCCEEEECCchhhHHH--
Confidence 0122221 10 0 00 023344553 48999999987755421
Q ss_pred HHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHH
Q 004879 479 YWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQ 558 (725)
Q Consensus 479 ~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ 558 (725)
+ ...++| |+|+|+.... . ..+|.++++|+..++
T Consensus 100 -----~--~~~~~p-v~~~h~~~~~-----------------------------~----------~~~d~ii~~S~~~~~ 132 (342)
T 2iuy_A 100 -----G--LPPGTA-FISSHHFTTR-----------------------------P----------VNPVGCTYSSRAQRA 132 (342)
T ss_dssp -----T--CCTTCE-EEEEECSSSB-----------------------------C----------SCCTTEEESCHHHHH
T ss_pred -----H--hhcCCC-EEEecCCCCC-----------------------------c----------ccceEEEEcCHHHHH
Confidence 1 135789 9999986310 0 017999999998876
Q ss_pred HHHhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEe
Q 004879 559 EVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCI 638 (725)
Q Consensus 559 ev~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fV 638 (725)
.+.. ..++.+||||+|.+.|.|... +. ++.++|+|+
T Consensus 133 ~~~~--------------~~~~~vi~ngvd~~~~~~~~~--------------------------~~----~~~~~i~~v 168 (342)
T 2iuy_A 133 HCGG--------------GDDAPVIPIPVDPARYRSAAD--------------------------QV----AKEDFLLFM 168 (342)
T ss_dssp HTTC--------------CTTSCBCCCCBCGGGSCCSTT--------------------------CC----CCCSCEEEE
T ss_pred HHhc--------------CCceEEEcCCCChhhcCcccc--------------------------cC----CCCCEEEEE
Confidence 5432 357889999999988876421 11 245789999
Q ss_pred ecCcCCCCHHHHHHHHHHhhcCCcEEEEEcCCCccc-ccH--------------------HHHHHhcCeEEEcCC-----
Q 004879 639 TRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPVPH-IQV--------------------YPILLSSFSFLRKHI----- 692 (725)
Q Consensus 639 GRL~~qKGvdlLieA~~~L~~~~iqLVIvG~Gp~~~-le~--------------------~~iyAaADIfVlPS~----- 692 (725)
||+.++||++.+++|+..+ +++|+|+|+|+... +++ ..+|+.||++|+||.
T Consensus 169 G~~~~~Kg~~~li~a~~~~---~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~adv~v~ps~~~~~~ 245 (342)
T 2iuy_A 169 GRVSPHKGALEAAAFAHAC---GRRLVLAGPAWEPEYFDEITRRYGSTVEPIGEVGGERRLDLLASAHAVLAMSQAVTGP 245 (342)
T ss_dssp SCCCGGGTHHHHHHHHHHH---TCCEEEESCCCCHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHHCSEEEECCCCCCCT
T ss_pred eccccccCHHHHHHHHHhc---CcEEEEEeCcccHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHhCCEEEECCcccccc
Confidence 9999999999999999987 79999999997532 111 189999999999999
Q ss_pred -----cccchHHHHHHcCCCcccc-CCCCCce
Q 004879 693 -----FNICNLYIKLGQGGDLTVN-NNCEPWL 718 (725)
Q Consensus 693 -----~EpfGLv~LEAMg~~~~V~-~~~~G~l 718 (725)
+|+||++++|||+++.||+ ++++|+-
T Consensus 246 ~~~~~~E~~~~~~~EAma~G~PvI~s~~~~~~ 277 (342)
T 2iuy_A 246 WGGIWCEPGATVVSEAAVSGTPVVGTGNGCLA 277 (342)
T ss_dssp TCSCCCCCCCHHHHHHHHTTCCEEECCTTTHH
T ss_pred cccccccCccHHHHHHHhcCCCEEEcCCCChH
Confidence 8999999999997777754 5555543
No 13
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=99.93 E-value=4.3e-25 Score=238.84 Aligned_cols=272 Identities=16% Similarity=0.138 Sum_probs=173.0
Q ss_pred CCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEe
Q 004879 330 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWV 409 (725)
Q Consensus 330 ~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~ 409 (725)
+++|||+++++. + ..||.+.++..|+++|.+.||+|+|++.......... ...+. .
T Consensus 38 ~~~mkIl~v~~~--~--~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~---~~~~~----~------------- 93 (416)
T 2x6q_A 38 LKGRSFVHVNST--S--FGGGVAEILHSLVPLLRSIGIEARWFVIEGPTEFFNV---TKTFH----N------------- 93 (416)
T ss_dssp TTTCEEEEEESC--S--SSSTHHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHH---HHHHH----H-------------
T ss_pred hhccEEEEEeCC--C--CCCCHHHHHHHHHHHHHhCCCeEEEEEccCCcchhhh---hcccc----e-------------
Confidence 457999999985 2 3799999999999999999999999986532110000 00000 0
Q ss_pred eeeCCeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCC
Q 004879 410 STIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLN 489 (725)
Q Consensus 410 ~~v~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~ 489 (725)
...|.+.+. + .. .....+..+.+....+++ ..+|||||+|++....++ . ++. .
T Consensus 94 -~~~~~~~~~---------~------~~-~~~~~~~~~~~~~~~~l~--~~~~Dvv~~~~~~~~~~~----~-~~~---~ 146 (416)
T 2x6q_A 94 -ALQGNESLK---------L------TE-EMKELYLNVNRENSKFID--LSSFDYVLVHDPQPAALI----E-FYE---K 146 (416)
T ss_dssp -HHTTCCSCC---------C------CH-HHHHHHHHHHHHHHHSSC--GGGSSEEEEESSTTGGGG----G-GSC---C
T ss_pred -eeccccccc---------c------cH-HHHHHHHHHHHHHHHHHh--hcCCCEEEEeccchhhHH----H-HHH---h
Confidence 011111000 0 00 001111112222222222 348999999987654431 1 111 2
Q ss_pred CCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEE-EeCHHHHHHHHhhccCCC
Q 004879 490 SARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVT-TVSPSYAQEVRTSEGGQG 568 (725)
Q Consensus 490 ~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~Vi-tVS~~~a~ev~~~~~g~G 568 (725)
++|+|+|+|+.... +... ...+++..+..+|.++ ++|+...+ .+
T Consensus 147 ~~p~v~~~h~~~~~---~~~~------------------------~~~~~~~~~~~~~~~i~~~s~~~~~-----~~--- 191 (416)
T 2x6q_A 147 KSPWLWRCHIDLSS---PNRE------------------------FWEFLRRFVEKYDRYIFHLPEYVQP-----EL--- 191 (416)
T ss_dssp CSCEEEECCSCCSS---CCHH------------------------HHHHHHHHHTTSSEEEESSGGGSCT-----TS---
T ss_pred cCCEEEEEccccCC---ccHH------------------------HHHHHHHHHHhCCEEEEechHHHHh-----hC---
Confidence 38999999986321 0000 0112334455677766 55543221 11
Q ss_pred cccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHH
Q 004879 569 LHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVH 648 (725)
Q Consensus 569 L~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvd 648 (725)
...++.+||||+|...|.+... ....+..+++.+|+++ +.++|+|+||+.++||++
T Consensus 192 -------~~~~~~vi~ngvd~~~~~~~~~--------------~~~~~~~~r~~~~~~~---~~~~i~~vGrl~~~Kg~~ 247 (416)
T 2x6q_A 192 -------DRNKAVIMPPSIDPLSEKNVEL--------------KQTEILRILERFDVDP---EKPIITQVSRFDPWKGIF 247 (416)
T ss_dssp -------CTTTEEECCCCBCTTSTTTSCC--------------CHHHHHHHHHHTTCCT---TSCEEEEECCCCTTSCHH
T ss_pred -------CccceEEeCCCCChhhhccccc--------------ChhhHHHHHHHhCCCC---CCcEEEEEeccccccCHH
Confidence 2368999999999876654210 1224567899999973 678999999999999999
Q ss_pred HHHHHHHHhhc--CCcEEEEEcCCCcc------ccc-----------------------HH--HHHHhcCeEEEcCCccc
Q 004879 649 LIRHAIYRTLE--LGGQFILLGSSPVP------HIQ-----------------------VY--PILLSSFSFLRKHIFNI 695 (725)
Q Consensus 649 lLieA~~~L~~--~~iqLVIvG~Gp~~------~le-----------------------~~--~iyAaADIfVlPS~~Ep 695 (725)
.+++|+..+.+ .+++|+|+|+|+.. .++ .+ .+|++||++|+||.+|+
T Consensus 248 ~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~~E~ 327 (416)
T 2x6q_A 248 DVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSIREG 327 (416)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHHCSEEEECCSSCS
T ss_pred HHHHHHHHHHHhCCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHhCCEEEECCCcCC
Confidence 99999999875 48999999999631 010 01 79999999999999999
Q ss_pred chHHHHHHcCCCcccc
Q 004879 696 CNLYIKLGQGGDLTVN 711 (725)
Q Consensus 696 fGLv~LEAMg~~~~V~ 711 (725)
||++++|||+++.||+
T Consensus 328 ~~~~~lEAma~G~PvI 343 (416)
T 2x6q_A 328 FGLTVTEAMWKGKPVI 343 (416)
T ss_dssp SCHHHHHHHHTTCCEE
T ss_pred CccHHHHHHHcCCCEE
Confidence 9999999997776654
No 14
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=99.92 E-value=1.4e-24 Score=253.10 Aligned_cols=256 Identities=15% Similarity=0.096 Sum_probs=189.4
Q ss_pred HHHHHHHHHHH-HHHc-----CC----CceEEEECCCchhhHHHHHHHhhcc-CC--------CCCCcEEEEeeCCcccC
Q 004879 444 FSFFSRAALEL-LLQA-----GK----QPDIIHCHDWQTAFVAPLYWDLYVP-KG--------LNSARVCFTCHNFEYQG 504 (725)
Q Consensus 444 ~~~Fsravlel-L~~~-----~~----kPDIIH~Hdw~sa~vapl~~~~ya~-~g--------l~~ipiV~TiHn~~~qg 504 (725)
-.+|+.++++. ++.. .. +||||||||||++++++-+...... .+ ..+..+|+|+|+.-++|
T Consensus 262 e~ff~~a~lq~ilr~~~~~~~~l~~l~~p~viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vyT~HTl~~eg 341 (796)
T 2c4m_A 262 QYFFTSASLQAMIQDHLAHHKDLSNFAEFHSVQLNDTHPVLAIPELMRLLMDEHDMGWEESWAIVSKTFAYTNHTVLTEA 341 (796)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCSTTHHHHEEEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHHHHEEEECCCSSSTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCChhhcCCCeEEEeCCChHHhHHHHHHHHHhhhcCCCHHHHHHHhhccEEEEecCchHHH
Confidence 45789999886 4422 12 6999999999999986634332110 00 13578999999999888
Q ss_pred C--CChhhhhh-c--------CCcccccCC----cc---cccc--cccccchhhhhhhhhhccEEEEeCHHHHHHHHhhc
Q 004879 505 T--APAKELAS-C--------GLDVQQLNR----PD---RMQD--NSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSE 564 (725)
Q Consensus 505 ~--~p~~~l~~-~--------Gl~~~~l~~----~~---~l~d--~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~ 564 (725)
. +|.+.+.. + +++..++.. |+ ++.. -...+.+++.+.|+..|+.|++||+.+++.+.++.
T Consensus 342 le~wp~~l~~~~lpr~~~ii~~I~~~~~~~~~~~~~~~~~~~~~~i~~~~~vnMa~lai~~S~~VNgVS~lHae~ik~~~ 421 (796)
T 2c4m_A 342 LEQWDEQIFQQLFWRVWEIIAEIDRRFRLERAADGLDEETINRMAPIQHGTVHMAWIACYAAYSINGVAALHTEIIKAET 421 (796)
T ss_dssp SCEEEHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHCSEETTEEEHHHHHHHHCSEEEESSHHHHHHHHHTT
T ss_pred hhhCCHHHHHHHhHHHHHHHcCcCHHHHHHHHhcCCcHhhhhcccceeCCcccHHHHHHHhcCceeeccHHHHHHhhhhh
Confidence 6 55443321 0 111111000 00 0000 01345799999999999999999999999998765
Q ss_pred cCCCcccccccCCCcEEEEeCCccCCCC----CCCCcchhhhccC-----------------ccc-------ccchhhhH
Q 004879 565 GGQGLHSTLNFHSKKFVGILNGIDTDAW----NPATDTFLKVQYN-----------------AND-------LQGKAENK 616 (725)
Q Consensus 565 ~g~GL~~~l~~~~~Kv~vIpNGID~~~f----~P~~d~~l~~~ys-----------------~~d-------~~gK~~~K 616 (725)
++ .++...+.++..|.||||...| +|..++.++.+|+ ++| +++|..+|
T Consensus 422 f~----~~~~~~p~kf~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~~w~~d~~~l~~l~~~~~d~~~~~~l~~~K~~nK 497 (796)
T 2c4m_A 422 LA----DWYALWPEKFNNKTNGVTPRRWLRMINPGLSDLLTRLSGSDDWVTDLDELKKLRSYADDKSVLEELRAIKAANK 497 (796)
T ss_dssp TH----HHHHHCGGGEEECCCCBCTCCCCCTTCHHHHHHHHHHHSSSGGGGCGGGGGGGGGGGGCHHHHHHHHHHHHHHH
T ss_pred hh----hHHHcCccccccccCCcchHHhhcccCHhHHHHHHHhcCchhhhhChHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 53 2333457899999999999999 8998888888888 666 47899999
Q ss_pred HH----HHHHcCCCCCCCCCCEEEEeecCcCCCCHHH-HHHHHHHhhc---------CCcEEEEEcCCCcccc-------
Q 004879 617 ES----IRKHLGLSSADARKPLVGCITRLVPQKGVHL-IRHAIYRTLE---------LGGQFILLGSSPVPHI------- 675 (725)
Q Consensus 617 ~a----LRk~lGL~~~d~~~plV~fVGRL~~qKGvdl-LieA~~~L~~---------~~iqLVIvG~Gp~~~l------- 675 (725)
.+ +++++|++ .+++.+++++|.|++.+||.++ +++++.++.+ .+++||++|.|...+.
T Consensus 498 ~~L~~~l~~~~Gl~-vdpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk 576 (796)
T 2c4m_A 498 QDFAEWILERQGIE-IDPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVIFGAKAAPGYVRAKAIIK 576 (796)
T ss_dssp HHHHHHHHHHHCCC-CCTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCEEEEEECCCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CCCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCCCCeEEEEEecCCHhHHHHHHHHH
Confidence 98 49999997 4778999999999999999999 8999888763 3689999998763321
Q ss_pred -----cH-------------------------HHHHHhcCeEEEcCC--cccchHHHHHHc
Q 004879 676 -----QV-------------------------YPILLSSFSFLRKHI--FNICNLYIKLGQ 704 (725)
Q Consensus 676 -----e~-------------------------~~iyAaADIfVlPS~--~EpfGLv~LEAM 704 (725)
.+ +.++++||++.+||+ +||||++.|-||
T Consensus 577 ~i~~va~~in~dp~~~~~lKVvFl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam 637 (796)
T 2c4m_A 577 LINSIADLVNNDPEVSPLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEASGTSNMKFM 637 (796)
T ss_dssp HHHHHHHHHHTCTTTTTTEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCHHHHHHH
T ss_pred HHHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHH
Confidence 00 189999999999999 999999999999
No 15
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=99.92 E-value=2.4e-24 Score=251.28 Aligned_cols=252 Identities=15% Similarity=0.120 Sum_probs=189.6
Q ss_pred HHHHHHHHHHH-HHHc-----CC----CceEEEECCCchhhHHHHHHHhhcc-CC--------CCCCcEEEEeeCCcccC
Q 004879 444 FSFFSRAALEL-LLQA-----GK----QPDIIHCHDWQTAFVAPLYWDLYVP-KG--------LNSARVCFTCHNFEYQG 504 (725)
Q Consensus 444 ~~~Fsravlel-L~~~-----~~----kPDIIH~Hdw~sa~vapl~~~~ya~-~g--------l~~ipiV~TiHn~~~qg 504 (725)
-.+|+.++++. ++.. .. +||||||||||++++++-+...... .+ ..+..+|+|+|+.-++|
T Consensus 272 e~ff~~a~lq~ilr~~~~~~~~~~~l~~p~viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vyT~HTl~~eg 351 (796)
T 1l5w_A 272 QYFQCACSVADILRRHHLAGRKLHELADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEA 351 (796)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCGGGHHHHEEEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHTTTEEEECCCCSGGG
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhhcCCccEEEecCCccHhHHHHHHHHHhhhcCCCHHHHHHHhhccEEEEecCCcHhh
Confidence 45789999886 4422 12 6999999999999986634332110 00 13688999999998888
Q ss_pred C--CChhhhhh-c--------CCcc--------------cccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHH
Q 004879 505 T--APAKELAS-C--------GLDV--------------QQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE 559 (725)
Q Consensus 505 ~--~p~~~l~~-~--------Gl~~--------------~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~e 559 (725)
. +|.+.+.. + +++. ..+... .+. ..+.+++.+.|+..|+.|++||+.+++.
T Consensus 352 le~wp~~l~~~~lpr~~~ii~~I~~~f~~~~~~~~~~~~~~~~~~-~i~---~~~~vnMa~lai~~S~~VNgVS~lH~e~ 427 (796)
T 1l5w_A 352 LERWDVKLVKGLLPRHMQIINEINTRFKTLVEKTWPGDEKVWAKL-AVV---HDKQVHMANLCVVGGFAVNGVAALHSDL 427 (796)
T ss_dssp SCEEEHHHHHHHCHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHH-CSE---ETTEEEHHHHHHHHSSEEEESSHHHHHH
T ss_pred hhcCCHHHHHHHhHHHHHHHhccCHHHHHHHHHhcCCcHHHHhhh-hcc---cCCcccHHHHHHHhcCccccccHHHHHH
Confidence 5 45443321 0 0110 111000 111 3457999999999999999999999999
Q ss_pred HHhhccCCCcccccccCCCcEEEEeCCccCCCC----CCCCcchhhhccC----------------ccc-------ccch
Q 004879 560 VRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAW----NPATDTFLKVQYN----------------AND-------LQGK 612 (725)
Q Consensus 560 v~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f----~P~~d~~l~~~ys----------------~~d-------~~gK 612 (725)
+.++.++ .+....+.++..|.||||...| +|..++.++.+|+ ++| +++|
T Consensus 428 ik~~~f~----~~~~~~p~k~~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~w~~d~~~l~~l~~~~~d~~~~~~l~~~K 503 (796)
T 1l5w_A 428 VVKDLFP----EYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQKEWANDLDQLINLEKFADDAKFRQQYREIK 503 (796)
T ss_dssp HHHTTSH----HHHHHCGGGEEECCCCBCHHHHTTTTCHHHHHHHHHHCSSCCTTCGGGGGGGGGGGGCHHHHHHHHHHH
T ss_pred HHhHHhh----HHHHhCccccCCCcCCCcHHHhhcccCHhHHHHHHHhcCcccccCHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9876553 2334456799999999999999 8998888888887 665 4688
Q ss_pred hhhHHH----HHHHcCCCCCCCCCCEEEEeecCcCCCCHHH-HHHHHHHhhc---------CCcEEEEEcCCCcccc---
Q 004879 613 AENKES----IRKHLGLSSADARKPLVGCITRLVPQKGVHL-IRHAIYRTLE---------LGGQFILLGSSPVPHI--- 675 (725)
Q Consensus 613 ~~~K~a----LRk~lGL~~~d~~~plV~fVGRL~~qKGvdl-LieA~~~L~~---------~~iqLVIvG~Gp~~~l--- 675 (725)
..+|.. +++++|++ .+++.+++++|.|++.+||.++ +++++.++.+ .+++||++|.|...+.
T Consensus 504 ~~nK~~L~~~l~~~~Gl~-vdpd~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK 582 (796)
T 1l5w_A 504 QANKVRLAEFVKVRTGIE-INPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAK 582 (796)
T ss_dssp HHHHHHHHHHHHHHHCCC-CCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEECCCCTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCCC-cCCCcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCCeEEEEEecCChhHHHHH
Confidence 889998 48999997 4778999999999999999999 8999988765 4789999998763321
Q ss_pred ---------cH-------------------------HHHHHhcCeEEEcCC--cccchHHHHHHc
Q 004879 676 ---------QV-------------------------YPILLSSFSFLRKHI--FNICNLYIKLGQ 704 (725)
Q Consensus 676 ---------e~-------------------------~~iyAaADIfVlPS~--~EpfGLv~LEAM 704 (725)
.+ +.++++||++.+||+ +||||++.|-||
T Consensus 583 ~iIk~i~~va~~in~Dp~~~~~lKVvfl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam 647 (796)
T 1l5w_A 583 NIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLA 647 (796)
T ss_dssp HHHHHHHHHHHHHHTCTTTGGGEEEEECSSCCHHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHH
Confidence 00 189999999999999 999999999999
No 16
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=99.92 E-value=1.5e-24 Score=231.96 Aligned_cols=270 Identities=15% Similarity=0.098 Sum_probs=175.7
Q ss_pred CCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEe
Q 004879 330 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWV 409 (725)
Q Consensus 330 ~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~ 409 (725)
.++|||+++++.++|. .||.+.++..++++|.+.||+|+|+++........ ...
T Consensus 18 ~~~MkIl~i~~~~~~~--~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~------~~~------------------ 71 (406)
T 2gek_A 18 GSHMRIGMVCPYSFDV--PGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLP------DYV------------------ 71 (406)
T ss_dssp ---CEEEEECSSCTTS--CCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSCCC------TTE------------------
T ss_pred CCcceEEEEeccCCCC--CCcHHHHHHHHHHHHHHCCCeEEEEecCCccccCC------ccc------------------
Confidence 4579999999765553 69999999999999999999999999875432100 000
Q ss_pred eeeCCeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCC
Q 004879 410 STIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLN 489 (725)
Q Consensus 410 ~~v~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~ 489 (725)
...| .++.++... .+. .+.. . ..+.+.+..++++ .+|||||+|.+.....+ .+.... .
T Consensus 72 -~~~~-~~~~~~~~~---~~~---~~~~--~----~~~~~~l~~~l~~--~~~Dii~~~~~~~~~~~-~~~~~~-----~ 129 (406)
T 2gek_A 72 -VSGG-KAVPIPYNG---SVA---RLRF--G----PATHRKVKKWIAE--GDFDVLHIHEPNAPSLS-MLALQA-----A 129 (406)
T ss_dssp -EECC-CCC------------------C--C----HHHHHHHHHHHHH--HCCSEEEEECCCSSSHH-HHHHHH-----E
T ss_pred -ccCC-cEEeccccC---Ccc---cccc--c----HHHHHHHHHHHHh--cCCCEEEECCccchHHH-HHHHHh-----c
Confidence 0011 111111000 000 0000 0 0122344455554 48999999987765542 222221 3
Q ss_pred CCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCc
Q 004879 490 SARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGL 569 (725)
Q Consensus 490 ~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL 569 (725)
++|+|+++|+.... ...... ...+++..+..+|.++++|+..++.+.. .+
T Consensus 130 ~~~~i~~~h~~~~~----~~~~~~---------------------~~~~~~~~~~~~d~ii~~s~~~~~~~~~-~~---- 179 (406)
T 2gek_A 130 EGPIVATFHTSTTK----SLTLSV---------------------FQGILRPYHEKIIGRIAVSDLARRWQME-AL---- 179 (406)
T ss_dssp ESSEEEEECCCCCS----HHHHHH---------------------HHSTTHHHHTTCSEEEESSHHHHHHHHH-HH----
T ss_pred CCCEEEEEcCcchh----hhhHHH---------------------HHHHHHHHHhhCCEEEECCHHHHHHHHH-hc----
Confidence 68999999985311 000000 0112235678899999999988887765 22
Q ss_pred ccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecC-cCCCCHH
Q 004879 570 HSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRL-VPQKGVH 648 (725)
Q Consensus 570 ~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL-~~qKGvd 648 (725)
...++ +||||+|...|.|... ..+++ .+.+.|+|+||+ .+.||++
T Consensus 180 ------~~~~~-vi~~~v~~~~~~~~~~------------------------~~~~~---~~~~~i~~~G~~~~~~Kg~~ 225 (406)
T 2gek_A 180 ------GSDAV-EIPNGVDVASFADAPL------------------------LDGYP---REGRTVLFLGRYDEPRKGMA 225 (406)
T ss_dssp ------SSCEE-ECCCCBCHHHHHTCCC------------------------CTTCS---CSSCEEEEESCTTSGGGCHH
T ss_pred ------CCCcE-EecCCCChhhcCCCch------------------------hhhcc---CCCeEEEEEeeeCccccCHH
Confidence 23578 9999999877655321 01122 245799999999 9999999
Q ss_pred HHHHHHHHhhc--CCcEEEEEcCCCccccc------------------H--HHHHHhcCeEEEcCC-cccchHHHHHHcC
Q 004879 649 LIRHAIYRTLE--LGGQFILLGSSPVPHIQ------------------V--YPILLSSFSFLRKHI-FNICNLYIKLGQG 705 (725)
Q Consensus 649 lLieA~~~L~~--~~iqLVIvG~Gp~~~le------------------~--~~iyAaADIfVlPS~-~EpfGLv~LEAMg 705 (725)
.+++|+..+.+ .+++|+|+|+|+...++ . ..+|+.||++|+||. +|+||++++|||+
T Consensus 226 ~li~a~~~l~~~~~~~~l~i~G~~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~e~~~~~~~Ea~a 305 (406)
T 2gek_A 226 VLLAALPKLVARFPDVEILIVGRGDEDELREQAGDLAGHLRFLGQVDDATKASAMRSADVYCAPHLGGESFGIVLVEAMA 305 (406)
T ss_dssp HHHHHHHHHHTTSTTCEEEEESCSCHHHHHHHTGGGGGGEEECCSCCHHHHHHHHHHSSEEEECCCSCCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEEEEcCCcHHHHHHHHHhccCcEEEEecCCHHHHHHHHHHCCEEEecCCCCCCCchHHHHHHH
Confidence 99999999875 48999999999862111 1 289999999999996 9999999999997
Q ss_pred CCcccc
Q 004879 706 GDLTVN 711 (725)
Q Consensus 706 ~~~~V~ 711 (725)
++.||+
T Consensus 306 ~G~PvI 311 (406)
T 2gek_A 306 AGTAVV 311 (406)
T ss_dssp HTCEEE
T ss_pred cCCCEE
Confidence 666644
No 17
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=99.91 E-value=2.4e-23 Score=224.48 Aligned_cols=261 Identities=13% Similarity=0.058 Sum_probs=172.0
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeee
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 412 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v 412 (725)
|||+++++.+ |. .||++.++..|+++|++. |+|+|+++...+... ..... .+....
T Consensus 1 MkI~~v~~~~-p~--~gG~~~~~~~l~~~L~~~-~~V~v~~~~~~g~~~--~~~~~------------------~~~~~~ 56 (413)
T 3oy2_A 1 MKLIIVGAHS-SV--PSGYGRVMRAIVPRISKA-HEVIVFGIHAFGRSV--HANIE------------------EFDAQT 56 (413)
T ss_dssp CEEEEEEECT-TC--CSHHHHHHHHHHHHHTTT-SEEEEEEESCCSCCS--CSSSE------------------EEEHHH
T ss_pred CeEEEecCCC-CC--CCCHHHHHHHHHHHHHhc-CCeEEEeecCCCccc--ccccc------------------cCCccc
Confidence 8999999754 54 699999999999999999 999999876432100 00000 000000
Q ss_pred CCeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCc
Q 004879 413 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSAR 492 (725)
Q Consensus 413 ~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ip 492 (725)
.. .+....| ..+ +...+...+++ .+|||||+|.|...+. +.+... .. -....+
T Consensus 57 --~~--~~~~~~~-------~~~-----------~~~~l~~~l~~--~~~Div~~~~~~~~~~-~~~~~~-~~-~~~~~~ 109 (413)
T 3oy2_A 57 --AE--HVRGLNE-------QGF-----------YYSGLSEFIDV--HKPDIVMIYNDPIVIG-NYLLAM-GK-CSHRTK 109 (413)
T ss_dssp --HH--HHTTCCS-------TTC-----------CHHHHHHHHHH--HCCSEEEEEECHHHHH-HHHHHG-GG-CCSCCE
T ss_pred --cc--ccccccc-------ccc-----------hHHHHHHHHHh--cCCCEEEEcchHHHHH-HHHHHh-cc-CCCCCc
Confidence 00 0110000 000 11222334443 4899999997765543 333322 11 011356
Q ss_pred EEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhcc--EEEEeCHHHHHHHHhhccCCCcc
Q 004879 493 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSN--IVTTVSPSYAQEVRTSEGGQGLH 570 (725)
Q Consensus 493 iV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD--~VitVS~~~a~ev~~~~~g~GL~ 570 (725)
++.++|+.... . . ...+..+..+| .|+++|+..++.+.. ++
T Consensus 110 ~~~~~~~~~~~--~--------------------------~---~~~~~~~~~~~~~~ii~~S~~~~~~~~~--~~---- 152 (413)
T 3oy2_A 110 IVLYVDLVSKN--I--------------------------R---ENLWWIFSHPKVVGVMAMSKCWISDICN--YG---- 152 (413)
T ss_dssp EEEEECCCSBS--C--------------------------C---GGGGGGGGCTTEEEEEESSTHHHHHHHH--TT----
T ss_pred eeeeccccchh--h--------------------------H---HHHHHHHhccCCceEEEcCHHHHHHHHH--cC----
Confidence 67777754210 0 0 00245567777 999999999888775 22
Q ss_pred cccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHH
Q 004879 571 STLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 650 (725)
Q Consensus 571 ~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlL 650 (725)
.+.++.+||||+|...|. ..++.+|+++ +.+.++|+|+||+.++||++.+
T Consensus 153 -----~~~~~~vi~ngvd~~~~~------------------------~~~~~~~~~~-~~~~~~il~vGr~~~~Kg~~~l 202 (413)
T 3oy2_A 153 -----CKVPINIVSHFVDTKTIY------------------------DARKLVGLSE-YNDDVLFLNMNRNTARKRLDIY 202 (413)
T ss_dssp -----CCSCEEECCCCCCCCCCT------------------------THHHHTTCGG-GTTSEEEECCSCSSGGGTHHHH
T ss_pred -----CCCceEEeCCCCCHHHHH------------------------HHHHhcCCCc-ccCceEEEEcCCCchhcCcHHH
Confidence 146899999999998762 1456777762 2257899999999999999999
Q ss_pred HHHHHHhhc--CCcEEEEEcCCCcc-------cc---------c-----------------H-H--HHHHhcCeEEEcCC
Q 004879 651 RHAIYRTLE--LGGQFILLGSSPVP-------HI---------Q-----------------V-Y--PILLSSFSFLRKHI 692 (725)
Q Consensus 651 ieA~~~L~~--~~iqLVIvG~Gp~~-------~l---------e-----------------~-~--~iyAaADIfVlPS~ 692 (725)
++|+..+.+ .+++|+|+|+|+.. .+ . . + .+|++||++|+||.
T Consensus 203 i~a~~~l~~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~adv~v~pS~ 282 (413)
T 3oy2_A 203 VLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNACDVIVNCSS 282 (413)
T ss_dssp HHHHHHHHHHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHHCSEEEECCS
T ss_pred HHHHHHHHHhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHhCCEEEeCCC
Confidence 999999865 47999999998742 01 1 0 1 79999999999999
Q ss_pred cccchHHHHHHcCCCcccc
Q 004879 693 FNICNLYIKLGQGGDLTVN 711 (725)
Q Consensus 693 ~EpfGLv~LEAMg~~~~V~ 711 (725)
+|+||++++|||+++.||+
T Consensus 283 ~E~~~~~~lEAma~G~PvI 301 (413)
T 3oy2_A 283 GEGFGLCSAEGAVLGKPLI 301 (413)
T ss_dssp CCSSCHHHHHHHTTTCCEE
T ss_pred cCCCCcHHHHHHHcCCCEE
Confidence 9999999999997777754
No 18
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=99.88 E-value=5.2e-22 Score=218.67 Aligned_cols=278 Identities=14% Similarity=0.082 Sum_probs=170.6
Q ss_pred CCCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeE
Q 004879 329 ISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVW 408 (725)
Q Consensus 329 ~~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~ 408 (725)
+.++|||+++++.|.|-...||.. .+.+|+++|+++||+|+|+++.+.. ....+..+.... .. ++..
T Consensus 43 ~~~~mrI~~v~~~~~p~~~~GG~~-~v~~la~~L~~~GheV~Vvt~~~~~-~~~~~~~~~~~~--~~-~~~~-------- 109 (413)
T 2x0d_A 43 SIKGKRLNLLVPSINQEHMFGGIS-TALKLFEQFDNKKFKKRIILTDATP-NPKDLQSFKSFK--YV-MPEE-------- 109 (413)
T ss_dssp CCCSCEEEEEESCCCGGGCSHHHH-HHHHHHTTSCTTTCEEEEEESSCCC-CHHHHGGGTTSE--EC-CTTC--------
T ss_pred CCCCceEEEEeCCCCccccccHHH-HHHHHHHHHHHcCCceEEEEecCCC-ChHHHHhhhccc--ee-eccC--------
Confidence 456799999999999853357774 6899999999999999999987532 111010110000 00 0000
Q ss_pred eeeeCCeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHH----Hhhc
Q 004879 409 VSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYW----DLYV 484 (725)
Q Consensus 409 ~~~v~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~----~~ya 484 (725)
..++....+. |.. . +. + .+. ..+|||||+|.|.++.++.... ..+
T Consensus 110 ---~~~~~~~i~~-------~~~-~-~~------~----------~~~--~~~~Dvv~a~~~~~~~~~~~~~~~~~~~~- 158 (413)
T 2x0d_A 110 ---DKDFALQIVP-------FND-R-YN------R----------TIP--VAKHDIFIATAWWTAYAAQRIVSWQSDTY- 158 (413)
T ss_dssp ---CCCCSEEEEE-------CSC-C-TT------C----------CEE--ECTTEEEEECSHHHHHHHHHHHHHHHHHH-
T ss_pred ---Cccccceeee-------ccc-c-cc------c----------ccc--CCCCCEEEEehHHHHHHHHHhhhhhhhhc-
Confidence 0000000000 000 0 00 0 000 1379999999998776543321 112
Q ss_pred cCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhcc--EEEEeCHHHHHHHHh
Q 004879 485 PKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSN--IVTTVSPSYAQEVRT 562 (725)
Q Consensus 485 ~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD--~VitVS~~~a~ev~~ 562 (725)
+..+.|.++.+|++... ..+. . ....+.+..+..++ .++++|+..++.+..
T Consensus 159 --~~~~~~~~~~v~~~~~~-~~~~--------~----------------~~~~~~~~~~~~~~~~~vi~~S~~~~~~l~~ 211 (413)
T 2x0d_A 159 --GIPPNKILYIIQDFEPG-FYQW--------S----------------SQYVLAESTYKYRGPQIAVFNSELLKQYFNN 211 (413)
T ss_dssp --TCCCCCEEEEECSCGGG-GSCS--------S----------------HHHHHHHHTTSCCSCEEEEEESHHHHHHHHH
T ss_pred --ccccCcEEEEEeechhh-cCcc--------C----------------hHHHHHHHHhccCCceEEEEcCHHHHHHHHH
Confidence 12356888888876310 0000 0 00012233444444 589999999988875
Q ss_pred hccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecC-
Q 004879 563 SEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRL- 641 (725)
Q Consensus 563 ~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL- 641 (725)
..+ ...++.++|||+|.+.|.|.. .+. ++.+.++|+||+
T Consensus 212 ~g~----------~~~~~~~i~~g~d~~~~~~~~--------------------------~~~----~~~~~il~~gr~~ 251 (413)
T 2x0d_A 212 KGY----------NFTDEYFFQPKINTTLKNYIN--------------------------DKR----QKEKIILVYGRPS 251 (413)
T ss_dssp HTC----------CCSEEEEECCCCCHHHHTTTT--------------------------SCC----CCCSEEEEEECTT
T ss_pred cCC----------CCCceEEeCCCcCchhhcccc--------------------------ccc----CCCCEEEEEecCc
Confidence 311 124688999999976554310 011 245688999997
Q ss_pred cCCCCHHHHHHHHHHhhcC-----CcEEEEEcCCCccc-cc-------------H--HHHHHhcCeEEEcCCcccchHHH
Q 004879 642 VPQKGVHLIRHAIYRTLEL-----GGQFILLGSSPVPH-IQ-------------V--YPILLSSFSFLRKHIFNICNLYI 700 (725)
Q Consensus 642 ~~qKGvdlLieA~~~L~~~-----~iqLVIvG~Gp~~~-le-------------~--~~iyAaADIfVlPS~~EpfGLv~ 700 (725)
.+.||++++++|+..+.+. +++|+++|+|+... +. . ..+|++||+||+||.+|+||+++
T Consensus 252 ~~~Kg~~~li~A~~~l~~~~~~~~~~~l~ivG~~~~~~~l~~~~~v~f~G~~~~~~l~~~~~~adv~v~pS~~E~~g~~~ 331 (413)
T 2x0d_A 252 VKRNAFTLIVEALKIFVQKYDRSNEWKIISVGEKHKDIALGKGIHLNSLGKLTLEDYADLLKRSSIGISLMISPHPSYPP 331 (413)
T ss_dssp CGGGCHHHHHHHHHHHHHHCTTGGGCEEEEEESCCCCEEEETTEEEEEEESCCHHHHHHHHHHCCEEECCCSSSSCCSHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCCCceEEEEEcCCchhhhcCCcCcEEEcCCCCHHHHHHHHHhCCEEEEecCCCCCCcHH
Confidence 6899999999999988642 38999999987541 10 1 18999999999999999999999
Q ss_pred HHHcCCCccccCCCCCc
Q 004879 701 KLGQGGDLTVNNNCEPW 717 (725)
Q Consensus 701 LEAMg~~~~V~~~~~G~ 717 (725)
+|||+++.||+...+|.
T Consensus 332 lEAmA~G~PVV~~~~g~ 348 (413)
T 2x0d_A 332 LEMAHFGLRVITNKYEN 348 (413)
T ss_dssp HHHHHTTCEEEEECBTT
T ss_pred HHHHhCCCcEEEeCCCc
Confidence 99997777765444443
No 19
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=99.87 E-value=1.2e-22 Score=237.64 Aligned_cols=238 Identities=16% Similarity=0.130 Sum_probs=175.2
Q ss_pred CceEEEECCCchhhHHHHHHHhhcc-CCC--------CCCcEEEEeeCCcccCC--CChhhhhh-c--------CCcc--
Q 004879 461 QPDIIHCHDWQTAFVAPLYWDLYVP-KGL--------NSARVCFTCHNFEYQGT--APAKELAS-C--------GLDV-- 518 (725)
Q Consensus 461 kPDIIH~Hdw~sa~vapl~~~~ya~-~gl--------~~ipiV~TiHn~~~qg~--~p~~~l~~-~--------Gl~~-- 518 (725)
+||||||||||++++++-+...... .++ .+..+|+|+|+.-++|. +|.+.+.. + +++.
T Consensus 320 ~p~viHlNDtHpal~i~ElmR~l~d~~~l~~d~A~~i~~~~~vfT~HTl~~eglE~wp~~l~~~lLPr~~~ii~~in~~f 399 (824)
T 2gj4_A 320 DKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPEALERWPVHLLETLLPRHLQIIYEINQRF 399 (824)
T ss_dssp HHEEEEEESSTTTTHHHHHHHHHHHTSCCCHHHHHHHHHHHEEEECCCCCGGGSCEEEHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCcEEEccCCchHhHHHHHHHHHHHhcCCCHHHHHHHhcCcEEEEeCCChHHHhhhchHHHHHHhCchHHHHHHHHHHHH
Confidence 4889999999999986634432110 011 23459999999998887 66554322 1 0000
Q ss_pred ------------cccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCC
Q 004879 519 ------------QQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNG 586 (725)
Q Consensus 519 ------------~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNG 586 (725)
..+.++..+.+ ...+.+++.+.|+..|+.|++||+.|++.+.++.++ .++...+.++..|.||
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~i~~-~~~~~vnMa~lai~~S~~VNgVS~lH~e~ik~~~f~----~~~~~~p~k~~~iTNG 474 (824)
T 2gj4_A 400 LNRVAAAFPGDVDRLRRMSLVEE-GAVKRINMAHLCIAGSHAVNGVARIHSEILKKTIFK----DFYELEPHKFQNKTNG 474 (824)
T ss_dssp HHHHHHHSTTCHHHHHHHCSEEC-SSSCEEEHHHHHHHTCSCEEESSHHHHHHHHHTTTH----HHHHHCGGGEEECCCC
T ss_pred HHHHHHHcCCcHHHHHhhhhhhh-cCCCcccHHHHHHHhcCceeeEcHHHHHHHhhHHhH----HHHHcChhhcccccCC
Confidence 01111111221 134579999999999999999999999998765553 2333457899999999
Q ss_pred ccCCCC----CCCCcchhhhc-----------------cCcc-cc-----cchhhhHHH----HHHHcCCCCCCCCCCEE
Q 004879 587 IDTDAW----NPATDTFLKVQ-----------------YNAN-DL-----QGKAENKES----IRKHLGLSSADARKPLV 635 (725)
Q Consensus 587 ID~~~f----~P~~d~~l~~~-----------------ys~~-d~-----~gK~~~K~a----LRk~lGL~~~d~~~plV 635 (725)
||...| +|..++.++.+ |..| ++ ++|..+|.+ +++++|++ .+++.+++
T Consensus 475 I~~rrWl~~~NP~l~~lI~~~ig~~W~~~~~~l~~L~~y~~d~~~~~~~~~~K~~nK~~la~~l~~~~Gl~-vdpd~l~~ 553 (824)
T 2gj4_A 475 ITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVH-INPNSLFD 553 (824)
T ss_dssp BCTCCCCCCTCHHHHHHHHHHHCSGGGGCGGGGGGGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCTTSEEE
T ss_pred cChhhhcccCCHhHHHHHHHhcCchhhhCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cCCCcceE
Confidence 999999 89887777755 6652 34 578888887 88899997 47789999
Q ss_pred EEeecCcCCCCHHHH-HHHHHHhh---cC------CcEEEEEcCCCcccc------------cH----------------
Q 004879 636 GCITRLVPQKGVHLI-RHAIYRTL---EL------GGQFILLGSSPVPHI------------QV---------------- 677 (725)
Q Consensus 636 ~fVGRL~~qKGvdlL-ieA~~~L~---~~------~iqLVIvG~Gp~~~l------------e~---------------- 677 (725)
++|.|++.+||.+++ ++.+.++. +. +.+||++|.|...+. .+
T Consensus 554 g~vkRl~eYKRq~L~~l~~i~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIkli~~va~~in~Dp~v~~~lKVvF 633 (824)
T 2gj4_A 554 VQVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIF 633 (824)
T ss_dssp EEESCCCGGGTHHHHHHHHHHHHHHHHHCTTSCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCTTTGGGEEEEE
T ss_pred eeeecchhhcchhhHHHHHHHHHHHHHhCCCCCCCCEEEEEEEeCCHhHHHHHHHHHHHHHHHHHhccCcccCCceEEEE
Confidence 999999999999998 88888774 22 579999998763210 00
Q ss_pred ---------HHHHHhcCeEEEcCC--cccchHHHHHHc
Q 004879 678 ---------YPILLSSFSFLRKHI--FNICNLYIKLGQ 704 (725)
Q Consensus 678 ---------~~iyAaADIfVlPS~--~EpfGLv~LEAM 704 (725)
+.++++||++++||+ +||||++.|-||
T Consensus 634 l~nYdvslA~~I~~gaDv~l~~S~ag~EAsGTs~MKam 671 (824)
T 2gj4_A 634 LENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFM 671 (824)
T ss_dssp ETTCCHHHHHHHGGGCSEEEECCCTTSCSCCSHHHHHH
T ss_pred ECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHH
Confidence 189999999999999 999999999999
No 20
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=99.84 E-value=3.9e-21 Score=210.42 Aligned_cols=293 Identities=10% Similarity=0.031 Sum_probs=164.8
Q ss_pred CCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEe
Q 004879 330 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWV 409 (725)
Q Consensus 330 ~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~ 409 (725)
..+|||++|+..++| ...+|.+.+ +++.|+++| +|+|++..+..... ........ .. ++.. ..
T Consensus 12 ~~~MkIl~is~~~~p-~~~~~~~~~---l~~~l~~~G-~V~vi~~~~~~~~~--~~~~~~~~--~~---~~~~-----~~ 74 (406)
T 2hy7_A 12 IRRPCYLVLSSHDFR-TPRRANIHF---ITDQLALRG-TTRFFSLRYSRLSR--MKGDMRLP--LD---DTAN-----TV 74 (406)
T ss_dssp -CCSCEEEEESSCTT-SSSCCHHHH---HHHHHHHHS-CEEEEECSCBTTHH--HHTCTTGG--GG---GGTT-----SE
T ss_pred CCCceEEEEecccCC-ChhhhhHhH---HHHHHHhCC-ceEEEEecccHHHH--hhccchhh--hh---ccCc-----cc
Confidence 446999999998344 235666544 567778899 99999533321100 00000000 00 0000 01
Q ss_pred eeeCCeeEEEeCCCCCCcccccCCCCCCCchhhh--HHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCC
Q 004879 410 STIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRR--FSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKG 487 (725)
Q Consensus 410 ~~v~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r--~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~g 487 (725)
...+|++++....... .|....... ..... +.++.......+++...+|||||.++...+.++ .+...
T Consensus 75 ~~~~gv~v~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~DvIh~~~~~~~~~~-~~~~~----- 144 (406)
T 2hy7_A 75 VSHNGVDCYLWRTTVH--PFNTRRSWL--RPVEDAMFRWYAAHPPKQLLDWMRESDVIVFESGIAVAFI-ELAKR----- 144 (406)
T ss_dssp EEETTEEEEECCBSSC--CCCCCCGGG--HHHHHHHHHHHHHCCCHHHHHHHHHCSEEEEESSGGGGGH-HHHHH-----
T ss_pred eecCCeEEEeeccccC--Cccccchhh--hccchhHHHHHHHhHHHHHHHHhcCCCEEEECCchHHHHH-HHHHH-----
Confidence 1247888775432100 011000000 00010 111222111222221126999996654333211 12221
Q ss_pred CCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCC
Q 004879 488 LNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQ 567 (725)
Q Consensus 488 l~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~ 567 (725)
.++|+|+|+|+.+... . .+. ......+++..+..+|.|+++|+..++.+..
T Consensus 145 -~~~p~v~~~h~~~~~~-----~---~~~---------------~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~----- 195 (406)
T 2hy7_A 145 -VNPAAKLVYRASDGLS-----T---INV---------------ASYIEREFDRVAPTLDVIALVSPAMAAEVVS----- 195 (406)
T ss_dssp -HCTTSEEEEEESSCHH-----H---HTC---------------CHHHHHHHHHHGGGCSEEEESCGGGGGGCSC-----
T ss_pred -hCCCEEEEEeccchhh-----c---ccc---------------cHHHHHHHHHHHHhCCEEEEcCHHHHHHHHh-----
Confidence 3789999999864210 0 000 0011234567788999999999987665432
Q ss_pred CcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCH
Q 004879 568 GLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGV 647 (725)
Q Consensus 568 GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGv 647 (725)
.. ++.+||||+|.+.|.|... . + ..+.++|+|+||+.++||+
T Consensus 196 --------~~-~i~vipngvd~~~f~~~~~-----------------~----------~--~~~~~~i~~vGrl~~~Kg~ 237 (406)
T 2hy7_A 196 --------RD-NVFHVGHGVDHNLDQLGDP-----------------S----------P--YAEGIHAVAVGSMLFDPEF 237 (406)
T ss_dssp --------ST-TEEECCCCBCTTHHHHHCS-----------------C----------S--CCSSEEEEEECCTTBCHHH
T ss_pred --------cC-CEEEEcCCcChHhcCcccc-----------------c----------c--cCCCcEEEEEeccccccCH
Confidence 12 8999999999887654210 0 1 1133789999999999998
Q ss_pred HHHHHHHHHhhcCCcEEEEEcCCCccc--cc-----------H--HHHHHhcCeEEEcCCcccchHHHHHHc-------C
Q 004879 648 HLIRHAIYRTLELGGQFILLGSSPVPH--IQ-----------V--YPILLSSFSFLRKHIFNICNLYIKLGQ-------G 705 (725)
Q Consensus 648 dlLieA~~~L~~~~iqLVIvG~Gp~~~--le-----------~--~~iyAaADIfVlPS~~EpfGLv~LEAM-------g 705 (725)
+.++... ..+++|+|+|+|+... +. . ..+|++||++|+||.+|+||++++||| +
T Consensus 238 ---~~~l~~~-~~~~~l~ivG~g~~~~~~l~~~V~f~G~~~~~~l~~~~~~adv~v~ps~~E~~~~~~lEAm~Kl~eYla 313 (406)
T 2hy7_A 238 ---FVVASKA-FPQVTFHVIGSGMGRHPGYGDNVIVYGEMKHAQTIGYIKHARFGIAPYASEQVPVYLADSSMKLLQYDF 313 (406)
T ss_dssp ---HHHHHHH-CTTEEEEEESCSSCCCTTCCTTEEEECCCCHHHHHHHHHTCSEEECCBSCSCCCTTHHHHCHHHHHHHH
T ss_pred ---HHHHHHh-CCCeEEEEEeCchHHhcCCCCCEEEcCCCCHHHHHHHHHhcCEEEECCCcccCchHHHHHHHHHHHHhh
Confidence 4444332 2589999999987321 11 1 189999999999999999999999999 7
Q ss_pred CCcccc------CCCCCce-ee
Q 004879 706 GDLTVN------NNCEPWL-HH 720 (725)
Q Consensus 706 ~~~~V~------~~~~G~l-~~ 720 (725)
++.||+ ++.+|++ +.
T Consensus 314 ~G~PVIas~~v~~~~~G~l~v~ 335 (406)
T 2hy7_A 314 FGLPAVCPNAVVGPYKSRFGYT 335 (406)
T ss_dssp HTCCEEEEGGGTCSCSSEEEEC
T ss_pred CCCcEEEehhcccCcceEEEeC
Confidence 666643 4667887 53
No 21
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.80 E-value=7.2e-19 Score=186.05 Aligned_cols=257 Identities=11% Similarity=-0.054 Sum_probs=158.6
Q ss_pred CCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeee
Q 004879 332 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVST 411 (725)
Q Consensus 332 ~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~ 411 (725)
+|||++++. ..||....+..|+++|+++||+|+|+++..+.. ... +.
T Consensus 6 ~mkIl~~~~------~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~-~~~---~~----------------------- 52 (364)
T 1f0k_A 6 GKRLMVMAG------GTGGHVFPGLAVAHHLMAQGWQVRWLGTADRME-ADL---VP----------------------- 52 (364)
T ss_dssp -CEEEEECC------SSHHHHHHHHHHHHHHHTTTCEEEEEECTTSTH-HHH---GG-----------------------
T ss_pred CcEEEEEeC------CCccchhHHHHHHHHHHHcCCEEEEEecCCcch-hhh---cc-----------------------
Confidence 389999973 258888889999999999999999999764311 000 00
Q ss_pred eCCeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCC
Q 004879 412 IEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSA 491 (725)
Q Consensus 412 v~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~i 491 (725)
..|++++.++.. .+.+...........++..+.+.+..++++ .+|||||+|.+...+.+ .+... ..++
T Consensus 53 ~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~pDvv~~~~~~~~~~~-~~~~~-----~~~~ 120 (364)
T 1f0k_A 53 KHGIEIDFIRIS----GLRGKGIKALIAAPLRIFNAWRQARAIMKA--YKPDVVLGMGGYVSGPG-GLAAW-----SLGI 120 (364)
T ss_dssp GGTCEEEECCCC----CCTTCCHHHHHTCHHHHHHHHHHHHHHHHH--HCCSEEEECSSTTHHHH-HHHHH-----HTTC
T ss_pred ccCCceEEecCC----ccCcCccHHHHHHHHHHHHHHHHHHHHHHh--cCCCEEEEeCCcCchHH-HHHHH-----HcCC
Confidence 124555544321 011100000000011111122334445553 48999999976544322 22222 2479
Q ss_pred cEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCccc
Q 004879 492 RVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHS 571 (725)
Q Consensus 492 piV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~ 571 (725)
|+|++.|+.. +. . ..+.....+|.++++|+.. +
T Consensus 121 p~v~~~~~~~-----~~-~---------------------------~~~~~~~~~d~v~~~~~~~--------~------ 153 (364)
T 1f0k_A 121 PVVLHEQNGI-----AG-L---------------------------TNKWLAKIATKVMQAFPGA--------F------ 153 (364)
T ss_dssp CEEEEECSSS-----CC-H---------------------------HHHHHTTTCSEEEESSTTS--------S------
T ss_pred CEEEEecCCC-----Cc-H---------------------------HHHHHHHhCCEEEecChhh--------c------
Confidence 9999999752 10 0 0012345688998887532 1
Q ss_pred ccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCC-EEEEeecCcCCCCHHHH
Q 004879 572 TLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKP-LVGCITRLVPQKGVHLI 650 (725)
Q Consensus 572 ~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~p-lV~fVGRL~~qKGvdlL 650 (725)
+ ++.+|+||+|...|.+.. .++.+++++ +.+ ++++.||+.++||++.+
T Consensus 154 -----~-~~~~i~n~v~~~~~~~~~----------------------~~~~~~~~~---~~~~il~~~g~~~~~k~~~~l 202 (364)
T 1f0k_A 154 -----P-NAEVVGNPVRTDVLALPL----------------------PQQRLAGRE---GPVRVLVVGGSQGARILNQTM 202 (364)
T ss_dssp -----S-SCEECCCCCCHHHHTSCC----------------------HHHHHTTCC---SSEEEEEECTTTCCHHHHHHH
T ss_pred -----C-CceEeCCccchhhcccch----------------------hhhhcccCC---CCcEEEEEcCchHhHHHHHHH
Confidence 1 467999999987655421 134567653 445 45566799999999999
Q ss_pred HHHHHHhhcCCcE-EEEEcCCCcccccH-------------------HHHHHhcCeEEEcCCcccchHHHHHHcCCCccc
Q 004879 651 RHAIYRTLELGGQ-FILLGSSPVPHIQV-------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTV 710 (725)
Q Consensus 651 ieA~~~L~~~~iq-LVIvG~Gp~~~le~-------------------~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V 710 (725)
++|+..+.+ +++ ++++|+|+...+++ ..+|+.||++|+||. |++++|||+++.||
T Consensus 203 i~a~~~l~~-~~~~l~i~G~~~~~~l~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~sg----~~~~~EAma~G~Pv 277 (364)
T 1f0k_A 203 PQVAAKLGD-SVTIWHQSGKGSQQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSG----ALTVSEIAAAGLPA 277 (364)
T ss_dssp HHHHHHHGG-GEEEEEECCTTCHHHHHHHHHHTTCTTSEEESCCSCHHHHHHHCSEEEECCC----HHHHHHHHHHTCCE
T ss_pred HHHHHHhcC-CcEEEEEcCCchHHHHHHHHhhcCCCceEEecchhhHHHHHHhCCEEEECCc----hHHHHHHHHhCCCE
Confidence 999999865 788 56789887432211 189999999999994 99999999666554
Q ss_pred c-CCCCC
Q 004879 711 N-NNCEP 716 (725)
Q Consensus 711 ~-~~~~G 716 (725)
+ .+++|
T Consensus 278 i~~~~~g 284 (364)
T 1f0k_A 278 LFVPFQH 284 (364)
T ss_dssp EECCCCC
T ss_pred EEeeCCC
Confidence 3 34443
No 22
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.76 E-value=8.2e-17 Score=181.39 Aligned_cols=248 Identities=12% Similarity=0.036 Sum_probs=156.9
Q ss_pred CCCCeEEEEcCccCCCCCCCcHHHHHHHHHHH--HHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeee
Q 004879 330 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKA--LQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKV 407 (725)
Q Consensus 330 ~~~MkILhIs~E~~P~~kvGGlg~vV~~Lara--L~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV 407 (725)
.++|||+++++.+. .||++.++..|+++ +.+.||+|+|+++....... ....++
T Consensus 203 ~~~~rI~~~~~~~~----~~g~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~-~~~~~~------------------- 258 (568)
T 2vsy_A 203 KGPLRVGFVSNGFG----AHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGST-LRTRLA------------------- 258 (568)
T ss_dssp SSCEEEEEEESCSS----SSHHHHHHHHHHHHHHHHCTTEEEEEEESSCCCSCH-HHHHHH-------------------
T ss_pred CCCeEEEEECcccc----cChHHHHHHHHHhhccCCcccEEEEEEECCCCCccH-HHHHHH-------------------
Confidence 45799999998764 37899999999999 78889999999875321110 000000
Q ss_pred EeeeeCCeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchh--hHHHHHHHhhcc
Q 004879 408 WVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTA--FVAPLYWDLYVP 485 (725)
Q Consensus 408 ~~~~v~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa--~vapl~~~~ya~ 485 (725)
..+ .++.+.+ .. . ..+.+++++ .+|||||+|+.++. .+ +.+ .
T Consensus 259 ----~~~-~~~~~~~------------~~----~-------~~l~~~i~~--~~~Div~~~~~~~~~~~~-~~~-~---- 302 (568)
T 2vsy_A 259 ----QAS-TLHDVTA------------LG----H-------LATAKHIRH--HGIDLLFDLRGWGGGGRP-EVF-A---- 302 (568)
T ss_dssp ----HTS-EEEECTT------------CC----H-------HHHHHHHHH--TTCSEEEECSSCTTCSSC-HHH-H----
T ss_pred ----hcC-eEEECCC------------CC----H-------HHHHHHHHh--CCCCEEEECCCCCCcchH-HHH-h----
Confidence 011 1111110 00 0 123344553 58999999875542 11 121 1
Q ss_pred CCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhcc
Q 004879 486 KGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEG 565 (725)
Q Consensus 486 ~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~ 565 (725)
....|+++|.|+..... ++. . + -+..+|.++++|+.... +
T Consensus 303 --~~~~~~~~~~~~~~~~~----------~~~--~------~--------------~~~~~d~~i~~s~~~~~------~ 342 (568)
T 2vsy_A 303 --LRPAPVQVNWLAYPGTS----------GAP--W------M--------------DYVLGDAFALPPALEPF------Y 342 (568)
T ss_dssp --TCCSSEEEEESSSSSCC----------CCT--T------C--------------CEEEECTTTSCTTTGGG------C
T ss_pred --cCCCceeEeeecCCccc----------CCC--C------c--------------eEEEECCCcCCcccccC------C
Confidence 13578999998753110 110 0 0 01236888888874321 2
Q ss_pred CCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCC
Q 004879 566 GQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQK 645 (725)
Q Consensus 566 g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qK 645 (725)
..++.+|||+++.....|.. .+...|+.+|+++ .++++++||+.+ |
T Consensus 343 -----------~~~i~~ipn~~~~~~~~~~~------------------~~~~~r~~~~~~~----~~~v~~~g~~~~-K 388 (568)
T 2vsy_A 343 -----------SEHVLRLQGAFQPSDTSRVV------------------AEPPSRTQCGLPE----QGVVLCCFNNSY-K 388 (568)
T ss_dssp -----------SSEEEECSSCSCCCCTTCCC------------------CCCCCTGGGTCCT----TSCEEEECCCGG-G
T ss_pred -----------cceeEcCCCcCCCCCCCCCC------------------CCCCCccccCCCC----CCEEEEeCCccc-c
Confidence 26899999943322111100 0112456788873 345669999999 9
Q ss_pred CHHHHHHHHHHhhc--CCcEEEEEc-CCCccc-c---------c-H-------------HHHHHhcCeEEEcCCcccchH
Q 004879 646 GVHLIRHAIYRTLE--LGGQFILLG-SSPVPH-I---------Q-V-------------YPILLSSFSFLRKHIFNICNL 698 (725)
Q Consensus 646 GvdlLieA~~~L~~--~~iqLVIvG-~Gp~~~-l---------e-~-------------~~iyAaADIfVlPS~~EpfGL 698 (725)
|++.+++|+..+.+ ++++|+|+| +|+... + . . ..+|++||+||+||.+ +||+
T Consensus 389 ~~~~li~a~~~l~~~~~~~~l~i~G~~g~~~~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~-~~g~ 467 (568)
T 2vsy_A 389 LNPQSMARMLAVLREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPY-NAHT 467 (568)
T ss_dssp CCHHHHHHHHHHHHHCTTCEEEEECCSTTHHHHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGGCSEEECCSSS-CCSH
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHhcCCEEeeCCCC-CCcH
Confidence 99999999999864 589999999 776431 1 1 1 1899999999999999 9999
Q ss_pred HHHHHcCCCccccC
Q 004879 699 YIKLGQGGDLTVNN 712 (725)
Q Consensus 699 v~LEAMg~~~~V~~ 712 (725)
+++|||+++.||+.
T Consensus 468 ~~lEAma~G~Pvv~ 481 (568)
T 2vsy_A 468 TASDALWTGCPVLT 481 (568)
T ss_dssp HHHHHHHTTCCEEB
T ss_pred HHHHHHhCCCCEEe
Confidence 99999988888655
No 23
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.75 E-value=5.4e-18 Score=190.86 Aligned_cols=225 Identities=14% Similarity=0.019 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCccc
Q 004879 447 FSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDR 526 (725)
Q Consensus 447 FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~ 526 (725)
+++..++.+...-..+||||+|+|+..+++ .++... ..++|+++++|.. +|...+.. .++.
T Consensus 109 vN~~fa~~l~~~~~~~DiV~vHdyhl~~l~-~~lr~~----~~~~~i~~~~H~p-----fp~~~~~~-~lp~-------- 169 (482)
T 1uqt_A 109 VNALLADKLLPLLQDDDIIWIHDYHLLPFA-HELRKR----GVNNRIGFFLHIP-----FPTPEIFN-ALPT-------- 169 (482)
T ss_dssp HHHHHHHHHGGGCCTTCEEEEESGGGTTHH-HHHHHT----TCCSCEEEECCSC-----CCCHHHHT-TSTT--------
T ss_pred HHHHHHHHHHHhcCCCCEEEEECchHHHHH-HHHHHh----CCCCcEEEEEcCC-----CCCHHHHh-hCcc--------
Confidence 444444444433346799999999988774 444321 2479999999974 22211100 1110
Q ss_pred ccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhcc-CCCccc----ccc--cCCCcEEEEeCCccCCCCCCCCcch
Q 004879 527 MQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEG-GQGLHS----TLN--FHSKKFVGILNGIDTDAWNPATDTF 599 (725)
Q Consensus 527 l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~-g~GL~~----~l~--~~~~Kv~vIpNGID~~~f~P~~d~~ 599 (725)
+ .-+..++..+|.+.+.++.+++.....-- --+.+. .+. ....++.+||||||.+.|.|...
T Consensus 170 --------~-~~il~~ll~~d~i~f~~~~~~~~f~~~~~~~l~~~~~~~~~~~~~g~~~~v~vip~GID~~~f~~~~~-- 238 (482)
T 1uqt_A 170 --------Y-DTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTAWGKAFRTEVYPIGIEPKEIAKQAA-- 238 (482)
T ss_dssp --------H-HHHHHHHTTSSEEEESSHHHHHHHHHHHHHHSCEEEETTTEEEETTEEEEEEECCCCCCHHHHHHHHH--
T ss_pred --------H-HHHHHhhhccCeEEEECHHHHHHHHHHHHHHhCCccccCCeEEECCeEEEEEEEeccCCHHHHHHHhc--
Confidence 0 01122344567777777766655432100 000000 011 12357899999999887754210
Q ss_pred hhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhcC------CcEEEEEcCC---
Q 004879 600 LKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL------GGQFILLGSS--- 670 (725)
Q Consensus 600 l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~~------~iqLVIvG~G--- 670 (725)
+. . ... ...+|+++| ++++|+++||+.+.||++.+++|++++++. +++|+++|.+
T Consensus 239 -----~~---~-~~~-~~~lr~~~~------~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vG~p~~~ 302 (482)
T 1uqt_A 239 -----GP---L-PPK-LAQLKAELK------NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRG 302 (482)
T ss_dssp -----SC---C-CHH-HHHHHHHTT------TCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCST
T ss_pred -----Cc---c-hHH-HHHHHHHhC------CCEEEEEEeCCcccCCHHHHHHHHHHHHHhCccccCcEEEEEEECCCcc
Confidence 00 0 011 456788886 358999999999999999999999998642 4789999853
Q ss_pred --Ccc-----cc--------------------------cH-H--HHHHhcCeEEEcCCcccchHHHHHHcCCCc------
Q 004879 671 --PVP-----HI--------------------------QV-Y--PILLSSFSFLRKHIFNICNLYIKLGQGGDL------ 708 (725)
Q Consensus 671 --p~~-----~l--------------------------e~-~--~iyAaADIfVlPS~~EpfGLv~LEAMg~~~------ 708 (725)
+.. .+ .. + .+|++||+||+||.+|+||+|++|||+++.
T Consensus 303 ~~~~~~~l~~~l~~l~~~in~~~g~~~~~~v~~~~g~v~~~el~~ly~~ADv~v~pS~~EGfgLv~lEAmA~g~~~~~gp 382 (482)
T 1uqt_A 303 DVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGV 382 (482)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHCBTTBCSEEEECSCCCHHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCE
T ss_pred chHHHHHHHHHHHHHHHHHhhhcccCCCceEEEeCCCCCHHHHHHHHHHccEEEECCCcccCCchHHHHHHhCCCCCCCC
Confidence 110 00 01 1 899999999999999999999999996653
Q ss_pred cccCCCCCc
Q 004879 709 TVNNNCEPW 717 (725)
Q Consensus 709 ~V~~~~~G~ 717 (725)
+|....+|.
T Consensus 383 vV~S~~~G~ 391 (482)
T 1uqt_A 383 LVLSQFAGA 391 (482)
T ss_dssp EEEETTBGG
T ss_pred EEEECCCCC
Confidence 454554443
No 24
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.68 E-value=7.2e-16 Score=163.36 Aligned_cols=190 Identities=13% Similarity=0.063 Sum_probs=119.1
Q ss_pred HHHHHHHcCCCceEEEECCC-chhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccc
Q 004879 451 ALELLLQAGKQPDIIHCHDW-QTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQD 529 (725)
Q Consensus 451 vlelL~~~~~kPDIIH~Hdw-~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d 529 (725)
+.+++++ .+|||||+|.. ..++++.+ ... ..++|+|++.|+... ... . ..
T Consensus 87 l~~~l~~--~~pDvv~~~~~~~~~~~~~~-~~~-----~~~ip~v~~~~~~~~-~~~----~--~~-------------- 137 (375)
T 3beo_A 87 LDKVMKE--AKPDIVLVHGDTTTTFIASL-AAF-----YNQIPVGHVEAGLRT-WDK----Y--SP-------------- 137 (375)
T ss_dssp HHHHHHH--HCCSEEEEETTSHHHHHHHH-HHH-----HTTCCEEEESCCCCC-SCT----T--SS--------------
T ss_pred HHHHHHH--hCCCEEEEeCCchHHHHHHH-HHH-----HHCCCEEEEeccccc-ccc----c--CC--------------
Confidence 4445554 58999999964 23332222 221 147999988886521 000 0 00
Q ss_pred cccccchhhhhhhh-hhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCC-ccCCCCCCCCcchhhhccCcc
Q 004879 530 NSAHDRINPLKGAI-VFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNG-IDTDAWNPATDTFLKVQYNAN 607 (725)
Q Consensus 530 ~~~~~~in~~k~ai-~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNG-ID~~~f~P~~d~~l~~~ys~~ 607 (725)
+. ..+.+..+ ..+|.++++|+..++.+.. . | .+..++.+|+|| +|...|.+...
T Consensus 138 --~~--~~~~~~~~~~~~d~ii~~s~~~~~~~~~--~--g------~~~~~i~vi~n~~~d~~~~~~~~~---------- 193 (375)
T 3beo_A 138 --YP--EEMNRQLTGVMADLHFSPTAKSATNLQK--E--N------KDESRIFITGNTAIDALKTTVKET---------- 193 (375)
T ss_dssp --TT--HHHHHHHHHHHCSEEEESSHHHHHHHHH--T--T------CCGGGEEECCCHHHHHHHHHCCSS----------
T ss_pred --Ch--hHhhhhHHhhhhheeeCCCHHHHHHHHH--c--C------CCcccEEEECChhHhhhhhhhhhh----------
Confidence 00 01123223 3599999999988887754 1 2 235689999999 88765543210
Q ss_pred cccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCC-CCHHHHHHHHHHhhc--CCcEEEEEcCCCccc----c----c
Q 004879 608 DLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQ-KGVHLIRHAIYRTLE--LGGQFILLGSSPVPH----I----Q 676 (725)
Q Consensus 608 d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~q-KGvdlLieA~~~L~~--~~iqLVIvG~Gp~~~----l----e 676 (725)
.+..+++.+ + ++..+++++||+.++ ||++.+++|+..+.+ .++++++ |.|+... + .
T Consensus 194 -------~~~~~~~~~--~---~~~~vl~~~gr~~~~~K~~~~li~a~~~l~~~~~~~~~i~-~~g~~~~~~~~~~~~~~ 260 (375)
T 3beo_A 194 -------YSHPVLEKL--G---NNRLVLMTAHRRENLGEPMRNMFRAIKRLVDKHEDVQVVY-PVHMNPVVRETANDILG 260 (375)
T ss_dssp -------CCCHHHHTT--T---TSEEEEEECCCGGGTTHHHHHHHHHHHHHHHHCTTEEEEE-ECCSCHHHHHHHHHHHT
T ss_pred -------hhHHHHHhc--c---CCCeEEEEecccccchhHHHHHHHHHHHHHhhCCCeEEEE-eCCCCHHHHHHHHHHhh
Confidence 112244443 2 133567899999886 999999999998865 3788655 6554321 1 0
Q ss_pred --H-------------HHHHHhcCeEEEcCCcccchHHHHHHcCCCcccc
Q 004879 677 --V-------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVN 711 (725)
Q Consensus 677 --~-------------~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V~ 711 (725)
. ..+|++||++|+|| |.+++|||+++.||+
T Consensus 261 ~~~~v~~~g~~~~~~~~~~~~~ad~~v~~s-----g~~~lEA~a~G~Pvi 305 (375)
T 3beo_A 261 DYGRIHLIEPLDVIDFHNVAARSYLMLTDS-----GGVQEEAPSLGVPVL 305 (375)
T ss_dssp TCTTEEEECCCCHHHHHHHHHTCSEEEECC-----HHHHHHHHHHTCCEE
T ss_pred ccCCEEEeCCCCHHHHHHHHHhCcEEEECC-----CChHHHHHhcCCCEE
Confidence 0 18999999999999 778999997766655
No 25
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.63 E-value=2.2e-15 Score=160.47 Aligned_cols=201 Identities=11% Similarity=0.059 Sum_probs=123.6
Q ss_pred HHHHHHHHHcCCCceEEEECCC-chhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccc
Q 004879 449 RAALELLLQAGKQPDIIHCHDW-QTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRM 527 (725)
Q Consensus 449 ravlelL~~~~~kPDIIH~Hdw-~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l 527 (725)
..+..++++ .+|||||+|+. ...+.+ .+... ..++|+|++.|+......+ . .
T Consensus 76 ~~l~~~l~~--~~pDvv~~~~~~~~~~~~-~~~a~-----~~~ip~v~~~~~~~~~~~~--~-----~------------ 128 (384)
T 1vgv_A 76 EGLKPILAE--FKPDVVLVHGDTTTTLAT-SLAAF-----YQRIPVGHVEAGLRTGDLY--S-----P------------ 128 (384)
T ss_dssp HHHHHHHHH--HCCSEEEEETTCHHHHHH-HHHHH-----TTTCCEEEESCCCCCSCTT--S-----S------------
T ss_pred HHHHHHHHH--hCCCEEEEeCCchHHHHH-HHHHH-----HHCCCEEEEeccccccccc--C-----C------------
Confidence 334455554 58999999975 444332 22221 2589999999976310000 0 0
Q ss_pred cccccccchhhhhhh-hhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCc-cCCCCCCCCcchhhhccC
Q 004879 528 QDNSAHDRINPLKGA-IVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGI-DTDAWNPATDTFLKVQYN 605 (725)
Q Consensus 528 ~d~~~~~~in~~k~a-i~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGI-D~~~f~P~~d~~l~~~ys 605 (725)
+.. ...+.. ...+|.++++|+..++.+.. + | .+..++.+|+||+ |...+.+. ..
T Consensus 129 ----~~~--~~~~~~~~~~~d~ii~~s~~~~~~l~~--~--g------~~~~~i~vi~n~~~d~~~~~~~-------~~- 184 (384)
T 1vgv_A 129 ----WPE--EANRTLTGHLAMYHFSPTETSRQNLLR--E--N------VADSRIFITGNTVIDALLWVRD-------QV- 184 (384)
T ss_dssp ----TTH--HHHHHHHHTTCSEEEESSHHHHHHHHH--T--T------CCGGGEEECCCHHHHHHHHHHH-------HT-
T ss_pred ----Cch--HhhHHHHHhhccEEEcCcHHHHHHHHH--c--C------CChhhEEEeCChHHHHHHhhhh-------cc-
Confidence 000 011222 34599999999988877754 2 2 2346899999995 43221110 00
Q ss_pred cccccchhhhHHHHHHHcC-CCCCCCCCCEEEEeecCcCC-CCHHHHHHHHHHhhc--CCcEEEEE-cCCC-cc-ccc--
Q 004879 606 ANDLQGKAENKESIRKHLG-LSSADARKPLVGCITRLVPQ-KGVHLIRHAIYRTLE--LGGQFILL-GSSP-VP-HIQ-- 676 (725)
Q Consensus 606 ~~d~~gK~~~K~aLRk~lG-L~~~d~~~plV~fVGRL~~q-KGvdlLieA~~~L~~--~~iqLVIv-G~Gp-~~-~le-- 676 (725)
......+..+++.+| +++ .+..+++++||+.++ ||++.+++|+..+.+ .+++|+++ |.++ .. .++
T Consensus 185 ----~~~~~~~~~~~~~~~~~~~--~~~~vl~~~gr~~~~~kg~~~li~a~~~l~~~~~~~~l~i~~g~~~~~~~~l~~~ 258 (384)
T 1vgv_A 185 ----MSSDKLRSELAANYPFIDP--DKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQIVYPVHLNPNVREPVNRI 258 (384)
T ss_dssp ----TTCHHHHHHHHTTCTTCCT--TSEEEEEECCCBSSCCHHHHHHHHHHHHHHHHCTTEEEEEECCBCHHHHHHHHHH
T ss_pred ----ccchhhhHHHHHhccccCC--CCCEEEEEeCCccccchHHHHHHHHHHHHHhhCCCeEEEEEcCCCHHHHHHHHHH
Confidence 000001235677888 752 133478899999987 999999999998865 37899886 5443 11 110
Q ss_pred ---------------H--HHHHHhcCeEEEcCCcccchHHHHHHcCCCcccc
Q 004879 677 ---------------V--YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVN 711 (725)
Q Consensus 677 ---------------~--~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V~ 711 (725)
. ..+|++||++|+|| |.+++|||+++.||+
T Consensus 259 ~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~~S-----g~~~lEA~a~G~PvI 305 (384)
T 1vgv_A 259 LGHVKNVILIDPQEYLPFVWLMNHAWLILTDS-----GGIQEEAPSLGKPVL 305 (384)
T ss_dssp HTTCTTEEEECCCCHHHHHHHHHHCSEEEESS-----STGGGTGGGGTCCEE
T ss_pred hhcCCCEEEeCCCCHHHHHHHHHhCcEEEECC-----cchHHHHHHcCCCEE
Confidence 0 18999999999999 445899997777755
No 26
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.57 E-value=1.8e-14 Score=162.37 Aligned_cols=206 Identities=11% Similarity=-0.010 Sum_probs=134.6
Q ss_pred CceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhh
Q 004879 461 QPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLK 540 (725)
Q Consensus 461 kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k 540 (725)
.-|+|-+||+|..+++ .++... ..+.++.|.+|.. +|...+.. .+|.+ ...-+-
T Consensus 149 ~~D~VwVhDYhL~llp-~~lR~~----~~~~~igfFlHiP-----fPs~e~f~-~Lp~~---------------~r~ell 202 (496)
T 3t5t_A 149 ADPVYLVHDYQLVGVP-ALLREQ----RPDAPILLFVHIP-----WPSADYWR-ILPKE---------------IRTGIL 202 (496)
T ss_dssp SSCEEEEESGGGTTHH-HHHHHH----CTTSCEEEECCSC-----CCCHHHHT-TSCHH---------------HHHHHH
T ss_pred CCCEEEEeCccHhHHH-HHHHhh----CCCCeEEEEEcCC-----CCCHHHHh-hCcHh---------------HHHHHH
Confidence 4689999999998884 454432 3578999999964 34322211 11210 011223
Q ss_pred hhhhhccEEEEeCHHHHHHHHhh---ccCCCccc-----ccc--cCCCcEEEEeCCccCCCCCCCCcchhhhccCccccc
Q 004879 541 GAIVFSNIVTTVSPSYAQEVRTS---EGGQGLHS-----TLN--FHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQ 610 (725)
Q Consensus 541 ~ai~~AD~VitVS~~~a~ev~~~---~~g~GL~~-----~l~--~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~ 610 (725)
.++..||.|.+-++.|++..... .. .|+.. .+. ....++.++|+|||++.|.|...
T Consensus 203 ~gll~~DligF~t~~y~~~Fl~~~~r~l-~g~~~~~~~~~v~~~gr~v~v~viP~GID~~~f~~~~~------------- 268 (496)
T 3t5t_A 203 HGMLPATTIGFFADRWCRNFLESVADLL-PDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNP------------- 268 (496)
T ss_dssp HHHTTSSEEEESSHHHHHHHHHHHHHHC-TTCEEETTTTEEEETTEEEEEEECCCCBCGGGC----C-------------
T ss_pred HHHHhCCEEEEecHHHHHHHHHHHHHHh-cCCcccccCCeEEECCEEEEEEEeccEeCHHHhchhhH-------------
Confidence 56778999999999988774331 11 01110 111 12346789999999999987421
Q ss_pred chhhhHHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhcC-----CcEEEEEcC-----CCcc-cccH--
Q 004879 611 GKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL-----GGQFILLGS-----SPVP-HIQV-- 677 (725)
Q Consensus 611 gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~~-----~iqLVIvG~-----Gp~~-~le~-- 677 (725)
..+..+|+++| ++++|++|||+.+.||+..+++|+ ++++. .+.|+++|. ++.. .+++
T Consensus 269 ---~~~~~lr~~~~------~~~lIl~VgRLd~~KGi~~lL~Af-~ll~~~P~~~~v~Lv~Vg~psr~~~~~y~~l~~~l 338 (496)
T 3t5t_A 269 ---QLPEGIEEWAD------GHRLVVHSGRTDPIKNAERAVRAF-VLAARGGGLEKTRMLVRMNPNRLYVPANADYVHRV 338 (496)
T ss_dssp ---CCCTTHHHHHT------TSEEEEEEEESSGGGCHHHHHHHH-HHHHHTSSCTTEEEEEEEECCCTTSHHHHHHHHHH
T ss_pred ---HHHHHHHHHhC------CceEEEEcccCccccCHHHHHHHH-HHHHhCcccceEEEEEEECCCCCCchHHHHHHHHH
Confidence 01245777776 358999999999999999999999 87642 356888763 2211 0100
Q ss_pred ---------------------------HHHHHhcCeEEEcCCcccchHHHHHHcCC----CccccCCCCC
Q 004879 678 ---------------------------YPILLSSFSFLRKHIFNICNLYIKLGQGG----DLTVNNNCEP 716 (725)
Q Consensus 678 ---------------------------~~iyAaADIfVlPS~~EpfGLv~LEAMg~----~~~V~~~~~G 716 (725)
..+|++||+||+||.+|+||+|++|||++ +.+|....+|
T Consensus 339 ~~lv~~in~~~g~~~V~f~g~v~~~el~aly~~ADv~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~aG 408 (496)
T 3t5t_A 339 ETAVAEANAELGSDTVRIDNDNDVNHTIACFRRADLLIFNSTVDGQNLSTFEAPLVNERDADVILSETCG 408 (496)
T ss_dssp HHHHHHHHHHHCTTSEEEEECCCHHHHHHHHHHCSEEEECCSSBSCCSHHHHHHHHCSSCCEEEEETTBT
T ss_pred HHHHHHhccccCCcCEEEeCCCCHHHHHHHHHhccEEEECcccccCChhHHHHHHhCCCCCCEEEeCCCC
Confidence 18999999999999999999999999965 3455555544
No 27
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.54 E-value=1.5e-14 Score=140.40 Aligned_cols=113 Identities=23% Similarity=0.225 Sum_probs=88.1
Q ss_pred EEeCCccCCCCC--CCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCc-CCCCHHHHHHHHHHhh
Q 004879 582 GILNGIDTDAWN--PATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLV-PQKGVHLIRHAIYRTL 658 (725)
Q Consensus 582 vIpNGID~~~f~--P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~-~qKGvdlLieA~~~L~ 658 (725)
+||||||.+.|. |... .+.+++..+|+++|++ +.++|+|+||+. +.||++.+++|+..+.
T Consensus 1 gipngvd~~~f~~~~~~~-------------~~~~~~~~~r~~~~~~----~~~~i~~~G~~~~~~K~~~~li~a~~~l~ 63 (200)
T 2bfw_A 1 GSHNGIDCSFWNESYLTG-------------SRDERKKSLLSKFGMD----EGVTFMFIGRFDRGQKGVDVLLKAIEILS 63 (200)
T ss_dssp ----CCCTTTSSGGGSCS-------------CHHHHHHHHHHHTTCC----SCEEEEEESCBCSSSSCHHHHHHHHHHHT
T ss_pred CCCCccChhhcccccccc-------------chhhHHHHHHHHcCCC----CCCEEEEeeccccccCCHHHHHHHHHHHH
Confidence 589999999998 7521 0122467899999997 346999999999 9999999999999985
Q ss_pred --c--CCcEEEEEcCCC--ccc-------------c-----cH---HHHHHhcCeEEEcCCcccchHHHHHHcCCCcccc
Q 004879 659 --E--LGGQFILLGSSP--VPH-------------I-----QV---YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVN 711 (725)
Q Consensus 659 --~--~~iqLVIvG~Gp--~~~-------------l-----e~---~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V~ 711 (725)
+ .+++|+|+|.|+ ... + .. ..+|+.||++|+||.+|+||++++|||+++.||+
T Consensus 64 ~~~~~~~~~l~i~G~~~~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~PvI 143 (200)
T 2bfw_A 64 SKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPI 143 (200)
T ss_dssp TSGGGGGEEEEEECCBCHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEE
T ss_pred hhccCCCeEEEEECCCChHHHHHHHHHHHhcCCEEEEeccCCHHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCEE
Confidence 4 379999999988 221 1 10 1899999999999999999999999997776654
No 28
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.48 E-value=2.3e-13 Score=144.85 Aligned_cols=135 Identities=13% Similarity=0.064 Sum_probs=89.4
Q ss_pred hhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCc-cCCCCCCCCcchhhhccCcccccchhhhHHHHHH
Q 004879 543 IVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGI-DTDAWNPATDTFLKVQYNANDLQGKAENKESIRK 621 (725)
Q Consensus 543 i~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGI-D~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk 621 (725)
...+|.++++|+..++.+... | .++.++.+|+|++ |...+.+ .+..+++
T Consensus 144 ~~~~~~~~~~s~~~~~~l~~~----g------~~~~ki~vi~n~~~d~~~~~~--------------------~~~~~~~ 193 (376)
T 1v4v_A 144 DVLTDLDFAPTPLAKANLLKE----G------KREEGILVTGQTGVDAVLLAA--------------------KLGRLPE 193 (376)
T ss_dssp HHHCSEEEESSHHHHHHHHTT----T------CCGGGEEECCCHHHHHHHHHH--------------------HHCCCCT
T ss_pred HHHhceeeCCCHHHHHHHHHc----C------CCcceEEEECCchHHHHhhhh--------------------hhhHHHH
Confidence 456899999999888776541 2 2356899999965 4321110 0001112
Q ss_pred HcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhc--CCcEEEEE-cCCC-cc-ccc----------------H---
Q 004879 622 HLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILL-GSSP-VP-HIQ----------------V--- 677 (725)
Q Consensus 622 ~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~--~~iqLVIv-G~Gp-~~-~le----------------~--- 677 (725)
.++ ++.++++++||+..+||++.+++|+..+.+ .+++++++ |+|+ .. .++ .
T Consensus 194 ~~~-----~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~lv~~~g~~~~~~~~l~~~~~~~~~v~~~g~~g~~~~ 268 (376)
T 1v4v_A 194 GLP-----EGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYPVHLNPVVREAVFPVLKGVRNFVLLDPLEYGSM 268 (376)
T ss_dssp TCC-----SSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTSEEEEECCSCHHHHHHHHHHHTTCTTEEEECCCCHHHH
T ss_pred hcC-----CCCEEEEEeCcccchHHHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHHHHHHHhccCCCEEEECCCCHHHH
Confidence 221 133567789999999999999999998865 37899886 7664 11 110 0
Q ss_pred HHHHHhcCeEEEcCCcccchHHHHHHcCCCcccc--CCCCCc
Q 004879 678 YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVN--NNCEPW 717 (725)
Q Consensus 678 ~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V~--~~~~G~ 717 (725)
..+|++||++|+|| + |+ ++|||+++.||+ +.++|.
T Consensus 269 ~~~~~~ad~~v~~S--~--g~-~lEA~a~G~PvI~~~~~~~~ 305 (376)
T 1v4v_A 269 AALMRASLLLVTDS--G--GL-QEEGAALGVPVVVLRNVTER 305 (376)
T ss_dssp HHHHHTEEEEEESC--H--HH-HHHHHHTTCCEEECSSSCSC
T ss_pred HHHHHhCcEEEECC--c--CH-HHHHHHcCCCEEeccCCCcc
Confidence 18999999999999 3 55 889998777765 344553
No 29
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.40 E-value=3.2e-12 Score=138.53 Aligned_cols=128 Identities=11% Similarity=-0.043 Sum_probs=92.8
Q ss_pred hhhhhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHH
Q 004879 539 LKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKES 618 (725)
Q Consensus 539 ~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~a 618 (725)
.+..+..+|.|+++|+..++.+.. . |. . ++.+|+||. |++...+ .
T Consensus 147 ~~~~~~~~d~ii~~S~~~~~~l~~--~--g~-------~-ki~vi~n~~----f~~~~~~------~------------- 191 (374)
T 2xci_A 147 EKILSKKFDLIIMRTQEDVEKFKT--F--GA-------K-RVFSCGNLK----FICQKGK------G------------- 191 (374)
T ss_dssp HHHHHTTCSEEEESCHHHHHHHHT--T--TC-------C-SEEECCCGG----GCCCCCS------C-------------
T ss_pred HHHHHHhCCEEEECCHHHHHHHHH--c--CC-------C-eEEEcCCCc----cCCCcCh------h-------------
Confidence 355577899999999998887764 2 21 2 889999983 3332100 0
Q ss_pred HHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhc--CCcEEEEEcCCCcc--cc---------c---------
Q 004879 619 IRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVP--HI---------Q--------- 676 (725)
Q Consensus 619 LRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~--~~iqLVIvG~Gp~~--~l---------e--------- 676 (725)
+ .+ ..++++++|+ .+||++.+++|+..+.+ ++++|+|+|+||.+ .+ .
T Consensus 192 --~--~l-----~~~vi~~~~~--~~k~~~~ll~A~~~l~~~~p~~~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~ 260 (374)
T 2xci_A 192 --I--KL-----KGEFIVAGSI--HTGEVEIILKAFKEIKKTYSSLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEG 260 (374)
T ss_dssp --C--CC-----SSCEEEEEEE--CGGGHHHHHHHHHHHHTTCTTCEEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCS
T ss_pred --h--hh-----cCCEEEEEeC--CCchHHHHHHHHHHHHhhCCCcEEEEECCCHHHHHHHHHHHHHCCCceEEecCCCC
Confidence 0 01 1267777775 47899999999999875 47999999998854 11 1
Q ss_pred --------H--HHHHHhcCeEEEcCCc-ccchHHHHHHcCCCccccC
Q 004879 677 --------V--YPILLSSFSFLRKHIF-NICNLYIKLGQGGDLTVNN 712 (725)
Q Consensus 677 --------~--~~iyAaADIfVlPS~~-EpfGLv~LEAMg~~~~V~~ 712 (725)
. ..+|+.||++++||.+ |++|++++|||+++.||+.
T Consensus 261 ~v~~~~~~~dl~~~y~~aDv~vl~ss~~e~gg~~~lEAmA~G~PVI~ 307 (374)
T 2xci_A 261 DVILVDRFGILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIY 307 (374)
T ss_dssp SEEECCSSSCHHHHGGGEEEEEECSSSSSSCCCCCHHHHTTTCCEEE
T ss_pred cEEEECCHHHHHHHHHhCCEEEECCcccCCCCcCHHHHHHhCCCEEE
Confidence 0 1799999999998654 7789999999999988874
No 30
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.28 E-value=4e-12 Score=119.91 Aligned_cols=80 Identities=13% Similarity=0.085 Sum_probs=69.1
Q ss_pred CEEEEeecCcCCCCHHHHHHHHHHhhc-CCcEEEEEcCCCccc-ccH-------------------HHHHHhcCeEEEcC
Q 004879 633 PLVGCITRLVPQKGVHLIRHAIYRTLE-LGGQFILLGSSPVPH-IQV-------------------YPILLSSFSFLRKH 691 (725)
Q Consensus 633 plV~fVGRL~~qKGvdlLieA~~~L~~-~~iqLVIvG~Gp~~~-le~-------------------~~iyAaADIfVlPS 691 (725)
++|+|+||+.++||++.+++|+..+.+ .+++|+|+|+|+... +++ ..+|+.||++|+||
T Consensus 3 ~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~adv~v~ps 82 (166)
T 3qhp_A 3 FKIAMVGRYSNEKNQSVLIKAVALSKYKQDIVLLLKGKGPDEKKIKLLAQKLGVKAEFGFVNSNELLEILKTCTLYVHAA 82 (166)
T ss_dssp EEEEEESCCSTTTTHHHHHHHHHTCTTGGGEEEEEECCSTTHHHHHHHHHHHTCEEECCCCCHHHHHHHHTTCSEEEECC
T ss_pred eEEEEEeccchhcCHHHHHHHHHHhccCCCeEEEEEeCCccHHHHHHHHHHcCCeEEEeecCHHHHHHHHHhCCEEEECC
Confidence 689999999999999999999998853 489999999987542 111 18999999999999
Q ss_pred CcccchHHHHHHcCCCc-cccC
Q 004879 692 IFNICNLYIKLGQGGDL-TVNN 712 (725)
Q Consensus 692 ~~EpfGLv~LEAMg~~~-~V~~ 712 (725)
.+|+||++++|||+++. ||+.
T Consensus 83 ~~e~~~~~~~Eama~G~vPvi~ 104 (166)
T 3qhp_A 83 NVESEAIACLEAISVGIVPVIA 104 (166)
T ss_dssp CSCCCCHHHHHHHHTTCCEEEE
T ss_pred cccCccHHHHHHHhcCCCcEEe
Confidence 99999999999998886 7765
No 31
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.10 E-value=1.3e-10 Score=111.89 Aligned_cols=80 Identities=10% Similarity=0.029 Sum_probs=68.6
Q ss_pred CCCCEEEEeecCcCCCCHHHHHHHHHHhhcCCcEEEEEcCCCccc-c----c--H------------------HHHHHhc
Q 004879 630 ARKPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPVPH-I----Q--V------------------YPILLSS 684 (725)
Q Consensus 630 ~~~plV~fVGRL~~qKGvdlLieA~~~L~~~~iqLVIvG~Gp~~~-l----e--~------------------~~iyAaA 684 (725)
.++++|+|+||+.+.||++.+++|+..+ .+++|+|+|.|+... + . . ..+|+.|
T Consensus 21 ~~~~~i~~~G~~~~~Kg~~~li~a~~~l--~~~~l~i~G~~~~~~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~a 98 (177)
T 2f9f_A 21 CYGDFWLSVNRIYPEKRIELQLEVFKKL--QDEKLYIVGWFSKGDHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSRC 98 (177)
T ss_dssp CCCSCEEEECCSSGGGTHHHHHHHHHHC--TTSCEEEEBCCCTTSTHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHHC
T ss_pred CCCCEEEEEeccccccCHHHHHHHHHhC--CCcEEEEEecCccHHHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHhC
Confidence 3678999999999999999999999987 579999999987531 1 1 1 1899999
Q ss_pred CeEEEcCCcccchHHHHHHcCCCcccc
Q 004879 685 FSFLRKHIFNICNLYIKLGQGGDLTVN 711 (725)
Q Consensus 685 DIfVlPS~~EpfGLv~LEAMg~~~~V~ 711 (725)
|++|+||.+|+||++++|||+++.||+
T Consensus 99 di~v~ps~~e~~~~~~~Eama~G~PvI 125 (177)
T 2f9f_A 99 KGLLCTAKDEDFGLTPIEAMASGKPVI 125 (177)
T ss_dssp SEEEECCSSCCSCHHHHHHHHTTCCEE
T ss_pred CEEEeCCCcCCCChHHHHHHHcCCcEE
Confidence 999999999999999999997777654
No 32
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.02 E-value=2.6e-09 Score=114.75 Aligned_cols=74 Identities=9% Similarity=-0.030 Sum_probs=53.8
Q ss_pred CEEEEeecCcCCCCHHHHHHHHHHhhcCCcEEEEEcCCCc-c-ccc-------------HHHHHHhcCeEEEcCCcccch
Q 004879 633 PLVGCITRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPV-P-HIQ-------------VYPILLSSFSFLRKHIFNICN 697 (725)
Q Consensus 633 plV~fVGRL~~qKGvdlLieA~~~L~~~~iqLVIvG~Gp~-~-~le-------------~~~iyAaADIfVlPS~~EpfG 697 (725)
.++++.|++. .|+.+.+..++..+.+.+.++++++++.. . .++ -..+|+.||++|.+|- +
T Consensus 244 ~vlv~~G~~~-~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~l~~~~~~v~~~~~~~~~~~l~~ad~~v~~~g----~ 318 (412)
T 3otg_A 244 LVYLTLGTSS-GGTVEVLRAAIDGLAGLDADVLVASGPSLDVSGLGEVPANVRLESWVPQAALLPHVDLVVHHGG----S 318 (412)
T ss_dssp EEEEECTTTT-CSCHHHHHHHHHHHHTSSSEEEEECCSSCCCTTCCCCCTTEEEESCCCHHHHGGGCSEEEESCC----H
T ss_pred EEEEEcCCCC-cCcHHHHHHHHHHHHcCCCEEEEEECCCCChhhhccCCCcEEEeCCCCHHHHHhcCcEEEECCc----h
Confidence 4567789986 88888888888877666888888765432 2 111 1289999999998873 3
Q ss_pred HHHHHHcCCCcccc
Q 004879 698 LYIKLGQGGDLTVN 711 (725)
Q Consensus 698 Lv~LEAMg~~~~V~ 711 (725)
.|++|||.++.||+
T Consensus 319 ~t~~Ea~a~G~P~v 332 (412)
T 3otg_A 319 GTTLGALGAGVPQL 332 (412)
T ss_dssp HHHHHHHHHTCCEE
T ss_pred HHHHHHHHhCCCEE
Confidence 79999996555543
No 33
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=98.89 E-value=6.5e-09 Score=113.54 Aligned_cols=205 Identities=12% Similarity=0.057 Sum_probs=120.1
Q ss_pred HHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCccccccc
Q 004879 451 ALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDN 530 (725)
Q Consensus 451 vlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~ 530 (725)
+.+++++ .+||+||+|+..+..++...... ..++|+++..++... +.+. . .
T Consensus 103 l~~~l~~--~kPDvVi~~g~~~~~~~~~~aa~-----~~~IPv~h~~ag~rs-~~~~-~-----~--------------- 153 (396)
T 3dzc_A 103 MQQVLSS--EQPDVVLVHGDTATTFAASLAAY-----YQQIPVGHVEAGLRT-GNIY-S-----P--------------- 153 (396)
T ss_dssp HHHHHHH--HCCSEEEEETTSHHHHHHHHHHH-----TTTCCEEEETCCCCC-SCTT-S-----S---------------
T ss_pred HHHHHHh--cCCCEEEEECCchhHHHHHHHHH-----HhCCCEEEEECCccc-cccc-c-----C---------------
Confidence 3445553 58999999975544222222222 258998755443311 0000 0 0
Q ss_pred ccccchhhhhhh-hhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeC-CccCCCCCCCCcchhhhccCccc
Q 004879 531 SAHDRINPLKGA-IVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILN-GIDTDAWNPATDTFLKVQYNAND 608 (725)
Q Consensus 531 ~~~~~in~~k~a-i~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpN-GID~~~f~P~~d~~l~~~ys~~d 608 (725)
+.. ...+.. -..+|.++++|+..++.+... | .++.++.++.| ++|...+.+..
T Consensus 154 -~~~--~~~r~~~~~~a~~~~~~se~~~~~l~~~----G------~~~~ki~vvGn~~~d~~~~~~~~------------ 208 (396)
T 3dzc_A 154 -WPE--EGNRKLTAALTQYHFAPTDTSRANLLQE----N------YNAENIFVTGNTVIDALLAVREK------------ 208 (396)
T ss_dssp -TTH--HHHHHHHHHTCSEEEESSHHHHHHHHHT----T------CCGGGEEECCCHHHHHHHHHHHH------------
T ss_pred -CcH--HHHHHHHHHhcCEEECCCHHHHHHHHHc----C------CCcCcEEEECCcHHHHHHHhhhh------------
Confidence 001 112332 346899999999888877652 2 24578999998 45543221100
Q ss_pred ccchhhhHHHHHHHcC-CCCCCCCCCEE-EEeecCc-CCCCHHHHHHHHHHhhc--CCcEEEEE-cCCCc-c-cccH---
Q 004879 609 LQGKAENKESIRKHLG-LSSADARKPLV-GCITRLV-PQKGVHLIRHAIYRTLE--LGGQFILL-GSSPV-P-HIQV--- 677 (725)
Q Consensus 609 ~~gK~~~K~aLRk~lG-L~~~d~~~plV-~fVGRL~-~qKGvdlLieA~~~L~~--~~iqLVIv-G~Gp~-~-~le~--- 677 (725)
.......+..+++++| +++ +.+++ ++.+|.. ..||+..+++|+..+.+ ++++|++. |.+|. . .+++
T Consensus 209 ~~~~~~~~~~~r~~lg~l~~---~~~~vlv~~hR~~~~~~~~~~ll~A~~~l~~~~~~~~~v~~~g~~~~~~~~l~~~~~ 285 (396)
T 3dzc_A 209 IHTDMDLQATLESQFPMLDA---SKKLILVTGHRRESFGGGFERICQALITTAEQHPECQILYPVHLNPNVREPVNKLLK 285 (396)
T ss_dssp HHHCHHHHHHHHHTCTTCCT---TSEEEEEECSCBCCCTTHHHHHHHHHHHHHHHCTTEEEEEECCBCHHHHHHHHHHTT
T ss_pred cccchhhHHHHHHHhCccCC---CCCEEEEEECCcccchhHHHHHHHHHHHHHHhCCCceEEEEeCCChHHHHHHHHHHc
Confidence 0000011467889999 452 34544 4566754 45889999999999875 47899885 65431 1 1110
Q ss_pred ----------------HHHHHhcCeEEEcCCcccchHHHHHHcCCCcccc--CCCCCc
Q 004879 678 ----------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVN--NNCEPW 717 (725)
Q Consensus 678 ----------------~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V~--~~~~G~ 717 (725)
..+|++||++|.+| + |++ +|||.++.||+ .+.+|+
T Consensus 286 ~~~~v~~~~~lg~~~~~~l~~~ad~vv~~S---G-g~~-~EA~a~G~PvV~~~~~~~~ 338 (396)
T 3dzc_A 286 GVSNIVLIEPQQYLPFVYLMDRAHIILTDS---G-GIQ-EEAPSLGKPVLVMRETTER 338 (396)
T ss_dssp TCTTEEEECCCCHHHHHHHHHHCSEEEESC---S-GGG-TTGGGGTCCEEECCSSCSC
T ss_pred CCCCEEEeCCCCHHHHHHHHHhcCEEEECC---c-cHH-HHHHHcCCCEEEccCCCcc
Confidence 18999999999999 3 544 89997666654 456665
No 34
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=98.89 E-value=1.5e-08 Score=111.13 Aligned_cols=136 Identities=11% Similarity=0.081 Sum_probs=87.5
Q ss_pred hccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeC-CccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHc
Q 004879 545 FSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILN-GIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHL 623 (725)
Q Consensus 545 ~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpN-GID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~l 623 (725)
.+|.+++.|+..++.+... | .++.+++++.| |+|...+.+.. ..+...++++
T Consensus 169 ~a~~~~~~se~~~~~l~~~----G------i~~~~i~vvGn~~~D~~~~~~~~-----------------~~~~~~~~~l 221 (403)
T 3ot5_A 169 MADIHFSPTKQAKENLLAE----G------KDPATIFVTGNTAIDALKTTVQK-----------------DYHHPILENL 221 (403)
T ss_dssp HCSEEEESSHHHHHHHHHT----T------CCGGGEEECCCHHHHHHHHHSCT-----------------TCCCHHHHSC
T ss_pred hcCEEECCCHHHHHHHHHc----C------CCcccEEEeCCchHHHHHhhhhh-----------------hcchHHHHhc
Confidence 4799999999888887652 2 24578999988 56754332210 0011334444
Q ss_pred CCCCCCCCCCEEEEeecCcC-CCCHHHHHHHHHHhhc--CCcEEEEE-cCCCc-c-cccH-------------------H
Q 004879 624 GLSSADARKPLVGCITRLVP-QKGVHLIRHAIYRTLE--LGGQFILL-GSSPV-P-HIQV-------------------Y 678 (725)
Q Consensus 624 GL~~~d~~~plV~fVGRL~~-qKGvdlLieA~~~L~~--~~iqLVIv-G~Gp~-~-~le~-------------------~ 678 (725)
++ +..++++.||... .||+..+++|+..+.+ .+++|++. |.++. + .+++ .
T Consensus 222 --~~---~~~vlv~~~r~~~~~~~l~~ll~a~~~l~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~v~l~~~l~~~~~~ 296 (403)
T 3ot5_A 222 --GD---NRLILMTAHRRENLGEPMQGMFEAVREIVESREDTELVYPMHLNPAVREKAMAILGGHERIHLIEPLDAIDFH 296 (403)
T ss_dssp --TT---CEEEEECCCCHHHHTTHHHHHHHHHHHHHHHCTTEEEEEECCSCHHHHHHHHHHHTTCTTEEEECCCCHHHHH
T ss_pred --cC---CCEEEEEeCcccccCcHHHHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHhCCCCCEEEeCCCCHHHHH
Confidence 31 2245566788644 4789999999998875 47899987 54431 1 1111 1
Q ss_pred HHHHhcCeEEEcCCcccchHHHHHHcCCCcccc--CCCCCc
Q 004879 679 PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVN--NNCEPW 717 (725)
Q Consensus 679 ~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V~--~~~~G~ 717 (725)
.+|+.||++|.+| |-+++|||.++.||+ .+.+++
T Consensus 297 ~l~~~ad~vv~~S-----Gg~~~EA~a~g~PvV~~~~~~~~ 332 (403)
T 3ot5_A 297 NFLRKSYLVFTDS-----GGVQEEAPGMGVPVLVLRDTTER 332 (403)
T ss_dssp HHHHHEEEEEECC-----HHHHHHGGGTTCCEEECCSSCSC
T ss_pred HHHHhcCEEEECC-----ccHHHHHHHhCCCEEEecCCCcc
Confidence 8999999999998 444599997777755 344554
No 35
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=98.75 E-value=1.6e-08 Score=108.66 Aligned_cols=73 Identities=10% Similarity=0.041 Sum_probs=41.1
Q ss_pred CCEEEEeecCcCCC----------CHHHHHHHHHHhhcCCcEEEEEcCCCccc-c-------------cHHHHHHhcCeE
Q 004879 632 KPLVGCITRLVPQK----------GVHLIRHAIYRTLELGGQFILLGSSPVPH-I-------------QVYPILLSSFSF 687 (725)
Q Consensus 632 ~plV~fVGRL~~qK----------GvdlLieA~~~L~~~~iqLVIvG~Gp~~~-l-------------e~~~iyAaADIf 687 (725)
.++++++|++...| .+..+++|+.. .+++++++|+++... + ....+++.||++
T Consensus 228 ~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~---~~~~~v~~~~~~~~~~l~~~~~~v~~~~~~~~~~ll~~ad~~ 304 (398)
T 4fzr_A 228 PRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPK---LGFEVVVAVSDKLAQTLQPLPEGVLAAGQFPLSAIMPACDVV 304 (398)
T ss_dssp CEEECC----------------CCSHHHHHHHGGG---GTCEEEECCCC--------CCTTEEEESCCCHHHHGGGCSEE
T ss_pred CEEEEEccCcccccccccccchHHHHHHHHHHHHh---CCCEEEEEeCCcchhhhccCCCcEEEeCcCCHHHHHhhCCEE
Confidence 35667789997655 34555555543 478999988765321 1 112899999999
Q ss_pred EEcCCcccchHHHHHHcCCCcccc
Q 004879 688 LRKHIFNICNLYIKLGQGGDLTVN 711 (725)
Q Consensus 688 VlPS~~EpfGLv~LEAMg~~~~V~ 711 (725)
|..+ -+.|++|||.++.|++
T Consensus 305 v~~g----G~~t~~Ea~~~G~P~v 324 (398)
T 4fzr_A 305 VHHG----GHGTTLTCLSEGVPQV 324 (398)
T ss_dssp EECC----CHHHHHHHHHTTCCEE
T ss_pred EecC----CHHHHHHHHHhCCCEE
Confidence 9644 4689999996665543
No 36
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=98.74 E-value=2.7e-07 Score=99.42 Aligned_cols=75 Identities=11% Similarity=-0.045 Sum_probs=50.9
Q ss_pred CCC-EEEEeecCcCCCCHHHHHHHHHHhhc-CCcEEEE-EcCCCcccccH------------------HHHHHhcCeEEE
Q 004879 631 RKP-LVGCITRLVPQKGVHLIRHAIYRTLE-LGGQFIL-LGSSPVPHIQV------------------YPILLSSFSFLR 689 (725)
Q Consensus 631 ~~p-lV~fVGRL~~qKGvdlLieA~~~L~~-~~iqLVI-vG~Gp~~~le~------------------~~iyAaADIfVl 689 (725)
+.+ ++++.|++...+..+.+.+|+..+.. .+.+++. +|.+......+ ..+|++||++|.
T Consensus 179 ~~~~ilv~gGs~g~~~~~~~~~~al~~l~~~~~~~vi~~~G~~~~~~~~~~~~~~~~~~~v~~f~~dm~~~l~~aDlvI~ 258 (365)
T 3s2u_A 179 RRVNLLVLGGSLGAEPLNKLLPEALAQVPLEIRPAIRHQAGRQHAEITAERYRTVAVEADVAPFISDMAAAYAWADLVIC 258 (365)
T ss_dssp SCCEEEECCTTTTCSHHHHHHHHHHHTSCTTTCCEEEEECCTTTHHHHHHHHHHTTCCCEEESCCSCHHHHHHHCSEEEE
T ss_pred CCcEEEEECCcCCccccchhhHHHHHhcccccceEEEEecCccccccccceecccccccccccchhhhhhhhccceEEEe
Confidence 345 45556889888888899999988764 3566654 45443221111 189999999997
Q ss_pred cCCcccchHHHHHHcCCCcc
Q 004879 690 KHIFNICNLYIKLGQGGDLT 709 (725)
Q Consensus 690 PS~~EpfGLv~LEAMg~~~~ 709 (725)
.| -+.|+.|+|.++.|
T Consensus 259 ra----G~~Tv~E~~a~G~P 274 (365)
T 3s2u_A 259 RA----GALTVSELTAAGLP 274 (365)
T ss_dssp CC----CHHHHHHHHHHTCC
T ss_pred cC----CcchHHHHHHhCCC
Confidence 65 27899999855544
No 37
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=98.74 E-value=2.5e-07 Score=100.38 Aligned_cols=75 Identities=13% Similarity=0.091 Sum_probs=49.1
Q ss_pred CCEEEEeecCcCCCCHHHHHHHHHHhhc-CCcEEE-EEcCCCcc-cc-------------cHHHHHHhcCeEEEcCCccc
Q 004879 632 KPLVGCITRLVPQKGVHLIRHAIYRTLE-LGGQFI-LLGSSPVP-HI-------------QVYPILLSSFSFLRKHIFNI 695 (725)
Q Consensus 632 ~plV~fVGRL~~qKGvdlLieA~~~L~~-~~iqLV-IvG~Gp~~-~l-------------e~~~iyAaADIfVlPS~~Ep 695 (725)
.++++++|++. .++.+.+..++..+.+ .+++++ ++|.|+.. .+ ....+|+.||++|.+|-
T Consensus 233 ~~v~v~~Gs~~-~~~~~~~~~~~~~l~~~~~~~~~~~~G~~~~~~~l~~~~~~v~~~~~~~~~~~l~~ad~~v~~~G--- 308 (430)
T 2iyf_A 233 KVVLVSLGSAF-TKQPAFYRECVRAFGNLPGWHLVLQIGRKVTPAELGELPDNVEVHDWVPQLAILRQADLFVTHAG--- 308 (430)
T ss_dssp EEEEEECTTTC-C-CHHHHHHHHHHHTTCTTEEEEEECC---CGGGGCSCCTTEEEESSCCHHHHHTTCSEEEECCC---
T ss_pred CeEEEEcCCCC-CCcHHHHHHHHHHHhcCCCeEEEEEeCCCCChHHhccCCCCeEEEecCCHHHHhhccCEEEECCC---
Confidence 35778899998 6676666666655544 378884 67887532 11 12289999999999763
Q ss_pred chHHHHHHcCCCcccc
Q 004879 696 CNLYIKLGQGGDLTVN 711 (725)
Q Consensus 696 fGLv~LEAMg~~~~V~ 711 (725)
+.|.+|||.++.|++
T Consensus 309 -~~t~~Ea~~~G~P~i 323 (430)
T 2iyf_A 309 -AGGSQEGLATATPMI 323 (430)
T ss_dssp -HHHHHHHHHTTCCEE
T ss_pred -ccHHHHHHHhCCCEE
Confidence 379999996666643
No 38
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=98.65 E-value=1.5e-06 Score=92.56 Aligned_cols=74 Identities=8% Similarity=0.066 Sum_probs=45.9
Q ss_pred CCEEEEeecCcCCCCHHHHHHHHHHhhcCCcEEEE-EcCCCcc-cc-------------cHHHHHHhcCeEEEcCCcccc
Q 004879 632 KPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFIL-LGSSPVP-HI-------------QVYPILLSSFSFLRKHIFNIC 696 (725)
Q Consensus 632 ~plV~fVGRL~~qKGvdlLieA~~~L~~~~iqLVI-vG~Gp~~-~l-------------e~~~iyAaADIfVlPS~~Epf 696 (725)
..++++.|+....+. +.+...+..+.+.+.++++ +|.++.. .+ ....+++.||++|..|-
T Consensus 232 ~~v~v~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~ll~~ad~~v~~~G---- 306 (402)
T 3ia7_A 232 PVLLVSLGNQFNEHP-EFFRACAQAFADTPWHVVMAIGGFLDPAVLGPLPPNVEAHQWIPFHSVLAHARACLTHGT---- 306 (402)
T ss_dssp CEEEEECCSCSSCCH-HHHHHHHHHHTTSSCEEEEECCTTSCGGGGCSCCTTEEEESCCCHHHHHTTEEEEEECCC----
T ss_pred CEEEEECCCCCcchH-HHHHHHHHHHhcCCcEEEEEeCCcCChhhhCCCCCcEEEecCCCHHHHHhhCCEEEECCC----
Confidence 346677899876652 3344444333334577776 5665322 11 12289999999998864
Q ss_pred hHHHHHHcCCCccc
Q 004879 697 NLYIKLGQGGDLTV 710 (725)
Q Consensus 697 GLv~LEAMg~~~~V 710 (725)
+.|++|||..+.|+
T Consensus 307 ~~t~~Ea~~~G~P~ 320 (402)
T 3ia7_A 307 TGAVLEAFAAGVPL 320 (402)
T ss_dssp HHHHHHHHHTTCCE
T ss_pred HHHHHHHHHhCCCE
Confidence 26889999655554
No 39
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=98.64 E-value=7.3e-08 Score=103.76 Aligned_cols=75 Identities=9% Similarity=0.051 Sum_probs=51.8
Q ss_pred CCEEEEeecCcCC-CCHHHHHHHHHHhhcCCcEEEEEcCCCccc-cc-------------HHHHHHhcCeEEEcCCcccc
Q 004879 632 KPLVGCITRLVPQ-KGVHLIRHAIYRTLELGGQFILLGSSPVPH-IQ-------------VYPILLSSFSFLRKHIFNIC 696 (725)
Q Consensus 632 ~plV~fVGRL~~q-KGvdlLieA~~~L~~~~iqLVIvG~Gp~~~-le-------------~~~iyAaADIfVlPS~~Epf 696 (725)
.++++++|++... +|.+.+..++..+.+.+++++++|+++... +. ...+++.||++|..+ -
T Consensus 233 ~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~g~~~~~~l~~~~~~v~~~~~~~~~~ll~~ad~~v~~~----G 308 (398)
T 3oti_A 233 PEVAITMGTIELQAFGIGAVEPIIAAAGEVDADFVLALGDLDISPLGTLPRNVRAVGWTPLHTLLRTCTAVVHHG----G 308 (398)
T ss_dssp CEEEECCTTTHHHHHCGGGHHHHHHHHHTSSSEEEEECTTSCCGGGCSCCTTEEEESSCCHHHHHTTCSEEEECC----C
T ss_pred CEEEEEcCCCccccCcHHHHHHHHHHHHcCCCEEEEEECCcChhhhccCCCcEEEEccCCHHHHHhhCCEEEECC----C
Confidence 3566778999765 466666666666655689999998765321 11 128999999999653 4
Q ss_pred hHHHHHHcCCCccc
Q 004879 697 NLYIKLGQGGDLTV 710 (725)
Q Consensus 697 GLv~LEAMg~~~~V 710 (725)
+.|++|||.++.|+
T Consensus 309 ~~t~~Eal~~G~P~ 322 (398)
T 3oti_A 309 GGTVMTAIDAGIPQ 322 (398)
T ss_dssp HHHHHHHHHHTCCE
T ss_pred HHHHHHHHHhCCCE
Confidence 46899999555443
No 40
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=98.55 E-value=1.8e-06 Score=101.60 Aligned_cols=239 Identities=22% Similarity=0.169 Sum_probs=146.2
Q ss_pred CceEEEECCCchhhHHHHHHHhhccC-CC--------CCCcEEEEeeCCcccC--CCChhhhhh-c--------------
Q 004879 461 QPDIIHCHDWQTAFVAPLYWDLYVPK-GL--------NSARVCFTCHNFEYQG--TAPAKELAS-C-------------- 514 (725)
Q Consensus 461 kPDIIH~Hdw~sa~vapl~~~~ya~~-gl--------~~ipiV~TiHn~~~qg--~~p~~~l~~-~-------------- 514 (725)
++.+||+++-|++++.|-+...+... ++ ...-++||.|+.-..+ .||.+.+.. +
T Consensus 359 ~~~~ihlNDtHpalai~ELmR~L~d~~gl~wd~Aw~iv~~t~~yTnHT~lpealE~wpv~l~~~lLpr~~~II~ein~~f 438 (879)
T 1ygp_A 359 DQVAIQLNDTHPTLAIVELQRVLVDLEKLDWHEAWDIVTKTFAYTNHTVMQEALEKWPRRLFGHLLPRHLEIIYDINWFF 438 (879)
T ss_dssp HHEEEEEESSTTTHHHHHHHHHHHHTTCCCHHHHHHHHHHHEEEEECCCSGGGSCEEEHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CceEEEccCCcHHHHHHHHHHHHhhhcCCCHHHHHHHHHHheeeecCcCchHhhccCCHHHHHHHCCcHHHHHHHHHHHH
Confidence 57899999999988766655432211 11 2346999999984322 233332211 0
Q ss_pred --------CCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCC-cEEEEeC
Q 004879 515 --------GLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSK-KFVGILN 585 (725)
Q Consensus 515 --------Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~-Kv~vIpN 585 (725)
+-+.+.+.++..+.+..-...++|-..+++.|..|..||.-+.+-+.+..+ ..+-...+. |+.-+.|
T Consensus 439 ~~~~~~~~~~d~~~~~~l~ii~~~~~~~~v~MA~LAi~~S~~vNGVs~LH~ev~k~~~f----~df~~l~P~~kf~n~TN 514 (879)
T 1ygp_A 439 LEDVAKKFPKDVDLLSRISIIEENSPERQIRMAFLAIVGSHKVNGVVELHSELIKTTIF----KDFIKFYGPSKFVNVTN 514 (879)
T ss_dssp HHHHHHHSTTCTHHHHHHCSEECCSSSCEEEHHHHHHHHEEEEEESSHHHHHHHHHTTT----HHHHHHHCGGGEEECCC
T ss_pred HHHHHHHcCCCHHHHHhcceeccCCCcceeehHHHHHHhcCceeEehHHHHHHHHHHHh----HHHHHhCCCCcccCcCC
Confidence 101111111111111101136888889999999999999887766544221 011112345 9999999
Q ss_pred CccCCCCC----CCCcchhhh-------ccC------------ccc-------ccchhhhHHH----HHHHc-CCCCCC-
Q 004879 586 GIDTDAWN----PATDTFLKV-------QYN------------AND-------LQGKAENKES----IRKHL-GLSSAD- 629 (725)
Q Consensus 586 GID~~~f~----P~~d~~l~~-------~ys------------~~d-------~~gK~~~K~a----LRk~l-GL~~~d- 629 (725)
||...+|- |.....+.. .+. ++| .+-|..+|.. ++++. |+. .+
T Consensus 515 GVt~rrWl~~~Np~L~~Li~~~iG~~~~~W~~d~~~L~~l~~~~~D~~f~~~l~~iK~~nK~~La~~i~~~~~g~~-ld~ 593 (879)
T 1ygp_A 515 GITPRRWLKQANPSLAKLISETLNDPTEEYLLDMAKLTQLEKYVEDKEFLKKWNQVKLNNKIRLVDLIKKENDGVD-IIN 593 (879)
T ss_dssp CBCHHHHTTTTCHHHHHHHHHHTTCTTCGGGTCGGGGGGGGGGGGCTHHHHHHHHHHHHHHHHHHHHHHHTTTTCC-CSC
T ss_pred CcCCchhhhhcCHHHHHHHHHhcCCChhhhhhCHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCcE-ecC
Confidence 99888884 431111111 111 122 2245555554 46677 865 45
Q ss_pred ----CCCCEEEEeecCcCCCCHHH-HHHHHHHhhc------------------CCcEEEEEcCCCccc------cc----
Q 004879 630 ----ARKPLVGCITRLVPQKGVHL-IRHAIYRTLE------------------LGGQFILLGSSPVPH------IQ---- 676 (725)
Q Consensus 630 ----~~~plV~fVGRL~~qKGvdl-LieA~~~L~~------------------~~iqLVIvG~Gp~~~------le---- 676 (725)
++...++++-|+..+|...+ +++.+.++.+ .+.+||+.|.....+ |+
T Consensus 594 ~~~~p~sLfdvq~KR~heYKRq~LniL~ii~ry~~Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~ 673 (879)
T 1ygp_A 594 REYLDDTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPGYYMAKLIIKLINC 673 (879)
T ss_dssp STTGGGCEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHSCCEEEEEECCCCTTCHHHHHHHHHHHH
T ss_pred CCCCCCeeeeeeeehhhHhHHHHHHHHHHHHHHHHHHhCccccCCCcccccCCCCeEEEEeccCCCCcHHHHHHHHHHHH
Confidence 67889999999999999999 7887765421 357889999753221 10
Q ss_pred ---------------------------HHHHHHhcCeEEEcCC--cccchHHHHHHc
Q 004879 677 ---------------------------VYPILLSSFSFLRKHI--FNICNLYIKLGQ 704 (725)
Q Consensus 677 ---------------------------~~~iyAaADIfVlPS~--~EpfGLv~LEAM 704 (725)
.+.++.+||+...-|. .|++|.+-|-+|
T Consensus 674 va~~iN~Dp~v~~~LKVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMKfa 730 (879)
T 1ygp_A 674 VADIVNNDESIEHLLKVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFV 730 (879)
T ss_dssp HHHHHTTCGGGTTSEEEEEETTCCHHHHHHHGGGCSEEEECCCTTCCSCCHHHHHHH
T ss_pred HHHHhccChhhCCceEEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCchhhHHH
Confidence 0189999999999887 799999999987
No 41
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=98.52 E-value=2.2e-07 Score=99.95 Aligned_cols=180 Identities=11% Similarity=-0.014 Sum_probs=106.7
Q ss_pred CCCceEEEECCCch--h-hHHHHHHHhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccc
Q 004879 459 GKQPDIIHCHDWQT--A-FVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDR 535 (725)
Q Consensus 459 ~~kPDIIH~Hdw~s--a-~vapl~~~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~ 535 (725)
-.++|+|+++.+.- . +.+++ ..... ..++|+|+.+|++.... . ... ...
T Consensus 72 ~~~~DvIi~q~P~~~~~~~~~~~-~~~lk---~~~~k~i~~ihDl~pl~-~----------~~~-------------~~~ 123 (339)
T 3rhz_A 72 LRHGDVVIFQTPTWNTTEFDEKL-MNKLK---LYDIKIVLFIHDVVPLM-F----------SGN-------------FYL 123 (339)
T ss_dssp CCTTCEEEEEECCSSCHHHHHHH-HHHHT---TSSCEEEEEESCCHHHH-C----------GGG-------------GGG
T ss_pred CCCCCEEEEeCCCcchhhHHHHH-HHHHH---hcCCEEEEEecccHHhh-C----------ccc-------------hhh
Confidence 35899999986542 2 22222 23222 13899999999984211 0 000 001
Q ss_pred hhhhhhhhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhh
Q 004879 536 INPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAEN 615 (725)
Q Consensus 536 in~~k~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~ 615 (725)
...++..++.||.|+++|+.+++.+... |. ...++ +++|+ |+...+. +
T Consensus 124 ~~~E~~~y~~aD~Ii~~S~~~~~~l~~~----G~------~~~ki--~~~~~----~~~~~~~--~-------------- 171 (339)
T 3rhz_A 124 MDRTIAYYNKADVVVAPSQKMIDKLRDF----GM------NVSKT--VVQGM----WDHPTQA--P-------------- 171 (339)
T ss_dssp HHHHHHHHTTCSEEEESCHHHHHHHHHT----TC------CCSEE--EECCS----CCCCCCC--C--------------
T ss_pred HHHHHHHHHHCCEEEECCHHHHHHHHHc----CC------CcCce--eecCC----CCccCcc--c--------------
Confidence 2256788999999999999999887652 22 23455 33332 3321100 0
Q ss_pred HHHHHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhcCCcEEEEEcCCCccccc---------HH---HHHHh
Q 004879 616 KESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPVPHIQ---------VY---PILLS 683 (725)
Q Consensus 616 K~aLRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~~~iqLVIvG~Gp~~~le---------~~---~iyAa 683 (725)
...+ .+.+.|+|+||++...++. .+ ..+++|+|+|+|+...+. .+ .+|+.
T Consensus 172 -------~~~~---~~~~~i~yaG~l~k~~~L~-------~l-~~~~~f~ivG~G~~~~l~nV~f~G~~~~~el~~~l~~ 233 (339)
T 3rhz_A 172 -------MFPA---GLKREIHFPGNPERFSFVK-------EW-KYDIPLKVYTWQNVELPQNVHKINYRPDEQLLMEMSQ 233 (339)
T ss_dssp -------CCCC---EEEEEEEECSCTTTCGGGG-------GC-CCSSCEEEEESCCCCCCTTEEEEECCCHHHHHHHHHT
T ss_pred -------cccc---CCCcEEEEeCCcchhhHHH-------hC-CCCCeEEEEeCCcccCcCCEEEeCCCCHHHHHHHHHh
Confidence 0011 1347899999999533221 12 358999999999865221 11 67888
Q ss_pred cCeEEEc-CCc------ccchHHHHHHcCCCccccCCCCC
Q 004879 684 SFSFLRK-HIF------NICNLYIKLGQGGDLTVNNNCEP 716 (725)
Q Consensus 684 ADIfVlP-S~~------EpfGLv~LEAMg~~~~V~~~~~G 716 (725)
+|+.+++ +.. ..+|.-..|+|+++.||+....|
T Consensus 234 ~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~~~ 273 (339)
T 3rhz_A 234 GGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQEGI 273 (339)
T ss_dssp EEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEETTC
T ss_pred CCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEccCh
Confidence 8988886 110 24578899999777776533333
No 42
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=98.41 E-value=7.9e-06 Score=87.89 Aligned_cols=74 Identities=7% Similarity=-0.055 Sum_probs=45.0
Q ss_pred CCEEEEeecCcCCCCHHHHHHHHHHhhcCCcEEEE-EcCCCcc-cc-------------cHHHHHHhcCeEEEcCCcccc
Q 004879 632 KPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFIL-LGSSPVP-HI-------------QVYPILLSSFSFLRKHIFNIC 696 (725)
Q Consensus 632 ~plV~fVGRL~~qKGvdlLieA~~~L~~~~iqLVI-vG~Gp~~-~l-------------e~~~iyAaADIfVlPS~~Epf 696 (725)
.+++++.|+.....+ ..+...+..+.+.++++++ +|.++.. .+ ....+++.||++|..+-
T Consensus 248 ~~v~v~~Gs~~~~~~-~~~~~~~~al~~~~~~~v~~~g~~~~~~~l~~~~~~v~~~~~~~~~~ll~~ad~~v~~~G---- 322 (415)
T 3rsc_A 248 PVVLVSLGTTFNDRP-GFFRDCARAFDGQPWHVVMTLGGQVDPAALGDLPPNVEAHRWVPHVKVLEQATVCVTHGG---- 322 (415)
T ss_dssp CEEEEECTTTSCCCH-HHHHHHHHHHTTSSCEEEEECTTTSCGGGGCCCCTTEEEESCCCHHHHHHHEEEEEESCC----
T ss_pred CEEEEECCCCCCChH-HHHHHHHHHHhcCCcEEEEEeCCCCChHHhcCCCCcEEEEecCCHHHHHhhCCEEEECCc----
Confidence 345667788865432 3333333333334588887 6765322 11 11289999999998763
Q ss_pred hHHHHHHcCCCccc
Q 004879 697 NLYIKLGQGGDLTV 710 (725)
Q Consensus 697 GLv~LEAMg~~~~V 710 (725)
+.|++|||..+.|+
T Consensus 323 ~~t~~Ea~~~G~P~ 336 (415)
T 3rsc_A 323 MGTLMEALYWGRPL 336 (415)
T ss_dssp HHHHHHHHHTTCCE
T ss_pred HHHHHHHHHhCCCE
Confidence 25889999555553
No 43
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=98.38 E-value=3e-07 Score=98.26 Aligned_cols=74 Identities=11% Similarity=0.021 Sum_probs=47.9
Q ss_pred CEEEEeecCcCCCCH-HHHHHHHHHhhcC-CcEEEEEcCCCccc-cc-------------HHHHHHhcCeEEEcCCcccc
Q 004879 633 PLVGCITRLVPQKGV-HLIRHAIYRTLEL-GGQFILLGSSPVPH-IQ-------------VYPILLSSFSFLRKHIFNIC 696 (725)
Q Consensus 633 plV~fVGRL~~qKGv-dlLieA~~~L~~~-~iqLVIvG~Gp~~~-le-------------~~~iyAaADIfVlPS~~Epf 696 (725)
+++++.|++...|+. ..+++++....+. +++++++|+++... ++ ...+++.||++|..+ -
T Consensus 220 ~vlv~~G~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~l~~~~~~v~~~~~~~~~~ll~~ad~~v~~~----G 295 (391)
T 3tsa_A 220 RVCICMGRMVLNATGPAPLLRAVAAATELPGVEAVIAVPPEHRALLTDLPDNARIAESVPLNLFLRTCELVICAG----G 295 (391)
T ss_dssp EEEEECCHHHHHHHCSHHHHHHHHHHHTSTTEEEEEECCGGGGGGCTTCCTTEEECCSCCGGGTGGGCSEEEECC----C
T ss_pred EEEEEcCCCCCcccchHHHHHHHHHhccCCCeEEEEEECCcchhhcccCCCCEEEeccCCHHHHHhhCCEEEeCC----C
Confidence 455667998775433 5555555444333 78999998765321 11 116789999999654 4
Q ss_pred hHHHHHHcCCCccc
Q 004879 697 NLYIKLGQGGDLTV 710 (725)
Q Consensus 697 GLv~LEAMg~~~~V 710 (725)
+.|++|||.++.|+
T Consensus 296 ~~t~~Ea~~~G~P~ 309 (391)
T 3tsa_A 296 SGTAFTATRLGIPQ 309 (391)
T ss_dssp HHHHHHHHHTTCCE
T ss_pred HHHHHHHHHhCCCE
Confidence 46899999665554
No 44
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=98.38 E-value=1.2e-06 Score=95.61 Aligned_cols=133 Identities=9% Similarity=0.027 Sum_probs=85.2
Q ss_pred hhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeC-CccCCCCCCCCcchhhhccCcccccchhhhHHHHHHH
Q 004879 544 VFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILN-GIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKH 622 (725)
Q Consensus 544 ~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpN-GID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~ 622 (725)
..+|.+++.|+..++.+... | .++.+++++.| ++|...+.+ ....+..++++
T Consensus 145 ~~a~~~~~~te~~~~~l~~~----G------~~~~~I~vtGnp~~D~~~~~~-----------------~~~~~~~~~~~ 197 (385)
T 4hwg_A 145 HISDVNITLTEHARRYLIAE----G------LPAELTFKSGSHMPEVLDRFM-----------------PKILKSDILDK 197 (385)
T ss_dssp HHCSEEEESSHHHHHHHHHT----T------CCGGGEEECCCSHHHHHHHHH-----------------HHHHHCCHHHH
T ss_pred hhhceeecCCHHHHHHHHHc----C------CCcCcEEEECCchHHHHHHhh-----------------hhcchhHHHHH
Confidence 35789999999888877652 2 24568888887 455321110 01234467889
Q ss_pred cCCCCCCCCCCEEEEeecCc---CCCCHHHHHHHHHHhhcC-CcEEEEEcCCCcc----cc---c-------------H-
Q 004879 623 LGLSSADARKPLVGCITRLV---PQKGVHLIRHAIYRTLEL-GGQFILLGSSPVP----HI---Q-------------V- 677 (725)
Q Consensus 623 lGL~~~d~~~plV~fVGRL~---~qKGvdlLieA~~~L~~~-~iqLVIvG~Gp~~----~l---e-------------~- 677 (725)
+|+++ +..+++..||.. ..|++..+++|+..+.+. ++++|+...+... .+ . .
T Consensus 198 lgl~~---~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~~~~vv~p~~p~~~~~l~~~~~~~~~~~~v~l~~~lg~~ 274 (385)
T 4hwg_A 198 LSLTP---KQYFLISSHREENVDVKNNLKELLNSLQMLIKEYNFLIIFSTHPRTKKRLEDLEGFKELGDKIRFLPAFSFT 274 (385)
T ss_dssp TTCCT---TSEEEEEECCC-----CHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHTSGGGGGTGGGEEECCCCCHH
T ss_pred cCCCc---CCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHHHhcCCCCEEEEcCCCHH
Confidence 99973 334555667753 457899999999988653 7888775431110 11 0 0
Q ss_pred --HHHHHhcCeEEEcCCcccchHHHHHHcCCCcccc
Q 004879 678 --YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVN 711 (725)
Q Consensus 678 --~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V~ 711 (725)
..+|+.||+++.+| |.++.||+.++.||+
T Consensus 275 ~~~~l~~~adlvvt~S-----Ggv~~EA~alG~Pvv 305 (385)
T 4hwg_A 275 DYVKLQMNAFCILSDS-----GTITEEASILNLPAL 305 (385)
T ss_dssp HHHHHHHHCSEEEECC-----TTHHHHHHHTTCCEE
T ss_pred HHHHHHHhCcEEEECC-----ccHHHHHHHcCCCEE
Confidence 17999999999888 557899996655543
No 45
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=98.02 E-value=8.9e-05 Score=78.93 Aligned_cols=72 Identities=7% Similarity=0.040 Sum_probs=49.9
Q ss_pred CCEEEEeecCcCC-------CCHHHHHHHHHHhhcCCcEEEEEcCCCcc-c---------c---cHHHHHHhcCeEEEcC
Q 004879 632 KPLVGCITRLVPQ-------KGVHLIRHAIYRTLELGGQFILLGSSPVP-H---------I---QVYPILLSSFSFLRKH 691 (725)
Q Consensus 632 ~plV~fVGRL~~q-------KGvdlLieA~~~L~~~~iqLVIvG~Gp~~-~---------l---e~~~iyAaADIfVlPS 691 (725)
.+++++.|++... +.+..+++|+..+ +.+++++++++.. . + ....+|+.||+||.++
T Consensus 211 ~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~---~~~~~~~~g~~~~~~l~~~~~~v~~~~~~~~~~l~~~d~~v~~~ 287 (384)
T 2p6p_A 211 QRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRW---DVELIVAAPDTVAEALRAEVPQARVGWTPLDVVAPTCDLLVHHA 287 (384)
T ss_dssp CEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTT---TCEEEEECCHHHHHHHHHHCTTSEEECCCHHHHGGGCSEEEECS
T ss_pred CEEEEECCCCCccccccccHHHHHHHHHHHhcC---CcEEEEEeCCCCHHhhCCCCCceEEcCCCHHHHHhhCCEEEeCC
Confidence 3577889999876 6677788887653 6888887543211 0 1 1237899999999974
Q ss_pred CcccchHHHHHHcCCCccc
Q 004879 692 IFNICNLYIKLGQGGDLTV 710 (725)
Q Consensus 692 ~~EpfGLv~LEAMg~~~~V 710 (725)
-+.|.+|||.++.|+
T Consensus 288 ----G~~t~~Ea~~~G~P~ 302 (384)
T 2p6p_A 288 ----GGVSTLTGLSAGVPQ 302 (384)
T ss_dssp ----CTTHHHHHHHTTCCE
T ss_pred ----cHHHHHHHHHhCCCE
Confidence 246899999655553
No 46
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=97.86 E-value=0.00014 Score=78.72 Aligned_cols=73 Identities=10% Similarity=-0.003 Sum_probs=48.7
Q ss_pred CCEEEEeecCc-CCCCHHHHHHHHHHhhcCCcEEEEEcCCCcc-c------------ccHHHHHHhcCeEEEcCCcccch
Q 004879 632 KPLVGCITRLV-PQKGVHLIRHAIYRTLELGGQFILLGSSPVP-H------------IQVYPILLSSFSFLRKHIFNICN 697 (725)
Q Consensus 632 ~plV~fVGRL~-~qKGvdlLieA~~~L~~~~iqLVIvG~Gp~~-~------------le~~~iyAaADIfVlPS~~EpfG 697 (725)
.++++..|++. +.+.+..+++|+..+ +.++|+.++++.. . .....++..||++|..+-+
T Consensus 222 ~~Vlv~~Gs~~~~~~~~~~~~~al~~~---~~~vv~~~g~~~~~~~~~~~~v~~~~~~~~~~ll~~~d~~v~~gG~---- 294 (404)
T 3h4t_A 222 PPVYVGFGSGPAPAEAARVAIEAVRAQ---GRRVVLSSGWAGLGRIDEGDDCLVVGEVNHQVLFGRVAAVVHHGGA---- 294 (404)
T ss_dssp CCEEECCTTSCCCTTHHHHHHHHHHHT---TCCEEEECTTTTCCCSSCCTTEEEESSCCHHHHGGGSSEEEECCCH----
T ss_pred CeEEEECCCCCCcHHHHHHHHHHHHhC---CCEEEEEeCCcccccccCCCCEEEecCCCHHHHHhhCcEEEECCcH----
Confidence 45667789988 777778888887764 5788776443211 0 1123789999999987632
Q ss_pred HHHHHHc--CCCcccc
Q 004879 698 LYIKLGQ--GGDLTVN 711 (725)
Q Consensus 698 Lv~LEAM--g~~~~V~ 711 (725)
.|..||+ |.|.+++
T Consensus 295 ~t~~Eal~~GvP~v~~ 310 (404)
T 3h4t_A 295 GTTTAVTRAGAPQVVV 310 (404)
T ss_dssp HHHHHHHHHTCCEEEC
T ss_pred HHHHHHHHcCCCEEEc
Confidence 5889998 4454443
No 47
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=97.54 E-value=0.0045 Score=66.76 Aligned_cols=74 Identities=12% Similarity=0.097 Sum_probs=46.0
Q ss_pred CCEEEEeecCcCCCCHHHHHHHHHHhhcCCcEEEE-EcCCCcc-cc-------------cHHHHHHhcCeEEEcCCcccc
Q 004879 632 KPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFIL-LGSSPVP-HI-------------QVYPILLSSFSFLRKHIFNIC 696 (725)
Q Consensus 632 ~plV~fVGRL~~qKGvdlLieA~~~L~~~~iqLVI-vG~Gp~~-~l-------------e~~~iyAaADIfVlPS~~Epf 696 (725)
..++++.|+.. .++.+.+..++..+.+.++++++ +|.+... .+ ....+|+.||++|..+-
T Consensus 256 ~~v~v~~Gs~~-~~~~~~~~~~~~al~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~d~~v~~~G---- 330 (424)
T 2iya_A 256 PVLLIALGSAF-TDHLDFYRTCLSAVDGLDWHVVLSVGRFVDPADLGEVPPNVEVHQWVPQLDILTKASAFITHAG---- 330 (424)
T ss_dssp CEEEEECCSSS-CCCHHHHHHHHHHHTTCSSEEEEECCTTSCGGGGCSCCTTEEEESSCCHHHHHTTCSEEEECCC----
T ss_pred CEEEEEcCCCC-cchHHHHHHHHHHHhcCCcEEEEEECCcCChHHhccCCCCeEEecCCCHHHHHhhCCEEEECCc----
Confidence 34566789887 44545555555444445788854 6865421 11 12289999999998532
Q ss_pred hHHHHHHcCCCccc
Q 004879 697 NLYIKLGQGGDLTV 710 (725)
Q Consensus 697 GLv~LEAMg~~~~V 710 (725)
+.|.+|||..+.|+
T Consensus 331 ~~t~~Ea~~~G~P~ 344 (424)
T 2iya_A 331 MGSTMEALSNAVPM 344 (424)
T ss_dssp HHHHHHHHHTTCCE
T ss_pred hhHHHHHHHcCCCE
Confidence 37999999555553
No 48
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=97.30 E-value=0.003 Score=67.11 Aligned_cols=73 Identities=5% Similarity=0.058 Sum_probs=44.4
Q ss_pred CEEEEeecCcCCC-CHHHHHHHHHHhhcCCcEEEEEcCCCccc----c----------cHHHHHHhcCeEEEcCCcccch
Q 004879 633 PLVGCITRLVPQK-GVHLIRHAIYRTLELGGQFILLGSSPVPH----I----------QVYPILLSSFSFLRKHIFNICN 697 (725)
Q Consensus 633 plV~fVGRL~~qK-GvdlLieA~~~L~~~~iqLVIvG~Gp~~~----l----------e~~~iyAaADIfVlPS~~EpfG 697 (725)
+++++.|++...+ +...+..++..+.+.+.++++.+.+.... + -...+|+.+|+||.-+ -.
T Consensus 239 ~v~vs~Gs~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~v~h~----G~ 314 (400)
T 4amg_A 239 RIAVTLGSIDALSGGIAKLAPLFSEVADVDAEFVLTLGGGDLALLGELPANVRVVEWIPLGALLETCDAIIHHG----GS 314 (400)
T ss_dssp EEEECCCSCC--CCSSSTTHHHHHHGGGSSSEEEEECCTTCCCCCCCCCTTEEEECCCCHHHHHTTCSEEEECC----CH
T ss_pred EEEEeCCcccccCccHHHHHHHHHHhhccCceEEEEecCccccccccCCCCEEEEeecCHHHHhhhhhheeccC----Cc
Confidence 3455568876544 34555666666656688888876543221 1 1238999999998643 34
Q ss_pred HHHHHHcCCCcc
Q 004879 698 LYIKLGQGGDLT 709 (725)
Q Consensus 698 Lv~LEAMg~~~~ 709 (725)
.|.+|||..+.|
T Consensus 315 ~s~~Eal~~GvP 326 (400)
T 4amg_A 315 GTLLTALAAGVP 326 (400)
T ss_dssp HHHHHHHHHTCC
T ss_pred cHHHHHHHhCCC
Confidence 689999944444
No 49
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.33 E-value=0.12 Score=63.46 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=10.8
Q ss_pred hhhhhhccchhHHHHHHHHhhhhhhhhh--------HHHHHHhhhhhHHhhHHHHHh
Q 004879 75 SLKTENLSLKNDIKVLKAELNSVKDADE--------RVVMLEMERSSLESSLKELES 123 (725)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 123 (725)
.+++.|..|.+.++.|...|.+..+.-. --..+++|.+.|+..+.+||.
T Consensus 918 ~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~ 974 (1080)
T 2dfs_A 918 RYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM 974 (1080)
T ss_dssp ---------------------------------CHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555554433211100 012345556666666666655
No 50
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.10 E-value=0.4 Score=64.60 Aligned_cols=127 Identities=14% Similarity=0.191 Sum_probs=80.0
Q ss_pred HhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhH
Q 004879 108 EMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESL 187 (725)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (725)
+++.+.++..-++.+.+-..+++|.++.-|. .-+-++++.++.-|+.|..+..++- ++=+++++++++|++.+
T Consensus 1979 ~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa----~Pkr~~l~~ae~~l~~~~~~L~~~~---~~L~~le~~l~~L~~~~ 2051 (3245)
T 3vkg_A 1979 RELQVQLDVRNKEIAVQKVKAYADLEKAEPT----GPLREEVEQLENAANELKLKQDEIV---ATITALEKSIATYKEEY 2051 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC----ChHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3344445555566666667777787777766 3466777777777777666655442 23356777777777776
Q ss_pred hhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHH---HHHHHHHHHHHHhhhhHHhhh
Q 004879 188 DEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQ---LYQESVKEFQDTLHSLKEESK 251 (725)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 251 (725)
+++.- |++ .+++++...+.+|+++...|.++-. +..+++++|+..++.|-+..-
T Consensus 2052 ~~~~~-----ek~-----~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD~L 2108 (3245)
T 3vkg_A 2052 ATLIR-----ETE-----QIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDVV 2108 (3245)
T ss_dssp HHHHH-----HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHH-----HHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHHHH
Confidence 65432 332 5566777888888888888877754 566778889888888776654
No 51
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.97 E-value=0.19 Score=61.84 Aligned_cols=29 Identities=21% Similarity=0.356 Sum_probs=2.6
Q ss_pred CcccchhhHhhhhhhhhhccchhHHHHHH
Q 004879 63 NSEIHSFSKELDSLKTENLSLKNDIKVLK 91 (725)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (725)
...|..|...++...+||..|++.++.++
T Consensus 927 E~kl~eLq~rL~~~e~~n~~L~~~~~~~~ 955 (1080)
T 2dfs_A 927 ENKIMQLQRKIDEQNKEYKSLLEKMNNLE 955 (1080)
T ss_dssp ------------------------CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45567778888888888888877765444
No 52
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=94.78 E-value=0.049 Score=63.00 Aligned_cols=87 Identities=14% Similarity=-0.065 Sum_probs=61.8
Q ss_pred HcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhc--CCcEEE--EEcCCC--cccc-cH-----------------
Q 004879 622 HLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFI--LLGSSP--VPHI-QV----------------- 677 (725)
Q Consensus 622 ~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~--~~iqLV--IvG~Gp--~~~l-e~----------------- 677 (725)
.+|++. +.+.+++++.+|. .|....+++++.++++ ++..++ ++|.++ ...+ ++
T Consensus 432 ~~~lp~-~~G~v~Fg~fn~~--~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~~~g~~~~~~~~~~~~GI~~Rv~F~g~~p 508 (631)
T 3q3e_A 432 DYLLRE-NPEVVNIGIASTT--MKLNPYFLEALKAIRDRAKVKVHFHFALGQSNGITHPYVERFIKSYLGDSATAHPHSP 508 (631)
T ss_dssp CCCCCS-CCSEEEEEEEECS--TTCCHHHHHHHHHHHHHCSSEEEEEEEESSCCGGGHHHHHHHHHHHHGGGEEEECCCC
T ss_pred cccCCc-CCCeEEEEECCcc--ccCCHHHHHHHHHHHHhCCCcEEEEEecCCCchhhHHHHHHHHHcCCCccEEEcCCCC
Confidence 356663 2235778888874 6889999999999886 344443 367432 2111 10
Q ss_pred --H--HHHHhcCeEEEcCCcccchHHHHHHcCCCccccC
Q 004879 678 --Y--PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNN 712 (725)
Q Consensus 678 --~--~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V~~ 712 (725)
+ ..|+.+|+++-|+.+.+ |+|.+|||.+|.||++
T Consensus 509 ~~e~la~y~~aDIfLDpfpy~G-gtTtlEALwmGVPVVT 546 (631)
T 3q3e_A 509 YHQYLRILHNCDMMVNPFPFGN-TNGIIDMVTLGLVGVC 546 (631)
T ss_dssp HHHHHHHHHTCSEEECCSSSCC-SHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHhcCcEEEeCCcccC-ChHHHHHHHcCCCEEe
Confidence 0 78999999999998855 9999999988888765
No 53
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=94.31 E-value=0.027 Score=52.95 Aligned_cols=71 Identities=13% Similarity=0.060 Sum_probs=49.9
Q ss_pred CCEEEEeecCc---CCCCHHHHHHHHHHhhcCCcEEEEEcCCCcc-c----------ccHHHHH--HhcCeEEEcCCccc
Q 004879 632 KPLVGCITRLV---PQKGVHLIRHAIYRTLELGGQFILLGSSPVP-H----------IQVYPIL--LSSFSFLRKHIFNI 695 (725)
Q Consensus 632 ~plV~fVGRL~---~qKGvdlLieA~~~L~~~~iqLVIvG~Gp~~-~----------le~~~iy--AaADIfVlPS~~Ep 695 (725)
.+++++.|++. +.|++..+++|+..+ +.+++++++++.. . .....++ ++||++|.. +
T Consensus 22 ~~vlv~~Gs~~~~~~~~~~~~~~~al~~~---~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~ad~~I~~----~ 94 (170)
T 2o6l_A 22 GVVVFSLGSMVSNMTEERANVIASALAQI---PQKVLWRFDGNKPDTLGLNTRLYKWIPQNDLLGHPKTRAFITH----G 94 (170)
T ss_dssp CEEEEECCSCCTTCCHHHHHHHHHHHTTS---SSEEEEECCSSCCTTCCTTEEEESSCCHHHHHTSTTEEEEEEC----C
T ss_pred CEEEEECCCCcccCCHHHHHHHHHHHHhC---CCeEEEEECCcCcccCCCcEEEecCCCHHHHhcCCCcCEEEEc----C
Confidence 45778899996 678888888888553 5788888765422 1 1123667 999999985 3
Q ss_pred chHHHHHHcCCCcc
Q 004879 696 CNLYIKLGQGGDLT 709 (725)
Q Consensus 696 fGLv~LEAMg~~~~ 709 (725)
-+.|++|||.++.|
T Consensus 95 G~~t~~Ea~~~G~P 108 (170)
T 2o6l_A 95 GANGIYEAIYHGIP 108 (170)
T ss_dssp CHHHHHHHHHHTCC
T ss_pred CccHHHHHHHcCCC
Confidence 46899999955444
No 54
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.30 E-value=1.2 Score=45.73 Aligned_cols=91 Identities=14% Similarity=0.155 Sum_probs=51.7
Q ss_pred hhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcc----ccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHH
Q 004879 94 LNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKL----STLKVECKDLYEKVENLQGLLAKATKQADQAISV 169 (725)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (725)
|....+.|.++..++.++..|-..|.+||.++...+..+.++ ..++.+.+.+=..++.++..+++..++-+++ ..
T Consensus 10 L~~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v-~~ 88 (256)
T 3na7_A 10 LIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEI-KS 88 (256)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-SS
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CC
Confidence 455667777777777777777777777776666655554432 3334444445555555555555555555432 22
Q ss_pred hhhhHHHHHHHHHHHH
Q 004879 170 LQQNQELRKKVDKLEE 185 (725)
Q Consensus 170 ~~~~~~~~~~~~~~~~ 185 (725)
-.+.+.|++.++.++.
T Consensus 89 ~kE~~aL~kEie~~~~ 104 (256)
T 3na7_A 89 ERELRSLNIEEDIAKE 104 (256)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344556666665553
No 55
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.28 E-value=3.3 Score=40.87 Aligned_cols=169 Identities=22% Similarity=0.272 Sum_probs=84.0
Q ss_pred chhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHH-HHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhH
Q 004879 67 HSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERV-VMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDL 145 (725)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (725)
.|..+|+.-.|+.-..+++.++.++.+|+++.+.-.-+ ..||+|-..+++..++|.++.. .|+.|+..|
T Consensus 6 ~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~----------~L~~E~e~~ 75 (189)
T 2v71_A 6 SSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQ----------RLKYEVEAL 75 (189)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH
Confidence 45678889999999999999999999999987654433 3455555556666666665543 456666677
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHH-HhhhhHHHHHHHHHHHHh---Hhh-hhhHHHhHHHHHhHHHHHHHHHHHHHHHhhh
Q 004879 146 YEKVENLQGLLAKATKQADQAIS-VLQQNQELRKKVDKLEES---LDE-ANIYKLSSEKMQQYNELMQQKMKLLEERLQR 220 (725)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (725)
-+|.+..+.-..++.+....=+. .-..++.|+.++-+||-. |+. .-+..-+-+.++.-+...=.|...||..++.
T Consensus 76 k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E 155 (189)
T 2v71_A 76 KEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE 155 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766665544443333222111 123344444444444321 111 1122223333333334444667777776653
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhHHhhhhh
Q 004879 221 SDEEIHSYVQLYQESVKEFQDTLHSLKEESKKR 253 (725)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (725)
...+ +..+.++.+.+.+|+.|....
T Consensus 156 ----Ke~l----~~~~QRLkdE~rDLk~El~v~ 180 (189)
T 2v71_A 156 ----KESL----LVSVQRLKDEARDLRQELAVR 180 (189)
T ss_dssp ----HHHH----HCCC-----------------
T ss_pred ----HHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 2222 334566667777777666543
No 56
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=91.99 E-value=1.2 Score=45.66 Aligned_cols=9 Identities=11% Similarity=0.320 Sum_probs=7.2
Q ss_pred HHHHHHHHH
Q 004879 227 SYVQLYQES 235 (725)
Q Consensus 227 ~~~~~~~~~ 235 (725)
.+|..|...
T Consensus 176 ~lL~~Yeri 184 (256)
T 3na7_A 176 KIYSFYERI 184 (256)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 678888887
No 57
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=91.90 E-value=0.22 Score=61.78 Aligned_cols=30 Identities=30% Similarity=0.436 Sum_probs=13.8
Q ss_pred hHHHHHHhhhhhHHhhHHHHHhhhhcchhh
Q 004879 102 ERVVMLEMERSSLESSLKELESKLSISQED 131 (725)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (725)
+.+..++++...|+..+++++.++...++.
T Consensus 913 ~~l~~l~~~~~~Le~~l~ele~elee~ee~ 942 (1184)
T 1i84_S 913 EMRVRLAAKKQELEEILHEMEARIEEEEER 942 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555554444444333
No 58
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=91.44 E-value=8.9 Score=37.05 Aligned_cols=133 Identities=19% Similarity=0.250 Sum_probs=80.4
Q ss_pred HHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHH
Q 004879 90 LKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISV 169 (725)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (725)
||++-..++..-+....+-+-.+.++.+++||..+... |+-.+..|-..+.+||+.|+.=...-.++-
T Consensus 22 Lk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~----------L~~~k~~Leke~~~LQa~L~qEr~~r~q~s-- 89 (168)
T 3o0z_A 22 LRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRI----------LENSKSQTDKDYYQLQAILEAERRDRGHDS-- 89 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 44444444444444444555556677777777766543 444556788889999999987554444432
Q ss_pred hhhhHHHHHHHHHHHHhHhhhh--hHHHhHHHHHhHHHHHHHHHHHHHHHhhhchH------HHHHHHHHHHHHHHHHHH
Q 004879 170 LQQNQELRKKVDKLEESLDEAN--IYKLSSEKMQQYNELMQQKMKLLEERLQRSDE------EIHSYVQLYQESVKEFQD 241 (725)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 241 (725)
+--.||+.++..|++-|+... ..+...+ +-.++.|+-.+|- .+++- +..++=+.|++.|.+-+.
T Consensus 90 -e~~~elq~ri~~L~~El~~~k~~~~k~~~e-----~r~L~Ekl~~lEK--e~a~~eid~~~eLKalQ~~~eqE~~~H~~ 161 (168)
T 3o0z_A 90 -EMIGDLQARITSLQEEVKHLKHNLEKVEGE-----RKEAQDMLNHSEK--EKNNLEIDLNYKLKSLQQRLEQEVNEHKV 161 (168)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223456666666666665432 2334444 3477888888887 33333 466777788888877776
Q ss_pred H
Q 004879 242 T 242 (725)
Q Consensus 242 ~ 242 (725)
|
T Consensus 162 T 162 (168)
T 3o0z_A 162 T 162 (168)
T ss_dssp -
T ss_pred H
Confidence 5
No 59
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.16 E-value=2.6 Score=47.54 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=26.8
Q ss_pred hhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 004879 170 LQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQES 235 (725)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (725)
...+|.++++++..++.+ +++++-...+++++....+++++..+|+...-++++++
T Consensus 522 ~~~~~~~~~~~~~~~~~~----------~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 522 LRETQARRTEADAKQKET----------EDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhcch----------hhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 345555555555444443 22233334444455555555555555555554444444
No 60
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=88.90 E-value=2.8 Score=37.15 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=36.3
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHhhhhhhH---HHHh-hhhHHHHHHHHHHHHhHhhh
Q 004879 134 KLSTLKVECKDLYEKVENLQGLLAKATKQADQA---ISVL-QQNQELRKKVDKLEESLDEA 190 (725)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~ 190 (725)
|+..|+.|.-++-++++.++.-+..+...+.++ +..| ..++-+...+|++++.|.++
T Consensus 10 Km~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 10 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888889999999998887776665554 2222 23444555555555555444
No 61
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=88.64 E-value=1.1 Score=50.24 Aligned_cols=75 Identities=21% Similarity=0.258 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHH---HHHHHHHH--------------HHHHHhhhchHHHHHHHHHHHH
Q 004879 172 QNQELRKKVDKLEESLDEANIYKLSSEKMQQYN---ELMQQKMK--------------LLEERLQRSDEEIHSYVQLYQE 234 (725)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 234 (725)
|++|+.+.|.+|...|++. .+.+++..+-+. +.++++++ .||.+++.++++++++|+.++.
T Consensus 58 qErDltkrINELKnqLEdl--sKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrv 135 (562)
T 3ghg_A 58 VNQDFTNRINKLKNSLFEY--QKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQL 135 (562)
T ss_dssp HHHHHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHH--HhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777766654 444433332221 22222222 5677777777788887766655
Q ss_pred HHHHHHHHhhhhHHhhhh
Q 004879 235 SVKEFQDTLHSLKEESKK 252 (725)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~ 252 (725)
+ |..|+++-.+.+|
T Consensus 136 L----QsnLedq~~kIQR 149 (562)
T 3ghg_A 136 L----QKNVRAQLVDMKR 149 (562)
T ss_dssp H----HHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHHH
Confidence 5 7778777777775
No 62
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.26 E-value=2.3 Score=48.07 Aligned_cols=45 Identities=27% Similarity=0.398 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhh
Q 004879 172 QNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQ 219 (725)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (725)
+.+.++++++++|.-+++..= --+.+++-+..++++++.+++.++
T Consensus 538 ~~~~~~~~~~~le~~~~~~~~---~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 538 ETEDLEQENIALEKQLDNKRA---KQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred chhhHHhhhHHHHHHHhhhhh---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334455666666655544321 112222334455666777766554
No 63
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=87.80 E-value=12 Score=50.94 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=22.4
Q ss_pred hhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhH
Q 004879 79 ENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSL 114 (725)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (725)
-...+.+..+.|+.=|....+|.+.|..|.+|-+.+
T Consensus 1911 K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~ 1946 (3245)
T 3vkg_A 1911 KRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQK 1946 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455556666666777777777777766665443
No 64
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=87.52 E-value=1.9 Score=39.80 Aligned_cols=53 Identities=30% Similarity=0.405 Sum_probs=34.9
Q ss_pred hhhhhhccchhHHHHHH----HHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 004879 75 SLKTENLSLKNDIKVLK----AELNSVKDADERVVMLEMERSSLESSLKELESKLSI 127 (725)
Q Consensus 75 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (725)
.|.+.|..|-.....|. ++-...++.+++...|.+.+..|++.|++|++++..
T Consensus 38 ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rlee 94 (129)
T 2fxo_A 38 ELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLED 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433 344455677888888888888899888888877654
No 65
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=87.25 E-value=0.73 Score=57.16 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=7.1
Q ss_pred hHHHHHHhhhhhHHhhHH
Q 004879 102 ERVVMLEMERSSLESSLK 119 (725)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~ 119 (725)
+.+..|++|...++..++
T Consensus 885 ~~l~~Le~e~~~l~~~L~ 902 (1184)
T 1i84_S 885 QKHTQLCEEKNLLQEKLQ 902 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444433333
No 66
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=86.77 E-value=5.7 Score=37.72 Aligned_cols=62 Identities=13% Similarity=0.183 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 004879 172 QNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESV 236 (725)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (725)
+...|+++++.|++.|++-+ =..+.++.-+.-++-.+..+|+++++...|+..+|+++-.-+
T Consensus 76 El~~l~~ki~dLeeel~eK~---K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk 137 (152)
T 3a7p_A 76 ELKSKEQEIRRLKEVIALKN---KNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKT 137 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888999988887643 122334445567888899999999999999999999886653
No 67
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=86.20 E-value=0.44 Score=51.61 Aligned_cols=71 Identities=6% Similarity=-0.107 Sum_probs=46.0
Q ss_pred CEEEEeecCcC-----CCCHHHHHHHHHHhhcCCcEEEEEcCCCcc-cc-------------cHHHHHHhcCeEEEcCCc
Q 004879 633 PLVGCITRLVP-----QKGVHLIRHAIYRTLELGGQFILLGSSPVP-HI-------------QVYPILLSSFSFLRKHIF 693 (725)
Q Consensus 633 plV~fVGRL~~-----qKGvdlLieA~~~L~~~~iqLVIvG~Gp~~-~l-------------e~~~iyAaADIfVlPS~~ 693 (725)
.++++.|++.. .|++..+++|+..+ +++++++++++.. .+ ....+|+.||++|..
T Consensus 269 ~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~---~~~~v~~~g~~~~~~l~~~~~~v~~~~~~~~~~ll~~ad~~V~~--- 342 (441)
T 2yjn_A 269 RVCLTLGISSRENSIGQVSIEELLGAVGDV---DAEIIATFDAQQLEGVANIPDNVRTVGFVPMHALLPTCAATVHH--- 342 (441)
T ss_dssp EEEEEC----------CCSTTTTHHHHHTS---SSEEEECCCTTTTSSCSSCCSSEEECCSCCHHHHGGGCSEEEEC---
T ss_pred EEEEECCCCcccccChHHHHHHHHHHHHcC---CCEEEEEECCcchhhhccCCCCEEEecCCCHHHHHhhCCEEEEC---
Confidence 46777899875 48888889988654 6888887654321 11 123789999999985
Q ss_pred ccchHHHHHHcCCCccc
Q 004879 694 NICNLYIKLGQGGDLTV 710 (725)
Q Consensus 694 EpfGLv~LEAMg~~~~V 710 (725)
+-+.|++|||.++.|+
T Consensus 343 -~G~~t~~Ea~~~G~P~ 358 (441)
T 2yjn_A 343 -GGPGSWHTAAIHGVPQ 358 (441)
T ss_dssp -CCHHHHHHHHHTTCCE
T ss_pred -CCHHHHHHHHHhCCCE
Confidence 3357999999555553
No 68
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=84.06 E-value=6 Score=34.86 Aligned_cols=89 Identities=19% Similarity=0.254 Sum_probs=54.1
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHH
Q 004879 134 KLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKL 213 (725)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (725)
|+..|+.|.-++-++++.++.-+..+...++++ -+.-..|++|+..++.-++.+.. -+.-.++++..
T Consensus 10 Km~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~---E~ei~sL~kKiq~lE~eld~~~e----------~l~~a~~kLe~ 76 (101)
T 3u59_A 10 KMQMLKLDKENAIDRAEQAEADKKQAEDRCKQL---EEEQQGLQKKLKGTEDEVEKYSE----------SVKEAQEKLEQ 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Confidence 566788888899999999999988877766664 23444566666655555543221 01122334444
Q ss_pred HHHHhhhchHHHHHHHHHHHHH
Q 004879 214 LEERLQRSDEEIHSYVQLYQES 235 (725)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~ 235 (725)
-+.....+..++.|+=+++|-.
T Consensus 77 ~ek~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 77 AEKKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666666544
No 69
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=82.50 E-value=2.3 Score=44.09 Aligned_cols=95 Identities=16% Similarity=0.156 Sum_probs=60.8
Q ss_pred hHHHHHHHcCCCCCCCCCC-EEEEeec-CcCCCCHH--HHHHHHHHhhcCCcEEEEEcCCCccc----c----c------
Q 004879 615 NKESIRKHLGLSSADARKP-LVGCITR-LVPQKGVH--LIRHAIYRTLELGGQFILLGSSPVPH----I----Q------ 676 (725)
Q Consensus 615 ~K~aLRk~lGL~~~d~~~p-lV~fVGR-L~~qKGvd--lLieA~~~L~~~~iqLVIvG~Gp~~~----l----e------ 676 (725)
.++.+++.+|++. +++ ++++.|. ..+.|.+. .+.+++..+.+.+.++++.|++.+.. + .
T Consensus 166 ~~~~~~~~~~~~~---~~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~~~~vvl~g~~~e~~~~~~i~~~~~~~~~~~ 242 (348)
T 1psw_A 166 EKSYTCNQFSLSS---ERPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAW 242 (348)
T ss_dssp HHHHHHHHTTCCS---SSCEEEEECCCTTCGGGSCCHHHHHHHHHHHHHTTCEEEECCCGGGHHHHHHHHTTSCHHHHTT
T ss_pred HHHHHHHHhCCCC---CCcEEEEECCCCccccCCCCHHHHHHHHHHHHHCCCeEEEEeChhhHHHHHHHHHhhhhccccc
Confidence 4456778888763 344 4455665 55667765 78888888776689999998654321 1 0
Q ss_pred ------------HHHHHHhcCeEEEcCCcccchHHHHHHcCCCccccCCCC
Q 004879 677 ------------VYPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNNCE 715 (725)
Q Consensus 677 ------------~~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V~~~~~ 715 (725)
-..+++.||++|.++ +-++...-|+|.+.+++-+.+
T Consensus 243 ~~~l~g~~sl~e~~ali~~a~l~I~~D---sg~~HlAaa~g~P~v~lfg~t 290 (348)
T 1psw_A 243 CRNLAGETQLDQAVILIAACKAIVTND---SGLMHVAAALNRPLVALYGPS 290 (348)
T ss_dssp EEECTTTSCHHHHHHHHHTSSEEEEES---SHHHHHHHHTTCCEEEEESSS
T ss_pred eEeccCcCCHHHHHHHHHhCCEEEecC---CHHHHHHHHcCCCEEEEECCC
Confidence 018999999999986 223334335577766654443
No 70
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=82.38 E-value=24 Score=33.63 Aligned_cols=16 Identities=38% Similarity=0.603 Sum_probs=9.6
Q ss_pred hhHHHHHHHHHHHHhH
Q 004879 172 QNQELRKKVDKLEESL 187 (725)
Q Consensus 172 ~~~~~~~~~~~~~~~~ 187 (725)
....+...|+.|-+||
T Consensus 80 ~~~~ie~ElEeLTasL 95 (154)
T 2ocy_A 80 EADKLNKEVEDLTASL 95 (154)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445566666666665
No 71
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=81.11 E-value=6.4 Score=36.28 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 004879 206 LMQQKMKLLEERLQRSDEEIHSYVQLYQESV 236 (725)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (725)
-.+.++..+|..|+....++..+++.||.++
T Consensus 81 ~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll 111 (131)
T 3tnu_A 81 QIQEMIGSVEEQLAQLRCEMEQQNQEYKILL 111 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999999999999999884
No 72
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=81.09 E-value=7.4 Score=35.73 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 004879 206 LMQQKMKLLEERLQRSDEEIHSYVQLYQESV 236 (725)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (725)
-.+.++..+|+.|+....++..+++.|+.++
T Consensus 79 ~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Ll 109 (129)
T 3tnu_B 79 DARNKLAELEEALQKAKQDMARLLREYQELM 109 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999999999999999884
No 73
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=79.35 E-value=1.3 Score=29.98 Aligned_cols=23 Identities=43% Similarity=0.501 Sum_probs=20.4
Q ss_pred HHHHhhhhhHHhhHHHHHhhhhc
Q 004879 105 VMLEMERSSLESSLKELESKLSI 127 (725)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~ 127 (725)
..|||.|+.|+|.|+.||+||.+
T Consensus 4 ealekkcaalesklqalekklea 26 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEA 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999865
No 74
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=79.30 E-value=8.6 Score=41.51 Aligned_cols=50 Identities=24% Similarity=0.341 Sum_probs=28.3
Q ss_pred HHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhh-hhHHHhHHHHHhHHHHHHHHHHHH
Q 004879 152 LQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEA-NIYKLSSEKMQQYNELMQQKMKLL 214 (725)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 214 (725)
||.+|++ |+++++..|++|...|++- .-++-......++-++++++++..
T Consensus 54 Lqg~Ldk-------------~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~ 104 (390)
T 1deq_A 54 MKGLIDE-------------VDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKA 104 (390)
T ss_pred HHHHHHH-------------hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Confidence 7777776 4477888888888777653 111112222334555666665543
No 75
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=77.01 E-value=7.7 Score=33.48 Aligned_cols=51 Identities=20% Similarity=0.267 Sum_probs=37.1
Q ss_pred hhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhh
Q 004879 73 LDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLS 126 (725)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (725)
...|.+.+..|-.....|-.+ .++.+++...|.+.+.-|++.+++|+.++.
T Consensus 37 rkele~~~~~l~~ek~~L~~q---l~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 37 KKELEEQNVTLLEQKNDLFGS---MKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444555555555555555 788899999999999999999999988874
No 76
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=76.72 E-value=3.4 Score=37.40 Aligned_cols=82 Identities=17% Similarity=0.278 Sum_probs=57.7
Q ss_pred hhHHHhHHHHHHHHHHHhhcccCcccchhhhhccCCCccchhcccCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhh
Q 004879 18 IHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSV 97 (725)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (725)
..++-|+-+++.+|..+.+... .++..+++|-.|++.|+.+|..|+..|..|-+.-++
T Consensus 10 ~~~~~L~~E~e~~k~K~~~~~~---------------------e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDD- 67 (111)
T 2v66_B 10 ADNQRLKYEVEALKEKLEHQYA---------------------QSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDD- 67 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH-
Confidence 3445566666666666655311 234567889999999999999999998888665443
Q ss_pred hhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchh
Q 004879 98 KDADERVVMLEMERSSLESSLKELESKLSISQE 130 (725)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (725)
||+..--.-+||.|+|+|+..|=+
T Consensus 68 ---------LER~~R~t~~SLeD~E~k~n~aiE 91 (111)
T 2v66_B 68 ---------LERAKRATIVSLEDFEQRLNQAIE 91 (111)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 444444577899999999987644
No 77
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=76.60 E-value=22 Score=32.41 Aligned_cols=59 Identities=20% Similarity=0.288 Sum_probs=42.6
Q ss_pred hhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHH
Q 004879 162 QADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHS 227 (725)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (725)
.|+.|...|.....++.+++...+-+++..=+++++. -.++.++...+-+++++.+|..
T Consensus 35 ~AE~A~~~L~~~~~m~~~i~ek~~~i~~~~~~~~yK~-------eY~~L~KkYk~~~~~Ld~eI~~ 93 (119)
T 2avr_X 35 QADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKS-------QYQELASKYEDALKKLEAEMEQ 93 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888999999999999999988888877777775 3344445555545555555544
No 78
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=76.58 E-value=39 Score=31.83 Aligned_cols=100 Identities=27% Similarity=0.275 Sum_probs=65.6
Q ss_pred hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHH
Q 004879 99 DADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRK 178 (725)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (725)
.+...+...+|....-+...+-||++-. +. -++++.|...|..|+..++.|- ..+.+..+
T Consensus 21 ~a~~kLeeaek~adE~eR~~k~lE~r~~------------~d-----eEr~~~lE~qLkeak~~aeead---rKyeE~~R 80 (147)
T 2b9c_A 21 TALQKLEEAEKAADESERGMKVIESRAQ------------KD-----EEKMEIQEIQLKEAKHIAEDAD---RKYEEVAR 80 (147)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHH------------HH-----HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc------------cc-----HHHHHHHHHHHHHHHHHHHHHH---HhHHHHHH
Confidence 3444455555555555555666665543 22 3789999999999998888873 45677888
Q ss_pred HHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHH
Q 004879 179 KVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSY 228 (725)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (725)
|+.-++.-|+.+.-.- +....+++.||+.|+-..+.++|+
T Consensus 81 Kl~~~E~dLeraeeRa----------e~aE~k~~eLEeeL~~~~~nlKsL 120 (147)
T 2b9c_A 81 KLVIIESDLERAEERA----------ELSEGKCAELEEELKTVTNNLKSL 120 (147)
T ss_dssp HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888888887654332 334456667777777666666663
No 79
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=75.54 E-value=14 Score=33.74 Aligned_cols=69 Identities=25% Similarity=0.383 Sum_probs=44.7
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHH
Q 004879 70 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKV 149 (725)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (725)
+.++..-|+|...++..|+.|..++...+ ..++.|+.+|.|+|.+....-. ++..++
T Consensus 28 ~~~l~~~k~Ei~elrr~iq~L~~el~~l~----------~~~~~LE~~l~e~e~~~~~~l~-------------~~q~~i 84 (129)
T 3tnu_B 28 GDDLRNTKHEISEMNRMIQRLRAEIDNVK----------KQCANLQNAIADAEQRGELALK-------------DARNKL 84 (129)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH-------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHHHHHHH-------------HHHHHH
Confidence 45667778888888888888888876543 4578899999999987654322 455666
Q ss_pred HHHHHHHHHHhh
Q 004879 150 ENLQGLLAKATK 161 (725)
Q Consensus 150 ~~~~~~~~~~~~ 161 (725)
..|+.-|..+..
T Consensus 85 ~~lE~eL~~~r~ 96 (129)
T 3tnu_B 85 AELEEALQKAKQ 96 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHhHHHHHH
Confidence 666666665433
No 80
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=75.01 E-value=1.9 Score=46.13 Aligned_cols=71 Identities=14% Similarity=0.124 Sum_probs=47.2
Q ss_pred CCEEEEeecC-cCCCCHHHHHHHHHHhhcCCcEEEEE-cCCCcc--c----------ccHHHHHHhcCeEEEcCCcccch
Q 004879 632 KPLVGCITRL-VPQKGVHLIRHAIYRTLELGGQFILL-GSSPVP--H----------IQVYPILLSSFSFLRKHIFNICN 697 (725)
Q Consensus 632 ~plV~fVGRL-~~qKGvdlLieA~~~L~~~~iqLVIv-G~Gp~~--~----------le~~~iyAaADIfVlPS~~EpfG 697 (725)
.+++++.|++ .+.+....+++|+..+ +.+++++ |.++.. . +....+++.||+||..+- .
T Consensus 239 ~~v~v~~Gs~~~~~~~~~~~~~al~~~---~~~~v~~~g~~~~~~~~~~~~v~~~~~~~~~~~l~~~d~~v~~~G----~ 311 (415)
T 1iir_A 239 PPVYLGFGSLGAPADAVRVAIDAIRAH---GRRVILSRGWADLVLPDDGADCFAIGEVNHQVLFGRVAAVIHHGG----A 311 (415)
T ss_dssp CCEEEECC---CCHHHHHHHHHHHHHT---TCCEEECTTCTTCCCSSCGGGEEECSSCCHHHHGGGSSEEEECCC----H
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHC---CCeEEEEeCCCcccccCCCCCEEEeCcCChHHHHhhCCEEEeCCC----h
Confidence 4577888999 4888888888988765 4677765 765321 1 112378899999998642 2
Q ss_pred HHHHHHcCCCcc
Q 004879 698 LYIKLGQGGDLT 709 (725)
Q Consensus 698 Lv~LEAMg~~~~ 709 (725)
.|.+|||..+.|
T Consensus 312 ~t~~Ea~~~G~P 323 (415)
T 1iir_A 312 GTTHVAARAGAP 323 (415)
T ss_dssp HHHHHHHHHTCC
T ss_pred hHHHHHHHcCCC
Confidence 599999944444
No 81
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=74.26 E-value=2.5 Score=42.92 Aligned_cols=33 Identities=33% Similarity=0.483 Sum_probs=27.8
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
|||++. ||.|.+-..|++.|.++||+|++++-+
T Consensus 1 MkILVT----------GatGfIG~~L~~~L~~~G~~V~~l~R~ 33 (298)
T 4b4o_A 1 MRVLVG----------GGTGFIGTALTQLLNARGHEVTLVSRK 33 (298)
T ss_dssp CEEEEE----------TTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CEEEEE----------CCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 787654 788888889999999999999999743
No 82
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=73.72 E-value=15 Score=31.26 Aligned_cols=58 Identities=19% Similarity=0.280 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q 004879 174 QELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVK 237 (725)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (725)
+.++.+...||.+|.+..-.- ... ..-.+.++..+|..++....++..+++.||.++.
T Consensus 4 ~~l~~~~~sLE~~l~e~e~~~--~~~----~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Lln 61 (84)
T 1gk4_A 4 DALKGTNESLERQMREMEENF--AVE----AANYQDTIGRLQDEIQNMKEEMARHLREYQDLLN 61 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777654332 222 2345678888999999999999999999998843
No 83
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=73.66 E-value=17 Score=33.40 Aligned_cols=69 Identities=26% Similarity=0.304 Sum_probs=40.6
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHH
Q 004879 70 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKV 149 (725)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (725)
+.++...|+|...|+..|+.|..++... ...++.|+.+|.|+|.+....-. ++..++
T Consensus 30 ~~~l~~~k~Ei~elrr~iq~L~~el~~l----------~~~~~sLE~~l~e~e~~~~~~l~-------------~~q~~i 86 (131)
T 3tnu_A 30 SELVQSGKSEISELRRTMQNLEIELQSQ----------LSMKASLENSLEETKGRYCMQLA-------------QIQEMI 86 (131)
T ss_dssp -----------CHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHHHHHHHH-------------HHHHHH
Confidence 5567778888888888999998887654 34577899999999987654322 355666
Q ss_pred HHHHHHHHHHhh
Q 004879 150 ENLQGLLAKATK 161 (725)
Q Consensus 150 ~~~~~~~~~~~~ 161 (725)
..|+.-|..+..
T Consensus 87 ~~lE~eL~~~r~ 98 (131)
T 3tnu_A 87 GSVEEQLAQLRC 98 (131)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665443
No 84
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=71.93 E-value=16 Score=40.97 Aligned_cols=103 Identities=20% Similarity=0.257 Sum_probs=60.4
Q ss_pred hhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHH
Q 004879 74 DSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQ 153 (725)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (725)
..|-+-|.-+++-|+.||.++.++..+-..+...- -.+.+.|+
T Consensus 53 glLdkqErDltkrINELKnqLEdlsKnsKdseqy~-------------------------------------k~~~E~Lr 95 (562)
T 3ghg_A 53 GLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLT-------------------------------------TNIMEILR 95 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH-------------------------------------HHHHHTTS
T ss_pred hhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHH-------------------------------------HHHHHHHH
Confidence 44566677888888888888877755444222110 12222332
Q ss_pred HHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhh
Q 004879 154 GLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQ 219 (725)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (725)
.-+..+. +-+. .+-+=.++||+++--|++-+...- ..+ .++|+.++-+..+|+.||-+++
T Consensus 96 ~rq~q~~-dNdN--tynE~S~ELRRrIqyLKekVdnQl-snI--rvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 96 GDFSSAN-NRDN--TYNRVSEDLRSRIEVLKRKVIEKV-QHI--QLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp SHHHHHH-HHHH--HHHHTTHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhh-ccch--hHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 2222221 2222 233444588888888888776544 333 5677788888888888887554
No 85
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=71.48 E-value=27 Score=37.77 Aligned_cols=36 Identities=11% Similarity=0.151 Sum_probs=27.4
Q ss_pred hhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhh
Q 004879 75 SLKTENLSLKNDIKVLKAELNSVKDADERVVMLEME 110 (725)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (725)
+|-+-|.-+++-|+.||..|..+..+-..+..+-++
T Consensus 57 ~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~ 92 (390)
T 1deq_A 57 LIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKN 92 (390)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344556889999999999999988777766665544
No 86
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=71.38 E-value=76 Score=30.61 Aligned_cols=112 Identities=17% Similarity=0.239 Sum_probs=79.9
Q ss_pred hhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHH
Q 004879 73 LDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENL 152 (725)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (725)
-..+|.-+.-+.-.+..+... +.+.-+++..|+.+|..|+..+..|-+.|..-..|-+.-+-+.-| +..++..|
T Consensus 29 ~~rlkK~~tEl~k~~~~~E~~---~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~e---lq~ri~~L 102 (168)
T 3o0z_A 29 AVRLRKSHTEMSKSISQLESL---NRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGD---LQARITSL 102 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 344555554444444444443 344557888999999999999999999988888777777766664 78899988
Q ss_pred HHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhH
Q 004879 153 QGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIY 193 (725)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (725)
+.=|+.....-.+ +...|+.|+++|-.||..-..-.|-
T Consensus 103 ~~El~~~k~~~~k---~~~e~r~L~Ekl~~lEKe~a~~eid 140 (168)
T 3o0z_A 103 QEEVKHLKHNLEK---VEGERKEAQDMLNHSEKEKNNLEID 140 (168)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 8888875544443 5778999999999988755544443
No 87
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=69.99 E-value=2.7 Score=45.36 Aligned_cols=41 Identities=20% Similarity=0.133 Sum_probs=29.5
Q ss_pred CCCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 329 ISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 329 ~~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
...+|||++++. ..+|=-.-...|+++|+++||+|+++++.
T Consensus 17 ~~~~mrIl~~~~------~~~GHv~p~l~la~~L~~~GheV~~~~~~ 57 (441)
T 2yjn_A 17 RGSHMRVVFSSM------ASKSHLFGLVPLAWAFRAAGHEVRVVASP 57 (441)
T ss_dssp --CCCEEEEECC------SCHHHHTTTHHHHHHHHHTTCEEEEEECG
T ss_pred cCCccEEEEEcC------CCcchHhHHHHHHHHHHHCCCeEEEEeCc
Confidence 345699999954 12343344567999999999999999865
No 88
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=69.54 E-value=37 Score=31.00 Aligned_cols=21 Identities=19% Similarity=0.537 Sum_probs=13.5
Q ss_pred HhhhhHHHHHHHHHHHHhHhh
Q 004879 169 VLQQNQELRKKVDKLEESLDE 189 (725)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~ 189 (725)
...+.++|..++..+++.|++
T Consensus 74 L~~~k~eLe~~l~el~~rlee 94 (129)
T 2fxo_A 74 LIKNKIQLEAKVKEMNKRLED 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777766665
No 89
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=69.51 E-value=16 Score=30.49 Aligned_cols=65 Identities=25% Similarity=0.392 Sum_probs=36.6
Q ss_pred hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHH
Q 004879 99 DADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRK 178 (725)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (725)
+...++-.+|.+...|+..++.||.++..+|..-. .+-..+.++...||. -++.=.|||+
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~----------~~~~Elk~~~e~Ld~----------KI~eL~elrq 63 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQD----------AFRSNLKTLLEILDG----------KIFELTELRD 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH----------HHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhh----------HHHHHHHHHH
Confidence 34455556666666666666666666666553221 233445555555555 3455567777
Q ss_pred HHHHH
Q 004879 179 KVDKL 183 (725)
Q Consensus 179 ~~~~~ 183 (725)
.+-||
T Consensus 64 ~LakL 68 (72)
T 3cve_A 64 NLAKL 68 (72)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66654
No 90
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=69.35 E-value=4.7 Score=38.33 Aligned_cols=104 Identities=20% Similarity=0.234 Sum_probs=42.8
Q ss_pred hHHHhHHHHHHHHHHHhhcccCcccchhhhhccCCCccchhcccCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhh
Q 004879 19 HVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVK 98 (725)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (725)
.+++++.- |-..|++|+..|.+-..+|.....-.-.|.||+++ -...++..|+.|...+++.|..++.++.+
T Consensus 22 ~~~~md~~---l~~rL~~Rd~~E~~~~~l~~e~~~~~~~~~vs~~~---~~~~~I~~L~~El~~l~~ki~dLeeel~e-- 93 (152)
T 3a7p_A 22 QTDSMDDL---LIRRLTDRNDKEAHLNELFQDNSGAIGGNIVSHDD---ALLNTLAILQKELKSKEQEIRRLKEVIAL-- 93 (152)
T ss_dssp --------------------------------------CHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred cchhHHHH---HHHHHHHhhhHHHHHHHHHHhhccCCCcccccchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 35555444 66778888888877777666544222234566554 34567777777777777777777766543
Q ss_pred hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhh
Q 004879 99 DADERVVMLEMERSSLESSLKELESKLSISQED 131 (725)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (725)
-...+..+--|-..|...+.-+|.++...|++
T Consensus 94 -K~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~E 125 (152)
T 3a7p_A 94 -KNKNTERLNAALISGTIENNVLQQKLSDLKKE 125 (152)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666776677676666554443
No 91
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=68.94 E-value=81 Score=29.99 Aligned_cols=42 Identities=29% Similarity=0.373 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhh
Q 004879 145 LYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDE 189 (725)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (725)
+-+++..|+..|..|-.+++.|-..+ +.|++.||+||..|..
T Consensus 75 yEeqIk~L~~kLKEAE~RAE~AERsv---~kLEk~id~lEd~L~~ 116 (155)
T 2efr_A 75 YEEEIKVLSDKLKEAETRAEFAERSV---TKLEKSIDDLEDELYA 116 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 44677778888888888888875544 4577777777776653
No 92
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=68.81 E-value=3.9 Score=43.58 Aligned_cols=71 Identities=10% Similarity=0.076 Sum_probs=47.0
Q ss_pred CCEEEEeecCc---CCCCHHHHHHHHHHhhcCCcEEEEE-cCCCcc--c----------ccHHHHHHhcCeEEEcCCccc
Q 004879 632 KPLVGCITRLV---PQKGVHLIRHAIYRTLELGGQFILL-GSSPVP--H----------IQVYPILLSSFSFLRKHIFNI 695 (725)
Q Consensus 632 ~plV~fVGRL~---~qKGvdlLieA~~~L~~~~iqLVIv-G~Gp~~--~----------le~~~iyAaADIfVlPS~~Ep 695 (725)
.+++++.|++. +.+.+..+++|+..+ +.+++++ |.++.. . +....+|+.||++|..+-
T Consensus 238 ~~v~v~~Gs~~~~~~~~~~~~~~~al~~~---~~~~v~~~g~~~~~~~~~~~~v~~~~~~~~~~ll~~~d~~v~~~G--- 311 (416)
T 1rrv_A 238 PPVHIGFGSSSGRGIADAAKVAVEAIRAQ---GRRVILSRGWTELVLPDDRDDCFAIDEVNFQALFRRVAAVIHHGS--- 311 (416)
T ss_dssp CCEEECCTTCCSHHHHHHHHHHHHHHHHT---TCCEEEECTTTTCCCSCCCTTEEEESSCCHHHHGGGSSEEEECCC---
T ss_pred CeEEEecCCCCccChHHHHHHHHHHHHHC---CCeEEEEeCCccccccCCCCCEEEeccCChHHHhccCCEEEecCC---
Confidence 35677789985 466777777777664 5677775 765321 1 112378899999998432
Q ss_pred chHHHHHHcCCCcc
Q 004879 696 CNLYIKLGQGGDLT 709 (725)
Q Consensus 696 fGLv~LEAMg~~~~ 709 (725)
+.|.+||+..+.|
T Consensus 312 -~~t~~Ea~~~G~P 324 (416)
T 1rrv_A 312 -AGTEHVATRAGVP 324 (416)
T ss_dssp -HHHHHHHHHHTCC
T ss_pred -hhHHHHHHHcCCC
Confidence 4599999944443
No 93
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=68.79 E-value=53 Score=28.66 Aligned_cols=86 Identities=19% Similarity=0.224 Sum_probs=46.3
Q ss_pred HHHHHHHHhhhhhhhhhH----HHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhh
Q 004879 86 DIKVLKAELNSVKDADER----VVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATK 161 (725)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (725)
|++++..+|..++..+.+ +..||+|++.+++.|..+|.....- ..+-...|..--.++..+-...+
T Consensus 5 ~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L----------~~eE~~~w~eyn~~~~ql~e~~d 74 (96)
T 3q8t_A 5 DSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERL----------DQEEAQYQREYSEFKRQQLELDD 74 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555544444433 4578999999999999988765432 22223456665555544433222
Q ss_pred hhhhHHHHhhhhHHHHHHHHHHH
Q 004879 162 QADQAISVLQQNQELRKKVDKLE 184 (725)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~ 184 (725)
.-+ ++-.|.+--+.++|+|+
T Consensus 75 E~~---Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 75 ELK---SVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHH---HHHHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHHHHhh
Confidence 222 23334444445555554
No 94
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=68.72 E-value=2.3 Score=37.75 Aligned_cols=34 Identities=21% Similarity=0.408 Sum_probs=28.3
Q ss_pred CcccchhhHhhhhhhhhhccchhHHHHHHHHhhh
Q 004879 63 NSEIHSFSKELDSLKTENLSLKNDIKVLKAELNS 96 (725)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (725)
+..+..+.+++++|+.||-.|+..++.|..+|-.
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3367788899999999999999999888888755
No 95
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=68.00 E-value=50 Score=36.75 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=18.9
Q ss_pred hhhhhhhccchhHHHHHHHHhhhhhhhhhH
Q 004879 74 DSLKTENLSLKNDIKVLKAELNSVKDADER 103 (725)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (725)
+.|-.-...++.||+.||..+.++.++.-.
T Consensus 89 D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~ 118 (464)
T 1m1j_B 89 TTLLKQEKTVKPVLRDLKDRVAKFSDTSTT 118 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHhHHHHHHHHHHHHhhhhhH
Confidence 334344445777888888877777665543
No 96
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=67.91 E-value=4.4 Score=36.29 Aligned_cols=53 Identities=23% Similarity=0.278 Sum_probs=32.4
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcc
Q 004879 66 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSIS 128 (725)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (725)
+-++..||...+.+-. .|++++.+.+ ..+..|||||..-=++||++|-=...+
T Consensus 6 ~~al~~eL~~~~~ei~-------~L~~ei~eLk---~~ve~lEkERDFYF~KLRdIEiLcQe~ 58 (106)
T 4e61_A 6 LVAIQAELTKSQETIG-------SLNEEIEQYK---GTVSTLEIEREFYFNKLRDIEILVHTT 58 (106)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666665544 4444443333 334568999998888888887654443
No 97
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=67.45 E-value=17 Score=39.80 Aligned_cols=43 Identities=12% Similarity=0.150 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHhhhhHH-HHHHHHHHHHhH
Q 004879 145 LYEKVENLQGLLAKATKQADQAISVLQQNQE-LRKKVDKLEESL 187 (725)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 187 (725)
-.+.|..|+..+.++.++...-+.+..|.-. ...++.++|..+
T Consensus 57 ~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~ 100 (411)
T 3ghg_C 57 VKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASI 100 (411)
T ss_dssp HHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888877776666665544 556666665554
No 98
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=67.26 E-value=91 Score=29.91 Aligned_cols=10 Identities=40% Similarity=0.624 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 004879 24 EDQLQKLQHE 33 (725)
Q Consensus 24 ~~~~~~~~~~ 33 (725)
+.+++.++.+
T Consensus 54 ~~~~~~~~~~ 63 (284)
T 1c1g_A 54 EDELDKYSEA 63 (284)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 99
>2p01_A Alpha-2-macroglobulin receptor-associated protein; RAP, cell adhesion; NMR {Homo sapiens} PDB: 2p03_A
Probab=67.03 E-value=78 Score=33.41 Aligned_cols=110 Identities=17% Similarity=0.132 Sum_probs=50.0
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhhhhhh-hHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHH--
Q 004879 70 SKELDSLKTENLSLKNDIKVLKAELNSVKDAD-ERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLY-- 146 (725)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 146 (725)
....+.||+-...+++-...|........... +| -+-.+.+|=.--..|+=-..+|.+++.|-...=
T Consensus 184 ~~k~~~Lk~~~r~i~~~ydrL~rl~~~g~~~~~eF----------~EPkVq~LW~lA~~~NFT~~ELeSlK~EL~HfE~r 253 (323)
T 2p01_A 184 HSRHTELKEKLRSINQGLDRLRRVSHQGYSTEAEF----------EEPRVIDLWDLAQSANLTDKELEAFREELKHFEAK 253 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSCSS----------CCTTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHhhHHHHHHHHhcCCCcccCc----------cChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 33445566666666666666664333332211 11 111222221111122222334445555544442
Q ss_pred -HHHHHHHHHHHH--Hhhh--------------hhhHHHHhhhhHHHHHHHHHHHHhHhh
Q 004879 147 -EKVENLQGLLAK--ATKQ--------------ADQAISVLQQNQELRKKVDKLEESLDE 189 (725)
Q Consensus 147 -~~~~~~~~~~~~--~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (725)
+|...+++.|+- +..+ .+...+.-++...+-+||.||...|+.
T Consensus 254 L~KlrH~~~El~l~~~k~k~~e~~g~~~~~~~~~~k~~~leek~Kk~~rKV~Kl~~~Le~ 313 (323)
T 2p01_A 254 IEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKELGYTVKKHLQDLSG 313 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566665552 1111 122334455556666777777666653
No 100
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=65.71 E-value=5.4 Score=42.55 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=28.9
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCC
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 376 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y 376 (725)
|||++++. ..+|=-.-...|+++|+++||+|+++++..
T Consensus 1 M~Il~~~~------~~~GHv~P~l~la~~L~~~Gh~V~~~~~~~ 38 (415)
T 1iir_A 1 MRVLLATC------GSRGDTEPLVALAVRVRDLGADVRMCAPPD 38 (415)
T ss_dssp CEEEEECC------SCHHHHHHHHHHHHHHHHTTCEEEEEECGG
T ss_pred CeEEEEcC------CCchhHHHHHHHHHHHHHCCCeEEEEcCHH
Confidence 79998853 134545556679999999999999998663
No 101
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=65.54 E-value=19 Score=31.74 Aligned_cols=44 Identities=25% Similarity=0.367 Sum_probs=27.3
Q ss_pred HHHHHHHHHH-HHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhh
Q 004879 145 LYEKVENLQG-LLAKATKQADQAISVLQQNQELRKKVDKLEESLDEAN 191 (725)
Q Consensus 145 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (725)
+-..||+|-+ |.+.|-+-|-.| =.....+++|+++|++-|.+.+
T Consensus 52 ie~ElEeLTasLFeEAN~MVa~a---r~e~~~~e~kn~~L~~qL~d~d 96 (97)
T 2eqb_B 52 LNKEVEDLTASLFDEANNMVADA---RKEKYAIEILNKRLTEQLREKD 96 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhcc
Confidence 3345555543 445555555555 2345578888888888887765
No 102
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=64.01 E-value=8.8 Score=29.75 Aligned_cols=47 Identities=30% Similarity=0.538 Sum_probs=37.0
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhh
Q 004879 68 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESK 124 (725)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (725)
.|..+...||.||.-|+..++ ++...+-+||.|-+.+..-++.|-++
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~----------dNS~~lskLE~ets~mKevlk~lq~~ 53 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELE----------DNSNHLTKLETEASNMKEVLKQLQGS 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHH----------hhHHHHHHHHhhhhhHHHHHHHHccc
Confidence 467788999999998887654 45566778999999998888877665
No 103
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=63.52 E-value=42 Score=37.13 Aligned_cols=21 Identities=14% Similarity=0.444 Sum_probs=15.4
Q ss_pred hhhhHHHHHHHHHHHHhHhhh
Q 004879 170 LQQNQELRKKVDKLEESLDEA 190 (725)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~ 190 (725)
+.|++++.+.|++|..+|.+.
T Consensus 57 ~kqerdv~~rI~kLkn~L~~~ 77 (491)
T 1m1j_A 57 DDTDQNYSQRIDNIRQQLADS 77 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHH
Confidence 446778888888888877764
No 104
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=63.07 E-value=38 Score=29.39 Aligned_cols=84 Identities=20% Similarity=0.331 Sum_probs=52.3
Q ss_pred hhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhh
Q 004879 84 KNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQA 163 (725)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (725)
|.+|+.|-..+.. -=++|..||.+-+.|+..++.+-.+ ..+.+.+ .....++.|+..++.++.
T Consensus 8 Ke~mq~LNdRlAs---yIdKVR~LEqqN~~Le~~i~~l~~~------~~~~~~~------~ye~~i~~Lr~~i~~~~~-- 70 (93)
T 3s4r_A 8 KVELQELNDRFAN---LIDKVRFLEQQNKILLAELEQLKGQ------GKSRLGD------LYEEEMRELRRQVDQLTN-- 70 (93)
T ss_dssp CCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH------HHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhc------cCCCcHH------HHHHHHHHHHHHHHHHHH--
Confidence 4556666655544 4478999999999999888877653 1222221 245678889999988764
Q ss_pred hhHHHHhhhhHHHHHHHHHHHH
Q 004879 164 DQAISVLQQNQELRKKVDKLEE 185 (725)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~ 185 (725)
+.|-+.++-+. |+..++.++.
T Consensus 71 ek~~l~~e~dn-l~~~~~~~k~ 91 (93)
T 3s4r_A 71 DKARVEVERDN-LAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHh
Confidence 34444444333 5555555543
No 105
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=62.93 E-value=29 Score=40.25 Aligned_cols=46 Identities=22% Similarity=0.189 Sum_probs=40.9
Q ss_pred cchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 004879 82 SLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSI 127 (725)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (725)
+=+++|+.+..++...++.|+....+..-+..||+-+-+++.+|..
T Consensus 524 ls~~ei~~~~~~~~~~~~~D~~~~~~~~~~n~le~~i~~~~~~l~~ 569 (675)
T 3d2f_A 524 LDAKKLNELIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEE 569 (675)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999988899999999999999864
No 106
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=62.73 E-value=1.5e+02 Score=34.54 Aligned_cols=48 Identities=17% Similarity=0.100 Sum_probs=32.0
Q ss_pred hccchhHHHHHHHHhhhhhhhhhHHHHHHhh----hhhHHhhHHHHHhhhhc
Q 004879 80 NLSLKNDIKVLKAELNSVKDADERVVMLEME----RSSLESSLKELESKLSI 127 (725)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 127 (725)
|..|+.+++.++.-|..-.+.|..+...=++ -..|.....+|+..+-.
T Consensus 491 ~~~l~~~~~~~~~~l~~A~~sD~~v~~~~~~~~~~l~~L~~~~~~l~~~~p~ 542 (704)
T 2xs1_A 491 YKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPS 542 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHTSCHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCHHHHHhhCcc
Confidence 3457888888888888888888877754333 23355566677765544
No 107
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=61.35 E-value=16 Score=31.37 Aligned_cols=57 Identities=12% Similarity=0.159 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q 004879 175 ELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVK 237 (725)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (725)
.|+.+...||.+|.+..-. +.- -..-.+.++..+|..+.....++..+++.|+.++.
T Consensus 7 ~L~~q~~~Le~~l~e~E~~--~~~----~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~Lln 63 (86)
T 1x8y_A 7 QLQCQLAAKEAKLRDLEDS--LAR----ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLD 63 (86)
T ss_dssp -----CTTHHHHHHHHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666655431 111 22345677888899999999999999999998843
No 108
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=60.96 E-value=34 Score=29.07 Aligned_cols=67 Identities=24% Similarity=0.327 Sum_probs=40.0
Q ss_pred hhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHH
Q 004879 97 VKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQEL 176 (725)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (725)
..+...++-.+|.+.+.|+..++.||.++..+|..-. .+-..+.++...||. -++.=.||
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~----------~~~~Elk~l~e~Ld~----------KI~eL~el 67 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERE----------RARAEVGRAAQLLDV----------SLFELSEL 67 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH----------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhh----------HHHHHHHH
Confidence 3455666777777777777777777777776664322 233445555555554 34555677
Q ss_pred HHHHHHH
Q 004879 177 RKKVDKL 183 (725)
Q Consensus 177 ~~~~~~~ 183 (725)
|..+-||
T Consensus 68 RqgLakL 74 (79)
T 3cvf_A 68 REGLARL 74 (79)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7776665
No 109
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=60.69 E-value=44 Score=29.36 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=5.5
Q ss_pred hhHHHHHHHHhh
Q 004879 84 KNDIKVLKAELN 95 (725)
Q Consensus 84 ~~~~~~~~~~~~ 95 (725)
|.-|++||.+..
T Consensus 8 KkKm~~lk~e~e 19 (101)
T 3u1c_A 8 KKKMQMLKLDKE 19 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344455554443
No 110
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=60.46 E-value=12 Score=27.67 Aligned_cols=40 Identities=43% Similarity=0.500 Sum_probs=22.9
Q ss_pred chhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhh
Q 004879 83 LKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLS 126 (725)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (725)
||.++++||.+.-. .|.+..||.|-..|+..|..|-||+.
T Consensus 5 lkselqalkkegfs----peelaaleselqalekklaalksklq 44 (48)
T 1g6u_A 5 LKSELQALKKEGFS----PEELAALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHTTCS----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666655432 35566666666666666666666553
No 111
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=57.76 E-value=51 Score=30.67 Aligned_cols=67 Identities=15% Similarity=0.191 Sum_probs=39.7
Q ss_pred HHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHH
Q 004879 104 VVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKL 183 (725)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (725)
++.+.++...|++.+.++++.+. . +=.++..+|--++.+++..+. .-.++++|++++-+|
T Consensus 70 l~k~~~~~~~L~~~l~~~~kE~~----------~-------lK~el~~~~~k~e~~~~e~~~---l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 70 YFKAKKMADSLSLDIENKDKEIY----------D-------LKHELIAAQIKAESSAKEIKE---LKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----------H-------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------H-------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 55566666666666666655433 2 333334444444444444333 356778889999999
Q ss_pred HHhHhhh
Q 004879 184 EESLDEA 190 (725)
Q Consensus 184 ~~~~~~~ 190 (725)
|..|++.
T Consensus 130 e~~~~~~ 136 (138)
T 3hnw_A 130 ETELNDS 136 (138)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 8888764
No 112
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=57.37 E-value=12 Score=43.75 Aligned_cols=92 Identities=12% Similarity=-0.119 Sum_probs=64.5
Q ss_pred HHHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhc--CCcEEEEEcCCCcc--cccH-----------------
Q 004879 619 IRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVP--HIQV----------------- 677 (725)
Q Consensus 619 LRk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~--~~iqLVIvG~Gp~~--~le~----------------- 677 (725)
.|+.+||++ +.++++|..++.. =-...++++.++++ ++.+|++...+... .+.+
T Consensus 513 ~R~~~gLp~---~~v~f~~fN~~~K--i~p~~~~~W~~IL~~vP~S~L~Ll~~~~~~~~~l~~~~~~~gi~~~r~~f~~~ 587 (723)
T 4gyw_A 513 TRSQYGLPE---DAIVYCNFNQLYK--IDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPV 587 (723)
T ss_dssp EGGGGTCCT---TSEEEECCSCGGG--CCHHHHHHHHHHHHHCSSEEEEEEETTGGGHHHHHHHHHHTTCCGGGEEEEEC
T ss_pred chhhcCCCC---CCEEEEeCCcccc--CCHHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHHHHHHHhcCCCcCeEEECCC
Confidence 366789984 6677777766654 35577888888876 48888887654321 1111
Q ss_pred ----H--HHHHhcCeEEEcCCcccchHHHHHHcCCCccccCCCCC
Q 004879 678 ----Y--PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNNCEP 716 (725)
Q Consensus 678 ----~--~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V~~~~~G 716 (725)
+ ..|..+|+++=|--| +=|.|..||+-+|.||++-.+.
T Consensus 588 ~~~~~~l~~~~~~Di~LDt~p~-~g~tT~~eal~~GvPvvt~~g~ 631 (723)
T 4gyw_A 588 APKEEHVRRGQLADVCLDTPLC-NGHTTGMDVLWAGTPMVTMPGE 631 (723)
T ss_dssp CCHHHHHHHGGGCSEEECCSSS-CCSHHHHHHHHTTCCEEBCCCS
T ss_pred CCHHHHHHHhCCCeEEeCCCCc-CCHHHHHHHHHcCCCEEEccCC
Confidence 0 788899999998777 4589999999777777765544
No 113
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=56.83 E-value=24 Score=37.09 Aligned_cols=91 Identities=14% Similarity=0.120 Sum_probs=56.5
Q ss_pred HHHHcCCCCCCCCCCEE-EEeecCcCCCCH--HHHHHHHHHhhcCCcEEEEEcCCCccccc-------------------
Q 004879 619 IRKHLGLSSADARKPLV-GCITRLVPQKGV--HLIRHAIYRTLELGGQFILLGSSPVPHIQ------------------- 676 (725)
Q Consensus 619 LRk~lGL~~~d~~~plV-~fVGRL~~qKGv--dlLieA~~~L~~~~iqLVIvG~Gp~~~le------------------- 676 (725)
+.+..|+++ ++++| +..|--.+.|.+ +.+.+.+..+.+.+.++++.|+..+....
T Consensus 175 ~l~~~g~~~---~~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~g~~vvl~g~~~e~~~~~~i~~~~~~~~~~l~g~~s 251 (349)
T 3tov_A 175 FYSSHGLTD---TDILIGFNIGSAVPEKRWPAERFAHVADYFGRLGYKTVFFGGPMDLEMVQPVVEQMETKPIVATGKFQ 251 (349)
T ss_dssp HHHHTTCCT---TCCEEEEECCCSSGGGCCCHHHHHHHHHHHHHHTCEEEECCCTTTHHHHHHHHHTCSSCCEECTTCCC
T ss_pred HHHHcCCCC---CCCEEEEeCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEeCcchHHHHHHHHHhcccccEEeeCCCC
Confidence 445678763 45655 445644456665 57888887777668899998875433210
Q ss_pred ---HHHHHHhcCeEEEcCCcccchHHHHHHcCCCccccCCCC
Q 004879 677 ---VYPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNNCE 715 (725)
Q Consensus 677 ---~~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~V~~~~~ 715 (725)
-..+++.||++|.+ ++-++-..-|+|.+.+++-|.+
T Consensus 252 l~e~~ali~~a~~~i~~---DsG~~HlAaa~g~P~v~lfg~t 290 (349)
T 3tov_A 252 LGPLAAAMNRCNLLITN---DSGPMHVGISQGVPIVALYGPS 290 (349)
T ss_dssp HHHHHHHHHTCSEEEEE---SSHHHHHHHTTTCCEEEECSSC
T ss_pred HHHHHHHHHhCCEEEEC---CCCHHHHHHhcCCCEEEEECCC
Confidence 01899999999987 2333344345567766665544
No 114
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=56.07 E-value=33 Score=31.31 Aligned_cols=68 Identities=21% Similarity=0.271 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhch
Q 004879 145 LYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSD 222 (725)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (725)
|-..|-.|++-|+....+.++| +..|..|+..++.|+....++.-- ++.+. ---.|..+.|+|++++.
T Consensus 45 l~~~i~~Le~eL~e~r~~~q~a---~~e~e~Lr~e~~~l~~~~~~~~~~------q~~~~-e~E~kAqa~Eerf~KLK 112 (120)
T 3i00_A 45 LKGHVSELEADLAEQQHLRQQA---ADDCEFLRAELDELRRQREDTEKA------QRSLS-EIERKAQANEQRYSKLK 112 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHTTCC----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhHHH------HHHHH-HHHHHHHHHHHHHHHHH
Confidence 4455555666666655555555 455667777766665544433211 11111 12335556666666654
No 115
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=55.98 E-value=9 Score=40.73 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=28.9
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
|||++++. ..+|=-.-...|+++|+++||+|+++++.
T Consensus 1 MrIl~~~~------~~~GH~~p~l~la~~L~~~Gh~V~~~~~~ 37 (416)
T 1rrv_A 1 MRVLLSVC------GTRGDVEIGVALADRLKALGVQTRMCAPP 37 (416)
T ss_dssp CEEEEEEE------SCHHHHHHHHHHHHHHHHTTCEEEEEECG
T ss_pred CeEEEEec------CCCccHHHHHHHHHHHHHCCCeEEEEeCH
Confidence 89999853 13454555667999999999999999875
No 116
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=55.20 E-value=15 Score=38.18 Aligned_cols=40 Identities=28% Similarity=0.313 Sum_probs=28.3
Q ss_pred CCCCCeEEEEcCccCCCCCCCcH-HHHHHHHHHHHHHCCCeEEEE
Q 004879 329 ISSGLHVIHIAAEMAPVAKVGGL-GDVVAGLGKALQKKGHLVEIV 372 (725)
Q Consensus 329 ~~~~MkILhIs~E~~P~~kvGGl-g~vV~~LaraL~~~GHeV~VI 372 (725)
-+++||||+|.. .|. .++. ........+++.+.||+|+|+
T Consensus 19 ~m~~MKiLII~a--HP~--~~S~n~aL~~~~~~~l~~~G~eV~v~ 59 (280)
T 4gi5_A 19 YFQSMKVLLIYA--HPE--PRSLNGALKNFAIRHLQQAGHEVQVS 59 (280)
T ss_dssp ---CCEEEEEEC--CSC--TTSHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred hhhCCeEEEEEe--CCC--CccHHHHHHHHHHHHHHHCCCeEEEE
Confidence 367899999987 464 3454 344555788899999999998
No 117
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=53.99 E-value=1e+02 Score=26.19 Aligned_cols=54 Identities=15% Similarity=0.104 Sum_probs=26.4
Q ss_pred hhHHhhHHHHHhhhhcch---hhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhh
Q 004879 112 SSLESSLKELESKLSISQ---EDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQ 165 (725)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (725)
..|.+=|.+.|.++.... .|+..+..+..+.+.+-..++.-+..++.....+++
T Consensus 12 ~el~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~ 68 (119)
T 3uun_A 12 EEVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSK 68 (119)
T ss_dssp HHHHHHHHHHHHHHHHHCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 345555666666654322 233344444444455555555555555554444433
No 118
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=53.79 E-value=20 Score=37.93 Aligned_cols=94 Identities=16% Similarity=0.138 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHhhhh---------h-hHHHHhhhhHHHHHHHHHHHHhHhhhhhH--HHhH-HHHHhHHHHHHHHHHH
Q 004879 147 EKVENLQGLLAKATKQA---------D-QAISVLQQNQELRKKVDKLEESLDEANIY--KLSS-EKMQQYNELMQQKMKL 213 (725)
Q Consensus 147 ~~~~~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~ 213 (725)
++++.++..|..++... + ..+.+.-. .+...+|+++=.|+.-..+. .... ...+....-+++|+..
T Consensus 159 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vv~~~-~~~~~~v~~il~s~~f~~~~~p~~~~~~~p~~~l~~l~~~i~~ 237 (357)
T 3rrk_A 159 EELEAVRKALQEALADRFVLEAEPLENQLAALVVVK-RSELEAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARL 237 (357)
T ss_dssp HHHHHHHHHHHHHHTTSCEEEEEECSSSEEEEEEEE-GGGHHHHHHHHHTTTCCBCCCCGGGGGSCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcCCeEEEEeecCCCcEEEEEEEE-HHHHHHHHHHHHHCCCeeccCCcccCCCCHHHHHHHHHHHHHH
Confidence 45666777777765431 1 12333332 34566888887777543332 1111 0333455667788888
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 004879 214 LEERLQRSDEEIHSYVQLYQESVKEFQD 241 (725)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (725)
++..++..+.++..+.+.+...+....+
T Consensus 238 l~~~l~~~~~~l~~~~~~~~~~l~~~~~ 265 (357)
T 3rrk_A 238 APEELVGIREEVARLSRESGEALIALWT 265 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888877776555443333
No 119
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=53.12 E-value=1.3e+02 Score=27.30 Aligned_cols=65 Identities=18% Similarity=0.273 Sum_probs=45.1
Q ss_pred HHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHH
Q 004879 156 LAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHS 227 (725)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (725)
+.+-...|+.|...|.++..++.+|+.-.+-++...=.++|.. .+++.++.++.-++.++.+|..
T Consensus 29 y~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~-------~y~~l~k~Y~~~~keLd~~ik~ 93 (119)
T 3etw_A 29 FNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKS-------QYQELASKYEDALKKLEAEMEQ 93 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456788888999999999998877766666555556654 6677777777766666666655
No 120
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=51.28 E-value=25 Score=31.68 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=30.9
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeE-EEEee
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLV-EIVLP 374 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV-~VItP 374 (725)
||++++... +|+ ..-.+.....++.++.+.||+| .|+.-
T Consensus 1 mk~~iiv~~-~p~--~~~~~~~al~~a~a~~~~g~~v~~vff~ 40 (130)
T 2hy5_A 1 MKFALQINE-GPY--QHQASDSAYQFAKAALEKGHEIFRVFFY 40 (130)
T ss_dssp CEEEEEECS-CTT--TSTHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CEEEEEEeC-CCC--CcHHHHHHHHHHHHHHhcCCeeCEEEEe
Confidence 788888764 565 3356778899999999999999 88863
No 121
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=50.92 E-value=92 Score=29.58 Aligned_cols=28 Identities=11% Similarity=0.296 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHhhh
Q 004879 224 EIHSYVQLYQESVKEFQDTLHSLKEESK 251 (725)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (725)
...++-+++...+.+||.+-..-.++.+
T Consensus 127 q~~~L~~kf~~~m~~yq~~q~~y~~~~K 154 (180)
T 1s94_A 127 QYSTISRKFVEVMSDYNTTQIDYRDRCK 154 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888886555444443
No 122
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=50.73 E-value=2.1e+02 Score=31.95 Aligned_cols=20 Identities=25% Similarity=0.312 Sum_probs=14.7
Q ss_pred hhhHHHhHHHHHHHHHHHhh
Q 004879 17 KIHVELLEDQLQKLQHELTH 36 (725)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~ 36 (725)
+--++-.|.++|+.|.||.+
T Consensus 313 ~hp~~~Aer~~e~a~ael~~ 332 (551)
T 2b5u_A 313 THPVEAAERNYERARAELNQ 332 (551)
T ss_dssp HCHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHH
Confidence 34467778888888888875
No 123
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=50.49 E-value=97 Score=28.77 Aligned_cols=59 Identities=10% Similarity=0.140 Sum_probs=31.8
Q ss_pred HHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 004879 167 ISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQES 235 (725)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (725)
+-+.+..-.++++.+.|++.+++- ..-+|-++..+....+.+..+..++..+-+.+..+
T Consensus 64 LNiadEl~k~~~~~~~L~~~l~~~----------~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l 122 (138)
T 3hnw_A 64 LNIADDYFKAKKMADSLSLDIENK----------DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKY 122 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666777776666542 12234455555555555666665555554444433
No 124
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=50.01 E-value=2.1e+02 Score=28.67 Aligned_cols=65 Identities=14% Similarity=0.160 Sum_probs=37.1
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHH
Q 004879 87 IKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQG 154 (725)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (725)
++.+..+....+.+++ -.-..|+..|++.+..|+.++..-+-.... +-.-.+.-.-|.+.+....
T Consensus 46 vq~~l~~f~~fr~~ek--ppk~~EK~~Le~ll~~lqtklr~~~~~ppe-g~~~~di~~~W~~Le~ae~ 110 (235)
T 2odv_A 46 IEILWSQFLKFKEMEL--PAKEADKNRSKGIYQSLEGAVQAGQLKVPP-GYHPLDVEKEWGKLHVAIL 110 (235)
T ss_dssp HHHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHTTSSCCCT-TCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHHHHHHHcCCCCCCC-CCCHHHHHHHHHHHHHHHH
Confidence 3334455556665555 334577888999999999999952211111 1111233355777765444
No 125
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=49.65 E-value=39 Score=28.37 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 004879 206 LMQQKMKLLEERLQRSDEEIHSYVQLYQES 235 (725)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (725)
-++.|+..+|+.|+++.+.......+....
T Consensus 45 ~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 45 ALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777776666544
No 126
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=49.53 E-value=60 Score=27.80 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=15.5
Q ss_pred HhhhhHHHHHHHHHHHHhHhh
Q 004879 169 VLQQNQELRKKVDKLEESLDE 189 (725)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~ 189 (725)
...+.++|..++..|++-|++
T Consensus 68 L~~~K~eLE~~l~el~~rl~e 88 (89)
T 3bas_A 68 LLSKNYHLENEVARLKKLVGE 88 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 456677888888888877764
No 127
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=48.67 E-value=89 Score=29.07 Aligned_cols=45 Identities=24% Similarity=0.355 Sum_probs=22.5
Q ss_pred HHHHHHHHHH-HHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhh
Q 004879 145 LYEKVENLQG-LLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANI 192 (725)
Q Consensus 145 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (725)
+-..+|+|-+ |.+.|-+-+..| =.....+++|+++|++.|.+.+.
T Consensus 72 ie~ElE~LTasLFeEAN~MVa~a---r~~~~~~e~r~~~L~~ql~e~e~ 117 (135)
T 2e7s_A 72 LNKEVEDLTASLFDEANNLVADA---RMEKYAIEILNKRLTEQLREKDM 117 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555543 334444444433 12334566666666666666543
No 128
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=48.67 E-value=2.4e+02 Score=28.91 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=27.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhHHhhhhh
Q 004879 221 SDEEIHSYVQLYQESVKEFQDTLHSLKEESKKR 253 (725)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (725)
-++|+..+|+-|.+.++++...++.|.+.-+.+
T Consensus 214 d~eElEmLLE~Y~~q~d~~~~~~~~L~~~I~~T 246 (261)
T 3rkg_A 214 NFSDLEMLIETYYTQCDEYVQQSESLIQDIKST 246 (261)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999998888776654
No 129
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=48.11 E-value=31 Score=31.95 Aligned_cols=40 Identities=10% Similarity=0.162 Sum_probs=32.7
Q ss_pred CCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeE-EEEe
Q 004879 331 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLV-EIVL 373 (725)
Q Consensus 331 ~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV-~VIt 373 (725)
..|||+++... +|+ ..-.+.....++.++.+.||+| .|+.
T Consensus 11 ~~~~~~ivv~~-~Py--g~~~a~~Al~~A~aala~g~eV~~VFf 51 (140)
T 2d1p_A 11 GSMRFAIVVTG-PAY--GTQQASSAFQFAQALIADGHELSSVFF 51 (140)
T ss_dssp CCCEEEEEECS-CSS--SSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CceEEEEEEcC-CCC--CcHHHHHHHHHHHHHHHCCCccCEEEE
Confidence 35999999874 676 3456778899999999999999 8886
No 130
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=48.10 E-value=41 Score=29.40 Aligned_cols=47 Identities=13% Similarity=0.137 Sum_probs=26.1
Q ss_pred hhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHh
Q 004879 101 DERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKAT 160 (725)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (725)
+..+..|+++.+.|+.+|+|+|.++....+ .+..++..|++-|..+.
T Consensus 11 ~~~~~~Lq~~~~~LE~~l~e~E~~~~~e~~-------------~~q~~i~~lE~eL~~~r 57 (95)
T 3mov_A 11 ENLYFQGQKESRACLERIQELEDLLAKEKD-------------NSRRMLTDKEREMAEIR 57 (95)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHH
Confidence 345667778888888888888887654222 35555666666555543
No 131
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=47.24 E-value=29 Score=30.33 Aligned_cols=56 Identities=11% Similarity=0.156 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 004879 175 ELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESV 236 (725)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (725)
.|+.+.+.||.+|.+..- -+...+ .-.+..+..+|..++....++..+++.|+.++
T Consensus 16 ~Lq~~~~~LE~~l~e~E~--~~~~e~----~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Ll 71 (95)
T 3mov_A 16 QGQKESRACLERIQELED--LLAKEK----DNSRRMLTDKEREMAEIRDQMQQQLNDYEQLL 71 (95)
T ss_dssp --CCCCHHHHHHHHHHHH--HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554433 111112 34566778899999999999999999999883
No 132
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=47.12 E-value=97 Score=28.48 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhH
Q 004879 147 EKVENLQGLLAKATKQADQAISVLQQNQ 174 (725)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (725)
|.+-.||+.|+....+.-.++-+|+++.
T Consensus 3 DrlTQLQd~ldqla~~f~nsig~Lq~~a 30 (132)
T 1ykh_B 3 DRMTQLQICLDQMTEQFCATLNYIDKNH 30 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4566788888887778777888887553
No 133
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A {Helicobacter pylori} PDB: 4g0h_A
Probab=46.78 E-value=70 Score=36.10 Aligned_cols=54 Identities=31% Similarity=0.305 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHhh-------hhhhHHH-------HhhhhHHHHHHHHHHHHhHhhhhhHHHhHH
Q 004879 145 LYEKVENLQGLLAKATK-------QADQAIS-------VLQQNQELRKKVDKLEESLDEANIYKLSSE 198 (725)
Q Consensus 145 ~~~~~~~~~~~~~~~~~-------~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (725)
|-+||+||-..+..+.+ .++||+. =|..||+|.+|||-|-..+-++....-|+-
T Consensus 740 v~dKIDNLNQAlsefKnGKngDFSkVeQAlsDLknSkkdLsrNQELtqKVdNLNQAVsEaK~tgdFSk 807 (876)
T 4dvy_P 740 WISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQKVTDKVDNLNQAVSVAKAMGDFSR 807 (876)
T ss_dssp HHHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTHH
T ss_pred HHHHHHHHHHHHHHhcCCCccCchhhhhhhhHHHhhHHhhhhhHHHHHHHHHHHHHHHHHHhcCchhH
Confidence 88999999988866554 3455544 567899999999999999999988777874
No 134
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=46.23 E-value=18 Score=34.29 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=24.0
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
|||+++.. .||+| ..+++.|.++||+|.++...
T Consensus 1 MkvlVtGa-------tG~iG---~~l~~~L~~~g~~V~~~~R~ 33 (221)
T 3ew7_A 1 MKIGIIGA-------TGRAG---SRILEEAKNRGHEVTAIVRN 33 (221)
T ss_dssp CEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred CeEEEEcC-------CchhH---HHHHHHHHhCCCEEEEEEcC
Confidence 77776643 45665 56778889999999988744
No 135
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=45.86 E-value=2.6e+02 Score=28.60 Aligned_cols=96 Identities=14% Similarity=0.252 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhh--hhHHHhHHHHHhHHHHHHHHHHHHHHHhhhch
Q 004879 145 LYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEA--NIYKLSSEKMQQYNELMQQKMKLLEERLQRSD 222 (725)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (725)
+-.+++.|...|.+.+.....- +-..-++|+.+++-.-+.+.+. .+++--+.....+...++|++..+-.++.+.-
T Consensus 152 l~~~~e~L~~ql~~~a~~L~~~--l~~~~eeLr~~L~p~ae~lr~~l~~~~e~l~~~l~~~~~~~~qq~e~f~~~~~p~~ 229 (273)
T 3s84_A 152 LNHQLEGLTFQMKKNAEELKAR--ISASAEELRQRLAPLAEDVRGNLRGNTEGLQKSLAELGGHLDQQVEEFRRRVEPYG 229 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhH
Confidence 3445555555554433222221 1223356666665544444330 12333355666677778888887777766554
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 004879 223 EEIHSYVQLYQESVKEFQDTLHS 245 (725)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~ 245 (725)
+..+..+ .+.+++++..|..
T Consensus 230 e~~~~~l---~~~~e~l~~~l~~ 249 (273)
T 3s84_A 230 ENFNKAL---VQQMEQLRQKLGP 249 (273)
T ss_dssp HHHHHHH---HHHHHHHHHHHSC
T ss_pred HHHHHHH---HHHHHHHHHHhCc
Confidence 4444432 3445555555533
No 136
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=45.35 E-value=27 Score=38.29 Aligned_cols=12 Identities=33% Similarity=0.451 Sum_probs=5.2
Q ss_pred HHhhHHHHHhhh
Q 004879 114 LESSLKELESKL 125 (725)
Q Consensus 114 ~~~~~~~~~~~~ 125 (725)
+++.|++||..+
T Consensus 36 V~~~l~~LE~~l 47 (409)
T 1m1j_C 36 TDGELLEIEGLL 47 (409)
T ss_dssp HHHHHHHHHHHH
T ss_pred chhHHHHHHHHH
Confidence 444444444433
No 137
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}
Probab=45.20 E-value=30 Score=38.30 Aligned_cols=34 Identities=35% Similarity=0.313 Sum_probs=25.4
Q ss_pred CCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 332 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 332 ~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
+|+|+++ ||.|.+-..|+++|.+.||+|.++.-.
T Consensus 147 ~m~VLVT----------GatG~IG~~l~~~L~~~G~~V~~l~R~ 180 (516)
T 3oh8_A 147 PLTVAIT----------GSRGLVGRALTAQLQTGGHEVIQLVRK 180 (516)
T ss_dssp CCEEEEE----------STTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEE----------CCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 7898876 444444456788899999999998754
No 138
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=45.10 E-value=19 Score=31.48 Aligned_cols=32 Identities=31% Similarity=0.464 Sum_probs=23.0
Q ss_pred CCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Q 004879 332 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 332 ~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP 374 (725)
.|+|+++. . |.+-..+++.|.+.||+|.++..
T Consensus 4 ~m~i~IiG--------~---G~iG~~~a~~L~~~g~~v~~~d~ 35 (140)
T 1lss_A 4 GMYIIIAG--------I---GRVGYTLAKSLSEKGHDIVLIDI 35 (140)
T ss_dssp -CEEEEEC--------C---SHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEEC--------C---CHHHHHHHHHHHhCCCeEEEEEC
Confidence 48888773 2 44445678889999999998864
No 139
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=44.85 E-value=19 Score=34.30 Aligned_cols=32 Identities=22% Similarity=0.425 Sum_probs=23.2
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP 374 (725)
|||+++.. .||+| ..++++|.++||+|.++..
T Consensus 1 MkilVtGa-------tG~iG---~~l~~~L~~~g~~V~~~~R 32 (224)
T 3h2s_A 1 MKIAVLGA-------TGRAG---SAIVAEARRRGHEVLAVVR 32 (224)
T ss_dssp CEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEEcC-------CCHHH---HHHHHHHHHCCCEEEEEEe
Confidence 67666532 35555 5678888999999998864
No 140
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=44.83 E-value=1.4e+02 Score=24.97 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=9.8
Q ss_pred chhhhhhHHHHHHHHHHHHHHHhh
Q 004879 138 LKVECKDLYEKVENLQGLLAKATK 161 (725)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~ 161 (725)
|+.|.-++-++++.++.-|..+.+
T Consensus 11 lk~e~d~a~~~~~~~e~~l~~~e~ 34 (81)
T 1ic2_A 11 LKLDKENALDRAEQAEADKKAAEE 34 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444333
No 141
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=44.73 E-value=1.6e+02 Score=25.87 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHh
Q 004879 223 EEIHSYVQLYQESVKEFQDTLHSLKEE 249 (725)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (725)
....++-++++..|.+|+.+-..-++.
T Consensus 95 ~q~~~L~~kf~e~m~~y~~~q~~yre~ 121 (127)
T 1ez3_A 95 TQHSTLSRKFVEVMSEYNATQSDYRER 121 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577788888888888755444433
No 142
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=44.39 E-value=63 Score=29.14 Aligned_cols=95 Identities=24% Similarity=0.339 Sum_probs=0.0
Q ss_pred cccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhh
Q 004879 64 SEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECK 143 (725)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (725)
.+|..|-.+++.+..||..|.-++..++..+.+++. +.|.|.+. -..+|+.+.....|+....-.+++
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~------KyE~E~~~----r~~~E~di~~lrK~lD~~~l~r~d-- 87 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE------KLQEEMLQ----REEAENTLQSFRQDVDNASLARLD-- 87 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhHHHHHH----HHHHHHHHHHhhhcccHHHHHHHH--
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHhh
Q 004879 144 DLYEKVENLQGLLAKATKQADQAISVLQ 171 (725)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (725)
|-.+|+.|+.=|+-..+--++=+..|+
T Consensus 88 -LE~~iesL~eEl~FLKk~heeEl~eLq 114 (119)
T 3ol1_A 88 -LERKVESLQEEIAFLKKLHEEEIQELQ 114 (119)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 143
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=44.19 E-value=21 Score=39.18 Aligned_cols=38 Identities=29% Similarity=0.365 Sum_probs=29.6
Q ss_pred CCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 332 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 332 ~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
++||+++.. | ..|=-.-...|++.|+++||+|+++++.
T Consensus 8 ~~~vl~~p~---p---~~GHi~P~l~La~~L~~rG~~VT~v~t~ 45 (482)
T 2pq6_A 8 KPHVVMIPY---P---VQGHINPLFKLAKLLHLRGFHITFVNTE 45 (482)
T ss_dssp CCEEEEECC---S---SHHHHHHHHHHHHHHHHTTCEEEEEEEH
T ss_pred CCEEEEecC---c---cchhHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 469988863 2 2455566778999999999999999866
No 144
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0
Probab=44.00 E-value=20 Score=37.03 Aligned_cols=41 Identities=20% Similarity=0.198 Sum_probs=30.2
Q ss_pred CCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 004879 330 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDC 378 (725)
Q Consensus 330 ~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~ 378 (725)
.+.||||+....-. .+.-+..|.++|.+ +|+|.|+.|....
T Consensus 9 ~~~m~ILlTNDDGi-------~apGi~aL~~~l~~-~~~V~VVAP~~~~ 49 (261)
T 3ty2_A 9 TPKLRLLLSNDDGV-------YAKGLAILAKTLAD-LGEVDVVAPDRNR 49 (261)
T ss_dssp --CCEEEEECSSCT-------TCHHHHHHHHHHTT-TSEEEEEEESSCC
T ss_pred CCCCeEEEEcCCCC-------CCHHHHHHHHHHHh-cCCEEEEecCCCC
Confidence 45699999988532 24557788899877 7899999998554
No 145
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=43.68 E-value=8.1 Score=42.81 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=27.0
Q ss_pred CCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Q 004879 331 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVL 373 (725)
Q Consensus 331 ~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VIt 373 (725)
+.|||+++ |.|.+-+.|++.|...||+|.||=
T Consensus 2 ~~M~iiI~-----------G~G~vG~~la~~L~~~~~~v~vId 33 (461)
T 4g65_A 2 NAMKIIIL-----------GAGQVGGTLAENLVGENNDITIVD 33 (461)
T ss_dssp CCEEEEEE-----------CCSHHHHHHHHHTCSTTEEEEEEE
T ss_pred CcCEEEEE-----------CCCHHHHHHHHHHHHCCCCEEEEE
Confidence 46998887 446777889999999999999994
No 146
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=43.52 E-value=26 Score=34.72 Aligned_cols=37 Identities=27% Similarity=0.395 Sum_probs=28.5
Q ss_pred CCCeEEEEcCccCCCCCCCcHH--HHHHHHHHHHHHCCCeEEEEe
Q 004879 331 SGLHVIHIAAEMAPVAKVGGLG--DVVAGLGKALQKKGHLVEIVL 373 (725)
Q Consensus 331 ~~MkILhIs~E~~P~~kvGGlg--~vV~~LaraL~~~GHeV~VIt 373 (725)
++|+|+.|+. ..||.| +.+..|+.+|++.|+.|.+|=
T Consensus 4 ~~~~vI~v~s------~kGGvGKTt~a~~LA~~la~~g~~VlliD 42 (257)
T 1wcv_1 4 AKVRRIALAN------QKGGVGKTTTAINLAAYLARLGKRVLLVD 42 (257)
T ss_dssp -CCCEEEECC------SSCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEEe------CCCCchHHHHHHHHHHHHHHCCCCEEEEE
Confidence 4578888865 257776 566779999999999999984
No 147
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=43.28 E-value=25 Score=32.76 Aligned_cols=33 Identities=15% Similarity=0.148 Sum_probs=23.3
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
|+|+++.. .||+| ..++++|.+.||+|.++...
T Consensus 4 ~~ilVtGa-------tG~iG---~~l~~~l~~~g~~V~~~~r~ 36 (206)
T 1hdo_A 4 KKIAIFGA-------TGQTG---LTTLAQAVQAGYEVTVLVRD 36 (206)
T ss_dssp CEEEEEST-------TSHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEEcC-------CcHHH---HHHHHHHHHCCCeEEEEEeC
Confidence 67776532 35554 56788888999999988643
No 148
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=43.16 E-value=1.8e+02 Score=27.04 Aligned_cols=13 Identities=23% Similarity=0.570 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHH
Q 004879 144 DLYEKVENLQGLL 156 (725)
Q Consensus 144 ~~~~~~~~~~~~~ 156 (725)
++++++..|...+
T Consensus 8 ~I~d~A~eL~~aI 20 (151)
T 2pih_A 8 DIVQQARNLAKMI 20 (151)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4566666655544
No 149
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=42.60 E-value=1.1e+02 Score=25.13 Aligned_cols=46 Identities=26% Similarity=0.372 Sum_probs=31.9
Q ss_pred hhhhHHHHHHHHHHHHhHhhhh-hHHHhHHHHHhHHHHHHHHHHHHHHHhh
Q 004879 170 LQQNQELRKKVDKLEESLDEAN-IYKLSSEKMQQYNELMQQKMKLLEERLQ 219 (725)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (725)
.+||.||..|||.-.+.+++-| |-.-++-++-.|.++++ -||++.+
T Consensus 2 IkQNKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnK----KLe~~~~ 48 (74)
T 2q6q_A 2 VQQNKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITK----KLEDQNL 48 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 5799999999998877776655 34556667777777775 3555443
No 150
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=42.46 E-value=20 Score=39.62 Aligned_cols=40 Identities=25% Similarity=0.182 Sum_probs=28.9
Q ss_pred CCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHC-CCeEEEEeeCC
Q 004879 331 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKK-GHLVEIVLPKY 376 (725)
Q Consensus 331 ~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~-GHeV~VItP~y 376 (725)
++|||++++. | ..|=-.-...|++.|+++ ||+|+++++..
T Consensus 5 ~~~~vl~~p~---p---~~GHv~P~l~La~~L~~r~Gh~Vt~~t~~~ 45 (480)
T 2vch_A 5 KTPHVAIIPS---P---GMGHLIPLVEFAKRLVHLHGLTVTFVIAGE 45 (480)
T ss_dssp -CCEEEEECC---S---CHHHHHHHHHHHHHHHHHHCCEEEEEECCS
T ss_pred CCcEEEEecC---c---chhHHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence 4478888853 1 233345567899999998 99999998764
No 151
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=42.16 E-value=62 Score=32.35 Aligned_cols=91 Identities=14% Similarity=0.197 Sum_probs=63.0
Q ss_pred hhhHhhhhhhhhhc-cchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHH
Q 004879 68 SFSKELDSLKTENL-SLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLY 146 (725)
Q Consensus 68 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (725)
....+++..|..++ .+|+.|++-|++- .+.+..+-++..-||-..|+.....+|.+...+++=-..| |.|
T Consensus 88 ~i~~~ln~~r~~~i~~lk~~Ie~~k~~q-~~~~~~~~Lf~~~kEn~al~lEa~yre~~~~v~~EvK~rL--------Dy~ 158 (214)
T 2cly_A 88 QKIAQLEEVKQASIKQIQDAIDMEKSQQ-ALVQKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRL--------DYH 158 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH
Confidence 34455666666554 5777888777665 5788889999999999999999999999888887765555 456
Q ss_pred HHHHHHH------HHHHHHhhhhhhHH
Q 004879 147 EKVENLQ------GLLAKATKQADQAI 167 (725)
Q Consensus 147 ~~~~~~~------~~~~~~~~~~~~~~ 167 (725)
=.+|+.+ +|.+...+.+.+++
T Consensus 159 v~~e~~~r~~eQ~~mv~wV~~~V~k~i 185 (214)
T 2cly_A 159 ISVQNMMRQKEQEHMINWVEKRVVQSI 185 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6666654 34444444555544
No 152
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=41.57 E-value=85 Score=29.39 Aligned_cols=58 Identities=16% Similarity=0.255 Sum_probs=45.0
Q ss_pred hhHHHhHHHHHHHHHHHhhcccCcccchhhhhccCCCccchhcccCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhh
Q 004879 18 IHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSV 97 (725)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (725)
.+|+=|.|-+|.||...++||+. |.-..+.++..+=..++.+++.|+.-+...
T Consensus 28 tkVDDLQD~VE~LRkDV~~Rgvr---------------------------P~~~ql~~v~kdi~~a~~eL~~m~~~i~~e 80 (141)
T 3okq_A 28 SKVDDLQDVIEIMRKDVAERRSQ---------------------------PAKKKLETVSKDLENAQADVLKLQEFIDTE 80 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCC---------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHcCCC---------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 36888999999999999999988 336677777777777777777777777666
Q ss_pred hhhhh
Q 004879 98 KDADE 102 (725)
Q Consensus 98 ~~~~~ 102 (725)
+.+=+
T Consensus 81 kP~WK 85 (141)
T 3okq_A 81 KPHWK 85 (141)
T ss_dssp HHHHH
T ss_pred CchhH
Confidence 65544
No 153
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=41.55 E-value=1.7e+02 Score=32.50 Aligned_cols=23 Identities=13% Similarity=0.371 Sum_probs=16.0
Q ss_pred hccchhHHHHHHHHhhhhhhhhh
Q 004879 80 NLSLKNDIKVLKAELNSVKDADE 102 (725)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~ 102 (725)
....|.||+.|+..|.++.+...
T Consensus 90 e~~V~~dl~~Le~~l~~isn~Ts 112 (461)
T 3ghg_B 90 ERPIRNSVDELNNNVEAVSQTSS 112 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHhhhH
Confidence 34467788888777777766655
No 154
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=41.43 E-value=12 Score=24.82 Aligned_cols=27 Identities=41% Similarity=0.589 Sum_probs=20.7
Q ss_pred hhhhhhhhhccchhHHHHHHHHhhhhh
Q 004879 72 ELDSLKTENLSLKNDIKVLKAELNSVK 98 (725)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (725)
|++.|.-||-.|.+.|.+||+++.+.+
T Consensus 1 eidalefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 1 EIDALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHhccHHHHHHHHHHHHHHHHhc
Confidence 356677788888888999988876543
No 155
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=41.20 E-value=3.9e+02 Score=29.27 Aligned_cols=27 Identities=19% Similarity=0.113 Sum_probs=16.1
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHh
Q 004879 68 SFSKELDSLKTENLSLKNDIKVLKAEL 94 (725)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (725)
++..-++.++.|...+-+.-..+-..|
T Consensus 78 tl~~aw~~~~~e~e~~a~~H~~~a~~L 104 (486)
T 3haj_A 78 TVEKAWMAFMSEAERVSELHLEVKASL 104 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666665555555555555
No 156
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=41.19 E-value=1.1e+02 Score=30.38 Aligned_cols=72 Identities=14% Similarity=0.147 Sum_probs=47.9
Q ss_pred cchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHH
Q 004879 82 SLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAK 158 (725)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (725)
+-+++|+.+..+....++.|+....+..-+..+++-+-.+|+.+.. .-.++++ .|...+-++++.+...|+.
T Consensus 119 Ls~eeI~~m~~~a~~~~~eD~~~r~~~e~kn~le~~i~~~~~~l~~---~~~~l~~--~~k~~i~~~l~~~~~~L~~ 190 (219)
T 4e81_A 119 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEE---AGDKLPA--DDKTAIESALTALETALKG 190 (219)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HGGGSCH--HHHHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhCCH--HHHHHHHHHHHHHHHHHhc
Confidence 3478899999998888998988888877788888888888887764 1122322 1222444555555555543
No 157
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=40.62 E-value=29 Score=31.19 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=25.3
Q ss_pred CCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 332 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 332 ~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
..||+++ |.|.+-..+++.|.+.|++|.++-..
T Consensus 7 ~~~viIi-----------G~G~~G~~la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 7 CNHALLV-----------GYGRVGSLLGEKLLASDIPLVVIETS 39 (140)
T ss_dssp CSCEEEE-----------CCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCCEEEE-----------CcCHHHHHHHHHHHHCCCCEEEEECC
Confidence 3477776 33667778889999999999999644
No 158
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=40.41 E-value=29 Score=31.49 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 352 GDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 352 g~vV~~LaraL~~~GHeV~VItP~ 375 (725)
|.+-..+++.|.+.||+|.++.+.
T Consensus 12 G~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 12 SILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CHHHHHHHHHHHHCCCCEEEEECC
Confidence 667788899999999999999754
No 159
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=39.92 E-value=2.3e+02 Score=26.19 Aligned_cols=94 Identities=28% Similarity=0.392 Sum_probs=55.2
Q ss_pred cchhHHHHHHHHhhhhhhhhhHH-HHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHh
Q 004879 82 SLKNDIKVLKAELNSVKDADERV-VMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKAT 160 (725)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (725)
.|++|.+++..++.+.++.-+-+ .||+.|+-. +..|-++-..-|..++ .|.-|-..+..+.+.-+.+|.+-
T Consensus 15 ~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgK----VDQlqKRn~~HQKEi~---~Lrae~~~~QRn~~K~~~~Lkrn- 86 (167)
T 4gkw_A 15 DLKQDTESLQKQLEENQEELEIVGNMLREEQGK----VDQLQKRNVAHQKEIG---KLRAELGTAQRNLEKADQLLKRN- 86 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHhccHHHHHHH---HHHHHHHHHHHhHHHHHHHHHhh-
Confidence 47788888888888776654444 456666643 4456666665555443 34444444444444444444441
Q ss_pred hhhhhHHHHhhhhHHH--HHHHHHHHHhHhhhh
Q 004879 161 KQADQAISVLQQNQEL--RKKVDKLEESLDEAN 191 (725)
Q Consensus 161 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 191 (725)
.+||||.- -+|+..||+-|+|-+
T Consensus 87 --------~~qQnQQSlDiRKLrELEADLKEKD 111 (167)
T 4gkw_A 87 --------SQQQNQQSLDMRKLGELEADLKEKD 111 (167)
T ss_dssp --------HHHHHHHHHHHHHTHHHHHTHHHHH
T ss_pred --------hHHHhHhhhhHHHHHHHHhHHhhhh
Confidence 34555432 257788888888765
No 160
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=39.90 E-value=1.1e+02 Score=35.77 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=17.0
Q ss_pred hhhhhhhHHHHHHhhhhhHHhhHHHHH
Q 004879 96 SVKDADERVVMLEMERSSLESSLKELE 122 (725)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (725)
+.-+.|.++..+++||..|-..|+..-
T Consensus 11 dl~~i~~~i~~~~~~r~~l~~~~~~~~ 37 (706)
T 3fhn_A 11 DLLNINDRIKQVQNERNELASKLQNLK 37 (706)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334566677777777777666665443
No 161
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=39.03 E-value=1.2e+02 Score=26.45 Aligned_cols=67 Identities=22% Similarity=0.316 Sum_probs=46.9
Q ss_pred HHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHH
Q 004879 104 VVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKL 183 (725)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (725)
+...|+.-...+..+.++|..+.. ++.-+.++| |+|.....++-+--+.+-.+=+.++..|+++
T Consensus 14 v~~fe~rL~~Yr~~IeelE~~L~s-~s~~~~~Tp---------------q~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~ 77 (93)
T 3t98_B 14 VQQFEVQLQQYRQQIEELENHLAT-QANNSHITP---------------QDLSMAMQKIYQTFVALAAQLQSIHENVKVL 77 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC-HHHHTTSCH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-ccCCCCCCH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556677888888888776 332233333 6667777777777888888889999999998
Q ss_pred HHh
Q 004879 184 EES 186 (725)
Q Consensus 184 ~~~ 186 (725)
++-
T Consensus 78 Ke~ 80 (93)
T 3t98_B 78 KEQ 80 (93)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 162
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=38.95 E-value=2.7e+02 Score=30.89 Aligned_cols=15 Identities=20% Similarity=0.496 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHHh
Q 004879 172 QNQELRKKVDKLEES 186 (725)
Q Consensus 172 ~~~~~~~~~~~~~~~ 186 (725)
..++|.++|+.|+.+
T Consensus 101 ~LqeLe~~l~~lsn~ 115 (464)
T 1m1j_B 101 VLRDLKDRVAKFSDT 115 (464)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 356777777777544
No 163
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=38.94 E-value=81 Score=29.80 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhhhH
Q 004879 148 KVENLQGLLAKATKQADQAISVLQQNQ 174 (725)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (725)
.+-.||+.|+....+.-.++-+|+++.
T Consensus 4 rLTQLQd~ldqLa~~f~nsig~Lq~~a 30 (151)
T 1yke_B 4 RLTQLQICLDQMTEQFCATLNYIDKNH 30 (151)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455677777777777777777777544
No 164
>1m3w_A H10H24; four-helix bundle, heme binding, maquette, heme binding protein, electron transport, de novo protein; 2.80A {Synthetic} SCOP: k.8.1.1
Probab=38.73 E-value=40 Score=23.00 Aligned_cols=29 Identities=41% Similarity=0.717 Sum_probs=20.3
Q ss_pred hhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhc
Q 004879 189 EANIYKLSSEKMQQYNELMQQKMKLLEERLQRS 221 (725)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (725)
-+.|||+-.|-+..+.+| +++-||||++.
T Consensus 3 ggeiwklheeflkkfeel----lklheerlkkm 31 (32)
T 1m3w_A 3 GGEIWKLHEEFLKKFEEL----LKLHEERLKKM 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHCC
T ss_pred cchHHHHHHHHHHHHHHH----HHHHHHHHHhc
Confidence 357999998866666555 45677877653
No 165
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=38.40 E-value=28 Score=33.66 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=24.9
Q ss_pred CCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 330 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 330 ~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
..+|+|+++.. .||+|. .+++.|.++||+|.++...
T Consensus 19 l~~~~ilVtGa-------tG~iG~---~l~~~L~~~G~~V~~~~R~ 54 (236)
T 3e8x_A 19 FQGMRVLVVGA-------NGKVAR---YLLSELKNKGHEPVAMVRN 54 (236)
T ss_dssp --CCEEEEETT-------TSHHHH---HHHHHHHHTTCEEEEEESS
T ss_pred cCCCeEEEECC-------CChHHH---HHHHHHHhCCCeEEEEECC
Confidence 34578877643 466665 5678888999999998744
No 166
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=38.33 E-value=22 Score=36.63 Aligned_cols=36 Identities=19% Similarity=0.074 Sum_probs=23.8
Q ss_pred CCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 330 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 330 ~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
+.+|+|+++.. +|++| ..++++|.+.||+|.+++..
T Consensus 8 M~~~~IlVtGa-------tG~iG---~~l~~~L~~~g~~V~~l~R~ 43 (346)
T 3i6i_A 8 SPKGRVLIAGA-------TGFIG---QFVATASLDAHRPTYILARP 43 (346)
T ss_dssp ---CCEEEECT-------TSHHH---HHHHHHHHHTTCCEEEEECS
T ss_pred CCCCeEEEECC-------CcHHH---HHHHHHHHHCCCCEEEEECC
Confidence 44567776643 35555 55677888999999998754
No 167
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=38.02 E-value=26 Score=33.91 Aligned_cols=24 Identities=13% Similarity=-0.021 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHCCCeEEEEee
Q 004879 351 LGDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 351 lg~vV~~LaraL~~~GHeV~VItP 374 (725)
.|.+-..+++.|.+.||+|.++..
T Consensus 8 ~G~~G~~la~~L~~~g~~v~vid~ 31 (218)
T 3l4b_C 8 GETTAYYLARSMLSRKYGVVIINK 31 (218)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCHHHHHHHHHHHhCCCeEEEEEC
Confidence 488888999999999999999964
No 168
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=37.95 E-value=34 Score=29.16 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=21.4
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHH
Q 004879 66 IHSFSKELDSLKTENLSLKNDIKVLKAE 93 (725)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (725)
|-.|-+|++.||++|..|..+.+.++..
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e~~~~ 49 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQNAQHQ 49 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566778888888888888877776653
No 169
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=37.90 E-value=1.6e+02 Score=29.06 Aligned_cols=90 Identities=14% Similarity=0.216 Sum_probs=59.6
Q ss_pred cchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhh
Q 004879 82 SLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATK 161 (725)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (725)
+=+++|+.+..+....++.|+....+..-+..||+-+-+++++|... -.++++- +-..+.++++.++..|+.
T Consensus 116 Ls~eei~~~~~~~~~~~~~D~~~~e~~e~kn~le~~i~~~~~~l~~~---~~~~~~~--~k~~i~~~l~~~~~wl~~--- 187 (227)
T 1u00_A 116 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAAD---AALLSAA--ERQVIDDAAAHLSEVAQG--- 187 (227)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---GGGSCHH--HHHHHHHHHHHHHHHTTS---
T ss_pred CCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhh---hccCCHH--HHHHHHHHHHHHHHHHhc---
Confidence 34678999999999999999888888888888999999999988642 2233322 222455555555555541
Q ss_pred hhhhHHHHhhhhHHHHHHHHHHHHhHh
Q 004879 162 QADQAISVLQQNQELRKKVDKLEESLD 188 (725)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (725)
. .-.++++|.+.|++.+.
T Consensus 188 ~---------d~~~~~~~~~~L~~~~~ 205 (227)
T 1u00_A 188 D---------DVDAIEQAIKNVDKQTQ 205 (227)
T ss_dssp S---------CHHHHHHHHHHHHHHHH
T ss_pred C---------CHHHHHHHHHHHHHHHH
Confidence 1 12456666666666554
No 170
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=37.88 E-value=28 Score=35.40 Aligned_cols=35 Identities=14% Similarity=0.236 Sum_probs=24.5
Q ss_pred CCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 331 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 331 ~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
+.|+|+++ ||.|..-..|++.|.+.||+|.++...
T Consensus 12 ~~M~ilVt----------GatG~iG~~l~~~L~~~g~~V~~~~r~ 46 (342)
T 2x4g_A 12 AHVKYAVL----------GATGLLGHHAARAIRAAGHDLVLIHRP 46 (342)
T ss_dssp CCCEEEEE----------STTSHHHHHHHHHHHHTTCEEEEEECT
T ss_pred cCCEEEEE----------CCCcHHHHHHHHHHHHCCCEEEEEecC
Confidence 34777765 444444456778888899999988754
No 171
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=37.63 E-value=27 Score=35.54 Aligned_cols=37 Identities=27% Similarity=0.189 Sum_probs=23.8
Q ss_pred CCCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 329 ISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 329 ~~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
+.+.|+|++... .|++| ..++++|.+.||+|.++...
T Consensus 11 ~~~~~~vlVTGa-------tG~iG---~~l~~~L~~~g~~V~~~~r~ 47 (335)
T 1rpn_A 11 GSMTRSALVTGI-------TGQDG---AYLAKLLLEKGYRVHGLVAR 47 (335)
T ss_dssp ----CEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEEECC
T ss_pred cccCCeEEEECC-------CChHH---HHHHHHHHHCCCeEEEEeCC
Confidence 456678876632 35555 56778888999999988744
No 172
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=37.19 E-value=23 Score=33.85 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=23.9
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
|||+++.. .||+| ..+++.|.+.||+|.++...
T Consensus 1 M~ilItGa-------tG~iG---~~l~~~L~~~g~~V~~~~R~ 33 (219)
T 3dqp_A 1 MKIFIVGS-------TGRVG---KSLLKSLSTTDYQIYAGARK 33 (219)
T ss_dssp CEEEEEST-------TSHHH---HHHHHHHTTSSCEEEEEESS
T ss_pred CeEEEECC-------CCHHH---HHHHHHHHHCCCEEEEEECC
Confidence 67776632 35555 57788899999999988643
No 173
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=37.06 E-value=33 Score=31.24 Aligned_cols=38 Identities=18% Similarity=0.194 Sum_probs=25.3
Q ss_pred CCCCCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 327 SSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 327 ~~~~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
|...++++|+++. .|.+ -..+++.|.+.|++|.++.+.
T Consensus 14 ~~~~~~~~v~IiG--------~G~i---G~~la~~L~~~g~~V~vid~~ 51 (155)
T 2g1u_A 14 SKKQKSKYIVIFG--------CGRL---GSLIANLASSSGHSVVVVDKN 51 (155)
T ss_dssp ---CCCCEEEEEC--------CSHH---HHHHHHHHHHTTCEEEEEESC
T ss_pred hcccCCCcEEEEC--------CCHH---HHHHHHHHHhCCCeEEEEECC
Confidence 4445668888873 2444 455778888899999988654
No 174
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=36.72 E-value=46 Score=29.47 Aligned_cols=26 Identities=42% Similarity=0.417 Sum_probs=20.7
Q ss_pred hHHHHHHhhhhhHHhhHHHHHhhhhc
Q 004879 102 ERVVMLEMERSSLESSLKELESKLSI 127 (725)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (725)
+.+-.|++|+..|...+..||.++--
T Consensus 19 ~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 19 LKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566888899999999998888865
No 175
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=36.67 E-value=2.8e+02 Score=26.26 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHhHhhh
Q 004879 174 QELRKKVDKLEESLDEA 190 (725)
Q Consensus 174 ~~~~~~~~~~~~~~~~~ 190 (725)
..+++|+++|++-|.+.
T Consensus 111 ~~~e~r~~~L~~ql~e~ 127 (154)
T 2ocy_A 111 YAIEILNKRLTEQLREK 127 (154)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555544
No 176
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=36.64 E-value=5.5e+02 Score=29.60 Aligned_cols=20 Identities=5% Similarity=-0.052 Sum_probs=8.0
Q ss_pred ChHHHHHHHHHHhhhhhccc
Q 004879 263 PWEFWSRLLLIIDGWLLEKK 282 (725)
Q Consensus 263 ~~~~~~~~ll~~d~~~~~~~ 282 (725)
+...|.++...+=++.+++.
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~ 532 (695)
T 2j69_A 513 NSPGWAKWAMGLLSLSKGNL 532 (695)
T ss_dssp CCCHHHHHHHTCCC------
T ss_pred cchhHHHHHHhhcccccCCc
Confidence 34567776654444444443
No 177
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=36.62 E-value=16 Score=25.02 Aligned_cols=27 Identities=37% Similarity=0.502 Sum_probs=13.6
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHH
Q 004879 66 IHSFSKELDSLKTENLSLKNDIKVLKA 92 (725)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (725)
|-.|.+|+..||.|-..||=+|.+||+
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334455555555555555555555543
No 178
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=36.10 E-value=5.8e+02 Score=29.72 Aligned_cols=24 Identities=21% Similarity=0.026 Sum_probs=14.6
Q ss_pred HHHHHhhhhhHHhhHHHHHhhhhc
Q 004879 104 VVMLEMERSSLESSLKELESKLSI 127 (725)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~ 127 (725)
.....+....+++-|.+.|..+..
T Consensus 372 ~~~F~~~~~~~~~Wl~~~e~~l~~ 395 (863)
T 1sjj_A 372 AEKFRQKASIHESWTDGKEAMLQQ 395 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455555566777777776654
No 179
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=36.00 E-value=1.2e+02 Score=26.67 Aligned_cols=85 Identities=18% Similarity=0.239 Sum_probs=53.4
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhh-hhcchhhhhccccchhhhhhHH
Q 004879 68 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESK-LSISQEDVAKLSTLKVECKDLY 146 (725)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 146 (725)
.+.++++.|..++......+..|+.+|.. ...+-...|++++.++.-|.+|=.. |..|+.=|+.- +.++-.+-
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l~e---E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a---r~e~~~~e 82 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDIAK---ENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADA---RKEKYAIE 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 45666667777777766666666665543 3334455667777777777777533 45566655544 45555677
Q ss_pred HHHHHHHHHHHH
Q 004879 147 EKVENLQGLLAK 158 (725)
Q Consensus 147 ~~~~~~~~~~~~ 158 (725)
.|++.|+..|.-
T Consensus 83 ~kn~~L~~qL~d 94 (97)
T 2eqb_B 83 ILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 777777777754
No 180
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=35.82 E-value=2.2e+02 Score=24.69 Aligned_cols=27 Identities=7% Similarity=0.139 Sum_probs=13.7
Q ss_pred HHHHHHhhhhhHHhhHHHHHhhhhcch
Q 004879 103 RVVMLEMERSSLESSLKELESKLSISQ 129 (725)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (725)
.+..|..+++.+++.+.+++..+....
T Consensus 18 ~l~~L~~~~~~l~~~i~~l~~~l~~l~ 44 (112)
T 1l8d_A 18 ERNEITQRIGELKNKIGDLKTAIEELK 44 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444455555555555555554443
No 181
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=35.77 E-value=1.1e+02 Score=25.91 Aligned_cols=20 Identities=40% Similarity=0.639 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHHhHhhhh
Q 004879 172 QNQELRKKVDKLEESLDEAN 191 (725)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~ 191 (725)
.|++|+++|..|+..|+++-
T Consensus 21 rN~~Le~~v~~le~~Le~s~ 40 (79)
T 3cvf_A 21 RNAELEHQLRAMERSLEEAR 40 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 35555555555555555543
No 182
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=35.59 E-value=54 Score=28.20 Aligned_cols=40 Identities=18% Similarity=0.115 Sum_probs=30.2
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHC-CC-eEEEEeeC
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKK-GH-LVEIVLPK 375 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~-GH-eV~VItP~ 375 (725)
||++++... .|+ ....+.....++.++.+. || +|.|+.-.
T Consensus 2 ~k~~ii~~~-~p~--~~~~~~~al~~a~~~~~~~g~~~v~vff~~ 43 (117)
T 1jx7_A 2 QKIVIVANG-APY--GSESLFNSLRLAIALREQESNLDLRLFLMS 43 (117)
T ss_dssp CEEEEEECC-CTT--TCSHHHHHHHHHHHHHHHCTTCEEEEEECG
T ss_pred cEEEEEEcC-CCC--CcHHHHHHHHHHHHHHhcCCCccEEEEEEc
Confidence 378888764 565 345567788999999999 99 99998743
No 183
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=35.48 E-value=78 Score=36.01 Aligned_cols=90 Identities=13% Similarity=0.175 Sum_probs=57.6
Q ss_pred cchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhh
Q 004879 82 SLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATK 161 (725)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (725)
+-+++|+.+..+....++.|+....+..-|..||+-+-++++++.. .-.++++ .|-..+.++++.++..|+.
T Consensus 507 ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~l~~---~~~~~~~--~~~~~i~~~~~~~~~~l~~--- 578 (605)
T 2kho_A 507 LNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVEE---AGDKLPA--DDKTAIESALTALETALKG--- 578 (605)
T ss_dssp CCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HGGGSCH--HHHHHHHHHHHHHHHHTTS---
T ss_pred CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhccCCH--HHHHHHHHHHHHHHHHHhc---
Confidence 4478899999999999998988888888888899999999888854 1112222 2222344444444444431
Q ss_pred hhhhHHHHhhhhHHHHHHHHHHHHhHh
Q 004879 162 QADQAISVLQQNQELRKKVDKLEESLD 188 (725)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (725)
+ .-.++++|.+.|++.+.
T Consensus 579 ~---------~~~~~~~~~~~l~~~~~ 596 (605)
T 2kho_A 579 E---------DKAAIEAKMQELAQVSQ 596 (605)
T ss_dssp S---------CHHHHHHHHHHHHTTCH
T ss_pred C---------CHHHHHHHHHHHHHHHH
Confidence 1 22456666666665543
No 184
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=35.00 E-value=44 Score=30.98 Aligned_cols=37 Identities=24% Similarity=0.255 Sum_probs=30.0
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP 374 (725)
|||+++... ..|....++..+++.|...|++|.++-.
T Consensus 1 Mkv~IvY~S-----~tGnT~~~A~~ia~~l~~~g~~v~~~~~ 37 (161)
T 3hly_A 1 MSVLIGYLS-----DYGYSDRLSQAIGRGLVKTGVAVEMVDL 37 (161)
T ss_dssp -CEEEEECT-----TSTTHHHHHHHHHHHHHHTTCCEEEEET
T ss_pred CEEEEEEEC-----CChHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 788887543 2699999999999999999999988853
No 185
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=34.94 E-value=3.4e+02 Score=26.72 Aligned_cols=6 Identities=17% Similarity=0.623 Sum_probs=2.9
Q ss_pred HHHHHH
Q 004879 290 LLREMV 295 (725)
Q Consensus 290 ~~~~~~ 295 (725)
+++..+
T Consensus 252 D~~~fi 257 (276)
T 2v0o_A 252 LIQKFA 257 (276)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555533
No 186
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=34.92 E-value=3.3e+02 Score=26.61 Aligned_cols=128 Identities=22% Similarity=0.247 Sum_probs=81.4
Q ss_pred ccchhhHhhhhhhhhhccchhHHHHHHHHhhhhh----------hhh---hHHHHHHhhhhh---HHhhHHHHHhhhhcc
Q 004879 65 EIHSFSKELDSLKTENLSLKNDIKVLKAELNSVK----------DAD---ERVVMLEMERSS---LESSLKELESKLSIS 128 (725)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 128 (725)
.|-+++.-+.+|++|-..|.+|++.-.+-..+|. +-+ -++-.|+|=-++ |-+-|...|..|...
T Consensus 20 Li~~L~~kL~~L~~eqe~l~ee~~~N~~lG~~vea~V~~~c~P~E~eKy~~FigDLekVv~LLLsLs~RLaRvenaL~~~ 99 (190)
T 3thf_A 20 LIKHLNQKIVSLKREQQTISEECSANDRLGQDLFAKLAEKVRPSEASKFRTHVDAVGNITSLLLSLSERLAQTESSLETR 99 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHccC
Confidence 4557788888888888777777765433333221 111 122233333332 455556666655421
Q ss_pred hhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHH
Q 004879 129 QEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQ 208 (725)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (725)
..|=..|-+|-+-|.. |-+.| ++|..-+|+-+..+.+.=-.-|..|-.+.|-++.+
T Consensus 100 ----------~~Er~sL~~K~~~L~~-------Q~EDA-------keLKe~ldRRe~~V~~iL~~~L~~eql~DY~~fv~ 155 (190)
T 3thf_A 100 ----------QQERGALESKRDLLYE-------QMEEA-------QRLKSDIERRGVSIAGLLAKNLSADMCADYDYFIN 155 (190)
T ss_dssp ----------HHHHHHHHHHHHHHHH-------HHHHH-------HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred ----------hhHHHHHHHHHHHHHH-------HHHHH-------HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2232334444444443 33334 67888899999999988889999999999999999
Q ss_pred HHHHHHHH
Q 004879 209 QKMKLLEE 216 (725)
Q Consensus 209 ~~~~~~~~ 216 (725)
-|-+++-|
T Consensus 156 mKa~Ll~e 163 (190)
T 3thf_A 156 MKAKLIAD 163 (190)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999888
No 187
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=34.84 E-value=1e+02 Score=28.97 Aligned_cols=69 Identities=22% Similarity=0.322 Sum_probs=38.6
Q ss_pred HhhHHHHHhhhhcch------hhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHh
Q 004879 115 ESSLKELESKLSISQ------EDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLD 188 (725)
Q Consensus 115 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (725)
+.||..|++++..-+ --.-+ .|-.|.-+..+..+..-+.+..+-+..+.| =+..+++++|++.++.-|.
T Consensus 19 ~~Sl~qL~nrla~~~am~~sqqq~~e--qlS~eFqtal~eAq~Atd~ye~ai~n~~sA---~~~~d~lekKl~~aq~kL~ 93 (158)
T 3tul_A 19 DVSLSQLESRLAVWQAMIESQKEMGI--QVSKEFQTALGEAQEATDLYEASIKKTDTA---KSVYDAATKKLTQAQNKLQ 93 (158)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHTC----CCTHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcccchH---HHHHHHHHHHHHHHHHHHh
Confidence 567778888776543 22222 222333355566666666666555554444 2335678888887776664
No 188
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=34.79 E-value=3.6e+02 Score=26.91 Aligned_cols=88 Identities=15% Similarity=0.115 Sum_probs=41.0
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHh-hhh-hhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhH
Q 004879 68 SFSKELDSLKTENLSLKNDIKVLKAEL-NSV-KDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDL 145 (725)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (725)
++..-+..+..|...+-+.-..+-..| .++ ..........++.|.........++..+..+..++.|. +-.+...
T Consensus 73 t~~~aw~~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~Ka---K~~Y~~~ 149 (305)
T 2efl_A 73 TSCKAFISNLNEMNDYAGQHEVISENMASQIIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESS---KRRFERD 149 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 444555666666544444444444444 232 23333444455555555555555555555444444332 2223334
Q ss_pred HHHHHHHHHHHHH
Q 004879 146 YEKVENLQGLLAK 158 (725)
Q Consensus 146 ~~~~~~~~~~~~~ 158 (725)
...+|.++.-..+
T Consensus 150 ~~e~e~a~~~~~~ 162 (305)
T 2efl_A 150 CKEADRAQQYFEK 162 (305)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 189
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=34.74 E-value=3e+02 Score=26.04 Aligned_cols=68 Identities=18% Similarity=0.300 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 004879 171 QQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKE 248 (725)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (725)
+.-..+..++..|..-|+++...--|.+. ++.-||..++++.+++.+.=.+|...-++.-.||..|.+
T Consensus 70 qrEd~yEeqIk~L~~kLKEAE~RAE~AER----------sv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~ 137 (155)
T 2efr_A 70 QKEDKYEEEIKVLSDKLKEAETRAEFAER----------SVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEE 137 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455666777777777776665555442 233333344444444444444455454444455555544
No 190
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=34.57 E-value=17 Score=29.17 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=26.4
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhh
Q 004879 66 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVK 98 (725)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (725)
+-.|..+.+.|..+|..|+..|..|+.++...+
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778888999999999999988888776554
No 191
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=34.32 E-value=24 Score=39.17 Aligned_cols=20 Identities=20% Similarity=0.547 Sum_probs=14.3
Q ss_pred HHHhHHHHHHHHHHHhhccc
Q 004879 20 VELLEDQLQKLQHELTHRGV 39 (725)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~ 39 (725)
+.++-+..+.++.-|..|+.
T Consensus 4 ~~~~r~n~~~~~~~~~~R~~ 23 (455)
T 2dq0_A 4 IKLIRENPELVKNDLIKRGE 23 (455)
T ss_dssp HHHHHHCHHHHHHHHHHHTC
T ss_pred HHHHHhCHHHHHHHHHHhCC
Confidence 44566677888888888765
No 192
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=34.21 E-value=42 Score=33.90 Aligned_cols=35 Identities=20% Similarity=0.136 Sum_probs=23.9
Q ss_pred CCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Q 004879 330 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 330 ~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP 374 (725)
.++|+|++... .|++| ..+++.|.+.||+|.++..
T Consensus 9 ~~~~~vlVTGa-------tG~iG---~~l~~~L~~~g~~V~~~~r 43 (342)
T 1y1p_A 9 PEGSLVLVTGA-------NGFVA---SHVVEQLLEHGYKVRGTAR 43 (342)
T ss_dssp CTTCEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CCCCEEEEECC-------ccHHH---HHHHHHHHHCCCEEEEEeC
Confidence 44567766532 35555 5677888899999988763
No 193
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=33.96 E-value=24 Score=39.59 Aligned_cols=15 Identities=20% Similarity=0.260 Sum_probs=9.1
Q ss_pred HHHHHHHHHhhcccC
Q 004879 26 QLQKLQHELTHRGVS 40 (725)
Q Consensus 26 ~~~~~~~~~~~~~~~ 40 (725)
..+.++.-|..|+.+
T Consensus 14 n~~~v~~~~~~R~~~ 28 (485)
T 3qne_A 14 DPEIIKASQKKRGDS 28 (485)
T ss_dssp CHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHcCCC
Confidence 456666666666543
No 194
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=33.67 E-value=3.5e+02 Score=26.45 Aligned_cols=43 Identities=16% Similarity=0.322 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 004879 202 QYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKE 248 (725)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (725)
..+.-++.++.-||- .|+......+....|++.|..-|+...+
T Consensus 102 ~~~~~l~~~ireLEq----~NDdlEr~~R~~~~SleD~e~kln~aiE 144 (189)
T 2v71_A 102 AIKEQLHKYVRELEQ----ANDDLERAKRATIMSLEDFEQRLNQAIE 144 (189)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HhhHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345677777777776 4555555556667778888887777443
No 195
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=33.34 E-value=2.4e+02 Score=24.43 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=5.9
Q ss_pred hhHHHHHHHHhh
Q 004879 84 KNDIKVLKAELN 95 (725)
Q Consensus 84 ~~~~~~~~~~~~ 95 (725)
|.-|++||.+..
T Consensus 8 KkKm~~lk~e~e 19 (101)
T 3u59_A 8 KKKMQMLKLDKE 19 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444555555443
No 196
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=33.30 E-value=51 Score=29.21 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=31.9
Q ss_pred CCCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 004879 329 ISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDC 378 (725)
Q Consensus 329 ~~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~ 378 (725)
..+.|||+.+|.. .++.+..+..+-++..++|.+|.+..-.++.
T Consensus 3 ~~~~mkIlL~C~a------GmSTsllv~km~~~a~~~gi~v~i~a~~~~~ 46 (108)
T 3nbm_A 3 ASKELKVLVLCAG------SGTSAQLANAINEGANLTEVRVIANSGAYGA 46 (108)
T ss_dssp --CCEEEEEEESS------SSHHHHHHHHHHHHHHHHTCSEEEEEEETTS
T ss_pred cccCceEEEECCC------CCCHHHHHHHHHHHHHHCCCceEEEEcchHH
Confidence 3467999999972 3455667777888888899999998744443
No 197
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=33.25 E-value=30 Score=34.33 Aligned_cols=37 Identities=16% Similarity=-0.055 Sum_probs=28.8
Q ss_pred CeEEEEcCccCCCCCCCcHHHH--HHHHHHHHHHCCCeEEEEeeCCC
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDV--VAGLGKALQKKGHLVEIVLPKYD 377 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~v--V~~LaraL~~~GHeV~VItP~y~ 377 (725)
+||+... +||.+.| ..+|.+.|.+.|++|+||...-.
T Consensus 6 k~Illgi--------TGsiaayk~~~~ll~~L~~~g~eV~vv~T~~A 44 (207)
T 3mcu_A 6 KRIGFGF--------TGSHCTYEEVMPHLEKLIAEGAEVRPVVSYTV 44 (207)
T ss_dssp CEEEEEE--------CSCGGGGTTSHHHHHHHHHTTCEEEEEECC--
T ss_pred CEEEEEE--------EChHHHHHHHHHHHHHHHhCCCEEEEEEehHH
Confidence 4777664 4777777 78999999999999999986533
No 198
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=32.42 E-value=71 Score=32.85 Aligned_cols=26 Identities=4% Similarity=-0.072 Sum_probs=21.0
Q ss_pred HHHHhcCeEEEcCCcccchHHHHHHcCCCcc
Q 004879 679 PILLSSFSFLRKHIFNICNLYIKLGQGGDLT 709 (725)
Q Consensus 679 ~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~ 709 (725)
.+|++||++|.+ .|.|..|++.++.|
T Consensus 221 ~~m~~aDlvI~~-----gG~T~~E~~~~g~P 246 (282)
T 3hbm_A 221 KLMNESNKLIIS-----ASSLVNEALLLKAN 246 (282)
T ss_dssp HHHHTEEEEEEE-----SSHHHHHHHHTTCC
T ss_pred HHHHHCCEEEEC-----CcHHHHHHHHcCCC
Confidence 899999999994 47899998755444
No 199
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=32.33 E-value=31 Score=35.31 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=22.8
Q ss_pred CCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 330 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 330 ~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
.++|+|+++ ||.|.+-..|++.|.+.||+|.++...
T Consensus 17 ~~~~~vlVt----------GatG~iG~~l~~~L~~~G~~V~~~~r~ 52 (347)
T 4id9_A 17 RGSHMILVT----------GSAGRVGRAVVAALRTQGRTVRGFDLR 52 (347)
T ss_dssp ----CEEEE----------TTTSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cCCCEEEEE----------CCCChHHHHHHHHHHhCCCEEEEEeCC
Confidence 445777765 444444456778899999999988643
No 200
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=32.07 E-value=39 Score=36.83 Aligned_cols=61 Identities=25% Similarity=0.409 Sum_probs=49.8
Q ss_pred cccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 004879 64 SEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSI 127 (725)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (725)
+.+..+.+|+..|+++...|+.+|+.++.++.+. .+.+..-|.+|..|-..+.||.....+
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~rr~l~n~~~elkgnIrV 63 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKEL---NEILIKEETVRRTLHNELQELRGNIRV 63 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHCSEEE
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCCCeEE
Confidence 3567889999999999999999999999877655 577888899999999999988766544
No 201
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=31.91 E-value=1.1e+02 Score=26.68 Aligned_cols=70 Identities=29% Similarity=0.326 Sum_probs=40.5
Q ss_pred HHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHH
Q 004879 120 ELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKL 195 (725)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (725)
-|+.+|..||+....-..----| =.-|.+|.+-|++-..|..+. ..+-++|+.++..|...|.++.+-|.
T Consensus 22 lLq~qLT~Aq~~l~~~eaQAaTC---NqTV~tL~~SL~kekaq~q~q---q~~v~elqgEI~~Lnq~Lqda~~~~~ 91 (99)
T 3ni0_A 22 LLQRQLTRTQDSLLQAETQANSC---NLTVVTLQESLEKKVSQALEQ---QARIKELENEVTKLNQELENLRIQKE 91 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777775543322111222 256788888887754443321 22467777777777777777765543
No 202
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=31.90 E-value=36 Score=33.53 Aligned_cols=38 Identities=21% Similarity=0.051 Sum_probs=29.8
Q ss_pred CCeEEEEcCccCCCCCCCcHHHH--HHHHHHHHHHCCCeEEEEeeCCC
Q 004879 332 GLHVIHIAAEMAPVAKVGGLGDV--VAGLGKALQKKGHLVEIVLPKYD 377 (725)
Q Consensus 332 ~MkILhIs~E~~P~~kvGGlg~v--V~~LaraL~~~GHeV~VItP~y~ 377 (725)
+.||+... +||.+.+ ..+|.+.|.+.|++|+|+...-.
T Consensus 7 ~k~I~lgi--------TGs~aa~~k~~~ll~~L~~~g~eV~vv~T~~A 46 (201)
T 3lqk_A 7 GKHVGFGL--------TGSHCTYHEVLPQMERLVELGAKVTPFVTHTV 46 (201)
T ss_dssp TCEEEEEC--------CSCGGGGGGTHHHHHHHHHTTCEEEEECSSCS
T ss_pred CCEEEEEE--------EChHHHHHHHHHHHHHHhhCCCEEEEEEChhH
Confidence 35777664 4677766 99999999999999999976533
No 203
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=31.80 E-value=2e+02 Score=24.11 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=14.1
Q ss_pred HHHhhhhhHHhhHHHHHhhhhc
Q 004879 106 MLEMERSSLESSLKELESKLSI 127 (725)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~ 127 (725)
.+...++.|+.+++|+|.+...
T Consensus 5 ~l~~~~~sLE~~l~e~e~~~~~ 26 (84)
T 1gk4_A 5 ALKGTNESLERQMREMEENFAV 26 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777777776643
No 204
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=31.78 E-value=39 Score=32.55 Aligned_cols=35 Identities=29% Similarity=0.335 Sum_probs=26.1
Q ss_pred CeEEEEcCccCCCCCCCcHH--HHHHHHHHHHHHCCCeEEEEeeC
Q 004879 333 LHVIHIAAEMAPVAKVGGLG--DVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg--~vV~~LaraL~~~GHeV~VItP~ 375 (725)
|||++ +. .||.| +.+..|+.+|+++|+.|-+|=..
T Consensus 1 mkI~v-s~-------kGGvGKTt~a~~LA~~la~~g~~VlliD~D 37 (254)
T 3kjh_A 1 MKLAV-AG-------KGGVGKTTVAAGLIKIMASDYDKIYAVDGD 37 (254)
T ss_dssp CEEEE-EC-------SSSHHHHHHHHHHHHHHTTTCSCEEEEEEC
T ss_pred CEEEE-ec-------CCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 78776 43 47765 55567899999999999999533
No 205
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=31.72 E-value=38 Score=34.83 Aligned_cols=35 Identities=26% Similarity=0.219 Sum_probs=26.7
Q ss_pred CCCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Q 004879 329 ISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 329 ~~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP 374 (725)
....|||.+| |+|.+-..+++.|.+.||+|.++-+
T Consensus 18 ~~~m~~I~iI-----------G~G~mG~~~A~~l~~~G~~V~~~dr 52 (310)
T 3doj_A 18 GSHMMEVGFL-----------GLGIMGKAMSMNLLKNGFKVTVWNR 52 (310)
T ss_dssp CCCSCEEEEE-----------CCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred cccCCEEEEE-----------CccHHHHHHHHHHHHCCCeEEEEeC
Confidence 3445889888 4456667789999999999988743
No 206
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=31.67 E-value=43 Score=33.29 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=26.9
Q ss_pred CeEEEEcCccCCCCCCCcHH--HHHHHHHHHHHHCCCeEEEEee
Q 004879 333 LHVIHIAAEMAPVAKVGGLG--DVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg--~vV~~LaraL~~~GHeV~VItP 374 (725)
++|+.|+.. .||.| +.+..|+.+|+++|..|.+|=.
T Consensus 18 ~~vI~v~s~------kGGvGKTT~a~nLA~~la~~G~~VlliD~ 55 (262)
T 2ph1_A 18 KSRIAVMSG------KGGVGKSTVTALLAVHYARQGKKVGILDA 55 (262)
T ss_dssp SCEEEEECS------SSCTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEEcC------CCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 567766652 46655 6777899999999999988843
No 207
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=31.49 E-value=2.6e+02 Score=24.23 Aligned_cols=15 Identities=27% Similarity=0.527 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhHhhh
Q 004879 176 LRKKVDKLEESLDEA 190 (725)
Q Consensus 176 ~~~~~~~~~~~~~~~ 190 (725)
|+.++..|+.||+-.
T Consensus 2 lan~La~le~sLe~E 16 (101)
T 1d7m_A 2 MANRLAGLENSLESE 16 (101)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHhhhh
Confidence 456666777777653
No 208
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=31.49 E-value=38 Score=32.28 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=21.2
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 349 GGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 349 GGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
||.|.+-..+++.|.+.||+|.++...
T Consensus 11 GatG~iG~~l~~~L~~~g~~V~~~~r~ 37 (227)
T 3dhn_A 11 GASGFVGSALLNEALNRGFEVTAVVRH 37 (227)
T ss_dssp TCCHHHHHHHHHHHHTTTCEEEEECSC
T ss_pred cCCchHHHHHHHHHHHCCCEEEEEEcC
Confidence 566666677889999999999988643
No 209
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=31.38 E-value=33 Score=35.58 Aligned_cols=36 Identities=17% Similarity=0.023 Sum_probs=24.4
Q ss_pred CCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHC-CCeEEEEeeC
Q 004879 330 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKK-GHLVEIVLPK 375 (725)
Q Consensus 330 ~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~-GHeV~VItP~ 375 (725)
+.+|+|+++ ||.|.+-..|+++|.+. ||+|.++...
T Consensus 22 m~~~~vlVt----------GatG~iG~~l~~~L~~~~g~~V~~~~r~ 58 (372)
T 3slg_A 22 MKAKKVLIL----------GVNGFIGHHLSKRILETTDWEVFGMDMQ 58 (372)
T ss_dssp -CCCEEEEE----------SCSSHHHHHHHHHHHHHSSCEEEEEESC
T ss_pred cCCCEEEEE----------CCCChHHHHHHHHHHhCCCCEEEEEeCC
Confidence 445677665 44444445678888887 9999998744
No 210
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=31.25 E-value=2.5e+02 Score=24.12 Aligned_cols=80 Identities=15% Similarity=0.193 Sum_probs=38.4
Q ss_pred HHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 004879 153 QGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLY 232 (725)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (725)
|.|=++.+.-.|+.-..=+||..|..|+..+... ...+++..+-. +..-++.++..+.- -+..+...++..
T Consensus 12 q~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~-~~~~~~~~ye~----~i~~Lr~~i~~~~~----ek~~l~~e~dnl 82 (93)
T 3s4r_A 12 QELNDRFANLIDKVRFLEQQNKILLAELEQLKGQ-GKSRLGDLYEE----EMRELRRQVDQLTN----DKARVEVERDNL 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH----HHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCcHHHHHH----HHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 3333333334444444556788888887777654 34455544432 22333333333222 233334444445
Q ss_pred HHHHHHHHH
Q 004879 233 QESVKEFQD 241 (725)
Q Consensus 233 ~~~~~~~~~ 241 (725)
+..+.+|+.
T Consensus 83 ~~~~~~~k~ 91 (93)
T 3s4r_A 83 AEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555554
No 211
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=31.03 E-value=3e+02 Score=29.86 Aligned_cols=24 Identities=25% Similarity=0.072 Sum_probs=15.0
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHH
Q 004879 218 LQRSDEEIHSYVQLYQESVKEFQD 241 (725)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~ 241 (725)
+++.+.++..-.++|+..+..-|-
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~ 481 (487)
T 3oja_A 458 NGEADLALASANATLQELVVREQN 481 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHhcccHHHHHHHHHHH
Confidence 555666666666777777655443
No 212
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=30.67 E-value=46 Score=36.44 Aligned_cols=59 Identities=24% Similarity=0.330 Sum_probs=48.7
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 004879 66 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSI 127 (725)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (725)
.+.|..|+..++++...|+..++.+++++...+ +.+...+.+|..|...+.||.....+
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~---~~l~~~~~~rr~l~n~~~~l~gnIrV 63 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCK---EQLFQSNMERKELHNTVMDLRDNIRV 63 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 457899999999999999999988888776654 56888999999999999998765543
No 213
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=30.56 E-value=26 Score=30.21 Aligned_cols=31 Identities=23% Similarity=0.374 Sum_probs=21.0
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhh
Q 004879 68 SFSKELDSLKTENLSLKNDIKVLKAELNSVK 98 (725)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (725)
.+..+...|..||..|+..|+.|+.++....
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777777665443
No 214
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=30.43 E-value=51 Score=27.67 Aligned_cols=23 Identities=13% Similarity=0.120 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHCC-CeEEEEee
Q 004879 352 GDVVAGLGKALQKKG-HLVEIVLP 374 (725)
Q Consensus 352 g~vV~~LaraL~~~G-HeV~VItP 374 (725)
|.+-..+++.|.+.| ++|.++..
T Consensus 14 G~iG~~~~~~l~~~g~~~v~~~~r 37 (118)
T 3ic5_A 14 GKIGQMIAALLKTSSNYSVTVADH 37 (118)
T ss_dssp SHHHHHHHHHHHHCSSEEEEEEES
T ss_pred CHHHHHHHHHHHhCCCceEEEEeC
Confidence 444456788888999 88877754
No 215
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=30.29 E-value=1.6e+02 Score=33.40 Aligned_cols=71 Identities=14% Similarity=0.153 Sum_probs=48.0
Q ss_pred cchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHH
Q 004879 82 SLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLA 157 (725)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (725)
+=+++|+.+..+....++.|+....+..-|..||+-+-++++.+.. .-.+++. .|...+-++++.++..|+
T Consensus 507 ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~l~ 577 (605)
T 4b9q_A 507 LNEDEIQKMVRDAEANAEADRKCEELVQTRNQGDHLLHSTRKQVEE---AGDKLPA--DDKTAIESALTALETALK 577 (605)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HGGGSCH--HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhCCH--HHHHHHHHHHHHHHHHHh
Confidence 4478899999998888888888888888888888888888877753 1123322 222344455555555554
No 216
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=30.26 E-value=35 Score=35.37 Aligned_cols=29 Identities=38% Similarity=0.429 Sum_probs=21.5
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIV 372 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VI 372 (725)
|||++|.. |. .=.-+|.+|++.|++|+|+
T Consensus 2 m~V~IVGa---------Gp--aGl~~A~~L~~~G~~v~v~ 30 (412)
T 4hb9_A 2 MHVGIIGA---------GI--GGTCLAHGLRKHGIKVTIY 30 (412)
T ss_dssp CEEEEECC---------SH--HHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEECc---------CH--HHHHHHHHHHhCCCCEEEE
Confidence 89999953 22 2234677889999999999
No 217
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=30.07 E-value=91 Score=27.69 Aligned_cols=10 Identities=50% Similarity=0.610 Sum_probs=2.9
Q ss_pred hHHHHHhhhh
Q 004879 117 SLKELESKLS 126 (725)
Q Consensus 117 ~~~~~~~~~~ 126 (725)
||+|+|.|+-
T Consensus 3 sL~EvEEKyr 12 (103)
T 4h22_A 3 SLAEVEEKYK 12 (103)
T ss_dssp -----CCTHH
T ss_pred hHHHHHHHHH
Confidence 4666666654
No 218
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Probab=29.99 E-value=44 Score=31.85 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=19.5
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEee
Q 004879 349 GGLGDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 349 GGlg~vV~~LaraL~~~GHeV~VItP 374 (725)
||.|.+-..+++.|.+.||+|.++..
T Consensus 7 Ga~G~~G~~ia~~l~~~g~~V~~~~r 32 (212)
T 1jay_A 7 GGTGNLGKGLALRLATLGHEIVVGSR 32 (212)
T ss_dssp TTTSHHHHHHHHHHHTTTCEEEEEES
T ss_pred cCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 34555556788899999999988754
No 219
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=29.92 E-value=1.5e+02 Score=24.59 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=17.2
Q ss_pred hhhhHHHHHHHHHHHHhHhhhh
Q 004879 170 LQQNQELRKKVDKLEESLDEAN 191 (725)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~ 191 (725)
-..|++|+++|..|+..|+++-
T Consensus 13 E~~N~~Le~~v~~le~~Le~s~ 34 (72)
T 3cve_A 13 EIRNKDLEGQLSEMEQRLEKSQ 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHH
Confidence 3468888888888888887754
No 220
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=29.78 E-value=3.1e+02 Score=24.61 Aligned_cols=15 Identities=20% Similarity=0.368 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHHH
Q 004879 144 DLYEKVENLQGLLAK 158 (725)
Q Consensus 144 ~~~~~~~~~~~~~~~ 158 (725)
+|..++...+..|..
T Consensus 28 ~L~~~L~~AEeaL~~ 42 (110)
T 2v4h_A 28 DLRQQLQQAEEALVA 42 (110)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555544444444
No 221
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=29.68 E-value=1.9e+02 Score=26.60 Aligned_cols=40 Identities=23% Similarity=0.449 Sum_probs=24.3
Q ss_pred chhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcch
Q 004879 83 LKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQ 129 (725)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (725)
+..++..=+++|..+.+ |.+.++.|+..+.+||..+..++
T Consensus 49 ~qsele~k~aeLe~lee-------L~~ki~eL~~kvA~le~e~~~~e 88 (125)
T 2pms_C 49 LQSKLDAKKAKLSKLEE-------LSDKIDELDAEIAKLEDQLKAAE 88 (125)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHH
Confidence 44666666777776633 55556666666666666655544
No 222
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=29.60 E-value=35 Score=33.74 Aligned_cols=34 Identities=24% Similarity=0.429 Sum_probs=26.0
Q ss_pred CeEEEEcCccCCCCCCCcHH--HHHHHHHHHHHHCCCeEEEEe
Q 004879 333 LHVIHIAAEMAPVAKVGGLG--DVVAGLGKALQKKGHLVEIVL 373 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg--~vV~~LaraL~~~GHeV~VIt 373 (725)
|||+.|+. .||+| +.+..|+.+|+++|+.|-+|=
T Consensus 1 M~vI~vs~-------KGGvGKTT~a~nLA~~la~~G~~VlliD 36 (269)
T 1cp2_A 1 MRQVAIYG-------KGGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp CEEEEEEE-------CTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CcEEEEec-------CCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence 67777742 35554 667789999999999999884
No 223
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=29.56 E-value=32 Score=35.62 Aligned_cols=36 Identities=14% Similarity=0.250 Sum_probs=25.2
Q ss_pred CCCCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Q 004879 328 SISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 328 ~~~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP 374 (725)
++...|||.+|.. |.+| ..+++.|.+.||+|.++-+
T Consensus 27 ~~~~~~~I~iIG~--------G~mG---~~~a~~l~~~G~~V~~~dr 62 (320)
T 4dll_A 27 SDPYARKITFLGT--------GSMG---LPMARRLCEAGYALQVWNR 62 (320)
T ss_dssp --CCCSEEEEECC--------TTTH---HHHHHHHHHTTCEEEEECS
T ss_pred cccCCCEEEEECc--------cHHH---HHHHHHHHhCCCeEEEEcC
Confidence 3455689999843 4444 6688889999999988743
No 224
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=29.56 E-value=40 Score=32.81 Aligned_cols=33 Identities=18% Similarity=0.099 Sum_probs=25.9
Q ss_pred CCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Q 004879 330 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVL 373 (725)
Q Consensus 330 ~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VIt 373 (725)
+..|||.+| |.|.+-..+++.|.+.||+|.++.
T Consensus 21 m~mmkI~II-----------G~G~mG~~la~~l~~~g~~V~~v~ 53 (220)
T 4huj_A 21 QSMTTYAII-----------GAGAIGSALAERFTAAQIPAIIAN 53 (220)
T ss_dssp GGSCCEEEE-----------ECHHHHHHHHHHHHHTTCCEEEEC
T ss_pred hcCCEEEEE-----------CCCHHHHHHHHHHHhCCCEEEEEE
Confidence 345788888 457777889999999999998853
No 225
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=29.47 E-value=47 Score=33.60 Aligned_cols=35 Identities=29% Similarity=0.343 Sum_probs=26.5
Q ss_pred CeEEEEcCccCCCCCCCcH--HHHHHHHHHHHHHCCCeEEEEe
Q 004879 333 LHVIHIAAEMAPVAKVGGL--GDVVAGLGKALQKKGHLVEIVL 373 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGl--g~vV~~LaraL~~~GHeV~VIt 373 (725)
|||+.|+.. .||+ .+.+..|+.+|+++|..|.+|=
T Consensus 4 ~kvI~v~s~------KGGvGKTT~a~nLA~~La~~G~~VlliD 40 (286)
T 2xj4_A 4 TRVIVVGNE------KGGAGKSTIAVHLVTALLYGGAKVAVID 40 (286)
T ss_dssp CEEEEECCS------SSCTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEEcC------CCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 567777652 3555 4677789999999999998883
No 226
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=29.37 E-value=2.4e+02 Score=28.33 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=13.2
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHh
Q 004879 68 SFSKELDSLKTENLSLKNDIKVLKAEL 94 (725)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (725)
++..-++.+..|...+-+.-..+-..|
T Consensus 64 s~~~aw~~~~~~~e~~a~~h~~~a~~l 90 (290)
T 3i2w_A 64 TTEAAWKGVLTESERISDVHMKIKDNL 90 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555544444444444444
No 227
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=29.33 E-value=97 Score=25.83 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 004879 205 ELMQQKMKLLEERLQRSDEEIHSYVQLYQESV 236 (725)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (725)
+-.+..+..+|..++....++..+++.||.++
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~Ll 39 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARMQQQLDEYQELL 39 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677778888888888888888888773
No 228
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=29.32 E-value=41 Score=33.68 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=20.0
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 349 GGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 349 GGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
||.|..-..|+++|.+.||+|.++...
T Consensus 14 GatG~iG~~l~~~L~~~g~~V~~~~r~ 40 (321)
T 3vps_A 14 GGAGFIGGHLARALVASGEEVTVLDDL 40 (321)
T ss_dssp TTTSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEecC
Confidence 444555557788899999999998643
No 229
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=29.20 E-value=1.3e+02 Score=24.72 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=18.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhhchHHHHH
Q 004879 197 SEKMQQYNELMQQKMKLLEERLQRSDEEIHS 227 (725)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (725)
+.+|+.+-+.-++.++.||..+.....+..+
T Consensus 17 R~AQRafReRK~~~i~~LE~~v~~le~~~~~ 47 (70)
T 1gd2_E 17 RAAQRAFRKRKEDHLKALETQVVTLKELHSS 47 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666555554444
No 230
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=29.13 E-value=30 Score=29.26 Aligned_cols=31 Identities=23% Similarity=0.374 Sum_probs=21.7
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhh
Q 004879 68 SFSKELDSLKTENLSLKNDIKVLKAELNSVK 98 (725)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (725)
.+......|..||..|+..|+.|+.++...+
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777788888877777777766544
No 231
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2
Probab=28.98 E-value=27 Score=34.75 Aligned_cols=37 Identities=16% Similarity=0.119 Sum_probs=24.6
Q ss_pred CCCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 329 ISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 329 ~~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
+.++|+|+++ ||.|..-..+++.|.++||+|.++...
T Consensus 9 ~~~~~~vlVt----------GatG~iG~~l~~~L~~~g~~V~~~~r~ 45 (292)
T 1vl0_A 9 HHHHMKILIT----------GANGQLGREIQKQLKGKNVEVIPTDVQ 45 (292)
T ss_dssp ---CEEEEEE----------STTSHHHHHHHHHHTTSSEEEEEECTT
T ss_pred ccccceEEEE----------CCCChHHHHHHHHHHhCCCeEEeccCc
Confidence 4566788766 444455556788888999999887643
No 232
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=28.92 E-value=2.2e+02 Score=25.20 Aligned_cols=33 Identities=27% Similarity=0.300 Sum_probs=20.4
Q ss_pred hhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcch
Q 004879 97 VKDADERVVMLEMERSSLESSLKELESKLSISQ 129 (725)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (725)
-+++.+.+......++.++...++|+.++...+
T Consensus 10 ~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 10 NAEVTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666665543
No 233
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=28.91 E-value=36 Score=33.69 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=28.1
Q ss_pred CCCCeEEEEcCccCCCCCCCcHH--HHHHHHHHHHHHCCCeEEEEeeC
Q 004879 330 SSGLHVIHIAAEMAPVAKVGGLG--DVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 330 ~~~MkILhIs~E~~P~~kvGGlg--~vV~~LaraL~~~GHeV~VItP~ 375 (725)
.++|+|+.|+.. .||.| +.+..|+.+|+ +|..|-+|=..
T Consensus 24 ~~~~~vI~v~s~------kGGvGKTT~a~~LA~~la-~g~~VlliD~D 64 (267)
T 3k9g_A 24 NKKPKIITIASI------KGGVGKSTSAIILATLLS-KNNKVLLIDMD 64 (267)
T ss_dssp --CCEEEEECCS------SSSSCHHHHHHHHHHHHT-TTSCEEEEEEC
T ss_pred CCCCeEEEEEeC------CCCchHHHHHHHHHHHHH-CCCCEEEEECC
Confidence 345788888652 46554 66778999999 99999999544
No 234
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*
Probab=28.76 E-value=44 Score=33.52 Aligned_cols=26 Identities=31% Similarity=0.267 Sum_probs=19.3
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEee
Q 004879 349 GGLGDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 349 GGlg~vV~~LaraL~~~GHeV~VItP 374 (725)
||.|..-..|++.|.+.||+|.++..
T Consensus 7 GatG~iG~~l~~~L~~~g~~V~~~~r 32 (312)
T 3ko8_A 7 GGAGFIGSHLVDKLVELGYEVVVVDN 32 (312)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred CCCChHHHHHHHHHHhCCCEEEEEeC
Confidence 44444555678899999999998853
No 235
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=28.71 E-value=48 Score=33.87 Aligned_cols=34 Identities=18% Similarity=-0.037 Sum_probs=24.7
Q ss_pred CCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 332 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 332 ~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
+|+|+++ ||.|.+-..|++.|.++||+|.++...
T Consensus 25 ~~~vlVt----------GatG~iG~~l~~~L~~~g~~V~~~~r~ 58 (351)
T 3ruf_A 25 PKTWLIT----------GVAGFIGSNLLEKLLKLNQVVIGLDNF 58 (351)
T ss_dssp CCEEEEE----------TTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCeEEEE----------CCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4677765 444455567888899999999988744
No 236
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=28.49 E-value=31 Score=28.78 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=21.5
Q ss_pred hhHHHHHHhhhhhHHhhHHHHHhhhhcchh
Q 004879 101 DERVVMLEMERSSLESSLKELESKLSISQE 130 (725)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (725)
=+|+..+|++-+.||..|.++|.++..+|+
T Consensus 41 ldRlA~lEqdE~~LE~~l~~i~~rle~~qe 70 (72)
T 2xu6_A 41 LGKIANIEQNQLMLEDNLKQIDDRLDFLEE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999988875
No 237
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=28.35 E-value=54 Score=36.83 Aligned_cols=29 Identities=17% Similarity=0.062 Sum_probs=21.1
Q ss_pred HhhhhhhhHHHhHHHHHHHHHHHhhcccC
Q 004879 12 VAAQEKIHVELLEDQLQKLQHELTHRGVS 40 (725)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (725)
++.+--+.+.++-+..+.++..|..|+.+
T Consensus 35 ~~~~pmlD~~~ir~n~~~v~~~l~~R~~~ 63 (501)
T 1wle_A 35 YSALPLLDMESLCAYPEDAARALDLRKGE 63 (501)
T ss_dssp SSCCCCCCHHHHHHSHHHHHHHHHHHTCS
T ss_pred CCCCCccCHHHHHhCHHHHHHHHHHcCCC
Confidence 34444556777888899999999988753
No 238
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*
Probab=28.19 E-value=45 Score=33.71 Aligned_cols=33 Identities=30% Similarity=0.162 Sum_probs=22.8
Q ss_pred CCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Q 004879 332 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 332 ~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP 374 (725)
.|+|++... .||+| ..+++.|.+.||+|.++..
T Consensus 3 ~~~vlVtGa-------tG~iG---~~l~~~L~~~G~~V~~~~r 35 (345)
T 2z1m_A 3 GKRALITGI-------RGQDG---AYLAKLLLEKGYEVYGADR 35 (345)
T ss_dssp CCEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEECS
T ss_pred CCEEEEECC-------CChHH---HHHHHHHHHCCCEEEEEEC
Confidence 467665532 35555 5678888899999988864
No 239
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=28.12 E-value=50 Score=33.71 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=25.0
Q ss_pred CCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Q 004879 330 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 330 ~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP 374 (725)
.+.|+|++... .||+| ..++++|.+.||+|.++..
T Consensus 18 ~~~~~vlVTGa-------sG~iG---~~l~~~L~~~g~~V~~~~r 52 (330)
T 2pzm_A 18 GSHMRILITGG-------AGCLG---SNLIEHWLPQGHEILVIDN 52 (330)
T ss_dssp TTCCEEEEETT-------TSHHH---HHHHHHHGGGTCEEEEEEC
T ss_pred CCCCEEEEECC-------CCHHH---HHHHHHHHHCCCEEEEEEC
Confidence 44578776643 45665 4578888899999988864
No 240
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=28.06 E-value=54 Score=23.23 Aligned_cols=21 Identities=10% Similarity=0.281 Sum_probs=17.5
Q ss_pred HhhhhHHHHHHHHHHHHhHhh
Q 004879 169 VLQQNQELRKKVDKLEESLDE 189 (725)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~ 189 (725)
.++.|.+|++.|.+|++.|.+
T Consensus 12 Ll~~~~~Le~EV~RLk~lL~~ 32 (33)
T 3c3g_A 12 IXSKXYHXENXLARIKXLLXE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHhhHHHHHHHHHHHHHcc
Confidence 578899999999999988754
No 241
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=27.92 E-value=51 Score=23.50 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=17.8
Q ss_pred HhhhhHHHHHHHHHHHHhHhh
Q 004879 169 VLQQNQELRKKVDKLEESLDE 189 (725)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~ 189 (725)
.++.|++|++.|.+|++.|.+
T Consensus 13 Ll~~n~~Le~eV~rLk~ll~~ 33 (34)
T 2oxj_A 13 LLXKNXHLEXEVXRLKXLVXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHhhhhHHHHHHHHHHHHhc
Confidence 477899999999999988753
No 242
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=27.73 E-value=28 Score=27.62 Aligned_cols=32 Identities=22% Similarity=0.471 Sum_probs=22.6
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhh
Q 004879 66 IHSFSKELDSLKTENLSLKNDIKVLKAELNSV 97 (725)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (725)
+..|..+.+.|..||..|+..|+.|+.++...
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777778888877777777776544
No 243
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=27.66 E-value=30 Score=24.98 Aligned_cols=16 Identities=38% Similarity=0.511 Sum_probs=12.2
Q ss_pred hHhhhhhhhhhccchh
Q 004879 70 SKELDSLKTENLSLKN 85 (725)
Q Consensus 70 ~~~~~~~~~~~~~~~~ 85 (725)
-+|+..||+||..|++
T Consensus 20 deeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 20 DNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHh
Confidence 5688889999976653
No 244
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=27.66 E-value=42 Score=33.74 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=22.9
Q ss_pred CCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Q 004879 332 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 332 ~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP 374 (725)
.|||.+|.. |.+ -..++..|.+.||+|+++..
T Consensus 3 ~m~i~iiG~--------G~~---G~~~a~~l~~~g~~V~~~~r 34 (316)
T 2ew2_A 3 AMKIAIAGA--------GAM---GSRLGIMLHQGGNDVTLIDQ 34 (316)
T ss_dssp -CEEEEECC--------SHH---HHHHHHHHHHTTCEEEEECS
T ss_pred CCeEEEECc--------CHH---HHHHHHHHHhCCCcEEEEEC
Confidence 478888832 444 45677888999999998853
No 245
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=27.53 E-value=79 Score=26.32 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=34.6
Q ss_pred chhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchh
Q 004879 83 LKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQE 130 (725)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (725)
+|.-+++||.+..+. .+++..+|+||..-=+.|++.|--...+..
T Consensus 7 iKkkmqaLk~Ekdna---~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~ 51 (75)
T 3mtu_A 7 IKKKMQMLKLDKENA---LDRAEQAEADKDFYFGKLRNIELICQENEG 51 (75)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 455667777766554 456778999999999999999988776654
No 246
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=27.51 E-value=2e+02 Score=28.72 Aligned_cols=110 Identities=13% Similarity=0.143 Sum_probs=62.0
Q ss_pred CCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHC--CCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeE
Q 004879 331 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKK--GHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVW 408 (725)
Q Consensus 331 ~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~--GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~ 408 (725)
.+|||+++++ |.+.....+.+++.+. |++|..|....+... + + .
T Consensus 21 ~~~rI~~l~S---------G~g~~~~~~l~~l~~~~~~~~I~~Vvt~~~~~~---~--~---~----------------- 66 (229)
T 3auf_A 21 HMIRIGVLIS---------GSGTNLQAILDGCREGRIPGRVAVVISDRADAY---G--L---E----------------- 66 (229)
T ss_dssp TCEEEEEEES---------SCCHHHHHHHHHHHTTSSSEEEEEEEESSTTCH---H--H---H-----------------
T ss_pred CCcEEEEEEe---------CCcHHHHHHHHHHHhCCCCCeEEEEEcCCCchH---H--H---H-----------------
Confidence 3579999865 2246677788888775 567655543322110 0 0 0
Q ss_pred eeeeCCeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhccCCC
Q 004879 409 VSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGL 488 (725)
Q Consensus 409 ~~~v~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya~~gl 488 (725)
.....||+++.+++. -| .. | .-|...+++.++. .+||+|-+-.|..-+ ++-++..+.
T Consensus 67 ~A~~~gIp~~~~~~~----~~------~~-----r-~~~~~~~~~~l~~--~~~Dliv~agy~~IL-~~~~l~~~~---- 123 (229)
T 3auf_A 67 RARRAGVDALHMDPA----AY------PS-----R-TAFDAALAERLQA--YGVDLVCLAGYMRLV-RGPMLTAFP---- 123 (229)
T ss_dssp HHHHTTCEEEECCGG----GS------SS-----H-HHHHHHHHHHHHH--TTCSEEEESSCCSCC-CHHHHHHST----
T ss_pred HHHHcCCCEEEECcc----cc------cc-----h-hhccHHHHHHHHh--cCCCEEEEcChhHhC-CHHHHhhcc----
Confidence 012368888866531 01 10 1 1344555666664 589999998886444 455555432
Q ss_pred CCCcEEEEeeCC
Q 004879 489 NSARVCFTCHNF 500 (725)
Q Consensus 489 ~~ipiV~TiHn~ 500 (725)
--++.+|..
T Consensus 124 ---~~~iNiHpS 132 (229)
T 3auf_A 124 ---NRILNIHPS 132 (229)
T ss_dssp ---TCEEEEESS
T ss_pred ---CCEEEEccC
Confidence 137888864
No 247
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=27.28 E-value=81 Score=29.55 Aligned_cols=37 Identities=5% Similarity=0.173 Sum_probs=30.5
Q ss_pred CCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Q 004879 332 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVL 373 (725)
Q Consensus 332 ~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VIt 373 (725)
.|||++|... | .|-...++..+++.+...|++|+++-
T Consensus 5 M~kilii~~S--~---~g~T~~la~~i~~~l~~~g~~v~~~~ 41 (200)
T 2a5l_A 5 SPYILVLYYS--R---HGATAEMARQIARGVEQGGFEARVRT 41 (200)
T ss_dssp CCEEEEEECC--S---SSHHHHHHHHHHHHHHHTTCEEEEEB
T ss_pred cceEEEEEeC--C---CChHHHHHHHHHHHHhhCCCEEEEEE
Confidence 4699999764 3 47788888889999999999999884
No 248
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Probab=27.08 E-value=52 Score=33.62 Aligned_cols=36 Identities=28% Similarity=0.294 Sum_probs=23.6
Q ss_pred CCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 330 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 330 ~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
.++|+|+++ ||.|..-..|+++|.+.||+|.++...
T Consensus 25 ~~~~~vlVt----------GatG~iG~~l~~~L~~~g~~V~~~~r~ 60 (343)
T 2b69_A 25 KDRKRILIT----------GGAGFVGSHLTDKLMMDGHEVTVVDNF 60 (343)
T ss_dssp --CCEEEEE----------TTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cCCCEEEEE----------cCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 345677655 444444456788888999999988643
No 249
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=27.06 E-value=77 Score=25.09 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 004879 207 MQQKMKLLEERLQRSDEEIHSYVQLYQESV 236 (725)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (725)
.+.++..+|..++....++..+++.||.++
T Consensus 5 ~q~~i~~le~el~~~r~e~~~q~~eYq~Ll 34 (59)
T 1gk6_A 5 LEDKVEELLSKNYHLENEVARLKKLVGDLL 34 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777778888888888888888773
No 250
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=27.06 E-value=1.1e+02 Score=27.85 Aligned_cols=58 Identities=26% Similarity=0.256 Sum_probs=39.6
Q ss_pred chhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHH---HhHhhhhhHHHhHHHH
Q 004879 138 LKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLE---ESLDEANIYKLSSEKM 200 (725)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 200 (725)
++.|-+.|-++++.++.-|+.|..+-|+.+ +.| +.+.+++|+ ++|..-.-++|+.|++
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~--i~q---f~~E~~~l~k~I~~lk~~q~~~lske~~ 68 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVEAADK--YAE---LEKEKATLEAEIARLREVHSQKLSKEAQ 68 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCTTH--HHH---HHHHHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHH--HHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 567888899999999999999988888874 333 344444444 4455555566665544
No 251
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=27.02 E-value=19 Score=28.31 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=20.8
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhh
Q 004879 66 IHSFSKELDSLKTENLSLKNDIKVLKAELN 95 (725)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (725)
+..|..+...|..||..|+..++.|+.++.
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445566677777788888777777776543
No 252
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=26.95 E-value=1.1e+02 Score=25.11 Aligned_cols=58 Identities=26% Similarity=0.315 Sum_probs=43.2
Q ss_pred HhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhh
Q 004879 71 KELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQED 131 (725)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (725)
..++.=++|=-.|+-=+.+|+++|....+..+ +||.+-..++.|..+||.+++.+..-
T Consensus 10 ~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnK---KLe~~~~~~q~s~~~l~k~~~d~~~~ 67 (74)
T 2q6q_A 10 FKLREKQNEIFELKKIAETLRSKLEKYVDITK---KLEDQNLNLQIKISDLEKKLSDANST 67 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhhHHHHhhccccchh
Confidence 34455555555666778899999987766554 78999999999999999999887654
No 253
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=26.77 E-value=1.6e+02 Score=32.24 Aligned_cols=30 Identities=23% Similarity=0.494 Sum_probs=21.1
Q ss_pred CCCCChHHHHHHHHHHhhhhhcccCChHHHHHH
Q 004879 259 VDDMPWEFWSRLLLIIDGWLLEKKLSTSEAKLL 291 (725)
Q Consensus 259 ~~~~~~~~~~~~ll~~d~~~~~~~~~~~~~~~~ 291 (725)
+.++| .||...|. ..-+++.+|+..|...|
T Consensus 182 ~kgIP-~FWltalk--N~~~lse~I~e~De~iL 211 (417)
T 2ayu_A 182 VKGIP-SFWLTALE--NLPIVCDTITDRDAEVL 211 (417)
T ss_dssp CSSCT-THHHHHHH--TSTTGGGTCCHHHHTGG
T ss_pred ccCCc-cHHHHHHH--cChHHHHhhhhhhHHHH
Confidence 45665 89998886 44466888887776544
No 254
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=26.69 E-value=73 Score=28.52 Aligned_cols=37 Identities=16% Similarity=0.278 Sum_probs=29.8
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP 374 (725)
|||+++... ..|....++..+++.+...|++|.++-.
T Consensus 2 ~ki~I~y~S-----~tGnT~~~A~~ia~~l~~~g~~v~~~~~ 38 (148)
T 3f6r_A 2 SKVLIVFGS-----STGNTESIAQKLEELIAAGGHEVTLLNA 38 (148)
T ss_dssp CEEEEEEEC-----SSSHHHHHHHHHHHHHHTTTCEEEEEET
T ss_pred CeEEEEEEC-----CCchHHHHHHHHHHHHHhCCCeEEEEeh
Confidence 577777542 3688899999999999999999998853
No 255
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=26.59 E-value=47 Score=25.94 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=13.0
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhh
Q 004879 70 SKELDSLKTENLSLKNDIKVLKAELN 95 (725)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (725)
..+.+.||.||..||.-++.|+.++.
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~ 43 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENK 43 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444443
No 256
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=26.55 E-value=4.9e+02 Score=25.91 Aligned_cols=67 Identities=9% Similarity=0.075 Sum_probs=36.8
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhh-h-hhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhc
Q 004879 68 SFSKELDSLKTENLSLKNDIKVLKAELN-S-VKDADERVVMLEMERSSLESSLKELESKLSISQEDVAK 134 (725)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (725)
++..-+..+..|...+-+.-..+-..|. + +.....+....++.|...+.....++..+..+-.++.|
T Consensus 66 t~~~~w~~~l~~~e~~a~~h~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~K 134 (301)
T 2efk_A 66 SQQQSFVQILQEVNDFAGQRELVAENLSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLEN 134 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666555555555555552 2 23344455555666666666666666655554444433
No 257
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=26.51 E-value=2e+02 Score=32.19 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhhhchHHHHH
Q 004879 206 LMQQKMKLLEERLQRSDEEIHS 227 (725)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~ 227 (725)
.++++++.+|+.+....++++.
T Consensus 82 ~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 82 KLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777766655555544
No 258
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=26.51 E-value=64 Score=34.06 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=27.8
Q ss_pred CeEEEEcCccCCCCCCCcHHH--HHHHHHHHHHHCCCeEEEEee
Q 004879 333 LHVIHIAAEMAPVAKVGGLGD--VVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~--vV~~LaraL~~~GHeV~VItP 374 (725)
|||+.|+. ..||+|. .+..||.+|++.|..|-+|=-
T Consensus 1 MkvIav~s------~KGGvGKTT~a~nLA~~LA~~G~rVLlID~ 38 (361)
T 3pg5_A 1 MRTISFFN------NKGGVGKTTLSTNVAHYFALQGKRVLYVDC 38 (361)
T ss_dssp CEEEEBCC------SSCCHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEEc------CCCCCcHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 78888865 2577765 556689999999999999943
No 259
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=26.37 E-value=39 Score=23.21 Aligned_cols=26 Identities=38% Similarity=0.557 Sum_probs=16.8
Q ss_pred hhhhhhhhhccchhHHHHHHHHhhhh
Q 004879 72 ELDSLKTENLSLKNDIKVLKAELNSV 97 (725)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (725)
|+..||.|-..||.+|.+||-++...
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777776665443
No 260
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=26.37 E-value=4.3e+02 Score=25.22 Aligned_cols=89 Identities=17% Similarity=0.124 Sum_probs=37.1
Q ss_pred hHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHH
Q 004879 102 ERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVD 181 (725)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (725)
..+..+-|....++..|..-..++........++++-.. ..+.+++..|....+....-+..=-.-|++-+++-+.++
T Consensus 38 ~~ve~llkkH~~le~ei~~~~~~v~~l~~~a~~l~~~~~--~~i~~rl~~l~~~~~~L~~~a~~R~~~L~~L~~f~~~~~ 115 (210)
T 3pdy_A 38 PSVEAQLGSHRGLHQSIEEFRAKIERARSDEGQLSPATR--GAYRDCLGRLDLQYAKLLNSSKARLRSLESLHSFVAAAT 115 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555444444444333333333332111 124444444443333322222221122334456666666
Q ss_pred HHHHhHhhhhh
Q 004879 182 KLEESLDEANI 192 (725)
Q Consensus 182 ~~~~~~~~~~~ 192 (725)
.++.-|.+..-
T Consensus 116 ~~~~Wl~eke~ 126 (210)
T 3pdy_A 116 KELMWLNEKEE 126 (210)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666555443
No 261
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=26.27 E-value=91 Score=27.16 Aligned_cols=43 Identities=9% Similarity=0.093 Sum_probs=31.2
Q ss_pred CCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCC
Q 004879 331 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCM 379 (725)
Q Consensus 331 ~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l 379 (725)
+.|||+.+|.. +.|- +..+..+-+++.+.|.++.|-...+...
T Consensus 3 ~~mkIlvvC~~-----G~~T-Sll~~kl~~~~~~~gi~~~i~~~~~~~~ 45 (109)
T 2l2q_A 3 GSMNILLVCGA-----GMST-SMLVQRIEKYAKSKNINATIEAIAETRL 45 (109)
T ss_dssp CCEEEEEESSS-----SCSS-CHHHHHHHHHHHHHTCSEEEEEECSTTH
T ss_pred CceEEEEECCC-----hHhH-HHHHHHHHHHHHHCCCCeEEEEecHHHH
Confidence 44999999973 2333 3777889999999999988776555443
No 262
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=26.13 E-value=91 Score=27.53 Aligned_cols=38 Identities=11% Similarity=-0.012 Sum_probs=29.0
Q ss_pred eEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Q 004879 334 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 334 kILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP 374 (725)
|++++... +|+ ..-.+.-..+++.++.+.||+|.|+.-
T Consensus 3 k~~~vv~~-~P~--g~~~~~~al~~a~a~~a~~~~v~vff~ 40 (119)
T 2d1p_B 3 RIAFVFST-APH--GTAAGREGLDALLATSALTDDLAVFFI 40 (119)
T ss_dssp CEEEEECS-CTT--TSTHHHHHHHHHHHHHTTCSCEEEEEC
T ss_pred EEEEEEcC-CCC--CcHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 57887764 676 234567778999999999999999863
No 263
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}
Probab=26.09 E-value=49 Score=31.92 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=18.2
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEee
Q 004879 349 GGLGDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 349 GGlg~vV~~LaraL~~~GHeV~VItP 374 (725)
||.|-.-..+++.|.++|++|.++..
T Consensus 8 Gasg~iG~~l~~~L~~~g~~V~~~~r 33 (255)
T 2dkn_A 8 GSASGIGAALKELLARAGHTVIGIDR 33 (255)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCcHHHHHHHHHHHhCCCEEEEEeC
Confidence 33344445567888899999988864
No 264
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=26.05 E-value=67 Score=28.66 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=29.0
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVL 373 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VIt 373 (725)
|||+++... + .|....++..+++.+...|++|.++-
T Consensus 1 mki~iiy~S--~---~Gnt~~~a~~i~~~l~~~g~~v~~~~ 36 (147)
T 1f4p_A 1 PKALIVYGS--T---TGNTEYTAETIARELADAGYEVDSRD 36 (147)
T ss_dssp CEEEEEEEC--S---SSHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CeEEEEEEC--C---cCHHHHHHHHHHHHHHhcCCeeEEEe
Confidence 788877542 2 58888899999999999999998874
No 265
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=26.05 E-value=57 Score=32.81 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=20.8
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 349 GGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 349 GGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
||.|..-..|+++|.+.||+|.++...
T Consensus 9 GatG~iG~~l~~~L~~~g~~V~~~~r~ 35 (311)
T 3m2p_A 9 GGTGFLGQYVVESIKNDGNTPIILTRS 35 (311)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCcHHHHHHHHHHHhCCCEEEEEeCC
Confidence 555555567788999999999998755
No 266
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=25.93 E-value=4.3e+02 Score=28.37 Aligned_cols=106 Identities=15% Similarity=0.196 Sum_probs=0.0
Q ss_pred hhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHH
Q 004879 69 FSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEK 148 (725)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (725)
+...+..+-.-+++.++-++.+.+++...-+.-......+.=...|...|.+.+..|..+..-.+ .----
T Consensus 357 ~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 426 (471)
T 3mq9_A 357 VRTAVINAASGRQTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAA----------TANHT 426 (471)
T ss_dssp HHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhh----------hcchh
Q ss_pred HHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhh
Q 004879 149 VENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEA 190 (725)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (725)
|-+||+-|++-..|... .-++|..+|.+|+..|++.
T Consensus 427 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 462 (471)
T 3mq9_A 427 VMALMASLDAEKAQGQK------KVEELEGEITTLNHKLQDA 462 (471)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
No 267
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=25.89 E-value=83 Score=28.83 Aligned_cols=40 Identities=8% Similarity=-0.154 Sum_probs=30.5
Q ss_pred CC-eEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Q 004879 332 GL-HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 332 ~M-kILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP 374 (725)
.| |++++.. -+|+ ..-.+.-..+++.++...||+|.|+.-
T Consensus 4 ~Mkk~~ivv~-~~P~--g~~~~~~al~~a~a~~a~~~~v~Vff~ 44 (136)
T 2hy5_B 4 VVKKFMYLNR-KAPY--GTIYAWEALEVVLIGAAFDQDVCVLFL 44 (136)
T ss_dssp -CCEEEEEEC-SCTT--TSSHHHHHHHHHHHHGGGCCEEEEEEC
T ss_pred chhEEEEEEe-CCCC--CcHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 36 4888875 4676 234677789999999999999999963
No 268
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=25.89 E-value=74 Score=31.51 Aligned_cols=39 Identities=18% Similarity=0.174 Sum_probs=28.5
Q ss_pred CCeEEEEcCccCCCCCCCcH-HHHHHHHHHHHHHCCCeEEEEee
Q 004879 332 GLHVIHIAAEMAPVAKVGGL-GDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 332 ~MkILhIs~E~~P~~kvGGl-g~vV~~LaraL~~~GHeV~VItP 374 (725)
.|||++|.. .|. .+|. ..++....+++.+.||+|+++-.
T Consensus 1 ~mkiLiI~g--spr--~~S~t~~l~~~~~~~l~~~g~ev~~~dL 40 (228)
T 3tem_A 1 GKKVLIVYA--HQE--PKSFNGSLKNVAVDELSRQGCTVTVSDL 40 (228)
T ss_dssp CCEEEEEEC--CSC--TTSHHHHHHHHHHHHHHHHTCEEEEEET
T ss_pred CCEEEEEEe--CCC--CCCHHHHHHHHHHHHHHHCCCEEEEEEh
Confidence 489999987 453 3554 45555678888888999999853
No 269
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=25.74 E-value=6.5e+02 Score=27.91 Aligned_cols=33 Identities=6% Similarity=0.129 Sum_probs=22.9
Q ss_pred hhhhhhhccchhHHHHHHHHhhhhhhhhhHHHH
Q 004879 74 DSLKTENLSLKNDIKVLKAELNSVKDADERVVM 106 (725)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (725)
..|-+-+.-.++-|+.||..|.+...+-..+..
T Consensus 54 glL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~ 86 (491)
T 1m1j_A 54 GIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNR 86 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHH
Confidence 445566677888888888888877666554433
No 270
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=25.66 E-value=4e+02 Score=24.63 Aligned_cols=51 Identities=27% Similarity=0.342 Sum_probs=29.8
Q ss_pred hhhhhhccchhHHHHHHHHhhhh----hhhhhHHHHHHhhhhhHHhhHHHHHhhh
Q 004879 75 SLKTENLSLKNDIKVLKAELNSV----KDADERVVMLEMERSSLESSLKELESKL 125 (725)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (725)
.++.||--|+...+.++.++... .+....+..|+.+...|...+++++.+.
T Consensus 26 ~l~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~~~~ 80 (155)
T 2oto_A 26 RLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDY 80 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666665544432 3444555666666666666666665433
No 271
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Probab=25.65 E-value=33 Score=35.34 Aligned_cols=34 Identities=26% Similarity=0.078 Sum_probs=23.5
Q ss_pred CCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 332 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 332 ~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
+|+|++. ||.|.+-..|+++|.+.||+|.++...
T Consensus 9 ~~~vlVt----------GatG~iG~~l~~~L~~~g~~V~~~~r~ 42 (357)
T 1rkx_A 9 GKRVFVT----------GHTGFKGGWLSLWLQTMGATVKGYSLT 42 (357)
T ss_dssp TCEEEEE----------TTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEE----------CCCchHHHHHHHHHHhCCCeEEEEeCC
Confidence 4677665 444444456778888999999888643
No 272
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=25.62 E-value=1.1e+02 Score=30.63 Aligned_cols=41 Identities=7% Similarity=-0.031 Sum_probs=29.4
Q ss_pred CCCCCeEEEEcCccCCCCCCCcH-HHHHHHHHHHHHHCCCeEEEEe
Q 004879 329 ISSGLHVIHIAAEMAPVAKVGGL-GDVVAGLGKALQKKGHLVEIVL 373 (725)
Q Consensus 329 ~~~~MkILhIs~E~~P~~kvGGl-g~vV~~LaraL~~~GHeV~VIt 373 (725)
.+.+|||++|+.. |. .+|. ..++..+++.+.+.|++|+++-
T Consensus 31 ~~~~mkIliI~GS--~r--~~s~t~~La~~~~~~l~~~g~eve~id 72 (247)
T 2q62_A 31 STHRPRILILYGS--LR--TVSYSRLLAEEARRLLEFFGAEVKVFD 72 (247)
T ss_dssp CCSCCEEEEEECC--CC--SSCHHHHHHHHHHHHHHHTTCEEEECC
T ss_pred cCCCCeEEEEEcc--CC--CCCHHHHHHHHHHHHHhhCCCEEEEEE
Confidence 3456899999874 33 2454 4555668888888899999883
No 273
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=25.56 E-value=92 Score=29.66 Aligned_cols=38 Identities=11% Similarity=0.037 Sum_probs=31.1
Q ss_pred CCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Q 004879 332 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 332 ~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP 374 (725)
.|||++|.. .| .|-...++..+++.+.+.|++|+++-.
T Consensus 6 mmkilii~~--S~---~g~T~~la~~i~~~l~~~g~~v~~~~l 43 (211)
T 1ydg_A 6 PVKLAIVFY--SS---TGTGYAMAQEAAEAGRAAGAEVRLLKV 43 (211)
T ss_dssp CCEEEEEEC--CS---SSHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCeEEEEEE--CC---CChHHHHHHHHHHHHhcCCCEEEEEec
Confidence 579999975 33 477788888899999999999999853
No 274
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=25.55 E-value=59 Score=32.27 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=23.7
Q ss_pred CCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 331 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 331 ~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
++|+|+++. .|++| ..|+++|.+.||+|.++...
T Consensus 2 ~~~~ilVtG--------aG~iG---~~l~~~L~~~g~~V~~~~r~ 35 (286)
T 3gpi_A 2 SLSKILIAG--------CGDLG---LELARRLTAQGHEVTGLRRS 35 (286)
T ss_dssp CCCCEEEEC--------CSHHH---HHHHHHHHHTTCCEEEEECT
T ss_pred CCCcEEEEC--------CCHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 346777652 24444 46788889999999999754
No 275
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}
Probab=25.41 E-value=59 Score=30.38 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=22.6
Q ss_pred CCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 332 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 332 ~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
+|||++... .||+|. .+++.|. +|++|.++...
T Consensus 3 kM~vlVtGa-------sg~iG~---~~~~~l~-~g~~V~~~~r~ 35 (202)
T 3d7l_A 3 AMKILLIGA-------SGTLGS---AVKERLE-KKAEVITAGRH 35 (202)
T ss_dssp SCEEEEETT-------TSHHHH---HHHHHHT-TTSEEEEEESS
T ss_pred CcEEEEEcC-------CcHHHH---HHHHHHH-CCCeEEEEecC
Confidence 478666532 466664 5677888 89999887643
No 276
>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*
Probab=25.38 E-value=68 Score=34.03 Aligned_cols=41 Identities=10% Similarity=0.011 Sum_probs=34.2
Q ss_pred CCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCC
Q 004879 332 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 376 (725)
Q Consensus 332 ~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y 376 (725)
+++ +-|+.-|.| ++|- +.++..+..++.+.|.+|.+++|..
T Consensus 166 ~l~-l~ia~a~~~--~vGD-~rva~Sl~~~~~~~G~~v~~~~P~~ 206 (324)
T 1js1_X 166 RPK-VVMTWAPHP--RPLP-QAVPNSFAEWMNATDYEFVITHPEG 206 (324)
T ss_dssp SCE-EEEECCCCS--SCCC-SHHHHHHHHHHHTSSSEEEEECCTT
T ss_pred Cee-EEEEEEccc--ccCC-cchHHHHHHHHHHCCCEEEEeCCcc
Confidence 467 777764555 5888 9999999999999999999999973
No 277
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Probab=25.26 E-value=51 Score=32.77 Aligned_cols=32 Identities=25% Similarity=0.198 Sum_probs=23.1
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
|||.+|. .|.+-..++..|.+.||+|+++...
T Consensus 1 m~i~iiG-----------~G~~G~~~a~~l~~~g~~V~~~~r~ 32 (291)
T 1ks9_A 1 MKITVLG-----------CGALGQLWLTALCKQGHEVQGWLRV 32 (291)
T ss_dssp CEEEEEC-----------CSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CeEEEEC-----------cCHHHHHHHHHHHhCCCCEEEEEcC
Confidence 6777773 2444457788889999999988543
No 278
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=25.20 E-value=1.7e+02 Score=27.60 Aligned_cols=52 Identities=23% Similarity=0.180 Sum_probs=31.0
Q ss_pred HhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHH-------HHHHhhhhhhH
Q 004879 115 ESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGL-------LAKATKQADQA 166 (725)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 166 (725)
++.+.++|.|+..+|.-++.|.|=.-++..+-..++.+..= +++||+-++.|
T Consensus 75 ~~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~kA~~A~~~a 133 (158)
T 3tul_A 75 KSVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDKATDATVKA 133 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888899999999999998887777666666655543 44555544444
No 279
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=25.12 E-value=48 Score=34.25 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=28.2
Q ss_pred CCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCC
Q 004879 332 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 376 (725)
Q Consensus 332 ~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y 376 (725)
.++|++| |.|.+....++.|.+.|+.|+||.|..
T Consensus 13 ~k~VLVV-----------GgG~va~rka~~Ll~~Ga~VtViap~~ 46 (274)
T 1kyq_A 13 DKRILLI-----------GGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (274)
T ss_dssp TCEEEEE-----------EESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred CCEEEEE-----------CCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 4677776 446788999999999999999999874
No 280
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=25.10 E-value=65 Score=22.93 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=17.5
Q ss_pred HhhhhHHHHHHHHHHHHhHhh
Q 004879 169 VLQQNQELRKKVDKLEESLDE 189 (725)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~ 189 (725)
.++.|.+|++.|.+|++.|.+
T Consensus 13 Ll~~~~~Le~EV~RLk~ll~~ 33 (34)
T 3c3f_A 13 ILSXLYHXENEXARIXKLLXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHhhhhHHHHHHHHHHHHHhc
Confidence 578899999999999988754
No 281
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=25.05 E-value=1.1e+02 Score=27.61 Aligned_cols=42 Identities=2% Similarity=-0.116 Sum_probs=31.1
Q ss_pred CCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 331 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 331 ~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
..+|+++|... .|+ ...-......++.+..+.||+|.|+.-.
T Consensus 14 ~~~kl~ii~~s-gP~--~~~~~~~al~lA~~A~a~g~eV~vFf~~ 55 (134)
T 3mc3_A 14 QXXXILIVVTH-GPE--DLDRTYAPLFMASISASMEYETSVFFMI 55 (134)
T ss_dssp CCCEEEEEECC-CGG--GTHHHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred ccceEEEEEcc-CCC--CHHHHHHHHHHHHHHHHCCCCEEEEEEe
Confidence 34688888775 554 3455666777888888999999998754
No 282
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=25.00 E-value=59 Score=33.06 Aligned_cols=38 Identities=13% Similarity=0.116 Sum_probs=29.4
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDC 378 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~ 378 (725)
||||+....- =.+.-+..|.++|.+.| +|.|+.|....
T Consensus 1 M~ILlTNDDG-------i~apGi~aL~~~l~~~g-~V~VVAP~~~~ 38 (244)
T 2e6c_A 1 MRILVTNDDG-------IYSPGLWALAEAASQFG-EVFVAAPDTEQ 38 (244)
T ss_dssp CEEEEECSSC-------TTCHHHHHHHHHHTTTS-EEEEEEECSSC
T ss_pred CeEEEEcCCC-------CCcHhHHHHHHHHHhCC-CEEEEecCCCC
Confidence 7998888753 22455788899998888 99999998654
No 283
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=24.95 E-value=68 Score=34.69 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=5.3
Q ss_pred HHhHHHHHHHHHHHhh
Q 004879 21 ELLEDQLQKLQHELTH 36 (725)
Q Consensus 21 ~~~~~~~~~~~~~~~~ 36 (725)
+-+++.++.|..+|+.
T Consensus 20 ~~~~~r~~el~~~l~~ 35 (371)
T 1zbt_A 20 QAVEDRYEELGELLSD 35 (371)
T ss_dssp HHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4455555555555544
No 284
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=24.93 E-value=96 Score=28.85 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=27.8
Q ss_pred CeEEEEcCccCCCCCCCcH--HHHHHHHHHHHHHCCCeEEEEee
Q 004879 333 LHVIHIAAEMAPVAKVGGL--GDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGl--g~vV~~LaraL~~~GHeV~VItP 374 (725)
|||+.|+.. .||. .+.+..|+.+|+++|+.|.+|=.
T Consensus 1 M~vi~v~s~------kgG~GKTt~a~~la~~la~~g~~vlliD~ 38 (206)
T 4dzz_A 1 MKVISFLNP------KGGSGKTTAVINIATALSRSGYNIAVVDT 38 (206)
T ss_dssp CEEEEECCS------STTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEEeC------CCCccHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 788888752 3555 56677899999999999998843
No 285
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A {Helicobacter pylori}
Probab=24.77 E-value=2.1e+02 Score=31.15 Aligned_cols=54 Identities=30% Similarity=0.292 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHhh-------hhhhHH-------HHhhhhHHHHHHHHHHHHhHhhhhhHHHhHH
Q 004879 145 LYEKVENLQGLLAKATK-------QADQAI-------SVLQQNQELRKKVDKLEESLDEANIYKLSSE 198 (725)
Q Consensus 145 ~~~~~~~~~~~~~~~~~-------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (725)
|-+|+++|-..+..+.+ .++||+ .=|..||+|.+|||.|-..+-|+....-|+-
T Consensus 480 V~aKIDNLNQaaSefKnGKngDFSkVgQAlsdLKnSkvgLsrnQELtqKIdNLNQAVSEAKatgdFsn 547 (569)
T 4dvz_A 480 WISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQKVTDKVDNLNQAVSVAKAMGDFSR 547 (569)
T ss_dssp HHHHHHHHHHHHHHHHTC---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTHH
T ss_pred HHHhHHHHHHHHHHhcCCCccCcchhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhcCChhH
Confidence 67888888777754333 233433 3567899999999999999999998777874
No 286
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=24.66 E-value=1.8e+02 Score=24.15 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 004879 229 VQLYQESVKEFQDTLHSL 246 (725)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~ 246 (725)
|+.....|.++|.-||++
T Consensus 49 L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 49 LDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333444455566666655
No 287
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=24.63 E-value=1.5e+02 Score=25.97 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=21.3
Q ss_pred hhhhhccccchhhhhhHHHHHHHHHHHHHHHhhh
Q 004879 129 QEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQ 162 (725)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (725)
.+|.+-|.| +.-++.|..|+..|+.-+++++.+
T Consensus 5 ~~d~s~LPp-eqRkkkL~~Ki~el~~ei~ke~~~ 37 (98)
T 2ke4_A 5 TEDFSHLPP-EQQRKRLQQQLEERSRELQKEVDQ 37 (98)
T ss_dssp CSCSSSSCH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhccCCH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555544 334667888888888888776655
No 288
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=24.59 E-value=99 Score=25.76 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=31.1
Q ss_pred HHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchh
Q 004879 90 LKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQE 130 (725)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (725)
|+.+..+...-|+++..||++-+..++-+++|-+++...|.
T Consensus 28 L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 28 LQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44445566677888999999999998888888887765544
No 289
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=24.56 E-value=62 Score=33.08 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=30.0
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDC 378 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~ 378 (725)
||||+....- =.+.-+..|.++|.+.| +|.|+.|....
T Consensus 2 M~ILlTNDDG-------i~apGi~aL~~~l~~~g-~V~VVAP~~~~ 39 (251)
T 2phj_A 2 PTFLLVNDDG-------YFSPGINALREALKSLG-RVVVVAPDRNL 39 (251)
T ss_dssp CEEEEECSSC-------TTCHHHHHHHHHHTTTS-EEEEEEESSCC
T ss_pred CEEEEECCCC-------CCCHHHHHHHHHHHhcC-CEEEEecCCCc
Confidence 8999988753 22456788999999998 99999998554
No 290
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=24.54 E-value=33 Score=37.53 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=30.3
Q ss_pred CCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHC--CCeEEEEeeCCC
Q 004879 332 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKK--GHLVEIVLPKYD 377 (725)
Q Consensus 332 ~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~--GHeV~VItP~y~ 377 (725)
++||+++.. | .+|=-.=..+|++.|+.+ ||.|+++++...
T Consensus 9 ~~~vv~~p~---p---~~GHi~P~l~La~~L~~r~pG~~Vt~v~t~~~ 50 (463)
T 2acv_A 9 NSELIFIPA---P---GIGHLASALEFAKLLTNHDKNLYITVFCIKFP 50 (463)
T ss_dssp CEEEEEECC---S---STTTHHHHHHHHHHHHHTCTTEEEEEEECCCT
T ss_pred CCEEEEEcC---c---ccchHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Confidence 468888853 2 344446677899999998 999999987643
No 291
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=24.47 E-value=36 Score=26.65 Aligned_cols=35 Identities=14% Similarity=0.377 Sum_probs=8.8
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHH
Q 004879 87 IKVLKAELNSVKDADERVVMLEMERSSLESSLKEL 121 (725)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (725)
++|+|.-|.....+..-+-.|..|.+.|.+.+.+|
T Consensus 4 lefIk~~LG~~~p~~~d~eaLk~E~~eLk~k~~~L 38 (53)
T 2yy0_A 4 LDFLKHHLGAATPENPEIELLRLELAEMKEKYEAI 38 (53)
T ss_dssp ------------CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHHHH
Confidence 33444444333333333333444444433333333
No 292
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=24.42 E-value=42 Score=27.01 Aligned_cols=30 Identities=23% Similarity=0.352 Sum_probs=20.6
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhh
Q 004879 68 SFSKELDSLKTENLSLKNDIKVLKAELNSV 97 (725)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (725)
.+..+...|+.+|..|+..|..|+.++...
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777778877777777766665443
No 293
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=24.33 E-value=81 Score=29.63 Aligned_cols=37 Identities=16% Similarity=0.254 Sum_probs=30.3
Q ss_pred CCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Q 004879 332 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 332 ~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP 374 (725)
.|||++|... .|-...++..+++.+.+.|++|+++-.
T Consensus 4 mmkilii~~S------~g~T~~la~~i~~~l~~~g~~v~~~~l 40 (199)
T 2zki_A 4 KPNILVLFYG------YGSIVELAKEIGKGAEEAGAEVKIRRV 40 (199)
T ss_dssp CCEEEEEECC------SSHHHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred CcEEEEEEeC------ccHHHHHHHHHHHHHHhCCCEEEEEeh
Confidence 4799999764 467788888899999989999999853
No 294
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=24.33 E-value=6.9e+02 Score=26.87 Aligned_cols=27 Identities=19% Similarity=0.057 Sum_probs=12.1
Q ss_pred HhHHHHHHHHHHHHHHHhhhchHHHHH
Q 004879 201 QQYNELMQQKMKLLEERLQRSDEEIHS 227 (725)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (725)
.+....++.++..++|.-++...++..
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (487)
T 3oja_A 434 IRDWDMYQHKETQLAEENARLKKLNGE 460 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHhhhhhhhhhh
Confidence 334444555555555533333333333
No 295
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=24.26 E-value=3.1e+02 Score=23.71 Aligned_cols=60 Identities=17% Similarity=0.274 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhHhhhhh-HHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 004879 176 LRKKVDKLEESLDEANI-YKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQES 235 (725)
Q Consensus 176 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (725)
.+..++.+|.-|.-..- ..++..++.....-.++=..+|..++...|++++.+=+.|...
T Consensus 24 Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~ 84 (93)
T 3t98_B 24 YRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSY 84 (93)
T ss_dssp HHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666665554221 3344566666666777788999999999999999998888877
No 296
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A
Probab=24.03 E-value=65 Score=32.67 Aligned_cols=26 Identities=38% Similarity=0.409 Sum_probs=19.2
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEee
Q 004879 349 GGLGDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 349 GGlg~vV~~LaraL~~~GHeV~VItP 374 (725)
||.|..-..|++.|.+.||+|.++..
T Consensus 16 GatGfIG~~l~~~Ll~~G~~V~~~~r 41 (338)
T 2rh8_A 16 GGTGFVASLLVKLLLQKGYAVNTTVR 41 (338)
T ss_dssp CTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCchHHHHHHHHHHHHCCCEEEEEEc
Confidence 44555556678889999999987754
No 297
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=24.03 E-value=65 Score=32.83 Aligned_cols=38 Identities=13% Similarity=0.157 Sum_probs=29.2
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDC 378 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~ 378 (725)
||||+....-. .+.-+..|.++|.+.| +|.|+.|....
T Consensus 1 M~ILlTNDDGi-------~apGi~aL~~~l~~~g-~V~VVAP~~~~ 38 (247)
T 1j9j_A 1 MRILVTNDDGI-------QSKGIIVLAELLSEEH-EVFVVAPDKER 38 (247)
T ss_dssp CEEEEECSSCT-------TCHHHHHHHHHHTTTS-EEEEEEESSCC
T ss_pred CeEEEEcCCCC-------CcHhHHHHHHHHHhCC-CEEEEecCCCC
Confidence 79988887532 2355778889998888 99999998654
No 298
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Probab=24.02 E-value=44 Score=34.48 Aligned_cols=32 Identities=16% Similarity=0.346 Sum_probs=24.3
Q ss_pred CCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCC-eEEEEee
Q 004879 332 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGH-LVEIVLP 374 (725)
Q Consensus 332 ~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GH-eV~VItP 374 (725)
.|||.+| |+|.+-..+++.|.+.|| +|.++-+
T Consensus 24 ~~~I~iI-----------G~G~mG~~~A~~L~~~G~~~V~~~dr 56 (312)
T 3qsg_A 24 AMKLGFI-----------GFGEAASAIASGLRQAGAIDMAAYDA 56 (312)
T ss_dssp -CEEEEE-----------CCSHHHHHHHHHHHHHSCCEEEEECS
T ss_pred CCEEEEE-----------CccHHHHHHHHHHHHCCCCeEEEEcC
Confidence 4788888 345566788999999999 8888754
No 299
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=23.94 E-value=1.6e+02 Score=24.91 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=7.7
Q ss_pred HHhhhhhHHhhHHHHHhhh
Q 004879 107 LEMERSSLESSLKELESKL 125 (725)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~ 125 (725)
|+++-..|++.+.+|+.++
T Consensus 27 le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 27 LPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444
No 300
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=23.87 E-value=1.6e+02 Score=26.23 Aligned_cols=54 Identities=24% Similarity=0.316 Sum_probs=34.6
Q ss_pred HHHhhhhhHHhhHHHHHhhhhcchhhhhc--cccchhhhhhHHHHHHHHHHHHHHH
Q 004879 106 MLEMERSSLESSLKELESKLSISQEDVAK--LSTLKVECKDLYEKVENLQGLLAKA 159 (725)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (725)
..|++-..-..+|++-|+.+..-..||.| +..++.+..++.+|...|+.+|+-+
T Consensus 46 ~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 46 AHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556677777777777777655 3455666667777777777776654
No 301
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=23.82 E-value=62 Score=33.06 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=22.5
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEee
Q 004879 349 GGLGDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 349 GGlg~vV~~LaraL~~~GHeV~VItP 374 (725)
||+|.+-..+++.|.+.||+|.++.+
T Consensus 28 Gg~G~mG~~la~~l~~~G~~V~~~~~ 53 (298)
T 2pv7_A 28 GGYGKLGGLFARYLRASGYPISILDR 53 (298)
T ss_dssp TTTSHHHHHHHHHHHTTTCCEEEECT
T ss_pred cCCCHHHHHHHHHHHhCCCeEEEEEC
Confidence 66888888999999999999998854
No 302
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=23.80 E-value=91 Score=33.49 Aligned_cols=17 Identities=24% Similarity=0.491 Sum_probs=10.6
Q ss_pred HHHhHHHHHHHHHHHhh
Q 004879 20 VELLEDQLQKLQHELTH 36 (725)
Q Consensus 20 ~~~~~~~~~~~~~~~~~ 36 (725)
++-+++.++.|..+|+.
T Consensus 5 l~~~~~r~~el~~~~~~ 21 (354)
T 3d5a_X 5 LDRLEEEYRELEALLSD 21 (354)
T ss_dssp HHHHTHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 44566667777666655
No 303
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=23.79 E-value=1.1e+02 Score=22.14 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=18.0
Q ss_pred HhhhhHHHHHHHHHHHHhHhhh
Q 004879 169 VLQQNQELRKKVDKLEESLDEA 190 (725)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~ 190 (725)
.++.|.+|+++|.+|++.|.+.
T Consensus 13 Ll~~~~~Le~eV~RLk~ll~~~ 34 (36)
T 1kd8_B 13 LKSKLWHLKNKVARLKKKNAEC 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhccc
Confidence 4677889999999999888764
No 304
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=23.65 E-value=68 Score=30.49 Aligned_cols=24 Identities=13% Similarity=0.110 Sum_probs=17.9
Q ss_pred CCcHHHHHHHHHHHHH-HCCCeEEEEee
Q 004879 348 VGGLGDVVAGLGKALQ-KKGHLVEIVLP 374 (725)
Q Consensus 348 vGGlg~vV~~LaraL~-~~GHeV~VItP 374 (725)
.||+| ..+++.|. +.||+|.++..
T Consensus 14 sg~iG---~~~~~~l~~~~g~~V~~~~r 38 (221)
T 3r6d_A 14 AGQIA---QXLTATLLTYTDMHITLYGR 38 (221)
T ss_dssp TSHHH---HHHHHHHHHHCCCEEEEEES
T ss_pred CcHHH---HHHHHHHHhcCCceEEEEec
Confidence 46666 56677888 89999988864
No 305
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=23.46 E-value=57 Score=33.62 Aligned_cols=32 Identities=19% Similarity=0.111 Sum_probs=23.3
Q ss_pred CCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Q 004879 332 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 332 ~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP 374 (725)
+|||.+|. .|.+|. .++..|.+.||+|.++..
T Consensus 4 ~mki~iiG--------~G~~G~---~~a~~L~~~g~~V~~~~r 35 (359)
T 1bg6_A 4 SKTYAVLG--------LGNGGH---AFAAYLALKGQSVLAWDI 35 (359)
T ss_dssp CCEEEEEC--------CSHHHH---HHHHHHHHTTCEEEEECS
T ss_pred cCeEEEEC--------CCHHHH---HHHHHHHhCCCEEEEEeC
Confidence 48998884 255554 467788889999988753
No 306
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=23.45 E-value=66 Score=33.00 Aligned_cols=32 Identities=31% Similarity=0.340 Sum_probs=24.9
Q ss_pred CCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Q 004879 331 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVL 373 (725)
Q Consensus 331 ~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VIt 373 (725)
..|+|.+| |+|.+-..+++.|.+.||+|.++-
T Consensus 8 ~~~~IgiI-----------G~G~mG~~~A~~l~~~G~~V~~~d 39 (306)
T 3l6d_A 8 FEFDVSVI-----------GLGAMGTIMAQVLLKQGKRVAIWN 39 (306)
T ss_dssp CSCSEEEE-----------CCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCeEEEE-----------CCCHHHHHHHHHHHHCCCEEEEEe
Confidence 45788887 445666788999999999998874
No 307
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Probab=23.35 E-value=59 Score=32.65 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=17.9
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEe
Q 004879 349 GGLGDVVAGLGKALQKKGHLVEIVL 373 (725)
Q Consensus 349 GGlg~vV~~LaraL~~~GHeV~VIt 373 (725)
||.|-.-..+++.|.+.||+|.++.
T Consensus 7 GatG~iG~~l~~~L~~~G~~V~~~~ 31 (311)
T 2p5y_A 7 GGAGFIGSHIVEDLLARGLEVAVLD 31 (311)
T ss_dssp TTTSHHHHHHHHHHHTTTCEEEEEC
T ss_pred eCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 4444444567888999999998874
No 308
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=23.32 E-value=73 Score=27.10 Aligned_cols=41 Identities=17% Similarity=0.264 Sum_probs=20.1
Q ss_pred HHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHh
Q 004879 107 LEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKAT 160 (725)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (725)
|...++.|+.+|+|+|.++...-+ ++..++..|..-|..+.
T Consensus 8 L~~q~~~Le~~l~e~E~~~~~~l~-------------~~q~~i~~lE~el~~~r 48 (86)
T 1x8y_A 8 LQCQLAAKEAKLRDLEDSLARERD-------------TSRRLLAEKEREMAEMR 48 (86)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHH
Confidence 444455666677777765543211 34455555555555543
No 309
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=23.23 E-value=2.1e+02 Score=30.22 Aligned_cols=20 Identities=25% Similarity=0.327 Sum_probs=8.1
Q ss_pred hhhhhhhhhccchhHHHHHH
Q 004879 72 ELDSLKTENLSLKNDIKVLK 91 (725)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~ 91 (725)
++..||.+...++.-+..++
T Consensus 222 ~l~~lrr~l~~lrr~l~p~~ 241 (363)
T 2iub_A 222 RTHQLKRNLVELRKTIWPLR 241 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333333
No 310
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Probab=23.00 E-value=62 Score=33.73 Aligned_cols=25 Identities=36% Similarity=0.171 Sum_probs=20.9
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEe
Q 004879 349 GGLGDVVAGLGKALQKKGHLVEIVL 373 (725)
Q Consensus 349 GGlg~vV~~LaraL~~~GHeV~VIt 373 (725)
||.|.+-..+++.|.+.||+|.++.
T Consensus 18 G~tGfIG~~l~~~L~~~G~~V~~~~ 42 (404)
T 1i24_A 18 GGDGYCGWATALHLSKKNYEVCIVD 42 (404)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCcHHHHHHHHHHHhCCCeEEEEE
Confidence 6667777788999999999998884
No 311
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=22.97 E-value=5.1e+02 Score=24.85 Aligned_cols=126 Identities=20% Similarity=0.183 Sum_probs=73.5
Q ss_pred HHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHh-----hhhhhHHHHhhhh-HHHH
Q 004879 104 VVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKAT-----KQADQAISVLQQN-QELR 177 (725)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~ 177 (725)
...||+|..-|..--.+...... +..+|...|...||+-| ++.-.+|.+|... .++.
T Consensus 29 ~~~le~ek~~l~~~e~~r~k~~~-----------------h~~~k~~qlre~~d~gtt~~~i~~m~~yI~llrErea~lE 91 (169)
T 3k29_A 29 RRLLELEQEKLRERESERDKVKN-----------------HYMQKIRQLREQLDDGTTSDAILKMKAYIKVVAIQLSEEE 91 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777665544444433322 45688999999999754 5666677777654 5777
Q ss_pred HHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH--HHHHHHHHhhhhHHhh
Q 004879 178 KKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQE--SVKEFQDTLHSLKEES 250 (725)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 250 (725)
.+|++..+-++.+. +.--.++++....-++.-|. +. .......-......|+. .++||.+++..+-.-.
T Consensus 92 qkVaeq~e~Ve~e~--q~Le~ar~el~qArke~eKf-el-HrqiwqaE~kre~E~qEElEqEEf~s~~~~~~~~k 162 (169)
T 3k29_A 92 EKVNKQKENVLAAS--KELERAEVELTKRRKEEEKT-RL-HKEEWMKEALKEEARQEEKEQDEMGQLLHQLHKQK 162 (169)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 88888877776553 33334444444443333333 33 33322222334444555 3889999888765433
No 312
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}
Probab=22.93 E-value=68 Score=32.34 Aligned_cols=26 Identities=31% Similarity=0.303 Sum_probs=19.6
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEee
Q 004879 349 GGLGDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 349 GGlg~vV~~LaraL~~~GHeV~VItP 374 (725)
||.|..-..+++.|.+.||+|.++..
T Consensus 8 GatG~iG~~l~~~L~~~g~~V~~~~r 33 (330)
T 2c20_A 8 GGAGYIGSHAVKKLVDEGLSVVVVDN 33 (330)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCcHHHHHHHHHHHhCCCEEEEEeC
Confidence 45555556778889999999998863
No 313
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=22.82 E-value=43 Score=33.71 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=23.0
Q ss_pred CCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Q 004879 332 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 332 ~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP 374 (725)
.|+|+++ ||.|.+-..|++.|.+.||+|.++..
T Consensus 3 ~~~ilVt----------GatG~iG~~l~~~L~~~g~~v~~~~r 35 (321)
T 1e6u_A 3 KQRVFIA----------GHRGMVGSAIRRQLEQRGDVELVLRT 35 (321)
T ss_dssp CEEEEEE----------TTTSHHHHHHHHHHTTCTTEEEECCC
T ss_pred CCEEEEE----------CCCcHHHHHHHHHHHhCCCeEEEEec
Confidence 4677655 44455556678889999999887653
No 314
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=22.77 E-value=1e+02 Score=30.46 Aligned_cols=35 Identities=14% Similarity=0.127 Sum_probs=26.5
Q ss_pred CeEEEEcCccCCCCCCCcH-HHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 333 LHVIHIAAEMAPVAKVGGL-GDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGl-g~vV~~LaraL~~~GHeV~VItP~ 375 (725)
+||+...+ ||. ..+..+|.+.|.+.|++|+|++..
T Consensus 5 k~IllgvT--------Gaiaa~k~~~ll~~L~~~g~eV~vv~T~ 40 (209)
T 3zqu_A 5 ERITLAMT--------GASGAQYGLRLLDCLVQEEREVHFLISK 40 (209)
T ss_dssp SEEEEEEC--------SSSCHHHHHHHHHHHHHTTCEEEEEECH
T ss_pred CEEEEEEE--------CHHHHHHHHHHHHHHHHCCCEEEEEECc
Confidence 47776643 443 456778999999999999999754
No 315
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=22.72 E-value=3.6e+02 Score=24.13 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=15.8
Q ss_pred hhhhhhhccchhHHHHHHHHhhhh
Q 004879 74 DSLKTENLSLKNDIKVLKAELNSV 97 (725)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~ 97 (725)
..|+..|..|+.+.+.+|.++...
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~ 29 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQ 29 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777666543
No 316
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=22.67 E-value=44 Score=23.36 Aligned_cols=27 Identities=22% Similarity=0.588 Sum_probs=21.1
Q ss_pred hhhhhhhhhccchhHHHHHHHHhhhhh
Q 004879 72 ELDSLKTENLSLKNDIKVLKAELNSVK 98 (725)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (725)
.+..+|+|.....++|++.|.++..++
T Consensus 3 kiaaikeeqaaieeeiqaikeeiaaik 29 (36)
T 1bb1_B 3 KIAAIKEEQAAIEEEIQAIKEEIAAIK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888999888876654
No 317
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=22.66 E-value=71 Score=33.16 Aligned_cols=38 Identities=13% Similarity=0.077 Sum_probs=29.3
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDC 378 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~ 378 (725)
||||+....-. .+.-+..|.++|.+.| +|.|+.|....
T Consensus 1 M~ILlTNDDGi-------~ApGi~aL~~aL~~~g-~V~VVAP~~~q 38 (280)
T 1l5x_A 1 MKILVTNDDGV-------HSPGLRLLYQFALSLG-DVDVVAPESPK 38 (280)
T ss_dssp CEEEEECSSCT-------TCHHHHHHHHHHGGGS-EEEEEEESSCT
T ss_pred CeEEEEcCCCC-------CcHhHHHHHHHHHhCC-CEEEEecCCCC
Confidence 79998887532 2355778889998888 99999998654
No 318
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Probab=22.63 E-value=73 Score=33.11 Aligned_cols=33 Identities=27% Similarity=0.348 Sum_probs=22.9
Q ss_pred CCeEEEEcCccCCCCCCCcHHHHHHHHHHHHH-HCCCeEEEEee
Q 004879 332 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQ-KKGHLVEIVLP 374 (725)
Q Consensus 332 ~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~-~~GHeV~VItP 374 (725)
.|+|++... .|++| ..+++.|. +.||+|.++..
T Consensus 2 ~m~vlVTGa-------tG~iG---~~l~~~L~~~~g~~V~~~~r 35 (397)
T 1gy8_A 2 HMRVLVCGG-------AGYIG---SHFVRALLRDTNHSVVIVDS 35 (397)
T ss_dssp CCEEEEETT-------TSHHH---HHHHHHHHHHCCCEEEEEEC
T ss_pred CCEEEEECC-------CCHHH---HHHHHHHHHhCCCEEEEEec
Confidence 477766532 35555 56778888 89999998864
No 319
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=22.56 E-value=17 Score=28.82 Aligned_cols=30 Identities=10% Similarity=0.230 Sum_probs=18.9
Q ss_pred ccchhhHhhhhhhhhhccchhHHHHHHHHh
Q 004879 65 EIHSFSKELDSLKTENLSLKNDIKVLKAEL 94 (725)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (725)
.+..+..++..|..||..||+.++.|+++|
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344567778888888888888887777654
No 320
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=22.46 E-value=63 Score=31.90 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=20.1
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 349 GGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 349 GGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
|+ |..-..|+++|.+.||+|.++...
T Consensus 12 Ga-G~iG~~l~~~L~~~g~~V~~~~r~ 37 (286)
T 3ius_A 12 GH-GYTARVLSRALAPQGWRIIGTSRN 37 (286)
T ss_dssp TC-CHHHHHHHHHHGGGTCEEEEEESC
T ss_pred CC-cHHHHHHHHHHHHCCCEEEEEEcC
Confidence 44 556667888999999999998743
No 321
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=22.44 E-value=83 Score=26.45 Aligned_cols=14 Identities=57% Similarity=0.795 Sum_probs=7.4
Q ss_pred HHhhHHHHHhhhhc
Q 004879 114 LESSLKELESKLSI 127 (725)
Q Consensus 114 ~~~~~~~~~~~~~~ 127 (725)
|++.|.+||.|++-
T Consensus 12 le~Ri~~LE~klAf 25 (78)
T 3efg_A 12 LEARLVELETRLSF 25 (78)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555543
No 322
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=22.41 E-value=89 Score=30.65 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=26.4
Q ss_pred CeEEEEcCccCCCCCCCcH-HHHHHHHHHHHHHC-CCeEEEEeeC
Q 004879 333 LHVIHIAAEMAPVAKVGGL-GDVVAGLGKALQKK-GHLVEIVLPK 375 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGl-g~vV~~LaraL~~~-GHeV~VItP~ 375 (725)
|||+.-.+ ||. .....+|.+.|.+. |++|+||+..
T Consensus 1 ~~IllgvT--------Gsiaa~k~~~ll~~L~~~~g~~V~vv~T~ 37 (197)
T 1sbz_A 1 MKLIVGMT--------GATGAPLGVALLQALREMPNVETHLVMSK 37 (197)
T ss_dssp CEEEEEEC--------SSSCHHHHHHHHHHHHTCTTCEEEEEECH
T ss_pred CEEEEEEe--------ChHHHHHHHHHHHHHHhccCCEEEEEECc
Confidence 57766654 333 35788899999999 9999999754
No 323
>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Probab=22.25 E-value=71 Score=31.58 Aligned_cols=35 Identities=29% Similarity=0.379 Sum_probs=25.4
Q ss_pred CCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 330 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 330 ~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
...|||.+| |+|.+-..+++.|.+.||+|.+....
T Consensus 17 ~~~~kIgiI-----------G~G~mG~alA~~L~~~G~~V~~~~r~ 51 (245)
T 3dtt_A 17 FQGMKIAVL-----------GTGTVGRTMAGALADLGHEVTIGTRD 51 (245)
T ss_dssp --CCEEEEE-----------CCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred cCCCeEEEE-----------CCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 445788888 34566667899999999999887543
No 324
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=22.22 E-value=1.8e+02 Score=30.12 Aligned_cols=25 Identities=4% Similarity=-0.021 Sum_probs=13.4
Q ss_pred HHHHHHHHHhHhhhhhHHHhHHHHH
Q 004879 177 RKKVDKLEESLDEANIYKLSSEKMQ 201 (725)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (725)
++..++++..++...+++---+..+
T Consensus 97 ~~~~~r~~~L~~~~~~s~~~~~~a~ 121 (369)
T 4dk0_A 97 LSNYQRLSKLYGQKATSLDTLNTAK 121 (369)
T ss_dssp TTTHHHHHHGGGSSCSCGGGHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHH
Confidence 3445556666666666654444333
No 325
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=22.21 E-value=82 Score=26.82 Aligned_cols=17 Identities=29% Similarity=0.681 Sum_probs=10.7
Q ss_pred hhhHhhhhhhhhhccch
Q 004879 68 SFSKELDSLKTENLSLK 84 (725)
Q Consensus 68 ~~~~~~~~~~~~~~~~~ 84 (725)
++++||+.+|..|..+-
T Consensus 28 ~i~EELs~vr~~ni~~e 44 (81)
T 1wt6_A 28 SLSREMEAIRTDNQNFA 44 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34677777777665544
No 326
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=22.19 E-value=62 Score=31.37 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=22.5
Q ss_pred CCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Q 004879 331 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 331 ~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP 374 (725)
..|+|.+|. .|.+ -..+++.|.+.||+|.++.+
T Consensus 27 ~~~~I~iiG--------~G~~---G~~la~~l~~~g~~V~~~~r 59 (215)
T 2vns_A 27 EAPKVGILG--------SGDF---ARSLATRLVGSGFKVVVGSR 59 (215)
T ss_dssp --CCEEEEC--------CSHH---HHHHHHHHHHTTCCEEEEES
T ss_pred CCCEEEEEc--------cCHH---HHHHHHHHHHCCCEEEEEeC
Confidence 457888883 2444 45678888899999987753
No 327
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=21.99 E-value=20 Score=36.23 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=23.9
Q ss_pred CCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Q 004879 330 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVL 373 (725)
Q Consensus 330 ~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VIt 373 (725)
.+.|||.+|... .+| ..|+++|.+.||+|.++.
T Consensus 4 ~~~mkI~IIG~G-----~~G------~sLA~~L~~~G~~V~~~~ 36 (232)
T 3dfu_A 4 APRLRVGIFDDG-----SST------VNMAEKLDSVGHYVTVLH 36 (232)
T ss_dssp CCCCEEEEECCS-----CCC------SCHHHHHHHTTCEEEECS
T ss_pred CCCcEEEEEeeC-----HHH------HHHHHHHHHCCCEEEEec
Confidence 456899999642 133 458899999999887764
No 328
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Probab=21.90 E-value=77 Score=32.45 Aligned_cols=34 Identities=18% Similarity=-0.003 Sum_probs=23.3
Q ss_pred CCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 332 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 332 ~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
+|+|+++.. .|++| ..|++.|.+.||+|.++...
T Consensus 27 ~~~vlVtGa-------tG~iG---~~l~~~L~~~g~~V~~~~r~ 60 (352)
T 1sb8_A 27 PKVWLITGV-------AGFIG---SNLLETLLKLDQKVVGLDNF 60 (352)
T ss_dssp CCEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEEECC
T ss_pred CCeEEEECC-------CcHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 467765532 35555 56778888899999988643
No 329
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}
Probab=21.86 E-value=76 Score=32.35 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=18.8
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 349 GGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 349 GGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
||.|..-..+++.|.+.||+|.++...
T Consensus 28 GatG~iG~~l~~~L~~~g~~V~~~~r~ 54 (333)
T 2q1w_A 28 GICGQIGSHIAELLLERGDKVVGIDNF 54 (333)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCccHHHHHHHHHHHHCCCEEEEEECC
Confidence 333444456778888999999988643
No 330
>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*
Probab=21.83 E-value=69 Score=32.47 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=18.0
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEe
Q 004879 349 GGLGDVVAGLGKALQKKGHLVEIVL 373 (725)
Q Consensus 349 GGlg~vV~~LaraL~~~GHeV~VIt 373 (725)
||.|-.-..++++|.+.||+|.++.
T Consensus 7 GatG~iG~~l~~~L~~~G~~V~~~~ 31 (338)
T 1udb_A 7 GGSGYIGSHTCVQLLQNGHDVIILD 31 (338)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 3444444567888999999998875
No 331
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=21.75 E-value=58 Score=34.56 Aligned_cols=34 Identities=21% Similarity=0.181 Sum_probs=25.4
Q ss_pred CCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Q 004879 330 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 330 ~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP 374 (725)
+..|||.+|.. |.+-..++..|++.||+|.++..
T Consensus 27 ~~~mkI~VIGa-----------G~mG~alA~~La~~G~~V~l~~r 60 (356)
T 3k96_A 27 PFKHPIAILGA-----------GSWGTALALVLARKGQKVRLWSY 60 (356)
T ss_dssp CCCSCEEEECC-----------SHHHHHHHHHHHTTTCCEEEECS
T ss_pred ccCCeEEEECc-----------cHHHHHHHHHHHHCCCeEEEEeC
Confidence 34589988842 44555688889999999998864
No 332
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=21.68 E-value=74 Score=22.69 Aligned_cols=21 Identities=14% Similarity=0.452 Sum_probs=16.9
Q ss_pred HhhhhHHHHHHHHHHHHhHhh
Q 004879 169 VLQQNQELRKKVDKLEESLDE 189 (725)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~ 189 (725)
.++.|++|++.|.+|++.|.+
T Consensus 13 Ll~~~~~L~~EV~RLk~lL~~ 33 (34)
T 2bni_A 13 ILSKGHHICNELARIKKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHC--
T ss_pred HHHccHHHHHHHHHHHHHhcc
Confidence 578899999999999988754
No 333
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Probab=21.55 E-value=64 Score=32.38 Aligned_cols=26 Identities=23% Similarity=-0.014 Sum_probs=18.7
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEee
Q 004879 349 GGLGDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 349 GGlg~vV~~LaraL~~~GHeV~VItP 374 (725)
||.|..-..+++.|.+.||+|.++..
T Consensus 19 GatG~iG~~l~~~L~~~G~~V~~~~r 44 (321)
T 2pk3_A 19 GVAGFVGKYLANHLTEQNVEVFGTSR 44 (321)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEec
Confidence 44444445678888899999988753
No 334
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=21.53 E-value=3.8e+02 Score=22.85 Aligned_cols=34 Identities=18% Similarity=0.456 Sum_probs=24.1
Q ss_pred hHHHHHH-HHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhH
Q 004879 144 DLYEKVE-NLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESL 187 (725)
Q Consensus 144 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (725)
..|+.+. .=|..|.. +|++|.+|++.|+.|++-+
T Consensus 28 ~YWk~lAE~RR~AL~e----------aL~EN~~Lh~~ie~l~eEi 62 (83)
T 1uii_A 28 QYWKEVAEKRRKALYE----------ALKENEKLHKEIEQKDNEI 62 (83)
T ss_dssp HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Confidence 4677654 34444444 7999999999999987644
No 335
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=21.53 E-value=54 Score=33.43 Aligned_cols=34 Identities=12% Similarity=0.193 Sum_probs=22.2
Q ss_pred CCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Q 004879 331 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 331 ~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP 374 (725)
++|+|+++ ||.|..-..|+++|.+.|+.+.|+..
T Consensus 23 ~~~~vlVt----------GatG~iG~~l~~~L~~~g~~~~v~~~ 56 (346)
T 4egb_A 23 NAMNILVT----------GGAGFIGSNFVHYMLQSYETYKIINF 56 (346)
T ss_dssp -CEEEEEE----------TTTSHHHHHHHHHHHHHCTTEEEEEE
T ss_pred CCCeEEEE----------CCccHHHHHHHHHHHhhCCCcEEEEE
Confidence 45676655 44455556778899999966666653
No 336
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=21.52 E-value=34 Score=27.64 Aligned_cols=30 Identities=20% Similarity=0.431 Sum_probs=21.1
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhh
Q 004879 66 IHSFSKELDSLKTENLSLKNDIKVLKAELN 95 (725)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (725)
+..|..+...|+.||..|+..++.|+.++.
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667777788888888888888877653
No 337
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}
Probab=21.51 E-value=66 Score=32.53 Aligned_cols=34 Identities=12% Similarity=0.154 Sum_probs=21.7
Q ss_pred CCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCC--CeEEEEee
Q 004879 331 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKG--HLVEIVLP 374 (725)
Q Consensus 331 ~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~G--HeV~VItP 374 (725)
+.|+|++... .|++| ..+++.|.+.| |+|.++..
T Consensus 2 ~~m~vlVTGa-------tG~iG---~~l~~~L~~~g~~~~V~~~~r 37 (336)
T 2hun_A 2 HSMKLLVTGG-------MGFIG---SNFIRYILEKHPDWEVINIDK 37 (336)
T ss_dssp -CCEEEEETT-------TSHHH---HHHHHHHHHHCTTCEEEEEEC
T ss_pred CCCeEEEECC-------CchHH---HHHHHHHHHhCCCCEEEEEec
Confidence 3578765532 35555 55677888886 88877753
No 338
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=21.49 E-value=1.5e+02 Score=27.39 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=30.6
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
.+|+++... ..|....++..+++.+...|++|.++-..
T Consensus 5 ~kv~IvY~S-----~~GnT~~iA~~ia~~l~~~g~~v~~~~~~ 42 (159)
T 3fni_A 5 TSIGVFYVS-----EYGYSDRLAQAIINGITKTGVGVDVVDLG 42 (159)
T ss_dssp CEEEEEECT-----TSTTHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CEEEEEEEC-----CChHHHHHHHHHHHHHHHCCCeEEEEECc
Confidence 477777543 26999999999999999999999888543
No 339
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=21.45 E-value=59 Score=33.77 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=24.0
Q ss_pred CCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Q 004879 332 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 332 ~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP 374 (725)
.|||++|. .|.+|. .++..|++.||+|+++..
T Consensus 3 ~mkI~IiG--------aG~~G~---~~a~~L~~~g~~V~~~~r 34 (335)
T 3ghy_A 3 LTRICIVG--------AGAVGG---YLGARLALAGEAINVLAR 34 (335)
T ss_dssp CCCEEEES--------CCHHHH---HHHHHHHHTTCCEEEECC
T ss_pred CCEEEEEC--------cCHHHH---HHHHHHHHCCCEEEEEEC
Confidence 58999884 355554 467788889999999864
No 340
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=21.44 E-value=5.7e+02 Score=24.84 Aligned_cols=103 Identities=12% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHH-HHH
Q 004879 150 ENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEI-HSY 228 (725)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 228 (725)
+.|+.||..=....+.-+.-+.+.++.+..++.+...+++.---+-.-+.++.-..-+=..++.|+.++.+-..+. +.+
T Consensus 41 ~eL~~LL~~~~dlL~~~v~~l~~~q~~~~~~e~l~s~ae~ll~l~~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~~~l 120 (192)
T 2p22_C 41 KEIIDLIQTHRHQLELYVTKFNPLTDFAGKIHAFRDQFKQLEENFEDLHEQKDKVQALLENARILESKYVASWQDYHSEF 120 (192)
T ss_dssp HHHHHHHHHCHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH--HHHHHHHhhhhHHhhhh
Q 004879 229 VQLYQES--VKEFQDTLHSLKEESKK 252 (725)
Q Consensus 229 ~~~~~~~--~~~~~~~~~~~~~~~~~ 252 (725)
...|-.. ...||......+++++.
T Consensus 121 s~~~sp~~L~~~L~~a~~e~eeeS~~ 146 (192)
T 2p22_C 121 SKKYGDIALKKKLEQNTKKLDEESSQ 146 (192)
T ss_dssp HHTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHH
No 341
>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}
Probab=21.43 E-value=46 Score=33.68 Aligned_cols=34 Identities=21% Similarity=0.375 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHC-----C-CeEEEEee
Q 004879 330 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKK-----G-HLVEIVLP 374 (725)
Q Consensus 330 ~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~-----G-HeV~VItP 374 (725)
..+|||.+|. .|.+|. .++..|.+. | |+|+++..
T Consensus 6 ~~~m~I~iiG--------~G~mG~---~~a~~L~~~~~~~~g~~~V~~~~r 45 (317)
T 2qyt_A 6 QQPIKIAVFG--------LGGVGG---YYGAMLALRAAATDGLLEVSWIAR 45 (317)
T ss_dssp -CCEEEEEEC--------CSHHHH---HHHHHHHHHHHHTTSSEEEEEECC
T ss_pred CCCCEEEEEC--------cCHHHH---HHHHHHHhCccccCCCCCEEEEEc
Confidence 3458999884 366664 456677777 9 99998853
No 342
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A
Probab=21.26 E-value=82 Score=32.21 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=29.5
Q ss_pred CCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 004879 332 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDC 378 (725)
Q Consensus 332 ~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~ 378 (725)
.||||+....- =.+.-+..|.++|++.| +|.|+.|....
T Consensus 1 ~M~ILlTNDDG-------i~apGi~aL~~~L~~~g-~V~VVAP~~~~ 39 (254)
T 2v4n_A 1 SMRILLSNDDG-------VHAPGIQTLAKALREFA-DVQVVAPDRNR 39 (254)
T ss_dssp CCEEEEECSSC-------TTCHHHHHHHHHHTTTS-EEEEEEESSCC
T ss_pred CCeEEEEcCCC-------CCCHHHHHHHHHHHhCC-cEEEEeeCCCC
Confidence 38999888753 22456778888888876 99999998654
No 343
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=21.20 E-value=1.8e+02 Score=24.29 Aligned_cols=50 Identities=24% Similarity=0.296 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHhHh--hhhhHHHhHH--HHHhHHHHHHHHHHHHHHHhhhch
Q 004879 173 NQELRKKVDKLEESLD--EANIYKLSSE--KMQQYNELMQQKMKLLEERLQRSD 222 (725)
Q Consensus 173 ~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 222 (725)
..++...++.||..|. +..|.+|+.. .||+-.+.++.++..|.+|++...
T Consensus 9 ~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 9 DQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666666665543 3444444432 455556666666666666665433
No 344
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=21.19 E-value=99 Score=31.79 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=24.4
Q ss_pred CCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHH--CCCeEEEEee
Q 004879 330 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQK--KGHLVEIVLP 374 (725)
Q Consensus 330 ~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~--~GHeV~VItP 374 (725)
..+|+|++. ||.|-.-..|+++|.+ .||+|.++..
T Consensus 8 ~~~~~vlVT----------GatG~IG~~l~~~L~~~~~g~~V~~~~r 44 (362)
T 3sxp_A 8 LENQTILIT----------GGAGFVGSNLAFHFQENHPKAKVVVLDK 44 (362)
T ss_dssp CTTCEEEEE----------TTTSHHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred cCCCEEEEE----------CCCCHHHHHHHHHHHhhCCCCeEEEEEC
Confidence 445677655 4444444567888888 8999999864
No 345
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=21.11 E-value=4.6e+02 Score=29.90 Aligned_cols=36 Identities=28% Similarity=0.290 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHhHh
Q 004879 150 ENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLD 188 (725)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (725)
+-||..|.. +...+-.+||-++.|-.+-..+++.=.
T Consensus 459 ~vl~~fl~~---~~~~~~~ilq~d~~l~~~~k~~~~~~~ 494 (592)
T 1f5n_A 459 EILQTYLKS---KESMTDAILQTDQTLTEKEKEIEVERV 494 (592)
T ss_dssp HHHHHHHHH---THHHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555543 444444566666666555544444433
No 346
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=21.10 E-value=40 Score=26.85 Aligned_cols=32 Identities=19% Similarity=0.426 Sum_probs=21.1
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhh
Q 004879 66 IHSFSKELDSLKTENLSLKNDIKVLKAELNSV 97 (725)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (725)
+-.|..+...|..||..|+..+..|+.++...
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556666777777777777777777666544
No 347
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=21.09 E-value=71 Score=32.04 Aligned_cols=25 Identities=16% Similarity=0.061 Sum_probs=18.2
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEe
Q 004879 349 GGLGDVVAGLGKALQKKGHLVEIVL 373 (725)
Q Consensus 349 GGlg~vV~~LaraL~~~GHeV~VIt 373 (725)
||.|..-..++++|.+.||+|.++.
T Consensus 9 GatG~iG~~l~~~L~~~g~~V~~~~ 33 (315)
T 2ydy_A 9 GATGLLGRAVHKEFQQNNWHAVGCG 33 (315)
T ss_dssp TTTSHHHHHHHHHHHTTTCEEEEEC
T ss_pred CCCcHHHHHHHHHHHhCCCeEEEEc
Confidence 3444444567888999999999886
No 348
>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1
Probab=20.94 E-value=36 Score=35.96 Aligned_cols=24 Identities=21% Similarity=0.086 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 352 GDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 352 g~vV~~LaraL~~~GHeV~VItP~ 375 (725)
|.+-+.+++++..+|++|++|...
T Consensus 65 GkmG~aiAe~~~~~Ga~V~lv~g~ 88 (313)
T 1p9o_A 65 GRRGATSAEAFLAAGYGVLFLYRA 88 (313)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEET
T ss_pred cHHHHHHHHHHHHCCCEEEEEecC
Confidence 566677899999999999999754
No 349
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=20.76 E-value=35 Score=33.83 Aligned_cols=27 Identities=19% Similarity=0.097 Sum_probs=19.6
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 349 GGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 349 GGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
||.|..-..++++|.++||+|.++...
T Consensus 12 GatG~iG~~l~~~L~~~g~~V~~~~r~ 38 (287)
T 3sc6_A 12 GANGQLGKQLQEELNPEEYDIYPFDKK 38 (287)
T ss_dssp STTSHHHHHHHHHSCTTTEEEEEECTT
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 444445556788888999999988653
No 350
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=20.71 E-value=28 Score=27.22 Aligned_cols=19 Identities=26% Similarity=0.357 Sum_probs=14.4
Q ss_pred hHHHHHHcCCCccccCCCCCceee
Q 004879 697 NLYIKLGQGGDLTVNNNCEPWLHH 720 (725)
Q Consensus 697 GLv~LEAMg~~~~V~~~~~G~l~~ 720 (725)
.+.+|+|||.. +++|||.+
T Consensus 13 al~qMl~MGF~-----negGWLt~ 31 (52)
T 1q02_A 13 SLSQMLSMGFS-----DEGGWLTR 31 (52)
T ss_dssp HHHHHHTTTCC-----CTTSHHHH
T ss_pred HHHHHHHcCCC-----ccccHHHH
Confidence 45777888865 89999865
No 351
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=20.69 E-value=6.4e+02 Score=25.15 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=39.3
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcc--hhhhhccccchhhhhhHHH
Q 004879 70 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSIS--QEDVAKLSTLKVECKDLYE 147 (725)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 147 (725)
...++.|...-..|..-...-+..|...- .+..+.++...+..-|.+-|..+... -.|+..+..+.-.|+++-.
T Consensus 82 ~~~l~~l~~~w~~L~~~~~~R~~~Le~~l----~l~~f~~~~~~l~~Wl~~~e~~l~~~~~g~d~~~v~~l~~~~~~f~~ 157 (326)
T 3kbt_A 82 IRLQGQVDKHYAGLKDVAEERKRKLENMY----HLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFAR 157 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHccccCCCCHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444322 34556677777777777777655421 1244444444445555544
Q ss_pred HHHH
Q 004879 148 KVEN 151 (725)
Q Consensus 148 ~~~~ 151 (725)
.+.+
T Consensus 158 el~~ 161 (326)
T 3kbt_A 158 ETGA 161 (326)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 352
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*
Probab=20.67 E-value=74 Score=30.97 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=23.3
Q ss_pred CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
||++.|+- ..||+|. .+++.|.+.|+.|.++...
T Consensus 1 mk~vlVTG------as~gIG~---~~a~~l~~~G~~V~~~~r~ 34 (257)
T 1fjh_A 1 MSIIVISG------CATGIGA---ATRKVLEAAGHQIVGIDIR 34 (257)
T ss_dssp CCEEEEET------TTSHHHH---HHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEeC------CCCHHHH---HHHHHHHHCCCEEEEEeCC
Confidence 56666643 2466665 5788889999998887543
No 353
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=20.67 E-value=5.2e+02 Score=24.06 Aligned_cols=85 Identities=21% Similarity=0.354 Sum_probs=52.6
Q ss_pred HHhhhhhhHHHHhh-hhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 004879 158 KATKQADQAISVLQ-QNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESV 236 (725)
Q Consensus 158 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (725)
+++..++.+.-+|. +...-..+++.|+..|+++.-- .-++-++|-+. ..|++.+|.+|.++.+.....=.++..+=
T Consensus 31 k~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~--aeeadrKyeE~-~RKl~~~E~dLeraeeRae~aE~k~~eLE 107 (147)
T 2b9c_A 31 KAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHI--AEDADRKYEEV-ARKLVIIESDLERAEERAELSEGKCAELE 107 (147)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH--HHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666664 3344456899999999988643 34555666554 45788888888887777666555555444
Q ss_pred HHHHHHhhh
Q 004879 237 KEFQDTLHS 245 (725)
Q Consensus 237 ~~~~~~~~~ 245 (725)
.+....-++
T Consensus 108 eeL~~~~~n 116 (147)
T 2b9c_A 108 EELKTVTNN 116 (147)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 443333333
No 354
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Probab=20.65 E-value=90 Score=32.55 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=19.1
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 349 GGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 349 GGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
||.|..-..|++.|.+.||+|.++...
T Consensus 36 GatG~iG~~l~~~L~~~g~~V~~~~r~ 62 (379)
T 2c5a_A 36 GAGGFIASHIARRLKHEGHYVIASDWK 62 (379)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCccHHHHHHHHHHHHCCCeEEEEECC
Confidence 444444456778888899999988643
No 355
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=20.63 E-value=5.3e+02 Score=27.61 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=37.2
Q ss_pred hhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHH
Q 004879 69 FSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKE 120 (725)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (725)
.+.+.+.|-++=...+++|+.-++.+..+.+|. .+.|.++..-+.--++
T Consensus 138 ~~~~~~~~~~~~~~~~~e~~~k~~a~~af~~~~---~~f~~q~~~~e~~~~~ 186 (373)
T 3hhm_B 138 KSREYDRLYEEYTRTSQEIQMKRTAIEAFNETI---KIFEEQCQTQERYSKE 186 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHhccchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhh
Confidence 577888888888888999998888888777664 4677777766665444
No 356
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=20.62 E-value=85 Score=31.75 Aligned_cols=33 Identities=18% Similarity=0.118 Sum_probs=23.2
Q ss_pred CCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Q 004879 332 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 332 ~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP 374 (725)
.|+|++... .||+| ..+++.|.+.||+|.++..
T Consensus 5 ~~~vlVTGa-------tG~iG---~~l~~~L~~~G~~V~~~~r 37 (341)
T 3enk_A 5 KGTILVTGG-------AGYIG---SHTAVELLAHGYDVVIADN 37 (341)
T ss_dssp SCEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEECC
T ss_pred CcEEEEecC-------CcHHH---HHHHHHHHHCCCcEEEEec
Confidence 456665532 45665 5678899999999988853
No 357
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=20.59 E-value=7.7e+02 Score=26.39 Aligned_cols=24 Identities=4% Similarity=0.421 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhHhhhhhHHHhHH
Q 004879 175 ELRKKVDKLEESLDEANIYKLSSE 198 (725)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~ 198 (725)
.++.+...|++.+...++|.-...
T Consensus 29 ~~~~r~~el~~~~~~p~~w~d~~~ 52 (365)
T 1gqe_A 29 AKKERLEEVNAELEQPDVWNEPER 52 (365)
T ss_dssp HHHHHHHHHHHHHHSGGGGGSHHH
T ss_pred HHHHHHHHHHHHhcCCccccCHHH
Confidence 466677777777777777765443
No 358
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=20.48 E-value=5.1e+02 Score=23.93 Aligned_cols=44 Identities=20% Similarity=0.345 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHH
Q 004879 173 NQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEE 216 (725)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (725)
.++..++++++++.+..+.+-.-|.++++.++.|++.=-+.+.+
T Consensus 68 ~~e~~~el~~l~~~l~~np~V~~y~~Ae~~l~~LL~~I~~iI~~ 111 (151)
T 2pih_A 68 LKQVEAKIDALQEELEEIPVIQEFRDSQMEVNDLLQLVAHTISN 111 (151)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888899999999998888999988888888765555555
No 359
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=20.41 E-value=1.8e+02 Score=28.59 Aligned_cols=114 Identities=17% Similarity=0.168 Sum_probs=62.9
Q ss_pred CCCCCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCC--CeEEEEeeCCCCCcccccccccccceeeeeccCCccee
Q 004879 327 SSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKG--HLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFK 404 (725)
Q Consensus 327 ~~~~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~G--HeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~ 404 (725)
|..+.++||+++.+ |-|.....|..++...+ ++|..+....+... .+.
T Consensus 2 ~~~m~~~ri~vl~S---------G~gsnl~all~~~~~~~l~~~I~~Visn~~~a~-----~l~---------------- 51 (209)
T 4ds3_A 2 PGSMKRNRVVIFIS---------GGGSNMEALIRAAQAPGFPAEIVAVFSDKAEAG-----GLA---------------- 51 (209)
T ss_dssp ----CCEEEEEEES---------SCCHHHHHHHHHHTSTTCSEEEEEEEESCTTCT-----HHH----------------
T ss_pred CCcCCCccEEEEEE---------CCcHHHHHHHHHHHcCCCCcEEEEEEECCcccH-----HHH----------------
Confidence 34456678888754 44677888888876543 56666655422211 000
Q ss_pred eeeEeeeeCCeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHHHhhc
Q 004879 405 NKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYV 484 (725)
Q Consensus 405 ~rV~~~~v~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~~~ya 484 (725)
.....||+++.+++. .|.. | .-|...+.+.++. .+||+|-+-.|..-+ ++-++..+.
T Consensus 52 ----~A~~~gIp~~~~~~~----------~~~~-----r-~~~d~~~~~~l~~--~~~Dliv~agy~~il-~~~~l~~~~ 108 (209)
T 4ds3_A 52 ----KAEAAGIATQVFKRK----------DFAS-----K-EAHEDAILAALDV--LKPDIICLAGYMRLL-SGRFIAPYE 108 (209)
T ss_dssp ----HHHHTTCCEEECCGG----------GSSS-----H-HHHHHHHHHHHHH--HCCSEEEESSCCSCC-CHHHHGGGT
T ss_pred ----HHHHcCCCEEEeCcc----------ccCC-----H-HHHHHHHHHHHHh--cCCCEEEEeccccCc-CHHHHhhcc
Confidence 012358888866531 1110 1 1244555666664 489999999886544 455655432
Q ss_pred cCCCCCCcEEEEeeCC
Q 004879 485 PKGLNSARVCFTCHNF 500 (725)
Q Consensus 485 ~~gl~~ipiV~TiHn~ 500 (725)
.-++.+|..
T Consensus 109 -------~~~iNiHpS 117 (209)
T 4ds3_A 109 -------GRILNIHPS 117 (209)
T ss_dssp -------TCEEEEESS
T ss_pred -------CCeEEECCc
Confidence 137888864
No 360
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=20.40 E-value=1.4e+02 Score=30.03 Aligned_cols=50 Identities=20% Similarity=0.120 Sum_probs=32.8
Q ss_pred HHHHhhhccCCCCCCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Q 004879 317 AISTFLKLTSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 317 ~~~~~~~~~~~~~~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP 374 (725)
+-+.+++|+. +.|+.++|+..- .--|-..+...|+++|+++|..|..+=|
T Consensus 14 ~~~~~~~~~~----~~m~~i~Itgt~----t~vGKT~vt~gL~~~l~~~G~~V~~fKP 63 (251)
T 3fgn_A 14 LQGTENLYFQ----SHMTILVVTGTG----TGVGKTVVCAALASAARQAGIDVAVCKP 63 (251)
T ss_dssp --------CC----SSCEEEEEEESS----TTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred hhHHHHHhcc----cCCCEEEEEeCC----CCCcHHHHHHHHHHHHHHCCCeEEEEee
Confidence 4455666664 358888888642 2347778889999999999999988855
No 361
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=20.29 E-value=71 Score=33.97 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=25.6
Q ss_pred CCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Q 004879 331 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 331 ~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP 374 (725)
+.|+|.+| |+|.+-..+++.|.+.||+|.++-+
T Consensus 21 ~~mkIgiI-----------GlG~mG~~~A~~L~~~G~~V~v~dr 53 (358)
T 4e21_A 21 QSMQIGMI-----------GLGRMGADMVRRLRKGGHECVVYDL 53 (358)
T ss_dssp -CCEEEEE-----------CCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred cCCEEEEE-----------CchHHHHHHHHHHHhCCCEEEEEeC
Confidence 35788888 4466677889999999999988743
No 362
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=20.20 E-value=74 Score=32.43 Aligned_cols=32 Identities=19% Similarity=0.144 Sum_probs=24.6
Q ss_pred CCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Q 004879 332 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 374 (725)
Q Consensus 332 ~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP 374 (725)
.|||.+|. +|.+-..+++.|.+.||+|.++-+
T Consensus 7 ~~~I~iIG-----------~G~mG~~~a~~l~~~G~~V~~~dr 38 (303)
T 3g0o_A 7 DFHVGIVG-----------LGSMGMGAARSCLRAGLSTWGADL 38 (303)
T ss_dssp CCEEEEEC-----------CSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCeEEEEC-----------CCHHHHHHHHHHHHCCCeEEEEEC
Confidence 47888883 355556788999999999988743
No 363
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*
Probab=20.07 E-value=70 Score=33.18 Aligned_cols=27 Identities=26% Similarity=0.160 Sum_probs=19.3
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 004879 349 GGLGDVVAGLGKALQKKGHLVEIVLPK 375 (725)
Q Consensus 349 GGlg~vV~~LaraL~~~GHeV~VItP~ 375 (725)
||.|.+-..+++.|.+.||+|.++...
T Consensus 35 GatG~IG~~l~~~L~~~g~~V~~~~r~ 61 (381)
T 1n7h_A 35 GITGQDGSYLTEFLLGKGYEVHGLIRR 61 (381)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cCCchHHHHHHHHHHHCCCEEEEEecC
Confidence 444444466788889999999888643
Done!