Query 004880
Match_columns 725
No_of_seqs 535 out of 3120
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 08:40:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004880.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004880hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 100.0 3.3E-86 1.1E-90 788.0 35.6 520 148-690 229-766 (800)
2 1z3i_X Similar to RAD54-like; 100.0 1.8E-80 6.2E-85 721.2 35.6 496 151-660 51-572 (644)
3 1z63_A Helicase of the SNF2/RA 100.0 2.6E-74 8.8E-79 653.7 34.9 463 149-659 31-496 (500)
4 3dmq_A RNA polymerase-associat 100.0 2.9E-52 1E-56 503.1 30.4 441 153-628 151-635 (968)
5 1wp9_A ATP-dependent RNA helic 100.0 1.1E-46 3.7E-51 423.2 32.0 438 153-626 7-493 (494)
6 1z5z_A Helicase of the SNF2/RA 100.0 7.5E-45 2.6E-49 376.3 20.8 255 383-660 13-268 (271)
7 2fwr_A DNA repair protein RAD2 100.0 1.5E-42 5.2E-47 390.0 23.1 372 152-625 90-471 (472)
8 4a2p_A RIG-I, retinoic acid in 100.0 1.1E-39 3.6E-44 374.0 25.6 445 153-630 5-529 (556)
9 4a2q_A RIG-I, retinoic acid in 100.0 5.9E-39 2E-43 382.5 32.0 422 151-630 244-770 (797)
10 4a2w_A RIG-I, retinoic acid in 100.0 1.8E-39 6.1E-44 391.3 27.5 416 152-630 245-770 (936)
11 3tbk_A RIG-I helicase domain; 100.0 8.7E-39 3E-43 366.1 30.0 419 154-630 3-528 (555)
12 3hgt_A HDA1 complex subunit 3; 100.0 1.9E-37 6.4E-42 320.1 21.2 217 395-619 20-248 (328)
13 2oca_A DAR protein, ATP-depend 100.0 6.1E-36 2.1E-40 339.5 25.9 346 153-613 111-463 (510)
14 2ykg_A Probable ATP-dependent 100.0 2.1E-35 7.3E-40 347.8 30.6 426 150-613 8-521 (696)
15 4gl2_A Interferon-induced heli 100.0 2E-36 6.8E-41 356.8 20.0 436 153-630 5-541 (699)
16 3h1t_A Type I site-specific re 100.0 5.8E-35 2E-39 337.3 23.3 354 152-606 175-559 (590)
17 1xti_A Probable ATP-dependent 100.0 8.3E-33 2.9E-37 302.4 28.0 329 154-619 29-367 (391)
18 1hv8_A Putative ATP-dependent 100.0 1.1E-32 3.8E-37 298.2 24.4 312 154-609 27-346 (367)
19 1s2m_A Putative ATP-dependent 100.0 8.8E-32 3E-36 295.4 30.5 316 154-608 42-365 (400)
20 2j0s_A ATP-dependent RNA helic 100.0 2E-31 6.8E-36 293.6 30.6 319 154-609 58-384 (410)
21 2z0m_A 337AA long hypothetical 100.0 4.3E-32 1.5E-36 290.2 21.9 314 153-618 14-334 (337)
22 2db3_A ATP-dependent RNA helic 100.0 2.8E-30 9.7E-35 286.6 29.3 316 153-607 76-406 (434)
23 3eiq_A Eukaryotic initiation f 100.0 7.2E-31 2.4E-35 289.3 23.6 320 153-608 60-387 (414)
24 3pey_A ATP-dependent RNA helic 100.0 2.9E-30 9.9E-35 282.2 27.8 316 153-607 25-355 (395)
25 1fuu_A Yeast initiation factor 100.0 4.6E-32 1.6E-36 296.7 11.9 318 153-608 41-366 (394)
26 2i4i_A ATP-dependent RNA helic 100.0 1.5E-29 5.1E-34 279.1 29.2 319 153-608 35-383 (417)
27 3fht_A ATP-dependent RNA helic 100.0 9.6E-29 3.3E-33 272.0 33.2 329 153-620 45-390 (412)
28 1oyw_A RECQ helicase, ATP-depe 100.0 3.3E-29 1.1E-33 283.8 25.0 308 151-602 21-339 (523)
29 3oiy_A Reverse gyrase helicase 100.0 1E-28 3.5E-33 272.5 28.3 317 153-623 19-376 (414)
30 2v1x_A ATP-dependent DNA helic 100.0 1.7E-28 5.7E-33 280.9 27.8 314 152-602 41-370 (591)
31 3sqw_A ATP-dependent RNA helic 100.0 6E-28 2.1E-32 277.8 27.6 337 153-619 41-407 (579)
32 3i5x_A ATP-dependent RNA helic 100.0 1.7E-27 5.7E-32 273.5 26.9 337 153-619 92-458 (563)
33 3fho_A ATP-dependent RNA helic 99.9 8.6E-29 3E-33 280.0 9.1 313 155-602 141-466 (508)
34 2eyq_A TRCF, transcription-rep 99.9 1.6E-27 5.6E-32 291.2 20.1 310 152-608 600-922 (1151)
35 2xgj_A ATP-dependent RNA helic 99.9 2.4E-26 8.1E-31 277.0 29.7 361 153-609 84-500 (1010)
36 3fmp_B ATP-dependent RNA helic 99.9 5.5E-28 1.9E-32 271.9 12.7 312 153-600 112-440 (479)
37 1gm5_A RECG; helicase, replica 99.9 2.6E-27 9E-32 276.8 11.4 311 154-609 367-698 (780)
38 3l9o_A ATP-dependent RNA helic 99.9 1.2E-25 4.2E-30 273.1 24.9 355 153-612 182-601 (1108)
39 2p6r_A Afuhel308 helicase; pro 99.9 5.9E-25 2E-29 258.5 24.8 323 154-612 24-392 (702)
40 2va8_A SSO2462, SKI2-type heli 99.9 2.3E-24 7.7E-29 254.2 28.0 327 154-609 29-409 (715)
41 2zj8_A DNA helicase, putative 99.9 9.7E-25 3.3E-29 257.4 23.9 322 154-612 22-391 (720)
42 4a4z_A Antiviral helicase SKI2 99.9 4E-24 1.4E-28 257.6 27.5 386 152-618 36-502 (997)
43 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 6.7E-23 2.3E-27 245.6 27.0 156 155-321 271-441 (1038)
44 4ddu_A Reverse gyrase; topoiso 99.9 1.2E-22 4E-27 246.9 28.7 318 153-625 76-505 (1104)
45 1gku_B Reverse gyrase, TOP-RG; 99.9 1E-21 3.5E-26 238.7 19.7 317 153-624 55-468 (1054)
46 2v6i_A RNA helicase; membrane, 99.8 2E-20 6.9E-25 206.8 18.4 100 495-602 170-287 (431)
47 2jlq_A Serine protease subunit 99.8 1.7E-20 5.8E-25 208.7 15.0 95 495-597 187-301 (451)
48 2z83_A Helicase/nucleoside tri 99.8 1.5E-20 5.3E-25 209.4 12.5 105 495-608 189-313 (459)
49 1tf5_A Preprotein translocase 99.8 1.1E-19 3.9E-24 208.6 19.3 115 479-598 415-537 (844)
50 1yks_A Genome polyprotein [con 99.8 4.8E-20 1.6E-24 204.2 15.2 102 495-605 176-296 (440)
51 2wv9_A Flavivirin protease NS2 99.8 1.4E-20 4.8E-25 217.4 11.1 123 494-625 408-551 (673)
52 2whx_A Serine protease/ntpase/ 99.8 3.1E-19 1.1E-23 204.9 18.1 286 169-622 181-493 (618)
53 1rif_A DAR protein, DNA helica 99.8 5.2E-20 1.8E-24 192.0 9.7 164 153-335 111-278 (282)
54 2fsf_A Preprotein translocase 99.8 3E-18 1E-22 196.3 24.9 116 478-598 423-575 (853)
55 1t5i_A C_terminal domain of A 99.8 4.1E-19 1.4E-23 170.9 13.8 123 478-607 15-137 (172)
56 4f92_B U5 small nuclear ribonu 99.8 7.7E-18 2.6E-22 211.8 27.6 320 155-608 926-1308(1724)
57 2hjv_A ATP-dependent RNA helic 99.8 9E-19 3.1E-23 167.0 14.8 133 478-619 19-151 (163)
58 3rc3_A ATP-dependent RNA helic 99.8 8.5E-19 2.9E-23 202.0 16.0 108 498-607 322-444 (677)
59 2jgn_A DBX, DDX3, ATP-dependen 99.8 3.5E-19 1.2E-23 173.4 10.7 125 478-608 29-153 (185)
60 1nkt_A Preprotein translocase 99.8 8.3E-18 2.8E-22 192.9 23.4 115 479-598 443-609 (922)
61 2xau_A PRE-mRNA-splicing facto 99.8 1.8E-18 6E-23 203.6 17.7 112 495-610 302-445 (773)
62 1c4o_A DNA nucleotide excision 99.8 3.1E-17 1.1E-21 190.1 25.8 121 483-609 426-551 (664)
63 1fuk_A Eukaryotic initiation f 99.8 2.6E-18 9E-23 164.0 13.2 124 480-610 16-139 (165)
64 2fz4_A DNA repair protein RAD2 99.8 3.8E-18 1.3E-22 172.9 14.9 143 150-322 88-232 (237)
65 2p6n_A ATP-dependent RNA helic 99.8 2.7E-18 9.1E-23 168.0 12.7 123 478-608 39-161 (191)
66 4f92_B U5 small nuclear ribonu 99.8 2.1E-17 7.2E-22 207.9 23.7 323 154-609 78-474 (1724)
67 3o8b_A HCV NS3 protease/helica 99.8 2.8E-19 9.6E-24 203.7 5.9 275 155-611 217-517 (666)
68 2rb4_A ATP-dependent RNA helic 99.7 1.6E-17 5.4E-22 160.3 14.0 123 480-609 20-148 (175)
69 3eaq_A Heat resistant RNA depe 99.7 4.5E-17 1.5E-21 162.1 14.3 123 479-608 16-138 (212)
70 2d7d_A Uvrabc system protein B 99.7 1.6E-15 5.4E-20 175.7 29.0 120 484-609 433-557 (661)
71 2yjt_D ATP-dependent RNA helic 99.6 5.7E-19 2E-23 169.6 0.0 118 479-601 15-132 (170)
72 2gxq_A Heat resistant RNA depe 99.7 1.6E-16 5.3E-21 157.3 15.2 157 153-319 21-186 (207)
73 3jux_A Protein translocase sub 99.7 1.8E-15 6E-20 170.1 24.5 116 478-598 456-579 (822)
74 3b6e_A Interferon-induced heli 99.7 3.4E-17 1.1E-21 163.0 9.1 159 149-317 27-216 (216)
75 1t6n_A Probable ATP-dependent 99.7 2.8E-16 9.7E-21 157.2 14.9 159 154-321 35-203 (220)
76 2oxc_A Probable ATP-dependent 99.7 4.6E-16 1.6E-20 156.9 14.7 154 154-318 45-208 (230)
77 2pl3_A Probable ATP-dependent 99.7 6.4E-16 2.2E-20 156.4 15.5 156 153-319 45-213 (236)
78 3i32_A Heat resistant RNA depe 99.7 6.7E-16 2.3E-20 161.2 15.1 124 479-609 13-136 (300)
79 1q0u_A Bstdead; DEAD protein, 99.6 4.8E-16 1.6E-20 155.5 12.2 162 153-325 24-197 (219)
80 1vec_A ATP-dependent RNA helic 99.6 1.2E-15 4.1E-20 150.8 14.4 155 154-318 24-187 (206)
81 3ber_A Probable ATP-dependent 99.6 1.6E-15 5.4E-20 154.9 15.0 157 153-319 63-228 (249)
82 1qde_A EIF4A, translation init 99.6 1E-15 3.5E-20 153.5 13.1 155 154-319 35-197 (224)
83 1wrb_A DJVLGB; RNA helicase, D 99.6 4.5E-15 1.6E-19 151.8 14.2 155 154-318 44-219 (253)
84 3bor_A Human initiation factor 99.6 4.2E-15 1.4E-19 150.6 12.6 157 154-319 51-215 (237)
85 3iuy_A Probable ATP-dependent 99.6 2.4E-14 8.2E-19 143.9 13.9 155 154-318 41-208 (228)
86 3dkp_A Probable ATP-dependent 99.5 1E-13 3.5E-18 141.0 15.8 156 154-318 50-220 (245)
87 3ly5_A ATP-dependent RNA helic 99.5 6.6E-14 2.3E-18 144.0 13.7 156 154-319 75-243 (262)
88 3fe2_A Probable ATP-dependent 99.5 1.6E-13 5.3E-18 139.4 15.7 155 154-318 50-217 (242)
89 2vl7_A XPD; helicase, unknown 99.4 1E-11 3.6E-16 140.8 21.7 134 153-293 5-188 (540)
90 2ipc_A Preprotein translocase 99.4 3E-11 1E-15 138.5 24.3 142 152-322 76-232 (997)
91 3fmo_B ATP-dependent RNA helic 99.4 2.1E-12 7.1E-17 135.4 12.5 155 153-318 112-277 (300)
92 3llm_A ATP-dependent RNA helic 98.9 3.7E-09 1.3E-13 106.4 10.0 149 154-319 60-219 (235)
93 3crv_A XPD/RAD3 related DNA he 98.8 1.2E-08 4E-13 116.0 10.7 136 154-294 2-187 (551)
94 4a15_A XPD helicase, ATP-depen 98.1 4.6E-06 1.6E-10 95.7 9.4 81 155-237 3-87 (620)
95 4b3f_X DNA-binding protein smu 97.4 0.00023 7.7E-09 82.3 9.0 71 152-227 186-257 (646)
96 2gk6_A Regulator of nonsense t 97.3 0.00075 2.6E-08 77.5 11.8 154 154-321 179-376 (624)
97 3upu_A ATP-dependent DNA helic 97.3 0.0009 3.1E-08 73.9 11.5 144 153-321 23-167 (459)
98 3e1s_A Exodeoxyribonuclease V, 97.3 0.0012 4E-08 74.9 12.3 132 153-321 187-318 (574)
99 1w36_D RECD, exodeoxyribonucle 97.1 0.0017 5.9E-08 74.1 11.2 150 157-323 151-303 (608)
100 2b8t_A Thymidine kinase; deoxy 97.1 0.0036 1.2E-07 61.7 11.7 113 174-317 12-124 (223)
101 2xzl_A ATP-dependent helicase 97.0 0.0015 5.3E-08 76.8 9.9 153 154-321 359-554 (802)
102 2wjy_A Regulator of nonsense t 96.9 0.0012 4.3E-08 77.5 8.5 154 154-321 355-552 (800)
103 3lfu_A DNA helicase II; SF1 he 96.7 0.011 3.7E-07 68.1 13.3 66 155-226 9-77 (647)
104 2o0j_A Terminase, DNA packagin 96.5 0.016 5.5E-07 61.8 12.6 154 154-330 162-323 (385)
105 2orw_A Thymidine kinase; TMTK, 96.2 0.014 4.7E-07 55.7 8.8 35 177-213 6-40 (184)
106 3cpe_A Terminase, DNA packagin 96.1 0.04 1.4E-06 62.7 13.7 147 154-321 162-316 (592)
107 3syl_A Protein CBBX; photosynt 96.0 0.016 5.4E-07 59.9 8.7 38 175-212 68-107 (309)
108 2j9r_A Thymidine kinase; TK1, 95.9 0.041 1.4E-06 53.4 10.5 35 178-214 32-66 (214)
109 1xx6_A Thymidine kinase; NESG, 95.7 0.024 8.4E-07 54.2 8.0 35 177-213 11-45 (191)
110 1a5t_A Delta prime, HOLB; zinc 95.7 0.062 2.1E-06 56.3 11.8 46 156-201 3-51 (334)
111 3vkw_A Replicase large subunit 95.3 0.025 8.6E-07 61.1 7.4 108 177-321 164-272 (446)
112 2chg_A Replication factor C sm 95.3 0.11 3.9E-06 49.8 11.6 26 176-201 40-65 (226)
113 1uaa_A REP helicase, protein ( 95.3 0.063 2.2E-06 62.0 11.2 77 155-237 2-86 (673)
114 2orv_A Thymidine kinase; TP4A 94.8 0.16 5.6E-06 49.7 10.9 35 178-214 23-57 (234)
115 1l8q_A Chromosomal replication 94.7 0.17 5.9E-06 52.4 11.5 37 175-213 38-74 (324)
116 4a15_A XPD helicase, ATP-depen 94.4 0.094 3.2E-06 59.8 9.3 78 494-578 446-527 (620)
117 3n70_A Transport activator; si 94.1 0.12 4.3E-06 46.6 7.9 39 280-318 76-115 (145)
118 2p65_A Hypothetical protein PF 94.1 0.24 8.2E-06 46.1 10.2 27 174-200 43-69 (187)
119 1jbk_A CLPB protein; beta barr 93.8 0.72 2.4E-05 42.8 13.0 27 174-200 43-69 (195)
120 2qby_B CDC6 homolog 3, cell di 93.8 0.13 4.3E-06 54.7 8.4 44 157-200 25-71 (384)
121 2z4s_A Chromosomal replication 93.8 0.3 1E-05 53.1 11.5 39 175-213 131-169 (440)
122 1w4r_A Thymidine kinase; type 93.6 0.2 6.7E-06 47.8 8.4 35 177-213 23-57 (195)
123 1iqp_A RFCS; clamp loader, ext 93.4 0.36 1.2E-05 49.7 10.8 42 279-320 109-151 (327)
124 1njg_A DNA polymerase III subu 93.2 0.65 2.2E-05 44.9 11.9 25 176-200 47-71 (250)
125 3eie_A Vacuolar protein sortin 92.9 0.21 7.3E-06 51.8 8.2 25 174-198 51-75 (322)
126 3u61_B DNA polymerase accessor 92.9 0.39 1.3E-05 49.7 10.2 42 280-321 105-148 (324)
127 3e2i_A Thymidine kinase; Zn-bi 92.8 0.52 1.8E-05 45.6 10.0 35 178-214 32-66 (219)
128 2q6t_A DNAB replication FORK h 92.5 0.27 9.3E-06 53.6 8.7 128 162-295 188-325 (444)
129 2gno_A DNA polymerase III, gam 92.5 0.35 1.2E-05 49.8 9.1 38 160-197 2-41 (305)
130 4b4t_J 26S protease regulatory 92.3 0.33 1.1E-05 51.7 8.8 46 173-223 181-226 (405)
131 3h4m_A Proteasome-activating n 92.2 0.23 7.9E-06 50.3 7.3 26 172-197 49-74 (285)
132 2qp9_X Vacuolar protein sortin 92.2 0.24 8.3E-06 52.2 7.5 25 174-198 84-108 (355)
133 2v1u_A Cell division control p 92.0 0.39 1.3E-05 50.6 9.1 28 173-200 43-70 (387)
134 3uk6_A RUVB-like 2; hexameric 92.0 0.37 1.3E-05 50.8 8.7 53 157-212 49-105 (368)
135 1jr3_A DNA polymerase III subu 91.8 0.63 2.1E-05 48.9 10.4 24 177-200 41-64 (373)
136 1sxj_D Activator 1 41 kDa subu 91.8 0.31 1.1E-05 50.9 7.8 40 280-319 133-173 (353)
137 3bos_A Putative DNA replicatio 91.8 0.3 1E-05 47.6 7.3 41 161-201 37-79 (242)
138 1fnn_A CDC6P, cell division co 91.4 2.2 7.5E-05 44.8 14.2 26 176-201 46-71 (389)
139 1sxj_B Activator 1 37 kDa subu 91.3 0.41 1.4E-05 49.2 8.0 25 176-200 44-68 (323)
140 3ec2_A DNA replication protein 91.2 2.3 7.7E-05 39.5 12.5 42 158-199 17-63 (180)
141 1xwi_A SKD1 protein; VPS4B, AA 91.0 0.27 9.4E-06 51.0 6.3 38 174-215 45-82 (322)
142 2r6a_A DNAB helicase, replicat 90.8 0.35 1.2E-05 52.9 7.2 127 163-294 192-327 (454)
143 3co5_A Putative two-component 90.6 0.17 5.9E-06 45.6 3.8 23 172-194 25-47 (143)
144 1ofh_A ATP-dependent HSL prote 90.4 1.6 5.4E-05 44.3 11.5 25 174-198 50-74 (310)
145 2zan_A Vacuolar protein sortin 90.2 1.5 5.2E-05 47.6 11.6 41 174-218 167-207 (444)
146 2bjv_A PSP operon transcriptio 90.2 0.79 2.7E-05 45.8 8.7 45 167-213 22-66 (265)
147 4a1f_A DNAB helicase, replicat 90.1 0.26 8.8E-06 51.5 5.0 128 163-295 35-171 (338)
148 3vfd_A Spastin; ATPase, microt 89.7 2.2 7.4E-05 45.4 12.2 39 174-217 148-186 (389)
149 2qz4_A Paraplegin; AAA+, SPG7, 89.6 1.5 5E-05 43.5 10.2 36 174-214 39-74 (262)
150 1ojl_A Transcriptional regulat 89.6 1.3 4.6E-05 45.3 10.1 42 172-215 23-64 (304)
151 2chq_A Replication factor C sm 89.5 0.23 8E-06 50.9 4.3 38 163-200 25-64 (319)
152 1sxj_C Activator 1 40 kDa subu 89.0 1.2 4E-05 46.5 9.2 41 160-200 30-72 (340)
153 3t15_A Ribulose bisphosphate c 88.5 0.57 2E-05 47.8 6.3 36 175-215 37-72 (293)
154 1xp8_A RECA protein, recombina 88.3 1.5 5.2E-05 46.2 9.5 102 163-293 61-165 (366)
155 4b4t_H 26S protease regulatory 88.1 0.91 3.1E-05 49.2 7.7 43 173-220 242-284 (467)
156 3te6_A Regulatory protein SIR3 87.8 5.5 0.00019 41.0 13.2 45 157-201 25-72 (318)
157 3d8b_A Fidgetin-like protein 1 87.7 0.91 3.1E-05 47.7 7.4 36 173-213 116-151 (357)
158 2qby_A CDC6 homolog 1, cell di 87.2 1 3.5E-05 47.2 7.6 28 174-201 45-72 (386)
159 2w0m_A SSO2452; RECA, SSPF, un 87.0 3.5 0.00012 39.5 10.8 108 172-293 21-136 (235)
160 4b4t_I 26S protease regulatory 86.9 1.2 3.9E-05 47.9 7.5 45 173-222 215-259 (437)
161 3bgw_A DNAB-like replicative h 86.7 2 6.7E-05 46.7 9.5 128 162-294 185-324 (444)
162 1g5t_A COB(I)alamin adenosyltr 86.5 1.9 6.4E-05 41.0 8.0 141 174-333 28-177 (196)
163 2dr3_A UPF0273 protein PH0284; 86.4 4.2 0.00015 39.4 11.2 52 172-225 21-72 (247)
164 3dm5_A SRP54, signal recogniti 86.4 4.1 0.00014 44.0 11.6 49 177-227 103-151 (443)
165 3bh0_A DNAB-like replicative h 86.3 0.56 1.9E-05 48.5 4.7 61 162-224 56-116 (315)
166 2zts_A Putative uncharacterize 86.3 0.55 1.9E-05 46.1 4.5 53 174-227 30-82 (251)
167 3b9p_A CG5977-PA, isoform A; A 85.9 1.3 4.4E-05 44.9 7.2 25 174-198 54-78 (297)
168 3kl4_A SRP54, signal recogniti 85.7 3.4 0.00012 44.5 10.6 33 177-211 100-132 (433)
169 1sxj_E Activator 1 40 kDa subu 85.5 5 0.00017 41.5 11.8 50 280-329 134-184 (354)
170 4b4t_L 26S protease subunit RP 85.5 0.77 2.6E-05 49.6 5.3 43 173-220 214-256 (437)
171 1w5s_A Origin recognition comp 85.3 2 6.8E-05 45.6 8.7 44 157-200 27-78 (412)
172 2zr9_A Protein RECA, recombina 84.6 3 0.0001 43.6 9.3 55 163-219 48-104 (349)
173 3k1j_A LON protease, ATP-depen 84.6 3.2 0.00011 47.0 10.3 58 162-219 48-117 (604)
174 3pvs_A Replication-associated 84.4 1.4 4.9E-05 47.8 7.0 23 176-198 52-74 (447)
175 1sxj_A Activator 1 95 kDa subu 84.3 4.1 0.00014 45.0 10.8 24 175-198 78-101 (516)
176 3cf0_A Transitional endoplasmi 83.5 1.7 5.7E-05 44.5 6.7 27 172-198 47-73 (301)
177 1r6b_X CLPA protein; AAA+, N-t 83.3 4.6 0.00016 47.0 11.2 29 173-201 206-234 (758)
178 4b4t_M 26S protease regulatory 83.1 0.73 2.5E-05 49.7 3.9 42 174-220 215-256 (434)
179 1gm5_A RECG; helicase, replica 83.0 4.1 0.00014 47.5 10.4 95 479-575 400-498 (780)
180 1u94_A RECA protein, recombina 83.0 3.9 0.00013 42.8 9.4 52 163-216 50-103 (356)
181 1hqc_A RUVB; extended AAA-ATPa 82.7 11 0.00037 38.3 12.7 25 174-198 38-62 (324)
182 2qen_A Walker-type ATPase; unk 82.5 3.1 0.0001 42.9 8.4 38 157-197 17-54 (350)
183 2cvh_A DNA repair and recombin 82.3 2.8 9.7E-05 39.9 7.5 56 163-223 8-66 (220)
184 3hu3_A Transitional endoplasmi 82.2 0.89 3.1E-05 50.0 4.2 26 172-197 236-261 (489)
185 4b4t_K 26S protease regulatory 82.1 2 6.8E-05 46.3 6.8 42 173-219 205-246 (428)
186 3hjh_A Transcription-repair-co 81.8 2.8 9.7E-05 45.8 8.0 56 174-235 14-70 (483)
187 2ce7_A Cell division protein F 81.2 6.5 0.00022 42.9 10.6 34 174-212 49-82 (476)
188 1d2n_A N-ethylmaleimide-sensit 80.4 2.9 0.0001 41.7 7.1 23 175-197 65-87 (272)
189 1qvr_A CLPB protein; coiled co 80.4 4.1 0.00014 48.2 9.4 27 174-200 191-217 (854)
190 4fcw_A Chaperone protein CLPB; 79.4 2.8 9.7E-05 42.5 6.7 34 176-211 49-82 (311)
191 2kjq_A DNAA-related protein; s 78.4 4.2 0.00014 36.7 6.8 28 173-200 35-62 (149)
192 2w58_A DNAI, primosome compone 78.2 3.4 0.00012 39.0 6.5 35 175-211 55-89 (202)
193 3io5_A Recombination and repai 76.8 6 0.00021 40.6 8.0 42 177-218 31-72 (333)
194 1pjr_A PCRA; DNA repair, DNA r 76.7 2.8 9.7E-05 48.5 6.4 66 155-226 11-79 (724)
195 3pfi_A Holliday junction ATP-d 76.6 26 0.00087 35.8 13.2 23 175-197 56-78 (338)
196 3crv_A XPD/RAD3 related DNA he 76.3 13 0.00043 41.4 11.4 88 494-592 391-486 (551)
197 2z43_A DNA repair and recombin 74.2 15 0.00051 37.7 10.5 54 162-215 94-152 (324)
198 3oiy_A Reverse gyrase helicase 73.0 11 0.00037 39.9 9.5 93 479-573 47-145 (414)
199 2px0_A Flagellar biosynthesis 72.8 17 0.00058 36.8 10.4 35 176-212 107-142 (296)
200 3cmu_A Protein RECA, recombina 72.8 6.9 0.00024 50.0 8.7 93 172-293 1425-1518(2050)
201 1n0w_A DNA repair protein RAD5 72.4 22 0.00076 34.1 10.9 52 163-214 12-68 (243)
202 3hr8_A Protein RECA; alpha and 72.2 12 0.00041 39.1 9.2 40 177-218 64-103 (356)
203 1ls1_A Signal recognition part 71.1 18 0.00063 36.5 10.2 33 178-212 102-134 (295)
204 4dzz_A Plasmid partitioning pr 70.8 30 0.001 32.1 11.2 38 181-220 9-48 (206)
205 2qgz_A Helicase loader, putati 70.0 6.4 0.00022 40.2 6.5 36 174-211 152-188 (308)
206 1zu4_A FTSY; GTPase, signal re 69.4 25 0.00086 36.0 10.8 33 178-212 109-141 (320)
207 3pxi_A Negative regulator of g 69.2 7.2 0.00025 45.3 7.4 25 176-200 523-547 (758)
208 1vma_A Cell division protein F 68.3 16 0.00055 37.2 9.0 33 178-212 108-140 (306)
209 2zpa_A Uncharacterized protein 67.4 11 0.00037 42.8 8.0 55 153-214 173-227 (671)
210 1q57_A DNA primase/helicase; d 67.0 22 0.00076 38.8 10.5 60 163-223 231-290 (503)
211 2xxa_A Signal recognition part 66.1 8.6 0.00029 41.4 6.7 35 177-212 103-137 (433)
212 3u4q_A ATP-dependent helicase/ 65.7 4.7 0.00016 49.7 5.1 60 151-216 6-69 (1232)
213 2fna_A Conserved hypothetical 65.2 70 0.0024 32.3 13.5 24 175-198 31-54 (357)
214 2eyq_A TRCF, transcription-rep 64.5 24 0.00081 43.1 10.9 93 479-573 635-731 (1151)
215 3cmw_A Protein RECA, recombina 62.5 17 0.00059 45.8 9.1 102 163-293 719-823 (1706)
216 2vhj_A Ntpase P4, P4; non- hyd 62.4 15 0.00052 37.7 7.3 25 173-197 122-146 (331)
217 2ffh_A Protein (FFH); SRP54, s 62.4 35 0.0012 36.4 10.6 34 177-212 101-134 (425)
218 3cf2_A TER ATPase, transitiona 60.1 8.2 0.00028 44.9 5.4 41 174-219 511-551 (806)
219 1v5w_A DMC1, meiotic recombina 59.6 40 0.0014 34.7 10.3 53 163-215 110-167 (343)
220 3zq6_A Putative arsenical pump 59.0 21 0.0007 36.6 7.8 33 178-212 18-50 (324)
221 4ddu_A Reverse gyrase; topoiso 58.9 24 0.00081 42.8 9.4 93 479-573 104-202 (1104)
222 3cmu_A Protein RECA, recombina 58.7 23 0.00078 45.4 9.3 102 162-294 718-824 (2050)
223 3sxu_A DNA polymerase III subu 58.4 41 0.0014 30.2 8.7 80 480-578 23-106 (150)
224 2dhr_A FTSH; AAA+ protein, hex 56.6 25 0.00086 38.4 8.4 23 175-197 65-87 (499)
225 2c9o_A RUVB-like 1; hexameric 56.2 8.4 0.00029 41.7 4.5 42 175-219 64-105 (456)
226 4ehx_A Tetraacyldisaccharide 4 55.6 26 0.00088 35.8 7.8 19 183-201 47-65 (315)
227 3of5_A Dethiobiotin synthetase 55.3 9.2 0.00031 37.1 4.1 26 178-203 9-34 (228)
228 3nhm_A Response regulator; pro 55.0 56 0.0019 27.3 9.0 100 489-594 20-123 (133)
229 3qxc_A Dethiobiotin synthetase 54.8 9.6 0.00033 37.4 4.2 26 178-203 26-51 (242)
230 3cg4_A Response regulator rece 54.6 77 0.0026 26.8 10.0 74 519-592 50-126 (142)
231 2r8r_A Sensor protein; KDPD, P 54.5 11 0.00039 36.5 4.5 45 176-220 8-52 (228)
232 3u4q_B ATP-dependent helicase/ 54.4 9.7 0.00033 46.6 5.1 51 178-228 5-56 (1166)
233 3ipz_A Monothiol glutaredoxin- 54.2 46 0.0016 27.7 8.0 67 487-556 9-81 (109)
234 1u6t_A SH3 domain-binding glut 54.0 19 0.00066 31.1 5.5 45 499-543 2-53 (121)
235 3a10_A Response regulator; pho 53.6 30 0.001 28.3 6.8 90 495-591 24-115 (116)
236 2yan_A Glutaredoxin-3; oxidore 53.2 54 0.0018 26.9 8.2 65 487-554 8-78 (105)
237 3zyw_A Glutaredoxin-3; metal b 53.2 51 0.0017 27.6 8.1 67 487-556 7-79 (111)
238 3gx8_A Monothiol glutaredoxin- 52.6 64 0.0022 27.5 8.8 59 496-556 15-82 (121)
239 3fgn_A Dethiobiotin synthetase 52.1 11 0.00038 37.2 4.2 26 178-203 31-56 (251)
240 2r44_A Uncharacterized protein 51.7 9.3 0.00032 39.1 3.7 36 163-198 35-70 (331)
241 2j48_A Two-component sensor ki 51.6 17 0.0006 29.6 4.9 89 495-591 24-116 (119)
242 3cf2_A TER ATPase, transitiona 51.2 18 0.0006 42.1 6.2 40 174-218 238-277 (806)
243 1j8m_F SRP54, signal recogniti 51.0 62 0.0021 32.6 9.7 33 178-212 102-134 (297)
244 2i1q_A DNA repair and recombin 50.5 41 0.0014 34.1 8.5 54 162-215 85-153 (322)
245 3fkq_A NTRC-like two-domain pr 49.8 33 0.0011 35.8 7.7 32 178-211 148-179 (373)
246 3i42_A Response regulator rece 49.5 28 0.00095 29.1 6.0 96 495-596 26-125 (127)
247 1wp9_A ATP-dependent RNA helic 49.4 1.2E+02 0.0042 31.8 12.5 107 479-592 34-152 (494)
248 1t6n_A Probable ATP-dependent 49.2 1.2E+02 0.0041 28.3 11.1 89 479-573 62-164 (220)
249 2wem_A Glutaredoxin-related pr 48.7 84 0.0029 26.7 8.8 59 496-556 19-84 (118)
250 2j37_W Signal recognition part 48.4 66 0.0023 35.1 10.0 34 177-212 104-137 (504)
251 1byi_A Dethiobiotin synthase; 48.1 18 0.00062 34.4 5.0 33 178-212 6-38 (224)
252 2ehv_A Hypothetical protein PH 47.0 20 0.00068 34.5 5.2 48 172-221 28-76 (251)
253 2l82_A Designed protein OR32; 46.2 89 0.003 25.9 7.9 46 499-544 5-50 (162)
254 3grc_A Sensor protein, kinase; 46.1 41 0.0014 28.6 6.6 95 495-593 29-127 (140)
255 3g5j_A Putative ATP/GTP bindin 46.0 22 0.00075 30.6 4.8 51 481-532 74-126 (134)
256 3eqz_A Response regulator; str 45.0 52 0.0018 27.5 7.1 76 521-596 47-128 (135)
257 3hws_A ATP-dependent CLP prote 43.2 29 0.001 35.9 6.1 35 173-212 50-84 (363)
258 3fe2_A Probable ATP-dependent 43.2 1.5E+02 0.0051 28.1 11.0 88 479-573 77-182 (242)
259 3cmw_A Protein RECA, recombina 42.7 50 0.0017 41.7 8.7 88 177-293 1434-1522(1706)
260 1wik_A Thioredoxin-like protei 42.7 69 0.0024 26.5 7.3 57 496-554 14-76 (109)
261 1tue_A Replication protein E1; 42.6 21 0.00071 34.1 4.2 23 176-198 60-82 (212)
262 3ber_A Probable ATP-dependent 42.4 1.8E+02 0.006 27.9 11.4 88 479-573 91-192 (249)
263 3lte_A Response regulator; str 42.3 30 0.001 29.1 5.1 28 496-523 6-33 (132)
264 1lv7_A FTSH; alpha/beta domain 42.1 26 0.00088 34.2 5.1 25 174-198 45-69 (257)
265 2wci_A Glutaredoxin-4; redox-a 41.5 70 0.0024 28.0 7.3 57 497-555 35-97 (135)
266 3gk5_A Uncharacterized rhodane 41.0 17 0.00058 30.4 3.1 38 494-531 53-90 (108)
267 3kjh_A CO dehydrogenase/acetyl 40.2 14 0.00048 35.7 2.8 30 180-211 6-35 (254)
268 2wul_A Glutaredoxin related pr 40.1 1.2E+02 0.0042 25.8 8.4 64 496-560 19-89 (118)
269 2oxc_A Probable ATP-dependent 40.0 1.1E+02 0.0039 28.8 9.4 87 479-573 72-172 (230)
270 3m6a_A ATP-dependent protease 40.0 63 0.0022 35.6 8.4 25 174-198 108-132 (543)
271 2qxy_A Response regulator; reg 39.8 39 0.0013 28.8 5.5 93 495-595 27-123 (142)
272 1gku_B Reverse gyrase, TOP-RG; 38.7 64 0.0022 38.8 8.7 90 479-573 82-181 (1054)
273 2rdm_A Response regulator rece 38.3 96 0.0033 25.7 7.8 93 495-596 28-126 (132)
274 4dad_A Putative pilus assembly 38.1 1E+02 0.0034 26.3 8.0 95 497-594 46-142 (146)
275 3ly5_A ATP-dependent RNA helic 38.1 2E+02 0.0067 27.8 11.0 88 479-573 102-207 (262)
276 1ypw_A Transitional endoplasmi 37.7 35 0.0012 39.8 6.0 25 172-196 236-260 (806)
277 1xti_A Probable ATP-dependent 37.3 1.8E+02 0.0062 29.6 11.2 90 479-573 56-158 (391)
278 2pl3_A Probable ATP-dependent 37.1 1.7E+02 0.0058 27.5 10.2 87 479-573 73-177 (236)
279 2v1x_A ATP-dependent DNA helic 37.1 87 0.003 34.9 9.0 76 479-557 70-145 (591)
280 2r2a_A Uncharacterized protein 36.8 13 0.00045 35.2 1.8 36 283-318 90-132 (199)
281 3cwq_A Para family chromosome 36.5 34 0.0012 32.2 4.8 42 178-222 5-48 (209)
282 1g3q_A MIND ATPase, cell divis 36.0 32 0.0011 32.8 4.6 33 178-212 7-39 (237)
283 3kto_A Response regulator rece 35.8 35 0.0012 29.0 4.4 72 520-594 50-127 (136)
284 2gxq_A Heat resistant RNA depe 35.6 1.6E+02 0.0054 26.9 9.5 88 479-573 49-150 (207)
285 1cp2_A CP2, nitrogenase iron p 35.5 25 0.00087 34.4 3.8 29 180-210 7-35 (269)
286 3hix_A ALR3790 protein; rhodan 35.2 33 0.0011 28.4 4.0 39 493-531 49-88 (106)
287 4ag6_A VIRB4 ATPase, type IV s 35.1 55 0.0019 34.2 6.6 45 173-219 34-78 (392)
288 2rjn_A Response regulator rece 35.1 92 0.0032 26.8 7.3 29 496-524 7-35 (154)
289 3k9g_A PF-32 protein; ssgcid, 34.6 23 0.0008 34.7 3.4 31 178-211 32-62 (267)
290 3nbx_X ATPase RAVA; AAA+ ATPas 34.1 22 0.00077 38.9 3.4 34 165-198 32-65 (500)
291 1hyq_A MIND, cell division inh 34.1 40 0.0014 32.8 5.0 33 178-212 7-39 (263)
292 2oze_A ORF delta'; para, walke 33.8 62 0.0021 32.1 6.6 38 181-220 44-83 (298)
293 2b4a_A BH3024; flavodoxin-like 33.5 2E+02 0.0067 24.0 9.1 91 495-592 38-130 (138)
294 3q9l_A Septum site-determining 33.4 37 0.0013 32.9 4.6 33 178-212 7-39 (260)
295 3end_A Light-independent proto 32.5 30 0.001 34.8 3.9 31 179-211 46-76 (307)
296 3iuy_A Probable ATP-dependent 32.4 1.2E+02 0.0043 28.3 8.3 72 495-573 93-173 (228)
297 2afh_E Nitrogenase iron protei 32.2 31 0.0011 34.4 3.9 29 180-210 8-36 (289)
298 3fwy_A Light-independent proto 32.2 31 0.0011 35.2 3.9 30 180-211 54-83 (314)
299 2lqo_A Putative glutaredoxin R 31.7 1E+02 0.0036 24.8 6.3 57 497-554 4-61 (92)
300 2r62_A Cell division protease 31.6 35 0.0012 33.3 4.2 25 174-198 44-68 (268)
301 1e9r_A Conjugal transfer prote 31.5 37 0.0013 36.2 4.6 40 174-215 53-92 (437)
302 3foj_A Uncharacterized protein 31.2 37 0.0013 27.6 3.6 38 494-531 54-91 (100)
303 2ph1_A Nucleotide-binding prot 30.7 43 0.0015 32.8 4.6 33 178-212 23-55 (262)
304 1gmx_A GLPE protein; transfera 30.6 57 0.002 26.8 4.7 38 494-531 56-94 (108)
305 1wv9_A Rhodanese homolog TT165 30.4 36 0.0012 27.4 3.3 35 497-531 54-88 (94)
306 1oyw_A RECQ helicase, ATP-depe 30.4 1.4E+02 0.0049 32.4 9.3 76 479-559 51-126 (523)
307 3iwh_A Rhodanese-like domain p 30.2 27 0.00092 29.0 2.5 38 494-531 54-91 (103)
308 3lda_A DNA repair protein RAD5 29.8 2.5E+02 0.0087 29.3 10.7 53 163-215 166-223 (400)
309 1qde_A EIF4A, translation init 29.8 1.2E+02 0.0039 28.4 7.5 87 479-573 62-161 (224)
310 2oap_1 GSPE-2, type II secreti 29.6 45 0.0015 36.6 4.8 39 156-197 245-283 (511)
311 1jr3_D DNA polymerase III, del 29.6 1.4E+02 0.0048 30.2 8.6 38 280-317 76-115 (343)
312 1z6t_A APAF-1, apoptotic prote 29.6 1.6E+02 0.0056 32.3 9.7 46 264-317 219-265 (591)
313 3dmn_A Putative DNA helicase; 29.1 2.3E+02 0.008 25.5 9.1 66 495-578 60-125 (174)
314 3n53_A Response regulator rece 29.0 2.5E+02 0.0086 23.3 11.1 91 496-592 26-121 (140)
315 1um8_A ATP-dependent CLP prote 28.8 46 0.0016 34.5 4.7 25 174-198 72-96 (376)
316 3eme_A Rhodanese-like domain p 28.7 39 0.0013 27.7 3.3 38 494-531 54-91 (103)
317 1dbw_A Transcriptional regulat 28.7 88 0.003 25.8 5.8 72 518-592 45-120 (126)
318 1p9r_A General secretion pathw 28.6 70 0.0024 34.0 6.1 53 155-211 150-202 (418)
319 3pxg_A Negative regulator of g 28.4 47 0.0016 35.9 4.7 29 173-201 200-228 (468)
320 2jtq_A Phage shock protein E; 28.2 78 0.0027 24.6 5.0 37 494-531 39-76 (85)
321 1mvo_A PHOP response regulator 28.1 1.3E+02 0.0043 25.1 6.8 91 496-592 27-120 (136)
322 2fsx_A RV0390, COG0607: rhodan 27.9 62 0.0021 28.5 4.8 38 494-531 78-116 (148)
323 1qkk_A DCTD, C4-dicarboxylate 27.8 61 0.0021 28.1 4.7 28 497-524 4-31 (155)
324 3cio_A ETK, tyrosine-protein k 27.7 58 0.002 32.8 5.0 32 178-211 109-140 (299)
325 2gkg_A Response regulator homo 27.5 82 0.0028 25.8 5.3 24 499-522 8-31 (127)
326 1tmy_A CHEY protein, TMY; chem 27.2 67 0.0023 26.2 4.6 69 519-590 46-118 (120)
327 3ea0_A ATPase, para family; al 27.2 57 0.0019 31.1 4.7 33 178-211 9-41 (245)
328 1nlf_A Regulatory protein REPA 27.2 1.2E+02 0.0042 29.6 7.4 52 172-224 28-88 (279)
329 3trf_A Shikimate kinase, SK; a 26.9 43 0.0015 30.5 3.6 25 174-198 5-29 (185)
330 3qmx_A Glutaredoxin A, glutare 26.9 1.9E+02 0.0064 23.4 7.2 61 495-556 14-75 (99)
331 3kht_A Response regulator; PSI 25.7 85 0.0029 26.7 5.2 26 497-522 6-31 (144)
332 3pg5_A Uncharacterized protein 25.7 37 0.0013 35.2 3.2 29 181-211 9-37 (361)
333 1dc7_A NTRC, nitrogen regulati 25.6 68 0.0023 26.2 4.4 96 495-594 26-122 (124)
334 1kht_A Adenylate kinase; phosp 25.3 60 0.0021 29.4 4.3 29 174-202 3-31 (192)
335 3ug7_A Arsenical pump-driving 25.3 65 0.0022 33.2 4.9 33 177-211 29-61 (349)
336 3iij_A Coilin-interacting nucl 25.2 57 0.0019 29.5 4.1 25 174-198 11-35 (180)
337 3hv2_A Response regulator/HD d 25.1 75 0.0026 27.5 4.8 29 496-524 14-42 (153)
338 3bfv_A CAPA1, CAPB2, membrane 25.0 63 0.0022 31.9 4.6 29 181-211 90-118 (271)
339 3f6c_A Positive transcription 24.9 1E+02 0.0034 25.7 5.5 94 495-594 24-121 (134)
340 1u0j_A DNA replication protein 24.9 39 0.0013 33.5 3.0 22 176-197 106-127 (267)
341 3vaa_A Shikimate kinase, SK; s 24.8 50 0.0017 30.6 3.7 26 173-198 24-49 (199)
342 3la6_A Tyrosine-protein kinase 24.7 71 0.0024 31.9 5.0 33 178-212 97-129 (286)
343 3h5i_A Response regulator/sens 24.5 3E+02 0.01 22.8 9.5 17 575-591 106-122 (140)
344 3dmp_A Uracil phosphoribosyltr 24.5 1.3E+02 0.0046 28.6 6.6 58 174-234 129-188 (217)
345 1ry6_A Internal kinesin; kines 24.3 47 0.0016 34.5 3.6 25 169-193 78-104 (360)
346 2csu_A 457AA long hypothetical 24.2 1.5E+02 0.0051 31.8 7.7 86 497-604 150-237 (457)
347 4a2p_A RIG-I, retinoic acid in 24.2 1.5E+02 0.0051 32.1 8.0 88 479-573 33-136 (556)
348 1ys7_A Transcriptional regulat 23.9 2.7E+02 0.0092 25.7 9.0 93 495-593 30-125 (233)
349 3tbk_A RIG-I helicase domain; 23.7 1.3E+02 0.0045 32.4 7.5 57 479-535 30-95 (555)
350 2xj4_A MIPZ; replication, cell 23.6 57 0.0019 32.4 4.0 40 180-221 11-53 (286)
351 1wcv_1 SOJ, segregation protei 23.4 48 0.0016 32.2 3.4 30 180-211 13-42 (257)
352 2hhg_A Hypothetical protein RP 23.4 61 0.0021 28.0 3.7 38 494-531 84-122 (139)
353 4a2q_A RIG-I, retinoic acid in 23.3 1.6E+02 0.0055 34.0 8.4 58 479-536 274-340 (797)
354 3ez2_A Plasmid partition prote 23.3 47 0.0016 34.8 3.5 34 178-211 113-150 (398)
355 3nhv_A BH2092 protein; alpha-b 23.3 64 0.0022 28.4 3.9 38 494-531 70-109 (144)
356 2woo_A ATPase GET3; tail-ancho 23.2 75 0.0026 32.4 4.9 34 177-212 22-55 (329)
357 3cnb_A DNA-binding response re 23.1 2E+02 0.007 23.8 7.2 95 495-595 32-132 (143)
358 1tq1_A AT5G66040, senescence-a 22.8 53 0.0018 28.2 3.2 38 494-531 80-118 (129)
359 3flh_A Uncharacterized protein 22.7 44 0.0015 28.5 2.6 38 494-531 69-108 (124)
360 2ius_A DNA translocase FTSK; n 22.7 1E+02 0.0036 33.6 6.1 42 173-214 166-209 (512)
361 1cr0_A DNA primase/helicase; R 22.5 1.3E+02 0.0046 29.6 6.6 50 164-214 25-74 (296)
362 3lua_A Response regulator rece 22.4 83 0.0029 26.6 4.4 94 495-595 28-129 (140)
363 3eod_A Protein HNR; response r 22.2 2.3E+02 0.0077 23.2 7.2 30 496-525 7-36 (130)
364 1oi7_A Succinyl-COA synthetase 22.2 2.3E+02 0.008 28.1 8.3 87 496-604 144-234 (288)
365 4b3f_X DNA-binding protein smu 21.9 1.1E+02 0.0037 34.5 6.3 49 479-527 216-264 (646)
366 2qv0_A Protein MRKE; structura 21.9 1.3E+02 0.0044 25.3 5.7 26 497-522 10-36 (143)
367 1wrb_A DJVLGB; RNA helicase, D 21.9 4.6E+02 0.016 24.6 10.4 71 496-573 100-180 (253)
368 2rb4_A ATP-dependent RNA helic 21.6 2.2E+02 0.0074 25.4 7.4 64 195-264 25-91 (175)
369 3snk_A Response regulator CHEY 21.6 35 0.0012 28.9 1.7 31 496-526 14-45 (135)
370 2k0z_A Uncharacterized protein 21.3 80 0.0027 26.1 3.9 38 494-531 54-91 (110)
371 3kcn_A Adenylate cyclase homol 21.3 2.6E+02 0.0089 23.7 7.7 11 521-531 49-59 (151)
372 1yio_A Response regulatory pro 21.1 2.6E+02 0.0089 25.3 8.0 37 520-556 48-84 (208)
373 3hjn_A DTMP kinase, thymidylat 20.9 57 0.0019 30.5 3.1 21 182-202 8-28 (197)
374 2yvu_A Probable adenylyl-sulfa 20.9 63 0.0022 29.4 3.5 33 176-210 15-47 (186)
375 3bor_A Human initiation factor 20.9 3.4E+02 0.012 25.4 9.1 89 479-573 78-179 (237)
376 3ilm_A ALR3790 protein; rhodan 20.7 75 0.0026 27.8 3.7 38 494-531 54-92 (141)
377 2c95_A Adenylate kinase 1; tra 20.6 84 0.0029 28.6 4.3 26 173-198 8-33 (196)
378 3eul_A Possible nitrate/nitrit 20.6 1.2E+02 0.004 26.1 5.1 25 496-520 15-39 (152)
379 1g41_A Heat shock protein HSLU 20.4 92 0.0032 33.3 5.0 25 174-198 50-74 (444)
380 4e7p_A Response regulator; DNA 20.4 99 0.0034 26.6 4.5 71 519-592 65-139 (150)
381 2yv2_A Succinyl-COA synthetase 20.3 3.1E+02 0.011 27.3 8.8 88 496-604 151-242 (297)
382 2ct6_A SH3 domain-binding glut 20.3 1.6E+02 0.0054 24.4 5.6 46 497-542 8-60 (111)
383 2yhs_A FTSY, cell division pro 20.2 3.2E+02 0.011 29.6 9.2 31 178-210 297-327 (503)
384 1qxn_A SUD, sulfide dehydrogen 20.1 72 0.0024 27.7 3.5 38 494-531 80-118 (137)
385 2nu8_A Succinyl-COA ligase [AD 20.1 2.7E+02 0.0091 27.6 8.2 87 496-604 144-234 (288)
386 1aky_A Adenylate kinase; ATP:A 20.1 70 0.0024 30.1 3.7 25 174-198 4-28 (220)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-86 Score=787.98 Aligned_cols=520 Identities=38% Similarity=0.642 Sum_probs=427.5
Q ss_pred cccccCCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHh-CCCCCCcEEEEcCccHHHHHHHHHHh
Q 004880 148 VSLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG-NGLHGPYLVIAPLSTLSNWVNEISRF 226 (725)
Q Consensus 148 ~p~~~~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~-~~~~~~~LIV~P~sll~~W~~E~~~~ 226 (725)
+|...+++|||||++||+||+..+.++.||||||+||+|||+|+|+++.++.. .+..+|+|||||.+++.||.+||.+|
T Consensus 229 p~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E~~~~ 308 (800)
T 3mwy_W 229 PPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKW 308 (800)
T ss_dssp CTTCCSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHHHHHH
T ss_pred CCccCCCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHHHHHHH
Confidence 56677899999999999999999999999999999999999999999998864 45678999999999999999999999
Q ss_pred CCCceEEEEeCChhhHHHHHHhcCCC------CCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEccccccCCcchHHH
Q 004880 227 VPSVSAIIYHGSKKERDEIRRKHMPR------AIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLL 300 (725)
Q Consensus 227 ~p~~~v~~~~g~~~~r~~~~~~~~~~------~~~~~~~vvItsye~~~~~~~~~l~~~~~~~vIvDEaH~ikn~~s~~~ 300 (725)
+|++.+++|+|+...+..++...+.. .....++|+||||+++.++. ..+...+|++|||||||++||..++.+
T Consensus 309 ~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~-~~l~~~~w~~vIvDEaH~lkn~~s~~~ 387 (800)
T 3mwy_W 309 APDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDR-AELGSIKWQFMAVDEAHRLKNAESSLY 387 (800)
T ss_dssp STTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTH-HHHHTSEEEEEEETTGGGGCCSSSHHH
T ss_pred CCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhH-HHHhcCCcceeehhhhhhhcCchhHHH
Confidence 99999999999999888776654322 23357899999999999885 678888999999999999999999999
Q ss_pred HHHhcCCCCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHHHHHHhhh
Q 004880 301 KELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILR 380 (725)
Q Consensus 301 ~~l~~l~~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 380 (725)
+++..+++.+||+|||||++|++.|||++++||.|+.|.....|.... .. ......+..|+.+++
T Consensus 388 ~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~----~~-----------~~~~~~~~~L~~~l~ 452 (800)
T 3mwy_W 388 ESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFEN----QD-----------EEQEEYIHDLHRRIQ 452 (800)
T ss_dssp HHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------C----CT-----------THHHHHHHHHHHTTG
T ss_pred HHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccc----cc-----------hhHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998666553211 10 011245778999999
Q ss_pred hhhhheehhhHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhh
Q 004880 381 PFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLE 460 (725)
Q Consensus 381 p~~lRR~k~dv~~~lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~~~~hp~l~~ 460 (725)
|+++||++.++...+|++.+.+++|+||+.|+.+|..++........ ....+....+.+.++.||++|+||+++.
T Consensus 453 p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~-----~~~~~~~~~~l~~l~~Lrk~~~hp~l~~ 527 (800)
T 3mwy_W 453 PFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALT-----AGAKGGHFSLLNIMNELKKASNHPYLFD 527 (800)
T ss_dssp GGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC---------------CTHHHHHHHHHHHHHCGGGSS
T ss_pred HHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHh-----hccccchhhHHHHHHHHHHHhcChhhhc
Confidence 99999999999999999999999999999999999998765432221 1122234568899999999999999986
Q ss_pred hhccCC---------CCCCchHHHHHhhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCC
Q 004880 461 SAFSDS---------CFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVR 531 (725)
Q Consensus 461 ~~~~~~---------~~~~~~~~l~~~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~ 531 (725)
...... ........++..|+|+..|.++|..+...|+||||||+++.++++|+.+|...|+++++++|+++
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~ 607 (800)
T 3mwy_W 528 NAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVP 607 (800)
T ss_dssp SHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSC
T ss_pred chHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 543210 11112356778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCCCceEEEEEecCCCHH
Q 004880 532 LDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVE 611 (725)
Q Consensus 532 ~~~R~~~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TiE 611 (725)
..+|++++++|+++++..++||+||++||+||||++|++||+||++|||..+.||+||+||+||+++|+||+|++.+|+|
T Consensus 608 ~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiE 687 (800)
T 3mwy_W 608 SAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVE 687 (800)
T ss_dssp HHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHH
T ss_pred HHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHH
Confidence 99999999999997778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccccccccccccCCHHHHHHhhcchhhhhhhh--hcCCCCHHHHHHHHhhhhccccC
Q 004880 612 GRILKRAFSKLKLEHVVIGKGQFHQERTKSNCIDALEEEDLLALLQDEETAEDKM--IQTDIGEEDLERVLDRADLIAGC 689 (725)
Q Consensus 612 e~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~~~el~~ll~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~ 689 (725)
++|++++..|..+.+.+++.+.......... ..++.++|.++|+.+...-... .+..+.++||+.+|+++....+.
T Consensus 688 e~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~--~~~~~~el~~ll~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 765 (800)
T 3mwy_W 688 EEVLERARKKMILEYAIISLGVTDGNKYTKK--NEPNAGELSAILKFGAGNMFTATDNQKKLEDLNLDDVLNHAEDHVTT 765 (800)
T ss_dssp HHHHHHHHHHTTSCC------------------CCCCHHHHHHHHSSCSSSSCCSHHHHHHHHTCCHHHHHHHCEECCCS
T ss_pred HHHHHHHHHHHHHHHHHHccCcccccccccc--cCCCHHHHHHHHHcchHhhhhccCccccccccCHHHHHHhhhhcccc
Confidence 9999999999999999999877654332221 2578899999998776432211 11235677899999999877654
Q ss_pred C
Q 004880 690 L 690 (725)
Q Consensus 690 ~ 690 (725)
+
T Consensus 766 ~ 766 (800)
T 3mwy_W 766 P 766 (800)
T ss_dssp C
T ss_pred c
Confidence 3
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.8e-80 Score=721.16 Aligned_cols=496 Identities=29% Similarity=0.452 Sum_probs=406.5
Q ss_pred ccCCcccchHHHHHHHHHHHh-----cCCCCeEEEcCCCCcHHHHHHHHHHHHHhCC-----CCCCcEEEEcCccHHHHH
Q 004880 151 LTGGKLKSYQLKGVKWLISLW-----QNGLNGILADQMGLGKTIQTIAFLAHLKGNG-----LHGPYLVIAPLSTLSNWV 220 (725)
Q Consensus 151 ~~~~~Lr~yQ~~gv~~l~~~~-----~~~~~~ILademGlGKT~qaiali~~l~~~~-----~~~~~LIV~P~sll~~W~ 220 (725)
.....|||||.+||+||+.++ .++.||||||+||+|||+|+|+++..+...+ ..+++|||||.+++.||.
T Consensus 51 ~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW~ 130 (644)
T 1z3i_X 51 VLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWY 130 (644)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHH
T ss_pred hhhhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHHHHH
Confidence 346789999999999999876 4677899999999999999999999987654 245799999999999999
Q ss_pred HHHHHhCCC-ceEEEEeC-ChhhHHH-HHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEccccccCCcch
Q 004880 221 NEISRFVPS-VSAIIYHG-SKKERDE-IRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKC 297 (725)
Q Consensus 221 ~E~~~~~p~-~~v~~~~g-~~~~r~~-~~~~~~~~~~~~~~~vvItsye~~~~~~~~~l~~~~~~~vIvDEaH~ikn~~s 297 (725)
+||.+|+|. +.++.++| +...+.. +............++|+|+||+.+..+. ..+....|++|||||||++||..+
T Consensus 131 ~E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~-~~l~~~~~~~vI~DEaH~ikn~~~ 209 (644)
T 1z3i_X 131 NEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA-EVLHKGKVGLVICDEGHRLKNSDN 209 (644)
T ss_dssp HHHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT-TTTTTSCCCEEEETTGGGCCTTCH
T ss_pred HHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH-HHhhcCCccEEEEECceecCChhh
Confidence 999999875 55555554 4443322 2221111112235789999999998875 677888999999999999999999
Q ss_pred HHHHHHhcCCCCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHHHHHH
Q 004880 298 KLLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHA 377 (725)
Q Consensus 298 ~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 377 (725)
+.++++..+++.+||+|||||++|++.|||++++|+.|+.+++...|.++|..+....................+.+|+.
T Consensus 210 ~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~ 289 (644)
T 1z3i_X 210 QTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELIS 289 (644)
T ss_dssp HHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999976532221111111222334467889999
Q ss_pred hhhhhhhheehhhHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChh
Q 004880 378 ILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPD 457 (725)
Q Consensus 378 ~l~p~~lRR~k~dv~~~lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~~~~hp~ 457 (725)
++.||++||++.++...||++.+.+++|+||+.|+.+|+.++...... ...............++.||++|+||.
T Consensus 290 ~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~-----~~~~~g~~~~~~l~~l~~Lrk~c~hp~ 364 (644)
T 1z3i_X 290 IVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPV-----ESLQTGKISVSSLSSITSLKKLCNHPA 364 (644)
T ss_dssp HHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGG-----GSSCTTCCCHHHHHHHHHHHHHHHCTH
T ss_pred HHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHH-----HHHhcCccchhHHHHHHHHHHHhCCHH
Confidence 999999999999999999999999999999999999999887543210 001111234567788999999999999
Q ss_pred hhhhhccC-CC-----------CCCchHHHHHhhcHHHHHHHHHHHHhh-CCCcEEEEccchhHHHHHHHHHhhcCceEE
Q 004880 458 LLESAFSD-SC-----------FYPPVEQIVEQCGKFRLLDRLLARLFA-RNHKVLVFSQWTKILDIMEYYFNEKGYEVC 524 (725)
Q Consensus 458 l~~~~~~~-~~-----------~~~~~~~l~~~s~K~~~L~~ll~~l~~-~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~ 524 (725)
++...... .. .+.........|+|+..|..++..+.. .++|+||||+++.+++.|+.+|...|++++
T Consensus 365 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~ 444 (644)
T 1z3i_X 365 LIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYV 444 (644)
T ss_dssp HHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEE
Confidence 98543210 00 000001112458999999999998864 689999999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCCCceEEEEE
Q 004880 525 RIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRL 604 (725)
Q Consensus 525 ~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrl 604 (725)
+++|+++..+|++++++|++++...++||+||++||+||||++|++||+||+||||..+.||+||+||+||+++|+||+|
T Consensus 445 ~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~l 524 (644)
T 1z3i_X 445 RLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRL 524 (644)
T ss_dssp EECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEE
T ss_pred EEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEE
Confidence 99999999999999999998666667899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccCCHHHHHHhhcchh
Q 004880 605 ATAQSVEGRILKRAFSKLKLEHVVIGKGQFHQERTKSNCIDALEEEDLLALLQDEE 660 (725)
Q Consensus 605 i~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~~~el~~ll~~~~ 660 (725)
++.+|+|++|++++..|..+++.|++++.. ....++.+||.+|+.-.+
T Consensus 525 v~~~tiEe~i~~~~~~K~~l~~~v~~~~~~--------~~~~~~~~~l~~Lf~~~~ 572 (644)
T 1z3i_X 525 LSTGTIEEKILQRQAHKKALSSCVVDEEQD--------VERHFSLGELRELFSLNE 572 (644)
T ss_dssp EETTSHHHHHHHHHHHHHHTSCCCCSCSSS--------CCCSSCHHHHHHHTCCCS
T ss_pred EECCCHHHHHHHHHHHHHHHHHHHhcCcch--------hhcCCCHHHHHHHhCCCC
Confidence 999999999999999999999999986531 122678899999987654
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=2.6e-74 Score=653.69 Aligned_cols=463 Identities=33% Similarity=0.551 Sum_probs=397.8
Q ss_pred ccccCCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHHHHHHHHHHhCC
Q 004880 149 SLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVP 228 (725)
Q Consensus 149 p~~~~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p 228 (725)
|......|+|||.+|+.|+...+..+.+|||||+||+|||+++++++..+...+..+++|||||.+++.||.+||.+|+|
T Consensus 31 p~~~~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qw~~e~~~~~~ 110 (500)
T 1z63_A 31 PYNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLSVLKNWEEELSKFAP 110 (500)
T ss_dssp CCSCSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECSTTHHHHHHHHHHHCT
T ss_pred ChhhhccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHHHHHHHHHHHHHHCC
Confidence 55567899999999999999888889999999999999999999999999888888899999999999999999999999
Q ss_pred CceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEccccccCCcchHHHHHHhcCCC
Q 004880 229 SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPI 308 (725)
Q Consensus 229 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~l~~~~~~~vIvDEaH~ikn~~s~~~~~l~~l~~ 308 (725)
...+.+++|.... .....++|+|+||+.+.++.. +....|++|||||||+++|..++.++++..+++
T Consensus 111 ~~~v~~~~g~~~~-----------~~~~~~~ivi~t~~~l~~~~~--l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~ 177 (500)
T 1z63_A 111 HLRFAVFHEDRSK-----------IKLEDYDIILTTYAVLLRDTR--LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKS 177 (500)
T ss_dssp TSCEEECSSSTTS-----------CCGGGSSEEEEEHHHHTTCHH--HHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCE
T ss_pred CceEEEEecCchh-----------ccccCCcEEEeeHHHHhccch--hcCCCcCEEEEeCccccCCHhHHHHHHHHhhcc
Confidence 9999999987621 112467999999999987752 677899999999999999999999999999999
Q ss_pred CcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHHHHHHhhhhhhhheeh
Q 004880 309 GNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRRMK 388 (725)
Q Consensus 309 ~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k 388 (725)
.++|+|||||++|++.|||++++|+.|+.+++...|...|..+.... .......|+.++.|+++||++
T Consensus 178 ~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~------------~~~~~~~l~~~l~~~~lrr~k 245 (500)
T 1z63_A 178 KYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKG------------DNMAKEELKAIISPFILRRTK 245 (500)
T ss_dssp EEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTT------------CHHHHHHHHHHHTTTEECCCT
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccc------------cHHHHHHHHHHHhhHeeeecc
Confidence 99999999999999999999999999999999999998886543221 123456788999999999999
Q ss_pred hh--HhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccCC
Q 004880 389 SD--VEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDS 466 (725)
Q Consensus 389 ~d--v~~~lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~~~~hp~l~~~~~~~~ 466 (725)
.+ +...+|++.+..+++++++.|+.+|+.+......... ...+......+...+..+|++|+||.++.....
T Consensus 246 ~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~-- 319 (500)
T 1z63_A 246 YDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNID----SVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQ-- 319 (500)
T ss_dssp TCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTT----TCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCC--
T ss_pred cccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHH----hhhcccchHHHHHHHHHHHHHhCCHHHhcCccc--
Confidence 76 6678999999999999999999999988765322110 011112234567788999999999998874321
Q ss_pred CCCCchHHHHHhhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhc-CceEEEEeCCCCHHHHHHHHHHHhCC
Q 004880 467 CFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEK-GYEVCRIDGSVRLDERKRQIQDFNDV 545 (725)
Q Consensus 467 ~~~~~~~~l~~~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~-g~~~~~l~G~~~~~~R~~~i~~F~~~ 545 (725)
....++|+..+.+++..+...++|+||||+++.+++.|..+|... |+.+..++|+++..+|++++++|++
T Consensus 320 --------~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~- 390 (500)
T 1z63_A 320 --------SVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQN- 390 (500)
T ss_dssp --------CSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHH-
T ss_pred --------hhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcC-
Confidence 134588999999999999999999999999999999999999886 9999999999999999999999998
Q ss_pred CCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCCCceEEEEEecCCCHHHHHHHHHHHHHHHH
Q 004880 546 NSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAFSKLKLE 625 (725)
Q Consensus 546 ~~~~~v~Llst~agg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TiEe~i~~~~~~K~~l~ 625 (725)
+++++++|+||+++|+||||+.|++||+||+||||..+.||+||+||+||+++|+||+|++.+|+|++|++++..|..++
T Consensus 391 ~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l~ 470 (500)
T 1z63_A 391 NPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLF 470 (500)
T ss_dssp CTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSSS
T ss_pred CCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 33566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCccccccccccccccCCHHHHHHhhcch
Q 004880 626 HVVIGKGQFHQERTKSNCIDALEEEDLLALLQDE 659 (725)
Q Consensus 626 ~~vi~~~~~~~~~~~~~~~~~~~~~el~~ll~~~ 659 (725)
+.+++++.- ....++.+||..++.-.
T Consensus 471 ~~~~~~~~~--------~~~~~~~~~l~~l~~~~ 496 (500)
T 1z63_A 471 KDIISSGDS--------WITELSTEELRKVIELS 496 (500)
T ss_dssp SSGGGSTTG--------GGGSSCHHHHHHHHSCC
T ss_pred HHHhhcCcc--------hhccCCHHHHHHHhccC
Confidence 999986531 12367788888887643
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=2.9e-52 Score=503.13 Aligned_cols=441 Identities=19% Similarity=0.242 Sum_probs=332.3
Q ss_pred CCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHHHHHHHHHHhCCCceE
Q 004880 153 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSA 232 (725)
Q Consensus 153 ~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~v 232 (725)
..+|+|||.+++.|++. ..+.++||||+||+|||+++++++..+...+..+++|||||.+++.||..||.+|+ +..+
T Consensus 151 ~~~LrpyQ~eav~~~l~--~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~sLl~Qw~~E~~~~f-~l~v 227 (968)
T 3dmq_A 151 RTSLIPHQLNIAHDVGR--RHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRF-NLRF 227 (968)
T ss_dssp SSCCCHHHHHHHHHHHH--SSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCTTTHHHHHHHHHHHS-CCCC
T ss_pred CCCCcHHHHHHHHHHHH--hcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCHHHHHHHHHHHHHHh-CCCE
Confidence 46899999999999987 44678999999999999999999999999888889999999999999999998888 6777
Q ss_pred EEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHH--HHhhhhcCccEEEEccccccCCcchH---HHHHHhcC-
Q 004880 233 IIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDA--RKYLRHYNWKYLVVDEGHRLKNPKCK---LLKELKYI- 306 (725)
Q Consensus 233 ~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~--~~~l~~~~~~~vIvDEaH~ikn~~s~---~~~~l~~l- 306 (725)
.+++|+...... . ........++|+|+||+.+.++. ...+...+|++|||||||+++|..+. .++.+..+
T Consensus 228 ~v~~~~~~~~~~-~---~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~ 303 (968)
T 3dmq_A 228 ALFDDERYAEAQ-H---DAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLA 303 (968)
T ss_dssp EECCHHHHHHHH-H---TTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHH
T ss_pred EEEccchhhhhh-h---hcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHh
Confidence 788776543321 1 11122246799999999997652 13466678999999999999987644 46777766
Q ss_pred -CCCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCC------------C-chhh---hHHHHH-----
Q 004880 307 -PIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGK------------C-NSEV---MKEELE----- 364 (725)
Q Consensus 307 -~~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~------------~-~~~~---~~~~~~----- 364 (725)
+++++|+|||||++|++.|+|++++|+.|+.|++...|..++..... . .... ......
T Consensus 304 ~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~ 383 (968)
T 3dmq_A 304 EHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIE 383 (968)
T ss_dssp TTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSS
T ss_pred hcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhH
Confidence 67889999999999999999999999999999999988876431100 0 0000 000000
Q ss_pred ----------HHHHHHHHHHHHHhh-----hhhhhheehhhHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Q 004880 365 ----------EKRRGQMVAKLHAIL-----RPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLRE 429 (725)
Q Consensus 365 ----------~~~~~~~~~~L~~~l-----~p~~lRR~k~dv~~~lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~ 429 (725)
..........+..++ ...++|+++..+. .+|.+....+.+++++.+...|......
T Consensus 384 ~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~-~~p~r~~~~~~l~~~~~~~~~~~~~~~~-------- 454 (968)
T 3dmq_A 384 PLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVK-GFPKRELHTIKLPLPTQYQTAIKVSGIM-------- 454 (968)
T ss_dssp TTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCC-CCCCCCCCEEEECCCHHHHHHHHHHHHT--------
T ss_pred HHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhc-ccChhheEeeecCCCHHHHHHHHHHhhh--------
Confidence 000000011122222 3455666666664 6898988999999999988877643110
Q ss_pred hhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccCCCCCCchHHHHHhhcHHHHHHHHHHHHhhCCCcEEEEccchhHH
Q 004880 430 KVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKIL 509 (725)
Q Consensus 430 ~~~~~~~~~~~~l~~~l~~Lr~~~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~l 509 (725)
......... ...+.+|..+...+... ....+..++|+..|.+++.. ..+.|+||||++..++
T Consensus 455 ---~~~~~~~~~--------~~~~l~pe~~~~~l~~~-----~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~ 516 (968)
T 3dmq_A 455 ---GARKSAEDR--------ARDMLYPERIYQEFEGD-----NATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATA 516 (968)
T ss_dssp ---TCCSSGGGG--------THHHHCSGGGTTTTTSS-----SCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHH
T ss_pred ---hhhhhhHHH--------HhhhcChHHHHHHhhhh-----hhcccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHH
Confidence 000000000 01122343333322221 11223457899999999987 5789999999999999
Q ss_pred HHHHHHHhh-cCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhhHhH
Q 004880 510 DIMEYYFNE-KGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMD 588 (725)
Q Consensus 510 d~l~~~L~~-~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~~D~~wNp~~~~Qa~g 588 (725)
+.|...|.. .|+++..+||+++..+|.+++++|+++++.+.| |++|+++++|||++.|++||+||+||||..+.|++|
T Consensus 517 ~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~v-LvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~G 595 (968)
T 3dmq_A 517 LQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQV-LLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIG 595 (968)
T ss_dssp HHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEE-EECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccE-EEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhh
Confidence 999999995 599999999999999999999999985434555 889999999999999999999999999999999999
Q ss_pred hhHhcCCCCceEEEEEecCCCHHHHHHHHHHHHHHHHHHH
Q 004880 589 RCHRIGQTKPVHVYRLATAQSVEGRILKRAFSKLKLEHVV 628 (725)
Q Consensus 589 R~~RiGQ~k~V~Vyrli~~~TiEe~i~~~~~~K~~l~~~v 628 (725)
|++|+||++.|.||++++.+|+|++|++.+..|..++...
T Consensus 596 R~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~~ 635 (968)
T 3dmq_A 596 RLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHT 635 (968)
T ss_dssp TTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSSC
T ss_pred ccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCceecC
Confidence 9999999999999999999999999999998888765443
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.1e-46 Score=423.25 Aligned_cols=438 Identities=16% Similarity=0.167 Sum_probs=288.3
Q ss_pred CCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcC-ccHHHHHHHHHHhC--CC
Q 004880 153 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL-STLSNWVNEISRFV--PS 229 (725)
Q Consensus 153 ~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~-sll~~W~~E~~~~~--p~ 229 (725)
+.+|+|||.+++.|++. + ++||+++||+|||+++++++..+.. +..+++|||||. +++.||.+++.+|+ |.
T Consensus 7 ~~~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~-~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLT-KYGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp HHCCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHH-HSCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CCCccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 35899999999999975 4 9999999999999999999887765 445799999997 68899999999998 56
Q ss_pred ceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEccccccCCcch--HHHHHHh-c
Q 004880 230 VSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNPKC--KLLKELK-Y 305 (725)
Q Consensus 230 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~-~l~~~~~~~vIvDEaH~ikn~~s--~~~~~l~-~ 305 (725)
..+..++|........... ..++|+|+||+.+.+.... .+...+|++||+||||++++... .+...+. .
T Consensus 81 ~~v~~~~g~~~~~~~~~~~-------~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~ 153 (494)
T 1wp9_A 81 EKIVALTGEKSPEERSKAW-------ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQ 153 (494)
T ss_dssp GGEEEECSCSCHHHHHHHH-------HHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHH
T ss_pred hheEEeeCCcchhhhhhhc-------cCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhc
Confidence 6899999877554322111 2468999999999887532 34456799999999999986432 2222222 2
Q ss_pred CCCCcEEEEeccCCCCChHHhhhhhccccCC---CCCCHHHHHHHhcccCCCch-hhhHHHHHHHHHHHHHHHHHHhhhh
Q 004880 306 IPIGNKLLLTGTPLQNNLAELWSLLHFILPD---IFSSLEEFQSWFDLSGKCNS-EVMKEELEEKRRGQMVAKLHAILRP 381 (725)
Q Consensus 306 l~~~~rllLTgTP~~n~~~el~sll~~l~p~---~~~~~~~F~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~~l~p 381 (725)
.+..++|+|||||. |+..+++.+++++.+. .......+...+........ ... .......+...+.+
T Consensus 154 ~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 224 (494)
T 1wp9_A 154 AKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVD--------LPEIYKEVRKLLRE 224 (494)
T ss_dssp CSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEEC--------CCHHHHHHHHHHHH
T ss_pred CCCCeEEEEecCCC-CCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecC--------CcHHHHHHHHHHHH
Confidence 46788999999999 6677777777666543 22211111111111000000 000 00233456667888
Q ss_pred hhhheehhhHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHH--------------H--HHHhhhhcCCcchhHHHHH
Q 004880 382 FLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLEN--------------H--LREKVFSAGRGMKGKLNNL 445 (725)
Q Consensus 382 ~~lRR~k~dv~~~lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~--------------~--~~~~~~~~~~~~~~~l~~~ 445 (725)
++.++.+......+..... ..++.....-....+...+.. . +..............+...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (494)
T 1wp9_A 225 MLRDALKPLAETGLLESSS----PDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAY 300 (494)
T ss_dssp HHHHHHHHHHHHTSSSCCC----TTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccccccC----CCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Confidence 8888887777665543321 112222111000000000000 0 0000000000011122223
Q ss_pred HHHHHHhcCChhhhh--hhccCCCCCCchHHHH----------HhhcHHHHHHHHHHHHh--hCCCcEEEEccchhHHHH
Q 004880 446 MVQLRKNCNHPDLLE--SAFSDSCFYPPVEQIV----------EQCGKFRLLDRLLARLF--ARNHKVLVFSQWTKILDI 511 (725)
Q Consensus 446 l~~Lr~~~~hp~l~~--~~~~~~~~~~~~~~l~----------~~s~K~~~L~~ll~~l~--~~~~kvlIFsq~~~~ld~ 511 (725)
+..+...+.|+.... .... .+.....+ ..++|+..|.++|.... ..++|+||||+++.+++.
T Consensus 301 ~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~ 376 (494)
T 1wp9_A 301 IKKLYEEAKAGSTKASKEIFS----DKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKK 376 (494)
T ss_dssp HHHHHHHHHTTCCHHHHHHHT----SHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHH
T ss_pred HHHHHHhhccccchhhhhhhh----hHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHH
Confidence 333333322211000 0000 00011111 34679999999999877 578999999999999999
Q ss_pred HHHHHhhcCceEEEEeC--------CCCHHHHHHHHHHHhCCCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchh
Q 004880 512 MEYYFNEKGYEVCRIDG--------SVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMD 583 (725)
Q Consensus 512 l~~~L~~~g~~~~~l~G--------~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~~D~~wNp~~~ 583 (725)
+..+|...|+++..++| +++..+|++++++|+++. +. +|++|+++|+|||+++|++||+||+||||..+
T Consensus 377 l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~--~~-vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~ 453 (494)
T 1wp9_A 377 IVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGE--FN-VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRS 453 (494)
T ss_dssp HHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTS--CS-EEEECGGGGGGGGSTTCCEEEESSCCHHHHHH
T ss_pred HHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCC--ce-EEEECCccccCCCchhCCEEEEeCCCCCHHHH
Confidence 99999999999999999 899999999999999743 44 59999999999999999999999999999999
Q ss_pred hhHhHhhHhcCCCCceEEEEEecCCCHHHHHHHHHHHHHHHHH
Q 004880 584 LQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAFSKLKLEH 626 (725)
Q Consensus 584 ~Qa~gR~~RiGQ~k~V~Vyrli~~~TiEe~i~~~~~~K~~l~~ 626 (725)
.||+||+||.|| +.+|+|++.+|+|++++.++..|.++.+
T Consensus 454 ~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 454 IQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp HHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred HHHHhhccCCCC---ceEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 999999999998 8999999999999999999999987754
No 6
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=7.5e-45 Score=376.25 Aligned_cols=255 Identities=29% Similarity=0.408 Sum_probs=193.3
Q ss_pred hhheehhhHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhh
Q 004880 383 LLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESA 462 (725)
Q Consensus 383 ~lRR~k~dv~~~lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~~~~hp~l~~~~ 462 (725)
-+||+|++|..+||++.+.+++|+||+.|+.+|+.++......... ..+......+++.++.||++|+||.++...
T Consensus 13 ~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~----~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~~ 88 (271)
T 1z5z_A 13 GLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDS----VTGIKRKGMILSTLLKLKQIVDHPALLKGG 88 (271)
T ss_dssp ---------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTT----CCHHHHHHHHHHHHHHHHHHTTCTHHHHCS
T ss_pred cccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHh----ccccchHHHHHHHHHHHHHHcCCHHHhcCC
Confidence 4799999999999999999999999999999999998765432210 011112345788899999999999998732
Q ss_pred ccCCCCCCchHHHHHhhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhc-CceEEEEeCCCCHHHHHHHHHH
Q 004880 463 FSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEK-GYEVCRIDGSVRLDERKRQIQD 541 (725)
Q Consensus 463 ~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~-g~~~~~l~G~~~~~~R~~~i~~ 541 (725)
. .+...++|+..|.++|..+...++|+||||+++.+++.|..+|... |+++++++|+++..+|++++++
T Consensus 89 ~----------~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~ 158 (271)
T 1z5z_A 89 E----------QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISK 158 (271)
T ss_dssp C----------CCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHH
T ss_pred c----------cccccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHH
Confidence 1 1234689999999999999999999999999999999999999985 9999999999999999999999
Q ss_pred HhCCCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCCCceEEEEEecCCCHHHHHHHHHHHH
Q 004880 542 FNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAFSK 621 (725)
Q Consensus 542 F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TiEe~i~~~~~~K 621 (725)
|++ +++++|||+||++||+||||+.|++||+||+||||..+.||+||+||+||+++|+||+|++.+|+|++|++++..|
T Consensus 159 F~~-~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K 237 (271)
T 1z5z_A 159 FQN-NPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFK 237 (271)
T ss_dssp HHH-CTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHC
T ss_pred hcC-CCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHHHH
Confidence 998 3466789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCccccccccccccccCCHHHHHHhhcchh
Q 004880 622 LKLEHVVIGKGQFHQERTKSNCIDALEEEDLLALLQDEE 660 (725)
Q Consensus 622 ~~l~~~vi~~~~~~~~~~~~~~~~~~~~~el~~ll~~~~ 660 (725)
..+++.+++.+.. ....++.+||.+++.-..
T Consensus 238 ~~l~~~~~~~~~~--------~~~~~~~~~l~~l~~~~~ 268 (271)
T 1z5z_A 238 RSLFKDIISSGDS--------WITELSTEELRKVIELSV 268 (271)
T ss_dssp HHHHTTGGGGTTH--------HHHTSCHHHHHHHHSCCC
T ss_pred HHHHHHHHccCch--------hhhcCCHHHHHHHhccCC
Confidence 9999999986531 123678888888887543
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.5e-42 Score=390.04 Aligned_cols=372 Identities=18% Similarity=0.259 Sum_probs=263.1
Q ss_pred cCCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcC-ccHHHHHHHHHHhCCCc
Q 004880 152 TGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL-STLSNWVNEISRFVPSV 230 (725)
Q Consensus 152 ~~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p~~ 230 (725)
.+.+|+|||.+++.+++. +.++||+++||+|||++++.++..+ .+++|||||. +++.||.++|.+| +.
T Consensus 90 ~~~~l~~~Q~~ai~~i~~----~~~~ll~~~TGsGKT~~~l~~i~~~-----~~~~Lvl~P~~~L~~Q~~~~~~~~--~~ 158 (472)
T 2fwr_A 90 AEISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGIF--GE 158 (472)
T ss_dssp CCCCBCHHHHHHHHHHTT----TTEEEEECCTTSCHHHHHHHHHHHH-----CSCEEEEESSHHHHHHHHHHGGGG--CG
T ss_pred CCCCcCHHHHHHHHHHHh----cCCEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHhC--CC
Confidence 456899999999998764 5679999999999999999888765 4689999998 7899999999995 56
Q ss_pred e-EEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEccccccCCcchHHHHHHhcCCCC
Q 004880 231 S-AIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIG 309 (725)
Q Consensus 231 ~-v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~l~~~~~~~vIvDEaH~ikn~~s~~~~~l~~l~~~ 309 (725)
. +.+++|... ...+|+|+||+.+..... .+. .+|++|||||||++.+.... ..+..++..
T Consensus 159 ~~v~~~~g~~~---------------~~~~Ivv~T~~~l~~~~~-~~~-~~~~liIvDEaH~~~~~~~~--~~~~~~~~~ 219 (472)
T 2fwr_A 159 EYVGEFSGRIK---------------ELKPLTVSTYDSAYVNAE-KLG-NRFMLLIFDEVHHLPAESYV--QIAQMSIAP 219 (472)
T ss_dssp GGEEEBSSSCB---------------CCCSEEEEEHHHHHHTHH-HHT-TTCSEEEEETGGGTTSTTTH--HHHHTCCCS
T ss_pred cceEEECCCcC---------------CcCCEEEEEcHHHHHHHH-Hhc-CCCCEEEEECCcCCCChHHH--HHHHhcCCC
Confidence 6 888887653 245899999999887653 232 35999999999999987654 356667888
Q ss_pred cEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHHHHHHhhhhhhhheehh
Q 004880 310 NKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRRMKS 389 (725)
Q Consensus 310 ~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~ 389 (725)
++|+|||||.+++-.+ ..+..++.|.+.++...
T Consensus 220 ~~l~lSATp~~~~~~~-----------------------------------------------~~l~~~~~~~~~~~~~~ 252 (472)
T 2fwr_A 220 FRLGLTATFEREDGRH-----------------------------------------------EILKEVVGGKVFELFPD 252 (472)
T ss_dssp EEEEEESCCCCTTSGG-----------------------------------------------GSHHHHTCCEEEECCHH
T ss_pred eEEEEecCccCCCCHH-----------------------------------------------HHHHHHhCCeEeecCHH
Confidence 9999999998654221 01223345555555555
Q ss_pred hHhh-cCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccCCCC
Q 004880 390 DVEQ-MLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCF 468 (725)
Q Consensus 390 dv~~-~lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~~~~hp~l~~~~~~~~~~ 468 (725)
++.. .+++.....+.+.+++.+...|..+...... .+....... .....+. ..+..........
T Consensus 253 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~--~~~~~~~------------~~~~~~~~~~~~~ 317 (472)
T 2fwr_A 253 SLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQ-FLRARGITL--RRAEDFN------------KIVMASGYDERAY 317 (472)
T ss_dssp HHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHS-CSSSCCCTT--TCCSSST------------TTTTTTCCSSSSS
T ss_pred HHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHH-HHHhcCccc--cchhhHH------------HHHHHhccCHHHH
Confidence 5533 4777777788999999999888766443211 000000000 0000000 0000000000000
Q ss_pred CCc------hHHHHHhhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHH
Q 004880 469 YPP------VEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDF 542 (725)
Q Consensus 469 ~~~------~~~l~~~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F 542 (725)
... .......+.|+..|.+++.. ..++++||||++..+++.+...|. +..++|+++..+|++++++|
T Consensus 318 ~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F 390 (472)
T 2fwr_A 318 EALRAWEEARRIAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGF 390 (472)
T ss_dssp TTTHHHHHHHHHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHH
T ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHH
Confidence 000 00123346799999999987 568999999999999999999884 45689999999999999999
Q ss_pred hCCCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCC-CceEEEEEecCCCHHHHHHHHHHHH
Q 004880 543 NDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQT-KPVHVYRLATAQSVEGRILKRAFSK 621 (725)
Q Consensus 543 ~~~~~~~~v~Llst~agg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~-k~V~Vyrli~~~TiEe~i~~~~~~K 621 (725)
+++ .+.| |++|+++++|||++.+++||+||++|||..+.|++||++|.||. +.|.||.|++.+|+|+++.++...|
T Consensus 391 ~~g--~~~v-Lv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~ 467 (472)
T 2fwr_A 391 RTG--RFRA-IVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNA 467 (472)
T ss_dssp HHS--SCSB-CBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC-----------
T ss_pred hCC--CCCE-EEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHHHHHHHHHh
Confidence 973 4444 89999999999999999999999999999999999999999998 7899999999999999999998887
Q ss_pred HHHH
Q 004880 622 LKLE 625 (725)
Q Consensus 622 ~~l~ 625 (725)
.+++
T Consensus 468 ~~~a 471 (472)
T 2fwr_A 468 AKGA 471 (472)
T ss_dssp ----
T ss_pred hccC
Confidence 7654
No 8
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.1e-39 Score=374.03 Aligned_cols=445 Identities=14% Similarity=0.159 Sum_probs=218.4
Q ss_pred CCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCC---CCCcEEEEcC-ccHHHHHHHHHHhCC
Q 004880 153 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGL---HGPYLVIAPL-STLSNWVNEISRFVP 228 (725)
Q Consensus 153 ~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~---~~~~LIV~P~-sll~~W~~E~~~~~p 228 (725)
..+|+|||.+++.+++. +.++|++++||+|||++++..+......+. .+++|||||. .++.||.+++.++++
T Consensus 5 ~~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 5 TKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp ---CCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 45899999999999975 789999999999999999888877766544 6789999998 688999999999987
Q ss_pred --CceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hh-hhcCccEEEEccccccCCcchHHHHHHh
Q 004880 229 --SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YL-RHYNWKYLVVDEGHRLKNPKCKLLKELK 304 (725)
Q Consensus 229 --~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~-~l-~~~~~~~vIvDEaH~ikn~~s~~~~~l~ 304 (725)
++.+..++|............ ...+|+|+||+.+...+.. .+ ....|++|||||||++.+... ....+.
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~------~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~ 153 (556)
T 4a2p_A 81 RQGYSVQGISGENFSNVSVEKVI------EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMT 153 (556)
T ss_dssp GGTCCEEECCCC-----CHHHHH------HHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSH-HHHHHH
T ss_pred ccCceEEEEeCCCCcchhHHHhh------CCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcch-HHHHHH
Confidence 788888888774332211111 2468999999999877633 12 344689999999999987654 222111
Q ss_pred c---------CCCCcEEEEeccCCCCChHHhhhhh-------ccccCCC----CCCHHHHHHHhcccCCCchhhhHHHHH
Q 004880 305 Y---------IPIGNKLLLTGTPLQNNLAELWSLL-------HFILPDI----FSSLEEFQSWFDLSGKCNSEVMKEELE 364 (725)
Q Consensus 305 ~---------l~~~~rllLTgTP~~n~~~el~sll-------~~l~p~~----~~~~~~F~~~~~~~~~~~~~~~~~~~~ 364 (725)
. .+..++++|||||.+++..++...+ ..+.+.. ......+..++..+.........
T Consensus 154 ~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 229 (556)
T 4a2p_A 154 RYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKR---- 229 (556)
T ss_dssp HHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCC----
T ss_pred HHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCC----
Confidence 1 1346789999999887754433222 2222111 01112222222111000000000
Q ss_pred HHHHHHHHHHHHHhhhhhhhheehhhHhhcCCCceEE-EEEec-----------------------CCHHHHHHHHHHHH
Q 004880 365 EKRRGQMVAKLHAILRPFLLRRMKSDVEQMLPRKKEI-ILYAT-----------------------MTEHQRNFQDHLIN 420 (725)
Q Consensus 365 ~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~lP~k~e~-~v~~~-----------------------ls~~q~~~y~~l~~ 420 (725)
.....+...+..++ ..........++-.... .-... ....+..+|..+..
T Consensus 230 -----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (556)
T 4a2p_A 230 -----RIHNPFAAIISNLM-SETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFI 303 (556)
T ss_dssp -----CSCCHHHHHHHHHH-HHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHH
T ss_pred -----CcCChHHHHHHHHH-HHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 00000000000000 00000000000000000 00000 00000011111100
Q ss_pred HH--HHHHHHHhhhhcCCcc---hhHHHHHHHHHHHhcCChhhh--hhhccCCCCCCchHHHH-------HhhcHHHHHH
Q 004880 421 KT--LENHLREKVFSAGRGM---KGKLNNLMVQLRKNCNHPDLL--ESAFSDSCFYPPVEQIV-------EQCGKFRLLD 486 (725)
Q Consensus 421 ~~--~~~~~~~~~~~~~~~~---~~~l~~~l~~Lr~~~~hp~l~--~~~~~~~~~~~~~~~l~-------~~s~K~~~L~ 486 (725)
.. +..+..........+. ...+...+..++....++.-. ...+. .....+. ..++|+..|.
T Consensus 304 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~K~~~L~ 378 (556)
T 4a2p_A 304 CTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQ-----EKEPELIALSKDETNENPKLEELV 378 (556)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH-----TTHHHHHHHHHCSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHh-----hHHHHhhhhccCCCCCChHHHHHH
Confidence 00 0000000000000000 000111111111111000000 00000 0000000 1367999999
Q ss_pred HHHHHHh--hCCCcEEEEccchhHHHHHHHHHhhc------------CceEEEEeCCCCHHHHHHHHHHHhCCCCCceEE
Q 004880 487 RLLARLF--ARNHKVLVFSQWTKILDIMEYYFNEK------------GYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIF 552 (725)
Q Consensus 487 ~ll~~l~--~~~~kvlIFsq~~~~ld~l~~~L~~~------------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~ 552 (725)
++|.... ..++|+||||+++.+++.|..+|... |..+..+||+++..+|.+++++|++ ++.++ +
T Consensus 379 ~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~-~g~~~-v 456 (556)
T 4a2p_A 379 CILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT-SKDNR-L 456 (556)
T ss_dssp HHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC-------------------------------CC-E
T ss_pred HHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcc-cCceE-E
Confidence 9998876 67899999999999999999999775 5666777888999999999999997 23444 4
Q ss_pred EEecccccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCCCceEEEEEecCCCHHHHHHHHHHHHHHHHHHHhc
Q 004880 553 LLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAFSKLKLEHVVIG 630 (725)
Q Consensus 553 Llst~agg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TiEe~i~~~~~~K~~l~~~vi~ 630 (725)
|++|+++|+|||+++|++||+||+||||..|.||+|| |+.+++.+|.|++.++++++ +.....|..+...++.
T Consensus 457 LvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~k~~~~~~~i~ 529 (556)
T 4a2p_A 457 LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVE 529 (556)
T ss_dssp EEEEC-----------CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred EEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCceEEEEEeCcchHHH-HHhhHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999 44578999999999999999 6677778887777765
No 9
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=5.9e-39 Score=382.55 Aligned_cols=422 Identities=15% Similarity=0.146 Sum_probs=227.3
Q ss_pred ccCCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCC---CCCcEEEEcCc-cHHHHHHHHHHh
Q 004880 151 LTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGL---HGPYLVIAPLS-TLSNWVNEISRF 226 (725)
Q Consensus 151 ~~~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~---~~~~LIV~P~s-ll~~W~~E~~~~ 226 (725)
....+|+|||.+++.+++. +.++|++++||+|||++++..+......+. .+++|||||.. ++.||.+++.+|
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~----~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~ 319 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHH 319 (797)
T ss_dssp ----CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHh----CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 3367899999999999875 789999999999999999888877766544 67899999965 889999999999
Q ss_pred CC--CceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hh-hhcCccEEEEccccccCCcchHHHHH
Q 004880 227 VP--SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YL-RHYNWKYLVVDEGHRLKNPKCKLLKE 302 (725)
Q Consensus 227 ~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~-~l-~~~~~~~vIvDEaH~ikn~~s~~~~~ 302 (725)
++ ++.+..++|............ ..++|+|+||+.+.+.+.. .+ ...+|++|||||||++.+... ....
T Consensus 320 ~~~~~~~v~~~~g~~~~~~~~~~~~------~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~-~~~i 392 (797)
T 4a2q_A 320 FERQGYSVQGISGENFSNVSVEKVI------EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVL 392 (797)
T ss_dssp HGGGTCCEEEECCC-----CHHHHH------HTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSH-HHHH
T ss_pred cccCCceEEEEeCCcchhhhHHHhh------CCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCcc-HHHH
Confidence 87 789999999875433211111 3578999999999877632 12 234579999999999987643 2221
Q ss_pred Hhc---------CCCCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHH
Q 004880 303 LKY---------IPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVA 373 (725)
Q Consensus 303 l~~---------l~~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (725)
+.. .+..++++|||||.+++..+++..++.+.
T Consensus 393 ~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~--------------------------------------- 433 (797)
T 4a2q_A 393 MTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHIC--------------------------------------- 433 (797)
T ss_dssp HHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHH---------------------------------------
T ss_pred HHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHH---------------------------------------
Confidence 111 23467899999999877655444333221
Q ss_pred HHHHhhhhhhhhe---ehhhHhhcCCCceEEEEEec--CCHHHHHHHHHHHHHHH---HH--------------------
Q 004880 374 KLHAILRPFLLRR---MKSDVEQMLPRKKEIILYAT--MTEHQRNFQDHLINKTL---EN-------------------- 425 (725)
Q Consensus 374 ~L~~~l~p~~lRR---~k~dv~~~lP~k~e~~v~~~--ls~~q~~~y~~l~~~~~---~~-------------------- 425 (725)
.|...+.+..+.. ...++...++......+.+. ..+.....+..+..... ..
T Consensus 434 ~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~ 513 (797)
T 4a2q_A 434 SLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNY 513 (797)
T ss_dssp HHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHH
T ss_pred HHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhH
Confidence 0111111000000 00111112222222222222 22222222221111100 00
Q ss_pred --HHHH---hhhhcCCcc-------hhHHHHHHHHHHHhcCChhhhhhh----------------ccCCCCCCchHHHH-
Q 004880 426 --HLRE---KVFSAGRGM-------KGKLNNLMVQLRKNCNHPDLLESA----------------FSDSCFYPPVEQIV- 476 (725)
Q Consensus 426 --~~~~---~~~~~~~~~-------~~~l~~~l~~Lr~~~~hp~l~~~~----------------~~~~~~~~~~~~l~- 476 (725)
+... ......... ...+......+++.. +...+... ............+.
T Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 592 (797)
T 4a2q_A 514 EHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYN-DALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTA 592 (797)
T ss_dssp HHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH-HHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHH
Confidence 0000 000000000 000000011111100 00000000 00000000000000
Q ss_pred -----------------HhhcHHHHHHHHHHHHh--hCCCcEEEEccchhHHHHHHHHHhh------------cCceEEE
Q 004880 477 -----------------EQCGKFRLLDRLLARLF--ARNHKVLVFSQWTKILDIMEYYFNE------------KGYEVCR 525 (725)
Q Consensus 477 -----------------~~s~K~~~L~~ll~~l~--~~~~kvlIFsq~~~~ld~l~~~L~~------------~g~~~~~ 525 (725)
..++|+..|.++|.... ..++|+||||+++.+++.|..+|.. .|..+..
T Consensus 593 ~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~ 672 (797)
T 4a2q_A 593 KFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRD 672 (797)
T ss_dssp HHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-------
T ss_pred HHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcc
Confidence 13679999999998754 6679999999999999999999976 3667788
Q ss_pred EeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCCCceEEEEEe
Q 004880 526 IDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLA 605 (725)
Q Consensus 526 l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli 605 (725)
+||+++..+|.+++++|++ ++.++ +|+||+++|+|||+++|++||+||+||||..+.||+|| +| .+++.+|.|+
T Consensus 673 ~hg~~~~~eR~~~l~~F~~-~g~~~-vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR---~~~g~~i~l~ 746 (797)
T 4a2q_A 673 QTTGMTLPSQKGVLDAFKT-SKDNR-LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR---AAGSKCILVT 746 (797)
T ss_dssp ----------------------CCS-EEEEECC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEE
T ss_pred cCCCCCHHHHHHHHHHhhc-cCCce-EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CC---CCCceEEEEE
Confidence 8999999999999999997 23444 59999999999999999999999999999999999999 44 5889999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHhc
Q 004880 606 TAQSVEGRILKRAFSKLKLEHVVIG 630 (725)
Q Consensus 606 ~~~TiEe~i~~~~~~K~~l~~~vi~ 630 (725)
+.++++++ +.....|..+...++.
T Consensus 747 ~~~~~ee~-~~~~~~ke~~~~~~i~ 770 (797)
T 4a2q_A 747 SKTEVVEN-EKCNRYKEEMMNKAVE 770 (797)
T ss_dssp CCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred eCCcHHHH-HHHHHHHHHHHHHHHH
Confidence 99999999 6777788888777775
No 10
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.8e-39 Score=391.29 Aligned_cols=416 Identities=15% Similarity=0.168 Sum_probs=225.9
Q ss_pred cCCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCC---CCCcEEEEcCc-cHHHHHHHHHHhC
Q 004880 152 TGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGL---HGPYLVIAPLS-TLSNWVNEISRFV 227 (725)
Q Consensus 152 ~~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~---~~~~LIV~P~s-ll~~W~~E~~~~~ 227 (725)
...+|+|||.+++.+++. |.++|++++||+|||++++..+........ .+++|||||.. ++.||.+++.+|+
T Consensus 245 ~~~~~r~~Q~~ai~~il~----g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 245 ETKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (936)
T ss_dssp ---CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHc----CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 367899999999999975 789999999999999998888877665544 67899999966 8899999999998
Q ss_pred C--CceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hh-hhcCccEEEEccccccCCcchHHHHHH
Q 004880 228 P--SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YL-RHYNWKYLVVDEGHRLKNPKCKLLKEL 303 (725)
Q Consensus 228 p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~-~l-~~~~~~~vIvDEaH~ikn~~s~~~~~l 303 (725)
+ ++.+..++|....+...... ...++|+|+||+.+.+.+.. .+ ....|++|||||||++.+... ....+
T Consensus 321 ~~~~~~v~~~~G~~~~~~~~~~~------~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~-~~~i~ 393 (936)
T 4a2w_A 321 ERQGYSVQGISGENFSNVSVEKV------IEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLM 393 (936)
T ss_dssp HTTTCCEEEECCC-----CCHHH------HHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH-HHHHH
T ss_pred cccCceEEEEECCcchhhHHHHh------ccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCcc-HHHHH
Confidence 7 78899999987443211111 02468999999999877632 12 233589999999999987654 22222
Q ss_pred hc---------CCCCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHHH
Q 004880 304 KY---------IPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAK 374 (725)
Q Consensus 304 ~~---------l~~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (725)
.. .+..++++|||||.+++..+++..++.+..
T Consensus 394 ~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~--------------------------------------- 434 (936)
T 4a2w_A 394 TRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICS--------------------------------------- 434 (936)
T ss_dssp HHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHH---------------------------------------
T ss_pred HHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHH---------------------------------------
Confidence 11 234678999999998776555443332210
Q ss_pred HHHhhhhhhhhe---ehhhHhhcCCCceEEEEEec--CCHHHHHHHHHHHHHH---------------------------
Q 004880 375 LHAILRPFLLRR---MKSDVEQMLPRKKEIILYAT--MTEHQRNFQDHLINKT--------------------------- 422 (725)
Q Consensus 375 L~~~l~p~~lRR---~k~dv~~~lP~k~e~~v~~~--ls~~q~~~y~~l~~~~--------------------------- 422 (725)
|...+....+.. ...++...++......+.+. ..+.....+..+....
T Consensus 435 L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~ 514 (936)
T 4a2w_A 435 LCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYE 514 (936)
T ss_dssp HHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHH
T ss_pred HHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHH
Confidence 000111000000 00111111221111111111 1111111111110000
Q ss_pred ----------------------------------HHHHHHHhhhhcCCcc---hhHHHHHHHHHHHhcCChh---hhhhh
Q 004880 423 ----------------------------------LENHLREKVFSAGRGM---KGKLNNLMVQLRKNCNHPD---LLESA 462 (725)
Q Consensus 423 ----------------------------------~~~~~~~~~~~~~~~~---~~~l~~~l~~Lr~~~~hp~---l~~~~ 462 (725)
+..+............ ...+...+..++.....+. +.. .
T Consensus 515 ~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~-~ 593 (936)
T 4a2w_A 515 HWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTA-K 593 (936)
T ss_dssp HHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH-H
T ss_pred HHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHH-H
Confidence 0000000000000000 0001111111111000000 000 0
Q ss_pred ccCCCCCCchHHH-------HHhhcHHHHHHHHHHHHh--hCCCcEEEEccchhHHHHHHHHHhhc------------Cc
Q 004880 463 FSDSCFYPPVEQI-------VEQCGKFRLLDRLLARLF--ARNHKVLVFSQWTKILDIMEYYFNEK------------GY 521 (725)
Q Consensus 463 ~~~~~~~~~~~~l-------~~~s~K~~~L~~ll~~l~--~~~~kvlIFsq~~~~ld~l~~~L~~~------------g~ 521 (725)
+. .....+ ...++|+..|.++|.... ..++|+||||+++.+++.|..+|... |.
T Consensus 594 ~~-----~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~ 668 (936)
T 4a2w_A 594 FQ-----EKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGR 668 (936)
T ss_dssp HH-----HHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC---
T ss_pred HH-----HHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecC
Confidence 00 000000 013689999999999875 56799999999999999999999976 66
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCCCceEE
Q 004880 522 EVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHV 601 (725)
Q Consensus 522 ~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~V 601 (725)
.+..+||+++..+|.+++++|++ ++.++ +|+||+++|+|||++.|++||+||+||||..+.||+|| |+.+++.+
T Consensus 669 ~~~~~hg~m~~~eR~~il~~Fr~-~g~~~-VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~v 742 (936)
T 4a2w_A 669 GRRDQTTGMTLPSQKGVLDAFKT-SKDNR-LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKC 742 (936)
T ss_dssp --------------------------CCS-EEEEECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCE
T ss_pred CCcccCCCCCHHHHHHHHHHhhc-cCCee-EEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCCEE
Confidence 67777888999999999999997 23444 59999999999999999999999999999999999999 55688899
Q ss_pred EEEecCCCHHHHHHHHHHHHHHHHHHHhc
Q 004880 602 YRLATAQSVEGRILKRAFSKLKLEHVVIG 630 (725)
Q Consensus 602 yrli~~~TiEe~i~~~~~~K~~l~~~vi~ 630 (725)
|.|++.+|++++.+ ....|..+...++.
T Consensus 743 i~Li~~~t~ee~~~-~~~~ke~~~~~~i~ 770 (936)
T 4a2w_A 743 ILVTSKTEVVENEK-CNRYKEEMMNKAVE 770 (936)
T ss_dssp EEEESCHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred EEEEeCCCHHHHHH-HHHHHHHHHHHHHH
Confidence 99999999999866 66667777777765
No 11
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=8.7e-39 Score=366.10 Aligned_cols=419 Identities=17% Similarity=0.206 Sum_probs=238.9
Q ss_pred CcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCC---CCCcEEEEcC-ccHHHHHHHHHHhCC-
Q 004880 154 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGL---HGPYLVIAPL-STLSNWVNEISRFVP- 228 (725)
Q Consensus 154 ~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~---~~~~LIV~P~-sll~~W~~E~~~~~p- 228 (725)
.+|+|||.+++.+++. +.++|++++||+|||++++..+........ .+++|||||. .++.||.+++.++++
T Consensus 3 ~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 3 LKPRNYQLELALPAKK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhC----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4799999999999974 789999999999999998888877766544 6789999998 688999999999976
Q ss_pred -CceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHh-h-hhcCccEEEEccccccCCcchHHH---HH
Q 004880 229 -SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKY-L-RHYNWKYLVVDEGHRLKNPKCKLL---KE 302 (725)
Q Consensus 229 -~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~-l-~~~~~~~vIvDEaH~ikn~~s~~~---~~ 302 (725)
++.+..++|............ ...+|+|+||+.+...+... + ....|++|||||||++.+...... ..
T Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~------~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~ 152 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSVQHII------EDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRY 152 (555)
T ss_dssp TTCCEEEECTTTGGGSCHHHHH------HHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHH
T ss_pred CCcEEEEEcCCCcchhhHHHHh------cCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHH
Confidence 678888988874432211110 24689999999998776331 2 334589999999999987653221 11
Q ss_pred HhcC------CCCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHHHHH
Q 004880 303 LKYI------PIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLH 376 (725)
Q Consensus 303 l~~l------~~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 376 (725)
+... ...++++|||||.+++..++...++.+. .+.
T Consensus 153 ~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~---------------------------------------~l~ 193 (555)
T 3tbk_A 153 LDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHIC---------------------------------------KLC 193 (555)
T ss_dssp HHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHH---------------------------------------HHH
T ss_pred HHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHH---------------------------------------HHH
Confidence 1111 3357899999999987554443332220 000
Q ss_pred Hhhhhhhh---heehhhHhhcCCCceEEEEEec--CCHHHHHHHHHHHHHHHHHHHH-----------------------
Q 004880 377 AILRPFLL---RRMKSDVEQMLPRKKEIILYAT--MTEHQRNFQDHLINKTLENHLR----------------------- 428 (725)
Q Consensus 377 ~~l~p~~l---RR~k~dv~~~lP~k~e~~v~~~--ls~~q~~~y~~l~~~~~~~~~~----------------------- 428 (725)
..+....+ .....++....+......+.+. ..+.-......+.... .....
T Consensus 194 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~g~~~~~ 272 (555)
T 3tbk_A 194 AALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLMKET-EKLAKDVSEELGKLFQIQNREFGTQKYE 272 (555)
T ss_dssp HHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHHHHH-HHHHHTSCHHHHGGGGCCSCCSSSHHHH
T ss_pred HhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHHHHH-HHHHHHHHHhhhhhhhcccccccchhhh
Confidence 00110000 0001112222222222222222 2211111111111100 00000
Q ss_pred -------HhhhhcCCcc-------hhHHHHHHHHHHHhcCChhhhh----------------hhccCCCCCCchHHH---
Q 004880 429 -------EKVFSAGRGM-------KGKLNNLMVQLRKNCNHPDLLE----------------SAFSDSCFYPPVEQI--- 475 (725)
Q Consensus 429 -------~~~~~~~~~~-------~~~l~~~l~~Lr~~~~hp~l~~----------------~~~~~~~~~~~~~~l--- 475 (725)
.......... ...+......+++. ++...+. ..............+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (555)
T 3tbk_A 273 QWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKY-NDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRR 351 (555)
T ss_dssp HHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHH
T ss_pred HHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHH-HHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 0000000000 00000000000000 0000000 000000000000000
Q ss_pred ---------------HHhhcHHHHHHHHHHHHhh--CCCcEEEEccchhHHHHHHHHHhhc------------CceEEEE
Q 004880 476 ---------------VEQCGKFRLLDRLLARLFA--RNHKVLVFSQWTKILDIMEYYFNEK------------GYEVCRI 526 (725)
Q Consensus 476 ---------------~~~s~K~~~L~~ll~~l~~--~~~kvlIFsq~~~~ld~l~~~L~~~------------g~~~~~l 526 (725)
...++|+..|.++|..+.. .++|+||||+++.+++.|..+|... |..+..+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~ 431 (555)
T 3tbk_A 352 FEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNR 431 (555)
T ss_dssp HHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC------
T ss_pred HhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCccc
Confidence 0136799999999998764 4599999999999999999999876 3456666
Q ss_pred eCCCCHHHHHHHHHHHhCCCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCCCceEEEEEec
Q 004880 527 DGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLAT 606 (725)
Q Consensus 527 ~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~ 606 (725)
||+++..+|.+++++|++ ++.++| |++|+++|+|||++.|++||+||+||||..|.||+|| |+.+++.+|.|++
T Consensus 432 ~~~~~~~~R~~~~~~F~~-~g~~~v-LvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~ 505 (555)
T 3tbk_A 432 ATGMTLPAQKCVLEAFRA-SGDNNI-LIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTS 505 (555)
T ss_dssp ---------------------CCSE-EEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEES
T ss_pred ccccCHHHHHHHHHHHhc-CCCeeE-EEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEEEc
Confidence 779999999999999997 234444 8999999999999999999999999999999999999 6678899999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhc
Q 004880 607 AQSVEGRILKRAFSKLKLEHVVIG 630 (725)
Q Consensus 607 ~~TiEe~i~~~~~~K~~l~~~vi~ 630 (725)
.++.++. ......|.++.+..+.
T Consensus 506 ~~~~~~~-~~~~~~~e~~~~~~~~ 528 (555)
T 3tbk_A 506 SADVIEK-EKANMIKEKIMNESIL 528 (555)
T ss_dssp CHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred CCCHHHH-HHHhhHHHHHHHHHHH
Confidence 9998888 4555566666666654
No 12
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=100.00 E-value=1.9e-37 Score=320.12 Aligned_cols=217 Identities=17% Similarity=0.169 Sum_probs=168.3
Q ss_pred CCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhc--CCcchhHHHHHHHHHHHhcCChhhhhhhccCCCC--CC
Q 004880 395 LPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSA--GRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCF--YP 470 (725)
Q Consensus 395 lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~Lr~~~~hp~l~~~~~~~~~~--~~ 470 (725)
.|++.|++++++||+.|+++|+.++............... .......+.+++++||++||||+|+...+.+... ..
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p~~~~~~~ 99 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMPKSLITRD 99 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCCSCSCSTT
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccccCCccccccc
Confidence 4999999999999999999999998654433322111111 1112357889999999999999999544333222 23
Q ss_pred chHHHHHhhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCce
Q 004880 471 PVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYR 550 (725)
Q Consensus 471 ~~~~l~~~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~ 550 (725)
..+.+++.|||+.+|.++|..+.+.|+|||||||++.++|+|+++|..+|++|+|+||++...+ ++. .+++++
T Consensus 100 ~~~~l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k~------~~~~~~ 172 (328)
T 3hgt_A 100 VPAHLAENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AAA------NDFSCT 172 (328)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC--------------CCSEE
T ss_pred hhhHHHHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hhc------ccCCce
Confidence 4678999999999999999999999999999999999999999999999999999999966432 221 135678
Q ss_pred EEEEecccccCCCC-----CCCCCEEEEeCCCCCcchh-hhHhHhhHhc--CCCCceEEEEEecCCCHHHHHHHHHH
Q 004880 551 IFLLSTRAGGLGIN-----LTAADTCILYDSDWNPQMD-LQAMDRCHRI--GQTKPVHVYRLATAQSVEGRILKRAF 619 (725)
Q Consensus 551 v~Llst~agg~GiN-----L~~a~~VI~~D~~wNp~~~-~Qa~gR~~Ri--GQ~k~V~Vyrli~~~TiEe~i~~~~~ 619 (725)
++|+ |++||.|+| +++||+||+||++|||+.+ +||+.|+||+ ||+++|.||||++.+|||+.++..-.
T Consensus 173 i~Ll-tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~~~ 248 (328)
T 3hgt_A 173 VHLF-SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFFGK 248 (328)
T ss_dssp EEEE-ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHHHH
T ss_pred EEEE-ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHccC
Confidence 8777 668998886 8999999999999999998 9999999999 78999999999999999999987633
No 13
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=6.1e-36 Score=339.51 Aligned_cols=346 Identities=13% Similarity=0.151 Sum_probs=248.5
Q ss_pred CCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcC-ccHHHHHHHHHHh--CCC
Q 004880 153 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL-STLSNWVNEISRF--VPS 229 (725)
Q Consensus 153 ~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~-sll~~W~~E~~~~--~p~ 229 (725)
..+|+|||.+++.+++. +.+++|+++||+|||++++.++..+...+ .+++|||||. .+..||.++|.+| +|.
T Consensus 111 ~~~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~ 185 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY-EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (510)
T ss_dssp EECCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHHC-SSEEEEEESSHHHHHHHHHHHHHTTSSCG
T ss_pred CCCCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhCC-CCeEEEEECcHHHHHHHHHHHHHhhcCCc
Confidence 34899999999999886 57899999999999999988777666532 3599999997 5789999999999 666
Q ss_pred ceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEccccccCCcchHHHHHHhcC-CC
Q 004880 230 VSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYI-PI 308 (725)
Q Consensus 230 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~l~~~~~~~vIvDEaH~ikn~~s~~~~~l~~l-~~ 308 (725)
..+..++|....... .....+|+|+||+.+.+.....+ .+|++|||||||++.+. .....+..+ +.
T Consensus 186 ~~v~~~~~~~~~~~~---------~~~~~~I~i~T~~~l~~~~~~~~--~~~~liIiDE~H~~~~~--~~~~il~~~~~~ 252 (510)
T 2oca_A 186 AMIKKIGGGASKDDK---------YKNDAPVVVGTWQTVVKQPKEWF--SQFGMMMNDECHLATGK--SISSIISGLNNC 252 (510)
T ss_dssp GGEEECGGGCCTTGG---------GCTTCSEEEEEHHHHTTSCGGGG--GGEEEEEEETGGGCCHH--HHHHHGGGCTTC
T ss_pred cceEEEecCCccccc---------cccCCcEEEEeHHHHhhchhhhh--hcCCEEEEECCcCCCcc--cHHHHHHhcccC
Confidence 677777765432211 12468999999998766521222 36899999999999873 344556777 56
Q ss_pred CcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHHHHHHhhhhhhhheeh
Q 004880 309 GNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRRMK 388 (725)
Q Consensus 309 ~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k 388 (725)
.++++||||| .+...+++++..++.|..+... .. .
T Consensus 253 ~~~l~lSATp-~~~~~~~~~~~~~~~~~~~~~~----------~~---~------------------------------- 287 (510)
T 2oca_A 253 MFKFGLSGSL-RDGKANIMQYVGMFGEIFKPVT----------TS---K------------------------------- 287 (510)
T ss_dssp CEEEEEESCG-GGCSSCHHHHHHHHCSEECCCC----------CC-----------------------------------
T ss_pred cEEEEEEeCC-CCCcccHHHhHHhhCCeEEeeC----------HH---H-------------------------------
Confidence 7889999999 5555566666666655332100 00 0
Q ss_pred hhHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccCCCC
Q 004880 389 SDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCF 468 (725)
Q Consensus 389 ~dv~~~lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~~~~hp~l~~~~~~~~~~ 468 (725)
..-...+++.....+.+.+++....... +. .+.. .+..
T Consensus 288 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~------------------~~----~~~~---~~~~----------------- 325 (510)
T 2oca_A 288 LMEDGQVTELKINSIFLRYPDEFTTKLK------------------GK----TYQE---EIKI----------------- 325 (510)
T ss_dssp --------CCEEEEEEEECCHHHHHHHT------------------TC----CHHH---HHHH-----------------
T ss_pred HhhCCcCCCceEEEEeecCChHHhcccc------------------cc----chHH---HHHH-----------------
Confidence 0001135566666666777655431000 00 0000 0001
Q ss_pred CCchHHHHHhhcHHHHHHHHHHHHhhC-CCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCC
Q 004880 469 YPPVEQIVEQCGKFRLLDRLLARLFAR-NHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNS 547 (725)
Q Consensus 469 ~~~~~~l~~~s~K~~~L~~ll~~l~~~-~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~ 547 (725)
+.....|...+.+++...... +.++|||+. +..++.|...|...+.++..+||+++..+|.++++.|+++
T Consensus 326 ------~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g-- 396 (510)
T 2oca_A 326 ------ITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENG-- 396 (510)
T ss_dssp ------HHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHC--
T ss_pred ------HhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCC--
Confidence 111134556666777665554 566777777 8888889999999988999999999999999999999973
Q ss_pred CceEEEEec-ccccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCCC-ceEEEEEecCCCHHHH
Q 004880 548 SYRIFLLST-RAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTK-PVHVYRLATAQSVEGR 613 (725)
Q Consensus 548 ~~~v~Llst-~agg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k-~V~Vyrli~~~TiEe~ 613 (725)
.+.| |++| .++++|||++.+++||++|++||+..+.|++||++|.|+.+ .|.||.++...++.++
T Consensus 397 ~~~v-Lv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~~~~~~~~ 463 (510)
T 2oca_A 397 KGII-IVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDDAGVKPK 463 (510)
T ss_dssp CSCE-EEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEEECCBCCS
T ss_pred CCCE-EEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeecchhhhhh
Confidence 4444 7788 99999999999999999999999999999999999999988 6999999987764443
No 14
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=2.1e-35 Score=347.78 Aligned_cols=426 Identities=15% Similarity=0.169 Sum_probs=222.5
Q ss_pred cccCCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCC---CCCcEEEEcC-ccHHHHHHHHHH
Q 004880 150 LLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGL---HGPYLVIAPL-STLSNWVNEISR 225 (725)
Q Consensus 150 ~~~~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~---~~~~LIV~P~-sll~~W~~E~~~ 225 (725)
.+...+|+|||.+++.|++. +.++|++++||+|||++++.++......+. .+++|||+|. +++.||.+++.+
T Consensus 8 ~~g~~~lr~~Q~~~i~~~l~----g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~ 83 (696)
T 2ykg_A 8 LYSPFKPRNYQLELALPAMK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSK 83 (696)
T ss_dssp TTC--CCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred ccCCCCccHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 34446899999999999975 789999999999999999887776554332 3789999997 688999999999
Q ss_pred hCC--CceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHh-h-hhcCccEEEEccccccCCcchHHHH
Q 004880 226 FVP--SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKY-L-RHYNWKYLVVDEGHRLKNPKCKLLK 301 (725)
Q Consensus 226 ~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~-l-~~~~~~~vIvDEaH~ikn~~s~~~~ 301 (725)
+++ ++.+..++|....+....... ...+|+|+||+.+.+.+... + ...+|++|||||||++.+.......
T Consensus 84 ~~~~~~~~v~~~~g~~~~~~~~~~~~------~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i 157 (696)
T 2ykg_A 84 YFERHGYRVTGISGATAENVPVEQIV------ENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMI 157 (696)
T ss_dssp HTTTTTCCEEEECSSSCSSSCHHHHH------HTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHH
T ss_pred HhccCCceEEEEeCCccccccHHHhc------cCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHH
Confidence 987 678888888653321111110 25789999999998876431 2 3446899999999999876532211
Q ss_pred H---Hhc------CCCCcEEEEeccCCCCCh-------HHhhhhhccccCCCCC----CHHHHHHHhcccC-------CC
Q 004880 302 E---LKY------IPIGNKLLLTGTPLQNNL-------AELWSLLHFILPDIFS----SLEEFQSWFDLSG-------KC 354 (725)
Q Consensus 302 ~---l~~------l~~~~rllLTgTP~~n~~-------~el~sll~~l~p~~~~----~~~~F~~~~~~~~-------~~ 354 (725)
. +.. -+..++|+|||||..++. ..++.++..+....+. ...+...+...+. ..
T Consensus 158 ~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~ 237 (696)
T 2ykg_A 158 MFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESR 237 (696)
T ss_dssp HHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCC
T ss_pred HHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcc
Confidence 1 111 145778999999986543 3444444333332211 1111111111110 00
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhhhh--hheehhhHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhh
Q 004880 355 NSEVMKEELEEKRRGQMVAKLHAILRPFL--LRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVF 432 (725)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~L~~~l~p~~--lRR~k~dv~~~lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~ 432 (725)
..... ...+..++ ++.....+... |.. +..+..++.....|...+.............
T Consensus 238 ~~~~f----------------s~~~~~l~~~i~~l~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (696)
T 2ykg_A 238 ISDKF----------------KYIIAQLMRDTESLAKRICKD-LEN---LSQIQNREFGTQKYEQWIVTVQKACMVFQMP 297 (696)
T ss_dssp SCCHH----------------HHHHHHHHHHHHHHHHHHSTT-GGG---SSSCCSCCSSSHHHHHHHHHHHHTSCC----
T ss_pred cCChH----------------HHHHHHHHHHHHHHHHHHHHH-HHH---hhccccccccchhHHHHHHHHHHHHHHhhcc
Confidence 00000 00000000 01111111111 000 0001111111111111111000000000000
Q ss_pred h--cCCcchhHHHHHHHHHHHhcCChhhhhhhc----------------cCCCCCCchHH-HH-----------------
Q 004880 433 S--AGRGMKGKLNNLMVQLRKNCNHPDLLESAF----------------SDSCFYPPVEQ-IV----------------- 476 (725)
Q Consensus 433 ~--~~~~~~~~l~~~l~~Lr~~~~hp~l~~~~~----------------~~~~~~~~~~~-l~----------------- 476 (725)
. ........+......+++.. +|..+.... ... .....+. +.
T Consensus 298 ~~~~~~~~~~~l~~~~~~l~~~~-~~~~i~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~ 375 (696)
T 2ykg_A 298 DKDEESRICKALFLYTSHLRKYN-DALIISEHARMKDALDYLKDFFSNVRAA-GFDEIEQDLTQRFEEKLQELESVSRDP 375 (696)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHTTHHHHHHHHHCG
T ss_pred cchhhhHHHHHHHHHHHHHHHHh-HHHhccchhhHHHHHHHHHHHHHHHhhc-ccchHHHHHHHHHHHHHHHHHHHhcCC
Confidence 0 00000001111122222211 222111100 000 0111111 11
Q ss_pred -HhhcHHHHHHHHHHHHh--hCCCcEEEEccchhHHHHHHHHHhhcC----ceEEEEeC--------CCCHHHHHHHHHH
Q 004880 477 -EQCGKFRLLDRLLARLF--ARNHKVLVFSQWTKILDIMEYYFNEKG----YEVCRIDG--------SVRLDERKRQIQD 541 (725)
Q Consensus 477 -~~s~K~~~L~~ll~~l~--~~~~kvlIFsq~~~~ld~l~~~L~~~g----~~~~~l~G--------~~~~~~R~~~i~~ 541 (725)
..++|+..|.+++.... ..++++||||+++.+++.|..+|...| +++..++| +++..+|.+++++
T Consensus 376 ~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~ 455 (696)
T 2ykg_A 376 SNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDA 455 (696)
T ss_dssp GGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC------------------------
T ss_pred CCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHH
Confidence 14579999999998774 367899999999999999999999988 89999954 9999999999999
Q ss_pred HhCCCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCCCceEEEEEecCCCHHHH
Q 004880 542 FNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGR 613 (725)
Q Consensus 542 F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TiEe~ 613 (725)
|++ ++.++| |++|+++|+|||++++++||+||+|||+..+.||+|| +|. ++..+|.|++.+++++.
T Consensus 456 F~~-~g~~~v-LVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~~~ 521 (696)
T 2ykg_A 456 FKA-SGDHNI-LIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTSNAGVIEK 521 (696)
T ss_dssp ------CCSC-SEEEESSCCC---CCCSEEEEESCC--CCCC-------------CCCEEEEEESCHHHHHH
T ss_pred HHh-cCCccE-EEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEecCCCHHHH
Confidence 986 234444 8999999999999999999999999999999999999 884 67889999999887654
No 15
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2e-36 Score=356.77 Aligned_cols=436 Identities=14% Similarity=0.137 Sum_probs=244.3
Q ss_pred CCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCC----CCCCcEEEEcCc-cHHHH-HHHHHHh
Q 004880 153 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNG----LHGPYLVIAPLS-TLSNW-VNEISRF 226 (725)
Q Consensus 153 ~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~----~~~~~LIV~P~s-ll~~W-~~E~~~~ 226 (725)
..+|+|||.+++.+++. +.++||+++||+|||++++.++..+...+ ..+++|||+|.. ++.|| .++|.++
T Consensus 5 ~~~l~~~Q~~~i~~il~----g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~ 80 (699)
T 4gl2_A 5 MLQLRPYQMEVAQPALE----GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 80 (699)
T ss_dssp --CCCHHHHHHHHHHHS----SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHH
T ss_pred CCCccHHHHHHHHHHHh----CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 45899999999999985 78999999999999999988887665433 337999999976 78999 9999999
Q ss_pred CCC-ceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHH-------HHhhhhcCccEEEEccccccCCcc--
Q 004880 227 VPS-VSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDA-------RKYLRHYNWKYLVVDEGHRLKNPK-- 296 (725)
Q Consensus 227 ~p~-~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~-------~~~l~~~~~~~vIvDEaH~ikn~~-- 296 (725)
++. +.+..++|............ ...+|+|+||+.+.+.+ ...+....|++|||||||++.+..
T Consensus 81 ~~~~~~v~~~~g~~~~~~~~~~~~------~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~ 154 (699)
T 4gl2_A 81 LKKWYRVIGLSGDTQLKISFPEVV------KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVY 154 (699)
T ss_dssp HTTTSCEEEEC----CCCCHHHHH------HSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSS
T ss_pred cCcCceEEEEeCCcchhhHHHhhh------cCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchH
Confidence 987 88999998764332111110 35789999999998654 123445578999999999985422
Q ss_pred -hHHHHHHhc--------------CCCCcEEEEeccCCCCCh-------HHhhhhhccccCC-CCC---CHHHHHHHhcc
Q 004880 297 -CKLLKELKY--------------IPIGNKLLLTGTPLQNNL-------AELWSLLHFILPD-IFS---SLEEFQSWFDL 350 (725)
Q Consensus 297 -s~~~~~l~~--------------l~~~~rllLTgTP~~n~~-------~el~sll~~l~p~-~~~---~~~~F~~~~~~ 350 (725)
......+.. .+..++++|||||..++. .++..++..+.+. +.. ....+...+..
T Consensus 155 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~ 234 (699)
T 4gl2_A 155 NNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQE 234 (699)
T ss_dssp CSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCC
T ss_pred HHHHHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCC
Confidence 111111211 155678999999998743 3344444455542 211 11233333222
Q ss_pred cCCCchhhhHHHHHHHHHHHHHHHHHHhhhhhhhheehhhHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHh
Q 004880 351 SGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREK 430 (725)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~ 430 (725)
+.......... .. ......+..+...+..++ .+.+.. .+.. ..|...+.........
T Consensus 235 p~~~~~~~~~~-~~-~~~~~~l~~l~~~i~~~~----------~~~~~~------~~g~---~~~~~~~~~~~~~~~~-- 291 (699)
T 4gl2_A 235 PCKKFAIADAT-RE-DPFKEKLLEIMTRIQTYC----------QMSPMS------DFGT---QPYEQWAIQMEKKAAK-- 291 (699)
T ss_dssp CEEEEEEEC-------CHHHHHHHHHHHHHHHH----------TCCCCS------CSSS---HHHHHHHHHHHHHHHH--
T ss_pred CceEEEEcccc-cC-ChHHHHHHHHHHHHHHHh----------ccCcch------hccc---hHHHHHHHHHHHHHHH--
Confidence 11000000000 00 000001111111111110 010000 0000 1111111100000000
Q ss_pred hhhcCCcch---hH---------------HHHHHHHHHHhcCChhhhhhh-----ccCCCCCCchHHHH-----------
Q 004880 431 VFSAGRGMK---GK---------------LNNLMVQLRKNCNHPDLLESA-----FSDSCFYPPVEQIV----------- 476 (725)
Q Consensus 431 ~~~~~~~~~---~~---------------l~~~l~~Lr~~~~hp~l~~~~-----~~~~~~~~~~~~l~----------- 476 (725)
....... .. ....+..++..+......... ..........+...
T Consensus 292 --~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 369 (699)
T 4gl2_A 292 --EGNRKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKML 369 (699)
T ss_dssp --HTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHH
T ss_pred --hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHH
Confidence 0000000 00 000000111100000000000 00000000000000
Q ss_pred --------HhhcHHHHHHHHHHHHhhC---CCcEEEEccchhHHHHHHHHHhhc------CceEEEEeCC--------CC
Q 004880 477 --------EQCGKFRLLDRLLARLFAR---NHKVLVFSQWTKILDIMEYYFNEK------GYEVCRIDGS--------VR 531 (725)
Q Consensus 477 --------~~s~K~~~L~~ll~~l~~~---~~kvlIFsq~~~~ld~l~~~L~~~------g~~~~~l~G~--------~~ 531 (725)
..++|+..|.++|...... +.++||||+++.+++.|..+|... |+++..+||+ ++
T Consensus 370 ~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~ 449 (699)
T 4gl2_A 370 KRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMT 449 (699)
T ss_dssp HHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCC
T ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCC
Confidence 0346777777777765443 799999999999999999999987 9999999999 99
Q ss_pred HHHHHHHHHHHhCCCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCCCceEEEEEecCCCHH
Q 004880 532 LDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVE 611 (725)
Q Consensus 532 ~~~R~~~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TiE 611 (725)
..+|.+++++|+++ .+. +|++|+++|+|||++.+++||+||+||||..+.||+||++|.| ..++.+...++.+
T Consensus 450 ~~eR~~~~~~F~~g--~~~-VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~~~~~~~ 522 (699)
T 4gl2_A 450 QNEQKEVISKFRTG--KIN-LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE----STYVLVAHSGSGV 522 (699)
T ss_dssp HHHHHHHHHHHCC-----C-CSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS----CEEEEEEESSSCS
T ss_pred HHHHHHHHHHHhcC--CCc-EEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC----ceEEEEEeCCchH
Confidence 99999999999973 444 4899999999999999999999999999999999999976655 4555566667655
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 004880 612 GRILKRAFSKLKLEHVVIG 630 (725)
Q Consensus 612 e~i~~~~~~K~~l~~~vi~ 630 (725)
.........+..+....+.
T Consensus 523 ~~~~~~~~~~~~~~~~~~~ 541 (699)
T 4gl2_A 523 IERETVNDFREKMMYKAIH 541 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5444444445555555554
No 16
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=5.8e-35 Score=337.26 Aligned_cols=354 Identities=15% Similarity=0.173 Sum_probs=219.6
Q ss_pred cCCcccchHHHHHHHHHHHhcCC-CCeEEEcCCCCcHHHHHHHHHHHHHhCC-------CCCCcEEEEc-CccHHHHH-H
Q 004880 152 TGGKLKSYQLKGVKWLISLWQNG-LNGILADQMGLGKTIQTIAFLAHLKGNG-------LHGPYLVIAP-LSTLSNWV-N 221 (725)
Q Consensus 152 ~~~~Lr~yQ~~gv~~l~~~~~~~-~~~ILademGlGKT~qaiali~~l~~~~-------~~~~~LIV~P-~sll~~W~-~ 221 (725)
.+..|+|||.+++++++..+.++ .+++|+++||+|||++++.++..+...+ ..+++||||| ..++.||. +
T Consensus 175 ~~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~ 254 (590)
T 3h1t_A 175 SGYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDK 254 (590)
T ss_dssp ----CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHH
Confidence 45689999999999999877766 4589999999999999999999888776 6789999999 66889999 8
Q ss_pred HHHHhCCCceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHH-----HhhhhcCccEEEEccccccCCcc
Q 004880 222 EISRFVPSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDAR-----KYLRHYNWKYLVVDEGHRLKNPK 296 (725)
Q Consensus 222 E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~-----~~l~~~~~~~vIvDEaH~ikn~~ 296 (725)
+|..|.+.. ..+.+.. .....+|+|+||+.+..... ..+....|++|||||||++.+..
T Consensus 255 ~~~~~~~~~--~~~~~~~--------------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~ 318 (590)
T 3h1t_A 255 TFTPFGDAR--HKIEGGK--------------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD 318 (590)
T ss_dssp CCTTTCSSE--EECCC----------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC------
T ss_pred HHHhcchhh--hhhhccC--------------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc
Confidence 888876532 2222211 22467999999999876532 12333458999999999998653
Q ss_pred -hHHHHHHhcCCCCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHHHH
Q 004880 297 -CKLLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKL 375 (725)
Q Consensus 297 -s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 375 (725)
+.....+..++..++++|||||..+...+++.++.- ..+. ..+.
T Consensus 319 ~~~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~~---~~~~--~~~~------------------------------ 363 (590)
T 3h1t_A 319 NSNWREILEYFEPAFQIGMTATPLREDNRDTYRYFGN---PIYT--YSLR------------------------------ 363 (590)
T ss_dssp ---CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHSCS---CSEE--ECHH------------------------------
T ss_pred hHHHHHHHHhCCcceEEEeccccccccchhHHHHcCC---ceEe--cCHH------------------------------
Confidence 444555667777889999999998877666554421 1100 0000
Q ss_pred HHhhhhhhhheehhhHh-hcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcC
Q 004880 376 HAILRPFLLRRMKSDVE-QMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCN 454 (725)
Q Consensus 376 ~~~l~p~~lRR~k~dv~-~~lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~~~~ 454 (725)
..+. ..+++.....+.................... ......
T Consensus 364 -------------~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------------------------ 405 (590)
T 3h1t_A 364 -------------QGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFG-REIPDG------------------------ 405 (590)
T ss_dssp -------------HHHHHTSSCCEEEEEEEETTCC---------------------------------------------
T ss_pred -------------HHhhCCccCCcEEEEeeeeeeccccccccccccccc-cccccc------------------------
Confidence 0000 1133333333333222111110000000000 000000
Q ss_pred ChhhhhhhccCCCCCCchHHHHHhhcHHHHHHHHHHHHh---hCCCcEEEEccchhHHHHHHHHHhhcCce--------E
Q 004880 455 HPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLF---ARNHKVLVFSQWTKILDIMEYYFNEKGYE--------V 523 (725)
Q Consensus 455 hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~---~~~~kvlIFsq~~~~ld~l~~~L~~~g~~--------~ 523 (725)
..........+....+...+.+.+..+. ..+.|+||||++...++.+...|...+.. +
T Consensus 406 -----------~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~ 474 (590)
T 3h1t_A 406 -----------EYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYV 474 (590)
T ss_dssp --------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSE
T ss_pred -----------cCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeE
Confidence 0000111122222233333333332222 45689999999999999999999876543 7
Q ss_pred EEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCC---CCceE
Q 004880 524 CRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQ---TKPVH 600 (725)
Q Consensus 524 ~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ---~k~V~ 600 (725)
..++|+++. +|++++++|++++....++|+||+++++|||++.+++||+|+++||+..+.|++||++|.|+ +..+.
T Consensus 475 ~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~ 553 (590)
T 3h1t_A 475 ARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFN 553 (590)
T ss_dssp EECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEE
T ss_pred EEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEE
Confidence 889999873 79999999998766778899999999999999999999999999999999999999999995 45589
Q ss_pred EEEEec
Q 004880 601 VYRLAT 606 (725)
Q Consensus 601 Vyrli~ 606 (725)
||.++.
T Consensus 554 I~D~~g 559 (590)
T 3h1t_A 554 IIDYTG 559 (590)
T ss_dssp EEECSS
T ss_pred EEecCC
Confidence 999873
No 17
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=8.3e-33 Score=302.39 Aligned_cols=329 Identities=17% Similarity=0.208 Sum_probs=226.7
Q ss_pred CcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhC-CCCCCcEEEEcC-ccHHHHHHHHHHhC---C
Q 004880 154 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGN-GLHGPYLVIAPL-STLSNWVNEISRFV---P 228 (725)
Q Consensus 154 ~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~-~~~~~~LIV~P~-sll~~W~~E~~~~~---p 228 (725)
..|+|||.+++.+++. +.+++++++||+|||++++..+...... ....++|||||. .++.||.+++.++. |
T Consensus 29 ~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 104 (391)
T 1xti_A 29 EHPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMP 104 (391)
T ss_dssp CSCCHHHHHHHHHHTT----TCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCT
T ss_pred CCCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCC
Confidence 4699999999998875 7889999999999999987666555443 334589999997 57889999999985 5
Q ss_pred CceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEccccccCCcc---hHHHHHHh
Q 004880 229 SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNPK---CKLLKELK 304 (725)
Q Consensus 229 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~-~l~~~~~~~vIvDEaH~ikn~~---s~~~~~l~ 304 (725)
++.+..++|............ ....+|+|+||+.+...... .+...++++||+||||++.+.. ..+...+.
T Consensus 105 ~~~~~~~~g~~~~~~~~~~~~-----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~ 179 (391)
T 1xti_A 105 NVKVAVFFGGLSIKKDEEVLK-----KNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFR 179 (391)
T ss_dssp TCCEEEECTTSCHHHHHHHHH-----HSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCHHHHHHHHh-----cCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHh
Confidence 788888888765433221111 13468999999998876532 1233468999999999997632 12223333
Q ss_pred cCC-CCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 004880 305 YIP-IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFL 383 (725)
Q Consensus 305 ~l~-~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~ 383 (725)
..+ ....+++||||-... .++.. .++. .|..
T Consensus 180 ~~~~~~~~i~~SAT~~~~~-~~~~~-----------------~~~~------------------------------~~~~ 211 (391)
T 1xti_A 180 MTPHEKQVMMFSATLSKEI-RPVCR-----------------KFMQ------------------------------DPME 211 (391)
T ss_dssp TSCSSSEEEEEESSCCSTH-HHHHH-----------------HHCS------------------------------SCEE
T ss_pred hCCCCceEEEEEeeCCHHH-HHHHH-----------------HHcC------------------------------CCeE
Confidence 333 556799999984321 11100 0000 0000
Q ss_pred hheehhhHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhc
Q 004880 384 LRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAF 463 (725)
Q Consensus 384 lRR~k~dv~~~lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~~~~hp~l~~~~~ 463 (725)
+... .......+......+.+
T Consensus 212 ~~~~-~~~~~~~~~~~~~~~~~---------------------------------------------------------- 232 (391)
T 1xti_A 212 IFVD-DETKLTLHGLQQYYVKL---------------------------------------------------------- 232 (391)
T ss_dssp EECC-CCCCCCCTTCEEEEEEC----------------------------------------------------------
T ss_pred EEec-CccccCcccceEEEEEc----------------------------------------------------------
Confidence 0000 00000000111111110
Q ss_pred cCCCCCCchHHHHHhhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHh
Q 004880 464 SDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFN 543 (725)
Q Consensus 464 ~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~ 543 (725)
....|...+.+++... .++++||||++...++.+..+|...|+.+..+||+++..+|.++++.|+
T Consensus 233 -------------~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 297 (391)
T 1xti_A 233 -------------KDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFK 297 (391)
T ss_dssp -------------CGGGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred -------------CchhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHh
Confidence 0123555566666553 6789999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCCCceEEEEEecCCCHHHHHHHHHH
Q 004880 544 DVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAF 619 (725)
Q Consensus 544 ~~~~~~~v~Llst~agg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TiEe~i~~~~~ 619 (725)
++ ... +|++|+++++|+|++.+++||+||+|||+..+.|++||++|.|+...+. .|++... +..+++...
T Consensus 298 ~~--~~~-vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~--~~~~~~~-~~~~~~~~~ 367 (391)
T 1xti_A 298 DF--QRR-ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAI--TFVSDEN-DAKILNDVQ 367 (391)
T ss_dssp TT--CCS-EEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEE--EEECSHH-HHHHHHHHH
T ss_pred cC--CCc-EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEE--EEEcccc-hHHHHHHHH
Confidence 74 333 5999999999999999999999999999999999999999999766544 4444432 444444443
No 18
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.1e-32 Score=298.24 Aligned_cols=312 Identities=19% Similarity=0.245 Sum_probs=224.0
Q ss_pred CcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCc-cHHHHHHHHHHhCC--Cc
Q 004880 154 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVP--SV 230 (725)
Q Consensus 154 ~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p--~~ 230 (725)
.+|+|||.+++.+++. .+.+++++++||+|||++++..+..+...+...++|||||.. +..||.+++.++++ ..
T Consensus 27 ~~~~~~Q~~~i~~~~~---~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 103 (367)
T 1hv8_A 27 EKPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNL 103 (367)
T ss_dssp CSCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCc
Confidence 4799999999999875 236889999999999999887777766655567899999975 67999999999865 45
Q ss_pred eEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEccccccCCcc--hHHHHHHhcC-
Q 004880 231 SAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNPK--CKLLKELKYI- 306 (725)
Q Consensus 231 ~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~-~l~~~~~~~vIvDEaH~ikn~~--s~~~~~l~~l- 306 (725)
.+..++|........... ...+|+|+||+.+...... .+...+|++||+||||++.+.. ..+...+..+
T Consensus 104 ~v~~~~~~~~~~~~~~~~-------~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~ 176 (367)
T 1hv8_A 104 KIAKIYGGKAIYPQIKAL-------KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACN 176 (367)
T ss_dssp CEEEECTTSCHHHHHHHH-------HTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSC
T ss_pred eEEEEECCcchHHHHhhc-------CCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCC
Confidence 677777766544333222 2568999999998776532 1223468999999999987644 3344445555
Q ss_pred CCCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhe
Q 004880 307 PIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRR 386 (725)
Q Consensus 307 ~~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR 386 (725)
+..+.+++||||-.+....+ ..+ +..+..
T Consensus 177 ~~~~~i~~SAT~~~~~~~~~------------------~~~-------------------------------~~~~~~-- 205 (367)
T 1hv8_A 177 KDKRILLFSATMPREILNLA------------------KKY-------------------------------MGDYSF-- 205 (367)
T ss_dssp SSCEEEEECSSCCHHHHHHH------------------HHH-------------------------------CCSEEE--
T ss_pred CCceEEEEeeccCHHHHHHH------------------HHH-------------------------------cCCCeE--
Confidence 45567999999832111000 000 000000
Q ss_pred ehhhHhhcCCCceE-EEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccC
Q 004880 387 MKSDVEQMLPRKKE-IILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSD 465 (725)
Q Consensus 387 ~k~dv~~~lP~k~e-~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~~~~hp~l~~~~~~~ 465 (725)
+....+.... ..+.+ .
T Consensus 206 ----~~~~~~~~~~~~~~~~--~--------------------------------------------------------- 222 (367)
T 1hv8_A 206 ----IKAKINANIEQSYVEV--N--------------------------------------------------------- 222 (367)
T ss_dssp ----EECCSSSSSEEEEEEC--C---------------------------------------------------------
T ss_pred ----EEecCCCCceEEEEEe--C---------------------------------------------------------
Confidence 0000000000 11110 0
Q ss_pred CCCCCchHHHHHhhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCC
Q 004880 466 SCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDV 545 (725)
Q Consensus 466 ~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~ 545 (725)
...|+..+.+++. ..+.++||||++...++.+...|...|+.+..++|+++..+|.++++.|+++
T Consensus 223 ------------~~~~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 287 (367)
T 1hv8_A 223 ------------ENERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQK 287 (367)
T ss_dssp ------------GGGHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTT
T ss_pred ------------hHHHHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcC
Confidence 1224444444443 5678999999999999999999999999999999999999999999999974
Q ss_pred CCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCCCceEEEEEecCCC
Q 004880 546 NSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQS 609 (725)
Q Consensus 546 ~~~~~v~Llst~agg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~T 609 (725)
... +|++|+++++|+|++.+++||+||+|||+..+.||+||++|.|+...+ +.+++...
T Consensus 288 --~~~-vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~~ 346 (367)
T 1hv8_A 288 --KIR-ILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKA--ISIINRRE 346 (367)
T ss_dssp --SSS-EEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEE--EEEECTTS
T ss_pred --CCe-EEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEE--EEEEcHHH
Confidence 344 599999999999999999999999999999999999999999977654 44555553
No 19
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=8.8e-32 Score=295.41 Aligned_cols=316 Identities=17% Similarity=0.257 Sum_probs=223.5
Q ss_pred CcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhC-CCCCCcEEEEcCc-cHHHHHHHHHHhCC--C
Q 004880 154 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGN-GLHGPYLVIAPLS-TLSNWVNEISRFVP--S 229 (725)
Q Consensus 154 ~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~-~~~~~~LIV~P~s-ll~~W~~E~~~~~p--~ 229 (725)
..|+|||.+++.+++. +.++++..+||+|||++++..+...... ....++|||||.. +..||.+++.++++ +
T Consensus 42 ~~~~~~Q~~~i~~i~~----~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 117 (400)
T 1s2m_A 42 EKPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCG 117 (400)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccC
Confidence 4799999999999986 7889999999999999877666554433 2445899999975 77899999999976 4
Q ss_pred ceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHh-hhhcCccEEEEccccccCCcc-hHHHH-HHhcC
Q 004880 230 VSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKY-LRHYNWKYLVVDEGHRLKNPK-CKLLK-ELKYI 306 (725)
Q Consensus 230 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~-l~~~~~~~vIvDEaH~ikn~~-s~~~~-~l~~l 306 (725)
..+..++|........... ....+|+|+||+.+....... +...++++||+||||++.+.. ..... .+..+
T Consensus 118 ~~~~~~~g~~~~~~~~~~~------~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~ 191 (400)
T 1s2m_A 118 ISCMVTTGGTNLRDDILRL------NETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFL 191 (400)
T ss_dssp CCEEEECSSSCHHHHHHHT------TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTS
T ss_pred ceEEEEeCCcchHHHHHHh------cCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhC
Confidence 6777787776555443322 246789999999987665322 233458999999999987643 22223 33333
Q ss_pred C-CCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 004880 307 P-IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLR 385 (725)
Q Consensus 307 ~-~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lR 385 (725)
+ ....+++|||+-.. +.++ +..++ ..|+.+.
T Consensus 192 ~~~~~~i~lSAT~~~~-~~~~-----------------~~~~~------------------------------~~~~~~~ 223 (400)
T 1s2m_A 192 PPTHQSLLFSATFPLT-VKEF-----------------MVKHL------------------------------HKPYEIN 223 (400)
T ss_dssp CSSCEEEEEESCCCHH-HHHH-----------------HHHHC------------------------------SSCEEES
T ss_pred CcCceEEEEEecCCHH-HHHH-----------------HHHHc------------------------------CCCeEEE
Confidence 3 45679999996211 0000 00000 0011000
Q ss_pred eehhhHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccC
Q 004880 386 RMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSD 465 (725)
Q Consensus 386 R~k~dv~~~lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~~~~hp~l~~~~~~~ 465 (725)
... . ...+........+
T Consensus 224 ~~~-~--~~~~~~~~~~~~~------------------------------------------------------------ 240 (400)
T 1s2m_A 224 LME-E--LTLKGITQYYAFV------------------------------------------------------------ 240 (400)
T ss_dssp CCS-S--CBCTTEEEEEEEC------------------------------------------------------------
T ss_pred ecc-c--cccCCceeEEEEe------------------------------------------------------------
Confidence 000 0 0011111111111
Q ss_pred CCCCCchHHHHHhhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCC
Q 004880 466 SCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDV 545 (725)
Q Consensus 466 ~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~ 545 (725)
....|+..+..++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|+++
T Consensus 241 -----------~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 307 (400)
T 1s2m_A 241 -----------EERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQG 307 (400)
T ss_dssp -----------CGGGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred -----------chhhHHHHHHHHHhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcC
Confidence 0123555566666543 567999999999999999999999999999999999999999999999974
Q ss_pred CCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCCCceEEEEEecCC
Q 004880 546 NSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQ 608 (725)
Q Consensus 546 ~~~~~v~Llst~agg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~ 608 (725)
... +|++|+++++|||++.+++||+||+|||+..+.||+||++|.|+.. .+|.|++.+
T Consensus 308 --~~~-vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~l~~~~ 365 (400)
T 1s2m_A 308 --KVR-TLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLG--LAINLINWN 365 (400)
T ss_dssp --SSS-EEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCE--EEEEEECGG
T ss_pred --CCc-EEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCc--eEEEEeccc
Confidence 344 5999999999999999999999999999999999999999999764 455566665
No 20
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2e-31 Score=293.65 Aligned_cols=319 Identities=20% Similarity=0.258 Sum_probs=224.7
Q ss_pred CcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHh-CCCCCCcEEEEcCc-cHHHHHHHHHHhCC--C
Q 004880 154 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG-NGLHGPYLVIAPLS-TLSNWVNEISRFVP--S 229 (725)
Q Consensus 154 ~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~-~~~~~~~LIV~P~s-ll~~W~~E~~~~~p--~ 229 (725)
.+|+|||.+++.+++. +.++|++++||+|||++++..+..... .....++|||||.. +..||.+++.++.+ +
T Consensus 58 ~~~~~~Q~~ai~~i~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 133 (410)
T 2j0s_A 58 EKPSAIQQRAIKQIIK----GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMN 133 (410)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCC
Confidence 4699999999999875 788999999999999988766555443 33457899999976 77899999999874 3
Q ss_pred ceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEccccccCCcc--hHHHHHHhcC
Q 004880 230 VSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNPK--CKLLKELKYI 306 (725)
Q Consensus 230 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~-~l~~~~~~~vIvDEaH~ikn~~--s~~~~~l~~l 306 (725)
+.+..+.|............ ...+|+|+||+.+...+.. .+....+++||+||||++.+.. ..+...+..+
T Consensus 134 ~~~~~~~g~~~~~~~~~~~~------~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~ 207 (410)
T 2j0s_A 134 VQCHACIGGTNVGEDIRKLD------YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL 207 (410)
T ss_dssp CCEEEECTTSCHHHHHHHHH------HCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTS
T ss_pred eEEEEEECCCCHHHHHHHhh------cCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhC
Confidence 56666777654443332221 2458999999998766532 2334468999999999987644 3344445555
Q ss_pred C-CCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 004880 307 P-IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLR 385 (725)
Q Consensus 307 ~-~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lR 385 (725)
+ ....+++||||-. ++..++.....+ |..+.
T Consensus 208 ~~~~~~i~~SAT~~~----~~~~~~~~~~~~--------------------------------------------~~~~~ 239 (410)
T 2j0s_A 208 PPATQVVLISATLPH----EILEMTNKFMTD--------------------------------------------PIRIL 239 (410)
T ss_dssp CTTCEEEEEESCCCH----HHHTTGGGTCSS--------------------------------------------CEEEC
T ss_pred ccCceEEEEEcCCCH----HHHHHHHHHcCC--------------------------------------------CEEEE
Confidence 3 4567999999832 222211111000 00000
Q ss_pred eehhhHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccC
Q 004880 386 RMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSD 465 (725)
Q Consensus 386 R~k~dv~~~lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~~~~hp~l~~~~~~~ 465 (725)
. .......+......+.+.-.
T Consensus 240 ~--~~~~~~~~~~~~~~~~~~~~--------------------------------------------------------- 260 (410)
T 2j0s_A 240 V--KRDELTLEGIKQFFVAVERE--------------------------------------------------------- 260 (410)
T ss_dssp C--CGGGCSCTTEEEEEEEESST---------------------------------------------------------
T ss_pred e--cCccccCCCceEEEEEeCcH---------------------------------------------------------
Confidence 0 00000111112222222110
Q ss_pred CCCCCchHHHHHhhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCC
Q 004880 466 SCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDV 545 (725)
Q Consensus 466 ~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~ 545 (725)
..|+..+.+++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|+++
T Consensus 261 -------------~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 325 (410)
T 2j0s_A 261 -------------EWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSG 325 (410)
T ss_dssp -------------THHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHT
T ss_pred -------------HhHHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCC
Confidence 11444555555543 356899999999999999999999999999999999999999999999974
Q ss_pred CCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCCCceEEEEEecCCC
Q 004880 546 NSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQS 609 (725)
Q Consensus 546 ~~~~~v~Llst~agg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~T 609 (725)
..+ +|++|+++++|||++.+++||+||+|||+..+.||+||++|.|+.. .++.|++...
T Consensus 326 --~~~-vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~~ 384 (410)
T 2j0s_A 326 --ASR-VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKG--VAINFVKNDD 384 (410)
T ss_dssp --SSC-EEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCE--EEEEEEEGGG
T ss_pred --CCC-EEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCce--EEEEEecHHH
Confidence 333 5899999999999999999999999999999999999999999765 4555666553
No 21
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.3e-32 Score=290.23 Aligned_cols=314 Identities=16% Similarity=0.174 Sum_probs=216.1
Q ss_pred CCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCc-cHHHHHHHHHHhCC--C
Q 004880 153 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVP--S 229 (725)
Q Consensus 153 ~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p--~ 229 (725)
...|+|||.+++.++.. +.++++.++||+|||++++..+... ..++|||||.. ++.||.+++.++.+ +
T Consensus 14 ~~~l~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~-----~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 84 (337)
T 2z0m_A 14 FKNFTEVQSKTIPLMLQ----GKNVVVRAKTGSGKTAAYAIPILEL-----GMKSLVVTPTRELTRQVASHIRDIGRYMD 84 (337)
T ss_dssp CCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHH-----TCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCCHHHHHHHHHHhc----CCCEEEEcCCCCcHHHHHHHHHHhh-----cCCEEEEeCCHHHHHHHHHHHHHHhhhcC
Confidence 34799999999999875 7899999999999999877665542 46899999975 77999999999865 4
Q ss_pred ceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEccccccCCcc--hHHHHHHhcC
Q 004880 230 VSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNPK--CKLLKELKYI 306 (725)
Q Consensus 230 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~-~l~~~~~~~vIvDEaH~ikn~~--s~~~~~l~~l 306 (725)
..+..++|........... ...+|+|+||+.+.+.... .+...+|++||+||||++.+.. ..+...+..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~-------~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~ 157 (337)
T 2z0m_A 85 TKVAEVYGGMPYKAQINRV-------RNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQT 157 (337)
T ss_dssp CCEEEECTTSCHHHHHHHH-------TTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHC
T ss_pred CcEEEEECCcchHHHHhhc-------CCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhhC
Confidence 6777777766544433222 2478999999998876532 2234468999999999986432 3344445555
Q ss_pred CCCc-EEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 004880 307 PIGN-KLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLR 385 (725)
Q Consensus 307 ~~~~-rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lR 385 (725)
+... .+++||||-......+ ..++... ..+.
T Consensus 158 ~~~~~~~~~SAT~~~~~~~~~------------------~~~~~~~------------------------------~~~~ 189 (337)
T 2z0m_A 158 SNRKITGLFSATIPEEIRKVV------------------KDFITNY------------------------------EEIE 189 (337)
T ss_dssp TTCSEEEEEESCCCHHHHHHH------------------HHHSCSC------------------------------EEEE
T ss_pred CcccEEEEEeCcCCHHHHHHH------------------HHhcCCc------------------------------eeee
Confidence 5444 4678999832110000 0000000 0000
Q ss_pred eehhhHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccC
Q 004880 386 RMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSD 465 (725)
Q Consensus 386 R~k~dv~~~lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~~~~hp~l~~~~~~~ 465 (725)
.. ...+......+.+.... +
T Consensus 190 ---~~--~~~~~~~~~~~~~~~~~--~----------------------------------------------------- 209 (337)
T 2z0m_A 190 ---AC--IGLANVEHKFVHVKDDW--R----------------------------------------------------- 209 (337)
T ss_dssp ---CS--GGGGGEEEEEEECSSSS--H-----------------------------------------------------
T ss_pred ---cc--cccCCceEEEEEeChHH--H-----------------------------------------------------
Confidence 00 00111111111111100 0
Q ss_pred CCCCCchHHHHHhhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCC
Q 004880 466 SCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDV 545 (725)
Q Consensus 466 ~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~ 545 (725)
.....+. ...+.++||||++...++.+...|. .+..++|+++..+|.+++++|+++
T Consensus 210 ------------------~~~~~~~--~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~ 265 (337)
T 2z0m_A 210 ------------------SKVQALR--ENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREG 265 (337)
T ss_dssp ------------------HHHHHHH--TCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTT
T ss_pred ------------------HHHHHHH--hCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcC
Confidence 0001111 1357899999999999999998887 578899999999999999999974
Q ss_pred CCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCCCceEEEEEecCCCHHHHHHHHH
Q 004880 546 NSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRA 618 (725)
Q Consensus 546 ~~~~~v~Llst~agg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TiEe~i~~~~ 618 (725)
... +|++|+++++|+|++.+++||+||+|||+..+.|++||++|.|+...+.+|.. ...++.+.|.+..
T Consensus 266 --~~~-vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 266 --EYD-MLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp --SCS-EEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC---
T ss_pred --CCc-EEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHh
Confidence 333 59999999999999999999999999999999999999999999888888776 5555666655444
No 22
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.97 E-value=2.8e-30 Score=286.59 Aligned_cols=316 Identities=17% Similarity=0.232 Sum_probs=219.6
Q ss_pred CCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHH-HHHHHHhCC-----CCCCcEEEEcCc-cHHHHHHHHHH
Q 004880 153 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIA-FLAHLKGNG-----LHGPYLVIAPLS-TLSNWVNEISR 225 (725)
Q Consensus 153 ~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaia-li~~l~~~~-----~~~~~LIV~P~s-ll~~W~~E~~~ 225 (725)
..+++|+|..++..++. +.++|++.+||+|||++.+. ++..+...+ ....+|||||.. +..||.+++.+
T Consensus 76 ~~~pt~iQ~~ai~~i~~----g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 151 (434)
T 2db3_A 76 YKIPTPIQKCSIPVISS----GRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARK 151 (434)
T ss_dssp CCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhc----CCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHH
Confidence 34799999999998875 88999999999999998654 445555432 235799999976 77899999999
Q ss_pred hCC--CceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEccccccCCcc--hHHH
Q 004880 226 FVP--SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNPK--CKLL 300 (725)
Q Consensus 226 ~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~-~l~~~~~~~vIvDEaH~ikn~~--s~~~ 300 (725)
+.. .+.+.+++|........... ....+|+|+|++.+...+.. .+...++++||+||||++.+.+ ..+.
T Consensus 152 ~~~~~~~~~~~~~gg~~~~~~~~~l------~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~ 225 (434)
T 2db3_A 152 FAFESYLKIGIVYGGTSFRHQNECI------TRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMR 225 (434)
T ss_dssp HTTTSSCCCCEECTTSCHHHHHHHH------TTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHH
T ss_pred HhccCCcEEEEEECCCCHHHHHHHh------hcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHH
Confidence 974 35666666665444332221 13679999999999776532 2233467899999999987543 3344
Q ss_pred HHHhcC---CCCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHHHHHH
Q 004880 301 KELKYI---PIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHA 377 (725)
Q Consensus 301 ~~l~~l---~~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 377 (725)
+.+..+ .....+++|||+- .++..+..-.
T Consensus 226 ~i~~~~~~~~~~q~l~~SAT~~----~~~~~~~~~~-------------------------------------------- 257 (434)
T 2db3_A 226 RIMTHVTMRPEHQTLMFSATFP----EEIQRMAGEF-------------------------------------------- 257 (434)
T ss_dssp HHHHCTTSCSSCEEEEEESCCC----HHHHHHHHTT--------------------------------------------
T ss_pred HHHHhcCCCCCceEEEEeccCC----HHHHHHHHHh--------------------------------------------
Confidence 444443 3556799999972 1111111000
Q ss_pred hhhhhhhheehhhHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChh
Q 004880 378 ILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPD 457 (725)
Q Consensus 378 ~l~p~~lRR~k~dv~~~lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~~~~hp~ 457 (725)
+..+..-.. .......+......+.+.
T Consensus 258 -l~~~~~i~~-~~~~~~~~~i~~~~~~~~--------------------------------------------------- 284 (434)
T 2db3_A 258 -LKNYVFVAI-GIVGGACSDVKQTIYEVN--------------------------------------------------- 284 (434)
T ss_dssp -CSSCEEEEE-SSTTCCCTTEEEEEEECC---------------------------------------------------
T ss_pred -ccCCEEEEe-ccccccccccceEEEEeC---------------------------------------------------
Confidence 000000000 000000111111111110
Q ss_pred hhhhhccCCCCCCchHHHHHhhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHH
Q 004880 458 LLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKR 537 (725)
Q Consensus 458 l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~ 537 (725)
...|...|.+++.. .+.++||||+....++.+...|...|+++..+||+++..+|.+
T Consensus 285 --------------------~~~k~~~l~~~l~~---~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~ 341 (434)
T 2db3_A 285 --------------------KYAKRSKLIEILSE---QADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQ 341 (434)
T ss_dssp --------------------GGGHHHHHHHHHHH---CCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHH
T ss_pred --------------------cHHHHHHHHHHHHh---CCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHH
Confidence 12344555555553 3456999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCCCceEEEEEecC
Q 004880 538 QIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATA 607 (725)
Q Consensus 538 ~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~ 607 (725)
++++|+++ ... +|++|+++++|||++.+++||+||+||++..|.||+||++|.|++..+ +.|++.
T Consensus 342 ~l~~F~~g--~~~-vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a--~~~~~~ 406 (434)
T 2db3_A 342 ALRDFKNG--SMK-VLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRA--TSFFDP 406 (434)
T ss_dssp HHHHHHTS--SCS-EEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEE--EEEECT
T ss_pred HHHHHHcC--CCc-EEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEE--EEEEec
Confidence 99999974 333 599999999999999999999999999999999999999999976544 445553
No 23
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.97 E-value=7.2e-31 Score=289.30 Aligned_cols=320 Identities=18% Similarity=0.210 Sum_probs=212.4
Q ss_pred CCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHh-CCCCCCcEEEEcCc-cHHHHHHHHHHhCC--
Q 004880 153 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG-NGLHGPYLVIAPLS-TLSNWVNEISRFVP-- 228 (725)
Q Consensus 153 ~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~-~~~~~~~LIV~P~s-ll~~W~~E~~~~~p-- 228 (725)
...++|||.+++.+++. +.++|++.+||+|||++++..+..... ....+++|||||.. +..||.+++.++..
T Consensus 60 ~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 135 (414)
T 3eiq_A 60 FEKPSAIQQRAILPCIK----GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM 135 (414)
T ss_dssp CCSCCHHHHHHHHHHHT----TCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGS
T ss_pred CCCCCHHHHHHhHHHhC----CCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhccc
Confidence 45799999999988875 788999999999999997665554443 33556899999976 77899999999863
Q ss_pred CceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEccccccCCc--chHHHHHHhc
Q 004880 229 SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNP--KCKLLKELKY 305 (725)
Q Consensus 229 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~-~l~~~~~~~vIvDEaH~ikn~--~s~~~~~l~~ 305 (725)
+..+....|............ ....+|+|+|++.+...+.. .+....+++||+||||++.+. ...+...+..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~ 210 (414)
T 3eiq_A 136 GASCHACIGGTNVRAEVQKLQ-----MEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 210 (414)
T ss_dssp CCCEEECCCCTTHHHHHHHHT-----TTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTT
T ss_pred CceEEEEECCcchHHHHHHHh-----cCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHHh
Confidence 456666666655444433322 14678999999998776533 233445899999999998543 3455566666
Q ss_pred CC-CCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Q 004880 306 IP-IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLL 384 (725)
Q Consensus 306 l~-~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~l 384 (725)
++ ....+++||||-.+ +..++.....+ |..+
T Consensus 211 ~~~~~~~i~~SAT~~~~----~~~~~~~~~~~--------------------------------------------~~~~ 242 (414)
T 3eiq_A 211 LNSNTQVVLLSATMPSD----VLEVTKKFMRD--------------------------------------------PIRI 242 (414)
T ss_dssp SCTTCEEEEECSCCCHH----HHHHHTTTCSS--------------------------------------------CEEE
T ss_pred CCCCCeEEEEEEecCHH----HHHHHHHHcCC--------------------------------------------CEEE
Confidence 64 45679999998321 11111000000 0000
Q ss_pred heehhhHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhcc
Q 004880 385 RRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFS 464 (725)
Q Consensus 385 RR~k~dv~~~lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~~~~hp~l~~~~~~ 464 (725)
...... ...+......+.+..
T Consensus 243 ~~~~~~--~~~~~~~~~~~~~~~--------------------------------------------------------- 263 (414)
T 3eiq_A 243 LVKKEE--LTLEGIRQFYINVER--------------------------------------------------------- 263 (414)
T ss_dssp CCCCCC--CCTTSCCEEEEECSS---------------------------------------------------------
T ss_pred EecCCc--cCCCCceEEEEEeCh---------------------------------------------------------
Confidence 000000 000111111111100
Q ss_pred CCCCCCchHHHHHhhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhC
Q 004880 465 DSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFND 544 (725)
Q Consensus 465 ~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~ 544 (725)
...|+..+..++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|++
T Consensus 264 -------------~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 328 (414)
T 3eiq_A 264 -------------EEWKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRS 328 (414)
T ss_dssp -------------STTHHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSC
T ss_pred -------------HHhHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHc
Confidence 012555555555543 45789999999999999999999999999999999999999999999987
Q ss_pred CCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCCCceEEEEEecCC
Q 004880 545 VNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQ 608 (725)
Q Consensus 545 ~~~~~~v~Llst~agg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~ 608 (725)
+ ..+ +|++|+++++|||++.+++||+||+|||+..+.||+||++|.|+.. .+|.|++.+
T Consensus 329 g--~~~-vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~ 387 (414)
T 3eiq_A 329 G--SSR-VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG--VAINMVTEE 387 (414)
T ss_dssp C------CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC---------CEEEEECST
T ss_pred C--CCc-EEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCc--eEEEEEcHH
Confidence 3 344 4999999999999999999999999999999999999999999765 455667665
No 24
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.97 E-value=2.9e-30 Score=282.16 Aligned_cols=316 Identities=17% Similarity=0.218 Sum_probs=215.0
Q ss_pred CCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHH-hCCCCCCcEEEEcCc-cHHHHHHHHHHhCC--
Q 004880 153 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLK-GNGLHGPYLVIAPLS-TLSNWVNEISRFVP-- 228 (725)
Q Consensus 153 ~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~-~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p-- 228 (725)
...++|||.+++.+++. .++.++|++.+||+|||++++..+.... ..+..+++|||||.. ++.||.+++.++..
T Consensus 25 ~~~~~~~Q~~~i~~~~~--~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 102 (395)
T 3pey_A 25 FQKPSKIQERALPLLLH--NPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFT 102 (395)
T ss_dssp CCSCCHHHHHHHHHHHC--SSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhccc
Confidence 35899999999999875 2237899999999999999876655443 344556899999977 77899999999863
Q ss_pred CceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEccccccCCc---chHHHHHHh
Q 004880 229 SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNP---KCKLLKELK 304 (725)
Q Consensus 229 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~-~l~~~~~~~vIvDEaH~ikn~---~s~~~~~l~ 304 (725)
...+....+...... .....+|+|+|++.+...... .+...++++||+||||++.+. .........
T Consensus 103 ~~~~~~~~~~~~~~~----------~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~ 172 (395)
T 3pey_A 103 KITSQLIVPDSFEKN----------KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKR 172 (395)
T ss_dssp CCCEEEESTTSSCTT----------SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHH
T ss_pred CeeEEEEecCchhhh----------ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHH
Confidence 455556655442211 123678999999998776532 223346899999999998642 222333333
Q ss_pred cCC-CCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 004880 305 YIP-IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFL 383 (725)
Q Consensus 305 ~l~-~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~ 383 (725)
.++ ....+++||||-.. +.. +...+.. .+..
T Consensus 173 ~~~~~~~~i~~SAT~~~~----~~~---------------~~~~~~~-----------------------------~~~~ 204 (395)
T 3pey_A 173 FLPKDTQLVLFSATFADA----VRQ---------------YAKKIVP-----------------------------NANT 204 (395)
T ss_dssp TSCTTCEEEEEESCCCHH----HHH---------------HHHHHSC-----------------------------SCEE
T ss_pred hCCCCcEEEEEEecCCHH----HHH---------------HHHHhCC-----------------------------CCeE
Confidence 343 45679999998311 111 1111000 0000
Q ss_pred hheehhhHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhc
Q 004880 384 LRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAF 463 (725)
Q Consensus 384 lRR~k~dv~~~lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~~~~hp~l~~~~~ 463 (725)
+.-... ....+........+. ..
T Consensus 205 ~~~~~~--~~~~~~~~~~~~~~~-~~------------------------------------------------------ 227 (395)
T 3pey_A 205 LELQTN--EVNVDAIKQLYMDCK-NE------------------------------------------------------ 227 (395)
T ss_dssp ECCCGG--GCSCTTEEEEEEECS-SH------------------------------------------------------
T ss_pred EEcccc--ccccccccEEEEEcC-ch------------------------------------------------------
Confidence 000000 000111111111111 00
Q ss_pred cCCCCCCchHHHHHhhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHh
Q 004880 464 SDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFN 543 (725)
Q Consensus 464 ~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~ 543 (725)
..|...+..++.. ..+.++||||+....++.+...|...|+.+..+||+++..+|.++++.|+
T Consensus 228 ---------------~~~~~~l~~~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 290 (395)
T 3pey_A 228 ---------------ADKFDVLTELYGL--MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFR 290 (395)
T ss_dssp ---------------HHHHHHHHHHHTT--TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHh--ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHH
Confidence 1233333333332 24678999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEecccccCCCCCCCCCEEEEeCCCC------CcchhhhHhHhhHhcCCCCceEEEEEecC
Q 004880 544 DVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDW------NPQMDLQAMDRCHRIGQTKPVHVYRLATA 607 (725)
Q Consensus 544 ~~~~~~~v~Llst~agg~GiNL~~a~~VI~~D~~w------Np~~~~Qa~gR~~RiGQ~k~V~Vyrli~~ 607 (725)
++ ... +|++|+++++|||++++++||+||+|| |+..+.|++||++|.|+...+. .|+..
T Consensus 291 ~g--~~~-vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~--~~~~~ 355 (395)
T 3pey_A 291 EG--RSK-VLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAI--SFVHD 355 (395)
T ss_dssp TT--SCC-EEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEE--EEECS
T ss_pred CC--CCC-EEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEE--EEEec
Confidence 74 344 599999999999999999999999999 9999999999999999765444 44443
No 25
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.97 E-value=4.6e-32 Score=296.68 Aligned_cols=318 Identities=16% Similarity=0.196 Sum_probs=115.2
Q ss_pred CCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHH-HhCCCCCCcEEEEcCc-cHHHHHHHHHHhCC--
Q 004880 153 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLS-TLSNWVNEISRFVP-- 228 (725)
Q Consensus 153 ~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l-~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p-- 228 (725)
..+|+|||.+++.+++. +.+++++++||+|||++++..+... ......+++|||||.. +..||.+++.++++
T Consensus 41 ~~~~~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 116 (394)
T 1fuu_A 41 FEEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHM 116 (394)
T ss_dssp CCSCCHHHHHHHHHHHH----TCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 35899999999999986 7889999999999999865544443 3334456899999974 77899999999875
Q ss_pred CceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEccccccCC--cchHHHHHHhc
Q 004880 229 SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKN--PKCKLLKELKY 305 (725)
Q Consensus 229 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~-~l~~~~~~~vIvDEaH~ikn--~~s~~~~~l~~ 305 (725)
+..+..++|........... ...+|+|+||+.+...... .+...+|++||+||||++.+ ....+...+..
T Consensus 117 ~~~~~~~~g~~~~~~~~~~~-------~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~ 189 (394)
T 1fuu_A 117 DIKVHACIGGTSFVEDAEGL-------RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTL 189 (394)
T ss_dssp CCCEEEECSSCCHHHHHHHH-------HHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHH
T ss_pred CeeEEEEeCCCchHHHHhhc-------CCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHh
Confidence 46777777765543322211 1468999999998776532 23334689999999999843 33444555555
Q ss_pred CC-CCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Q 004880 306 IP-IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLL 384 (725)
Q Consensus 306 l~-~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~l 384 (725)
++ ....+++||||-.. +.. + +..+
T Consensus 190 ~~~~~~~i~~SAT~~~~----~~~---------------~----------------------------------~~~~-- 214 (394)
T 1fuu_A 190 LPPTTQVVLLSATMPND----VLE---------------V----------------------------------TTKF-- 214 (394)
T ss_dssp SCTTCEEEEECSSCCHH----HHH---------------H----------------------------------HHHH--
T ss_pred CCCCceEEEEEEecCHH----HHH---------------H----------------------------------HHHh--
Confidence 54 45689999998310 000 0 0000
Q ss_pred heehhhHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhcc
Q 004880 385 RRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFS 464 (725)
Q Consensus 385 RR~k~dv~~~lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~~~~hp~l~~~~~~ 464 (725)
+..... +.+....... ..+ ... . ..+
T Consensus 215 ----------~~~~~~--~~~~~~~~~~---~~~-----~~~-------------------~----~~~----------- 240 (394)
T 1fuu_A 215 ----------MRNPVR--ILVKKDELTL---EGI-----KQF-------------------Y----VNV----------- 240 (394)
T ss_dssp ----------CCSCEE--EEECC---------------------------------------------------------
T ss_pred ----------cCCCeE--EEecCccccC---CCc-----eEE-------------------E----EEc-----------
Confidence 000000 0000000000 000 000 0 000
Q ss_pred CCCCCCchHHHHHhhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhC
Q 004880 465 DSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFND 544 (725)
Q Consensus 465 ~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~ 544 (725)
.....|...+..++... .+.++||||++...++.+...|...|+.+..++|+++..+|.++++.|++
T Consensus 241 -----------~~~~~~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 307 (394)
T 1fuu_A 241 -----------EEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS 307 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------CchhhHHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHC
Confidence 00012445555555543 46799999999999999999999999999999999999999999999987
Q ss_pred CCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCCCceEEEEEecCC
Q 004880 545 VNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQ 608 (725)
Q Consensus 545 ~~~~~~v~Llst~agg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~ 608 (725)
+ ... +|++|+++++|+|++.+++||+||+||++..+.|++||++|.|+...+. .|++..
T Consensus 308 ~--~~~-vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~--~~~~~~ 366 (394)
T 1fuu_A 308 G--SSR-ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAI--NFVTNE 366 (394)
T ss_dssp ----------------------------------------------------------------
T ss_pred C--CCc-EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEE--EEEchh
Confidence 3 333 5899999999999999999999999999999999999999999766544 445544
No 26
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.97 E-value=1.5e-29 Score=279.11 Aligned_cols=319 Identities=18% Similarity=0.248 Sum_probs=216.9
Q ss_pred CCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHH-HHHHHHhCCC------------------CCCcEEEEcC
Q 004880 153 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIA-FLAHLKGNGL------------------HGPYLVIAPL 213 (725)
Q Consensus 153 ~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaia-li~~l~~~~~------------------~~~~LIV~P~ 213 (725)
...++|+|.+++..++. +.++|+..+||+|||++.+. ++..+...+. ...+|||+|.
T Consensus 35 ~~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 110 (417)
T 2i4i_A 35 YTRPTPVQKHAIPIIKE----KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPT 110 (417)
T ss_dssp CCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSS
T ss_pred CCCCCHHHHHHHHHHcc----CCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCc
Confidence 35899999999988764 78999999999999987554 4444443221 2468999997
Q ss_pred c-cHHHHHHHHHHhCC--CceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEccc
Q 004880 214 S-TLSNWVNEISRFVP--SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEG 289 (725)
Q Consensus 214 s-ll~~W~~E~~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~-~l~~~~~~~vIvDEa 289 (725)
. +..||.+++.++.. ++.+..++|........... ....+|+|+|++.+...+.. .+....+++||+|||
T Consensus 111 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEa 184 (417)
T 2i4i_A 111 RELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDL------ERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEA 184 (417)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHH------TTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSH
T ss_pred HHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHh------hCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEECh
Confidence 5 77899999998863 56777777776554433332 13578999999999776532 122345789999999
Q ss_pred cccCCc--chHHHHHHhcC--C---CCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHH
Q 004880 290 HRLKNP--KCKLLKELKYI--P---IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEE 362 (725)
Q Consensus 290 H~ikn~--~s~~~~~l~~l--~---~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~ 362 (725)
|++... ...+...+... . ....+++||||-.+ ..++ +. .+
T Consensus 185 h~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~-~~~~---~~---------------~~-------------- 231 (417)
T 2i4i_A 185 DRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKE-IQML---AR---------------DF-------------- 231 (417)
T ss_dssp HHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHH-HHHH---HH---------------HH--------------
T ss_pred hHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHH-HHHH---HH---------------HH--------------
Confidence 998543 23333333322 2 34579999998211 1110 00 00
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhheehhhHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHH
Q 004880 363 LEEKRRGQMVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKL 442 (725)
Q Consensus 363 ~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l 442 (725)
+......... ......+......+++.
T Consensus 232 ----------------~~~~~~~~~~-~~~~~~~~i~~~~~~~~------------------------------------ 258 (417)
T 2i4i_A 232 ----------------LDEYIFLAVG-RVGSTSENITQKVVWVE------------------------------------ 258 (417)
T ss_dssp ----------------CSSCEEEEEC-----CCSSEEEEEEECC------------------------------------
T ss_pred ----------------cCCCEEEEeC-CCCCCccCceEEEEEec------------------------------------
Confidence 0000000000 00000111111111111
Q ss_pred HHHHHHHHHhcCChhhhhhhccCCCCCCchHHHHHhhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCce
Q 004880 443 NNLMVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYE 522 (725)
Q Consensus 443 ~~~l~~Lr~~~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~ 522 (725)
...|...+.+++... ..+.++||||+....++.+..+|...|+.
T Consensus 259 -----------------------------------~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~ 302 (417)
T 2i4i_A 259 -----------------------------------ESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYA 302 (417)
T ss_dssp -----------------------------------GGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCC
T ss_pred -----------------------------------cHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCC
Confidence 122444555555542 35789999999999999999999999999
Q ss_pred EEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCCCceEEE
Q 004880 523 VCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVY 602 (725)
Q Consensus 523 ~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vy 602 (725)
+..+||+++..+|.++++.|+++ ..+ +|++|+++++|||++.+++||+||+||++..+.||+||++|.|+.. .+|
T Consensus 303 ~~~~h~~~~~~~r~~~~~~f~~g--~~~-vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~ 377 (417)
T 2i4i_A 303 CTSIHGDRSQRDREEALHQFRSG--KSP-ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG--LAT 377 (417)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHT--SSC-EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCE--EEE
T ss_pred eeEecCCCCHHHHHHHHHHHHcC--CCC-EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCc--eEE
Confidence 99999999999999999999974 333 5999999999999999999999999999999999999999999764 455
Q ss_pred EEecCC
Q 004880 603 RLATAQ 608 (725)
Q Consensus 603 rli~~~ 608 (725)
.|++..
T Consensus 378 ~~~~~~ 383 (417)
T 2i4i_A 378 SFFNER 383 (417)
T ss_dssp EEECGG
T ss_pred EEEccc
Confidence 556554
No 27
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.97 E-value=9.6e-29 Score=271.97 Aligned_cols=329 Identities=18% Similarity=0.240 Sum_probs=219.6
Q ss_pred CCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHH-HhCCCCCCcEEEEcCc-cHHHHHHHHHHhC---
Q 004880 153 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLS-TLSNWVNEISRFV--- 227 (725)
Q Consensus 153 ~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l-~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~--- 227 (725)
...++|||.+++..++. ..+.++|+..+||+|||++++..+... ......+++|||+|.. +..||.+.+.++.
T Consensus 45 ~~~~~~~Q~~~i~~~~~--~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 122 (412)
T 3fht_A 45 FNRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFY 122 (412)
T ss_dssp CCSCCHHHHHHHHHHHS--SSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCHHHHHHHHHHhc--CCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhc
Confidence 35899999999998875 234789999999999999975554443 3344455899999977 6678888777764
Q ss_pred CCceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH--hhhhcCccEEEEccccccCC---cchHHHHH
Q 004880 228 PSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK--YLRHYNWKYLVVDEGHRLKN---PKCKLLKE 302 (725)
Q Consensus 228 p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~--~l~~~~~~~vIvDEaH~ikn---~~s~~~~~ 302 (725)
+...+....+..... .......+|+|+|++.+...+.. .+...++++||+||||++.. ........
T Consensus 123 ~~~~~~~~~~~~~~~---------~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~ 193 (412)
T 3fht_A 123 PELKLAYAVRGNKLE---------RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRI 193 (412)
T ss_dssp TTCCEEEECTTCCCC---------TTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHH
T ss_pred ccceEEEeecCcchh---------hhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHH
Confidence 566777666654321 11224568999999998766422 23334689999999998743 22233333
Q ss_pred HhcCC-CCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHHHHHHhhhh
Q 004880 303 LKYIP-IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRP 381 (725)
Q Consensus 303 l~~l~-~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p 381 (725)
+..++ ....+++||||-. +++.++....+. |
T Consensus 194 ~~~~~~~~~~i~~SAT~~~----~~~~~~~~~~~~--------------------------------------------~ 225 (412)
T 3fht_A 194 QRMLPRNCQMLLFSATFED----SVWKFAQKVVPD--------------------------------------------P 225 (412)
T ss_dssp HHTSCTTCEEEEEESCCCH----HHHHHHHHHSSS--------------------------------------------C
T ss_pred HhhCCCCceEEEEEeecCH----HHHHHHHHhcCC--------------------------------------------C
Confidence 44443 3467999999832 111111100000 0
Q ss_pred hhhheehhhHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhh
Q 004880 382 FLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLES 461 (725)
Q Consensus 382 ~~lRR~k~dv~~~lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~~~~hp~l~~~ 461 (725)
..+.-.. .....+......+.+..
T Consensus 226 ~~~~~~~--~~~~~~~~~~~~~~~~~------------------------------------------------------ 249 (412)
T 3fht_A 226 NVIKLKR--EEETLDTIKQYYVLCSS------------------------------------------------------ 249 (412)
T ss_dssp EEECCCG--GGSSCTTEEEEEEECSS------------------------------------------------------
T ss_pred eEEeecc--ccccccCceEEEEEcCC------------------------------------------------------
Confidence 0000000 00011111122221111
Q ss_pred hccCCCCCCchHHHHHhhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHH
Q 004880 462 AFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQD 541 (725)
Q Consensus 462 ~~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~ 541 (725)
...|+..+..++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.
T Consensus 250 ----------------~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~ 311 (412)
T 3fht_A 250 ----------------RDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIER 311 (412)
T ss_dssp ----------------HHHHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHH
T ss_pred ----------------hHHHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHH
Confidence 012444444444432 46799999999999999999999999999999999999999999999
Q ss_pred HhCCCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCc------chhhhHhHhhHhcCCCCceEEEEEecCCCHHHHHH
Q 004880 542 FNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNP------QMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRIL 615 (725)
Q Consensus 542 F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~~D~~wNp------~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TiEe~i~ 615 (725)
|+++ ... +|++|+++++|||++++++||+||+||++ ..+.||+||++|.|+... +|.|+... -+..++
T Consensus 312 f~~g--~~~-vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~-~~~~~~ 385 (412)
T 3fht_A 312 FREG--KEK-VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGL--AVNMVDSK-HSMNIL 385 (412)
T ss_dssp HHTT--SCS-EEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEE--EEEEECSH-HHHHHH
T ss_pred HHCC--CCc-EEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCce--EEEEEcCh-hhHHHH
Confidence 9974 334 59999999999999999999999999987 689999999999996544 44455432 234455
Q ss_pred HHHHH
Q 004880 616 KRAFS 620 (725)
Q Consensus 616 ~~~~~ 620 (725)
.....
T Consensus 386 ~~i~~ 390 (412)
T 3fht_A 386 NRIQE 390 (412)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 28
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.97 E-value=3.3e-29 Score=283.77 Aligned_cols=308 Identities=18% Similarity=0.177 Sum_probs=218.5
Q ss_pred ccCCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCc-cHHHHHHHHHHhCCC
Q 004880 151 LTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVPS 229 (725)
Q Consensus 151 ~~~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~ 229 (725)
+....++|+|.+++..++. +.++++..+||+|||+..+..+. .. .+.+|||+|.. ++.+|.+.+..+ +
T Consensus 21 ~g~~~~r~~Q~~~i~~il~----g~d~lv~apTGsGKTl~~~lp~l--~~---~g~~lvi~P~~aL~~q~~~~l~~~--g 89 (523)
T 1oyw_A 21 FGYQQFRPGQEEIIDTVLS----GRDCLVVMPTGGGKSLCYQIPAL--LL---NGLTVVVSPLISLMKDQVDQLQAN--G 89 (523)
T ss_dssp TCCSSCCTTHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHH--HS---SSEEEEECSCHHHHHHHHHHHHHT--T
T ss_pred hCCCCCCHHHHHHHHHHHc----CCCEEEECCCCcHHHHHHHHHHH--Hh---CCCEEEECChHHHHHHHHHHHHHc--C
Confidence 3346899999999999875 78999999999999986543322 22 36799999975 778899999987 4
Q ss_pred ceEEEEeCChhhHH--HHHHhcCCCCCCCCCCEEEecHHHHHHH-HHHhhhhcCccEEEEccccccCCcc---h----HH
Q 004880 230 VSAIIYHGSKKERD--EIRRKHMPRAIGPKFPIVVTSYEVALSD-ARKYLRHYNWKYLVVDEGHRLKNPK---C----KL 299 (725)
Q Consensus 230 ~~v~~~~g~~~~r~--~~~~~~~~~~~~~~~~vvItsye~~~~~-~~~~l~~~~~~~vIvDEaH~ikn~~---s----~~ 299 (725)
+.+..+++...... ...... ..+..+++++|++.+... ....+...++++|||||||++...+ . .+
T Consensus 90 i~~~~l~~~~~~~~~~~~~~~~----~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l 165 (523)
T 1oyw_A 90 VAAACLNSTQTREQQLEVMTGC----RTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAAL 165 (523)
T ss_dssp CCEEEECTTSCHHHHHHHHHHH----HHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGG
T ss_pred CcEEEEeCCCCHHHHHHHHHHH----hcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHH
Confidence 56666776543221 111110 114678999999998643 2244556789999999999996533 1 12
Q ss_pred HHHHhcCCCCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHHHHHHhh
Q 004880 300 LKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAIL 379 (725)
Q Consensus 300 ~~~l~~l~~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l 379 (725)
......++...+++|||||-.....++...+.+-.|..+..
T Consensus 166 ~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~--------------------------------------- 206 (523)
T 1oyw_A 166 GQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS--------------------------------------- 206 (523)
T ss_dssp GGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEEC---------------------------------------
T ss_pred HHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeC---------------------------------------
Confidence 22334456778899999996554455544443322211000
Q ss_pred hhhhhheehhhHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhh
Q 004880 380 RPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLL 459 (725)
Q Consensus 380 ~p~~lRR~k~dv~~~lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~~~~hp~l~ 459 (725)
....|.. .+.+.- .
T Consensus 207 ------------~~~r~~l-~~~v~~-~---------------------------------------------------- 220 (523)
T 1oyw_A 207 ------------SFDRPNI-RYMLME-K---------------------------------------------------- 220 (523)
T ss_dssp ------------CCCCTTE-EEEEEE-C----------------------------------------------------
T ss_pred ------------CCCCCce-EEEEEe-C----------------------------------------------------
Confidence 0001111 111100 0
Q ss_pred hhhccCCCCCCchHHHHHhhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHH
Q 004880 460 ESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQI 539 (725)
Q Consensus 460 ~~~~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i 539 (725)
..+...+.+++... .+.++||||+.....+.+...|...|+.+..+||+++.++|..++
T Consensus 221 -------------------~~~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~ 279 (523)
T 1oyw_A 221 -------------------FKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQ 279 (523)
T ss_dssp -------------------SSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred -------------------CCHHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHH
Confidence 11333344444432 578999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCCCceEEE
Q 004880 540 QDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVY 602 (725)
Q Consensus 540 ~~F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vy 602 (725)
+.|.++ ... +|++|.++|+|||++.++.||+||+|+|+..|.|++||++|.|+...+.++
T Consensus 280 ~~f~~g--~~~-vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~ 339 (523)
T 1oyw_A 280 EKFQRD--DLQ-IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLF 339 (523)
T ss_dssp HHHHTT--SCS-EEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred HHHHcC--CCe-EEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEE
Confidence 999974 344 499999999999999999999999999999999999999999987665443
No 29
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.97 E-value=1e-28 Score=272.51 Aligned_cols=317 Identities=16% Similarity=0.170 Sum_probs=219.8
Q ss_pred CCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCc-cHHHHHHHHHHhCC-Cc
Q 004880 153 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVP-SV 230 (725)
Q Consensus 153 ~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p-~~ 230 (725)
+.+++|||.+++..++. +.++|+..+||+|||+.++..+..... ..+.+|||+|.. +..||.+++.+|.+ ++
T Consensus 19 ~~~~~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~l~~~~~~~~--~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 92 (414)
T 3oiy_A 19 GKDLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLAR--KGKKSALVFPTVTLVKQTLERLQKLADEKV 92 (414)
T ss_dssp SSCCCHHHHHHHHHHTT----TCCEECCSCSSSSHHHHHHHHHHHHHT--TTCCEEEEESSHHHHHHHHHHHHHHCCSSC
T ss_pred CCCCCHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHhc--CCCEEEEEECCHHHHHHHHHHHHHHccCCc
Confidence 55799999999998864 779999999999999966655555443 346899999975 77999999999986 77
Q ss_pred eEEEEeCChhhH---HHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEccccccCC-------------
Q 004880 231 SAIIYHGSKKER---DEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKN------------- 294 (725)
Q Consensus 231 ~v~~~~g~~~~r---~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~l~~~~~~~vIvDEaH~ikn------------- 294 (725)
.+..++|..... ..+... ..+..+|+|+|++.+...+. .+...++++||+||||++..
T Consensus 93 ~v~~~~g~~~~~~~~~~~~~l-----~~~~~~Iiv~Tp~~l~~~l~-~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~ 166 (414)
T 3oiy_A 93 KIFGFYSSMKKEEKEKFEKSF-----EEDDYHILVFSTQFVSKNRE-KLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVG 166 (414)
T ss_dssp CEEECCTTSCHHHHHHHHHHH-----HHTCCSEEEEEHHHHHHCHH-HHTTCCCSEEEESCHHHHHHCHHHHHHHHHHTT
T ss_pred eEEEEECCCChhhHHHHHHHh-----hcCCCCEEEECHHHHHHHHH-HhccccccEEEEeChHhhhhccchhhhHHhhcC
Confidence 888888876541 111111 11347999999999987763 45556899999999998632
Q ss_pred cchH-HHHHHhcC------------CCCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHH
Q 004880 295 PKCK-LLKELKYI------------PIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKE 361 (725)
Q Consensus 295 ~~s~-~~~~l~~l------------~~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~ 361 (725)
.... +...+..+ .....+++||||.+......+ +...+.....
T Consensus 167 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~----------------~~~~~~~~~~-------- 222 (414)
T 3oiy_A 167 IPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLL----------------FRDLLNFTVG-------- 222 (414)
T ss_dssp CCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHH----------------HHHHHSCCSS--------
T ss_pred CcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHH----------------HHHhhccCcC--------
Confidence 2222 22333322 455679999997665433211 0000000000
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhheehhhHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhH
Q 004880 362 ELEEKRRGQMVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGK 441 (725)
Q Consensus 362 ~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~ 441 (725)
. ....++.....+ ..
T Consensus 223 ----------------------------~-~~~~~~~i~~~~-~~----------------------------------- 237 (414)
T 3oiy_A 223 ----------------------------R-LVSVARNITHVR-IS----------------------------------- 237 (414)
T ss_dssp ----------------------------C-CCCCCCSEEEEE-ES-----------------------------------
T ss_pred ----------------------------c-cccccccchhee-ec-----------------------------------
Confidence 0 000111111111 10
Q ss_pred HHHHHHHHHHhcCChhhhhhhccCCCCCCchHHHHHhhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCc
Q 004880 442 LNNLMVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGY 521 (725)
Q Consensus 442 l~~~l~~Lr~~~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~ 521 (725)
..|...|.+++.. .+.++||||+....++.+...|...|+
T Consensus 238 -------------------------------------~~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~ 277 (414)
T 3oiy_A 238 -------------------------------------SRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKF 277 (414)
T ss_dssp -------------------------------------SCCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTC
T ss_pred -------------------------------------cCHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCC
Confidence 1133344455554 358899999999999999999999999
Q ss_pred eEE-EEeCCCCHHHHHHHHHHHhCCCCCceEEEEe----cccccCCCCCCC-CCEEEEeCCC--CCcchhhhHhHhhHhc
Q 004880 522 EVC-RIDGSVRLDERKRQIQDFNDVNSSYRIFLLS----TRAGGLGINLTA-ADTCILYDSD--WNPQMDLQAMDRCHRI 593 (725)
Q Consensus 522 ~~~-~l~G~~~~~~R~~~i~~F~~~~~~~~v~Lls----t~agg~GiNL~~-a~~VI~~D~~--wNp~~~~Qa~gR~~Ri 593 (725)
++. .+||. +|. ++.|++ +.++| |++ |+++++|||+++ +++||+||+| +++..|.|++||++|.
T Consensus 278 ~~~~~~h~~----~r~--~~~f~~--g~~~v-Lvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~ 348 (414)
T 3oiy_A 278 NVGETWSEF----EKN--FEDFKV--GKINI-LIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRI 348 (414)
T ss_dssp CEEESSSCH----HHH--HHHHHT--TSCSE-EEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCE
T ss_pred ceehhhcCc----chH--HHHHhC--CCCeE-EEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccC
Confidence 998 88884 444 999997 45555 666 999999999999 9999999999 9999999999999999
Q ss_pred CCC--CceEEEEEecCCCHHHHHHHHHHHHHH
Q 004880 594 GQT--KPVHVYRLATAQSVEGRILKRAFSKLK 623 (725)
Q Consensus 594 GQ~--k~V~Vyrli~~~TiEe~i~~~~~~K~~ 623 (725)
|+. +.-.++.|+ -|...++.......
T Consensus 349 g~~~~~~g~~i~~~----~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 349 LNGVLVKGVSVIFE----EDEEIFESLKTRLL 376 (414)
T ss_dssp ETTEECCEEEEEEC----CCHHHHHHHHHHHH
T ss_pred CCCCCcceEEEEEE----ccHHHHHHHHHHhc
Confidence 986 566777777 24455555555444
No 30
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.96 E-value=1.7e-28 Score=280.92 Aligned_cols=314 Identities=14% Similarity=0.103 Sum_probs=214.2
Q ss_pred cCCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCc-cHHHHHHHHHHhCCCc
Q 004880 152 TGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVPSV 230 (725)
Q Consensus 152 ~~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~~ 230 (725)
....++|+|.+++..++. +.++++..+||+|||+..+..+. .. .+.+|||+|.. ++.+|.+.+.++ ++
T Consensus 41 g~~~~rp~Q~~~i~~il~----g~d~lv~~pTGsGKTl~~~lpal--~~---~g~~lVisP~~~L~~q~~~~l~~~--gi 109 (591)
T 2v1x_A 41 KLEKFRPLQLETINVTMA----GKEVFLVMPTGGGKSLCYQLPAL--CS---DGFTLVICPLISLMEDQLMVLKQL--GI 109 (591)
T ss_dssp CCCSCCTTHHHHHHHHHT----TCCEEEECCTTSCTTHHHHHHHH--TS---SSEEEEECSCHHHHHHHHHHHHHH--TC
T ss_pred CCCCCCHHHHHHHHHHHc----CCCEEEEECCCChHHHHHHHHHH--Hc---CCcEEEEeCHHHHHHHHHHHHHhc--CC
Confidence 345899999999999875 78899999999999986543332 22 36899999964 778999999998 56
Q ss_pred eEEEEeCChhhHH--HHHHhcCCCCCCCCCCEEEecHHHHHH--HH----HHhhhhcCccEEEEccccccCCcc------
Q 004880 231 SAIIYHGSKKERD--EIRRKHMPRAIGPKFPIVVTSYEVALS--DA----RKYLRHYNWKYLVVDEGHRLKNPK------ 296 (725)
Q Consensus 231 ~v~~~~g~~~~r~--~~~~~~~~~~~~~~~~vvItsye~~~~--~~----~~~l~~~~~~~vIvDEaH~ikn~~------ 296 (725)
.+..++|...... ...... ....+..+|+++|++.+.. .+ ...+...++++|||||||++...+
T Consensus 110 ~~~~l~~~~~~~~~~~~~~~l--~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~ 187 (591)
T 2v1x_A 110 SATMLNASSSKEHVKWVHAEM--VNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPD 187 (591)
T ss_dssp CEEECCSSCCHHHHHHHHHHH--HCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGG
T ss_pred cEEEEeCCCCHHHHHHHHHHh--hcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHH
Confidence 6777777543322 111111 0012578999999998753 11 222233478999999999986432
Q ss_pred -hHHHHHHhcCCCCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHHHH
Q 004880 297 -CKLLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKL 375 (725)
Q Consensus 297 -s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 375 (725)
..+......++...+++|||||-.....++...+..-.+..
T Consensus 188 ~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~-------------------------------------- 229 (591)
T 2v1x_A 188 YKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFT-------------------------------------- 229 (591)
T ss_dssp GGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEE--------------------------------------
T ss_pred HHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEE--------------------------------------
Confidence 12223334456778899999995433333333322211100
Q ss_pred HHhhhhhhhheehhhHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCC
Q 004880 376 HAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNH 455 (725)
Q Consensus 376 ~~~l~p~~lRR~k~dv~~~lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~~~~h 455 (725)
+. . ....|.....+...+-..
T Consensus 230 --------~~---~--~~~r~nl~~~v~~~~~~~---------------------------------------------- 250 (591)
T 2v1x_A 230 --------FT---A--SFNRPNLYYEVRQKPSNT---------------------------------------------- 250 (591)
T ss_dssp --------EE---C--CCCCTTEEEEEEECCSSH----------------------------------------------
T ss_pred --------Ee---c--CCCCcccEEEEEeCCCcH----------------------------------------------
Confidence 00 0 000111111111100000
Q ss_pred hhhhhhhccCCCCCCchHHHHHhhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHH
Q 004880 456 PDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDER 535 (725)
Q Consensus 456 p~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R 535 (725)
..++..|.+++... ..+.++||||......+.+...|...|+.+..+||+++..+|
T Consensus 251 -----------------------~~~~~~l~~~l~~~-~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R 306 (591)
T 2v1x_A 251 -----------------------EDFIEDIVKLINGR-YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDK 306 (591)
T ss_dssp -----------------------HHHHHHHHHHHTTT-TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHH
T ss_pred -----------------------HHHHHHHHHHHHHh-ccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHH
Confidence 01122222222211 257899999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCCCceEEE
Q 004880 536 KRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVY 602 (725)
Q Consensus 536 ~~~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vy 602 (725)
..+++.|.++ .+. +|++|.++|+|||++.++.||+||+|+++..|.|++||++|.|+...+.++
T Consensus 307 ~~~~~~F~~g--~~~-VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 307 TTVHRKWSAN--EIQ-VVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp HHHHHHHHTT--SSS-EEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred HHHHHHHHcC--CCe-EEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 9999999974 344 599999999999999999999999999999999999999999987665554
No 31
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.96 E-value=6e-28 Score=277.81 Aligned_cols=337 Identities=15% Similarity=0.181 Sum_probs=215.8
Q ss_pred CCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHH-HHHhCC----CCCCcEEEEcCc-cHHHHHHHHHHh
Q 004880 153 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLA-HLKGNG----LHGPYLVIAPLS-TLSNWVNEISRF 226 (725)
Q Consensus 153 ~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~-~l~~~~----~~~~~LIV~P~s-ll~~W~~E~~~~ 226 (725)
-..|+|||.+++..++. ..+.+.|+..+||+|||++++..+. .+.... ....+|||||.. +..||.+++.++
T Consensus 41 ~~~~~~~Q~~~i~~il~--~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~ 118 (579)
T 3sqw_A 41 FPGLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKI 118 (579)
T ss_dssp CSSCCHHHHHHHHHHHC--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc--cCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHH
Confidence 34799999999988872 2367889999999999998655444 443322 234789999975 778999999986
Q ss_pred C------CCceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHh--hhhcCccEEEEccccccCCcc--
Q 004880 227 V------PSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKY--LRHYNWKYLVVDEGHRLKNPK-- 296 (725)
Q Consensus 227 ~------p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~--l~~~~~~~vIvDEaH~ikn~~-- 296 (725)
+ +...+....|.......+.... ....+|+|+|++.+...+... .....+++|||||||++....
T Consensus 119 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-----~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~ 193 (579)
T 3sqw_A 119 HDMNYGLKKYACVSLVGGTDFRAAMNKMN-----KLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFR 193 (579)
T ss_dssp HHHCGGGTTSCEEEECTTSCHHHHHHHHH-----HHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTH
T ss_pred HhhcccccceEEEEEECCccHHHHHHHHh-----cCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCH
Confidence 4 4456666666554443332211 025689999999997765331 222357899999999987543
Q ss_pred hH---HHHHHhcCC-----CCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHH
Q 004880 297 CK---LLKELKYIP-----IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRR 368 (725)
Q Consensus 297 s~---~~~~l~~l~-----~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ 368 (725)
.. +...+.... ....+++|||+-.. ..++.. .+....
T Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~-v~~~~~---~~l~~~------------------------------- 238 (579)
T 3sqw_A 194 DDLETISGILNEKNSKSADNIKTLLFSATLDDK-VQKLAN---NIMNKK------------------------------- 238 (579)
T ss_dssp HHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTH-HHHHTT---TTCCSS-------------------------------
T ss_pred HHHHHHHHHhhhhhcccccCceEEEEeccCChH-HHHHHH---HHcCCC-------------------------------
Confidence 22 222222222 44689999997321 111111 000000
Q ss_pred HHHHHHHHHhhhhhhhheehhhHhhcCCCc-eEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHH
Q 004880 369 GQMVAKLHAILRPFLLRRMKSDVEQMLPRK-KEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMV 447 (725)
Q Consensus 369 ~~~~~~L~~~l~p~~lRR~k~dv~~~lP~k-~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 447 (725)
....+...... ....... ....+.+.-..
T Consensus 239 -----------~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~-------------------------------------- 268 (579)
T 3sqw_A 239 -----------ECLFLDTVDKN-EPEAHERIDQSVVISEKFA-------------------------------------- 268 (579)
T ss_dssp -----------EEEEEESSCSS-SCSSCTTEEEEEEEESSTT--------------------------------------
T ss_pred -----------ceEEEeecCcc-ccccccccceEEEEecchh--------------------------------------
Confidence 00000000000 0000111 11111111100
Q ss_pred HHHHhcCChhhhhhhccCCCCCCchHHHHHhhcHHHHHHHHHHHHh--hCCCcEEEEccchhHHHHHHHHHhhc---Cce
Q 004880 448 QLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLF--ARNHKVLVFSQWTKILDIMEYYFNEK---GYE 522 (725)
Q Consensus 448 ~Lr~~~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~--~~~~kvlIFsq~~~~ld~l~~~L~~~---g~~ 522 (725)
..+...+..+...+. ..+.++||||.....++.+...|... |+.
T Consensus 269 -------------------------------~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~ 317 (579)
T 3sqw_A 269 -------------------------------NSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLP 317 (579)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSC
T ss_pred -------------------------------hhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCc
Confidence 001111112222221 45789999999999999999999887 999
Q ss_pred EEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCCCceEEE
Q 004880 523 VCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVY 602 (725)
Q Consensus 523 ~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vy 602 (725)
+..+||+++..+|..+++.|.+ +... +|++|+++++|||++.+++||+||+|+++..|.|++||++|.|+...+ +
T Consensus 318 v~~~hg~~~~~~R~~~~~~F~~--g~~~-vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~--i 392 (579)
T 3sqw_A 318 ILEFHGKITQNKRTSLVKRFKK--DESG-ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSS--V 392 (579)
T ss_dssp EEEESTTSCHHHHHHHHHHHHH--CSSE-EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEE--E
T ss_pred EEEecCCCCHHHHHHHHHHhhc--CCCe-EEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceE--E
Confidence 9999999999999999999997 3444 599999999999999999999999999999999999999999975544 4
Q ss_pred EEecCCCHHHHHHHHHH
Q 004880 603 RLATAQSVEGRILKRAF 619 (725)
Q Consensus 603 rli~~~TiEe~i~~~~~ 619 (725)
.|++.. |...++...
T Consensus 393 ~~~~~~--e~~~~~~l~ 407 (579)
T 3sqw_A 393 LFICKD--ELPFVRELE 407 (579)
T ss_dssp EEEEGG--GHHHHHHHH
T ss_pred EEEccc--HHHHHHHHH
Confidence 445543 444444443
No 32
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.96 E-value=1.7e-27 Score=273.45 Aligned_cols=337 Identities=15% Similarity=0.171 Sum_probs=214.0
Q ss_pred CCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHH-HHHhCC----CCCCcEEEEcCc-cHHHHHHHHHHh
Q 004880 153 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLA-HLKGNG----LHGPYLVIAPLS-TLSNWVNEISRF 226 (725)
Q Consensus 153 ~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~-~l~~~~----~~~~~LIV~P~s-ll~~W~~E~~~~ 226 (725)
...|+|||.+++..++. ..+.+.|++.+||+|||++++..+. .+.... ...++|||+|.. +..||.+++.++
T Consensus 92 ~~~~~~~Q~~~i~~~l~--~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~ 169 (563)
T 3i5x_A 92 FPGLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKI 169 (563)
T ss_dssp CSSCCHHHHHHHHHHHS--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhc--CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHH
Confidence 34799999999988872 2367889999999999998655444 444332 124799999975 778899999886
Q ss_pred C------CCceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHh--hhhcCccEEEEccccccCCcc--
Q 004880 227 V------PSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKY--LRHYNWKYLVVDEGHRLKNPK-- 296 (725)
Q Consensus 227 ~------p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~--l~~~~~~~vIvDEaH~ikn~~-- 296 (725)
+ +...+....|............ ....+|+|+|++.+...+... .....+++|||||||++....
T Consensus 170 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~ 244 (563)
T 3i5x_A 170 HDMNYGLKKYACVSLVGGTDFRAAMNKMN-----KLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFR 244 (563)
T ss_dssp HHHCGGGTTSCEEEECTTSCHHHHHHHHH-----HHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTH
T ss_pred HhhccccCceeEEEEECCcCHHHHHHHHh-----cCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchH
Confidence 3 3455666666554433322211 125689999999987665332 122347899999999986543
Q ss_pred hH---HHHHHhcC-----CCCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHH
Q 004880 297 CK---LLKELKYI-----PIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRR 368 (725)
Q Consensus 297 s~---~~~~l~~l-----~~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ 368 (725)
.. +...+... .....+++||||-. ...++.. .+.....
T Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~~~~~---~~~~~~~------------------------------ 290 (563)
T 3i5x_A 245 DDLETISGILNEKNSKSADNIKTLLFSATLDD-KVQKLAN---NIMNKKE------------------------------ 290 (563)
T ss_dssp HHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT-HHHHHTT---TTCCSSE------------------------------
T ss_pred HHHHHHHHhhhhccccCccCceEEEEEccCCH-HHHHHHH---HhcCCCc------------------------------
Confidence 22 22222221 14468999999832 1121111 1000000
Q ss_pred HHHHHHHHHhhhhhhhheehhhHhhcCCCc-eEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHH
Q 004880 369 GQMVAKLHAILRPFLLRRMKSDVEQMLPRK-KEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMV 447 (725)
Q Consensus 369 ~~~~~~L~~~l~p~~lRR~k~dv~~~lP~k-~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 447 (725)
...+..... ........ ....+.+.....
T Consensus 291 ------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------------------------------------- 320 (563)
T 3i5x_A 291 ------------CLFLDTVDK-NEPEAHERIDQSVVISEKFAN------------------------------------- 320 (563)
T ss_dssp ------------EEEEESSCS-SSCSSCTTEEEEEEEESSTTH-------------------------------------
T ss_pred ------------eEEEeccCC-CCccccccCceEEEECchhHh-------------------------------------
Confidence 000000000 00000111 111111111000
Q ss_pred HHHHhcCChhhhhhhccCCCCCCchHHHHHhhcHHHHHHHHHHHH--hhCCCcEEEEccchhHHHHHHHHHhhc---Cce
Q 004880 448 QLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARL--FARNHKVLVFSQWTKILDIMEYYFNEK---GYE 522 (725)
Q Consensus 448 ~Lr~~~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l--~~~~~kvlIFsq~~~~ld~l~~~L~~~---g~~ 522 (725)
.....+..+...+ ...+.++||||+....++.+...|... |++
T Consensus 321 --------------------------------~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~ 368 (563)
T 3i5x_A 321 --------------------------------SIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLP 368 (563)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSC
T ss_pred --------------------------------hHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCce
Confidence 0001111111111 145789999999999999999999887 999
Q ss_pred EEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCCCceEEE
Q 004880 523 VCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVY 602 (725)
Q Consensus 523 ~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vy 602 (725)
+..+||+++..+|..+++.|.++ .+. +|++|+++++|||++++++||+||+|+++..|.|++||++|.|+.. .++
T Consensus 369 v~~~h~~~~~~~R~~~~~~f~~g--~~~-vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g--~~i 443 (563)
T 3i5x_A 369 ILEFHGKITQNKRTSLVKRFKKD--ESG-ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEG--SSV 443 (563)
T ss_dssp EEEESTTSCHHHHHHHHHHHHHC--SSE-EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCE--EEE
T ss_pred EEEecCCCCHHHHHHHHHHHhcC--CCC-EEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCc--eEE
Confidence 99999999999999999999973 444 5999999999999999999999999999999999999999999654 444
Q ss_pred EEecCCCHHHHHHHHHH
Q 004880 603 RLATAQSVEGRILKRAF 619 (725)
Q Consensus 603 rli~~~TiEe~i~~~~~ 619 (725)
.|++.. |...++...
T Consensus 444 ~~~~~~--e~~~~~~l~ 458 (563)
T 3i5x_A 444 LFICKD--ELPFVRELE 458 (563)
T ss_dssp EEEEGG--GHHHHHHHH
T ss_pred EEEchh--HHHHHHHHH
Confidence 455554 344444443
No 33
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.95 E-value=8.6e-29 Score=280.03 Aligned_cols=313 Identities=16% Similarity=0.181 Sum_probs=189.4
Q ss_pred cccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHh-CCCCCCcEEEEcCc-cHHHHHHHHHHhCCCceE
Q 004880 155 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG-NGLHGPYLVIAPLS-TLSNWVNEISRFVPSVSA 232 (725)
Q Consensus 155 ~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~-~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~~~v 232 (725)
.++|||.+++..++.. .+.++|+..+||+|||++++..+..... .+..+++|||||.. ++.||.+++.++++...+
T Consensus 141 ~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~ 218 (508)
T 3fho_A 141 XXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEV 218 (508)
T ss_dssp ECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSC
T ss_pred CcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCe
Confidence 6999999999888741 2378999999999999997665555444 33456899999977 789999999999765443
Q ss_pred EEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEccccccCC---cchHHHHHHhcCC-
Q 004880 233 IIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKN---PKCKLLKELKYIP- 307 (725)
Q Consensus 233 ~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~-~l~~~~~~~vIvDEaH~ikn---~~s~~~~~l~~l~- 307 (725)
.+..+....... ......+|+|+|++.+...... .+....+++|||||||++.. ........+..++
T Consensus 219 ~~~~~~~~~~~~--------~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~ 290 (508)
T 3fho_A 219 KTAFGIKDSVPK--------GAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPR 290 (508)
T ss_dssp CEEC------------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCT
T ss_pred eEEEEeCCcccc--------cccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCc
Confidence 333322211110 0113678999999998776432 22334589999999999864 2233333444454
Q ss_pred CCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhee
Q 004880 308 IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRRM 387 (725)
Q Consensus 308 ~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~ 387 (725)
....++|||||-. ...++ ..++... +..+.-.
T Consensus 291 ~~~~i~lSAT~~~-~~~~~------------------~~~~~~~-----------------------------~~~i~~~ 322 (508)
T 3fho_A 291 NTQIVLFSATFSE-RVEKY------------------AERFAPN-----------------------------ANEIRLK 322 (508)
T ss_dssp TCEEEEEESCCST-HHHHH------------------HHHHSTT-----------------------------CEEECCC
T ss_pred CCeEEEEeCCCCH-HHHHH------------------HHHhcCC-----------------------------CeEEEec
Confidence 4456999999831 11111 1111000 0000000
Q ss_pred hhhHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccCCC
Q 004880 388 KSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSC 467 (725)
Q Consensus 388 k~dv~~~lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~~~~hp~l~~~~~~~~~ 467 (725)
.... ..+......+.
T Consensus 323 ~~~~--~~~~~~~~~~~--------------------------------------------------------------- 337 (508)
T 3fho_A 323 TEEL--SVEGIKQLYMD--------------------------------------------------------------- 337 (508)
T ss_dssp CCC------CCCCEEEE---------------------------------------------------------------
T ss_pred cccC--CcccceEEEEE---------------------------------------------------------------
Confidence 0000 00000000000
Q ss_pred CCCchHHHHHhhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCC
Q 004880 468 FYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNS 547 (725)
Q Consensus 468 ~~~~~~~l~~~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~ 547 (725)
......|...+..++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|+++.
T Consensus 338 -------~~~~~~k~~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~- 407 (508)
T 3fho_A 338 -------CQSEEHKYNVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGT- 407 (508)
T ss_dssp -------C--CHHHHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSS-
T ss_pred -------CCchHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCC-
Confidence 001133555666666543 5689999999999999999999999999999999999999999999999743
Q ss_pred CceEEEEecccccCCCCCCCCCEEEEeCCC------CCcchhhhHhHhhHhcCCCCceEEE
Q 004880 548 SYRIFLLSTRAGGLGINLTAADTCILYDSD------WNPQMDLQAMDRCHRIGQTKPVHVY 602 (725)
Q Consensus 548 ~~~v~Llst~agg~GiNL~~a~~VI~~D~~------wNp~~~~Qa~gR~~RiGQ~k~V~Vy 602 (725)
.+ +|++|+++++|||++.+++||+||+| +++..+.|++||++|.|+...+.++
T Consensus 408 -~~-VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l 466 (508)
T 3fho_A 408 -SK-VLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINF 466 (508)
T ss_dssp -CC-CCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEE
T ss_pred -Ce-EEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEE
Confidence 34 49999999999999999999999999 7899999999999999966555444
No 34
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.95 E-value=1.6e-27 Score=291.21 Aligned_cols=310 Identities=17% Similarity=0.186 Sum_probs=217.4
Q ss_pred cCCcccchHHHHHHHHHHHhcCCC--CeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCc-cHHHHHHHHHHhCC
Q 004880 152 TGGKLKSYQLKGVKWLISLWQNGL--NGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVP 228 (725)
Q Consensus 152 ~~~~Lr~yQ~~gv~~l~~~~~~~~--~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p 228 (725)
.+.+++|||.+++..++..+.++. ++|++++||+|||.+++..+......+ .++||+||.. +..||.++|.++++
T Consensus 600 f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g--~~vlvlvPt~~La~Q~~~~~~~~~~ 677 (1151)
T 2eyq_A 600 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH--KQVAVLVPTTLLAQQHYDNFRDRFA 677 (1151)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT--CEEEEECSSHHHHHHHHHHHHHHST
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhC--CeEEEEechHHHHHHHHHHHHHHhh
Confidence 356789999999999998776666 899999999999999876555444443 4899999987 66899999998886
Q ss_pred C--ceEEEEeCChh--hHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEccccccCCcchHHHHHHh
Q 004880 229 S--VSAIIYHGSKK--ERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELK 304 (725)
Q Consensus 229 ~--~~v~~~~g~~~--~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~l~~~~~~~vIvDEaH~ikn~~s~~~~~l~ 304 (725)
. ..+..++|... .+....... ..+..+|+|+|++.+... +...++++|||||+|++.. .....++
T Consensus 678 ~~~i~v~~l~~~~~~~~~~~~~~~l----~~g~~dIvV~T~~ll~~~----~~~~~l~lvIiDEaH~~g~---~~~~~l~ 746 (1151)
T 2eyq_A 678 NWPVRIEMISRFRSAKEQTQILAEV----AEGKIDILIGTHKLLQSD----VKFKDLGLLIVDEEHRFGV---RHKERIK 746 (1151)
T ss_dssp TTTCCEEEESTTSCHHHHHHHHHHH----HTTCCSEEEECTHHHHSC----CCCSSEEEEEEESGGGSCH---HHHHHHH
T ss_pred cCCCeEEEEeCCCCHHHHHHHHHHH----hcCCCCEEEECHHHHhCC----ccccccceEEEechHhcCh---HHHHHHH
Confidence 4 56777776432 222221111 124679999999876432 3345789999999999743 3344455
Q ss_pred cCC-CCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 004880 305 YIP-IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFL 383 (725)
Q Consensus 305 ~l~-~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~ 383 (725)
.++ ..+.++|||||.++.+.....-+. .+
T Consensus 747 ~l~~~~~vl~lSATp~p~~l~~~~~~~~--~~------------------------------------------------ 776 (1151)
T 2eyq_A 747 AMRANVDILTLTATPIPRTLNMAMSGMR--DL------------------------------------------------ 776 (1151)
T ss_dssp HHHTTSEEEEEESSCCCHHHHHHHTTTS--EE------------------------------------------------
T ss_pred HhcCCCCEEEEcCCCChhhHHHHHhcCC--Cc------------------------------------------------
Confidence 543 457899999997654332211100 00
Q ss_pred hheehhhHhhcCCCce--EEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhh
Q 004880 384 LRRMKSDVEQMLPRKK--EIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLES 461 (725)
Q Consensus 384 lRR~k~dv~~~lP~k~--e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~~~~hp~l~~~ 461 (725)
..+ ...|... ..........
T Consensus 777 -----~~i-~~~~~~r~~i~~~~~~~~~---------------------------------------------------- 798 (1151)
T 2eyq_A 777 -----SII-ATPPARRLAVKTFVREYDS---------------------------------------------------- 798 (1151)
T ss_dssp -----EEC-CCCCCBCBCEEEEEEECCH----------------------------------------------------
T ss_pred -----eEE-ecCCCCccccEEEEecCCH----------------------------------------------------
Confidence 000 0001100 0011111111
Q ss_pred hccCCCCCCchHHHHHhhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhc--CceEEEEeCCCCHHHHHHHH
Q 004880 462 AFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEK--GYEVCRIDGSVRLDERKRQI 539 (725)
Q Consensus 462 ~~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~--g~~~~~l~G~~~~~~R~~~i 539 (725)
......++.. ..+|++++|||+....++.+...|... ++.+..+||.++..+|.+++
T Consensus 799 --------------------~~i~~~il~~-l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il 857 (1151)
T 2eyq_A 799 --------------------MVVREAILRE-ILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVM 857 (1151)
T ss_dssp --------------------HHHHHHHHHH-HTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHH
T ss_pred --------------------HHHHHHHHHH-HhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHH
Confidence 1111222222 246789999999999999999999887 88999999999999999999
Q ss_pred HHHhCCCCCceEEEEecccccCCCCCCCCCEEEEeCC-CCCcchhhhHhHhhHhcCCCCceEEEEEecCC
Q 004880 540 QDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDS-DWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQ 608 (725)
Q Consensus 540 ~~F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~~D~-~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~ 608 (725)
++|+++ .+. +|++|.++++|||++.+++||++++ +|++..+.|++||++|.|+.. ++|.++..+
T Consensus 858 ~~F~~g--~~~-VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g--~~~ll~~~~ 922 (1151)
T 2eyq_A 858 NDFHHQ--RFN-VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA--YAWLLTPHP 922 (1151)
T ss_dssp HHHHTT--SCC-EEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCE--EEEEEECCG
T ss_pred HHHHcC--CCc-EEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCce--EEEEEECCc
Confidence 999974 444 4999999999999999999999999 689999999999999999654 455565543
No 35
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.4e-26 Score=277.00 Aligned_cols=361 Identities=13% Similarity=0.127 Sum_probs=222.0
Q ss_pred CCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcC-ccHHHHHHHHHHhCCCce
Q 004880 153 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL-STLSNWVNEISRFVPSVS 231 (725)
Q Consensus 153 ~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p~~~ 231 (725)
+..|+|||.+++..+.. +.+++++.+||+|||+++...+......+ +++||++|. .+..||.++|.++++ .
T Consensus 84 ~f~L~~~Q~eai~~l~~----g~~vLV~apTGSGKTlva~lai~~~l~~g--~rvL~l~PtkaLa~Q~~~~l~~~~~--~ 155 (1010)
T 2xgj_A 84 PFTLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLKNK--QRVIYTSPIKALSNQKYRELLAEFG--D 155 (1010)
T ss_dssp SSCCCHHHHHHHHHHHH----TCEEEEECCTTSCHHHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHHHHHHS--C
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHhccC--CeEEEECChHHHHHHHHHHHHHHhC--C
Confidence 45799999999999875 78899999999999999866555555443 689999997 577899999999886 6
Q ss_pred EEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHh-hhhcCccEEEEccccccCCcc--hHHHHHHhcCC-
Q 004880 232 AIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKY-LRHYNWKYLVVDEGHRLKNPK--CKLLKELKYIP- 307 (725)
Q Consensus 232 v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~-l~~~~~~~vIvDEaH~ikn~~--s~~~~~l~~l~- 307 (725)
+.+++|.... ....+|+|+|++.+.+.+... ....++++|||||+|++.+.. ......+..++
T Consensus 156 vglltGd~~~-------------~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~ 222 (1010)
T 2xgj_A 156 VGLMTGDITI-------------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPD 222 (1010)
T ss_dssp EEEECSSCEE-------------CTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCT
T ss_pred EEEEeCCCcc-------------CCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCC
Confidence 6777776532 135689999999987654321 222357899999999997653 33334445554
Q ss_pred CCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhee
Q 004880 308 IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRRM 387 (725)
Q Consensus 308 ~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~ 387 (725)
..+.|+||||+- | . .+|..|+..... .|..+-.
T Consensus 223 ~~~il~LSATi~-n-~------------------~e~a~~l~~~~~--------------------------~~~~vi~- 255 (1010)
T 2xgj_A 223 KVRYVFLSATIP-N-A------------------MEFAEWICKIHS--------------------------QPCHIVY- 255 (1010)
T ss_dssp TCEEEEEECCCT-T-H------------------HHHHHHHHHHHT--------------------------SCEEEEE-
T ss_pred CCeEEEEcCCCC-C-H------------------HHHHHHHHhhcC--------------------------CCeEEEe-
Confidence 456799999952 2 2 234444321000 0000000
Q ss_pred hhhHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHH-hcCChhhhhhhccCC
Q 004880 388 KSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRK-NCNHPDLLESAFSDS 466 (725)
Q Consensus 388 k~dv~~~lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~-~~~hp~l~~~~~~~~ 466 (725)
...-|......++..-... +|. + ....+......+...+..+.. ....|.-. ...
T Consensus 256 ----~~~rp~pl~~~~~~~~~~~---~~~-~------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~ 311 (1010)
T 2xgj_A 256 ----TNFRPTPLQHYLFPAHGDG---IYL-V------------VDEKSTFREENFQKAMASISNQIGDDPNST----DSR 311 (1010)
T ss_dssp ----ECCCSSCEEEEEEETTSSC---CEE-E------------ECTTCCBCHHHHHHHHHTCC-----------------
T ss_pred ----cCCCcccceEEEEecCCcc---eee-e------------eccccccchHHHHHHHHHHhhhhccccccc----ccc
Confidence 0011212222222100000 000 0 000000000000000000000 00000000 000
Q ss_pred CCCCchHHHHHh-hc-HHHHHHHHHHHHhh-CCCcEEEEccchhHHHHHHHHHhhcCce---------------------
Q 004880 467 CFYPPVEQIVEQ-CG-KFRLLDRLLARLFA-RNHKVLVFSQWTKILDIMEYYFNEKGYE--------------------- 522 (725)
Q Consensus 467 ~~~~~~~~l~~~-s~-K~~~L~~ll~~l~~-~~~kvlIFsq~~~~ld~l~~~L~~~g~~--------------------- 522 (725)
........ ... .+ ....+..++..+.. .+.++||||.....++.+...|...|+.
T Consensus 312 g~~~~~~k-~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~ 390 (1010)
T 2xgj_A 312 GKKGQTYK-GGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPE 390 (1010)
T ss_dssp ------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCG
T ss_pred cccccccc-cccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcch
Confidence 00000000 000 00 02233444444443 3458999999999999998888764432
Q ss_pred ------------------EEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccCCCCCCCCCEEEE----eCC----
Q 004880 523 ------------------VCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCIL----YDS---- 576 (725)
Q Consensus 523 ------------------~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~----~D~---- 576 (725)
+..+||+++..+|..+++.|++ +.++| |++|.++++|||++++++||. ||.
T Consensus 391 ~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~--G~ikV-LVAT~~la~GIDiP~~~vVI~~~~kfd~~~~r 467 (1010)
T 2xgj_A 391 TDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQE--GFLKV-LFATETFSIGLNMPAKTVVFTSVRKWDGQQFR 467 (1010)
T ss_dssp GGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHT--TCCSE-EEEEGGGGGSTTCCBSEEEESCSEEECSSCEE
T ss_pred hhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhc--CCCcE-EEEehHhhccCCCCCceEEEeCCcccCCcCCc
Confidence 7889999999999999999997 44555 999999999999999999999 999
Q ss_pred CCCcchhhhHhHhhHhcCCCCceEEEEEecCCC
Q 004880 577 DWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQS 609 (725)
Q Consensus 577 ~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~T 609 (725)
||+|..|.|++||++|.|+....++|.+++.+.
T Consensus 468 p~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~ 500 (1010)
T 2xgj_A 468 WVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 500 (1010)
T ss_dssp ECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCC
T ss_pred cCCHHHHhHhhhhcccCCCCCceEEEEEECCCC
Confidence 999999999999999999988899999998764
No 36
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.95 E-value=5.5e-28 Score=271.91 Aligned_cols=312 Identities=18% Similarity=0.249 Sum_probs=107.9
Q ss_pred CCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHH-HHhCCCCCCcEEEEcCc-cHHHHHHHHHH---hC
Q 004880 153 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAH-LKGNGLHGPYLVIAPLS-TLSNWVNEISR---FV 227 (725)
Q Consensus 153 ~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~-l~~~~~~~~~LIV~P~s-ll~~W~~E~~~---~~ 227 (725)
...++|+|..++..++. ..+.+.|++.+||+|||++.+..+.. +...+....+|||+|.. +..||.+.+.+ ++
T Consensus 112 ~~~p~~~Q~~ai~~il~--~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 189 (479)
T 3fmp_B 112 FNRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFY 189 (479)
T ss_dssp CCSCCHHHHHHHHHHTS--BSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHc--CCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhC
Confidence 45899999999998874 23478899999999999996544443 33333344799999977 55777666555 45
Q ss_pred CCceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH--hhhhcCccEEEEccccccCC---cchHHHHH
Q 004880 228 PSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK--YLRHYNWKYLVVDEGHRLKN---PKCKLLKE 302 (725)
Q Consensus 228 p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~--~l~~~~~~~vIvDEaH~ikn---~~s~~~~~ 302 (725)
+.+.+.+..+..... .......+|+|+|++.+...+.. ++...++++|||||||++.. ........
T Consensus 190 ~~~~~~~~~~~~~~~---------~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i 260 (479)
T 3fmp_B 190 PELKLAYAVRGNKLE---------RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRI 260 (479)
T ss_dssp TTCCEEEESTTCCCC---------TTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHH
T ss_pred CCceEEEEeCCcccc---------ccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHH
Confidence 667777766654221 11123568999999998766522 33334689999999998853 22233333
Q ss_pred HhcCC-CCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHHHHHHhhhh
Q 004880 303 LKYIP-IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRP 381 (725)
Q Consensus 303 l~~l~-~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p 381 (725)
+..++ ....+++||||-. +.+.+...
T Consensus 261 ~~~~~~~~~~i~~SAT~~~----~~~~~~~~------------------------------------------------- 287 (479)
T 3fmp_B 261 QRMLPRNCQMLLFSATFED----SVWKFAQK------------------------------------------------- 287 (479)
T ss_dssp HTTSCTTSEEEEEESCCCH----HHHHHHHH-------------------------------------------------
T ss_pred HhhCCccceEEEEeCCCCH----HHHHHHHH-------------------------------------------------
Confidence 33443 4567999999832 11111100
Q ss_pred hhhheehhhHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhh
Q 004880 382 FLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLES 461 (725)
Q Consensus 382 ~~lRR~k~dv~~~lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~~~~hp~l~~~ 461 (725)
.+|......+ . ...... ..+ .+....|+
T Consensus 288 ------------~~~~~~~i~~--~--~~~~~~-~~~----------------------------~~~~~~~~------- 315 (479)
T 3fmp_B 288 ------------VVPDPNVIKL--K--REEETL-DTI----------------------------KQYYVLCS------- 315 (479)
T ss_dssp ------------HSSSEEEEEE--C-------------------------------------------------------
T ss_pred ------------HcCCCeEEec--c--ccccCc-CCc----------------------------eEEEEEeC-------
Confidence 1121111111 0 000000 000 00000000
Q ss_pred hccCCCCCCchHHHHHhhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHH
Q 004880 462 AFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQD 541 (725)
Q Consensus 462 ~~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~ 541 (725)
....|+..|..++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.
T Consensus 316 ---------------~~~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~ 378 (479)
T 3fmp_B 316 ---------------SRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIER 378 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------CHHHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHH
Confidence 0012333344444332 35689999999999999999999999999999999999999999999
Q ss_pred HhCCCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCc------chhhhHhHhhHhcCCCCceE
Q 004880 542 FNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNP------QMDLQAMDRCHRIGQTKPVH 600 (725)
Q Consensus 542 F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~~D~~wNp------~~~~Qa~gR~~RiGQ~k~V~ 600 (725)
|+++ ... +|++|+++++|||++.+++||+||+||++ ..|.|++||++|.|+...+.
T Consensus 379 f~~g--~~~-iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i 440 (479)
T 3fmp_B 379 FREG--KEK-VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAV 440 (479)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHcC--CCc-EEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEE
Confidence 9974 344 59999999999999999999999999876 68999999999999655443
No 37
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.94 E-value=2.6e-27 Score=276.82 Aligned_cols=311 Identities=16% Similarity=0.220 Sum_probs=208.3
Q ss_pred CcccchHHHHHHHHHHHhcCC--CCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCc-cHHHHHHHHHHhCC--
Q 004880 154 GKLKSYQLKGVKWLISLWQNG--LNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVP-- 228 (725)
Q Consensus 154 ~~Lr~yQ~~gv~~l~~~~~~~--~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p-- 228 (725)
..|+|+|.+++..+......+ .+.++..+||+|||++++..+......+ ..++|+||.. +..||.+++.++++
T Consensus 367 f~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g--~qvlvlaPtr~La~Q~~~~l~~~~~~~ 444 (780)
T 1gm5_A 367 FKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG--FQTAFMVPTSILAIQHYRRTVESFSKF 444 (780)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT--SCEEEECSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCcHHHHHHHHHHHHHHhhhc
Confidence 389999999999998755544 4889999999999999877666555443 5899999986 67899999999976
Q ss_pred CceEEEEeCChhhHHH--HHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEccccccCCcchHHHHHHhc-
Q 004880 229 SVSAIIYHGSKKERDE--IRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKY- 305 (725)
Q Consensus 229 ~~~v~~~~g~~~~r~~--~~~~~~~~~~~~~~~vvItsye~~~~~~~~~l~~~~~~~vIvDEaH~ikn~~s~~~~~l~~- 305 (725)
++++..++|+...... .... ...+..+|+|+|++.+... +...++++|||||+|++.... ...+..
T Consensus 445 gi~v~~l~G~~~~~~r~~~~~~----l~~g~~~IvVgT~~ll~~~----~~~~~l~lVVIDEaHr~g~~q---r~~l~~~ 513 (780)
T 1gm5_A 445 NIHVALLIGATTPSEKEKIKSG----LRNGQIDVVIGTHALIQED----VHFKNLGLVIIDEQHRFGVKQ---REALMNK 513 (780)
T ss_dssp SCCEEECCSSSCHHHHHHHHHH----HHSSCCCEEEECTTHHHHC----CCCSCCCEEEEESCCCC--------CCCCSS
T ss_pred CceEEEEeCCCCHHHHHHHHHH----HhcCCCCEEEECHHHHhhh----hhccCCceEEecccchhhHHH---HHHHHHh
Confidence 5788888887644321 1111 1124679999999877432 334567999999999974221 111111
Q ss_pred CCCCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 004880 306 IPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLR 385 (725)
Q Consensus 306 l~~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lR 385 (725)
....+.+++||||.+..+...+ +-..+
T Consensus 514 ~~~~~vL~mSATp~p~tl~~~~----~g~~~------------------------------------------------- 540 (780)
T 1gm5_A 514 GKMVDTLVMSATPIPRSMALAF----YGDLD------------------------------------------------- 540 (780)
T ss_dssp SSCCCEEEEESSCCCHHHHHHH----TCCSS-------------------------------------------------
T ss_pred CCCCCEEEEeCCCCHHHHHHHH----hCCcc-------------------------------------------------
Confidence 2356789999999754332111 00000
Q ss_pred eehhhHhhcCCCceE-EEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhcc
Q 004880 386 RMKSDVEQMLPRKKE-IILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFS 464 (725)
Q Consensus 386 R~k~dv~~~lP~k~e-~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~~~~hp~l~~~~~~ 464 (725)
..+...+|+... ...++ ..
T Consensus 541 ---~s~i~~~p~~r~~i~~~~-~~-------------------------------------------------------- 560 (780)
T 1gm5_A 541 ---VTVIDEMPPGRKEVQTML-VP-------------------------------------------------------- 560 (780)
T ss_dssp ---CEEECCCCSSCCCCEECC-CC--------------------------------------------------------
T ss_pred ---eeeeeccCCCCcceEEEE-ec--------------------------------------------------------
Confidence 000111222111 00000 00
Q ss_pred CCCCCCchHHHHHhhcHHHHHHHHHHHHhhCCCcEEEEccch--------hHHHHHHHHHhh---cCceEEEEeCCCCHH
Q 004880 465 DSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWT--------KILDIMEYYFNE---KGYEVCRIDGSVRLD 533 (725)
Q Consensus 465 ~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~~~kvlIFsq~~--------~~ld~l~~~L~~---~g~~~~~l~G~~~~~ 533 (725)
..+...+...+......+++++|||+.. ..++.+...|.. .|+.+..+||+++..
T Consensus 561 --------------~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~ 626 (780)
T 1gm5_A 561 --------------MDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQE 626 (780)
T ss_dssp --------------SSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCS
T ss_pred --------------cchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHH
Confidence 0111222334444446788899999865 345667777776 478899999999999
Q ss_pred HHHHHHHHHhCCCCCceEEEEecccccCCCCCCCCCEEEEeCCCC-CcchhhhHhHhhHhcCCCCceEEEEEecCCC
Q 004880 534 ERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDW-NPQMDLQAMDRCHRIGQTKPVHVYRLATAQS 609 (725)
Q Consensus 534 ~R~~~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~~D~~w-Np~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~T 609 (725)
+|.++++.|+++ .+.| |++|+++++|||++.+++||+||+++ +...+.|++||++|.|+...|.+ ++...+
T Consensus 627 eR~~v~~~F~~G--~~~I-LVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~il--l~~~~~ 698 (780)
T 1gm5_A 627 EKDRVMLEFAEG--RYDI-LVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFL--VVGDVG 698 (780)
T ss_dssp CSHHHHHHHTTT--SSSB-CCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEEC--CCCSCC
T ss_pred HHHHHHHHHHCC--CCeE-EEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEE--EECCCC
Confidence 999999999974 4444 99999999999999999999999995 78888999999999997655443 444434
No 38
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.2e-25 Score=273.08 Aligned_cols=355 Identities=14% Similarity=0.158 Sum_probs=218.3
Q ss_pred CCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCc-cHHHHHHHHHHhCCCce
Q 004880 153 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVPSVS 231 (725)
Q Consensus 153 ~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~~~ 231 (725)
...|+|||.+++..+. ++.++|++.+||+|||+++...+......+ +++||++|.. +..||.++|.+++. .
T Consensus 182 ~f~ltp~Q~~AI~~i~----~g~dvLV~ApTGSGKTlva~l~i~~~l~~g--~rvlvl~PtraLa~Q~~~~l~~~~~--~ 253 (1108)
T 3l9o_A 182 PFTLDPFQDTAISCID----RGESVLVSAHTSAGKTVVAEYAIAQSLKNK--QRVIYTSPIKALSNQKYRELLAEFG--D 253 (1108)
T ss_dssp SSCCCHHHHHHHHHHT----TTCCEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHHHHHTS--S
T ss_pred CCCCCHHHHHHHHHHH----cCCCEEEECCCCCChHHHHHHHHHHHHhcC--CeEEEEcCcHHHHHHHHHHHHHHhC--C
Confidence 3479999999998874 488999999999999999876666555443 5899999976 67899999999986 5
Q ss_pred EEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHh-hhhcCccEEEEccccccCCcc--hHHHHHHhcCC-
Q 004880 232 AIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKY-LRHYNWKYLVVDEGHRLKNPK--CKLLKELKYIP- 307 (725)
Q Consensus 232 v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~-l~~~~~~~vIvDEaH~ikn~~--s~~~~~l~~l~- 307 (725)
+.+++|... ..+..+|+|+|++.+.+.+... ..-.++++|||||||++.... ......+..++
T Consensus 254 VglltGd~~-------------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~ 320 (1108)
T 3l9o_A 254 VGLMTGDIT-------------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPD 320 (1108)
T ss_dssp EEEECSSCB-------------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCT
T ss_pred ccEEeCccc-------------cCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcCC
Confidence 666777553 2246789999999988765321 112247899999999997643 22333444454
Q ss_pred CCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhee
Q 004880 308 IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRRM 387 (725)
Q Consensus 308 ~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~ 387 (725)
..+.++||||+ .|. .+ |..|+..... .|..+..
T Consensus 321 ~~qvl~lSATi-pn~-~e------------------~a~~l~~~~~--------------------------~~~~vi~- 353 (1108)
T 3l9o_A 321 KVRYVFLSATI-PNA-ME------------------FAEWICKIHS--------------------------QPCHIVY- 353 (1108)
T ss_dssp TSEEEEEECSC-SSC-HH------------------HHHHHHHHTC--------------------------SCEEEEE-
T ss_pred CceEEEEcCCC-CCH-HH------------------HHHHHHhhcC--------------------------CCeEEEe-
Confidence 45679999993 333 22 2222211000 0000000
Q ss_pred hhhHhhcCCCceEEEEEe-----------cCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHh-cCC
Q 004880 388 KSDVEQMLPRKKEIILYA-----------TMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKN-CNH 455 (725)
Q Consensus 388 k~dv~~~lP~k~e~~v~~-----------~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~~-~~h 455 (725)
...-|......++. .........|...+.. +... ...
T Consensus 354 ----~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~---------------------------l~~~~~~~ 402 (1108)
T 3l9o_A 354 ----TNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMAS---------------------------ISNQIGDD 402 (1108)
T ss_dssp ----ECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTT---------------------------C-------
T ss_pred ----cCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHH---------------------------HHhhhccc
Confidence 00111111111111 0110011111111000 0000 000
Q ss_pred hhhhhhhccCCCCCCchHHHHHhhcHHHHHHHHHHHHhhC-CCcEEEEccchhHHHHHHHHHhhcCce------------
Q 004880 456 PDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFAR-NHKVLVFSQWTKILDIMEYYFNEKGYE------------ 522 (725)
Q Consensus 456 p~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~-~~kvlIFsq~~~~ld~l~~~L~~~g~~------------ 522 (725)
+............+... .........+..++..+... +.++||||.....++.+...|...|+.
T Consensus 403 ~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~ 479 (1108)
T 3l9o_A 403 PNSTDSRGKKGQTYKGG---SAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIF 479 (1108)
T ss_dssp -------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHG
T ss_pred ccccccccccccccccc---cccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 00000000000000000 00000133344455554444 469999999999999988887654333
Q ss_pred ---------------------------EEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccCCCCCCCCCEEEEeC
Q 004880 523 ---------------------------VCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYD 575 (725)
Q Consensus 523 ---------------------------~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~~D 575 (725)
+..+||+++..+|..+++.|.++ .++| |++|.++++|||++++++||+++
T Consensus 480 ~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G--~ikV-LVAT~vla~GIDiP~v~~VI~~~ 556 (1108)
T 3l9o_A 480 NNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEG--FLKV-LFATETFSIGLNMPAKTVVFTSV 556 (1108)
T ss_dssp GGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHT--CCCE-EEEESCCCSCCCC--CEEEESCS
T ss_pred HHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCC--CCeE-EEECcHHhcCCCCCCceEEEecC
Confidence 78899999999999999999973 4444 99999999999999999999999
Q ss_pred CCCCcch--------hhhHhHhhHhcCCCCceEEEEEecCCCHHH
Q 004880 576 SDWNPQM--------DLQAMDRCHRIGQTKPVHVYRLATAQSVEG 612 (725)
Q Consensus 576 ~~wNp~~--------~~Qa~gR~~RiGQ~k~V~Vyrli~~~TiEe 612 (725)
.+|++.. |.|++||++|.|+....++|.++..+..+.
T Consensus 557 ~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~ 601 (1108)
T 3l9o_A 557 RKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQ 601 (1108)
T ss_dssp EEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHH
T ss_pred cccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHH
Confidence 8887765 999999999999999999999998875333
No 39
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.93 E-value=5.9e-25 Score=258.48 Aligned_cols=323 Identities=20% Similarity=0.134 Sum_probs=215.1
Q ss_pred CcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCc-cHHHHHHHHHHhCC-Cce
Q 004880 154 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVP-SVS 231 (725)
Q Consensus 154 ~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p-~~~ 231 (725)
..|+|+|.+++..+. ++.+++++.+||+|||+++...+...... .+++++++|.. +..+|.++++++.+ +..
T Consensus 24 ~~l~~~Q~~~i~~i~----~~~~~lv~apTGsGKT~~~~l~il~~~~~--~~~~l~i~P~r~La~q~~~~~~~~~~~g~~ 97 (702)
T 2p6r_A 24 EELFPPQAEAVEKVF----SGKNLLLAMPTAAGKTLLAEMAMVREAIK--GGKSLYVVPLRALAGEKYESFKKWEKIGLR 97 (702)
T ss_dssp -CCCCCCHHHHHHHT----TCSCEEEECSSHHHHHHHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHHTTTTTTTCC
T ss_pred CCCCHHHHHHHHHHh----CCCcEEEEcCCccHHHHHHHHHHHHHHHh--CCcEEEEeCcHHHHHHHHHHHHHHHhcCCE
Confidence 489999999999854 38899999999999999985554433333 36899999977 77899999976654 578
Q ss_pred EEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhh-hcCccEEEEccccccCCc--chHHHHHHhcC--
Q 004880 232 AIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLR-HYNWKYLVVDEGHRLKNP--KCKLLKELKYI-- 306 (725)
Q Consensus 232 v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~l~-~~~~~~vIvDEaH~ikn~--~s~~~~~l~~l-- 306 (725)
+..++|...... ......+|+|+|++.+....+.... -.++++|||||+|.+.+. ...+...+..+
T Consensus 98 v~~~~G~~~~~~---------~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~ 168 (702)
T 2p6r_A 98 IGISTGDYESRD---------EHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRR 168 (702)
T ss_dssp EEEECSSCBCCS---------SCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHH
T ss_pred EEEEeCCCCcch---------hhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHh
Confidence 888888653211 1124789999999998766533111 225689999999998752 22222222222
Q ss_pred --CCCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Q 004880 307 --PIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLL 384 (725)
Q Consensus 307 --~~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~l 384 (725)
+..+.++||||+- +..+ |..|+..+...
T Consensus 169 ~~~~~~ii~lSATl~--n~~~------------------~~~~l~~~~~~------------------------------ 198 (702)
T 2p6r_A 169 MNKALRVIGLSATAP--NVTE------------------IAEWLDADYYV------------------------------ 198 (702)
T ss_dssp HCTTCEEEEEECCCT--THHH------------------HHHHTTCEEEE------------------------------
T ss_pred cCcCceEEEECCCcC--CHHH------------------HHHHhCCCccc------------------------------
Confidence 3567799999973 2333 33333210000
Q ss_pred heehhhHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhcc
Q 004880 385 RRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFS 464 (725)
Q Consensus 385 RR~k~dv~~~lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~~~~hp~l~~~~~~ 464 (725)
...-|-..+..++.... + ........ ...
T Consensus 199 -------~~~r~~~l~~~~~~~~~---------~------------~~~~~~~~-----------------------~~~ 227 (702)
T 2p6r_A 199 -------SDWRPVPLVEGVLCEGT---------L------------ELFDGAFS-----------------------TSR 227 (702)
T ss_dssp -------CCCCSSCEEEEEECSSE---------E------------EEEETTEE-----------------------EEE
T ss_pred -------CCCCCccceEEEeeCCe---------e------------eccCcchh-----------------------hhh
Confidence 00011111111110000 0 00000000 000
Q ss_pred CCCCCCchHHHHHhhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhc-------------------------
Q 004880 465 DSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEK------------------------- 519 (725)
Q Consensus 465 ~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~------------------------- 519 (725)
...+.. ++......++++||||+.....+.+...|...
T Consensus 228 -------------~~~~~~----~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 290 (702)
T 2p6r_A 228 -------------RVKFEE----LVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRK 290 (702)
T ss_dssp -------------ECCHHH----HHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHH
T ss_pred -------------hhhHHH----HHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHH
Confidence 000122 22223356889999999999888777776542
Q ss_pred -----CceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccCCCCCCCCCEEEE----eC---CCCCcchhhhHh
Q 004880 520 -----GYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCIL----YD---SDWNPQMDLQAM 587 (725)
Q Consensus 520 -----g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~----~D---~~wNp~~~~Qa~ 587 (725)
+..+..+||+++.++|..+.+.|.++ .++| |++|.+++.|||++++++||. || .|+++..+.|++
T Consensus 291 l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g--~~~v-lvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~ 367 (702)
T 2p6r_A 291 LAECVRKGAAFHHAGLLNGQRRVVEDAFRRG--NIKV-VVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMA 367 (702)
T ss_dssp HHHHHHTTCCEECTTSCHHHHHHHHHHHHTT--SCCE-EEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHH
T ss_pred HHHHHhcCeEEecCCCCHHHHHHHHHHHHCC--CCeE-EEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHh
Confidence 23567799999999999999999973 4444 999999999999999999998 77 789999999999
Q ss_pred HhhHhcCCCCceEEEEEecCCCHHH
Q 004880 588 DRCHRIGQTKPVHVYRLATAQSVEG 612 (725)
Q Consensus 588 gR~~RiGQ~k~V~Vyrli~~~TiEe 612 (725)
||++|.|+.++-.+|.+++....+.
T Consensus 368 GRaGR~g~~~~G~~~~l~~~~~~~~ 392 (702)
T 2p6r_A 368 GRAGRPGMDERGEAIIIVGKRDREI 392 (702)
T ss_dssp TTBSCTTTCSCEEEEEECCGGGHHH
T ss_pred hhcCCCCCCCCceEEEEecCccHHH
Confidence 9999999999999999998877543
No 40
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.93 E-value=2.3e-24 Score=254.24 Aligned_cols=327 Identities=18% Similarity=0.159 Sum_probs=212.5
Q ss_pred CcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHH-HHHHhCCCCCCcEEEEcCc-cHHHHHHHHHHhCC-Cc
Q 004880 154 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFL-AHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVP-SV 230 (725)
Q Consensus 154 ~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali-~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p-~~ 230 (725)
..|+|+|.+++..++ .++.+.|++.+||+|||+++...+ ..+...+ +++++++|.. +..+|.++++++.+ +.
T Consensus 29 ~~l~~~Q~~~i~~~~---~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~--~~il~i~P~r~La~q~~~~~~~~~~~g~ 103 (715)
T 2va8_A 29 KKLNPPQTEAVKKGL---LEGNRLLLTSPTGSGKTLIAEMGIISFLLKNG--GKAIYVTPLRALTNEKYLTFKDWELIGF 103 (715)
T ss_dssp CBCCHHHHHHHHTTT---TTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC--SEEEEECSCHHHHHHHHHHHGGGGGGTC
T ss_pred CCCCHHHHHHHHHHh---cCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCC--CeEEEEeCcHHHHHHHHHHHHHhhcCCC
Confidence 489999999998732 348899999999999999985444 4444343 6899999977 77899999966643 56
Q ss_pred eEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhh-hcCccEEEEccccccCC--cchHHHHHHhcCC
Q 004880 231 SAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLR-HYNWKYLVVDEGHRLKN--PKCKLLKELKYIP 307 (725)
Q Consensus 231 ~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~l~-~~~~~~vIvDEaH~ikn--~~s~~~~~l~~l~ 307 (725)
.+..++|....... .....+|+|+|++.+......... -.++++|||||+|.+.+ ....+...+..++
T Consensus 104 ~v~~~~G~~~~~~~---------~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~ 174 (715)
T 2va8_A 104 KVAMTSGDYDTDDA---------WLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK 174 (715)
T ss_dssp CEEECCSCSSSCCG---------GGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCchh---------hcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHHHHhcc
Confidence 78887876432110 113678999999998776533111 22568999999999874 2223334444555
Q ss_pred CCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhee
Q 004880 308 IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRRM 387 (725)
Q Consensus 308 ~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~ 387 (725)
..+.++|||||- |..+ |..|+..+....
T Consensus 175 ~~~ii~lSATl~--n~~~------------------~~~~l~~~~~~~-------------------------------- 202 (715)
T 2va8_A 175 RRNLLALSATIS--NYKQ------------------IAKWLGAEPVAT-------------------------------- 202 (715)
T ss_dssp TSEEEEEESCCT--THHH------------------HHHHHTCEEEEC--------------------------------
T ss_pred cCcEEEEcCCCC--CHHH------------------HHHHhCCCccCC--------------------------------
Confidence 778899999983 2333 333332110000
Q ss_pred hhhHhhcCCCceE-EEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccCC
Q 004880 388 KSDVEQMLPRKKE-IILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDS 466 (725)
Q Consensus 388 k~dv~~~lP~k~e-~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~~~~hp~l~~~~~~~~ 466 (725)
..-|-... ...+...... ... ...+.........
T Consensus 203 -----~~r~~~l~~~~~~~~~~~~--------------------------~~~-------------~~~~~~~~~~~~~- 237 (715)
T 2va8_A 203 -----NWRPVPLIEGVIYPERKKK--------------------------EYN-------------VIFKDNTTKKVHG- 237 (715)
T ss_dssp -----CCCSSCEEEEEEEECSSTT--------------------------EEE-------------EEETTSCEEEEES-
T ss_pred -----CCCCCCceEEEEecCCccc--------------------------cee-------------eecCcchhhhccc-
Confidence 00011111 1111000000 000 0000000000000
Q ss_pred CCCCchHHHHHhhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcC--------------------------
Q 004880 467 CFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKG-------------------------- 520 (725)
Q Consensus 467 ~~~~~~~~l~~~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g-------------------------- 520 (725)
...+ ..++......++++|||++.....+.+...|....
T Consensus 238 -----------~~~~----~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 302 (715)
T 2va8_A 238 -----------DDAI----IAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSD 302 (715)
T ss_dssp -----------SSHH----HHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHH
T ss_pred -----------chHH----HHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhcccc
Confidence 0112 22233333578899999999998888887776531
Q ss_pred ----------ceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccCCCCCCCCCEEEE----eC-------CCCC
Q 004880 521 ----------YEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCIL----YD-------SDWN 579 (725)
Q Consensus 521 ----------~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~----~D-------~~wN 579 (725)
..+..+||+++.++|..+.+.|.+ +.++| |++|.+++.|||++++++||. || .|++
T Consensus 303 ~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~--g~~~v-lvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s 379 (715)
T 2va8_A 303 EKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQ--RKIKV-IVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIP 379 (715)
T ss_dssp HHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHT--TCSCE-EEECGGGGGSSCCCBSEEEECCC--------------C
T ss_pred ccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHc--CCCeE-EEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCC
Confidence 348889999999999999999997 34445 999999999999999999998 99 8999
Q ss_pred cchhhhHhHhhHhcCCCCceEEEEEecCCC
Q 004880 580 PQMDLQAMDRCHRIGQTKPVHVYRLATAQS 609 (725)
Q Consensus 580 p~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~T 609 (725)
+..+.|+.|||+|.|+.++-.+|++++...
T Consensus 380 ~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 380 IMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp HHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred HHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 999999999999999999999999988765
No 41
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.93 E-value=9.7e-25 Score=257.40 Aligned_cols=322 Identities=19% Similarity=0.144 Sum_probs=217.2
Q ss_pred CcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHH-HHHHHHHHhCCCCCCcEEEEcC-ccHHHHHHHHHHhCC-Cc
Q 004880 154 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQT-IAFLAHLKGNGLHGPYLVIAPL-STLSNWVNEISRFVP-SV 230 (725)
Q Consensus 154 ~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qa-iali~~l~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p-~~ 230 (725)
..|+|||.+++..++ .++.++|++.+||+|||+++ ++++..+... .+++++++|. .+..+|.+++.++.+ +.
T Consensus 22 ~~l~~~Q~~~i~~~~---~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P~raLa~q~~~~~~~l~~~g~ 96 (720)
T 2zj8_A 22 ESFYPPQAEALKSGI---LEGKNALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVPLKALAEEKFQEFQDWEKIGL 96 (720)
T ss_dssp CBCCHHHHHHHTTTG---GGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECSSGGGHHHHHHHTGGGGGGTC
T ss_pred CCCCHHHHHHHHHHh---cCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcCcHHHHHHHHHHHHHHHhcCC
Confidence 489999999998622 34889999999999999998 4555555533 3689999996 577899999976654 67
Q ss_pred eEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhh-hcCccEEEEccccccCC--cchHHHHHHhcCC
Q 004880 231 SAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLR-HYNWKYLVVDEGHRLKN--PKCKLLKELKYIP 307 (725)
Q Consensus 231 ~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~l~-~~~~~~vIvDEaH~ikn--~~s~~~~~l~~l~ 307 (725)
.+..++|....... .....+|+|+|++.+......... -.++++|||||+|++.. ....+...+..++
T Consensus 97 ~v~~~~G~~~~~~~---------~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~ 167 (720)
T 2zj8_A 97 RVAMATGDYDSKDE---------WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHML 167 (720)
T ss_dssp CEEEECSCSSCCCG---------GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB
T ss_pred EEEEecCCCCcccc---------ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhh
Confidence 88888885432110 113678999999998766533211 22568999999999874 2233333344443
Q ss_pred -CCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhe
Q 004880 308 -IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRR 386 (725)
Q Consensus 308 -~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR 386 (725)
..+.++||||+- +.. +|..|+.... +
T Consensus 168 ~~~~ii~lSATl~--n~~------------------~~~~~l~~~~-----------------------------~---- 194 (720)
T 2zj8_A 168 GKAQIIGLSATIG--NPE------------------ELAEWLNAEL-----------------------------I---- 194 (720)
T ss_dssp TTBEEEEEECCCS--CHH------------------HHHHHTTEEE-----------------------------E----
T ss_pred cCCeEEEEcCCcC--CHH------------------HHHHHhCCcc-----------------------------c----
Confidence 567799999973 233 3333432110 0
Q ss_pred ehhhHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccCC
Q 004880 387 MKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDS 466 (725)
Q Consensus 387 ~k~dv~~~lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~~~~hp~l~~~~~~~~ 466 (725)
. ...-|-.....++.... . ....... ..
T Consensus 195 -~---~~~rp~~l~~~~~~~~~----------------------~-~~~~~~~----------------------~~--- 222 (720)
T 2zj8_A 195 -V---SDWRPVKLRRGVFYQGF----------------------V-TWEDGSI----------------------DR--- 222 (720)
T ss_dssp -E---CCCCSSEEEEEEEETTE----------------------E-EETTSCE----------------------EE---
T ss_pred -C---CCCCCCcceEEEEeCCe----------------------e-eccccch----------------------hh---
Confidence 0 00011111111111000 0 0000000 00
Q ss_pred CCCCchHHHHHhhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhc---------------------------
Q 004880 467 CFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEK--------------------------- 519 (725)
Q Consensus 467 ~~~~~~~~l~~~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~--------------------------- 519 (725)
...+...+ ......++++||||+.....+.+...|...
T Consensus 223 -----------~~~~~~~~----~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 287 (720)
T 2zj8_A 223 -----------FSSWEELV----YDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNE 287 (720)
T ss_dssp -----------CSSTTHHH----HHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHH
T ss_pred -----------hhHHHHHH----HHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchH
Confidence 01122222 223346789999999999888777776542
Q ss_pred ------CceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccCCCCCCCCCEEEE----eC----CCCCcchhhh
Q 004880 520 ------GYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCIL----YD----SDWNPQMDLQ 585 (725)
Q Consensus 520 ------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~----~D----~~wNp~~~~Q 585 (725)
...+..+||+++.++|..+.+.|.+ +.++| |++|.+++.|||++++++||. || .|+++..+.|
T Consensus 288 ~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~--g~~~v-lvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Q 364 (720)
T 2zj8_A 288 KLAKAIRGGVAFHHAGLGRDERVLVEENFRK--GIIKA-VVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQ 364 (720)
T ss_dssp HHHHHHTTTEEEECTTSCHHHHHHHHHHHHT--TSSCE-EEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHH
T ss_pred HHHHHHhcCeeeecCCCCHHHHHHHHHHHHC--CCCeE-EEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHH
Confidence 1248899999999999999999997 34445 999999999999999999998 88 6899999999
Q ss_pred HhHhhHhcCCCCceEEEEEecCCCHHH
Q 004880 586 AMDRCHRIGQTKPVHVYRLATAQSVEG 612 (725)
Q Consensus 586 a~gR~~RiGQ~k~V~Vyrli~~~TiEe 612 (725)
++|||+|.|+.++-.+|.+++....+.
T Consensus 365 r~GRaGR~g~~~~G~~~~l~~~~~~~~ 391 (720)
T 2zj8_A 365 MLGRAGRPKYDEVGEGIIVSTSDDPRE 391 (720)
T ss_dssp HHTTBCCTTTCSEEEEEEECSSSCHHH
T ss_pred HHhhcCCCCCCCCceEEEEecCccHHH
Confidence 999999999999999999999887553
No 42
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.92 E-value=4e-24 Score=257.59 Aligned_cols=386 Identities=16% Similarity=0.120 Sum_probs=228.5
Q ss_pred cCCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCc-cHHHHHHHHHHhCCCc
Q 004880 152 TGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVPSV 230 (725)
Q Consensus 152 ~~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~~ 230 (725)
.+..|+|+|.+++..+.. +.+++++.+||+|||+++...+..+... .+.+||++|.. +..||.+++.+++++.
T Consensus 36 ~~f~l~~~Q~~aI~~il~----g~~vlv~apTGsGKTlv~~~~i~~~~~~--g~~vlvl~PtraLa~Q~~~~l~~~~~~~ 109 (997)
T 4a4z_A 36 WPFELDTFQKEAVYHLEQ----GDSVFVAAHTSAGKTVVAEYAIAMAHRN--MTKTIYTSPIKALSNQKFRDFKETFDDV 109 (997)
T ss_dssp CSSCCCHHHHHHHHHHHT----TCEEEEECCTTSCSHHHHHHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHTTC--C
T ss_pred CCCCCCHHHHHHHHHHHc----CCCEEEEECCCCcHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHcCCC
Confidence 356799999999988764 7889999999999999866655555544 25799999965 7789999999999888
Q ss_pred eEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHh-hhhcCccEEEEccccccCCc--chHHHHHHhcCC
Q 004880 231 SAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKY-LRHYNWKYLVVDEGHRLKNP--KCKLLKELKYIP 307 (725)
Q Consensus 231 ~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~-l~~~~~~~vIvDEaH~ikn~--~s~~~~~l~~l~ 307 (725)
.+..++|.... .+..+|+|+|++.+.+..... ....++++|||||||++.+. .......+..++
T Consensus 110 ~v~~l~G~~~~-------------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~ 176 (997)
T 4a4z_A 110 NIGLITGDVQI-------------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLP 176 (997)
T ss_dssp CEEEECSSCEE-------------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSC
T ss_pred eEEEEeCCCcc-------------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcc
Confidence 99999886532 245789999999997765321 12235799999999998753 333444555554
Q ss_pred -CCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhe
Q 004880 308 -IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRR 386 (725)
Q Consensus 308 -~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR 386 (725)
....++|||||- +..+|..|+....... .+++.
T Consensus 177 ~~v~iIlLSAT~~--------------------n~~ef~~~l~~~~~~~-------------------------~~vi~- 210 (997)
T 4a4z_A 177 QHVKFILLSATVP--------------------NTYEFANWIGRTKQKN-------------------------IYVIS- 210 (997)
T ss_dssp TTCEEEEEECCCT--------------------THHHHHHHHHHHHTCC-------------------------EEEEE-
T ss_pred cCCCEEEEcCCCC--------------------ChHHHHHHHhcccCCc-------------------------eEEEe-
Confidence 456799999972 2234555553110000 00000
Q ss_pred ehhhHhhcCCCceEEEEEe---------cCCHHHHHHHHHHHHH---HHHHHH-------HHh---hhhc----CCcch-
Q 004880 387 MKSDVEQMLPRKKEIILYA---------TMTEHQRNFQDHLINK---TLENHL-------REK---VFSA----GRGMK- 439 (725)
Q Consensus 387 ~k~dv~~~lP~k~e~~v~~---------~ls~~q~~~y~~l~~~---~~~~~~-------~~~---~~~~----~~~~~- 439 (725)
....|...++.++. .........|...... ...... +.. .... ..+..
T Consensus 211 -----~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~ 285 (997)
T 4a4z_A 211 -----TPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRG 285 (997)
T ss_dssp -----CSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC----------------------------------
T ss_pred -----cCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccccccccccccccccccccccccccc
Confidence 00112111211111 1110111111111000 000000 000 0000 00000
Q ss_pred -hHHHHHHHHHHHhcCChhhhhhhccCCCCCCchHHHHHhhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhh
Q 004880 440 -GKLNNLMVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNE 518 (725)
Q Consensus 440 -~~l~~~l~~Lr~~~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~ 518 (725)
..-...-..-+..+..+..... .....+. .......++..+.+.+.. ....++||||......+.+..+|..
T Consensus 286 ~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~li~~l~~--~~~~~~IVF~~sr~~~e~la~~L~~ 358 (997)
T 4a4z_A 286 GRGNSTRGGANRGGSRGAGAIGS--NKRKFFT---QDGPSKKTWPEIVNYLRK--RELLPMVVFVFSKKRCEEYADWLEG 358 (997)
T ss_dssp ------------------------------------CCCCTTHHHHHHHHHHH--TTCCSEEEECSCHHHHHHHHHTTTT
T ss_pred ccccccccccccccccccccccc--ccccccc---ccccchhHHHHHHHHHHh--CCCCCEEEEECCHHHHHHHHHHHhc
Confidence 0000000000000000000000 0000000 000012344455555543 2457999999999999999998876
Q ss_pred cCc---------------------------------------eEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccc
Q 004880 519 KGY---------------------------------------EVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAG 559 (725)
Q Consensus 519 ~g~---------------------------------------~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~ag 559 (725)
.|+ .+..+||+++..+|..+++.|..+ .++| |++|.++
T Consensus 359 ~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G--~~kV-LvAT~~~ 435 (997)
T 4a4z_A 359 INFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKG--FIKV-LFATETF 435 (997)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTT--CCSE-EEECTHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCC--CCcE-EEEchHh
Confidence 555 478999999999999999999974 4444 9999999
Q ss_pred cCCCCCCCCCEEEEeCCCC---------CcchhhhHhHhhHhcCCCCceEEEEEecCCCHHHHHHHHH
Q 004880 560 GLGINLTAADTCILYDSDW---------NPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRA 618 (725)
Q Consensus 560 g~GiNL~~a~~VI~~D~~w---------Np~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TiEe~i~~~~ 618 (725)
++|||+++ .+||+++.++ ++..|.|++||++|.|+...-++|.++..+..+...+...
T Consensus 436 a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 436 AMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp HHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHH
T ss_pred hCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHH
Confidence 99999999 7777766555 9999999999999999999999999987666666555443
No 43
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.91 E-value=6.7e-23 Score=245.61 Aligned_cols=156 Identities=17% Similarity=0.165 Sum_probs=109.7
Q ss_pred cccchHHHHHHHHHHHhcC----------CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEc-CccHHHHHHHH
Q 004880 155 KLKSYQLKGVKWLISLWQN----------GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP-LSTLSNWVNEI 223 (725)
Q Consensus 155 ~Lr~yQ~~gv~~l~~~~~~----------~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P-~sll~~W~~E~ 223 (725)
.|||||..++++++..+.. +.+|++.+.||+|||++++.++..+...+...++||||| ..|..||.++|
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~f 350 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKEY 350 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHHH
Confidence 6999999999999875432 368999999999999999777654444444568999999 55889999999
Q ss_pred HHhCCCceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHh--h-hhcCccEEEEccccccCCcchHHH
Q 004880 224 SRFVPSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKY--L-RHYNWKYLVVDEGHRLKNPKCKLL 300 (725)
Q Consensus 224 ~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~--l-~~~~~~~vIvDEaH~ikn~~s~~~ 300 (725)
.+|.+.. +..+... ..+.... .....+|+|+|++.+....... + ....+.+||+||||+.... ...
T Consensus 351 ~~f~~~~---v~~~~s~--~~l~~~L----~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~--~~~ 419 (1038)
T 2w00_A 351 QRFSPDS---VNGSENT--AGLKRNL----DKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG--EAQ 419 (1038)
T ss_dssp HTTSTTC---SSSSCCC--HHHHHHH----HCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH--HHH
T ss_pred HHhcccc---cccccCH--HHHHHHh----cCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch--HHH
Confidence 9998652 1122211 1111111 0135789999999998765321 1 1226799999999997532 233
Q ss_pred HH-HhcCCCCcEEEEeccCCCC
Q 004880 301 KE-LKYIPIGNKLLLTGTPLQN 321 (725)
Q Consensus 301 ~~-l~~l~~~~rllLTgTP~~n 321 (725)
+. ...++...+++|||||...
T Consensus 420 ~~I~~~~p~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 420 KNLKKKFKRYYQFGFTGTPIFP 441 (1038)
T ss_dssp HHHHHHCSSEEEEEEESSCCCS
T ss_pred HHHHHhCCcccEEEEeCCcccc
Confidence 33 3556778899999999754
No 44
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.91 E-value=1.2e-22 Score=246.94 Aligned_cols=318 Identities=17% Similarity=0.212 Sum_probs=218.1
Q ss_pred CCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCc-cHHHHHHHHHHhC-CCc
Q 004880 153 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFV-PSV 230 (725)
Q Consensus 153 ~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~-p~~ 230 (725)
+.+++|+|..++..++. +.+.|+..+||+|||+.++..+...... ...+|||+|.. +..|+.+.+.++. .++
T Consensus 76 gf~pt~iQ~~ai~~il~----g~dvlv~ApTGSGKTl~~l~~il~~~~~--~~~~Lil~PtreLa~Q~~~~l~~l~~~~i 149 (1104)
T 4ddu_A 76 GKDLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLARK--GKKSALVFPTVTLVKQTLERLQKLADEKV 149 (1104)
T ss_dssp SSCCCHHHHHHHHHHTT----TCCEEECCSTTCCHHHHHHHHHHHHHTT--TCCEEEEESSHHHHHHHHHHHHTTSCTTS
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEeCCCCcHHHHHHHHHHHHHhc--CCeEEEEechHHHHHHHHHHHHHhhCCCC
Confidence 55899999999988865 7899999999999999766665555533 45799999977 6789999999975 456
Q ss_pred eEEEEeCChhh---HHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEccccccCCcc-----------
Q 004880 231 SAIIYHGSKKE---RDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPK----------- 296 (725)
Q Consensus 231 ~v~~~~g~~~~---r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~l~~~~~~~vIvDEaH~ikn~~----------- 296 (725)
.+..++|.... ...+.... .+..+|+|+|++.+.+.+. .+...++++|||||||++....
T Consensus 150 ~v~~l~Gg~~~~er~~~~~~l~-----~g~~~IlV~Tp~rL~~~l~-~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~g 223 (1104)
T 4ddu_A 150 KIFGFYSSMKKEEKEKFEKSFE-----EDDYHILVFSTQFVSKNRE-KLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVG 223 (1104)
T ss_dssp CEEEECTTCCTTHHHHHHHHHH-----TSCCSEEEEEHHHHHHSHH-HHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSS
T ss_pred eEEEEeCCCCHHHHHHHHHHHh-----CCCCCEEEECHHHHHHHHH-hhcccCcCEEEEeCCCccccccccchhhhHhcC
Confidence 88888887644 22222211 1357999999999977763 4555689999999999865321
Q ss_pred --hH-HHHHHhcC------------CCCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHH
Q 004880 297 --CK-LLKELKYI------------PIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKE 361 (725)
Q Consensus 297 --s~-~~~~l~~l------------~~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~ 361 (725)
.. +...+..+ .....+++||||.+..+...+ +.......
T Consensus 224 f~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~----------------~~~~l~i~---------- 277 (1104)
T 4ddu_A 224 IPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLL----------------FRDLLNFT---------- 277 (1104)
T ss_dssp CCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHH----------------HHHHTCCC----------
T ss_pred CCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHH----------------hhcceeEE----------
Confidence 11 22333322 345679999998665533211 00000000
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhheehhhHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhH
Q 004880 362 ELEEKRRGQMVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGK 441 (725)
Q Consensus 362 ~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~ 441 (725)
+.. .....+......+.+
T Consensus 278 ----------------------v~~----~~~~~~~i~~~~~~~------------------------------------ 295 (1104)
T 4ddu_A 278 ----------------------VGR----LVSVARNITHVRISS------------------------------------ 295 (1104)
T ss_dssp ----------------------CCB----CCCCCCCEEEEEESC------------------------------------
T ss_pred ----------------------ecc----CCCCcCCceeEEEec------------------------------------
Confidence 000 000011111111111
Q ss_pred HHHHHHHHHHhcCChhhhhhhccCCCCCCchHHHHHhhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCc
Q 004880 442 LNNLMVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGY 521 (725)
Q Consensus 442 l~~~l~~Lr~~~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~ 521 (725)
.|...|.+++.. .+.++||||+....++.+...|...|+
T Consensus 296 --------------------------------------~k~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~g~ 334 (1104)
T 4ddu_A 296 --------------------------------------RSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKF 334 (1104)
T ss_dssp --------------------------------------CCHHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHTTC
T ss_pred --------------------------------------CHHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhCCC
Confidence 133334444544 257899999999999999999999999
Q ss_pred eEE-EEeCCCCHHHHHHHHHHHhCCCCCceEEEEe----cccccCCCCCCC-CCEEEEeCCCC-----------------
Q 004880 522 EVC-RIDGSVRLDERKRQIQDFNDVNSSYRIFLLS----TRAGGLGINLTA-ADTCILYDSDW----------------- 578 (725)
Q Consensus 522 ~~~-~l~G~~~~~~R~~~i~~F~~~~~~~~v~Lls----t~agg~GiNL~~-a~~VI~~D~~w----------------- 578 (725)
++. .+|| +|.+ +++|+++ .+.| |++ |+++++|||+++ +++||+||+|-
T Consensus 335 ~~~~~lhg-----~rr~-l~~F~~G--~~~V-LVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~ 405 (1104)
T 4ddu_A 335 NVGETWSE-----FEKN-FEDFKVG--KINI-LIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLAR 405 (1104)
T ss_dssp CEEESSSS-----HHHH-HHHHHHT--SCSE-EEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHH
T ss_pred CeeeEecC-----cHHH-HHHHHCC--CCCE-EEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHH
Confidence 998 8998 3556 9999974 4555 777 999999999999 99999999998
Q ss_pred -------------------------------------------------------CcchhhhHhHhhHhcCC---CCceE
Q 004880 579 -------------------------------------------------------NPQMDLQAMDRCHRIGQ---TKPVH 600 (725)
Q Consensus 579 -------------------------------------------------------Np~~~~Qa~gR~~RiGQ---~k~V~ 600 (725)
++..|+||.||++|.|. ++-+-
T Consensus 406 l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Gls 485 (1104)
T 4ddu_A 406 VLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVS 485 (1104)
T ss_dssp HHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceE
Confidence 67789999999999875 33333
Q ss_pred EEEEecCCCHHHHHHHHHHHHHHHH
Q 004880 601 VYRLATAQSVEGRILKRAFSKLKLE 625 (725)
Q Consensus 601 Vyrli~~~TiEe~i~~~~~~K~~l~ 625 (725)
|. ++ + |+.++..+.++.+..
T Consensus 486 i~-~~--~--d~~~~~~l~~~~~~~ 505 (1104)
T 4ddu_A 486 VI-FE--E--DEEIFESLKTRLLLI 505 (1104)
T ss_dssp EE-EC--C--CHHHHHHHHHHHHHH
T ss_pred EE-EE--e--cHHHHHHHHHHHhhh
Confidence 32 22 2 677888777777654
No 45
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.87 E-value=1e-21 Score=238.70 Aligned_cols=317 Identities=16% Similarity=0.182 Sum_probs=204.7
Q ss_pred CCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCc-cHHHHHHHHHHhCCC--
Q 004880 153 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVPS-- 229 (725)
Q Consensus 153 ~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~-- 229 (725)
|..+ |+|.+++..++. |.+.|+..+||+|||+.++.++..+... ...+|||+|.. +..|+.+.+.++++.
T Consensus 55 g~~p-~iQ~~ai~~il~----g~dvlv~apTGSGKTl~~lp~l~~~~~~--~~~~lil~PtreLa~Q~~~~l~~l~~~~~ 127 (1054)
T 1gku_B 55 GEPR-AIQKMWAKRILR----KESFAATAPTGVGKTSFGLAMSLFLALK--GKRCYVIFPTSLLVIQAAETIRKYAEKAG 127 (1054)
T ss_dssp CSCC-HHHHHHHHHHHT----TCCEECCCCBTSCSHHHHHHHHHHHHTT--SCCEEEEESCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCH-HHHHHHHHHHHh----CCCEEEEcCCCCCHHHHHHHHHHHHhhc--CCeEEEEeccHHHHHHHHHHHHHHHhhcC
Confidence 3448 999999988875 7899999999999998666666665544 36899999977 668899999988754
Q ss_pred c----eEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEccccccCCcchHHHHHHhc
Q 004880 230 V----SAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKY 305 (725)
Q Consensus 230 ~----~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~l~~~~~~~vIvDEaH~ikn~~s~~~~~l~~ 305 (725)
+ .+..++|............. ... .+|+|+|++.+...+.. |. .+++|||||||++.+....+...+..
T Consensus 128 i~~~~~v~~~~Gg~~~~~~~~~~~~---l~~-~~IlV~TP~~L~~~l~~-L~--~l~~lViDEah~~l~~~~~~~~i~~~ 200 (1054)
T 1gku_B 128 VGTENLIGYYHGRIPKREKENFMQN---LRN-FKIVITTTQFLSKHYRE-LG--HFDFIFVDDVDAILKASKNVDKLLHL 200 (1054)
T ss_dssp CSGGGSEEECCSSCCSHHHHHHHHS---GGG-CSEEEEEHHHHHHCSTT-SC--CCSEEEESCHHHHHTSTHHHHHHHHH
T ss_pred CCccceEEEEeCCCChhhHHHHHhh---ccC-CCEEEEcHHHHHHHHHH-hc--cCCEEEEeChhhhhhccccHHHHHHH
Confidence 3 67778776543321111100 112 78999999998866532 33 67899999999987754444444443
Q ss_pred C------------CCCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHH
Q 004880 306 I------------PIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVA 373 (725)
Q Consensus 306 l------------~~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (725)
+ .....+++|||+-.. .++.. .|...+
T Consensus 201 lgf~~~~~~~~~~~~~q~~l~SAT~t~~--~~~~~--------------~~~~~~------------------------- 239 (1054)
T 1gku_B 201 LGFHYDLKTKSWVGEARGCLMVSTATAK--KGKKA--------------ELFRQL------------------------- 239 (1054)
T ss_dssp TTEEEETTTTEEEECCSSEEEECCCCSC--CCTTH--------------HHHHHH-------------------------
T ss_pred hCcchhhhhhhcccCCceEEEEecCCCc--hhHHH--------------HHhhcc-------------------------
Confidence 3 224468899887543 11100 000000
Q ss_pred HHHHhhhhhhhheehhhHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhc
Q 004880 374 KLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNC 453 (725)
Q Consensus 374 ~L~~~l~p~~lRR~k~dv~~~lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~~~ 453 (725)
+. +.+.. ....++...+ .++.
T Consensus 240 -----~~-i~v~~-----~~~~~~~i~~-~~~~----------------------------------------------- 260 (1054)
T 1gku_B 240 -----LN-FDIGS-----SRITVRNVED-VAVN----------------------------------------------- 260 (1054)
T ss_dssp -----HC-CCCSC-----CEECCCCEEE-EEES-----------------------------------------------
T ss_pred -----eE-EEccC-----cccCcCCceE-EEec-----------------------------------------------
Confidence 00 00000 0000011111 1110
Q ss_pred CChhhhhhhccCCCCCCchHHHHHhhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHH
Q 004880 454 NHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLD 533 (725)
Q Consensus 454 ~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~ 533 (725)
..|...|..++.. .+.++||||+....++.+...|... +++..+||++.
T Consensus 261 -------------------------~~k~~~L~~ll~~---~~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-- 309 (1054)
T 1gku_B 261 -------------------------DESISTLSSILEK---LGTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-- 309 (1054)
T ss_dssp -------------------------CCCTTTTHHHHTT---SCSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS--
T ss_pred -------------------------hhHHHHHHHHHhh---cCCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH--
Confidence 1122223333332 2678999999999999999999988 99999999873
Q ss_pred HHHHHHHHHhCCCCCceEEEEe----cccccCCCCCCCC-CEEEEeCCC-------------------------------
Q 004880 534 ERKRQIQDFNDVNSSYRIFLLS----TRAGGLGINLTAA-DTCILYDSD------------------------------- 577 (725)
Q Consensus 534 ~R~~~i~~F~~~~~~~~v~Lls----t~agg~GiNL~~a-~~VI~~D~~------------------------------- 577 (725)
+++++|.+ +.++| |++ |+++++|||++++ ++||+||+|
T Consensus 310 ---~~l~~F~~--G~~~V-LVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (1054)
T 1gku_B 310 ---GDYEKFVE--GEIDH-LIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIE 383 (1054)
T ss_dssp ---HHHHHHHH--TSCSE-EEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHH
T ss_pred ---HHHHHHHc--CCCcE-EEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHH
Confidence 78899997 44555 666 9999999999996 999999999
Q ss_pred ----------------------------------------CCcchhhhHhHhhHhcCCCC--ceEEEEEecCCCHHHHHH
Q 004880 578 ----------------------------------------WNPQMDLQAMDRCHRIGQTK--PVHVYRLATAQSVEGRIL 615 (725)
Q Consensus 578 ----------------------------------------wNp~~~~Qa~gR~~RiGQ~k--~V~Vyrli~~~TiEe~i~ 615 (725)
.++..|.||+||++|.|... .+.+|.+ .+ |..++
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~--~~--d~~~~ 459 (1054)
T 1gku_B 384 RLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLL--ED--DSELL 459 (1054)
T ss_dssp TTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEE--CS--CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEE--ec--CHHHH
Confidence 78999999999999988764 3444433 33 45566
Q ss_pred HHHHHHHHH
Q 004880 616 KRAFSKLKL 624 (725)
Q Consensus 616 ~~~~~K~~l 624 (725)
..+.++.+.
T Consensus 460 ~~l~~~l~~ 468 (1054)
T 1gku_B 460 SAFIERAKL 468 (1054)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 666555544
No 46
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.84 E-value=2e-20 Score=206.76 Aligned_cols=100 Identities=15% Similarity=0.181 Sum_probs=85.7
Q ss_pred CCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccCCCCCCCCCE----
Q 004880 495 RNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADT---- 570 (725)
Q Consensus 495 ~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~~---- 570 (725)
.+.++||||+.....+.+...|...|+++..+||. +|.++++.|.++ .+. +|++|.++++|||++ +++
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g--~~~-vLVaT~v~e~GiDip-~~~VI~~ 241 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSE--KWD-FVITTDISEMGANFK-ADRVIDP 241 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHS--CCS-EEEECGGGGTSCCCC-CSEEEEC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCC--CCe-EEEECchHHcCcccC-CcEEEec
Confidence 36689999999999999999999999999999997 688899999974 344 599999999999999 544
Q ss_pred -------------EEEeCCCCCcchhhhHhHhhHhcCCCCc-eEEE
Q 004880 571 -------------CILYDSDWNPQMDLQAMDRCHRIGQTKP-VHVY 602 (725)
Q Consensus 571 -------------VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~-V~Vy 602 (725)
||+++.|.++..+.|+.||++|.|.... +.+|
T Consensus 242 g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 242 RKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAY 287 (431)
T ss_dssp CEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEE
T ss_pred CccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEE
Confidence 5778999999999999999999996543 4444
No 47
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.83 E-value=1.7e-20 Score=208.67 Aligned_cols=95 Identities=16% Similarity=0.146 Sum_probs=84.7
Q ss_pred CCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccCCCCCCCCCEEEEe
Q 004880 495 RNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILY 574 (725)
Q Consensus 495 ~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~~ 574 (725)
.+.++||||+.....+.+...|...|+.+..+||.+. +++++.|+++ ... +|++|+++++|||++. +.||+|
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g--~~~-vLVaT~v~~~GiDip~-~~VI~~ 258 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLT--DWD-FVVTTDISEMGANFRA-GRVIDP 258 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSS--CCS-EEEECGGGGSSCCCCC-SEEEEC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccC--Cce-EEEECCHHHhCcCCCC-CEEEEC
Confidence 3568999999999999999999999999999999754 5789999874 344 5999999999999999 999999
Q ss_pred C--------------------CCCCcchhhhHhHhhHhcCCCC
Q 004880 575 D--------------------SDWNPQMDLQAMDRCHRIGQTK 597 (725)
Q Consensus 575 D--------------------~~wNp~~~~Qa~gR~~RiGQ~k 597 (725)
| .|.++..+.|++||++|.|...
T Consensus 259 ~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~ 301 (451)
T 2jlq_A 259 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQE 301 (451)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred CCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCC
Confidence 8 8999999999999999999733
No 48
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.82 E-value=1.5e-20 Score=209.38 Aligned_cols=105 Identities=16% Similarity=0.184 Sum_probs=87.8
Q ss_pred CCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccCCCCCCCCCEEEE-
Q 004880 495 RNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCIL- 573 (725)
Q Consensus 495 ~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~- 573 (725)
.+.++||||+.....+.+...|...|+.+..++|. +|.++++.|.++ ... +|++|+++++|||++. +.||+
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g--~~~-iLVaT~v~~~GiDip~-~~VI~~ 260 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNG--DWD-FVITTDISEMGANFGA-SRVIDC 260 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSC--CCS-EEEESSCC---CCCSC-SEEEEC
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCC--Cce-EEEECChHHhCeecCC-CEEEEC
Confidence 36789999999999999999999999999999995 678899999874 344 4999999999999999 99998
Q ss_pred -------------------eCCCCCcchhhhHhHhhHhcCCCCceEEEEEecCC
Q 004880 574 -------------------YDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQ 608 (725)
Q Consensus 574 -------------------~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~ 608 (725)
||.|.++..+.|++||++|.|.. +-..|.|++..
T Consensus 261 G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~-~G~~~~~~~~~ 313 (459)
T 2z83_A 261 RKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQ-VGDEYHYGGAT 313 (459)
T ss_dssp CEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTC-CCEEEEECSCC
T ss_pred CcccccccccccccccccccCCCCCHHHHHHhccccCCCCCC-CCeEEEEEccc
Confidence 88999999999999999999963 33455666665
No 49
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.82 E-value=1.1e-19 Score=208.61 Aligned_cols=115 Identities=16% Similarity=0.179 Sum_probs=100.4
Q ss_pred hcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEeccc
Q 004880 479 CGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRA 558 (725)
Q Consensus 479 s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~a 558 (725)
..|+..|.+.+..+...+.++||||.+....+.|...|...|+++..++|.+...+|..+...|+. +. ++|+|+.
T Consensus 415 ~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~--g~---VlIATdm 489 (844)
T 1tf5_A 415 EGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQK--GA---VTIATNM 489 (844)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTST--TC---EEEEETT
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCC--Ce---EEEeCCc
Confidence 468999999888877788999999999999999999999999999999999887666544444543 22 6999999
Q ss_pred ccCCCCCC--------CCCEEEEeCCCCCcchhhhHhHhhHhcCCCCc
Q 004880 559 GGLGINLT--------AADTCILYDSDWNPQMDLQAMDRCHRIGQTKP 598 (725)
Q Consensus 559 gg~GiNL~--------~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~ 598 (725)
+|+|+|+. +..+||.||.|-++..|.|++||++|.|.+-.
T Consensus 490 AgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~ 537 (844)
T 1tf5_A 490 AGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGI 537 (844)
T ss_dssp SSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEE
T ss_pred cccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCe
Confidence 99999999 78899999999999999999999999996544
No 50
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.82 E-value=4.8e-20 Score=204.21 Aligned_cols=102 Identities=15% Similarity=0.166 Sum_probs=80.2
Q ss_pred CCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccCCCCCCCCCEEEE-
Q 004880 495 RNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCIL- 573 (725)
Q Consensus 495 ~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~- 573 (725)
.+.++||||+.....+.+...|...|+++..+|| ++|.++++.|.++ .+. +|++|+++++|||++ +++||+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g--~~~-vLVaT~v~e~GiDip-v~~VI~~ 247 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQK--KPD-FILATDIAEMGANLC-VERVLDC 247 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------C--CCS-EEEESSSTTCCTTCC-CSEEEEC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCC--Cce-EEEECChhheeeccC-ceEEEeC
Confidence 4789999999999999999999999999999999 3688999999974 444 599999999999999 999986
Q ss_pred ------------------eCCCCCcchhhhHhHhhHhcCCCCceEEEEEe
Q 004880 574 ------------------YDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLA 605 (725)
Q Consensus 574 ------------------~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli 605 (725)
||.|.++..+.|+.||++|.|.... .+|.|+
T Consensus 248 g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g-~~~~l~ 296 (440)
T 1yks_A 248 RTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDG-DSYYYS 296 (440)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCC-EEEEEC
T ss_pred CccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCc-eEEEEe
Confidence 8999999999999999999853332 334444
No 51
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.82 E-value=1.4e-20 Score=217.45 Aligned_cols=123 Identities=15% Similarity=0.173 Sum_probs=94.9
Q ss_pred hCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccCCCCCCCCCEEEE
Q 004880 494 ARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCIL 573 (725)
Q Consensus 494 ~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~ 573 (725)
..+.++||||+.....+.+...|...|+++..+||. +|.++++.|.++ .++ +|++|+++++|||++ +++||+
T Consensus 408 ~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g--~~~-VLVaTdv~e~GIDip-v~~VI~ 479 (673)
T 2wv9_A 408 DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNG--DWD-FVITTDISEMGANFG-ASRVID 479 (673)
T ss_dssp SCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTC--CCS-EEEECGGGGTTCCCC-CSEEEE
T ss_pred hCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCC--Cce-EEEECchhhcceeeC-CcEEEE
Confidence 357899999999999999999999999999999993 799999999974 444 499999999999999 999997
Q ss_pred --------------------eCCCCCcchhhhHhHhhHhcCCCCceEEEEEecC-CCHHHHHHHHHHHHHHHH
Q 004880 574 --------------------YDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATA-QSVEGRILKRAFSKLKLE 625 (725)
Q Consensus 574 --------------------~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~-~TiEe~i~~~~~~K~~l~ 625 (725)
||.|.++..+.|++||++|.|..+. .+|.|+.. ..-|...+.....+..+.
T Consensus 480 ~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G-~ai~l~~~~~~~d~~~l~~ie~~~~l~ 551 (673)
T 2wv9_A 480 CRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIG-DEYHYGGGTSEDDTMLAHWTEAKILLD 551 (673)
T ss_dssp CCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCC-EEEEECSCCCCCCTTBHHHHHHHHHHH
T ss_pred CCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCC-EEEEEEecCChhHHHHHHHHHHHHhhh
Confidence 6788899999999999999943332 23444321 112334444444444443
No 52
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.80 E-value=3.1e-19 Score=204.90 Aligned_cols=286 Identities=13% Similarity=0.113 Sum_probs=182.9
Q ss_pred HHhcCCCCeEEEcCCCCcHHHHH-HHHHHHHHhCCCCCCcEEEEcCc-cHHHHHHHHHHhCCCceEEEEeCChhhHHHHH
Q 004880 169 SLWQNGLNGILADQMGLGKTIQT-IAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVPSVSAIIYHGSKKERDEIR 246 (725)
Q Consensus 169 ~~~~~~~~~ILademGlGKT~qa-iali~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~~~v~~~~g~~~~r~~~~ 246 (725)
....++.+.|++.+||+|||++. +.++..+... ...+||++|.. +..|+.+++. +..+. |.+...
T Consensus 181 ~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~--~~~vLvl~PtreLa~Qi~~~l~----~~~v~-~~~~~l------ 247 (618)
T 2whx_A 181 DIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR--RLRTLILAPTRVVAAEMEEALR----GLPIR-YQTPAV------ 247 (618)
T ss_dssp GGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT----TSCEE-ECCTTS------
T ss_pred HHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEcChHHHHHHHHHHhc----CCcee-Eecccc------
Confidence 33456899999999999999984 6677666654 35899999977 4566766665 22332 433221
Q ss_pred HhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEccccccCCcch--HHHHHHhcC--CCCcEEEEeccCCCCC
Q 004880 247 RKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKC--KLLKELKYI--PIGNKLLLTGTPLQNN 322 (725)
Q Consensus 247 ~~~~~~~~~~~~~vvItsye~~~~~~~~~l~~~~~~~vIvDEaH~ikn~~s--~~~~~l~~l--~~~~rllLTgTP~~n~ 322 (725)
.....+...+.++++..+.+.+.......++++|||||||++ +... .+...+..+ .....+++||||-...
T Consensus 248 ----~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~ 322 (618)
T 2whx_A 248 ----KSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGST 322 (618)
T ss_dssp ----SCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCC
T ss_pred ----eeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchhh
Confidence 011224456777888877665433322346899999999998 3222 122222222 4567899999984331
Q ss_pred hHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHHHHHHhhhhhhhheehhhHhhcCCCceEEE
Q 004880 323 LAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRRMKSDVEQMLPRKKEII 402 (725)
Q Consensus 323 ~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~lP~k~e~~ 402 (725)
. .|.. .-|... .
T Consensus 323 -~------~~~~-----------------------------------------------------------~~~~~~--~ 334 (618)
T 2whx_A 323 -D------PFPQ-----------------------------------------------------------SNSPIE--D 334 (618)
T ss_dssp -C------SSCC-----------------------------------------------------------CSSCEE--E
T ss_pred -h------hhhc-----------------------------------------------------------cCCcee--e
Confidence 1 0100 000000 0
Q ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccCCCCCCchHHHHHhhcHH
Q 004880 403 LYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKF 482 (725)
Q Consensus 403 v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~~~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~ 482 (725)
+.... |. . ..
T Consensus 335 v~~~~------------------------------------------------~~--------~-~~------------- 344 (618)
T 2whx_A 335 IEREI------------------------------------------------PE--------R-SW------------- 344 (618)
T ss_dssp EECCC------------------------------------------------CS--------S-CC-------------
T ss_pred ecccC------------------------------------------------CH--------H-HH-------------
Confidence 00000 00 0 00
Q ss_pred HHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccCC
Q 004880 483 RLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLG 562 (725)
Q Consensus 483 ~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~G 562 (725)
.. ++..+...+.++||||+.....+.+...|...|+++..+||. +|.++++.|.++ ... +|++|+++++|
T Consensus 345 ~~---ll~~l~~~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g--~~~-VLVaTdv~~rG 414 (618)
T 2whx_A 345 NT---GFDWITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLT--DWD-FVVTTDISEMG 414 (618)
T ss_dssp SS---SCHHHHHCCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHS--CCS-EEEECGGGGTT
T ss_pred HH---HHHHHHhCCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCC--CcE-EEEECcHHHcC
Confidence 00 011112346789999999999999999999999999999984 788899999874 333 59999999999
Q ss_pred CCCCCCCEE--------------------EEeCCCCCcchhhhHhHhhHhcCCCCceEEEEEecCCC-HHHHHHHHHHHH
Q 004880 563 INLTAADTC--------------------ILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQS-VEGRILKRAFSK 621 (725)
Q Consensus 563 iNL~~a~~V--------------------I~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~T-iEe~i~~~~~~K 621 (725)
||+. +++| |+||.|-++..|.||+||++|.|..+. .+|.|++..+ -|...+.....+
T Consensus 415 iDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G-~ai~l~~~~~~~d~~~l~~le~~ 492 (618)
T 2whx_A 415 ANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED-DQYVFSGDPLKNDEDHAHWTEAK 492 (618)
T ss_dssp CCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCC-EEEEECSCCCCCCTTCHHHHHHH
T ss_pred cccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCC-eEEEEccCCchhhHHHHHHHHhH
Confidence 9997 8888 777888889999999999999986443 3566665221 233344444444
Q ss_pred H
Q 004880 622 L 622 (725)
Q Consensus 622 ~ 622 (725)
.
T Consensus 493 i 493 (618)
T 2whx_A 493 M 493 (618)
T ss_dssp H
T ss_pred h
Confidence 3
No 53
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.80 E-value=5.2e-20 Score=191.96 Aligned_cols=164 Identities=14% Similarity=0.162 Sum_probs=123.5
Q ss_pred CCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcC-ccHHHHHHHHHHhCC--C
Q 004880 153 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL-STLSNWVNEISRFVP--S 229 (725)
Q Consensus 153 ~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p--~ 229 (725)
..+|+|||.+++.+++. +.++||+++||+|||+++++++..+...+ .+++|||||. .++.||.+++.+|.. .
T Consensus 111 ~~~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-~~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 111 RIEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY-EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp ECCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHHC-SSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred ccCccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 35899999999998886 46789999999999999988887766533 3589999997 588999999999964 3
Q ss_pred ceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEccccccCCcchHHHHHHhcC-CC
Q 004880 230 VSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYI-PI 308 (725)
Q Consensus 230 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~l~~~~~~~vIvDEaH~ikn~~s~~~~~l~~l-~~ 308 (725)
..+..+.|...... ......+|+|+||+.+.+.....+ .++++||+||||++.+. .....+..+ +.
T Consensus 186 ~~~~~~~~~~~~~~---------~~~~~~~I~v~T~~~l~~~~~~~~--~~~~~vIiDEaH~~~~~--~~~~il~~~~~~ 252 (282)
T 1rif_A 186 AMIKKIGGGASKDD---------KYKNDAPVVVGTWQTVVKQPKEWF--SQFGMMMNDECHLATGK--SISSIISGLNNC 252 (282)
T ss_dssp GGEEECSTTCSSTT---------CCCTTCSEEEECHHHHTTSCGGGG--GGEEEEEEETGGGCCHH--HHHHHTTTCTTC
T ss_pred ceEEEEeCCCcchh---------hhccCCcEEEEchHHHHhhHHHHH--hhCCEEEEECCccCCcc--cHHHHHHHhhcC
Confidence 45555555432211 122467899999998876532222 35799999999999854 555666776 67
Q ss_pred CcEEEEeccCCCCChHHhhhhhccccC
Q 004880 309 GNKLLLTGTPLQNNLAELWSLLHFILP 335 (725)
Q Consensus 309 ~~rllLTgTP~~n~~~el~sll~~l~p 335 (725)
.++++|||||. |...+++.+..++.|
T Consensus 253 ~~~l~lSATp~-~~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 253 MFKFGLSGSLR-DGKANIMQYVGMFGE 278 (282)
T ss_dssp CEEEEECSSCC-TTSTTHHHHHHHHCE
T ss_pred CeEEEEeCCCC-CcchHHHHHHHhcCC
Confidence 88999999995 445778888777765
No 54
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.80 E-value=3e-18 Score=196.29 Aligned_cols=116 Identities=15% Similarity=0.130 Sum_probs=102.3
Q ss_pred hhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecc
Q 004880 478 QCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTR 557 (725)
Q Consensus 478 ~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~ 557 (725)
...|+..|.+.+..+...|..|||||.+....+.|...|...|+++..++|.....+|.-+.+.|+. +. ++|+|+
T Consensus 423 ~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~--G~---VtIATn 497 (853)
T 2fsf_A 423 EAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYP--AA---VTIATN 497 (853)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTST--TC---EEEEES
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCC--Ce---EEEecc
Confidence 3569999999998887889999999999999999999999999999999999887676666677775 22 699999
Q ss_pred cccCCCCCCCC-------------------------------------CEEEEeCCCCCcchhhhHhHhhHhcCCCCc
Q 004880 558 AGGLGINLTAA-------------------------------------DTCILYDSDWNPQMDLQAMDRCHRIGQTKP 598 (725)
Q Consensus 558 agg~GiNL~~a-------------------------------------~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~ 598 (725)
.+|+|+|+... .+||.||.|-++..|.|++||++|.|.+-.
T Consensus 498 mAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~ 575 (853)
T 2fsf_A 498 MAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGS 575 (853)
T ss_dssp CCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEE
T ss_pred cccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCee
Confidence 99999999853 599999999999999999999999996544
No 55
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.79 E-value=4.1e-19 Score=170.90 Aligned_cols=123 Identities=21% Similarity=0.289 Sum_probs=110.0
Q ss_pred hhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecc
Q 004880 478 QCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTR 557 (725)
Q Consensus 478 ~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~ 557 (725)
.+.|+..|.+++... .+.++||||++...++.+...|...|+++..++|+++..+|..+++.|+++ .+. +|++|+
T Consensus 15 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g--~~~-vLvaT~ 89 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF--QRR-ILVATN 89 (172)
T ss_dssp GGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT--SCS-EEEESS
T ss_pred hHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCC--CCc-EEEECC
Confidence 356999999999865 578999999999999999999999999999999999999999999999974 444 489999
Q ss_pred cccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCCCceEEEEEecC
Q 004880 558 AGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATA 607 (725)
Q Consensus 558 agg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~ 607 (725)
++++|+|++.+++||+||+|||+..+.|++||++|.|+...+ +.|++.
T Consensus 90 ~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~ 137 (172)
T 1t5i_A 90 LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA--ITFVSD 137 (172)
T ss_dssp CCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEE--EEEECS
T ss_pred chhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEE--EEEEcC
Confidence 999999999999999999999999999999999999986544 445544
No 56
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.79 E-value=7.7e-18 Score=211.84 Aligned_cols=320 Identities=16% Similarity=0.164 Sum_probs=191.2
Q ss_pred cccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCc-cHHHHHHHHHH-hCC--Cc
Q 004880 155 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISR-FVP--SV 230 (725)
Q Consensus 155 ~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~-~~p--~~ 230 (725)
.+.|.|.+++..++ ..+.|.+++.+||+|||+++...+...+..+..+++++|+|.. +..+-.+++.+ |.+ +.
T Consensus 926 ~fnpiQ~q~~~~l~---~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~ 1002 (1724)
T 4f92_B 926 FFNPIQTQVFNTVY---NSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNK 1002 (1724)
T ss_dssp BCCHHHHHHHHHHH---SCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCHHHHHHHHHHh---cCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCC
Confidence 57789999987775 5677899999999999999754444444334456899999966 55555555543 332 56
Q ss_pred eEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-----hhhhcCccEEEEccccccCCcchHHHHH-Hh
Q 004880 231 SAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-----YLRHYNWKYLVVDEGHRLKNPKCKLLKE-LK 304 (725)
Q Consensus 231 ~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~-----~l~~~~~~~vIvDEaH~ikn~~s~~~~~-l~ 304 (725)
++..++|......... ...+|+|+|++.+....+. .+. +..+||+||+|.+.......... +.
T Consensus 1003 ~V~~ltGd~~~~~~~~---------~~~~IiV~TPEkld~llr~~~~~~~l~--~v~lvViDE~H~l~d~rg~~le~il~ 1071 (1724)
T 4f92_B 1003 KVVLLTGETSTDLKLL---------GKGNIIISTPEKWDILSRRWKQRKNVQ--NINLFVVDEVHLIGGENGPVLEVICS 1071 (1724)
T ss_dssp CEEECCSCHHHHHHHH---------HHCSEEEECHHHHHHHHTTTTTCHHHH--SCSEEEECCGGGGGSTTHHHHHHHHH
T ss_pred EEEEEECCCCcchhhc---------CCCCEEEECHHHHHHHHhCcccccccc--eeeEEEeechhhcCCCCCccHHHHHH
Confidence 7888888776543322 2468999999987443321 122 45899999999997644332221 11
Q ss_pred -------cC-CCCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHHHHH
Q 004880 305 -------YI-PIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLH 376 (725)
Q Consensus 305 -------~l-~~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 376 (725)
.+ +..+.++||||- ++..+|.+|.+........
T Consensus 1072 rl~~i~~~~~~~~riI~lSATl--------------------~N~~dla~WL~~~~~~~~~------------------- 1112 (1724)
T 4f92_B 1072 RMRYISSQIERPIRIVALSSSL--------------------SNAKDVAHWLGCSATSTFN------------------- 1112 (1724)
T ss_dssp HHHHHHHTTSSCCEEEEEESCB--------------------TTHHHHHHHHTCCSTTEEE-------------------
T ss_pred HHHHHHhhcCCCceEEEEeCCC--------------------CCHHHHHHHhCCCCCCeEE-------------------
Confidence 22 234569999993 2233455554322110000
Q ss_pred HhhhhhhhheehhhHhhcCCCceE-EEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCC
Q 004880 377 AILRPFLLRRMKSDVEQMLPRKKE-IILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNH 455 (725)
Q Consensus 377 ~~l~p~~lRR~k~dv~~~lP~k~e-~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~~~~h 455 (725)
... ..-|-.-+ ++...+.......+.. .
T Consensus 1113 ----------~~~---~~RPvpL~~~i~~~~~~~~~~~~~~-~------------------------------------- 1141 (1724)
T 4f92_B 1113 ----------FHP---NVRPVPLELHIQGFNISHTQTRLLS-M------------------------------------- 1141 (1724)
T ss_dssp ----------CCG---GGCSSCEEEEEEEECCCSHHHHHHT-T-------------------------------------
T ss_pred ----------eCC---CCCCCCeEEEEEeccCCCchhhhhh-h-------------------------------------
Confidence 000 01122222 2222222211110000 0
Q ss_pred hhhhhhhccCCCCCCchHHHHHhhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHh------------------
Q 004880 456 PDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFN------------------ 517 (725)
Q Consensus 456 p~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~------------------ 517 (725)
...+...+.. ...++.+||||..+.....+...|.
T Consensus 1142 --------------------------~~~~~~~i~~-~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~ 1194 (1724)
T 4f92_B 1142 --------------------------AKPVYHAITK-HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEK 1194 (1724)
T ss_dssp --------------------------HHHHHHHHHH-HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHH
T ss_pred --------------------------cchHHHHHHH-hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHH
Confidence 0000001111 1234556666655543332221111
Q ss_pred ----------------hcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccCCCCCCCCCEEEE----eCC-
Q 004880 518 ----------------EKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCIL----YDS- 576 (725)
Q Consensus 518 ----------------~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~----~D~- 576 (725)
.....+..+||+++..+|..+.+.|.+ +.++| |++|.+++.|||+++..+||. ||.
T Consensus 1195 ~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~--G~i~V-LvaT~tlA~GVnlPa~~VVI~~~~~~dg~ 1271 (1724)
T 4f92_B 1195 DLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSS--GAIQV-VVASRSLCWGMNVAAHLVIIMDTQYYNGK 1271 (1724)
T ss_dssp HHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHH--TSBCE-EEEEGGGSSSCCCCBSEEEEECSEEEETT
T ss_pred HHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHC--CCCeE-EEEChHHHcCCCCCccEEEEecCccccCc
Confidence 012357889999999999999999997 45555 999999999999997766662 432
Q ss_pred -----CCCcchhhhHhHhhHhcCCCCceEEEEEecCC
Q 004880 577 -----DWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQ 608 (725)
Q Consensus 577 -----~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~ 608 (725)
|.++..+.|++|||+|.|....-.++.++...
T Consensus 1272 ~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~ 1308 (1724)
T 4f92_B 1272 IHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGS 1308 (1724)
T ss_dssp TTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGG
T ss_pred ccccCCCCHHHHHHhhccccCCCCCCceEEEEEecch
Confidence 46788999999999999987776666666543
No 57
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.79 E-value=9e-19 Score=166.97 Aligned_cols=133 Identities=22% Similarity=0.359 Sum_probs=114.9
Q ss_pred hhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecc
Q 004880 478 QCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTR 557 (725)
Q Consensus 478 ~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~ 557 (725)
.+.|+..|.+++... .+.++||||++...++.+...|...|+++..+||+++..+|..+++.|+++ .+. +|++|+
T Consensus 19 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g--~~~-vlv~T~ 93 (163)
T 2hjv_A 19 EENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG--EYR-YLVATD 93 (163)
T ss_dssp GGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT--SCS-EEEECG
T ss_pred hHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC--CCe-EEEECC
Confidence 367999999999864 578999999999999999999999999999999999999999999999974 444 489999
Q ss_pred cccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCCCceEEEEEecCCCHHHHHHHHHH
Q 004880 558 AGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAF 619 (725)
Q Consensus 558 agg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TiEe~i~~~~~ 619 (725)
++++|+|++.+++||+||+||||..+.|++||++|.|++..+ +.|++.. |...+....
T Consensus 94 ~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~~--~~~~~~~i~ 151 (163)
T 2hjv_A 94 VAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKA--ISFVTAF--EKRFLADIE 151 (163)
T ss_dssp GGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEE--EEEECGG--GHHHHHHHH
T ss_pred hhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceE--EEEecHH--HHHHHHHHH
Confidence 999999999999999999999999999999999999987554 4555544 444444443
No 58
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.78 E-value=8.5e-19 Score=202.00 Aligned_cols=108 Identities=24% Similarity=0.286 Sum_probs=96.2
Q ss_pred cEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccCCCCCCCCCEEEEeCC-
Q 004880 498 KVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDS- 576 (725)
Q Consensus 498 kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~~D~- 576 (725)
..+|||.....++.+...|...|+.+..+||+++.++|..+++.|+++++.++| |++|++++.|||+ .+++||++|.
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~V-LVATdi~e~GlDi-~v~~VI~~~~~ 399 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKI-LVATDAIGMGLNL-SIRRIIFYSLI 399 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCE-EEECGGGGSSCCC-CBSEEEESCSB
T ss_pred CCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEE-EEeCcHHHCCcCc-CccEEEECCcc
Confidence 358888889999999999999999999999999999999999999974445555 9999999999999 9999999999
Q ss_pred -------------CCCcchhhhHhHhhHhcCCC-CceEEEEEecC
Q 004880 577 -------------DWNPQMDLQAMDRCHRIGQT-KPVHVYRLATA 607 (725)
Q Consensus 577 -------------~wNp~~~~Qa~gR~~RiGQ~-k~V~Vyrli~~ 607 (725)
|+++..+.|+.||++|.|+. .+-.||++...
T Consensus 400 k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 400 KPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp C-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred ccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 88999999999999999987 45678877655
No 59
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.78 E-value=3.5e-19 Score=173.39 Aligned_cols=125 Identities=19% Similarity=0.311 Sum_probs=97.3
Q ss_pred hhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecc
Q 004880 478 QCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTR 557 (725)
Q Consensus 478 ~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~ 557 (725)
.+.|+..|.+++... ..+.++||||++...++.+...|...|+.+..++|+++..+|..+++.|+++ .++ +|++|+
T Consensus 29 ~~~K~~~L~~ll~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g--~~~-vLvaT~ 104 (185)
T 2jgn_A 29 ESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG--KSP-ILVATA 104 (185)
T ss_dssp GGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT--SSS-EEEEEC
T ss_pred cHHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC--CCe-EEEEcC
Confidence 467999999999874 3578999999999999999999999999999999999999999999999974 444 589999
Q ss_pred cccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCCCceEEEEEecCC
Q 004880 558 AGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQ 608 (725)
Q Consensus 558 agg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~ 608 (725)
++++|+|++.++.||+||+|||+..+.||+||++|.|++. .++.|++..
T Consensus 105 ~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g--~~~~~~~~~ 153 (185)
T 2jgn_A 105 VAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG--LATSFFNER 153 (185)
T ss_dssp ------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCE--EEEEEECGG
T ss_pred hhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCc--EEEEEEchh
Confidence 9999999999999999999999999999999999999764 455566554
No 60
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.78 E-value=8.3e-18 Score=192.88 Aligned_cols=115 Identities=13% Similarity=0.108 Sum_probs=99.0
Q ss_pred hcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEeccc
Q 004880 479 CGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRA 558 (725)
Q Consensus 479 s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~a 558 (725)
..|+..+.+.+......|..|||||.+....+.|...|...|+++..++|.....++.-+.+.|+. +. ++|+|+.
T Consensus 443 ~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~--G~---VtIATnm 517 (922)
T 1nkt_A 443 EAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRR--GG---VTVATNM 517 (922)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTST--TC---EEEEETT
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCC--Ce---EEEecch
Confidence 358888888888777789999999999999999999999999999999999876555555566664 22 6999999
Q ss_pred ccCCCCCCCC----------------------------------------------------CEEEEeCCCCCcchhhhH
Q 004880 559 GGLGINLTAA----------------------------------------------------DTCILYDSDWNPQMDLQA 586 (725)
Q Consensus 559 gg~GiNL~~a----------------------------------------------------~~VI~~D~~wNp~~~~Qa 586 (725)
+|+|+|+... .+||.||.|-++..|.|+
T Consensus 518 AgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr 597 (922)
T 1nkt_A 518 AGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQL 597 (922)
T ss_dssp CSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHH
T ss_pred hhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHH
Confidence 9999999853 499999999999999999
Q ss_pred hHhhHhcCCCCc
Q 004880 587 MDRCHRIGQTKP 598 (725)
Q Consensus 587 ~gR~~RiGQ~k~ 598 (725)
+||++|.|..-.
T Consensus 598 ~GRTGRqGdpG~ 609 (922)
T 1nkt_A 598 RGRSGRQGDPGE 609 (922)
T ss_dssp HHTSSGGGCCEE
T ss_pred hcccccCCCCee
Confidence 999999996543
No 61
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.78 E-value=1.8e-18 Score=203.55 Aligned_cols=112 Identities=13% Similarity=0.132 Sum_probs=95.6
Q ss_pred CCCcEEEEccchhHHHHHHHHHhh-----------cCceEEEEeCCCCHHHHHHHHHHHhCC---CCCceEEEEeccccc
Q 004880 495 RNHKVLVFSQWTKILDIMEYYFNE-----------KGYEVCRIDGSVRLDERKRQIQDFNDV---NSSYRIFLLSTRAGG 560 (725)
Q Consensus 495 ~~~kvlIFsq~~~~ld~l~~~L~~-----------~g~~~~~l~G~~~~~~R~~~i~~F~~~---~~~~~v~Llst~agg 560 (725)
.+.++|||++....++.+...|.. .++.+..++|+++.++|..+++.|... ++.. -+|++|.+++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~-kVlVAT~iae 380 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGR-KVVISTNIAE 380 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCE-EEEEECTHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCce-EEEEeCcHHH
Confidence 467999999999999888888874 588999999999999999999999711 1344 4599999999
Q ss_pred CCCCCCCCCEEEEeCC------------------CCCcchhhhHhHhhHhcCCCCceEEEEEecCCCH
Q 004880 561 LGINLTAADTCILYDS------------------DWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSV 610 (725)
Q Consensus 561 ~GiNL~~a~~VI~~D~------------------~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~Ti 610 (725)
.|||++++++||.++. |.++..+.||.||++|. ++=.+|+|++....
T Consensus 381 ~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 381 TSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF 445 (773)
T ss_dssp HTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH
T ss_pred hCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHh
Confidence 9999999999999666 88999999999999997 56678888876544
No 62
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.77 E-value=3.1e-17 Score=190.13 Aligned_cols=121 Identities=17% Similarity=0.172 Sum_probs=104.7
Q ss_pred HHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccCC
Q 004880 483 RLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLG 562 (725)
Q Consensus 483 ~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~G 562 (725)
..+...+......+.++||||....+.+.|..+|...|+++..+||+++..+|.++++.|.. +.+. +|++|+++++|
T Consensus 426 ~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~--g~~~-VLvaT~~l~~G 502 (664)
T 1c4o_A 426 LDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRL--GHYD-CLVGINLLREG 502 (664)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHT--TSCS-EEEESCCCCTT
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhc--CCce-EEEccChhhcC
Confidence 33444455555678999999999999999999999999999999999999999999999987 3444 59999999999
Q ss_pred CCCCCCCEEEEeCC-----CCCcchhhhHhHhhHhcCCCCceEEEEEecCCC
Q 004880 563 INLTAADTCILYDS-----DWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQS 609 (725)
Q Consensus 563 iNL~~a~~VI~~D~-----~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~T 609 (725)
+|++.++.||++|. |+++..+.|++||++|.| +-.++.|+...+
T Consensus 503 lDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~ 551 (664)
T 1c4o_A 503 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA---RGEVWLYADRVS 551 (664)
T ss_dssp CCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST---TCEEEEECSSCC
T ss_pred ccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC---CCEEEEEEcCCC
Confidence 99999999999998 899999999999999986 335666777765
No 63
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.76 E-value=2.6e-18 Score=164.05 Aligned_cols=124 Identities=20% Similarity=0.301 Sum_probs=106.9
Q ss_pred cHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccc
Q 004880 480 GKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAG 559 (725)
Q Consensus 480 ~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~ag 559 (725)
.|+..|.+++... .+.++||||++...++.+...|...|+.+..++|+++..+|..+++.|+++ ..+ +|++|+++
T Consensus 16 ~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~-vlv~T~~~ 90 (165)
T 1fuk_A 16 YKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG--SSR-ILISTDLL 90 (165)
T ss_dssp GHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT--SCS-EEEEEGGG
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcC--CCE-EEEEcChh
Confidence 3999999999874 578999999999999999999999999999999999999999999999974 444 48999999
Q ss_pred cCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCCCceEEEEEecCCCH
Q 004880 560 GLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSV 610 (725)
Q Consensus 560 g~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~Ti 610 (725)
++|+|++.+++||+||+|||+..+.|++||++|.|+... ++.|++.+..
T Consensus 91 ~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~--~~~~~~~~~~ 139 (165)
T 1fuk_A 91 ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGV--AINFVTNEDV 139 (165)
T ss_dssp TTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CE--EEEEEETTTH
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCce--EEEEEcchHH
Confidence 999999999999999999999999999999999997654 5566777653
No 64
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.76 E-value=3.8e-18 Score=172.94 Aligned_cols=143 Identities=23% Similarity=0.320 Sum_probs=111.8
Q ss_pred cccCCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcC-ccHHHHHHHHHHhCC
Q 004880 150 LLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL-STLSNWVNEISRFVP 228 (725)
Q Consensus 150 ~~~~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p 228 (725)
...+..|+|||.+++.+++. +.++|++++||+|||+++++++..+ .+++|||||. .++.||.+++.+|
T Consensus 88 ~~~~~~l~~~Q~~ai~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~liv~P~~~L~~q~~~~~~~~-- 156 (237)
T 2fz4_A 88 FDAEISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGIF-- 156 (237)
T ss_dssp CCCCCCCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHS-----CSCEEEEESSHHHHHHHHHHHGGG--
T ss_pred ccCCCCcCHHHHHHHHHHHh----CCCEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEeCCHHHHHHHHHHHHhC--
Confidence 34467999999999988654 5569999999999999998887654 4689999998 5789999999995
Q ss_pred Cce-EEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEccccccCCcchHHHHHHhcCC
Q 004880 229 SVS-AIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIP 307 (725)
Q Consensus 229 ~~~-v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~l~~~~~~~vIvDEaH~ikn~~s~~~~~l~~l~ 307 (725)
+.. +..++|... ...+|+|+||+.+..... .+. ..|++|||||||++.+.. ..+.+..++
T Consensus 157 ~~~~v~~~~g~~~---------------~~~~i~v~T~~~l~~~~~-~~~-~~~~llIiDEaH~l~~~~--~~~i~~~~~ 217 (237)
T 2fz4_A 157 GEEYVGEFSGRIK---------------ELKPLTVSTYDSAYVNAE-KLG-NRFMLLIFDEVHHLPAES--YVQIAQMSI 217 (237)
T ss_dssp CGGGEEEESSSCB---------------CCCSEEEEEHHHHHHTHH-HHT-TTCSEEEEECSSCCCTTT--HHHHHHTCC
T ss_pred CCCeEEEEeCCCC---------------CcCCEEEEeHHHHHhhHH-Hhc-ccCCEEEEECCccCCChH--HHHHHHhcc
Confidence 456 778877653 245899999999887753 232 358999999999998754 334556678
Q ss_pred CCcEEEEeccCCCCC
Q 004880 308 IGNKLLLTGTPLQNN 322 (725)
Q Consensus 308 ~~~rllLTgTP~~n~ 322 (725)
..++|+|||||.+++
T Consensus 218 ~~~~l~LSATp~r~D 232 (237)
T 2fz4_A 218 APFRLGLTATFERED 232 (237)
T ss_dssp CSEEEEEEESCC---
T ss_pred CCEEEEEecCCCCCC
Confidence 889999999998765
No 65
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.76 E-value=2.7e-18 Score=167.96 Aligned_cols=123 Identities=22% Similarity=0.287 Sum_probs=105.8
Q ss_pred hhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecc
Q 004880 478 QCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTR 557 (725)
Q Consensus 478 ~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~ 557 (725)
...|+..|.+++.. .+.++||||++...++.+...|...|+++..++|+++..+|.++++.|+++ .+. +|++|+
T Consensus 39 ~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g--~~~-vLvaT~ 112 (191)
T 2p6n_A 39 EEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG--KKD-VLVATD 112 (191)
T ss_dssp GGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHT--SCS-EEEECH
T ss_pred hHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC--CCE-EEEEcC
Confidence 35688888777764 467999999999999999999999999999999999999999999999974 444 589999
Q ss_pred cccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCCCceEEEEEecCC
Q 004880 558 AGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQ 608 (725)
Q Consensus 558 agg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~ 608 (725)
++++|||++.+++||+||+|||+..+.||+||++|.|++.. ++.|++..
T Consensus 113 ~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~--~i~l~~~~ 161 (191)
T 2p6n_A 113 VASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGI--ATTFINKA 161 (191)
T ss_dssp HHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCE--EEEEECTT
T ss_pred chhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcE--EEEEEcCc
Confidence 99999999999999999999999999999999999998764 44566654
No 66
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.76 E-value=2.1e-17 Score=207.92 Aligned_cols=323 Identities=18% Similarity=0.177 Sum_probs=193.1
Q ss_pred CcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHH-HHHHHHHhCC--------CCCCcEEEEcCc-cHHHHHHHH
Q 004880 154 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTI-AFLAHLKGNG--------LHGPYLVIAPLS-TLSNWVNEI 223 (725)
Q Consensus 154 ~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qai-ali~~l~~~~--------~~~~~LIV~P~s-ll~~W~~E~ 223 (725)
.+|.+.|..++..++ ..+.|.+++.+||+|||+.+. +++..+.... ..+++|+|+|.. +..+-.++|
T Consensus 78 ~~ln~iQs~~~~~al---~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l 154 (1724)
T 4f92_B 78 KTLNRIQSKLYRAAL---ETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSF 154 (1724)
T ss_dssp SBCCHHHHHTHHHHH---TCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH---cCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHH
Confidence 478899999988765 568899999999999999875 4445554321 234689999965 556666777
Q ss_pred HHhCC--CceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHH-----HhhhhcCccEEEEccccccCCcc
Q 004880 224 SRFVP--SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDAR-----KYLRHYNWKYLVVDEGHRLKNPK 296 (725)
Q Consensus 224 ~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~-----~~l~~~~~~~vIvDEaH~ikn~~ 296 (725)
.+.+. ++.+..++|...... ......+|+|||++.+..-.+ ..+. ...+|||||+|.+.+..
T Consensus 155 ~~~~~~~gi~V~~~tGd~~~~~---------~~~~~~~IlVtTpEkld~llr~~~~~~~l~--~v~~vIiDEvH~l~d~R 223 (1724)
T 4f92_B 155 GKRLATYGITVAELTGDHQLCK---------EEISATQIIVCTPEKWDIITRKGGERTYTQ--LVRLIILDEIHLLHDDR 223 (1724)
T ss_dssp HHHHTTTTCCEEECCSSCSSCC---------TTGGGCSEEEECHHHHHHHTTSSTTHHHHT--TEEEEEETTGGGGGSTT
T ss_pred HHHHhhCCCEEEEEECCCCCCc---------cccCCCCEEEECHHHHHHHHcCCccchhhc--CcCEEEEecchhcCCcc
Confidence 65543 567888888653211 111357899999998633221 1222 46799999999997543
Q ss_pred hHHHH-----HH---hcC-CCCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHH
Q 004880 297 CKLLK-----EL---KYI-PIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKR 367 (725)
Q Consensus 297 s~~~~-----~l---~~l-~~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~ 367 (725)
..... .+ ... +..++|+||||- .|+.+ |..|...... .
T Consensus 224 G~~lE~~l~rl~~~~~~~~~~~riI~LSATl--~N~~d------------------vA~wL~~~~~----~--------- 270 (1724)
T 4f92_B 224 GPVLEALVARAIRNIEMTQEDVRLIGLSATL--PNYED------------------VATFLRVDPA----K--------- 270 (1724)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCEEEEEECSC--TTHHH------------------HHHHTTCCHH----H---------
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEeccc--CCHHH------------------HHHHhCCCCC----C---------
Confidence 32222 11 122 344679999993 23444 4444321000 0
Q ss_pred HHHHHHHHHHhhhhhhhheehhhHhhcCCCceE-EEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHH
Q 004880 368 RGQMVAKLHAILRPFLLRRMKSDVEQMLPRKKE-IILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLM 446 (725)
Q Consensus 368 ~~~~~~~L~~~l~p~~lRR~k~dv~~~lP~k~e-~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 446 (725)
. + +. ... ..-|-.-+ .++.+.-....+. +..+ + .
T Consensus 271 ------~----~--~~---~~~---~~RPvpL~~~~~~~~~~~~~~~-~~~~-~-----------------------~-- 305 (1724)
T 4f92_B 271 ------G----L--FY---FDN---SFRPVPLEQTYVGITEKKAIKR-FQIM-N-----------------------E-- 305 (1724)
T ss_dssp ------H----E--EE---CCG---GGCSSCEEEECCEECCCCHHHH-HHHH-H-----------------------H--
T ss_pred ------C----e--EE---ECC---CCccCccEEEEeccCCcchhhh-hHHH-H-----------------------H--
Confidence 0 0 00 000 01121111 1111111100000 0000 0 0
Q ss_pred HHHHHhcCChhhhhhhccCCCCCCchHHHHHhhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHh----h----
Q 004880 447 VQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFN----E---- 518 (725)
Q Consensus 447 ~~Lr~~~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~----~---- 518 (725)
.+...+.+ ...++.+||||.++.....+...|. .
T Consensus 306 -------------------------------------~~~~~v~~-~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~ 347 (1724)
T 4f92_B 306 -------------------------------------IVYEKIME-HAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTL 347 (1724)
T ss_dssp -------------------------------------HHHHHHTT-CCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTST
T ss_pred -------------------------------------HHHHHHHH-HhcCCcEEEECCCHHHHHHHHHHHHHHHhhccch
Confidence 00000111 1235678888887654333332221 1
Q ss_pred -----------------------------cCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccCCCCCCCCC
Q 004880 519 -----------------------------KGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAAD 569 (725)
Q Consensus 519 -----------------------------~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~ 569 (725)
....+...||+++..+|..+.+.|.+ +.++| |++|.+++.||||++.+
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~--G~i~v-lvaTsTLa~GVNlPa~~ 424 (1724)
T 4f92_B 348 GLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFAD--KHIQV-LVSTATLAWGVNLPAHT 424 (1724)
T ss_dssp TCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHT--TCCCE-EEECHHHHHHSCCCBSE
T ss_pred hhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHC--CCCeE-EEEcchhHhhCCCCCce
Confidence 12347889999999999999999997 45555 99999999999999888
Q ss_pred EEEE----eCCC------CCcchhhhHhHhhHhcCCCCceEEEEEecCCC
Q 004880 570 TCIL----YDSD------WNPQMDLQAMDRCHRIGQTKPVHVYRLATAQS 609 (725)
Q Consensus 570 ~VI~----~D~~------wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~T 609 (725)
+||. ||+. -++..+.|++|||+|.|....-.++.+...+.
T Consensus 425 vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~ 474 (1724)
T 4f92_B 425 VIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGE 474 (1724)
T ss_dssp EEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTT
T ss_pred EEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchh
Confidence 8874 7664 47889999999999999766656666666554
No 67
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.76 E-value=2.8e-19 Score=203.70 Aligned_cols=275 Identities=18% Similarity=0.152 Sum_probs=176.2
Q ss_pred cccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCc-cHHHHHHHHHHhCCCceEE
Q 004880 155 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVPSVSAI 233 (725)
Q Consensus 155 ~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~~~v~ 233 (725)
.++++|...+..+ .++.+.|+..++|+|||.+....+. .. ...+||++|.. +..|+.+.+.+.+. ..+.
T Consensus 217 P~~~~q~~i~~~L----~~~~~vlv~ApTGSGKT~a~~l~ll---~~--g~~vLVl~PTReLA~Qia~~l~~~~g-~~vg 286 (666)
T 3o8b_A 217 PVFTDNSSPPAVP----QSFQVAHLHAPTGSGKSTKVPAAYA---AQ--GYKVLVLNPSVAATLGFGAYMSKAHG-IDPN 286 (666)
T ss_dssp CSCCCCCSCCCCC----SSCEEEEEECCTTSCTTTHHHHHHH---HT--TCCEEEEESCHHHHHHHHHHHHHHHS-CCCE
T ss_pred CcHHHHHHHHHHH----HcCCeEEEEeCCchhHHHHHHHHHH---HC--CCeEEEEcchHHHHHHHHHHHHHHhC-CCee
Confidence 3456665444333 3467789999999999977654443 23 24899999987 45677777766653 3344
Q ss_pred EEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEccccccCCcch-HHHHHHhcCCC---C
Q 004880 234 IYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKC-KLLKELKYIPI---G 309 (725)
Q Consensus 234 ~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~l~~~~~~~vIvDEaH~ikn~~s-~~~~~l~~l~~---~ 309 (725)
...|... .....+|+|+|++.+..+ ..+...++++|||||||.+-.... .+...+..++. .
T Consensus 287 ~~vG~~~-------------~~~~~~IlV~TPGrLl~~--~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~ 351 (666)
T 3o8b_A 287 IRTGVRT-------------ITTGAPVTYSTYGKFLAD--GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGAR 351 (666)
T ss_dssp EECSSCE-------------ECCCCSEEEEEHHHHHHT--TSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCS
T ss_pred EEECcEe-------------ccCCCCEEEECcHHHHhC--CCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCc
Confidence 4444322 124678999999998644 334445689999999987742221 23333444432 2
Q ss_pred cEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHHHHHHhhhhhhhheehh
Q 004880 310 NKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRRMKS 389 (725)
Q Consensus 310 ~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~ 389 (725)
..+++||||-.. +..-
T Consensus 352 llil~SAT~~~~--------i~~~-------------------------------------------------------- 367 (666)
T 3o8b_A 352 LVVLATATPPGS--------VTVP-------------------------------------------------------- 367 (666)
T ss_dssp EEEEEESSCTTC--------CCCC--------------------------------------------------------
T ss_pred eEEEECCCCCcc--------cccC--------------------------------------------------------
Confidence 357789998431 0000
Q ss_pred hHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccCCCCC
Q 004880 390 DVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCFY 469 (725)
Q Consensus 390 dv~~~lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~~~~hp~l~~~~~~~~~~~ 469 (725)
.|...+. ....... . +. .....
T Consensus 368 -----~p~i~~v--~~~~~~~---------------------------i-----------------~~-~~~~~------ 389 (666)
T 3o8b_A 368 -----HPNIEEV--ALSNTGE---------------------------I-----------------PF-YGKAI------ 389 (666)
T ss_dssp -----CTTEEEE--ECBSCSS---------------------------E-----------------EE-TTEEE------
T ss_pred -----CcceEEE--eecccch---------------------------h-----------------HH-HHhhh------
Confidence 0000000 0000000 0 00 00000
Q ss_pred CchHHHHHhhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCc
Q 004880 470 PPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSY 549 (725)
Q Consensus 470 ~~~~~l~~~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~ 549 (725)
. + ....+.++|||++....++.+...|...|+++..+||+++..+ |.+ ...
T Consensus 390 -----------~-------l--~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~--~~~ 440 (666)
T 3o8b_A 390 -----------P-------I--EAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPT--IGD 440 (666)
T ss_dssp -----------C-------G--GGSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCS--SSC
T ss_pred -----------h-------h--hhccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHh--CCC
Confidence 0 0 0014689999999999999999999999999999999999754 433 222
Q ss_pred eEEEEecccccCCCCCCCCCEEE----------EeC-----------CCCCcchhhhHhHhhHhcCCCCceEEEEEecCC
Q 004880 550 RIFLLSTRAGGLGINLTAADTCI----------LYD-----------SDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQ 608 (725)
Q Consensus 550 ~v~Llst~agg~GiNL~~a~~VI----------~~D-----------~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~ 608 (725)
-+|++|+++++|||+. ++.|| +|| .|-++..|.||+||++| |..- . |.|++..
T Consensus 441 -~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G-~--i~lvt~~ 514 (666)
T 3o8b_A 441 -VVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRG-I--YRFVTPG 514 (666)
T ss_dssp -EEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCE-E--EEESCCC
T ss_pred -cEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCC-E--EEEEecc
Confidence 4699999999999996 99988 566 78888999999999999 6443 3 7888876
Q ss_pred CHH
Q 004880 609 SVE 611 (725)
Q Consensus 609 TiE 611 (725)
..+
T Consensus 515 e~~ 517 (666)
T 3o8b_A 515 ERP 517 (666)
T ss_dssp CBC
T ss_pred hhh
Confidence 533
No 68
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=160.29 Aligned_cols=123 Identities=17% Similarity=0.309 Sum_probs=105.0
Q ss_pred cHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccc
Q 004880 480 GKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAG 559 (725)
Q Consensus 480 ~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~ag 559 (725)
.|+..|.+++... .+.++||||++...++.+...|...|+.+..++|+++..+|..+++.|+++ .++ +|++|+++
T Consensus 20 ~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g--~~~-vLvaT~~~ 94 (175)
T 2rb4_A 20 DKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG--KEK-VLITTNVC 94 (175)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT--SCS-EEEECCSC
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC--CCe-EEEEecch
Confidence 4888888888754 567999999999999999999999999999999999999999999999974 444 59999999
Q ss_pred cCCCCCCCCCEEEEeCCC------CCcchhhhHhHhhHhcCCCCceEEEEEecCCC
Q 004880 560 GLGINLTAADTCILYDSD------WNPQMDLQAMDRCHRIGQTKPVHVYRLATAQS 609 (725)
Q Consensus 560 g~GiNL~~a~~VI~~D~~------wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~T 609 (725)
++|||++.+++||+||+| |++..+.||+||++|.|+. -.+|.|++.+.
T Consensus 95 ~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~ 148 (175)
T 2rb4_A 95 ARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDE 148 (175)
T ss_dssp CTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGGG
T ss_pred hcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCC--ceEEEEEccch
Confidence 999999999999999999 6678999999999999954 56677777765
No 69
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.71 E-value=4.5e-17 Score=162.10 Aligned_cols=123 Identities=20% Similarity=0.271 Sum_probs=109.8
Q ss_pred hcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEeccc
Q 004880 479 CGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRA 558 (725)
Q Consensus 479 s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~a 558 (725)
..|+..|.+++.. ..+.++||||+.....+.+...|...|+.+..+||+++..+|..+++.|+++ ..+ +|++|++
T Consensus 16 ~~k~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g--~~~-vlvaT~~ 90 (212)
T 3eaq_A 16 RGRLEVLSDLLYV--ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQG--EVR-VLVATDV 90 (212)
T ss_dssp TSHHHHHHHHHHH--HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSS--SCC-EEEECTT
T ss_pred HHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCC--CCe-EEEecCh
Confidence 5799999999985 3578999999999999999999999999999999999999999999999974 444 4999999
Q ss_pred ccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCCCceEEEEEecCC
Q 004880 559 GGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQ 608 (725)
Q Consensus 559 gg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~ 608 (725)
+++|||++.+++||+||+||++..+.||+||++|.|+.. .+|.|++..
T Consensus 91 ~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g--~~~~l~~~~ 138 (212)
T 3eaq_A 91 AARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR 138 (212)
T ss_dssp TTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--B--EEEEEECGG
T ss_pred hhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCC--eEEEEEchh
Confidence 999999999999999999999999999999999999664 566677665
No 70
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.71 E-value=1.6e-15 Score=175.73 Aligned_cols=120 Identities=20% Similarity=0.214 Sum_probs=104.4
Q ss_pred HHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccCCC
Q 004880 484 LLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGI 563 (725)
Q Consensus 484 ~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~Gi 563 (725)
.+...+......+.++||||......+.|..+|...|+++..+||+++..+|.++++.|..+ .+. +|++|+++++|+
T Consensus 433 ~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g--~~~-VLVaT~~l~~Gl 509 (661)
T 2d7d_A 433 DLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLG--KYD-VLVGINLLREGL 509 (661)
T ss_dssp HHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHT--SCS-EEEESCCCSTTC
T ss_pred HHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcC--CeE-EEEecchhhCCc
Confidence 34344555556788999999999999999999999999999999999999999999999873 444 599999999999
Q ss_pred CCCCCCEEEEeCC-----CCCcchhhhHhHhhHhcCCCCceEEEEEecCCC
Q 004880 564 NLTAADTCILYDS-----DWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQS 609 (725)
Q Consensus 564 NL~~a~~VI~~D~-----~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~T 609 (725)
|++.++.||++|. |+++..+.|++||++|. ++-.++.|++..+
T Consensus 510 Dip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~---~~G~~i~~~~~~~ 557 (661)
T 2d7d_A 510 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN---AEGRVIMYADKIT 557 (661)
T ss_dssp CCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS---TTCEEEEECSSCC
T ss_pred ccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC---CCCEEEEEEeCCC
Confidence 9999999999998 89999999999999996 3455677787776
No 71
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.55 E-value=5.7e-19 Score=169.56 Aligned_cols=118 Identities=19% Similarity=0.320 Sum_probs=106.6
Q ss_pred hcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEeccc
Q 004880 479 CGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRA 558 (725)
Q Consensus 479 s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~a 558 (725)
..|+..|.+++.. ..+.++||||++...++.+...|...|+.+..++|+++..+|..+++.|+++ .+. +|++|++
T Consensus 15 ~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g--~~~-vLvaT~~ 89 (170)
T 2yjt_D 15 EHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG--RVN-VLVATDV 89 (170)
Confidence 5688888888875 3568999999999999999999999999999999999999999999999974 344 5999999
Q ss_pred ccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCCCceEE
Q 004880 559 GGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHV 601 (725)
Q Consensus 559 gg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~V 601 (725)
+++|||++.+++||+||+|||+..+.|++||++|.|++..+.+
T Consensus 90 ~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~ 132 (170)
T 2yjt_D 90 AARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAIS 132 (170)
Confidence 9999999999999999999999999999999999998776544
No 72
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.70 E-value=1.6e-16 Score=157.30 Aligned_cols=157 Identities=18% Similarity=0.140 Sum_probs=115.6
Q ss_pred CCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHh----CCCCCCcEEEEcC-ccHHHHHHHHHHhC
Q 004880 153 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG----NGLHGPYLVIAPL-STLSNWVNEISRFV 227 (725)
Q Consensus 153 ~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~----~~~~~~~LIV~P~-sll~~W~~E~~~~~ 227 (725)
...++|||.+++.+++. +.++++..+||+|||++++..+..... .+...++||+||. .+..||.+++.+++
T Consensus 21 ~~~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 96 (207)
T 2gxq_A 21 LTTPTPIQAAALPLALE----GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVA 96 (207)
T ss_dssp CCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHcC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHh
Confidence 35899999999999875 788999999999999986655544432 2345679999998 57899999999999
Q ss_pred CCceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEccccccCC--cchHHHHHHh
Q 004880 228 PSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKN--PKCKLLKELK 304 (725)
Q Consensus 228 p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~-~l~~~~~~~vIvDEaH~ikn--~~s~~~~~l~ 304 (725)
+...+..++|............ ...+|+|+|++.+...... .+...++++||+||||++.+ ....+...+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~------~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~ 170 (207)
T 2gxq_A 97 PHLKVVAVYGGTGYGKQKEALL------RGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLS 170 (207)
T ss_dssp TTSCEEEECSSSCSHHHHHHHH------HCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHH
T ss_pred hcceEEEEECCCChHHHHHHhh------CCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHH
Confidence 8888888888664433222111 2578999999998766533 23334689999999999853 3344555555
Q ss_pred cCC-CCcEEEEeccCC
Q 004880 305 YIP-IGNKLLLTGTPL 319 (725)
Q Consensus 305 ~l~-~~~rllLTgTP~ 319 (725)
.++ ....+++||||-
T Consensus 171 ~~~~~~~~i~~SAT~~ 186 (207)
T 2gxq_A 171 ATPPSRQTLLFSATLP 186 (207)
T ss_dssp TSCTTSEEEEECSSCC
T ss_pred hCCccCeEEEEEEecC
Confidence 554 455799999983
No 73
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.69 E-value=1.8e-15 Score=170.09 Aligned_cols=116 Identities=15% Similarity=0.166 Sum_probs=99.1
Q ss_pred hhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecc
Q 004880 478 QCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTR 557 (725)
Q Consensus 478 ~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~ 557 (725)
...|+..+.+.+......|.+|||||.+....+.|...|...|+++..++|.....+|.-+...|.. +. ++|+|+
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~--g~---VtVATd 530 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQK--GM---VTIATN 530 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHST--TC---EEEEET
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCC--Ce---EEEEcc
Confidence 3569999999999887789999999999999999999999999999999998554444333444543 33 699999
Q ss_pred cccCCCCCC--------CCCEEEEeCCCCCcchhhhHhHhhHhcCCCCc
Q 004880 558 AGGLGINLT--------AADTCILYDSDWNPQMDLQAMDRCHRIGQTKP 598 (725)
Q Consensus 558 agg~GiNL~--------~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~ 598 (725)
.+|+|+|+. +..+||.||.|-++..|.|++||++|.|.+-.
T Consensus 531 mAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~ 579 (822)
T 3jux_A 531 MAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGE 579 (822)
T ss_dssp TTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCE
T ss_pred hhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCee
Confidence 999999997 66799999999999999999999999996654
No 74
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.69 E-value=3.4e-17 Score=163.02 Aligned_cols=159 Identities=16% Similarity=0.217 Sum_probs=105.9
Q ss_pred ccccCCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhC----CCCCCcEEEEcCc-cHHH-HHHH
Q 004880 149 SLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGN----GLHGPYLVIAPLS-TLSN-WVNE 222 (725)
Q Consensus 149 p~~~~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~----~~~~~~LIV~P~s-ll~~-W~~E 222 (725)
+.....+|+|||.+++.+++. +.++++.++||+|||++++.++..+... +..+++|||||.. ++.| |.++
T Consensus 27 ~~~~~~~l~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~ 102 (216)
T 3b6e_A 27 SPEPELQLRPYQMEVAQPALE----GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKE 102 (216)
T ss_dssp CCSCCCCCCHHHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHT
T ss_pred CccCCCCchHHHHHHHHHHhc----CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHH
Confidence 444567999999999998874 7889999999999999998887765432 3367899999985 6678 9999
Q ss_pred HHHhCC-CceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHh-------hhhcCccEEEEccccccCC
Q 004880 223 ISRFVP-SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKY-------LRHYNWKYLVVDEGHRLKN 294 (725)
Q Consensus 223 ~~~~~p-~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~-------l~~~~~~~vIvDEaH~ikn 294 (725)
+.+|.+ ...+..++|........... ....+|+|+||+.+...+... +...+|++|||||||++..
T Consensus 103 ~~~~~~~~~~v~~~~g~~~~~~~~~~~------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~ 176 (216)
T 3b6e_A 103 FQPFLKKWYRVIGLSGDTQLKISFPEV------VKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK 176 (216)
T ss_dssp HHHHHTTTSCEEECCC---CCCCHHHH------HHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-----
T ss_pred HHHHhccCceEEEEeCCcccchhHHhh------ccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhcc
Confidence 999865 46777777765322111110 024689999999987765321 2334689999999999964
Q ss_pred cc--hHHHHH-HhcC--------------CCCcEEEEecc
Q 004880 295 PK--CKLLKE-LKYI--------------PIGNKLLLTGT 317 (725)
Q Consensus 295 ~~--s~~~~~-l~~l--------------~~~~rllLTgT 317 (725)
.. ..+... +... +..+.|+||||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 177 EAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred CCcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 32 122111 1111 45678999998
No 75
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.68 E-value=2.8e-16 Score=157.15 Aligned_cols=159 Identities=17% Similarity=0.171 Sum_probs=114.0
Q ss_pred CcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCC-CCCcEEEEcCc-cHHHHHHHHHHhC---C
Q 004880 154 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGL-HGPYLVIAPLS-TLSNWVNEISRFV---P 228 (725)
Q Consensus 154 ~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~-~~~~LIV~P~s-ll~~W~~E~~~~~---p 228 (725)
..++|||.+++..++. +.++++.++||+|||++++..+........ ..++|||||.. +..||.+++.++. |
T Consensus 35 ~~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 110 (220)
T 1t6n_A 35 EHPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMP 110 (220)
T ss_dssp CCCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCC
Confidence 4699999999998875 788999999999999988776666554332 34899999974 7789999999986 4
Q ss_pred CceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEccccccCCc-c--hHHHHHHh
Q 004880 229 SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNP-K--CKLLKELK 304 (725)
Q Consensus 229 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~-~l~~~~~~~vIvDEaH~ikn~-~--s~~~~~l~ 304 (725)
+..+.+++|............ ....+|+|+|++.+...... .+....+++||+||||++... . ..+...+.
T Consensus 111 ~~~v~~~~g~~~~~~~~~~~~-----~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~ 185 (220)
T 1t6n_A 111 NVKVAVFFGGLSIKKDEEVLK-----KNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFR 185 (220)
T ss_dssp TCCEEEESCCSCHHHHHHHHH-----HSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHH
T ss_pred CceEEEEeCCCChHHHHHHHh-----cCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHH
Confidence 678888888754433222111 12468999999998766532 122346799999999998542 2 23333444
Q ss_pred cCC-CCcEEEEeccCCCC
Q 004880 305 YIP-IGNKLLLTGTPLQN 321 (725)
Q Consensus 305 ~l~-~~~rllLTgTP~~n 321 (725)
.++ ....+++||||-.+
T Consensus 186 ~~~~~~~~i~~SAT~~~~ 203 (220)
T 1t6n_A 186 MTPHEKQVMMFSATLSKE 203 (220)
T ss_dssp TSCSSSEEEEEESCCCTT
T ss_pred hCCCcCeEEEEEeecCHH
Confidence 444 45679999998443
No 76
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.67 E-value=4.6e-16 Score=156.88 Aligned_cols=154 Identities=20% Similarity=0.184 Sum_probs=113.7
Q ss_pred CcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHH-HHHHHHHhCCCCCCcEEEEcC-ccHHHHHHHHHHhC---C
Q 004880 154 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTI-AFLAHLKGNGLHGPYLVIAPL-STLSNWVNEISRFV---P 228 (725)
Q Consensus 154 ~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qai-ali~~l~~~~~~~~~LIV~P~-sll~~W~~E~~~~~---p 228 (725)
..++|||.+++..++. +.++|+..+||+|||++.+ .++..+...+...++|||||. .+..||.+++.++. +
T Consensus 45 ~~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 120 (230)
T 2oxc_A 45 ERPSPVQLKAIPLGRC----GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKME 120 (230)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 4699999999998865 7899999999999999854 444554444556789999997 47899999999986 3
Q ss_pred CceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEccccccCC---cchHHHHHHh
Q 004880 229 SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKN---PKCKLLKELK 304 (725)
Q Consensus 229 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~-~l~~~~~~~vIvDEaH~ikn---~~s~~~~~l~ 304 (725)
++.+.+++|........... ...+|+|+|++.+...... .+...++++||+||||++.+ ....+...+.
T Consensus 121 ~~~~~~~~g~~~~~~~~~~~-------~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~ 193 (230)
T 2oxc_A 121 GLECHVFIGGTPLSQDKTRL-------KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYS 193 (230)
T ss_dssp TCCEEEECTTSCHHHHHHHT-------TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHH
T ss_pred CceEEEEeCCCCHHHHHHhc-------cCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHH
Confidence 67888888876544332221 3578999999998776532 22334578999999999854 3344445556
Q ss_pred cCC-CCcEEEEeccC
Q 004880 305 YIP-IGNKLLLTGTP 318 (725)
Q Consensus 305 ~l~-~~~rllLTgTP 318 (725)
.++ ....+++|||+
T Consensus 194 ~~~~~~~~l~lSAT~ 208 (230)
T 2oxc_A 194 SLPASKQMLAVSATY 208 (230)
T ss_dssp HSCSSCEEEEEESCC
T ss_pred hCCCCCeEEEEEecc
Confidence 665 45679999996
No 77
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.66 E-value=6.4e-16 Score=156.38 Aligned_cols=156 Identities=19% Similarity=0.180 Sum_probs=113.7
Q ss_pred CCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHH-HHHhC----CCCCCcEEEEcC-ccHHHHHHHHHHh
Q 004880 153 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLA-HLKGN----GLHGPYLVIAPL-STLSNWVNEISRF 226 (725)
Q Consensus 153 ~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~-~l~~~----~~~~~~LIV~P~-sll~~W~~E~~~~ 226 (725)
...++|||.+++.+++. +.++|+..+||+|||++++..+. .+... ....++|||||. .+..||.+++.++
T Consensus 45 ~~~~~~~Q~~~i~~~~~----~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 120 (236)
T 2pl3_A 45 YRLVTEIQKQTIGLALQ----GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKV 120 (236)
T ss_dssp CCBCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhC----CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 35799999999999875 78999999999999998665444 33331 234579999997 5778999999999
Q ss_pred CCC--ceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHh--hhhcCccEEEEccccccCCc--chHHH
Q 004880 227 VPS--VSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKY--LRHYNWKYLVVDEGHRLKNP--KCKLL 300 (725)
Q Consensus 227 ~p~--~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~--l~~~~~~~vIvDEaH~ikn~--~s~~~ 300 (725)
.+. +.+..++|........... ...+|+|+|++.+...+... +...++++||+||||++.+. ...+.
T Consensus 121 ~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~ 193 (236)
T 2pl3_A 121 GKNHDFSAGLIIGGKDLKHEAERI-------NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMN 193 (236)
T ss_dssp TTTSSCCEEEECCC--CHHHHHHH-------TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHH
T ss_pred hCCCCeeEEEEECCCCHHHHHHhC-------CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHH
Confidence 754 6778888876544332222 35789999999997765332 33346889999999998643 34555
Q ss_pred HHHhcCC-CCcEEEEeccCC
Q 004880 301 KELKYIP-IGNKLLLTGTPL 319 (725)
Q Consensus 301 ~~l~~l~-~~~rllLTgTP~ 319 (725)
..+..++ ...++++|||+-
T Consensus 194 ~i~~~~~~~~~~l~~SAT~~ 213 (236)
T 2pl3_A 194 AVIENLPKKRQTLLFSATQT 213 (236)
T ss_dssp HHHHTSCTTSEEEEEESSCC
T ss_pred HHHHhCCCCCeEEEEEeeCC
Confidence 6666665 445799999973
No 78
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.66 E-value=6.7e-16 Score=161.21 Aligned_cols=124 Identities=19% Similarity=0.255 Sum_probs=107.6
Q ss_pred hcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEeccc
Q 004880 479 CGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRA 558 (725)
Q Consensus 479 s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~a 558 (725)
+.|+..|.+++... .+.++||||+.....+.+...|...|+.+..+||+++..+|..+++.|+++ ..+ +|++|++
T Consensus 13 ~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g--~~~-vLVaT~v 87 (300)
T 3i32_A 13 RGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQG--EVR-VLVATDV 87 (300)
T ss_dssp SSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHT--SCC-EEEECST
T ss_pred HHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcC--Cce-EEEEech
Confidence 56999999999875 388999999999999999999999999999999999999999999999974 344 5999999
Q ss_pred ccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCCCceEEEEEecCCC
Q 004880 559 GGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQS 609 (725)
Q Consensus 559 gg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~T 609 (725)
+++|||++.+++||+||+|||+..|.|++||++|.|+. -.+|.|++...
T Consensus 88 a~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~--G~~i~l~~~~e 136 (300)
T 3i32_A 88 AARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRG--GRVVLLYGPRE 136 (300)
T ss_dssp TTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-------CEEEEEECSST
T ss_pred hhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCC--ceEEEEeChHH
Confidence 99999999999999999999999999999999999976 46667777653
No 79
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.65 E-value=4.8e-16 Score=155.46 Aligned_cols=162 Identities=17% Similarity=0.088 Sum_probs=115.1
Q ss_pred CCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHH-HhCCCCCCcEEEEcCc-cHHHHHHHHHHhCC--
Q 004880 153 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLS-TLSNWVNEISRFVP-- 228 (725)
Q Consensus 153 ~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l-~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p-- 228 (725)
...++|||.+++..++. +.++++..+||+|||++++..+... ...+...++|||||.. +..||.+++.++..
T Consensus 24 ~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 99 (219)
T 1q0u_A 24 FYKPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFC 99 (219)
T ss_dssp CCSCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhc
Confidence 34799999999999886 7899999999999999865544443 3333456899999975 77899999988864
Q ss_pred ----CceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEccccccCC--cchHHHH
Q 004880 229 ----SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKN--PKCKLLK 301 (725)
Q Consensus 229 ----~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~-~l~~~~~~~vIvDEaH~ikn--~~s~~~~ 301 (725)
...+..+.|........ .......+|+|+|++.+...+.. .+....+++||+||||++.+ ....+..
T Consensus 100 ~~~~~~~~~~~~g~~~~~~~~------~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~ 173 (219)
T 1q0u_A 100 PKDRMIVARCLIGGTDKQKAL------EKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQ 173 (219)
T ss_dssp CGGGCCCEEEECCCSHHHHTT------CCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHH
T ss_pred ccccceEEEEEeCCCCHHHHH------HHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHH
Confidence 45677777766443211 11224678999999998766532 22234578999999999863 3344555
Q ss_pred HHhcCC-CCcEEEEeccCCCCChHH
Q 004880 302 ELKYIP-IGNKLLLTGTPLQNNLAE 325 (725)
Q Consensus 302 ~l~~l~-~~~rllLTgTP~~n~~~e 325 (725)
.+..++ ...++++|||+ ++.+.+
T Consensus 174 i~~~~~~~~~~l~~SAT~-~~~~~~ 197 (219)
T 1q0u_A 174 IAARMPKDLQMLVFSATI-PEKLKP 197 (219)
T ss_dssp HHHTSCTTCEEEEEESCC-CGGGHH
T ss_pred HHHhCCcccEEEEEecCC-CHHHHH
Confidence 566665 45679999997 334443
No 80
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.64 E-value=1.2e-15 Score=150.80 Aligned_cols=155 Identities=17% Similarity=0.137 Sum_probs=113.4
Q ss_pred CcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHh-CCCCCCcEEEEcCc-cHHHHHHHHHHhCC---
Q 004880 154 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG-NGLHGPYLVIAPLS-TLSNWVNEISRFVP--- 228 (725)
Q Consensus 154 ~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~-~~~~~~~LIV~P~s-ll~~W~~E~~~~~p--- 228 (725)
..++|||.+++..++. +.++++..+||+|||++++..+..... .....++||+||.. +..||.+++.++..
T Consensus 24 ~~~~~~Q~~~i~~~~~----~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 99 (206)
T 1vec_A 24 EKPSPIQEESIPIALS----GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG 99 (206)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSS
T ss_pred CCCCHHHHHHHHHHcc----CCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 4799999999998875 789999999999999887655544433 33345799999975 67899999988863
Q ss_pred CceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEccccccCCc--chHHHHHHhc
Q 004880 229 SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNP--KCKLLKELKY 305 (725)
Q Consensus 229 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~-~l~~~~~~~vIvDEaH~ikn~--~s~~~~~l~~ 305 (725)
+..+..++|........... ....+|+|+|++.+...... .+...++++||+||||++... ...+...+..
T Consensus 100 ~~~~~~~~g~~~~~~~~~~~------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~ 173 (206)
T 1vec_A 100 GAKVMATTGGTNLRDDIMRL------DDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILT 173 (206)
T ss_dssp SCCEEEECSSSCHHHHHHHT------TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHH
T ss_pred CceEEEEeCCccHHHHHHhc------CCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHh
Confidence 66788888876554443322 24678999999998766532 122336789999999998643 3334444555
Q ss_pred CC-CCcEEEEeccC
Q 004880 306 IP-IGNKLLLTGTP 318 (725)
Q Consensus 306 l~-~~~rllLTgTP 318 (725)
++ ....+++|||+
T Consensus 174 ~~~~~~~l~~SAT~ 187 (206)
T 1vec_A 174 LPKNRQILLYSATF 187 (206)
T ss_dssp SCTTCEEEEEESCC
T ss_pred CCccceEEEEEeeC
Confidence 54 56779999998
No 81
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.64 E-value=1.6e-15 Score=154.88 Aligned_cols=157 Identities=20% Similarity=0.160 Sum_probs=114.5
Q ss_pred CCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHH-HHHHhCCCCCCcEEEEcCc-cHHHHHHHHHHhCC--
Q 004880 153 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFL-AHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVP-- 228 (725)
Q Consensus 153 ~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali-~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p-- 228 (725)
...++|||.+++..++. +.++++..+||+|||++++..+ ..+.......++||+||.. +..||.+++.++..
T Consensus 63 ~~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~ 138 (249)
T 3ber_A 63 WTKPTKIQIEAIPLALQ----GRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSI 138 (249)
T ss_dssp CCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHhC----CCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 35899999999998875 7899999999999999865444 4455554456799999975 67899999999864
Q ss_pred CceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH--hhhhcCccEEEEccccccCC--cchHHHHHHh
Q 004880 229 SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK--YLRHYNWKYLVVDEGHRLKN--PKCKLLKELK 304 (725)
Q Consensus 229 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~--~l~~~~~~~vIvDEaH~ikn--~~s~~~~~l~ 304 (725)
++.+.++.|............ ...+|+|+|++.+...+.. .+....+++||+||||++.+ ....+...+.
T Consensus 139 ~~~~~~~~g~~~~~~~~~~~~------~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~ 212 (249)
T 3ber_A 139 GVQSAVIVGGIDSMSQSLALA------KKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 212 (249)
T ss_dssp TCCEEEECTTSCHHHHHHHHH------TCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHH
T ss_pred CeeEEEEECCCChHHHHHHhc------CCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHH
Confidence 567777777654433222211 3678999999998776532 22334578999999999864 3344555566
Q ss_pred cCC-CCcEEEEeccCC
Q 004880 305 YIP-IGNKLLLTGTPL 319 (725)
Q Consensus 305 ~l~-~~~rllLTgTP~ 319 (725)
.++ ....+++|||+-
T Consensus 213 ~~~~~~~~l~~SAT~~ 228 (249)
T 3ber_A 213 VIPRDRKTFLFSATMT 228 (249)
T ss_dssp SSCSSSEEEEEESSCC
T ss_pred hCCCCCeEEEEeccCC
Confidence 664 456799999973
No 82
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.64 E-value=1e-15 Score=153.48 Aligned_cols=155 Identities=17% Similarity=0.181 Sum_probs=108.7
Q ss_pred CcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHH-HHHHHHHHhCCCCCCcEEEEcCc-cHHHHHHHHHHhCC--C
Q 004880 154 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQT-IAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVP--S 229 (725)
Q Consensus 154 ~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qa-iali~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p--~ 229 (725)
..++|||.+++..++. +.++++..+||+|||+++ +.++..+.......++||+||.. +..||.+++.++.+ +
T Consensus 35 ~~~~~~Q~~~i~~~~~----~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 110 (224)
T 1qde_A 35 EEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD 110 (224)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCcHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccC
Confidence 4799999999998875 788999999999999984 44555554444556899999975 67899999999875 4
Q ss_pred ceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEccccccCC--cchHHHHHHhcC
Q 004880 230 VSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKN--PKCKLLKELKYI 306 (725)
Q Consensus 230 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~-~l~~~~~~~vIvDEaH~ikn--~~s~~~~~l~~l 306 (725)
..+..++|.......... ....+|+|+|++.+...+.. .+...++++||+||||++.+ ....+...+..+
T Consensus 111 ~~~~~~~g~~~~~~~~~~-------~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~ 183 (224)
T 1qde_A 111 IKVHACIGGTSFVEDAEG-------LRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLL 183 (224)
T ss_dssp CCEEEECC-----------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHS
T ss_pred ceEEEEeCCcchHHHHhc-------CCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhC
Confidence 677777776543322111 12478999999998766532 22234579999999999853 334455555555
Q ss_pred C-CCcEEEEeccCC
Q 004880 307 P-IGNKLLLTGTPL 319 (725)
Q Consensus 307 ~-~~~rllLTgTP~ 319 (725)
+ ....+++|||+-
T Consensus 184 ~~~~~~i~lSAT~~ 197 (224)
T 1qde_A 184 PPTTQVVLLSATMP 197 (224)
T ss_dssp CTTCEEEEEESSCC
T ss_pred CccCeEEEEEeecC
Confidence 4 445799999983
No 83
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.60 E-value=4.5e-15 Score=151.80 Aligned_cols=155 Identities=17% Similarity=0.204 Sum_probs=110.1
Q ss_pred CcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHH-HHhCC---------CCCCcEEEEcCc-cHHHHHHH
Q 004880 154 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAH-LKGNG---------LHGPYLVIAPLS-TLSNWVNE 222 (725)
Q Consensus 154 ~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~-l~~~~---------~~~~~LIV~P~s-ll~~W~~E 222 (725)
..++|||.+++..++. +.++++..+||+|||+.++..+.. +...+ ...++|||||.. +..||.++
T Consensus 44 ~~~~~~Q~~~i~~i~~----~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 119 (253)
T 1wrb_A 44 QRPTPIQKNAIPAILE----HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSE 119 (253)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHH
Confidence 4799999999998875 788999999999999986655544 33221 235799999975 77999999
Q ss_pred HHHhCC--CceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHh-hhhcCccEEEEccccccCCc--ch
Q 004880 223 ISRFVP--SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKY-LRHYNWKYLVVDEGHRLKNP--KC 297 (725)
Q Consensus 223 ~~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~-l~~~~~~~vIvDEaH~ikn~--~s 297 (725)
+.++.. ...+..++|........... ....+|+|+|++.+...+... +....+++||+||||++.+. ..
T Consensus 120 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~ 193 (253)
T 1wrb_A 120 SQKFSLNTPLRSCVVYGGADTHSQIREV------QMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEP 193 (253)
T ss_dssp HHHHHTTSSCCEEEECSSSCSHHHHHHH------SSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHH
T ss_pred HHHHhccCCceEEEEECCCCHHHHHHHh------CCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHH
Confidence 999864 35667777765444333222 136789999999987765321 22235689999999998532 34
Q ss_pred HHHHHHhcC--C---CCcEEEEeccC
Q 004880 298 KLLKELKYI--P---IGNKLLLTGTP 318 (725)
Q Consensus 298 ~~~~~l~~l--~---~~~rllLTgTP 318 (725)
.+...+..+ . ....+++||||
T Consensus 194 ~~~~i~~~~~~~~~~~~q~l~~SAT~ 219 (253)
T 1wrb_A 194 QIRKIIEESNMPSGINRQTLMFSATF 219 (253)
T ss_dssp HHHHHHHSSCCCCGGGCEEEEEESSC
T ss_pred HHHHHHhhccCCCCCCcEEEEEEEeC
Confidence 455555543 2 34579999997
No 84
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.59 E-value=4.2e-15 Score=150.58 Aligned_cols=157 Identities=20% Similarity=0.151 Sum_probs=108.3
Q ss_pred CcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHh-CCCCCCcEEEEcCc-cHHHHHHHHHHhCC--C
Q 004880 154 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG-NGLHGPYLVIAPLS-TLSNWVNEISRFVP--S 229 (725)
Q Consensus 154 ~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~-~~~~~~~LIV~P~s-ll~~W~~E~~~~~p--~ 229 (725)
..++|||.+++..++. +.++|+..+||+|||++++..+..... .....++|||||.. +..||.+++.++.. +
T Consensus 51 ~~~~~~Q~~ai~~i~~----~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 126 (237)
T 3bor_A 51 EKPSAIQQRAIIPCIK----GYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMG 126 (237)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcC
Confidence 4699999999998875 788999999999999986555544433 33456899999975 77899999999975 4
Q ss_pred ceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEccccccC--CcchHHHHHHhcC
Q 004880 230 VSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLK--NPKCKLLKELKYI 306 (725)
Q Consensus 230 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~-~l~~~~~~~vIvDEaH~ik--n~~s~~~~~l~~l 306 (725)
..+..+.|.......... ......+|+|+|++.+...+.. .+....+++||+||||++. +....+...+..+
T Consensus 127 ~~~~~~~g~~~~~~~~~~-----l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~ 201 (237)
T 3bor_A 127 ATCHACIGGTNVRNEMQK-----LQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKL 201 (237)
T ss_dssp CCEEEECC------------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHS
T ss_pred ceEEEEECCCchHHHHHH-----HhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhC
Confidence 566666665543322111 1123478999999998766532 2333457999999999884 3445566666666
Q ss_pred C-CCcEEEEeccCC
Q 004880 307 P-IGNKLLLTGTPL 319 (725)
Q Consensus 307 ~-~~~rllLTgTP~ 319 (725)
+ ....+++|||+-
T Consensus 202 ~~~~~~i~~SAT~~ 215 (237)
T 3bor_A 202 NTSIQVVLLSATMP 215 (237)
T ss_dssp CTTCEEEEECSSCC
T ss_pred CCCCeEEEEEEecC
Confidence 5 445699999983
No 85
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.55 E-value=2.4e-14 Score=143.93 Aligned_cols=155 Identities=17% Similarity=0.156 Sum_probs=107.0
Q ss_pred CcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhC-------CCCCCcEEEEcCc-cHHHHHHHHHH
Q 004880 154 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGN-------GLHGPYLVIAPLS-TLSNWVNEISR 225 (725)
Q Consensus 154 ~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~-------~~~~~~LIV~P~s-ll~~W~~E~~~ 225 (725)
.+++|||.+++..++. +.++++..+||+|||+.++..+...... .....+|||+|.. +..||.+++.+
T Consensus 41 ~~~~~~Q~~~i~~~~~----~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 116 (228)
T 3iuy_A 41 LKPTPIQSQAWPIILQ----GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSK 116 (228)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHH
Confidence 4899999999998874 7899999999999999866544333221 2445789999976 67899999999
Q ss_pred hC-CCceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEccccccCCc--chHHHH
Q 004880 226 FV-PSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNP--KCKLLK 301 (725)
Q Consensus 226 ~~-p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~-~l~~~~~~~vIvDEaH~ikn~--~s~~~~ 301 (725)
+. ++..+..++|........... ....+|+|+|++.+...... .+...++++||+||||++.+. ...+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~ 190 (228)
T 3iuy_A 117 YSYKGLKSICIYGGRNRNGQIEDI------SKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRK 190 (228)
T ss_dssp HCCTTCCEEEECC------CHHHH------HSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHH
T ss_pred hcccCceEEEEECCCChHHHHHHh------cCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHH
Confidence 85 466777777765433222111 13578999999998765432 122335789999999997643 344555
Q ss_pred HHhcCC-CCcEEEEeccC
Q 004880 302 ELKYIP-IGNKLLLTGTP 318 (725)
Q Consensus 302 ~l~~l~-~~~rllLTgTP 318 (725)
.+..++ ....+++|||.
T Consensus 191 i~~~~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 191 ILLDVRPDRQTVMTSATW 208 (228)
T ss_dssp HHHHSCSSCEEEEEESCC
T ss_pred HHHhCCcCCeEEEEEeeC
Confidence 556665 45568999995
No 86
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.53 E-value=1e-13 Score=140.95 Aligned_cols=156 Identities=18% Similarity=0.169 Sum_probs=107.6
Q ss_pred CcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHH-HHHhC-CCCCCcEEEEcCc-cHHHHHHHHHHhCCC-
Q 004880 154 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLA-HLKGN-GLHGPYLVIAPLS-TLSNWVNEISRFVPS- 229 (725)
Q Consensus 154 ~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~-~l~~~-~~~~~~LIV~P~s-ll~~W~~E~~~~~p~- 229 (725)
..++|||.+++..++. +.++++..+||+|||+.++..+. .+... ....++|||+|.. +..||.+++.+++..
T Consensus 50 ~~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 125 (245)
T 3dkp_A 50 QMPTPIQMQAIPVMLH----GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGT 125 (245)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 4699999999988775 78899999999999998654444 44322 2334799999976 778999999999763
Q ss_pred -ceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHh---hhhcCccEEEEccccccCC-----cchHHH
Q 004880 230 -VSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKY---LRHYNWKYLVVDEGHRLKN-----PKCKLL 300 (725)
Q Consensus 230 -~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~---l~~~~~~~vIvDEaH~ikn-----~~s~~~ 300 (725)
..+..++|..... ...........+|+|+|++.+...+... +...++++||+||||++.. ....+.
T Consensus 126 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~ 200 (245)
T 3dkp_A 126 GFRIHMIHKAAVAA-----KKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLA 200 (245)
T ss_dssp CCCEECCCHHHHHH-----TTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHH
T ss_pred CceEEEEecCccHH-----HHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHH
Confidence 4455544433221 1122223457899999999997765332 2233578999999999853 223344
Q ss_pred HHHhcC--CCCcEEEEeccC
Q 004880 301 KELKYI--PIGNKLLLTGTP 318 (725)
Q Consensus 301 ~~l~~l--~~~~rllLTgTP 318 (725)
..+..+ ...+.+++|||+
T Consensus 201 ~i~~~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 201 SIFLACTSHKVRRAMFSATF 220 (245)
T ss_dssp HHHHHCCCTTCEEEEEESSC
T ss_pred HHHHhcCCCCcEEEEEeccC
Confidence 444444 345679999997
No 87
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.52 E-value=6.6e-14 Score=143.98 Aligned_cols=156 Identities=17% Similarity=0.214 Sum_probs=109.9
Q ss_pred CcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHH-HHHHhC----CCCCCcEEEEcCc-cHHHHHHHHHHhC
Q 004880 154 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFL-AHLKGN----GLHGPYLVIAPLS-TLSNWVNEISRFV 227 (725)
Q Consensus 154 ~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali-~~l~~~----~~~~~~LIV~P~s-ll~~W~~E~~~~~ 227 (725)
.+++|+|.+++..++. +.++|+..++|+|||+.++..+ ..+... .....+|||+|.. +..||.+++.+++
T Consensus 75 ~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 150 (262)
T 3ly5_A 75 TNMTEIQHKSIRPLLE----GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELM 150 (262)
T ss_dssp CBCCHHHHHHHHHHHH----TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhC----CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 4699999999988876 7889999999999999865444 344331 1345799999975 7789999999987
Q ss_pred CC--ceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHh--hhhcCccEEEEccccccCC--cchHHHH
Q 004880 228 PS--VSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKY--LRHYNWKYLVVDEGHRLKN--PKCKLLK 301 (725)
Q Consensus 228 p~--~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~--l~~~~~~~vIvDEaH~ikn--~~s~~~~ 301 (725)
.. ..+..+.|............ ...+|+|+|++.+....... +.-.++++||+||||++-. ....+..
T Consensus 151 ~~~~~~~~~~~g~~~~~~~~~~~~------~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~ 224 (262)
T 3ly5_A 151 THHVHTYGLIMGGSNRSAEAQKLG------NGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQ 224 (262)
T ss_dssp TTCCSCEEEECSSSCHHHHHHHHH------HCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHH
T ss_pred hhcCceEEEEECCCCHHHHHHHhc------CCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHH
Confidence 53 45666666554333322211 24789999999987765321 2233578999999999754 3344455
Q ss_pred HHhcCC-CCcEEEEeccCC
Q 004880 302 ELKYIP-IGNKLLLTGTPL 319 (725)
Q Consensus 302 ~l~~l~-~~~rllLTgTP~ 319 (725)
.+..++ ....+++|||+-
T Consensus 225 i~~~~~~~~q~l~~SAT~~ 243 (262)
T 3ly5_A 225 IIKLLPTRRQTMLFSATQT 243 (262)
T ss_dssp HHHHSCSSSEEEEECSSCC
T ss_pred HHHhCCCCCeEEEEEecCC
Confidence 555664 455799999973
No 88
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.51 E-value=1.6e-13 Score=139.40 Aligned_cols=155 Identities=19% Similarity=0.186 Sum_probs=109.2
Q ss_pred CcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHH-HHHHhC-----CCCCCcEEEEcCc-cHHHHHHHHHHh
Q 004880 154 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFL-AHLKGN-----GLHGPYLVIAPLS-TLSNWVNEISRF 226 (725)
Q Consensus 154 ~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali-~~l~~~-----~~~~~~LIV~P~s-ll~~W~~E~~~~ 226 (725)
..++|||.+++..++. |.++++..+||+|||+..+..+ ..+... +....+|||||.. +..||.+.+.++
T Consensus 50 ~~~~~~Q~~~i~~~~~----g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 125 (242)
T 3fe2_A 50 TEPTAIQAQGWPVALS----GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEY 125 (242)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHH
Confidence 4699999999998876 8899999999999999965444 444422 2345689999976 668898888887
Q ss_pred CC--CceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEccccccCC--cchHHHH
Q 004880 227 VP--SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKN--PKCKLLK 301 (725)
Q Consensus 227 ~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~-~l~~~~~~~vIvDEaH~ikn--~~s~~~~ 301 (725)
.. +..+..++|............ ...+|+|+|++.+...+.. .+...++++||+||||++-. ....+..
T Consensus 126 ~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~ 199 (242)
T 3fe2_A 126 CRACRLKSTCIYGGAPKGPQIRDLE------RGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRK 199 (242)
T ss_dssp HHHTTCCEEEECTTSCHHHHHHHHH------HCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHH
T ss_pred HhhcCceEEEEECCCChHHHHHHhc------CCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHH
Confidence 42 567777777654433322211 2478999999998776532 12233578999999999754 3344455
Q ss_pred HHhcCC-CCcEEEEeccC
Q 004880 302 ELKYIP-IGNKLLLTGTP 318 (725)
Q Consensus 302 ~l~~l~-~~~rllLTgTP 318 (725)
.+..++ ....+++|||+
T Consensus 200 i~~~~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 200 IVDQIRPDRQTLMWSATW 217 (242)
T ss_dssp HHTTSCSSCEEEEEESCC
T ss_pred HHHhCCccceEEEEEeec
Confidence 555553 45579999996
No 89
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.40 E-value=1e-11 Score=140.79 Aligned_cols=134 Identities=17% Similarity=0.153 Sum_probs=83.6
Q ss_pred CCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCc-cHHHHHHHHHHhCCCce
Q 004880 153 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVPSVS 231 (725)
Q Consensus 153 ~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~~~ 231 (725)
+..+||+|.+.+.-+...+.++.++++..+||+|||+..+..+.. . .++++|++|+. +..||.+++.++. .+
T Consensus 5 ~~~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~--~---~~~~~~~~~t~~l~~q~~~~~~~l~--~~ 77 (540)
T 2vl7_A 5 KLQLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQ--L---KKKVLIFTRTHSQLDSIYKNAKLLG--LK 77 (540)
T ss_dssp ----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHH--H---TCEEEEEESCHHHHHHHHHHHGGGT--CC
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHh--C---CCcEEEEcCCHHHHHHHHHHHHhcC--Cc
Confidence 458999999998877777778899999999999999876544322 2 36899999976 6788999998852 34
Q ss_pred EEEEeCChhh---------HH-----------------------HHHHh---------cCCCCCCCCCCEEEecHHHHHH
Q 004880 232 AIIYHGSKKE---------RD-----------------------EIRRK---------HMPRAIGPKFPIVVTSYEVALS 270 (725)
Q Consensus 232 v~~~~g~~~~---------r~-----------------------~~~~~---------~~~~~~~~~~~vvItsye~~~~ 270 (725)
+.+..|...- .. .+... ...+......+|||++|..+..
T Consensus 78 ~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~ 157 (540)
T 2vl7_A 78 TGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQ 157 (540)
T ss_dssp EEEC---------------------------------------------------------CTTGGGCSEEEEETHHHHS
T ss_pred EEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcC
Confidence 4443332210 00 00000 0001112356999999999987
Q ss_pred HHH-Hhhh-------hcCccEEEEccccccC
Q 004880 271 DAR-KYLR-------HYNWKYLVVDEGHRLK 293 (725)
Q Consensus 271 ~~~-~~l~-------~~~~~~vIvDEaH~ik 293 (725)
+.. ..+. .....++||||||++-
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 158 KPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp HHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred HHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 542 2221 2346799999999993
No 90
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.39 E-value=3e-11 Score=138.49 Aligned_cols=142 Identities=18% Similarity=0.177 Sum_probs=93.3
Q ss_pred cCCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccH----HHHHHHHHHhC
Q 004880 152 TGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTL----SNWVNEISRFV 227 (725)
Q Consensus 152 ~~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll----~~W~~E~~~~~ 227 (725)
.|..++|-|..|+.-++. |. |....||.|||+++...+....-.| ..++||||+..| .+|...+-+++
T Consensus 76 lG~~Pt~VQ~~~ip~Llq----G~--IaeakTGeGKTLvf~Lp~~L~aL~G--~qv~VvTPTreLA~Qdae~m~~l~~~l 147 (997)
T 2ipc_A 76 LGMRHFDVQLIGGAVLHE----GK--IAEMKTGEGKTLVATLAVALNALTG--KGVHVVTVNDYLARRDAEWMGPVYRGL 147 (997)
T ss_dssp TCCCCCHHHHHHHHHHHT----TS--EEECCSTHHHHHHHHHHHHHHHTTC--SCCEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred hCCCCcHHHHhhcccccC----Cc--eeeccCCCchHHHHHHHHHHHHHhC--CCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 355788999999987763 43 8889999999998654332111222 479999998866 34888888877
Q ss_pred CCceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHH-HHHHHhh-------hhc---CccEEEEccccccCCcc
Q 004880 228 PSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVAL-SDARKYL-------RHY---NWKYLVVDEGHRLKNPK 296 (725)
Q Consensus 228 p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~-~~~~~~l-------~~~---~~~~vIvDEaH~ikn~~ 296 (725)
++.+.+..|+......... ...+|+|.|+..+. ..++..+ ... +..++||||+|.+.-..
T Consensus 148 -GLsv~~i~Gg~~~~~r~~a--------y~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDe 218 (997)
T 2ipc_A 148 -GLSVGVIQHASTPAERRKA--------YLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDE 218 (997)
T ss_dssp -TCCEEECCTTCCHHHHHHH--------HTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSS
T ss_pred -CCeEEEEeCCCCHHHHHHH--------cCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhC
Confidence 5667666665432221111 14689999999883 3333321 222 56899999999653211
Q ss_pred hHHHHHHhcCCCCcEEEEeccCCCCC
Q 004880 297 CKLLKELKYIPIGNKLLLTGTPLQNN 322 (725)
Q Consensus 297 s~~~~~l~~l~~~~rllLTgTP~~n~ 322 (725)
+..-+++|| |.+..
T Consensus 219 -----------artPLIISg-p~~~~ 232 (997)
T 2ipc_A 219 -----------ARTPLIISG-PAEKA 232 (997)
T ss_dssp -----------TTSCEEEEE-SCSSC
T ss_pred -----------CCCCeeeeC-CCccc
Confidence 223389999 88776
No 91
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.37 E-value=2.1e-12 Score=135.42 Aligned_cols=155 Identities=18% Similarity=0.169 Sum_probs=106.4
Q ss_pred CCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHH-HHHHHHHhCCCCCCcEEEEcCc-cHHHHHHHHHHhC---
Q 004880 153 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTI-AFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFV--- 227 (725)
Q Consensus 153 ~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qai-ali~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~--- 227 (725)
...++|+|..++..++. ..+.+.|+..++|+|||+..+ .++..+...+....+|||||.. +..|+.+.+.++.
T Consensus 112 ~~~pt~iQ~~ai~~il~--~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~ 189 (300)
T 3fmo_B 112 FNRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFY 189 (300)
T ss_dssp CCSCCHHHHHHHHHHTS--SSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCHHHHHHHHHHHc--CCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhC
Confidence 45799999999988764 123789999999999999865 4444444444444799999977 6678877777764
Q ss_pred CCceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH--hhhhcCccEEEEccccccCC---cchHHHHH
Q 004880 228 PSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK--YLRHYNWKYLVVDEGHRLKN---PKCKLLKE 302 (725)
Q Consensus 228 p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~--~l~~~~~~~vIvDEaH~ikn---~~s~~~~~ 302 (725)
+.+.+..+.|..... .......+|+|+|++.+...+.. .+...+.++|||||||++-. ........
T Consensus 190 ~~~~~~~~~~~~~~~---------~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i 260 (300)
T 3fmo_B 190 PELKLAYAVRGNKLE---------RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRI 260 (300)
T ss_dssp TTCCEEEESTTCCCC---------TTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHH
T ss_pred CCcEEEEEeCCccHh---------hhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHH
Confidence 567777777654321 11124668999999998766522 22333578999999999753 22233334
Q ss_pred HhcCC-CCcEEEEeccC
Q 004880 303 LKYIP-IGNKLLLTGTP 318 (725)
Q Consensus 303 l~~l~-~~~rllLTgTP 318 (725)
+..++ ....+++|||+
T Consensus 261 ~~~~~~~~q~i~~SAT~ 277 (300)
T 3fmo_B 261 QRMLPRNCQMLLFSATF 277 (300)
T ss_dssp HTTSCTTCEEEEEESCC
T ss_pred HHhCCCCCEEEEEeccC
Confidence 44443 34578999997
No 92
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.89 E-value=3.7e-09 Score=106.43 Aligned_cols=149 Identities=18% Similarity=0.116 Sum_probs=92.9
Q ss_pred CcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHH-HHHHhCCC--CCCcEEEEcCccH-HHHHHHHHHhCCC
Q 004880 154 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFL-AHLKGNGL--HGPYLVIAPLSTL-SNWVNEISRFVPS 229 (725)
Q Consensus 154 ~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali-~~l~~~~~--~~~~LIV~P~sll-~~W~~E~~~~~p~ 229 (725)
..+++||.+++..+.. |...++..++|+|||.+...++ ......+. ...+++++|...+ .+..+.+...+..
T Consensus 60 ~p~~~~q~~~i~~i~~----g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 60 LPVKKFESEILEAISQ----NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp SGGGGGHHHHHHHHHH----CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred CChHHHHHHHHHHHhc----CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 4688999999998876 7889999999999997654444 33443332 3367888997644 4555666655421
Q ss_pred ---ceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcccccc-CCcch---HHHHH
Q 004880 230 ---VSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRL-KNPKC---KLLKE 302 (725)
Q Consensus 230 ---~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~l~~~~~~~vIvDEaH~i-kn~~s---~~~~~ 302 (725)
..+. +.-.. . ........+|+|+|++.+.+.+...+ .++++||+||||+. -+.+. .+...
T Consensus 136 ~~~~~~g-~~~~~-~---------~~~~~~~~~Ivv~Tpg~l~~~l~~~l--~~~~~lVlDEah~~~~~~~~~~~~l~~i 202 (235)
T 3llm_A 136 EPGKSCG-YSVRF-E---------SILPRPHASIMFCTVGVLLRKLEAGI--RGISHVIVDEIHERDINTDFLLVVLRDV 202 (235)
T ss_dssp CTTSSEE-EEETT-E---------EECCCSSSEEEEEEHHHHHHHHHHCC--TTCCEEEECCTTSCCHHHHHHHHHHHHH
T ss_pred ccCceEE-Eeech-h---------hccCCCCCeEEEECHHHHHHHHHhhh--cCCcEEEEECCccCCcchHHHHHHHHHH
Confidence 1111 11000 0 00111457899999999887765433 35689999999984 22221 12222
Q ss_pred HhcCCCCcEEEEeccCC
Q 004880 303 LKYIPIGNKLLLTGTPL 319 (725)
Q Consensus 303 l~~l~~~~rllLTgTP~ 319 (725)
+...+....+++|||+-
T Consensus 203 ~~~~~~~~~il~SAT~~ 219 (235)
T 3llm_A 203 VQAYPEVRIVLMSATID 219 (235)
T ss_dssp HHHCTTSEEEEEECSSC
T ss_pred HhhCCCCeEEEEecCCC
Confidence 23334566799999974
No 93
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.79 E-value=1.2e-08 Score=116.05 Aligned_cols=136 Identities=15% Similarity=0.190 Sum_probs=92.5
Q ss_pred CcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCc-cHHHHHHHHHHhCC--Cc
Q 004880 154 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVP--SV 230 (725)
Q Consensus 154 ~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p--~~ 230 (725)
..+||||.+.+..+...+.++.++++...||+|||+..+..+.. ...+++|++|+. +..||.+++.++.. ++
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~-----~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~ 76 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE-----VKPKVLFVVRTHNEFYPIYRDLTKIREKRNI 76 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH-----HCSEEEEEESSGGGHHHHHHHHTTCCCSSCC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh-----CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCc
Confidence 47899999999887777778899999999999999987654443 235899999977 66889999988743 46
Q ss_pred eEEEEeCChhh--------------------------------HHHHHH--------hcC-----CCCCCCCCCEEEecH
Q 004880 231 SAIIYHGSKKE--------------------------------RDEIRR--------KHM-----PRAIGPKFPIVVTSY 265 (725)
Q Consensus 231 ~v~~~~g~~~~--------------------------------r~~~~~--------~~~-----~~~~~~~~~vvItsy 265 (725)
++.++.|...- ...... ... .+......+|||++|
T Consensus 77 ~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~ 156 (551)
T 3crv_A 77 TFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTY 156 (551)
T ss_dssp CEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEET
T ss_pred cEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCc
Confidence 66666653210 000000 000 000112569999999
Q ss_pred HHHHHHHHH-hhh-hcCccEEEEccccccCC
Q 004880 266 EVALSDARK-YLR-HYNWKYLVVDEGHRLKN 294 (725)
Q Consensus 266 e~~~~~~~~-~l~-~~~~~~vIvDEaH~ikn 294 (725)
..+..+... .+. .....+|||||||++-+
T Consensus 157 ~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 157 PYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred hHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 999876421 111 13557899999999966
No 94
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.12 E-value=4.6e-06 Score=95.67 Aligned_cols=81 Identities=21% Similarity=0.264 Sum_probs=60.2
Q ss_pred cccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHH-HHHHHhCCCCCCcEEEEcCc-cHHHHHHHHHHhC--CCc
Q 004880 155 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAF-LAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFV--PSV 230 (725)
Q Consensus 155 ~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaial-i~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~--p~~ 230 (725)
++||+|.+.+..+.....++.++++..+||+|||+..+.. +.++... ..+++|++|+. +..|+.+++.++. ..+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~kvli~t~T~~l~~Qi~~el~~l~~~~~~ 80 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KLKVLYLVRTNSQEEQVIKELRSLSSTMKI 80 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CCeEEEECCCHHHHHHHHHHHHHHhhccCe
Confidence 5799999999888777778999999999999999987654 3444333 25899999977 6688999987763 245
Q ss_pred eEEEEeC
Q 004880 231 SAIIYHG 237 (725)
Q Consensus 231 ~v~~~~g 237 (725)
++.++.|
T Consensus 81 ~~~~l~g 87 (620)
T 4a15_A 81 RAIPMQG 87 (620)
T ss_dssp CEEECCC
T ss_pred EEEEEEC
Confidence 5555544
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.44 E-value=0.00023 Score=82.28 Aligned_cols=71 Identities=21% Similarity=0.236 Sum_probs=56.3
Q ss_pred cCCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCc-cHHHHHHHHHHhC
Q 004880 152 TGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFV 227 (725)
Q Consensus 152 ~~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~ 227 (725)
....|-+.|.++|..++. ...-.||.-+.|+|||.+.+.++.++...+ .++||++|++ .+++....+....
T Consensus 186 ~~~~LN~~Q~~AV~~al~---~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~--~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 186 FNTCLDTSQKEAVLFALS---QKELAIIHGPPGTGKTTTVVEIILQAVKQG--LKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp SSTTCCHHHHHHHHHHHH---CSSEEEEECCTTSCHHHHHHHHHHHHHHTT--CCEEEEESSHHHHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHhc---CCCceEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEcCchHHHHHHHHHHHhcC
Confidence 345788999999998875 222368888999999999999999988865 5899999977 5677777776653
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.34 E-value=0.00075 Score=77.48 Aligned_cols=154 Identities=19% Similarity=0.327 Sum_probs=92.5
Q ss_pred CcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCcc-HHHHHHHHHHhCCCceE
Q 004880 154 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLST-LSNWVNEISRFVPSVSA 232 (725)
Q Consensus 154 ~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sl-l~~W~~E~~~~~p~~~v 232 (725)
..|-+.|.+++..++. +...+|.-..|+|||.++..++.++... ...++||++|... +.+....+.+.. .++
T Consensus 179 ~~ln~~Q~~av~~~l~----~~~~li~GppGTGKT~~~~~~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~~--~~~ 251 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQTG--LKV 251 (624)
T ss_dssp CCCCHHHHHHHHHHHT----CSEEEEECCTTSCHHHHHHHHHHHHHTS-SSCCEEEEESSHHHHHHHHHHHHTTT--CCE
T ss_pred CCCCHHHHHHHHHHhc----CCCeEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCcHHHHHHHHHHHHhcC--CeE
Confidence 3688999999988763 4456888899999999998888887753 3468999999874 455555555432 233
Q ss_pred EEEeCChhh-----------HHH---------HHHhc-CC----------------------CCCCCCCCEEEecHHHHH
Q 004880 233 IIYHGSKKE-----------RDE---------IRRKH-MP----------------------RAIGPKFPIVVTSYEVAL 269 (725)
Q Consensus 233 ~~~~g~~~~-----------r~~---------~~~~~-~~----------------------~~~~~~~~vvItsye~~~ 269 (725)
+-+.+...+ ... +.... +. .......+||++|...+.
T Consensus 252 ~R~~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~~ 331 (624)
T 2gk6_A 252 VRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAG 331 (624)
T ss_dssp EECCCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGGG
T ss_pred EeeccccchhhccchhhhhHHHHHHhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhhc
Confidence 322221100 000 00000 00 000123567776654432
Q ss_pred HHHHHhhhhcCccEEEEccccccCCcchHHHHHHhcCCCCcEEEEeccCCCC
Q 004880 270 SDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIGNKLLLTGTPLQN 321 (725)
Q Consensus 270 ~~~~~~l~~~~~~~vIvDEaH~ikn~~s~~~~~l~~l~~~~rllLTgTP~~n 321 (725)
. ..+....|++||||||..+..+.+ +.. .+....+++|-|=|.|-
T Consensus 332 ~---~~l~~~~fd~viIDEAsQ~~e~~~-li~---l~~~~~~~ilvGD~~QL 376 (624)
T 2gk6_A 332 D---PRLAKMQFRSILIDESTQATEPEC-MVP---VVLGAKQLILVGDHCQL 376 (624)
T ss_dssp C---GGGTTCCCSEEEETTGGGSCHHHH-HHH---HTTTBSEEEEEECTTSC
T ss_pred c---hhhhcCCCCEEEEecccccCcHHH-HHH---HHhcCCeEEEecChhcc
Confidence 1 235567899999999977765432 222 22345689999999774
No 97
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.31 E-value=0.0009 Score=73.87 Aligned_cols=144 Identities=15% Similarity=0.090 Sum_probs=85.0
Q ss_pred CCcccchHHHHHHHHHHHhcCCC-CeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHHHHHHHHHHhCCCce
Q 004880 153 GGKLKSYQLKGVKWLISLWQNGL-NGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVS 231 (725)
Q Consensus 153 ~~~Lr~yQ~~gv~~l~~~~~~~~-~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~ 231 (725)
-..|-+-|.+++..++.....+. ..+|--..|+|||..+.+++.++...+. .++++++|+.....-..+ .. ...
T Consensus 23 ~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~-~~il~~a~T~~Aa~~l~~---~~-~~~ 97 (459)
T 3upu_A 23 FDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGE-TGIILAAPTHAAKKILSK---LS-GKE 97 (459)
T ss_dssp SSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTC-CCEEEEESSHHHHHHHHH---HH-SSC
T ss_pred cccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC-ceEEEecCcHHHHHHHHh---hh-ccc
Confidence 45799999999998876554444 6788899999999999999999887654 579999998754332222 11 111
Q ss_pred EEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEccccccCCcchHHHHHHhcCCCCcE
Q 004880 232 AIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIGNK 311 (725)
Q Consensus 232 v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~l~~~~~~~vIvDEaH~ikn~~s~~~~~l~~l~~~~r 311 (725)
+..+|. .+ ... .. .......+... ..-....+++|||||+|.+.. ..+...+..+....+
T Consensus 98 ~~T~h~------~~-~~~-~~-~~~~~~~~~~~---------~~~~~~~~~~iiiDE~~~~~~--~~~~~l~~~~~~~~~ 157 (459)
T 3upu_A 98 ASTIHS------IL-KIN-PV-TYEENVLFEQK---------EVPDLAKCRVLICDEVSMYDR--KLFKILLSTIPPWCT 157 (459)
T ss_dssp EEEHHH------HH-TEE-EE-ECSSCEEEEEC---------SCCCCSSCSEEEESCGGGCCH--HHHHHHHHHSCTTCE
T ss_pred hhhHHH------Hh-ccC-cc-cccccchhccc---------ccccccCCCEEEEECchhCCH--HHHHHHHHhccCCCE
Confidence 111110 00 000 00 00000001000 001123578999999998742 233333444556788
Q ss_pred EEEeccCCCC
Q 004880 312 LLLTGTPLQN 321 (725)
Q Consensus 312 llLTgTP~~n 321 (725)
+++.|-|-|.
T Consensus 158 ~~~vGD~~Ql 167 (459)
T 3upu_A 158 IIGIGDNKQI 167 (459)
T ss_dssp EEEEECTTSC
T ss_pred EEEECCHHHc
Confidence 9999998773
No 98
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.29 E-value=0.0012 Score=74.87 Aligned_cols=132 Identities=22% Similarity=0.205 Sum_probs=85.8
Q ss_pred CCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHHHHHHHHHHhCCCceE
Q 004880 153 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSA 232 (725)
Q Consensus 153 ~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~v 232 (725)
+..|-+.|..++..+.. +...+|.-..|+|||.++.+++..+...+ .+++++||+........+... ...
T Consensus 187 ~~~L~~~Q~~Av~~~~~----~~~~~I~G~pGTGKTt~i~~l~~~l~~~g--~~Vl~~ApT~~Aa~~L~e~~~----~~a 256 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAG----HRLVVLTGGPGTGKSTTTKAVADLAESLG--LEVGLCAPTGKAARRLGEVTG----RTA 256 (574)
T ss_dssp TTTCCHHHHHHHHHHTT----CSEEEEECCTTSCHHHHHHHHHHHHHHTT--CCEEEEESSHHHHHHHHHHHT----SCE
T ss_pred cCCCCHHHHHHHHHHHh----CCEEEEEcCCCCCHHHHHHHHHHHHHhcC--CeEEEecCcHHHHHHhHhhhc----ccH
Confidence 56788999999988863 56678899999999999888888777654 689999998866655544221 111
Q ss_pred EEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEccccccCCcchHHHHHHhcCCCCcEE
Q 004880 233 IIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIGNKL 312 (725)
Q Consensus 233 ~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~l~~~~~~~vIvDEaH~ikn~~s~~~~~l~~l~~~~rl 312 (725)
..+|. . +... + . . +. ...-...++++|||||+|.+-. ..+...+..++...++
T Consensus 257 ~Tih~----------l-l~~~--~--~----~---~~---~~~~~~~~~dvlIIDEasml~~--~~~~~Ll~~~~~~~~l 309 (574)
T 3e1s_A 257 STVHR----------L-LGYG--P--Q----G---FR---HNHLEPAPYDLLIVDEVSMMGD--ALMLSLLAAVPPGARV 309 (574)
T ss_dssp EEHHH----------H-TTEE--T--T----E---ES---CSSSSCCSCSEEEECCGGGCCH--HHHHHHHTTSCTTCEE
T ss_pred HHHHH----------H-HcCC--c--c----h---hh---hhhcccccCCEEEEcCccCCCH--HHHHHHHHhCcCCCEE
Confidence 11000 0 0000 0 0 0 00 0001223679999999999853 2344556667778899
Q ss_pred EEeccCCCC
Q 004880 313 LLTGTPLQN 321 (725)
Q Consensus 313 lLTgTP~~n 321 (725)
+|.|-|-|.
T Consensus 310 ilvGD~~QL 318 (574)
T 3e1s_A 310 LLVGDTDQL 318 (574)
T ss_dssp EEEECTTSC
T ss_pred EEEeccccc
Confidence 999999874
No 99
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.09 E-value=0.0017 Score=74.11 Aligned_cols=150 Identities=14% Similarity=0.147 Sum_probs=82.9
Q ss_pred cchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhC--CCCCCcEEEEcCccHHHH-HHHHHHhCCCceEE
Q 004880 157 KSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGN--GLHGPYLVIAPLSTLSNW-VNEISRFVPSVSAI 233 (725)
Q Consensus 157 r~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~--~~~~~~LIV~P~sll~~W-~~E~~~~~p~~~v~ 233 (725)
-+.|..++..++. +...++.-..|+|||.++..++..+... +...++++++|+...... .+.+..+...+.+
T Consensus 151 ~~~Q~~Ai~~~l~----~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l- 225 (608)
T 1w36_D 151 INWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPL- 225 (608)
T ss_dssp CCHHHHHHHHHHT----BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSC-
T ss_pred CHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCC-
Confidence 5889999987763 6678999999999998887777777642 334589999998755443 3333322100000
Q ss_pred EEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEccccccCCcchHHHHHHhcCCCCcEEE
Q 004880 234 IYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIGNKLL 313 (725)
Q Consensus 234 ~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~l~~~~~~~vIvDEaH~ikn~~s~~~~~l~~l~~~~rll 313 (725)
... .+ ...+.....-..++-.+.....-. .......++++||||||+.+. ...+...+..++...+++
T Consensus 226 --~~~--~~-----~~~~~~~~Tih~ll~~~~~~~~~~-~~~~~~l~~d~lIIDEAsml~--~~~~~~Ll~~l~~~~~li 293 (608)
T 1w36_D 226 --TDE--QK-----KRIPEDASTLHRLLGAQPGSQRLR-HHAGNPLHLDVLVVDEASMID--LPMMSRLIDALPDHARVI 293 (608)
T ss_dssp --CSC--CC-----CSCSCCCBTTTSCC------------CTTSCCSCSEEEECSGGGCB--HHHHHHHHHTCCTTCEEE
T ss_pred --CHH--HH-----hccchhhhhhHhhhccCCCchHHH-hccCCCCCCCEEEEechhhCC--HHHHHHHHHhCCCCCEEE
Confidence 000 00 000000000001111111100000 001122368999999999774 234455667778888999
Q ss_pred EeccCCCCCh
Q 004880 314 LTGTPLQNNL 323 (725)
Q Consensus 314 LTgTP~~n~~ 323 (725)
|.|-|-|--.
T Consensus 294 LvGD~~QL~~ 303 (608)
T 1w36_D 294 FLGDRDQLAS 303 (608)
T ss_dssp EEECTTSGGG
T ss_pred EEcchhhcCC
Confidence 9999877544
No 100
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.06 E-value=0.0036 Score=61.67 Aligned_cols=113 Identities=21% Similarity=0.207 Sum_probs=64.5
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHHHHHHHHHHhCCCceEEEEeCChhhHHHHHHhcCCCC
Q 004880 174 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMPRA 253 (725)
Q Consensus 174 ~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~ 253 (725)
|.-.++.-+||.|||..++.++..+...+ .+++++.|.-- + +-....... .|-
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g--~kVli~~~~~d--~--r~~~~i~sr------lG~--------------- 64 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYAD--VKYLVFKPKID--T--RSIRNIQSR------TGT--------------- 64 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCC--G--GGCSSCCCC------CCC---------------
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcC--CEEEEEEeccC--c--hHHHHHHHh------cCC---------------
Confidence 33347788999999999999988887764 47888887431 1 100000000 000
Q ss_pred CCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEccccccCCcchHHHHHHhcCCCCcEEEEecc
Q 004880 254 IGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIGNKLLLTGT 317 (725)
Q Consensus 254 ~~~~~~vvItsye~~~~~~~~~l~~~~~~~vIvDEaH~ikn~~s~~~~~l~~l~~~~rllLTgT 317 (725)
....+-+.+.+.+...+...+...++++|||||+|.+....-.....+.. ..-.+++||-
T Consensus 65 --~~~~~~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~--~gi~Vil~Gl 124 (223)
T 2b8t_A 65 --SLPSVEVESAPEILNYIMSNSFNDETKVIGIDEVQFFDDRICEVANILAE--NGFVVIISGL 124 (223)
T ss_dssp --SSCCEEESSTHHHHHHHHSTTSCTTCCEEEECSGGGSCTHHHHHHHHHHH--TTCEEEEECC
T ss_pred --CccccccCCHHHHHHHHHHHhhCCCCCEEEEecCccCcHHHHHHHHHHHh--CCCeEEEEec
Confidence 01123344444444433333334468999999999976432223333333 2567899996
No 101
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.0015 Score=76.76 Aligned_cols=153 Identities=19% Similarity=0.283 Sum_probs=91.6
Q ss_pred CcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCcc-HHHHHHHHHHhCCCceE
Q 004880 154 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLST-LSNWVNEISRFVPSVSA 232 (725)
Q Consensus 154 ~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sl-l~~W~~E~~~~~p~~~v 232 (725)
..|-+.|.++|..++. +.-.++--..|+|||.++..++.++... ...++||++|... +.+....+.+.. ..+
T Consensus 359 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~~i~~~i~~l~~~-~~~~ILv~a~tn~A~d~l~~rL~~~g--~~i 431 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLSKI-HKDRILVCAPSNVAVDHLAAKLRDLG--LKV 431 (802)
T ss_dssp CCCCHHHHHHHHHHTT----CSEEEEECSTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSHHHHHHHHHHHHHTT--CCE
T ss_pred ccCCHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHHHhC-CCCeEEEEcCcHHHHHHHHHHHHhhC--ccE
Confidence 4688999999988763 4446888999999999988888877652 2368999999874 456666666542 233
Q ss_pred EEEeCChhh-----------HHHHHH--------------h--cC---------------CCCCCCCCCEEEecHHHHHH
Q 004880 233 IIYHGSKKE-----------RDEIRR--------------K--HM---------------PRAIGPKFPIVVTSYEVALS 270 (725)
Q Consensus 233 ~~~~g~~~~-----------r~~~~~--------------~--~~---------------~~~~~~~~~vvItsye~~~~ 270 (725)
+-+...... ...++. . .+ ........+||++|...+..
T Consensus 432 lR~g~~~r~~i~~~~~~~tl~~~~~~~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~ 511 (802)
T 2xzl_A 432 VRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGD 511 (802)
T ss_dssp EECCCGGGTTSCCTTGGGBHHHHHHTTCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETTGGGC
T ss_pred EeecccchhhhcchhhhhhHHHHHHhhcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechhhcCh
Confidence 222211000 000000 0 00 00001245677776554321
Q ss_pred HHHHhhhhcCccEEEEccccccCCcchHHHHHHhcCCCCcEEEEeccCCCC
Q 004880 271 DARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIGNKLLLTGTPLQN 321 (725)
Q Consensus 271 ~~~~~l~~~~~~~vIvDEaH~ikn~~s~~~~~l~~l~~~~rllLTgTP~~n 321 (725)
..+.. .|++||||||..+..+. .+. ..+....+++|-|=|.|-
T Consensus 512 ---~~L~~-~fd~viIDEA~q~~e~~-~li---~l~~~~~~lilvGD~~QL 554 (802)
T 2xzl_A 512 ---KRLDT-KFRTVLIDESTQASEPE-CLI---PIVKGAKQVILVGDHQQL 554 (802)
T ss_dssp ---TTCCS-CCSEEEETTGGGSCHHH-HHH---HHTTTBSEEEEEECTTSC
T ss_pred ---HHHhc-cCCEEEEECccccchHH-HHH---HHHhCCCEEEEEeCcccc
Confidence 22444 89999999998875443 122 223345789999998773
No 102
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.95 E-value=0.0012 Score=77.47 Aligned_cols=154 Identities=18% Similarity=0.275 Sum_probs=91.3
Q ss_pred CcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccH-HHHHHHHHHhCCCceE
Q 004880 154 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTL-SNWVNEISRFVPSVSA 232 (725)
Q Consensus 154 ~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll-~~W~~E~~~~~p~~~v 232 (725)
..|-+.|.+++..++. +.-.+|.-..|+|||.++..++..+... ...++||++|.... .+....+.... ..+
T Consensus 355 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~ti~~~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~g--~~v 427 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQTG--LKV 427 (800)
T ss_dssp CCCCHHHHHHHHHHHT----SSEEEEECCTTSCHHHHHHHHHHHHHTT-CSSCEEEEESSHHHHHHHHHHHHTTT--CCE
T ss_pred cCCCHHHHHHHHHhcc----CCeEEEEcCCCCCHHHHHHHHHHHHHHc-CCCcEEEEcCcHHHHHHHHHHHHHhC--cce
Confidence 4688999999988763 4456888999999999999888888753 34689999998744 45545554432 233
Q ss_pred EEEeCChhh-----------HH------------HHHHh--cCC------------------CCCCCCCCEEEecHHHHH
Q 004880 233 IIYHGSKKE-----------RD------------EIRRK--HMP------------------RAIGPKFPIVVTSYEVAL 269 (725)
Q Consensus 233 ~~~~g~~~~-----------r~------------~~~~~--~~~------------------~~~~~~~~vvItsye~~~ 269 (725)
+-+...... .. .+... ... .......+||++|...+.
T Consensus 428 vRlg~~~r~~i~~~~~~~tlh~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~ 507 (800)
T 2wjy_A 428 VRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAG 507 (800)
T ss_dssp EECCCGGGGGCCCTTGGGBHHHHHHTCTTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETGGGG
T ss_pred EeecccchhhhcchhhhhhHHHHHHcCccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCCEEEEchhhhC
Confidence 222211100 00 00000 000 000013456666654332
Q ss_pred HHHHHhhhhcCccEEEEccccccCCcchHHHHHHhcCCCCcEEEEeccCCCC
Q 004880 270 SDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIGNKLLLTGTPLQN 321 (725)
Q Consensus 270 ~~~~~~l~~~~~~~vIvDEaH~ikn~~s~~~~~l~~l~~~~rllLTgTP~~n 321 (725)
. ..+....|++||||||..+..+. .+ +..+....+++|-|=|.|-
T Consensus 508 ~---~~l~~~~fd~viIDEAsQ~~e~~-~l---i~l~~~~~~~ilvGD~~QL 552 (800)
T 2wjy_A 508 D---PRLAKMQFRSILIDESTQATEPE-CM---VPVVLGAKQLILVGDHCQL 552 (800)
T ss_dssp C---TTTTTCCCSEEEETTGGGSCHHH-HH---HHHTTTBSEEEEEECTTSC
T ss_pred C---hhhhcCCCCEEEEECCCCCCcHH-HH---HHHHhcCCeEEEecccccC
Confidence 1 23455679999999997775443 12 2223445789999998774
No 103
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.66 E-value=0.011 Score=68.13 Aligned_cols=66 Identities=17% Similarity=0.099 Sum_probs=48.9
Q ss_pred cccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCC--CCCCcEEEEcCcc-HHHHHHHHHHh
Q 004880 155 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNG--LHGPYLVIAPLST-LSNWVNEISRF 226 (725)
Q Consensus 155 ~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~--~~~~~LIV~P~sl-l~~W~~E~~~~ 226 (725)
.|-+.|.++|.. ..+..++-...|+|||.+.+.-+.++...+ ...++|+|+++.. ..+..+.+.+.
T Consensus 9 ~Ln~~Q~~av~~------~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 9 SLNDKQREAVAA------PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TCCHHHHHHHTC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhC------CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 688999999862 244567777899999999999999988754 2356999999764 44455556554
No 104
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.54 E-value=0.016 Score=61.81 Aligned_cols=154 Identities=17% Similarity=0.162 Sum_probs=87.8
Q ss_pred CcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCcc-HHHHHHHHHHh---CCC
Q 004880 154 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLST-LSNWVNEISRF---VPS 229 (725)
Q Consensus 154 ~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sl-l~~W~~E~~~~---~p~ 229 (725)
..|.|||...+..+.. .+-.++.-.-+.|||..+.+++.+.........+++++|..- ...+.+.+..+ .|.
T Consensus 162 ~~L~p~Qk~il~~l~~----~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ 237 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSS----KRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPD 237 (385)
T ss_dssp CCCCHHHHHHHHHHHH----SSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSCT
T ss_pred CCCCHHHHHHHHhhcc----CcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhChH
Confidence 4899999988776632 344788888999999987777666444444557899999652 22244555544 342
Q ss_pred -ceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEccccccCCcchHHHHHHhc-C-
Q 004880 230 -VSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKY-I- 306 (725)
Q Consensus 230 -~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~l~~~~~~~vIvDEaH~ikn~~s~~~~~l~~-l- 306 (725)
+...+...+... ..+ .....+.+.+- + ...++....+++|+||+|.+++. ..++.++.. +
T Consensus 238 ll~~~~~~~~~~~------I~f----~nGs~i~~lsa-----~-~~slrG~~~~~viiDE~a~~~~~-~el~~al~~~ls 300 (385)
T 2o0j_A 238 FLQPGIVEWNKGS------IEL----DNGSSIGAYAS-----S-PDAVRGNSFAMIYIEDCAFIPNF-HDSWLAIQPVIS 300 (385)
T ss_dssp TTSCCEEEECSSE------EEE----TTSCEEEEEEC-----S-HHHHHTSCCSEEEEESGGGSTTH-HHHHHHHHHHHH
T ss_pred hhhhhhccCCccE------EEe----CCCCEEEEEEC-----C-CCCccCCCCCEEEechhhhcCCC-HHHHHHHHHHhh
Confidence 111000000000 000 01122222222 1 13456778899999999999873 233333332 2
Q ss_pred -CCCcEEEEeccCCCCChHHhhhhh
Q 004880 307 -PIGNKLLLTGTPLQNNLAELWSLL 330 (725)
Q Consensus 307 -~~~~rllLTgTP~~n~~~el~sll 330 (725)
....++++++||-..+ -+|.+.
T Consensus 301 ~~~~~kiiiiSTP~g~n--~fy~l~ 323 (385)
T 2o0j_A 301 SGRRSKIIITTTPNGLN--HFYDIW 323 (385)
T ss_dssp STTCCEEEEEECCCSSS--HHHHHH
T ss_pred cCCCCcEEEEeCCCCch--hHHHHH
Confidence 2457899999996553 444443
No 105
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.20 E-value=0.014 Score=55.66 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=28.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcC
Q 004880 177 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL 213 (725)
Q Consensus 177 ~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~ 213 (725)
.++.-+||+|||..++.++..+...+ .+++++.|.
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~g--~~v~~~~~~ 40 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLGK--KKVAVFKPK 40 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--CEEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeec
Confidence 46788899999999988887776654 478888886
No 106
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.13 E-value=0.04 Score=62.66 Aligned_cols=147 Identities=16% Similarity=0.151 Sum_probs=85.1
Q ss_pred CcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCc-cHHHHHHHHHHhC---CC
Q 004880 154 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFV---PS 229 (725)
Q Consensus 154 ~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~---p~ 229 (725)
..|.|||...+..+. ..+..++.-.-|.|||..+.+++.+.....+...+++++|.. ....+...+..++ |.
T Consensus 162 ~~l~p~Q~~i~~~l~----~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~ 237 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPD 237 (592)
T ss_dssp CCCCHHHHHHHHHHH----HCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTSCT
T ss_pred CcCCHHHHHHHHhhc----cccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhChH
Confidence 478999998777652 245578888899999998776666555554555799999955 2333445665553 32
Q ss_pred -ceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEccccccCCcchHHHHHHhc-CC
Q 004880 230 -VSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKY-IP 307 (725)
Q Consensus 230 -~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~l~~~~~~~vIvDEaH~ikn~~s~~~~~l~~-l~ 307 (725)
+.......+.. .+. ......+...+-+ ...++..+.+++|+||+|.+++.. .++.++.. +.
T Consensus 238 ~~~~~~~~~~~~--------~i~--~~nGs~i~~~s~~------~~~lrG~~~~~~iiDE~~~~~~~~-~l~~~~~~~l~ 300 (592)
T 3cpe_A 238 FLQPGIVEWNKG--------SIE--LDNGSSIGAYASS------PDAVRGNSFAMIYIEDCAFIPNFH-DSWLAIQPVIS 300 (592)
T ss_dssp TTSCCEEEECSS--------EEE--ETTSCEEEEEECC------HHHHHHSCCSEEEEETGGGCTTHH-HHHHHHHHHHS
T ss_pred hhccccccCCcc--------EEE--ecCCCEEEEEeCC------CCCccCCCcceEEEehhccCCchh-HHHHHHHHHhc
Confidence 11000000000 000 0011222222211 133556678999999999998742 44444432 22
Q ss_pred --CCcEEEEeccCCCC
Q 004880 308 --IGNKLLLTGTPLQN 321 (725)
Q Consensus 308 --~~~rllLTgTP~~n 321 (725)
...++++++||-..
T Consensus 301 ~~~~~~ii~isTP~~~ 316 (592)
T 3cpe_A 301 SGRRSKIIITTTPNGL 316 (592)
T ss_dssp SSSCCEEEEEECCCTT
T ss_pred cCCCceEEEEeCCCCc
Confidence 35789999999554
No 107
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.98 E-value=0.016 Score=59.89 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=27.7
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHhCCC--CCCcEEEEc
Q 004880 175 LNGILADQMGLGKTIQTIAFLAHLKGNGL--HGPYLVIAP 212 (725)
Q Consensus 175 ~~~ILademGlGKT~qaiali~~l~~~~~--~~~~LIV~P 212 (725)
.+.+|.-+.|+|||..+-+++..+...+. .++++.+.+
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 35799999999999999988888766433 335555444
No 108
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.88 E-value=0.041 Score=53.36 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=28.5
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCc
Q 004880 178 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS 214 (725)
Q Consensus 178 ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~s 214 (725)
++.-+||+|||..++..+..+...+ .+++|+.|.-
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~~g--~kVli~k~~~ 66 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQFAK--QHAIVFKPCI 66 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHTT--CCEEEEECC-
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCC--CEEEEEEecc
Confidence 4788999999999999888777664 5899999853
No 109
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.68 E-value=0.024 Score=54.24 Aligned_cols=35 Identities=20% Similarity=0.157 Sum_probs=28.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcC
Q 004880 177 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL 213 (725)
Q Consensus 177 ~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~ 213 (725)
.++.-+||+|||..++.++..+...+ .+++|+.|.
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~~g--~kV~v~k~~ 45 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKIAK--QKIQVFKPE 45 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC--CEEEEEEec
Confidence 36778899999999998888877654 589999985
No 110
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.67 E-value=0.062 Score=56.28 Aligned_cols=46 Identities=15% Similarity=0.163 Sum_probs=38.3
Q ss_pred ccchHHHHHHHHHHHhcCCCC---eEEEcCCCCcHHHHHHHHHHHHHhC
Q 004880 156 LKSYQLKGVKWLISLWQNGLN---GILADQMGLGKTIQTIAFLAHLKGN 201 (725)
Q Consensus 156 Lr~yQ~~gv~~l~~~~~~~~~---~ILademGlGKT~qaiali~~l~~~ 201 (725)
++|+|.+.+..+...+.++.- .++.-+.|+|||..+.+++..+...
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 579999999888887766542 5888999999999999999888754
No 111
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.34 E-value=0.025 Score=61.12 Aligned_cols=108 Identities=15% Similarity=0.040 Sum_probs=66.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCc-cHHHHHHHHHHhCCCceEEEEeCChhhHHHHHHhcCCCCCC
Q 004880 177 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMPRAIG 255 (725)
Q Consensus 177 ~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~ 255 (725)
.++.-..|+|||.....++. ..+.||++|.. +...|.+.+.+... .
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~-------~~~~lVlTpT~~aa~~l~~kl~~~~~----------~---------------- 210 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVN-------FEEDLILVPGRQAAEMIRRRANASGI----------I---------------- 210 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCC-------TTTCEEEESCHHHHHHHHHHHTTTSC----------C----------------
T ss_pred EEEEcCCCCCHHHHHHHHhc-------cCCeEEEeCCHHHHHHHHHHhhhcCc----------c----------------
Confidence 36788899999977655542 15789999976 55678777643210 0
Q ss_pred CCCCEEEecHHHHHHHHHHhhhhcCccEEEEccccccCCcchHHHHHHhcCCCCcEEEEeccCCCC
Q 004880 256 PKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIGNKLLLTGTPLQN 321 (725)
Q Consensus 256 ~~~~vvItsye~~~~~~~~~l~~~~~~~vIvDEaH~ikn~~s~~~~~l~~l~~~~rllLTgTP~~n 321 (725)
.....-+.|++.+.... ........++|||||+..+- ...+...+...+. .+++|.|=|-|-
T Consensus 211 ~~~~~~V~T~dsfL~~~-~~~~~~~~d~liiDE~sm~~--~~~l~~l~~~~~~-~~vilvGD~~Ql 272 (446)
T 3vkw_A 211 VATKDNVRTVDSFLMNY-GKGARCQFKRLFIDEGLMLH--TGCVNFLVEMSLC-DIAYVYGDTQQI 272 (446)
T ss_dssp CCCTTTEEEHHHHHHTT-TSSCCCCCSEEEEETGGGSC--HHHHHHHHHHTTC-SEEEEEECTTSC
T ss_pred ccccceEEEeHHhhcCC-CCCCCCcCCEEEEeCcccCC--HHHHHHHHHhCCC-CEEEEecCcccc
Confidence 01122367777654331 11112247999999999772 2333333344444 899999998764
No 112
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.31 E-value=0.11 Score=49.84 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=21.6
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHhC
Q 004880 176 NGILADQMGLGKTIQTIAFLAHLKGN 201 (725)
Q Consensus 176 ~~ILademGlGKT~qaiali~~l~~~ 201 (725)
+.+|.-+.|+|||..+-.++..+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~ 65 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGE 65 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 47899999999999888888776544
No 113
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.29 E-value=0.063 Score=62.01 Aligned_cols=77 Identities=16% Similarity=0.172 Sum_probs=53.7
Q ss_pred cccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhC-C-CCCCcEEEEcCcc-HHHHHHHHHHhCC---
Q 004880 155 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGN-G-LHGPYLVIAPLST-LSNWVNEISRFVP--- 228 (725)
Q Consensus 155 ~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~-~-~~~~~LIV~P~sl-l~~W~~E~~~~~p--- 228 (725)
.|-|.|.++|... .+..++....|+|||.+.+.-+.++... + ....+|+|+.+.- .....+.+.+..+
T Consensus 2 ~L~~~Q~~av~~~------~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~ 75 (673)
T 1uaa_A 2 RLNPGQQQAVEFV------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKE 75 (673)
T ss_dssp CCCHHHHHHHHCC------SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTT
T ss_pred CCCHHHHHHHhCC------CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCccc
Confidence 4778999988642 4566788899999999999888888764 3 3457899998664 4455556666543
Q ss_pred --CceEEEEeC
Q 004880 229 --SVSAIIYHG 237 (725)
Q Consensus 229 --~~~v~~~~g 237 (725)
.+.+..+|+
T Consensus 76 ~~~~~v~Tfhs 86 (673)
T 1uaa_A 76 ARGLMISTFHT 86 (673)
T ss_dssp TTTSEEEEHHH
T ss_pred ccCCEEEeHHH
Confidence 244554444
No 114
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.85 E-value=0.16 Score=49.69 Aligned_cols=35 Identities=17% Similarity=0.122 Sum_probs=28.0
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCc
Q 004880 178 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS 214 (725)
Q Consensus 178 ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~s 214 (725)
++.-.||+|||..++..+......+ .+++|+-|.-
T Consensus 23 v~~G~MgsGKTT~lL~~~~r~~~~g--~kvli~kp~~ 57 (234)
T 2orv_A 23 VILGPMFSGKSTELMRRVRRFQIAQ--YKCLVIKYAK 57 (234)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHTTT--CCEEEEEETT
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCC--CeEEEEeecC
Confidence 6778999999999888877766553 6889998853
No 115
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.68 E-value=0.17 Score=52.43 Aligned_cols=37 Identities=16% Similarity=-0.064 Sum_probs=27.8
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcC
Q 004880 175 LNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL 213 (725)
Q Consensus 175 ~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~ 213 (725)
.+.+|.-+.|+|||..+-+++..+... ..+++.+...
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~ 74 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSAD 74 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHH
Confidence 467899999999999988888877665 3455555443
No 116
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=94.41 E-value=0.094 Score=59.83 Aligned_cols=78 Identities=13% Similarity=0.132 Sum_probs=50.4
Q ss_pred hCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecc--cccCCCCCC--CCC
Q 004880 494 ARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTR--AGGLGINLT--AAD 569 (725)
Q Consensus 494 ~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~--agg~GiNL~--~a~ 569 (725)
..++.++||..+-..++.+...+. .+... ..-+++..+|..++++|. +.+. +|+++- ...+|||++ .+.
T Consensus 446 ~~~g~~lvlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~-~~~~---vL~~v~~gsf~EGiD~~g~~l~ 518 (620)
T 4a15_A 446 KVKKNTIVYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR-RDHG---TIFAVSGGRLSEGINFPGNELE 518 (620)
T ss_dssp HHCSCEEEEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT-TSCC---EEEEETTSCC--------CCCC
T ss_pred hCCCCEEEEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc-cCCc---EEEEEecCceeccccCCCCceE
Confidence 346678888888888888888776 23332 334445568999999998 3333 577764 889999997 688
Q ss_pred EEEEeCCCC
Q 004880 570 TCILYDSDW 578 (725)
Q Consensus 570 ~VI~~D~~w 578 (725)
.||+.-.|+
T Consensus 519 ~viI~~lPf 527 (620)
T 4a15_A 519 MIILAGLPF 527 (620)
T ss_dssp EEEESSCCC
T ss_pred EEEEEcCCC
Confidence 999987775
No 117
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.13 E-value=0.12 Score=46.65 Aligned_cols=39 Identities=15% Similarity=0.093 Sum_probs=26.7
Q ss_pred CccEEEEccccccCC-cchHHHHHHhcCCCCcEEEEeccC
Q 004880 280 NWKYLVVDEGHRLKN-PKCKLLKELKYIPIGNKLLLTGTP 318 (725)
Q Consensus 280 ~~~~vIvDEaH~ikn-~~s~~~~~l~~l~~~~rllLTgTP 318 (725)
.-..+++||.|.+.. ....+...+.......+++.|.+.
T Consensus 76 ~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 76 QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 336899999999963 234566666666666777777664
No 118
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.13 E-value=0.24 Score=46.08 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=22.3
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHh
Q 004880 174 GLNGILADQMGLGKTIQTIAFLAHLKG 200 (725)
Q Consensus 174 ~~~~ILademGlGKT~qaiali~~l~~ 200 (725)
..+.+|.-+.|+|||..+-+++..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 445688899999999999888887765
No 119
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.81 E-value=0.72 Score=42.79 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=22.5
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHh
Q 004880 174 GLNGILADQMGLGKTIQTIAFLAHLKG 200 (725)
Q Consensus 174 ~~~~ILademGlGKT~qaiali~~l~~ 200 (725)
+.+.+|.-+.|+|||..+-+++..+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 356799999999999998888887765
No 120
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.79 E-value=0.13 Score=54.65 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=28.9
Q ss_pred cchHHHHHHHHHHHh-cC--CCCeEEEcCCCCcHHHHHHHHHHHHHh
Q 004880 157 KSYQLKGVKWLISLW-QN--GLNGILADQMGLGKTIQTIAFLAHLKG 200 (725)
Q Consensus 157 r~yQ~~gv~~l~~~~-~~--~~~~ILademGlGKT~qaiali~~l~~ 200 (725)
++.+++.+...+..+ .. +.+.+|.-+.|+|||..+-+++..+..
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455555554333332 22 334688999999999998888877654
No 121
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.78 E-value=0.3 Score=53.12 Aligned_cols=39 Identities=18% Similarity=0.026 Sum_probs=28.7
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcC
Q 004880 175 LNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL 213 (725)
Q Consensus 175 ~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~ 213 (725)
.+.+|.-+.|+|||..+-++...+....+..+++.+...
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 467899999999999988888777665444555555443
No 122
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.63 E-value=0.2 Score=47.79 Aligned_cols=35 Identities=17% Similarity=0.112 Sum_probs=27.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcC
Q 004880 177 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL 213 (725)
Q Consensus 177 ~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~ 213 (725)
-++.-.||+|||...+-.+..+...+ .+++++.|.
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~~--~kvl~~kp~ 57 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIAQ--YKCLVIKYA 57 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTT--CCEEEEEET
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEEccc
Confidence 37788999999987777777666654 688999885
No 123
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.36 E-value=0.36 Score=49.66 Aligned_cols=42 Identities=14% Similarity=0.267 Sum_probs=27.7
Q ss_pred cCccEEEEccccccCCc-chHHHHHHhcCCCCcEEEEeccCCC
Q 004880 279 YNWKYLVVDEGHRLKNP-KCKLLKELKYIPIGNKLLLTGTPLQ 320 (725)
Q Consensus 279 ~~~~~vIvDEaH~ikn~-~s~~~~~l~~l~~~~rllLTgTP~~ 320 (725)
.+..+||+||+|++... ...+.+.+.......++++|++...
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSS 151 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCcc
Confidence 35689999999998532 2335555555566667777766543
No 124
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.19 E-value=0.65 Score=44.93 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=20.5
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHh
Q 004880 176 NGILADQMGLGKTIQTIAFLAHLKG 200 (725)
Q Consensus 176 ~~ILademGlGKT~qaiali~~l~~ 200 (725)
..+|.-+.|+|||..+-.++..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4689999999999888887776654
No 125
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.92 E-value=0.21 Score=51.78 Aligned_cols=25 Identities=20% Similarity=0.118 Sum_probs=20.4
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 004880 174 GLNGILADQMGLGKTIQTIAFLAHL 198 (725)
Q Consensus 174 ~~~~ILademGlGKT~qaiali~~l 198 (725)
..+.+|.-+.|+|||..+-+++..+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 3457999999999999988877654
No 126
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=92.91 E-value=0.39 Score=49.65 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=28.4
Q ss_pred CccEEEEccccccC-C-cchHHHHHHhcCCCCcEEEEeccCCCC
Q 004880 280 NWKYLVVDEGHRLK-N-PKCKLLKELKYIPIGNKLLLTGTPLQN 321 (725)
Q Consensus 280 ~~~~vIvDEaH~ik-n-~~s~~~~~l~~l~~~~rllLTgTP~~n 321 (725)
...+|||||+|.+. . ....+.+.+.......++++|.++...
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDG 148 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 56899999999995 2 223344445555566788888877543
No 127
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=92.84 E-value=0.52 Score=45.61 Aligned_cols=35 Identities=20% Similarity=0.084 Sum_probs=26.9
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCc
Q 004880 178 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS 214 (725)
Q Consensus 178 ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~s 214 (725)
++.-+||+|||...+-.+..+...+ .+++|+.|.-
T Consensus 32 vitG~M~sGKTT~Llr~~~r~~~~g--~kvli~kp~~ 66 (219)
T 3e2i_A 32 CITGSMFSGKSEELIRRLRRGIYAK--QKVVVFKPAI 66 (219)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTT--CCEEEEEEC-
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC--CceEEEEecc
Confidence 6778899999988887776666554 5789999843
No 128
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.54 E-value=0.27 Score=53.55 Aligned_cols=128 Identities=13% Similarity=0.136 Sum_probs=72.4
Q ss_pred HHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHHHHHHHHHHh---CCCceEEEEeCC
Q 004880 162 KGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRF---VPSVSAIIYHGS 238 (725)
Q Consensus 162 ~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~---~p~~~v~~~~g~ 238 (725)
.++..++.-+..|.-.+|+-..|+|||.-++.++....... ..|++++..-....++...+... .+...+ ..|.
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE~~~~~l~~R~~~~~~~i~~~~l--~~g~ 264 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLEMPAAQLTLRMMCSEARIDMNRV--RLGQ 264 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSSCHHHHHHHHHHHHTTCCTTTC--CGGG
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECCCCHHHHHHHHHHHHcCCCHHHH--hCCC
Confidence 34666664455566679999999999999988888776531 35899998866666665554321 111111 0111
Q ss_pred --hhhHHHHHHhcCCCCCCCCCCEEEe-----cHHHHHHHHHHhhhhcCccEEEEccccccCCc
Q 004880 239 --KKERDEIRRKHMPRAIGPKFPIVVT-----SYEVALSDARKYLRHYNWKYLVVDEGHRLKNP 295 (725)
Q Consensus 239 --~~~r~~~~~~~~~~~~~~~~~vvIt-----sye~~~~~~~~~l~~~~~~~vIvDEaH~ikn~ 295 (725)
..+...+.... .. . ...++.|. |.+.+...++......+.++||||..+.+...
T Consensus 265 l~~~~~~~~~~a~-~~-l-~~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~~ 325 (444)
T 2q6t_A 265 LTDRDFSRLVDVA-SR-L-SEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSGP 325 (444)
T ss_dssp CCHHHHHHHHHHH-HH-H-HTSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBCC
T ss_pred CCHHHHHHHHHHH-HH-H-hcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCCC
Confidence 11111110000 00 0 01234442 45555555555555668999999999998643
No 129
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.52 E-value=0.35 Score=49.78 Aligned_cols=38 Identities=3% Similarity=-0.117 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhcCCC--CeEEEcCCCCcHHHHHHHHHHH
Q 004880 160 QLKGVKWLISLWQNGL--NGILADQMGLGKTIQTIAFLAH 197 (725)
Q Consensus 160 Q~~gv~~l~~~~~~~~--~~ILademGlGKT~qaiali~~ 197 (725)
|.+.+..+.....++. ..++.-+.|.|||..+.+++..
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3445555555545554 4588999999999888887764
No 130
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.34 E-value=0.33 Score=51.73 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=34.5
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHHHHHHHH
Q 004880 173 NGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEI 223 (725)
Q Consensus 173 ~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~~W~~E~ 223 (725)
..+|.+|.-+.|+|||+.|=+++.++. .+++.|.+..++..|.-|-
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~-----~~f~~v~~s~l~sk~vGes 226 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTD-----CKFIRVSGAELVQKYIGEG 226 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHT-----CEEEEEEGGGGSCSSTTHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhC-----CCceEEEhHHhhccccchH
Confidence 456789999999999999888877643 3677777777776664443
No 131
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.24 E-value=0.23 Score=50.28 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=20.6
Q ss_pred cCCCCeEEEcCCCCcHHHHHHHHHHH
Q 004880 172 QNGLNGILADQMGLGKTIQTIAFLAH 197 (725)
Q Consensus 172 ~~~~~~ILademGlGKT~qaiali~~ 197 (725)
..+.+.+|.-+.|+|||..+-+++..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34556799999999999888777654
No 132
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=92.17 E-value=0.24 Score=52.22 Aligned_cols=25 Identities=20% Similarity=0.118 Sum_probs=21.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 004880 174 GLNGILADQMGLGKTIQTIAFLAHL 198 (725)
Q Consensus 174 ~~~~ILademGlGKT~qaiali~~l 198 (725)
..+.+|.-+.|+|||..|-+++..+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 3567899999999999988888765
No 133
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.05 E-value=0.39 Score=50.64 Aligned_cols=28 Identities=29% Similarity=0.311 Sum_probs=22.6
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHh
Q 004880 173 NGLNGILADQMGLGKTIQTIAFLAHLKG 200 (725)
Q Consensus 173 ~~~~~ILademGlGKT~qaiali~~l~~ 200 (725)
.+.+.+|.-+.|+|||..+-.++..+..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4556789999999999998888877654
No 134
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=91.99 E-value=0.37 Score=50.76 Aligned_cols=53 Identities=21% Similarity=0.295 Sum_probs=36.6
Q ss_pred cchHHHHHHHHHHHhcCCC----CeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEc
Q 004880 157 KSYQLKGVKWLISLWQNGL----NGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 212 (725)
Q Consensus 157 r~yQ~~gv~~l~~~~~~~~----~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P 212 (725)
.+.+...+.++......+. +.+|.-+.|+|||..+-+++..+.. ..|++.+..
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~---~~~~~~~~~ 105 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP---DTPFTAIAG 105 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS---SCCEEEEEG
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc---cCCcccccc
Confidence 4566666666666555443 5799999999999999888877642 236555554
No 135
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=91.84 E-value=0.63 Score=48.91 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=20.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHh
Q 004880 177 GILADQMGLGKTIQTIAFLAHLKG 200 (725)
Q Consensus 177 ~ILademGlGKT~qaiali~~l~~ 200 (725)
.+|.-+.|+|||..+-+++..+..
T Consensus 41 ~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 41 YLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 589999999999998888777654
No 136
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.77 E-value=0.31 Score=50.87 Aligned_cols=40 Identities=13% Similarity=0.245 Sum_probs=27.3
Q ss_pred CccEEEEccccccCC-cchHHHHHHhcCCCCcEEEEeccCC
Q 004880 280 NWKYLVVDEGHRLKN-PKCKLLKELKYIPIGNKLLLTGTPL 319 (725)
Q Consensus 280 ~~~~vIvDEaH~ikn-~~s~~~~~l~~l~~~~rllLTgTP~ 319 (725)
++.+||+||+|.+.. ....+.+.+.......++++++++.
T Consensus 133 ~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~ 173 (353)
T 1sxj_D 133 PYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYV 173 (353)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCch
Confidence 568999999999863 2344556666666666777766543
No 137
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.77 E-value=0.3 Score=47.59 Aligned_cols=41 Identities=17% Similarity=-0.143 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhc--CCCCeEEEcCCCCcHHHHHHHHHHHHHhC
Q 004880 161 LKGVKWLISLWQ--NGLNGILADQMGLGKTIQTIAFLAHLKGN 201 (725)
Q Consensus 161 ~~gv~~l~~~~~--~~~~~ILademGlGKT~qaiali~~l~~~ 201 (725)
...+..+..... .+.+.+|.-+.|+|||..+-+++..+...
T Consensus 37 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 37 DELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp HHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 344555544433 35567899999999999988888777655
No 138
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=91.44 E-value=2.2 Score=44.85 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=21.1
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHhC
Q 004880 176 NGILADQMGLGKTIQTIAFLAHLKGN 201 (725)
Q Consensus 176 ~~ILademGlGKT~qaiali~~l~~~ 201 (725)
+.+|.-+.|+|||..+-+++..+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 57899999999999888777766543
No 139
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.32 E-value=0.41 Score=49.17 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=21.2
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHh
Q 004880 176 NGILADQMGLGKTIQTIAFLAHLKG 200 (725)
Q Consensus 176 ~~ILademGlGKT~qaiali~~l~~ 200 (725)
+.+|.-+.|+|||..+-+++..+..
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcC
Confidence 4789999999999998888877654
No 140
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=91.16 E-value=2.3 Score=39.47 Aligned_cols=42 Identities=19% Similarity=0.175 Sum_probs=32.8
Q ss_pred chHHHHHHHHHHHh-----cCCCCeEEEcCCCCcHHHHHHHHHHHHH
Q 004880 158 SYQLKGVKWLISLW-----QNGLNGILADQMGLGKTIQTIAFLAHLK 199 (725)
Q Consensus 158 ~yQ~~gv~~l~~~~-----~~~~~~ILademGlGKT~qaiali~~l~ 199 (725)
+.|.+++..+.... ..+.+.+|.-+.|+|||..+-+++..+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 17 VSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56888887777654 2456678889999999999888888776
No 141
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=91.03 E-value=0.27 Score=51.01 Aligned_cols=38 Identities=16% Similarity=0.149 Sum_probs=26.3
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCcc
Q 004880 174 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLST 215 (725)
Q Consensus 174 ~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sl 215 (725)
..+.+|.-+.|+|||..+-+++..+. ..+++.|....+
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~----~~~~~~i~~~~l 82 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEAN----NSTFFSISSSDL 82 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTT----SCEEEEEECCSS
T ss_pred CceEEEECCCCccHHHHHHHHHHHcC----CCcEEEEEhHHH
Confidence 35678999999999999888777651 234555554433
No 142
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.81 E-value=0.35 Score=52.89 Aligned_cols=127 Identities=10% Similarity=0.082 Sum_probs=70.0
Q ss_pred HHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHHHHHHHHH--HhCCCceEEEEeCC--
Q 004880 163 GVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEIS--RFVPSVSAIIYHGS-- 238 (725)
Q Consensus 163 gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~~W~~E~~--~~~p~~~v~~~~g~-- 238 (725)
++..++.-+..|.-.+|+-..|+|||.-++.++..+.... ..+++++.......++...+. ...-...-+ ..|.
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l-~~g~l~ 269 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEMSAQQLVMRMLCAEGNINAQNL-RTGKLT 269 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSSCHHHHHHHHHHHHHTCCHHHH-HTSCCC
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCCCHHHHHHHHHHHHcCCCHHHH-hcCCCC
Confidence 4666665456666679999999999999988888776521 248999987655555544432 111000000 0111
Q ss_pred hhhHHHHHHhcCCCCCCCCCCEEEe-----cHHHHHHHHHHhhhhcCccEEEEccccccCC
Q 004880 239 KKERDEIRRKHMPRAIGPKFPIVVT-----SYEVALSDARKYLRHYNWKYLVVDEGHRLKN 294 (725)
Q Consensus 239 ~~~r~~~~~~~~~~~~~~~~~vvIt-----sye~~~~~~~~~l~~~~~~~vIvDEaH~ikn 294 (725)
..+...+.... .. . ...++.+. |.+.+...++......+.++||||+.+.+..
T Consensus 270 ~~~~~~~~~a~-~~-l-~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 270 PEDWGKLTMAM-GS-L-SNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHHHHHHHHHH-HH-H-HSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred HHHHHHHHHHH-HH-H-hcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhcc
Confidence 11111100000 00 0 11234432 4555555554555556889999999999873
No 143
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.64 E-value=0.17 Score=45.59 Aligned_cols=23 Identities=13% Similarity=0.024 Sum_probs=18.0
Q ss_pred cCCCCeEEEcCCCCcHHHHHHHH
Q 004880 172 QNGLNGILADQMGLGKTIQTIAF 194 (725)
Q Consensus 172 ~~~~~~ILademGlGKT~qaial 194 (725)
..+.+.+|.-+.|+|||..|-++
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGG
T ss_pred CCCCcEEEECCCCccHHHHHHHH
Confidence 45678899999999999655443
No 144
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=90.40 E-value=1.6 Score=44.34 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=21.2
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 004880 174 GLNGILADQMGLGKTIQTIAFLAHL 198 (725)
Q Consensus 174 ~~~~ILademGlGKT~qaiali~~l 198 (725)
+.+.+|.-++|+|||..+-+++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999888777765
No 145
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=90.22 E-value=1.5 Score=47.57 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=25.6
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHHH
Q 004880 174 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSN 218 (725)
Q Consensus 174 ~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~~ 218 (725)
..+.+|.-+.|+|||..+-+++..+. ..+++.|....++..
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~----~~~~~~v~~~~l~~~ 207 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEAN----NSTFFSISSSDLVSK 207 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCC----SSEEEEECCC-----
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC----CCCEEEEeHHHHHhh
Confidence 35678999999999998888777641 235555555444433
No 146
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=90.18 E-value=0.79 Score=45.76 Aligned_cols=45 Identities=13% Similarity=0.148 Sum_probs=28.0
Q ss_pred HHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcC
Q 004880 167 LISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL 213 (725)
Q Consensus 167 l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~ 213 (725)
+......+.+.+|.-++|+|||..+-++...+... ..|++.|-..
T Consensus 22 ~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~ 66 (265)
T 2bjv_A 22 VSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCA 66 (265)
T ss_dssp HHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGG
T ss_pred HHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecC
Confidence 33333556788999999999998776655443221 2455554433
No 147
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.07 E-value=0.26 Score=51.51 Aligned_cols=128 Identities=10% Similarity=0.036 Sum_probs=70.2
Q ss_pred HHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHHHHHHHHHHhCCCceEE-EEeCC--h
Q 004880 163 GVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAI-IYHGS--K 239 (725)
Q Consensus 163 gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~v~-~~~g~--~ 239 (725)
.+..++.-+..|.-.+|+...|.|||.-++.++..+... ..++++++.-....+....+......+..- +..|. .
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~g~Ls~ 112 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSLEMSAEQLALRALSDLTSINMHDLESGRLDD 112 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHHHTCCCH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHhcCCCCH
Confidence 455565445556667999999999999998888777663 368999998666555544442211010000 00111 1
Q ss_pred hhHHHHHHhcCCCCCCCCCCEEEe-----cHHHHHHHHHHhhhhc-CccEEEEccccccCCc
Q 004880 240 KERDEIRRKHMPRAIGPKFPIVVT-----SYEVALSDARKYLRHY-NWKYLVVDEGHRLKNP 295 (725)
Q Consensus 240 ~~r~~~~~~~~~~~~~~~~~vvIt-----sye~~~~~~~~~l~~~-~~~~vIvDEaH~ikn~ 295 (725)
.+...+..... .....++.|. |...+...++...... +.++||||-.+.+...
T Consensus 113 ~e~~~l~~a~~---~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~ 171 (338)
T 4a1f_A 113 DQWENLAKCFD---HLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGS 171 (338)
T ss_dssp HHHHHHHHHHH---HHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTH
T ss_pred HHHHHHHHHHH---HHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCC
Confidence 11111100000 0001233331 3455555554444555 7899999999998753
No 148
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=89.70 E-value=2.2 Score=45.35 Aligned_cols=39 Identities=26% Similarity=0.226 Sum_probs=26.0
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHH
Q 004880 174 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLS 217 (725)
Q Consensus 174 ~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~ 217 (725)
..+.+|.-+.|+|||..+-+++..+ ..+++.|.+..+..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~-----~~~~~~v~~~~l~~ 186 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES-----NATFFNISAASLTS 186 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT-----TCEEEEECSCCC--
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh-----cCcEEEeeHHHhhc
Confidence 4567999999999998887775542 23555555544443
No 149
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=89.63 E-value=1.5 Score=43.45 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=25.2
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCc
Q 004880 174 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS 214 (725)
Q Consensus 174 ~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~s 214 (725)
..+.+|.-+.|+|||..+-+++..+ ..+++.+....
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~-----~~~~~~~~~~~ 74 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA-----QVPFLAMAGAE 74 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH-----TCCEEEEETTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh-----CCCEEEechHH
Confidence 4456899999999999888777654 23555554443
No 150
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=89.58 E-value=1.3 Score=45.28 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=28.3
Q ss_pred cCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCcc
Q 004880 172 QNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLST 215 (725)
Q Consensus 172 ~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sl 215 (725)
....+.+|.-++|+|||..|-++..... ...+|++.|-...+
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~--~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSA--RSDRPLVTLNCAAL 64 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSS--CSSSCCCEEECSSC
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCc--ccCCCeEEEeCCCC
Confidence 4566789999999999988766655332 22357766654443
No 151
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=89.55 E-value=0.23 Score=50.93 Aligned_cols=38 Identities=24% Similarity=0.258 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCCC--CeEEEcCCCCcHHHHHHHHHHHHHh
Q 004880 163 GVKWLISLWQNGL--NGILADQMGLGKTIQTIAFLAHLKG 200 (725)
Q Consensus 163 gv~~l~~~~~~~~--~~ILademGlGKT~qaiali~~l~~ 200 (725)
.+..+......+. +.+|.-+.|+|||..+-+++..+..
T Consensus 25 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~ 64 (319)
T 2chq_A 25 VIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG 64 (319)
T ss_dssp HHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcC
Confidence 3444443333332 4799999999999999888887754
No 152
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.97 E-value=1.2 Score=46.46 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCCCC--eEEEcCCCCcHHHHHHHHHHHHHh
Q 004880 160 QLKGVKWLISLWQNGLN--GILADQMGLGKTIQTIAFLAHLKG 200 (725)
Q Consensus 160 Q~~gv~~l~~~~~~~~~--~ILademGlGKT~qaiali~~l~~ 200 (725)
|...+..+.....+|.- .++.-+.|+|||..+-+++..+..
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34445544444444533 788999999999999888887754
No 153
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=88.55 E-value=0.57 Score=47.82 Aligned_cols=36 Identities=14% Similarity=0.026 Sum_probs=26.2
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCcc
Q 004880 175 LNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLST 215 (725)
Q Consensus 175 ~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sl 215 (725)
.+.+|.-++|+|||..+-+++..+ ..+++.+....+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l-----~~~~i~v~~~~l 72 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM-----GINPIMMSAGEL 72 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH-----TCCCEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEeHHHh
Confidence 456788999999999998888776 235666655433
No 154
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=88.27 E-value=1.5 Score=46.19 Aligned_cols=102 Identities=18% Similarity=0.117 Sum_probs=63.3
Q ss_pred HHHHHHH--HhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHHHHHHHHHHhCCCc-eEEEEeCCh
Q 004880 163 GVKWLIS--LWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSV-SAIIYHGSK 239 (725)
Q Consensus 163 gv~~l~~--~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~-~v~~~~g~~ 239 (725)
++..++. -+..+.-.+|+-+.|+|||..++.++......+ +++++|.......+|. ..++.-+. ++.++.
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g--~~vlyi~~E~s~~~~~--a~~~g~d~~~l~i~~--- 133 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAG--GTCAFIDAEHALDPVY--ARALGVNTDELLVSQ--- 133 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHHH--HHHTTCCGGGCEEEC---
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCC--CeEEEEECCCChhHHH--HHHcCCCHHHceeec---
Confidence 4556653 234455568899999999999999888776553 5889998877666663 22221111 111100
Q ss_pred hhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEccccccC
Q 004880 240 KERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLK 293 (725)
Q Consensus 240 ~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~l~~~~~~~vIvDEaH~ik 293 (725)
..+.+.+...+...+.....++||||....+.
T Consensus 134 ----------------------~~~~e~~l~~l~~l~~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 134 ----------------------PDNGEQALEIMELLVRSGAIDVVVVDSVAALT 165 (366)
T ss_dssp ----------------------CSSHHHHHHHHHHHHTTTCCSEEEEECTTTCC
T ss_pred ----------------------CCcHHHHHHHHHHHHhcCCCCEEEEeChHHhc
Confidence 01344444444445556678999999988774
No 155
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.10 E-value=0.91 Score=49.16 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=31.8
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHHHHH
Q 004880 173 NGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWV 220 (725)
Q Consensus 173 ~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~~W~ 220 (725)
..+|.+|.-+.|+|||+.|=+++..+. .+++.|....++..|.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~-----~~fi~vs~s~L~sk~v 284 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTD-----ATFIRVIGSELVQKYV 284 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHT-----CEEEEEEGGGGCCCSS
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccC-----CCeEEEEhHHhhcccC
Confidence 456778999999999999888877653 3677777766665553
No 156
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=87.82 E-value=5.5 Score=40.96 Aligned_cols=45 Identities=4% Similarity=-0.131 Sum_probs=30.9
Q ss_pred cchHHHHHH-HHHHHhc--CCCCeEEEcCCCCcHHHHHHHHHHHHHhC
Q 004880 157 KSYQLKGVK-WLISLWQ--NGLNGILADQMGLGKTIQTIAFLAHLKGN 201 (725)
Q Consensus 157 r~yQ~~gv~-~l~~~~~--~~~~~ILademGlGKT~qaiali~~l~~~ 201 (725)
|+-|..-+. ++..... .+.+.+|.-.+|+|||.++-.++..+...
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 445555554 3333332 34456889999999999999999888753
No 157
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=87.72 E-value=0.91 Score=47.74 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=25.1
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcC
Q 004880 173 NGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL 213 (725)
Q Consensus 173 ~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~ 213 (725)
...+.+|.-+.|+|||..+-+++..+ ..+++.|...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~-----~~~~~~i~~~ 151 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS-----GATFFSISAS 151 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT-----TCEEEEEEGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc-----CCeEEEEehH
Confidence 34567899999999999888776553 2355555443
No 158
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=87.23 E-value=1 Score=47.23 Aligned_cols=28 Identities=25% Similarity=0.183 Sum_probs=22.4
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhC
Q 004880 174 GLNGILADQMGLGKTIQTIAFLAHLKGN 201 (725)
Q Consensus 174 ~~~~ILademGlGKT~qaiali~~l~~~ 201 (725)
+...+|.-+.|+|||..+-.++..+...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4567899999999999888877776553
No 159
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=86.98 E-value=3.5 Score=39.53 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=57.9
Q ss_pred cCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHHHHHHHHHHhCCCc------eEEEEeCChhhHHHH
Q 004880 172 QNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSV------SAIIYHGSKKERDEI 245 (725)
Q Consensus 172 ~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~------~v~~~~g~~~~r~~~ 245 (725)
..|.-.+|.-+.|+|||..+..++..+... .++++++.......+....+..+.... ....+........
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 96 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKE-- 96 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC------
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccC--
Confidence 445556888999999998888877666543 357888776554444444443322110 1111111110000
Q ss_pred HHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCcc--EEEEccccccC
Q 004880 246 RRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWK--YLVVDEGHRLK 293 (725)
Q Consensus 246 ~~~~~~~~~~~~~~vvItsye~~~~~~~~~l~~~~~~--~vIvDEaH~ik 293 (725)
. ..... . .+.+.+.......+...+.+ +||+||.+.+.
T Consensus 97 --~---~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~ 136 (235)
T 2w0m_A 97 --D---QWSLV--N---LTPEELVNKVIEAKQKLGYGKARLVIDSVSALF 136 (235)
T ss_dssp --C---TTBCS--S---CCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGS
T ss_pred --c---eeeec--C---CCHHHHHHHHHHHHHhhCCCceEEEEECchHhh
Confidence 0 00000 0 14455544444555556788 99999999765
No 160
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.89 E-value=1.2 Score=47.88 Aligned_cols=45 Identities=20% Similarity=0.253 Sum_probs=32.9
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHHHHHHH
Q 004880 173 NGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNE 222 (725)
Q Consensus 173 ~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~~W~~E 222 (725)
...|.+|.-+.|+|||+.|-+++.++. .+++.|....++..|.-+
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~-----~~fi~v~~s~l~sk~vGe 259 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTS-----ATFLRIVGSELIQKYLGD 259 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHT-----CEEEEEESGGGCCSSSSH
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhC-----CCEEEEEHHHhhhccCch
Confidence 346779999999999999888887653 367777776666555433
No 161
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=86.74 E-value=2 Score=46.68 Aligned_cols=128 Identities=13% Similarity=0.062 Sum_probs=71.7
Q ss_pred HHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHHHHHHHHHHhCCCceEEE-EeCC--
Q 004880 162 KGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAII-YHGS-- 238 (725)
Q Consensus 162 ~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~v~~-~~g~-- 238 (725)
.++..++.-+..|.-.+|+-.+|.|||.-++.++...... ..++++++.-....++...+.....++.... ..|.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms~~ql~~R~~~~~~~i~~~~l~~g~~~ 262 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAARRD 262 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSCTTHHHHHHHHHHSCCCHHHHHHTGGG
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcccCC
Confidence 4466666545666667999999999999999988887765 3589999875555554444332211111000 0010
Q ss_pred --hhhHHHHHHhcCCCCCCCCCCEEE-----ecHHHHHHHHHHhhhhcCcc--EEEEccccccCC
Q 004880 239 --KKERDEIRRKHMPRAIGPKFPIVV-----TSYEVALSDARKYLRHYNWK--YLVVDEGHRLKN 294 (725)
Q Consensus 239 --~~~r~~~~~~~~~~~~~~~~~vvI-----tsye~~~~~~~~~l~~~~~~--~vIvDEaH~ikn 294 (725)
..+...+.... ... ...++.| .|.+.+...++......+.+ +||||=.+.+..
T Consensus 263 l~~~~~~~l~~a~--~~l-~~~~l~i~d~~~~s~~~i~~~ir~l~~~~~~~~~lIVID~Lq~~~~ 324 (444)
T 3bgw_A 263 FASEDWGKLSMAI--GEI-SNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEP 324 (444)
T ss_dssp TCCSCHHHHHHHH--HHH-HTSCEEEECCSSCBHHHHHHHHHHHHHHSCSSCEEEEEECSTTSBC
T ss_pred CCHHHHHHHHHHH--HHH-hcCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEecHHhccC
Confidence 00000000000 000 0224444 25566666555555566889 999999998863
No 162
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=86.53 E-value=1.9 Score=41.03 Aligned_cols=141 Identities=16% Similarity=0.144 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCc-cHHHHHHHHHHhCCCceEEEEeC----ChhhHHHHHHh
Q 004880 174 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVPSVSAIIYHG----SKKERDEIRRK 248 (725)
Q Consensus 174 ~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~~~v~~~~g----~~~~r~~~~~~ 248 (725)
....++.-..|-|||-.|++++......| .+++|+-=.. ....=...+-+-++ +.+..+.- ....+..-.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G--~rV~~vQF~Kg~~~~gE~~~l~~L~-v~~~~~g~gf~~~~~~~~~~~-- 102 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHG--KNVGVVQFIKGTWPNGERNLLEPHG-VEFQVMATGFTWETQNREADT-- 102 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTT--CCEEEEESSCCSSCCHHHHHHGGGT-CEEEECCTTCCCCGGGHHHHH--
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEEeeCCCCCccHHHHHHhCC-cEEEEcccccccCCCCcHHHH--
Confidence 45678889999999999999988877765 5778774311 11110111111122 22221110 000000000
Q ss_pred cCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcccccc---C-CcchHHHHHHhcCCCCcEEEEeccCCCCChH
Q 004880 249 HMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRL---K-NPKCKLLKELKYIPIGNKLLLTGTPLQNNLA 324 (725)
Q Consensus 249 ~~~~~~~~~~~vvItsye~~~~~~~~~l~~~~~~~vIvDEaH~i---k-n~~s~~~~~l~~l~~~~rllLTgTP~~n~~~ 324 (725)
..........+..+..-.+++||+||.-.. . -....+...+..-+...-++|||--.+..+.
T Consensus 103 --------------~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~ 168 (196)
T 1g5t_A 103 --------------AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDIL 168 (196)
T ss_dssp --------------HHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHH
T ss_pred --------------HHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHH
Confidence 000111222235566667999999998442 1 1334577777777777789999975544444
Q ss_pred Hhhhhhccc
Q 004880 325 ELWSLLHFI 333 (725)
Q Consensus 325 el~sll~~l 333 (725)
|+..++.=+
T Consensus 169 e~AD~VTem 177 (196)
T 1g5t_A 169 DLADTVSEL 177 (196)
T ss_dssp HHCSEEEEC
T ss_pred HhCcceeee
Confidence 444444333
No 163
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=86.43 E-value=4.2 Score=39.45 Aligned_cols=52 Identities=19% Similarity=0.104 Sum_probs=37.9
Q ss_pred cCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHHHHHHHHHH
Q 004880 172 QNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISR 225 (725)
Q Consensus 172 ~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~~W~~E~~~ 225 (725)
..|.-.+|+-+.|+|||..++.++..+... .++++++.-.....+....+..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~~~~~~~~~~~~ 72 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEEHPVQVRQNMAQ 72 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSSCHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccCCHHHHHHHHHH
Confidence 345556888999999999998888777654 3688888876665665555543
No 164
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=86.35 E-value=4.1 Score=43.97 Aligned_cols=49 Identities=12% Similarity=0.116 Sum_probs=31.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHHHHHHHHHHhC
Q 004880 177 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFV 227 (725)
Q Consensus 177 ~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~ 227 (725)
.+++-..|+|||.++..++.++...| .++++|+-..--..-..++..|.
T Consensus 103 IlivG~~G~GKTTt~~kLA~~l~~~G--~kVllv~~D~~R~aa~eqL~~~~ 151 (443)
T 3dm5_A 103 LLMVGIQGSGKTTTVAKLARYFQKRG--YKVGVVCSDTWRPGAYHQLRQLL 151 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEEECCCSSTHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCcchhHHHHHHHHH
Confidence 46677899999999999998887754 46666663222222234444443
No 165
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=86.34 E-value=0.56 Score=48.49 Aligned_cols=61 Identities=8% Similarity=0.030 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHHHHHHHHH
Q 004880 162 KGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEIS 224 (725)
Q Consensus 162 ~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~~W~~E~~ 224 (725)
.++..++.-+..|.-.+|+-..|+|||.-++.++......+ .++++++.-....+....+.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE~s~~~l~~R~~ 116 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEMGKKENIKRLI 116 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESSSCHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECCCCHHHHHHHHH
Confidence 34555554455666679999999999999888887776654 68999997666555555544
No 166
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=86.31 E-value=0.55 Score=46.14 Aligned_cols=53 Identities=19% Similarity=0.234 Sum_probs=37.4
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHHHHHHHHHHhC
Q 004880 174 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFV 227 (725)
Q Consensus 174 ~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~ 227 (725)
|.-.+|+-+.|+|||.-++-++.+.... ...++++++-.....+....+..+.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~-~~~~v~~~s~E~~~~~~~~~~~~~~ 82 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEERARDLRREMASFG 82 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSSCHHHHHHHHHTTT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCceeecccCCHHHHHHHHHHcC
Confidence 4456999999999999988877654332 1257888887666666666665543
No 167
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=85.90 E-value=1.3 Score=44.91 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=20.2
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 004880 174 GLNGILADQMGLGKTIQTIAFLAHL 198 (725)
Q Consensus 174 ~~~~ILademGlGKT~qaiali~~l 198 (725)
+.+.+|.-+.|+|||..+-+++..+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 5567899999999998887776643
No 168
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=85.74 E-value=3.4 Score=44.47 Aligned_cols=33 Identities=24% Similarity=0.167 Sum_probs=25.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEE
Q 004880 177 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 211 (725)
Q Consensus 177 ~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~ 211 (725)
.+++-..|+|||.++..++.++...+ +++++++
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~~G--~kVllv~ 132 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKKRG--YKVGLVA 132 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEe
Confidence 36667899999999998888887754 4666655
No 169
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.51 E-value=5 Score=41.52 Aligned_cols=50 Identities=14% Similarity=0.297 Sum_probs=31.8
Q ss_pred CccEEEEccccccCCc-chHHHHHHhcCCCCcEEEEeccCCCCChHHhhhh
Q 004880 280 NWKYLVVDEGHRLKNP-KCKLLKELKYIPIGNKLLLTGTPLQNNLAELWSL 329 (725)
Q Consensus 280 ~~~~vIvDEaH~ikn~-~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sl 329 (725)
++.++|+||+|.+-.. ...+.+.+.......+++++++-...-+..+.+-
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR 184 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQ 184 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTT
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhh
Confidence 5789999999996422 2345566666666667777776554444444443
No 170
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.45 E-value=0.77 Score=49.61 Aligned_cols=43 Identities=16% Similarity=0.245 Sum_probs=31.9
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHHHHH
Q 004880 173 NGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWV 220 (725)
Q Consensus 173 ~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~~W~ 220 (725)
..+|.+|.-+.|+|||+.|=+++.++. .+++.|.+..++..|.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~-----~~~~~v~~s~l~sk~~ 256 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIG-----ANFIFSPASGIVDKYI 256 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT-----CEEEEEEGGGTCCSSS
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEehhhhccccc
Confidence 346779999999999999988887653 3677777666665553
No 171
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=85.29 E-value=2 Score=45.61 Aligned_cols=44 Identities=14% Similarity=0.192 Sum_probs=28.6
Q ss_pred cchHHHHHHHHH-HHhc-----CCCCeEE--EcCCCCcHHHHHHHHHHHHHh
Q 004880 157 KSYQLKGVKWLI-SLWQ-----NGLNGIL--ADQMGLGKTIQTIAFLAHLKG 200 (725)
Q Consensus 157 r~yQ~~gv~~l~-~~~~-----~~~~~IL--ademGlGKT~qaiali~~l~~ 200 (725)
|+.+++.+..++ .... .+...+| .-+.|+|||..+-.++..+..
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 566666665444 3322 2234567 789999999988887776654
No 172
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=84.63 E-value=3 Score=43.63 Aligned_cols=55 Identities=16% Similarity=0.084 Sum_probs=38.6
Q ss_pred HHHHHHH--HhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHHHH
Q 004880 163 GVKWLIS--LWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNW 219 (725)
Q Consensus 163 gv~~l~~--~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~~W 219 (725)
++..++. -+..|.-.+|+-+.|+|||..++.++......+ ++++++.-.....++
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g--~~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAG--GIAAFIDAEHALDPE 104 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEECCCCcCHH
Confidence 4555553 233444568899999999999999888776653 678888876655544
No 173
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=84.59 E-value=3.2 Score=46.97 Aligned_cols=58 Identities=16% Similarity=0.123 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCC------------CCCCcEEEEcCccHHHH
Q 004880 162 KGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNG------------LHGPYLVIAPLSTLSNW 219 (725)
Q Consensus 162 ~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~------------~~~~~LIV~P~sll~~W 219 (725)
..+..+......+...+|.-+.|+|||..+-+++..+.... ...|.+.++|.....+.
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~ 117 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRI 117 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHH
Confidence 33444444446788899999999999988877766543221 22566777776654443
No 174
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=84.40 E-value=1.4 Score=47.79 Aligned_cols=23 Identities=26% Similarity=0.125 Sum_probs=18.6
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q 004880 176 NGILADQMGLGKTIQTIAFLAHL 198 (725)
Q Consensus 176 ~~ILademGlGKT~qaiali~~l 198 (725)
+.||.-+.|+|||..+-++...+
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 57999999999998877666543
No 175
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.29 E-value=4.1 Score=45.04 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=20.3
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q 004880 175 LNGILADQMGLGKTIQTIAFLAHL 198 (725)
Q Consensus 175 ~~~ILademGlGKT~qaiali~~l 198 (725)
.+.+|.-+.|+|||..+-+++..+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999988887765
No 176
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=83.52 E-value=1.7 Score=44.45 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=21.1
Q ss_pred cCCCCeEEEcCCCCcHHHHHHHHHHHH
Q 004880 172 QNGLNGILADQMGLGKTIQTIAFLAHL 198 (725)
Q Consensus 172 ~~~~~~ILademGlGKT~qaiali~~l 198 (725)
..+.+.+|.-+.|+|||..+-+++..+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 345567899999999998887777654
No 177
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=83.29 E-value=4.6 Score=46.97 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=23.3
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHhC
Q 004880 173 NGLNGILADQMGLGKTIQTIAFLAHLKGN 201 (725)
Q Consensus 173 ~~~~~ILademGlGKT~qaiali~~l~~~ 201 (725)
.+.+.+|.-+.|+|||..+-+++..+...
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~~ 234 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQG 234 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHhC
Confidence 34567999999999999988888776543
No 178
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.06 E-value=0.73 Score=49.72 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=31.9
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHHHHH
Q 004880 174 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWV 220 (725)
Q Consensus 174 ~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~~W~ 220 (725)
.+|.+|.-+.|+|||+.|=+++.++. .+++.|.+..++..|.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~-----~~f~~v~~s~l~~~~v 256 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTN-----ATFLKLAAPQLVQMYI 256 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT-----CEEEEEEGGGGCSSCS
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhC-----CCEEEEehhhhhhccc
Confidence 56779999999999999888877642 3677777776666554
No 179
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=82.99 E-value=4.1 Score=47.47 Aligned_cols=95 Identities=7% Similarity=0.052 Sum_probs=66.4
Q ss_pred hcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHH----HHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEE
Q 004880 479 CGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEY----YFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLL 554 (725)
Q Consensus 479 s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~----~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Ll 554 (725)
|||-.+..-.+......|.+++|.+.....+..+.. ++...|+++..++|+++..+|...+....++ .+.|++.
T Consensus 400 SGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g--~~~IvVg 477 (780)
T 1gm5_A 400 SGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNG--QIDVVIG 477 (780)
T ss_dssp SSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSS--CCCEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcC--CCCEEEE
Confidence 788766555444445578899999998776554444 4444489999999999999999999998873 3445444
Q ss_pred ecccccCCCCCCCCCEEEEeC
Q 004880 555 STRAGGLGINLTAADTCILYD 575 (725)
Q Consensus 555 st~agg~GiNL~~a~~VI~~D 575 (725)
+.......+++...+.||+=+
T Consensus 478 T~~ll~~~~~~~~l~lVVIDE 498 (780)
T 1gm5_A 478 THALIQEDVHFKNLGLVIIDE 498 (780)
T ss_dssp CTTHHHHCCCCSCCCEEEEES
T ss_pred CHHHHhhhhhccCCceEEecc
Confidence 443444456777777777633
No 180
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=82.98 E-value=3.9 Score=42.81 Aligned_cols=52 Identities=17% Similarity=0.113 Sum_probs=37.2
Q ss_pred HHHHHHH--HhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccH
Q 004880 163 GVKWLIS--LWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTL 216 (725)
Q Consensus 163 gv~~l~~--~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll 216 (725)
++..++. -+..+.-.+|+-+.|+|||..++.++..+...+ +++++|......
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g--~~vlyid~E~s~ 103 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHAL 103 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCC
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCc
Confidence 3555542 234455568999999999999999988877653 578888875544
No 181
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=82.69 E-value=11 Score=38.32 Aligned_cols=25 Identities=28% Similarity=0.191 Sum_probs=20.7
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 004880 174 GLNGILADQMGLGKTIQTIAFLAHL 198 (725)
Q Consensus 174 ~~~~ILademGlGKT~qaiali~~l 198 (725)
..+.+|.-+.|+|||..+-++...+
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999998888776654
No 182
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=82.49 E-value=3.1 Score=42.85 Aligned_cols=38 Identities=18% Similarity=0.147 Sum_probs=25.1
Q ss_pred cchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHH
Q 004880 157 KSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAH 197 (725)
Q Consensus 157 r~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~ 197 (725)
|+.+++.+...+ ..+...+|.-+.|.|||..+-.++..
T Consensus 17 R~~el~~L~~~l---~~~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 17 REEESRKLEESL---ENYPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp CHHHHHHHHHHH---HHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH---hcCCeEEEECCCcCCHHHHHHHHHHH
Confidence 455555554333 33566789999999999776665544
No 183
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=82.26 E-value=2.8 Score=39.95 Aligned_cols=56 Identities=11% Similarity=0.005 Sum_probs=35.2
Q ss_pred HHHHHHH-HhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCc--cHHHHHHHH
Q 004880 163 GVKWLIS-LWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS--TLSNWVNEI 223 (725)
Q Consensus 163 gv~~l~~-~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~s--ll~~W~~E~ 223 (725)
++..++. -+..|.-.+|+-+.|+|||..+..++. . ..++++++.-.. ....|..-.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~~~~~~~~~~~~~~~ 66 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVDTEGGFSPERLVQMA 66 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEESSCCCCHHHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEECCCCCCHHHHHHHH
Confidence 3455542 234455568999999999988887776 2 135777777544 444555433
No 184
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=82.15 E-value=0.89 Score=50.03 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=20.3
Q ss_pred cCCCCeEEEcCCCCcHHHHHHHHHHH
Q 004880 172 QNGLNGILADQMGLGKTIQTIAFLAH 197 (725)
Q Consensus 172 ~~~~~~ILademGlGKT~qaiali~~ 197 (725)
....+.+|.-+.|+|||..+-++...
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 34456799999999999888777554
No 185
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.06 E-value=2 Score=46.26 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=30.9
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHHHH
Q 004880 173 NGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNW 219 (725)
Q Consensus 173 ~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~~W 219 (725)
..+|.+|.-+.|+|||..|=+++.++. .+++.|....++..|
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~-----~~~~~v~~~~l~~~~ 246 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTK-----AAFIRVNGSEFVHKY 246 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHT-----CEEEEEEGGGTCCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEecchhhccc
Confidence 345678999999999999988887652 366777666655544
No 186
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=81.79 E-value=2.8 Score=45.84 Aligned_cols=56 Identities=21% Similarity=0.306 Sum_probs=42.5
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCc-cHHHHHHHHHHhCCCceEEEE
Q 004880 174 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVPSVSAIIY 235 (725)
Q Consensus 174 ~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~~~v~~~ 235 (725)
+....|.--+|+|||+.+..++.. ..+|+|||||.. ...+|.+++..|+|.. |..|
T Consensus 14 ~~~~~l~g~~gs~ka~~~a~l~~~-----~~~p~lvv~~~~~~A~~l~~~l~~~~~~~-v~~f 70 (483)
T 3hjh_A 14 GEQRLLGELTGAACATLVAEIAER-----HAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNL 70 (483)
T ss_dssp TCEEEEECCCTTHHHHHHHHHHHH-----SSSCEEEEESSHHHHHHHHHHHHHTCSSC-EEEC
T ss_pred CCeEEEeCCCchHHHHHHHHHHHH-----hCCCEEEEeCCHHHHHHHHHHHHhhCCCc-EEEE
Confidence 334577888999999887776643 246899999976 5578999999998864 4443
No 187
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=81.19 E-value=6.5 Score=42.89 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=23.9
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEc
Q 004880 174 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 212 (725)
Q Consensus 174 ~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P 212 (725)
..+.+|.-++|+|||..+=+++..+ ..|++.+..
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~-----~~~f~~is~ 82 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEA-----NVPFFHISG 82 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH-----TCCEEEEEG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc-----CCCeeeCCH
Confidence 3467899999999998887776643 235555543
No 188
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=80.45 E-value=2.9 Score=41.69 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=19.3
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHH
Q 004880 175 LNGILADQMGLGKTIQTIAFLAH 197 (725)
Q Consensus 175 ~~~ILademGlGKT~qaiali~~ 197 (725)
.+.+|.-++|+|||..|-+++..
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 35689999999999998887775
No 189
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=80.42 E-value=4.1 Score=48.16 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=22.7
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHh
Q 004880 174 GLNGILADQMGLGKTIQTIAFLAHLKG 200 (725)
Q Consensus 174 ~~~~ILademGlGKT~qaiali~~l~~ 200 (725)
..+.+|.-+.|+|||..+-+++..+..
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 446799999999999998888887755
No 190
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=79.39 E-value=2.8 Score=42.55 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=24.9
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEE
Q 004880 176 NGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 211 (725)
Q Consensus 176 ~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~ 211 (725)
+.+|.-+.|+|||..+-++...+... .++++.+-
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~ 82 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRID 82 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEee
Confidence 46899999999999988887776543 23555443
No 191
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=78.39 E-value=4.2 Score=36.66 Aligned_cols=28 Identities=21% Similarity=0.156 Sum_probs=22.7
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHh
Q 004880 173 NGLNGILADQMGLGKTIQTIAFLAHLKG 200 (725)
Q Consensus 173 ~~~~~ILademGlGKT~qaiali~~l~~ 200 (725)
.+...+|.-+.|+|||..+-+++..+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4666788999999999888887776654
No 192
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=78.24 E-value=3.4 Score=38.96 Aligned_cols=35 Identities=23% Similarity=0.224 Sum_probs=26.5
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEE
Q 004880 175 LNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 211 (725)
Q Consensus 175 ~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~ 211 (725)
.+.+|.-+.|+|||..+-+++..+...+ .+++++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~--~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRN--VSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTT--CCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEE
Confidence 5678999999999999988888776543 3555443
No 193
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=76.81 E-value=6 Score=40.60 Aligned_cols=42 Identities=12% Similarity=-0.054 Sum_probs=33.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHHH
Q 004880 177 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSN 218 (725)
Q Consensus 177 ~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~~ 218 (725)
..|+-+.|+|||..++.++......+..++++.|.....+.+
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~ 72 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITP 72 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhH
Confidence 478999999999999998888776555578899888665543
No 194
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=76.69 E-value=2.8 Score=48.51 Aligned_cols=66 Identities=17% Similarity=0.069 Sum_probs=47.7
Q ss_pred cccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhC-C-CCCCcEEEEcCccH-HHHHHHHHHh
Q 004880 155 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGN-G-LHGPYLVIAPLSTL-SNWVNEISRF 226 (725)
Q Consensus 155 ~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~-~-~~~~~LIV~P~sll-~~W~~E~~~~ 226 (725)
.|-|.|.++|.. .....++-...|+|||.+.+.-++++... + ....+|+|+.+.-. ....+.+.+.
T Consensus 11 ~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 11 HLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 588999999864 24566777889999999999989988874 3 23568999986633 3344445444
No 195
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=76.56 E-value=26 Score=35.79 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=19.0
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHH
Q 004880 175 LNGILADQMGLGKTIQTIAFLAH 197 (725)
Q Consensus 175 ~~~ILademGlGKT~qaiali~~ 197 (725)
.+.+|.-+.|+|||..+-++...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 47899999999999888777554
No 196
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=76.28 E-value=13 Score=41.44 Aligned_cols=88 Identities=14% Similarity=0.109 Sum_probs=57.1
Q ss_pred hCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeC-CCCHHHHHHHHHHHhCCCCCceEEEEec--ccccCCCCCC----
Q 004880 494 ARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDG-SVRLDERKRQIQDFNDVNSSYRIFLLST--RAGGLGINLT---- 566 (725)
Q Consensus 494 ~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G-~~~~~~R~~~i~~F~~~~~~~~v~Llst--~agg~GiNL~---- 566 (725)
..++.+|||..+-..++.+... .+.++. +.| +++ +.++++.|... ++ .+|+++ ....+|||++
T Consensus 391 ~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~-~q~~~~~---~~~~~~~~~~~-~~--~vl~~v~gg~~~EGiD~~d~~g 460 (551)
T 3crv_A 391 QAKANVLVVFPSYEIMDRVMSR---ISLPKY-VESEDSS---VEDLYSAISAN-NK--VLIGSVGKGKLAEGIELRNNDR 460 (551)
T ss_dssp HCSSEEEEEESCHHHHHHHHTT---CCSSEE-ECCSSCC---HHHHHHHTTSS-SS--CEEEEESSCCSCCSSCCEETTE
T ss_pred hCCCCEEEEecCHHHHHHHHHh---cCCcEE-EcCCCCC---HHHHHHHHHhc-CC--eEEEEEecceecccccccccCC
Confidence 4566888888888877777653 344443 344 334 46678888642 22 256666 6899999999
Q ss_pred -CCCEEEEeCCCCCcchhhhHhHhhHh
Q 004880 567 -AADTCILYDSDWNPQMDLQAMDRCHR 592 (725)
Q Consensus 567 -~a~~VI~~D~~wNp~~~~Qa~gR~~R 592 (725)
.+..||+.-.|+-+. +-....|...
T Consensus 461 ~~l~~viI~~lPfp~~-dp~~~ar~~~ 486 (551)
T 3crv_A 461 SLISDVVIVGIPYPPP-DDYLKILAQR 486 (551)
T ss_dssp ESEEEEEEESCCCCCC-SHHHHHHHHH
T ss_pred cceeEEEEEcCCCCCC-CHHHHHHHHH
Confidence 588999988887444 4444444433
No 197
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=74.20 E-value=15 Score=37.66 Aligned_cols=54 Identities=19% Similarity=0.171 Sum_probs=35.9
Q ss_pred HHHHHHHH-HhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhC----CCCCCcEEEEcCcc
Q 004880 162 KGVKWLIS-LWQNGLNGILADQMGLGKTIQTIAFLAHLKGN----GLHGPYLVIAPLST 215 (725)
Q Consensus 162 ~gv~~l~~-~~~~~~~~ILademGlGKT~qaiali~~l~~~----~~~~~~LIV~P~sl 215 (725)
.++..++. -+..|.-.+|+-+.|+|||..++.++...... +..+++++|.-...
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 34555652 23445556899999999999998888764322 12467888887654
No 198
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=72.99 E-value=11 Score=39.93 Aligned_cols=93 Identities=13% Similarity=0.140 Sum_probs=65.0
Q ss_pred hcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhh---cCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEe
Q 004880 479 CGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNE---KGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLS 555 (725)
Q Consensus 479 s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~---~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Lls 555 (725)
|||-....-.+......+.++||.++....+..+...+.. .|+++..++|+++..+|...+..+..+ ...|++.+
T Consensus 47 sGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~--~~~Iiv~T 124 (414)
T 3oiy_A 47 VGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEED--DYHILVFS 124 (414)
T ss_dssp SSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHT--CCSEEEEE
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcC--CCCEEEEC
Confidence 7887644444444446788999999998888777777766 588999999999998888888888763 34454544
Q ss_pred cccccC---CCCCCCCCEEEE
Q 004880 556 TRAGGL---GINLTAADTCIL 573 (725)
Q Consensus 556 t~agg~---GiNL~~a~~VI~ 573 (725)
+...-. -+++...+.||+
T Consensus 125 p~~l~~~l~~~~~~~~~~iVi 145 (414)
T 3oiy_A 125 TQFVSKNREKLSQKRFDFVFV 145 (414)
T ss_dssp HHHHHHCHHHHTTCCCSEEEE
T ss_pred HHHHHHHHHHhccccccEEEE
Confidence 433311 144556666665
No 199
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=72.84 E-value=17 Score=36.80 Aligned_cols=35 Identities=20% Similarity=0.068 Sum_probs=24.4
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHh-CCCCCCcEEEEc
Q 004880 176 NGILADQMGLGKTIQTIAFLAHLKG-NGLHGPYLVIAP 212 (725)
Q Consensus 176 ~~ILademGlGKT~qaiali~~l~~-~~~~~~~LIV~P 212 (725)
..++.-..|.|||..+..++..+.. .| .+++++.-
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~~~G--~~V~lv~~ 142 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLEKH--KKIAFITT 142 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTC--CCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcC--CEEEEEec
Confidence 3455567899999998888877764 43 35666653
No 200
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=72.82 E-value=6.9 Score=50.04 Aligned_cols=93 Identities=18% Similarity=0.106 Sum_probs=59.6
Q ss_pred cCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHHHHHHHHHHhCCCce-EEEEeCChhhHHHHHHhcC
Q 004880 172 QNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVS-AIIYHGSKKERDEIRRKHM 250 (725)
Q Consensus 172 ~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~-v~~~~g~~~~r~~~~~~~~ 250 (725)
..+.+.+|.-+.|+|||..|++++.....+| ++++++.....+..-. .++|.-++. ..++..
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G--~~v~Fi~~e~~~~~l~--a~~~G~dl~~l~v~~~------------- 1487 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIY--ARKLGVDIDNLLCSQP------------- 1487 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEECTTSCCCHHH--HHHTTCCTTTCEEECC-------------
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEEEcccccCHHH--HHHcCCCchhceeecC-------------
Confidence 4567789999999999999999988776653 5788888876553333 445532211 111111
Q ss_pred CCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEccccccC
Q 004880 251 PRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLK 293 (725)
Q Consensus 251 ~~~~~~~~~vvItsye~~~~~~~~~l~~~~~~~vIvDEaH~ik 293 (725)
.+.+.+....+...+....++|||||...+.
T Consensus 1488 ------------~~~E~~l~~~~~lvr~~~~~lVVIDsi~al~ 1518 (2050)
T 3cmu_A 1488 ------------DTGEQALEICDALARSGAVDVIVVDSVAALT 1518 (2050)
T ss_dssp ------------SSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ------------ChHHHHHHHHHHHHhcCCCCEEEEcChhHhc
Confidence 1223444444455566789999999986443
No 201
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=72.37 E-value=22 Score=34.06 Aligned_cols=52 Identities=15% Similarity=0.077 Sum_probs=31.6
Q ss_pred HHHHHHH-HhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhC----CCCCCcEEEEcCc
Q 004880 163 GVKWLIS-LWQNGLNGILADQMGLGKTIQTIAFLAHLKGN----GLHGPYLVIAPLS 214 (725)
Q Consensus 163 gv~~l~~-~~~~~~~~ILademGlGKT~qaiali~~l~~~----~~~~~~LIV~P~s 214 (725)
++.+++. -+..|.-..|+-+.|+|||..+..++...... +..++++.+.-..
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 3445542 22344456788899999999888877653221 1235667776544
No 202
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=72.21 E-value=12 Score=39.06 Aligned_cols=40 Identities=23% Similarity=0.168 Sum_probs=31.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHHH
Q 004880 177 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSN 218 (725)
Q Consensus 177 ~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~~ 218 (725)
.+|.-+.|+|||..++.++..+...+ +++++|.+.....+
T Consensus 64 ~~I~GppGsGKSTLal~la~~~~~~g--g~VlyId~E~s~~~ 103 (356)
T 3hr8_A 64 VEIFGQESSGKTTLALHAIAEAQKMG--GVAAFIDAEHALDP 103 (356)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEecccccch
Confidence 47788899999999998888776643 67888888665543
No 203
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=71.13 E-value=18 Score=36.47 Aligned_cols=33 Identities=27% Similarity=0.319 Sum_probs=24.8
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEc
Q 004880 178 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 212 (725)
Q Consensus 178 ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P 212 (725)
.+.-..|.|||..+..++..+... .++++++.-
T Consensus 102 ~i~g~~G~GKTT~~~~la~~~~~~--~~~v~l~~~ 134 (295)
T 1ls1_A 102 FLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAA 134 (295)
T ss_dssp EEECCTTTTHHHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHc--CCeEEEecC
Confidence 445689999999988888777654 367777764
No 204
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=70.85 E-value=30 Score=32.07 Aligned_cols=38 Identities=29% Similarity=0.420 Sum_probs=27.5
Q ss_pred cCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEc--CccHHHHH
Q 004880 181 DQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP--LSTLSNWV 220 (725)
Q Consensus 181 demGlGKT~qaiali~~l~~~~~~~~~LIV~P--~sll~~W~ 220 (725)
---|.|||..++.++..+...| .++++|-- ...+..|.
T Consensus 9 ~kgG~GKTt~a~~la~~la~~g--~~vlliD~D~~~~~~~~~ 48 (206)
T 4dzz_A 9 PKGGSGKTTAVINIATALSRSG--YNIAVVDTDPQMSLTNWS 48 (206)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHCC--CeEEEEECCCCCCHHHHH
Confidence 4568999999999999888764 46777763 34445554
No 205
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=69.96 E-value=6.4 Score=40.20 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=28.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHH-hCCCCCCcEEEE
Q 004880 174 GLNGILADQMGLGKTIQTIAFLAHLK-GNGLHGPYLVIA 211 (725)
Q Consensus 174 ~~~~ILademGlGKT~qaiali~~l~-~~~~~~~~LIV~ 211 (725)
+.+.+|.-++|+|||..+.+++..+. ..+ .+++++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g--~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKG--VSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSC--CCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcC--CcEEEEE
Confidence 46779999999999999999998887 654 3555443
No 206
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=69.43 E-value=25 Score=35.96 Aligned_cols=33 Identities=21% Similarity=0.136 Sum_probs=24.8
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEc
Q 004880 178 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 212 (725)
Q Consensus 178 ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P 212 (725)
.+.-..|.|||..+..++..+... .++++++.-
T Consensus 109 ~ivG~~G~GKTT~~~~LA~~l~~~--g~kVllid~ 141 (320)
T 1zu4_A 109 MLVGVNGTGKTTSLAKMANYYAEL--GYKVLIAAA 141 (320)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeC
Confidence 455679999999988888777665 367777754
No 207
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=69.19 E-value=7.2 Score=45.31 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=21.2
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHh
Q 004880 176 NGILADQMGLGKTIQTIAFLAHLKG 200 (725)
Q Consensus 176 ~~ILademGlGKT~qaiali~~l~~ 200 (725)
+.+|.-++|+|||..|-++...+..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~ 547 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFG 547 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3789999999999999888877754
No 208
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=68.31 E-value=16 Score=37.16 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=24.3
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEc
Q 004880 178 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 212 (725)
Q Consensus 178 ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P 212 (725)
.+.-..|+|||..+..++..+... .++++++.-
T Consensus 108 ~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~ 140 (306)
T 1vma_A 108 MVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAA 140 (306)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEE
T ss_pred EEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEcc
Confidence 456679999999988888777664 356666654
No 209
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=67.40 E-value=11 Score=42.80 Aligned_cols=55 Identities=22% Similarity=0.315 Sum_probs=36.9
Q ss_pred CCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCc
Q 004880 153 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS 214 (725)
Q Consensus 153 ~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~s 214 (725)
.+.+.+-|.+++..+.... .+. .+|-.+-|-|||..+..+++.+. +.++|.+|..
T Consensus 173 ~~~~T~dQ~~al~~~~~~~-~~~-~vlta~RGRGKSa~lG~~~a~~~-----~~~~vtAP~~ 227 (671)
T 2zpa_A 173 TGAPQPEQQQLLKQLMTMP-PGV-AAVTAARGRGKSALAGQLISRIA-----GRAIVTAPAK 227 (671)
T ss_dssp CSSCCHHHHHHHHHHTTCC-SEE-EEEEECTTSSHHHHHHHHHHHSS-----SCEEEECSSC
T ss_pred CCCCCHHHHHHHHHHHHhh-hCe-EEEecCCCCCHHHHHHHHHHHHH-----hCcEEECCCH
Confidence 3467889999998887532 222 36666699999965555555443 2468888854
No 210
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=67.03 E-value=22 Score=38.84 Aligned_cols=60 Identities=5% Similarity=-0.081 Sum_probs=42.0
Q ss_pred HHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHHHHHHHH
Q 004880 163 GVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEI 223 (725)
Q Consensus 163 gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~~W~~E~ 223 (725)
++..++.-+..|.-.+|+-..|+|||.-++.++..+... ...++++++--....+....+
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~s~~~l~~r~ 290 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEESVEETAEDL 290 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSSCHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccCCHHHHHHHH
Confidence 345555334555557999999999999999888877653 135899998866555555443
No 211
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=66.06 E-value=8.6 Score=41.38 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=26.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEc
Q 004880 177 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 212 (725)
Q Consensus 177 ~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P 212 (725)
.+++-..|.|||.++..++.++...+ ..++++|.-
T Consensus 103 I~ivG~~GvGKTT~a~~LA~~l~~~~-G~kVllvd~ 137 (433)
T 2xxa_A 103 VLMAGLQGAGKTTSVGKLGKFLREKH-KKKVLVVSA 137 (433)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTS-CCCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhc-CCeEEEEec
Confidence 34556799999999999999888761 246777664
No 212
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=65.72 E-value=4.7 Score=49.70 Aligned_cols=60 Identities=15% Similarity=0.082 Sum_probs=44.4
Q ss_pred ccCCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCC----CCCCcEEEEcCccH
Q 004880 151 LTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNG----LHGPYLVIAPLSTL 216 (725)
Q Consensus 151 ~~~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~----~~~~~LIV~P~sll 216 (725)
..+.+|.|-|..+|.. .+.+.++...-|+|||.+.+.-+.++...+ ....+|||+++...
T Consensus 6 ~~~~~~t~eQ~~~i~~------~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~a 69 (1232)
T 3u4q_A 6 PADSTWTDDQWNAIVS------TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNAS 69 (1232)
T ss_dssp ----CCCHHHHHHHHC------CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHH
T ss_pred CCCCCCCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHH
Confidence 3456899999988753 366889999999999999988888877654 23468999997543
No 213
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=65.21 E-value=70 Score=32.28 Aligned_cols=24 Identities=13% Similarity=-0.032 Sum_probs=19.2
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q 004880 175 LNGILADQMGLGKTIQTIAFLAHL 198 (725)
Q Consensus 175 ~~~ILademGlGKT~qaiali~~l 198 (725)
...+|.-+.|.|||..+-.++..+
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc
Confidence 467888999999998877776654
No 214
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=64.46 E-value=24 Score=43.07 Aligned_cols=93 Identities=12% Similarity=0.069 Sum_probs=66.8
Q ss_pred hcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHh----hcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEE
Q 004880 479 CGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFN----EKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLL 554 (725)
Q Consensus 479 s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~----~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Ll 554 (725)
+||-.......-.....|.+++|.+..+..+......+. ..++.+..++|..+..++...+..... +.+.|++.
T Consensus 635 sGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~--g~~dIvV~ 712 (1151)
T 2eyq_A 635 FGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAE--GKIDILIG 712 (1151)
T ss_dssp TTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHT--TCCSEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhc--CCCCEEEE
Confidence 678765544444445678899999998876665555544 347889999999999999999998886 34556555
Q ss_pred ecccccCCCCCCCCCEEEE
Q 004880 555 STRAGGLGINLTAADTCIL 573 (725)
Q Consensus 555 st~agg~GiNL~~a~~VI~ 573 (725)
+.......+++...+.||+
T Consensus 713 T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 713 THKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp CTHHHHSCCCCSSEEEEEE
T ss_pred CHHHHhCCccccccceEEE
Confidence 5566666677777776665
No 215
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=62.53 E-value=17 Score=45.79 Aligned_cols=102 Identities=17% Similarity=0.082 Sum_probs=62.6
Q ss_pred HHHHHHH--HhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHHHHHHHHHHhCCCc-eEEEEeCCh
Q 004880 163 GVKWLIS--LWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSV-SAIIYHGSK 239 (725)
Q Consensus 163 gv~~l~~--~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~-~v~~~~g~~ 239 (725)
.+..++. -+..+...+|+-+.|+|||..++.++......+ ++++++.-.....+.. ..++.-+. ++.+.
T Consensus 719 eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g--~~VlyiS~Ees~~ql~--A~~lGvd~~~L~i~---- 790 (1706)
T 3cmw_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIY--ARKLGVDIDNLLCS---- 790 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEECTTSCCCHHH--HHHTTCCGGGCEEE----
T ss_pred HHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcC--CCeEEEeccchHHHHH--HHHcCCChhheEEe----
Confidence 3555553 345556679999999999999999988877643 5788887655544432 22221111 00000
Q ss_pred hhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEccccccC
Q 004880 240 KERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLK 293 (725)
Q Consensus 240 ~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~l~~~~~~~vIvDEaH~ik 293 (725)
--++.+.+...++........++||||+...+.
T Consensus 791 ---------------------~~~~leei~~~l~~lv~~~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 791 ---------------------QPDTGEQALEICDALARSGAVDVIVVDSVAALT 823 (1706)
T ss_dssp ---------------------CCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred ---------------------cCCcHHHHHHHHHHHHHccCCCEEEEechhhhc
Confidence 012334444444445556789999999999886
No 216
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=62.39 E-value=15 Score=37.68 Aligned_cols=25 Identities=20% Similarity=-0.023 Sum_probs=20.3
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHH
Q 004880 173 NGLNGILADQMGLGKTIQTIAFLAH 197 (725)
Q Consensus 173 ~~~~~ILademGlGKT~qaiali~~ 197 (725)
.+...+|.-+.|+|||..++.++..
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3444589999999999999988765
No 217
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=62.35 E-value=35 Score=36.39 Aligned_cols=34 Identities=26% Similarity=0.270 Sum_probs=25.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEc
Q 004880 177 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 212 (725)
Q Consensus 177 ~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P 212 (725)
..++-..|.|||..+..++..+... .++++++.-
T Consensus 101 i~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~ 134 (425)
T 2ffh_A 101 WFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAA 134 (425)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeec
Confidence 3455789999999998888877765 367777774
No 218
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=60.06 E-value=8.2 Score=44.94 Aligned_cols=41 Identities=20% Similarity=0.304 Sum_probs=27.5
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHHHH
Q 004880 174 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNW 219 (725)
Q Consensus 174 ~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~~W 219 (725)
..+.+|.-+.|+|||+.|-+++..+ ..+++.|....++..|
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~-----~~~f~~v~~~~l~s~~ 551 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANEC-----QANFISIKGPELLTMW 551 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTT-----TCEEEECCHHHHHTTT
T ss_pred CceEEEecCCCCCchHHHHHHHHHh-----CCceEEeccchhhccc
Confidence 4567999999999998877766543 2355555554454444
No 219
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=59.64 E-value=40 Score=34.73 Aligned_cols=53 Identities=13% Similarity=-0.028 Sum_probs=34.4
Q ss_pred HHHHHHH-HhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhC----CCCCCcEEEEcCcc
Q 004880 163 GVKWLIS-LWQNGLNGILADQMGLGKTIQTIAFLAHLKGN----GLHGPYLVIAPLST 215 (725)
Q Consensus 163 gv~~l~~-~~~~~~~~ILademGlGKT~qaiali~~l~~~----~~~~~~LIV~P~sl 215 (725)
++..++. -+..|.-.+|+-+.|+|||..++.++...... +..+++++|.-...
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 3555552 22333445899999999999988887763221 13467888887654
No 220
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=59.05 E-value=21 Score=36.60 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=26.9
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEc
Q 004880 178 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 212 (725)
Q Consensus 178 ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P 212 (725)
+..---|.|||.+|.+++..+...| .++|+|-.
T Consensus 18 v~sgKGGvGKTTvA~~LA~~lA~~G--~rVLlvD~ 50 (324)
T 3zq6_A 18 FIGGKGGVGKTTISAATALWMARSG--KKTLVIST 50 (324)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEEC
T ss_pred EEeCCCCchHHHHHHHHHHHHHHCC--CcEEEEeC
Confidence 5667789999999999998888763 57888775
No 221
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=58.86 E-value=24 Score=42.84 Aligned_cols=93 Identities=13% Similarity=0.140 Sum_probs=67.4
Q ss_pred hcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhh---cCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEe
Q 004880 479 CGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNE---KGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLS 555 (725)
Q Consensus 479 s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~---~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Lls 555 (725)
|||-.+..-.+......+.++||.++.+..+..+...|.. .|+++..++|+++..+|...+..+..+ ...|++.+
T Consensus 104 SGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g--~~~IlV~T 181 (1104)
T 4ddu_A 104 VGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEED--DYHILVFS 181 (1104)
T ss_dssp CCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTS--CCSEEEEE
T ss_pred CcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCC--CCCEEEEC
Confidence 7888766555555557889999999999988877777776 578999999999988888888888863 34454444
Q ss_pred cccccC---CCCCCCCCEEEE
Q 004880 556 TRAGGL---GINLTAADTCIL 573 (725)
Q Consensus 556 t~agg~---GiNL~~a~~VI~ 573 (725)
+...-. -+++...+.||+
T Consensus 182 p~rL~~~l~~l~~~~l~~lVi 202 (1104)
T 4ddu_A 182 TQFVSKNREKLSQKRFDFVFV 202 (1104)
T ss_dssp HHHHHHSHHHHHTSCCSEEEE
T ss_pred HHHHHHHHHhhcccCcCEEEE
Confidence 433211 144566777766
No 222
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=58.74 E-value=23 Score=45.44 Aligned_cols=102 Identities=17% Similarity=0.057 Sum_probs=66.5
Q ss_pred HHHHHHHH--HhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHHHHHHHHHHhCCCceEEEEeCCh
Q 004880 162 KGVKWLIS--LWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIYHGSK 239 (725)
Q Consensus 162 ~gv~~l~~--~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~v~~~~g~~ 239 (725)
..+.+++. -+..+.-.+|+-+.|.|||.-++.++..+... .+++++|.-.....+|.. .++. +.
T Consensus 718 ~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~--g~~VlyiS~Ees~~ql~A--~rlG--~~-------- 783 (2050)
T 3cmu_A 718 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIYA--RKLG--VD-------- 783 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHHH--HHTT--CC--------
T ss_pred hHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEECCCcHHHHHH--HHcC--CC--------
Confidence 34666663 34445556899999999999999988877654 358999998888888852 2221 00
Q ss_pred hhHHHHHHhcCCCCCCCCCCEEE---ecHHHHHHHHHHhhhhcCccEEEEccccccCC
Q 004880 240 KERDEIRRKHMPRAIGPKFPIVV---TSYEVALSDARKYLRHYNWKYLVVDEGHRLKN 294 (725)
Q Consensus 240 ~~r~~~~~~~~~~~~~~~~~vvI---tsye~~~~~~~~~l~~~~~~~vIvDEaH~ikn 294 (725)
..++.+ ++.+.+...++.......+++||||..+.+..
T Consensus 784 -----------------~~~l~i~~~~~i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~ 824 (2050)
T 3cmu_A 784 -----------------IDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 824 (2050)
T ss_dssp -----------------TTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred -----------------ccceEEecCCCHHHHHHHHHHHhhccCCCEEEEcchhhhcc
Confidence 011222 23444444444444456789999999888764
No 223
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=58.39 E-value=41 Score=30.18 Aligned_cols=80 Identities=10% Similarity=0.010 Sum_probs=53.5
Q ss_pred cHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhc----CceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEe
Q 004880 480 GKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEK----GYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLS 555 (725)
Q Consensus 480 ~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~----g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Lls 555 (725)
.+.....+++.+....|.||+|+|.....++.|-+.|-.. -++... .|.-. .....| +|+
T Consensus 23 ~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~~-~~~~~--------------~~~~PV-~L~ 86 (150)
T 3sxu_A 23 AVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNL-AGEGP--------------RGGAPV-EIA 86 (150)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEEE-TTCSS--------------TTCCSE-EEE
T ss_pred HHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCcc-CCCCC--------------CCCCCE-EEe
Confidence 3677788999999999999999999999999999999754 233433 23222 112234 555
Q ss_pred cccccCCCCCCCCCEEEEeCCCC
Q 004880 556 TRAGGLGINLTAADTCILYDSDW 578 (725)
Q Consensus 556 t~agg~GiNL~~a~~VI~~D~~w 578 (725)
+... .+-..++.+|+++..+
T Consensus 87 ~~~~---~~~~~~~vLinL~~~~ 106 (150)
T 3sxu_A 87 WPQK---RSSSRRDILISLRTSF 106 (150)
T ss_dssp CTTS---CCCSCCSEEEECCSSC
T ss_pred CCCC---CCCCcCCEEEECCCCC
Confidence 4211 1123577888888876
No 224
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=56.60 E-value=25 Score=38.42 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=18.5
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHH
Q 004880 175 LNGILADQMGLGKTIQTIAFLAH 197 (725)
Q Consensus 175 ~~~ILademGlGKT~qaiali~~ 197 (725)
.+.+|.-+.|+|||..+=+++..
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999887766654
No 225
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=56.20 E-value=8.4 Score=41.72 Aligned_cols=42 Identities=24% Similarity=0.235 Sum_probs=30.6
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHHHH
Q 004880 175 LNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNW 219 (725)
Q Consensus 175 ~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~~W 219 (725)
.+.+|.-++|+|||..|-+++..+.. ..+++.+....+...|
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l~~---~~~~~~~~~~~~~~~~ 105 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQELGS---KVPFCPMVGSEVYSTE 105 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCT---TSCEEEEEGGGGCCSS
T ss_pred CeEEEECCCcCCHHHHHHHHHHHhCC---CceEEEEeHHHHHHHh
Confidence 56799999999999999988887632 2466666665554443
No 226
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=55.58 E-value=26 Score=35.82 Aligned_cols=19 Identities=32% Similarity=0.281 Sum_probs=16.0
Q ss_pred CCCcHHHHHHHHHHHHHhC
Q 004880 183 MGLGKTIQTIAFLAHLKGN 201 (725)
Q Consensus 183 mGlGKT~qaiali~~l~~~ 201 (725)
=|+|||=.++.++..+...
T Consensus 47 GGTGKTP~vi~L~~~L~~~ 65 (315)
T 4ehx_A 47 GGSGKTSFVMYLADLLKDK 65 (315)
T ss_dssp SCCSHHHHHHHHHHHTTTS
T ss_pred CCCChHHHHHHHHHHHhhc
Confidence 5899999999999888643
No 227
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=55.34 E-value=9.2 Score=37.15 Aligned_cols=26 Identities=15% Similarity=0.307 Sum_probs=22.7
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCC
Q 004880 178 ILADQMGLGKTIQTIAFLAHLKGNGL 203 (725)
Q Consensus 178 ILademGlGKT~qaiali~~l~~~~~ 203 (725)
|-+-++|.|||..+++++..+..+|.
T Consensus 9 Itgt~t~vGKT~vt~~L~~~l~~~G~ 34 (228)
T 3of5_A 9 IIGTDTEVGKTYISTKLIEVCEHQNI 34 (228)
T ss_dssp EEESSSSSCHHHHHHHHHHHHHHTTC
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHCCC
Confidence 56778999999999999999988763
No 228
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=54.96 E-value=56 Score=27.30 Aligned_cols=100 Identities=10% Similarity=-0.028 Sum_probs=58.9
Q ss_pred HHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCC--CCCceEEEEecccccCCCCCC
Q 004880 489 LARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDV--NSSYRIFLLSTRAGGLGINLT 566 (725)
Q Consensus 489 l~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~--~~~~~v~Llst~agg~GiNL~ 566 (725)
+..++..+..+..++.....+..+ ....+.++.++-.++...-.+++...+.. ...+.|++++...-..-....
T Consensus 20 l~~~l~~~~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~ 95 (133)
T 3nhm_A 20 LRLLLSGEFDCTTAADGASGLQQA----LAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPAD 95 (133)
T ss_dssp HHHHHTTTSEEEEESSHHHHHHHH----HHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TT
T ss_pred HHHHHhCCcEEEEECCHHHHHHHH----hcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHh
Confidence 334444677777776655555544 34567888888776655555666666542 236677777765322222221
Q ss_pred --CCCEEEEeCCCCCcchhhhHhHhhHhcC
Q 004880 567 --AADTCILYDSDWNPQMDLQAMDRCHRIG 594 (725)
Q Consensus 567 --~a~~VI~~D~~wNp~~~~Qa~gR~~RiG 594 (725)
+++. ++--|+++....+++.++.+-+
T Consensus 96 ~~g~~~--~l~KP~~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 96 QPVPDA--YLVKPVKPPVLIAQLHALLARA 123 (133)
T ss_dssp SCCCSE--EEESSCCHHHHHHHHHHHHHHH
T ss_pred hcCCce--EEeccCCHHHHHHHHHHHHhhh
Confidence 3333 3345889999999988886644
No 229
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=54.79 E-value=9.6 Score=37.43 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=23.0
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCC
Q 004880 178 ILADQMGLGKTIQTIAFLAHLKGNGL 203 (725)
Q Consensus 178 ILademGlGKT~qaiali~~l~~~~~ 203 (725)
|.+-++|.|||..+++++..+..+|.
T Consensus 26 ItgT~t~vGKT~vs~gL~~~L~~~G~ 51 (242)
T 3qxc_A 26 ISATNTNAGKTTCARLLAQYCNACGV 51 (242)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEeCCCCCcHHHHHHHHHHHHHhCCC
Confidence 67788999999999999999998763
No 230
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=54.57 E-value=77 Score=26.80 Aligned_cols=74 Identities=8% Similarity=-0.050 Sum_probs=32.5
Q ss_pred cCceEEEEeCCCCHHHHHHHHHHHhC--CCCCceEEEEecccccCC-CCCCCCCEEEEeCCCCCcchhhhHhHhhHh
Q 004880 519 KGYEVCRIDGSVRLDERKRQIQDFND--VNSSYRIFLLSTRAGGLG-INLTAADTCILYDSDWNPQMDLQAMDRCHR 592 (725)
Q Consensus 519 ~g~~~~~l~G~~~~~~R~~~i~~F~~--~~~~~~v~Llst~agg~G-iNL~~a~~VI~~D~~wNp~~~~Qa~gR~~R 592 (725)
..+.++.++-.++...-.+.+...+. ..+.+.|++++......- .....+...-++.-|.++....+++.++.+
T Consensus 50 ~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 50 GFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp CCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHH
Confidence 34556666654443223334444433 234455555554432211 111122222233445666666666665544
No 231
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=54.46 E-value=11 Score=36.50 Aligned_cols=45 Identities=16% Similarity=0.074 Sum_probs=30.8
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHHHHH
Q 004880 176 NGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWV 220 (725)
Q Consensus 176 ~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~~W~ 220 (725)
+.++.-..|.|||..++.++..+...|..--+..+-|-.-...|.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~a 52 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEA 52 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHH
Confidence 468889999999999999999998875321122333433445554
No 232
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=54.39 E-value=9.7 Score=46.65 Aligned_cols=51 Identities=18% Similarity=0.153 Sum_probs=38.4
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCC-CCcEEEEcCccHHHHHHHHHHhCC
Q 004880 178 ILADQMGLGKTIQTIAFLAHLKGNGLH-GPYLVIAPLSTLSNWVNEISRFVP 228 (725)
Q Consensus 178 ILademGlGKT~qaiali~~l~~~~~~-~~~LIV~P~sll~~W~~E~~~~~p 228 (725)
++-...|+|||.+++.-++++...+.. .++|+|||....-+....+....+
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt~~~rl~~~l~ 56 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFLMEYELAKTPD 56 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHHHHHHHHTCCSS
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccHHHHHHHHHhhh
Confidence 344458999999999999988876554 689999998876665666655443
No 233
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=54.16 E-value=46 Score=27.70 Aligned_cols=67 Identities=10% Similarity=0.077 Sum_probs=44.6
Q ss_pred HHHHHHhhCCCcEEEEcc------chhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEec
Q 004880 487 RLLARLFARNHKVLVFSQ------WTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLST 556 (725)
Q Consensus 487 ~ll~~l~~~~~kvlIFsq------~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst 556 (725)
+.+..+. ..++|+||+. +.........+|...|++|..++=......+..+.+... ...+.++++.-
T Consensus 9 ~~v~~~i-~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g--~~tvP~ifi~g 81 (109)
T 3ipz_A 9 DTLEKLV-NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSN--WPTFPQLYIGG 81 (109)
T ss_dssp HHHHHHH-TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHT--CSSSCEEEETT
T ss_pred HHHHHHH-ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHC--CCCCCeEEECC
Confidence 3444443 3578999987 578899999999999999988876555555555544333 24444445543
No 234
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=54.05 E-value=19 Score=31.06 Aligned_cols=45 Identities=9% Similarity=0.014 Sum_probs=36.6
Q ss_pred EEEEccchhH-------HHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHh
Q 004880 499 VLVFSQWTKI-------LDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFN 543 (725)
Q Consensus 499 vlIFsq~~~~-------ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~ 543 (725)
|.||+..... ...+..+|..+|++|.-++=++..+.|.++.++.+
T Consensus 2 V~vYtt~~c~~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred EEEEecCCCCCccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhcc
Confidence 5667654432 26788899999999999999999999999999984
No 235
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=53.58 E-value=30 Score=28.30 Aligned_cols=90 Identities=11% Similarity=0.039 Sum_probs=45.5
Q ss_pred CCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccCCCCC--CCCCEEE
Q 004880 495 RNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINL--TAADTCI 572 (725)
Q Consensus 495 ~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~GiNL--~~a~~VI 572 (725)
.|..+..++.....+..+ ....+..+.+|-.++...-.+.++..+...+...++++|...... ... .+|+..
T Consensus 24 ~~~~v~~~~~~~~a~~~~----~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~-~~~~~~g~~~~- 97 (116)
T 3a10_A 24 EGYEIDTAENGEEALKKF----FSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYR-SDMSSWAADEY- 97 (116)
T ss_dssp TTCEEEEESSHHHHHHHH----HHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCGGGG-GCGGGGGSSEE-
T ss_pred CCCEEEEeCCHHHHHHHH----hcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECCcchH-HHHHhccccce-
Confidence 456665555444444333 334567777776654333334444444323455666666543222 222 133333
Q ss_pred EeCCCCCcchhhhHhHhhH
Q 004880 573 LYDSDWNPQMDLQAMDRCH 591 (725)
Q Consensus 573 ~~D~~wNp~~~~Qa~gR~~ 591 (725)
+--|+++....+++.++.
T Consensus 98 -l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 98 -VVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp -EECCSSTHHHHHHHHHHT
T ss_pred -EECCCCHHHHHHHHHHHh
Confidence 335677777777776654
No 236
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=53.22 E-value=54 Score=26.89 Aligned_cols=65 Identities=17% Similarity=0.076 Sum_probs=44.5
Q ss_pred HHHHHHhhCCCcEEEEc------cchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEE
Q 004880 487 RLLARLFARNHKVLVFS------QWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLL 554 (725)
Q Consensus 487 ~ll~~l~~~~~kvlIFs------q~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Ll 554 (725)
+.+..+.. .++|+||+ .+......+..+|...|++|..++=......+..+...+.. ..+.++++
T Consensus 8 ~~~~~~i~-~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~--~~vP~v~i 78 (105)
T 2yan_A 8 ERLKVLTN-KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNW--PTYPQLYV 78 (105)
T ss_dssp HHHHHHHT-SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTC--CSSCEEEE
T ss_pred HHHHHHhc-cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCC--CCCCeEEE
Confidence 33444444 44788897 46677888999999999999999887776666666655543 34544444
No 237
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=53.16 E-value=51 Score=27.64 Aligned_cols=67 Identities=12% Similarity=0.127 Sum_probs=44.2
Q ss_pred HHHHHHhhCCCcEEEEcc------chhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEec
Q 004880 487 RLLARLFARNHKVLVFSQ------WTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLST 556 (725)
Q Consensus 487 ~ll~~l~~~~~kvlIFsq------~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst 556 (725)
..+..+. ..++|+||+. +.........+|...|++|..++=....+.|..+.+ +.. ...+.++.+.-
T Consensus 7 ~~v~~~i-~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~-~~g-~~tvP~ifi~g 79 (111)
T 3zyw_A 7 LRLKKLT-HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKA-YSS-WPTYPQLYVSG 79 (111)
T ss_dssp HHHHHHH-TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH-HHT-CCSSCEEEETT
T ss_pred HHHHHHH-hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHH-HHC-CCCCCEEEECC
Confidence 3344443 3678999984 667888999999999999998876666555555544 332 24454545443
No 238
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=52.56 E-value=64 Score=27.51 Aligned_cols=59 Identities=7% Similarity=-0.001 Sum_probs=41.1
Q ss_pred CCcEEEEcc------chhHHHHHHHHHhhcCce---EEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEec
Q 004880 496 NHKVLVFSQ------WTKILDIMEYYFNEKGYE---VCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLST 556 (725)
Q Consensus 496 ~~kvlIFsq------~~~~ld~l~~~L~~~g~~---~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst 556 (725)
.++|+||+. +.........+|...|++ |..++=....+.|..+.+... ...+..+.+.-
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg--~~tvP~vfI~g 82 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSE--WPTIPQLYVNK 82 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHT--CCSSCEEEETT
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhC--CCCCCeEEECC
Confidence 578999988 577888999999999998 888877666655555544333 24444444443
No 239
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=52.13 E-value=11 Score=37.18 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=23.0
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCC
Q 004880 178 ILADQMGLGKTIQTIAFLAHLKGNGL 203 (725)
Q Consensus 178 ILademGlGKT~qaiali~~l~~~~~ 203 (725)
|-+-++|.|||..+++++..+..+|.
T Consensus 31 Itgt~t~vGKT~vt~gL~~~l~~~G~ 56 (251)
T 3fgn_A 31 VTGTGTGVGKTVVCAALASAARQAGI 56 (251)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHCCC
Confidence 67788999999999999999988763
No 240
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=51.72 E-value=9.3 Score=39.13 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHH
Q 004880 163 GVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL 198 (725)
Q Consensus 163 gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l 198 (725)
.+..+...+..+.+.+|.-+.|+|||..+-++...+
T Consensus 35 ~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 35 MINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 344444434457889999999999998887766544
No 241
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=51.56 E-value=17 Score=29.59 Aligned_cols=89 Identities=13% Similarity=0.066 Sum_probs=42.1
Q ss_pred CCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCC--CCceEEEEecccccCCCCCC--CCCE
Q 004880 495 RNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVN--SSYRIFLLSTRAGGLGINLT--AADT 570 (725)
Q Consensus 495 ~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~--~~~~v~Llst~agg~GiNL~--~a~~ 570 (725)
.|..+..++.....++.+. ...+..+.++-.++...-.+.+...+... ..+.+++++...... ... +++.
T Consensus 24 ~g~~v~~~~~~~~~~~~l~----~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~--~~~~~g~~~ 97 (119)
T 2j48_A 24 AGFKVIWLVDGSTALDQLD----LLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVD--PLLTAQASA 97 (119)
T ss_dssp TTCEEEEESCHHHHHHHHH----HHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSS--HHHHHHCSE
T ss_pred CCcEEEEecCHHHHHHHHH----hcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCch--hhhhcCHHH
Confidence 4556665554444444333 33466667766554333334444444321 345555555543322 211 2222
Q ss_pred EEEeCCCCCcchhhhHhHhhH
Q 004880 571 CILYDSDWNPQMDLQAMDRCH 591 (725)
Q Consensus 571 VI~~D~~wNp~~~~Qa~gR~~ 591 (725)
++.-|.++....+++.++.
T Consensus 98 --~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 98 --ILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp --ECSSCSTTHHHHHHHHTTC
T ss_pred --hccCCCCHHHHHHHHHHHh
Confidence 3344666666666665543
No 242
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=51.18 E-value=18 Score=42.13 Aligned_cols=40 Identities=20% Similarity=0.172 Sum_probs=24.9
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHHH
Q 004880 174 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSN 218 (725)
Q Consensus 174 ~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~~ 218 (725)
.+|.+|.-+.|+|||..+=+++..+ ..+++.|....++..
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~el-----g~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANET-----GAFFFLINGPEIMSK 277 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTT-----TCEEEEEEHHHHHSS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh-----CCeEEEEEhHHhhcc
Confidence 4567899999999997776655432 234554444444433
No 243
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=50.96 E-value=62 Score=32.57 Aligned_cols=33 Identities=18% Similarity=0.116 Sum_probs=24.8
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEc
Q 004880 178 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 212 (725)
Q Consensus 178 ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P 212 (725)
++.-..|.|||..+..++..+... .++++++.-
T Consensus 102 ~i~G~~G~GKTT~~~~la~~~~~~--g~~v~l~~~ 134 (297)
T 1j8m_F 102 MLVGVQGTGKTTTAGKLAYFYKKK--GFKVGLVGA 134 (297)
T ss_dssp EEECSSCSSTTHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEec
Confidence 455689999999988888777665 357777765
No 244
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=50.47 E-value=41 Score=34.08 Aligned_cols=54 Identities=17% Similarity=0.112 Sum_probs=34.3
Q ss_pred HHHHHHHH-HhcCCCCeEEEcCCCCcHHHHHHHHHHHHH-h-----------CC-C-CCCcEEEEcCcc
Q 004880 162 KGVKWLIS-LWQNGLNGILADQMGLGKTIQTIAFLAHLK-G-----------NG-L-HGPYLVIAPLST 215 (725)
Q Consensus 162 ~gv~~l~~-~~~~~~~~ILademGlGKT~qaiali~~l~-~-----------~~-~-~~~~LIV~P~sl 215 (725)
.++.+++. -+..|.-.+|+-+.|+|||..++.++.... . .| . .+++++|.-...
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~ 153 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT 153 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence 34556652 223344468999999999999988887532 1 11 1 157888887554
No 245
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=49.85 E-value=33 Score=35.79 Aligned_cols=32 Identities=13% Similarity=0.111 Sum_probs=25.1
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEE
Q 004880 178 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 211 (725)
Q Consensus 178 ILademGlGKT~qaiali~~l~~~~~~~~~LIV~ 211 (725)
+..---|.|||..|+.++..+...| .++|+|-
T Consensus 148 v~s~KGGvGKTT~a~nLA~~La~~g--~rVlliD 179 (373)
T 3fkq_A 148 FTSPCGGVGTSTVAAACAIAHANMG--KKVFYLN 179 (373)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHHT--CCEEEEE
T ss_pred EECCCCCChHHHHHHHHHHHHHhCC--CCEEEEE
Confidence 4445789999999999988887753 4788776
No 246
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=49.55 E-value=28 Score=29.14 Aligned_cols=96 Identities=10% Similarity=0.008 Sum_probs=54.0
Q ss_pred CCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCC--CCCceEEEEecccccCCCCC--CCCCE
Q 004880 495 RNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDV--NSSYRIFLLSTRAGGLGINL--TAADT 570 (725)
Q Consensus 495 ~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~--~~~~~v~Llst~agg~GiNL--~~a~~ 570 (725)
.|..|..++.....++.+ ....+.++.+|-.++...-.+++...+.. ...+.+++++......-... .+|+.
T Consensus 26 ~g~~v~~~~~~~~a~~~l----~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~~ 101 (127)
T 3i42_A 26 LGFQADYVMSGTDALHAM----STRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFDF 101 (127)
T ss_dssp TTEEEEEESSHHHHHHHH----HHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCSE
T ss_pred cCCCEEEECCHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhHH
Confidence 466666666555444444 34567888888766654555566666543 35666767765543322111 12333
Q ss_pred EEEeCCCCCcchhhhHhHhhHhcCCC
Q 004880 571 CILYDSDWNPQMDLQAMDRCHRIGQT 596 (725)
Q Consensus 571 VI~~D~~wNp~~~~Qa~gR~~RiGQ~ 596 (725)
++--|.++....+++.++++-++.
T Consensus 102 --~l~KP~~~~~L~~~i~~~~~~~~~ 125 (127)
T 3i42_A 102 --YLEKPIDIASLEPILQSIEGHHHH 125 (127)
T ss_dssp --EEESSCCHHHHHHHHHHHC-----
T ss_pred --heeCCCCHHHHHHHHHHhhccCCC
Confidence 445678888888888888776543
No 247
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=49.36 E-value=1.2e+02 Score=31.75 Aligned_cols=107 Identities=11% Similarity=0.103 Sum_probs=64.7
Q ss_pred hcHHHHHHHHHHHHh-hCCCcEEEEccchhHHHHHHHHHhhc-Cc---eEEEEeCCCCHHHHHHHHHHHhCCCCCceEEE
Q 004880 479 CGKFRLLDRLLARLF-ARNHKVLVFSQWTKILDIMEYYFNEK-GY---EVCRIDGSVRLDERKRQIQDFNDVNSSYRIFL 553 (725)
Q Consensus 479 s~K~~~L~~ll~~l~-~~~~kvlIFsq~~~~ld~l~~~L~~~-g~---~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L 553 (725)
+||-......+.... ..+.++||.+.....+......+... |. .+..++|+....++...... ..|++
T Consensus 34 ~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~-------~~ivv 106 (494)
T 1wp9_A 34 LGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWAR-------AKVIV 106 (494)
T ss_dssp SCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHH-------CSEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhccC-------CCEEE
Confidence 678766555554433 47889999999988777666666554 55 89999999998766554331 23444
Q ss_pred Eeccccc-----CCCCCCCCCEEEEeCC--CCCcchhhhHhHhhHh
Q 004880 554 LSTRAGG-----LGINLTAADTCILYDS--DWNPQMDLQAMDRCHR 592 (725)
Q Consensus 554 lst~agg-----~GiNL~~a~~VI~~D~--~wNp~~~~Qa~gR~~R 592 (725)
.+..... ..+++...+.||+=+. --+...+.+...+..+
T Consensus 107 ~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~ 152 (494)
T 1wp9_A 107 ATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKR 152 (494)
T ss_dssp ECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred ecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHh
Confidence 4443322 2456677777777222 2233344444444443
No 248
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=49.16 E-value=1.2e+02 Score=28.26 Aligned_cols=89 Identities=17% Similarity=0.187 Sum_probs=54.1
Q ss_pred hcHHHHHHHH-HHHHhh--CCCcEEEEccchhHHHHHHHHHhhc-----CceEEEEeCCCCHHHHHHHHHHHhCCCCCce
Q 004880 479 CGKFRLLDRL-LARLFA--RNHKVLVFSQWTKILDIMEYYFNEK-----GYEVCRIDGSVRLDERKRQIQDFNDVNSSYR 550 (725)
Q Consensus 479 s~K~~~L~~l-l~~l~~--~~~kvlIFsq~~~~ld~l~~~L~~~-----g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~ 550 (725)
+||-....-. +..+.. .+.++||.+.....+..+.+.+... ++.+..++|+.+...+...+.. ....
T Consensus 62 sGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~-----~~~~ 136 (220)
T 1t6n_A 62 MGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK-----NCPH 136 (220)
T ss_dssp SCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHH-----SCCS
T ss_pred CchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhc-----CCCC
Confidence 6776543333 333222 2348999999988777666655543 7899999999987665554432 1223
Q ss_pred EEEEecc-cc-----cCCCCCCCCCEEEE
Q 004880 551 IFLLSTR-AG-----GLGINLTAADTCIL 573 (725)
Q Consensus 551 v~Llst~-ag-----g~GiNL~~a~~VI~ 573 (725)
| +++|. .. ...+++...+.||+
T Consensus 137 i-~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 137 I-VVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp E-EEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred E-EEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 4 55553 11 23456777777776
No 249
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=48.68 E-value=84 Score=26.70 Aligned_cols=59 Identities=14% Similarity=0.042 Sum_probs=41.3
Q ss_pred CCcEEEEcc------chhHHHHHHHHHhhcCce-EEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEec
Q 004880 496 NHKVLVFSQ------WTKILDIMEYYFNEKGYE-VCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLST 556 (725)
Q Consensus 496 ~~kvlIFsq------~~~~ld~l~~~L~~~g~~-~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst 556 (725)
.++|+||+. +.........+|...|++ |..++=....+.+..+.+... ...+.++++.-
T Consensus 19 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~tg--~~tvP~vfI~g 84 (118)
T 2wem_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSN--WPTIPQVYLNG 84 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHHT--CCSSCEEEETT
T ss_pred cCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHhC--CCCcCeEEECC
Confidence 468999988 577889999999999995 888887666655555444332 34455555543
No 250
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=48.43 E-value=66 Score=35.12 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=26.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEc
Q 004880 177 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 212 (725)
Q Consensus 177 ~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P 212 (725)
.+++-..|.|||..+..++.++...| .++++|+.
T Consensus 104 I~ivG~~GvGKTTl~~kLA~~l~~~G--~kVllVd~ 137 (504)
T 2j37_W 104 IMFVGLQGSGKTTTCSKLAYYYQRKG--WKTCLICA 137 (504)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEec
Confidence 35566689999999999998887653 46777776
No 251
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=48.11 E-value=18 Score=34.37 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=26.4
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEc
Q 004880 178 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 212 (725)
Q Consensus 178 ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P 212 (725)
|..-..|.|||.+++.++..+...| .+++++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~G--~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAAG--YRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTT--CCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC--CCEEEEcc
Confidence 4556789999999999999988764 47777765
No 252
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=46.96 E-value=20 Score=34.55 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=29.6
Q ss_pred cCCCCeEEEcCCCCcHHHHHHHHHHHHH-hCCCCCCcEEEEcCccHHHHHH
Q 004880 172 QNGLNGILADQMGLGKTIQTIAFLAHLK-GNGLHGPYLVIAPLSTLSNWVN 221 (725)
Q Consensus 172 ~~~~~~ILademGlGKT~qaiali~~l~-~~~~~~~~LIV~P~sll~~W~~ 221 (725)
..|.-..|.-+.|+|||..+-.++.... .. .+..+++.-.....+...
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~ 76 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLEERARDLRR 76 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSSCHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEEccCCHHHHHH
Confidence 3455567888999999988766664333 22 245666666554444333
No 253
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=46.15 E-value=89 Score=25.87 Aligned_cols=46 Identities=20% Similarity=0.332 Sum_probs=41.1
Q ss_pred EEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhC
Q 004880 499 VLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFND 544 (725)
Q Consensus 499 vlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~ 544 (725)
.+|||.-...+..|...+...|..++.+.+......|.+.++.|..
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefek 50 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEK 50 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHT
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHH
Confidence 5788888888888888888889999999999999999999999986
No 254
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=46.08 E-value=41 Score=28.63 Aligned_cols=95 Identities=9% Similarity=0.106 Sum_probs=47.4
Q ss_pred CCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhC--CCCCceEEEEecccccCCC--CCCCCCE
Q 004880 495 RNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFND--VNSSYRIFLLSTRAGGLGI--NLTAADT 570 (725)
Q Consensus 495 ~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~--~~~~~~v~Llst~agg~Gi--NL~~a~~ 570 (725)
.|..+..+......++.+ ....+.++.+|-.++...-.+++..++. ....+.+++++......-+ ....+..
T Consensus 29 ~g~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~ 104 (140)
T 3grc_A 29 GGFDSDMVHSAAQALEQV----ARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAV 104 (140)
T ss_dssp TTCEEEEECSHHHHHHHH----HHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCC
T ss_pred CCCeEEEECCHHHHHHHH----HhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCC
Confidence 455555555444444333 3345667777765554444555555554 2345666666654321110 1111112
Q ss_pred EEEeCCCCCcchhhhHhHhhHhc
Q 004880 571 CILYDSDWNPQMDLQAMDRCHRI 593 (725)
Q Consensus 571 VI~~D~~wNp~~~~Qa~gR~~Ri 593 (725)
.-++--|.++....+++.++.+-
T Consensus 105 ~~~l~kP~~~~~l~~~i~~~l~~ 127 (140)
T 3grc_A 105 STWLEKPIDENLLILSLHRAIDN 127 (140)
T ss_dssp CEEECSSCCHHHHHHHHHHHHHH
T ss_pred CEEEeCCCCHHHHHHHHHHHHHh
Confidence 22334566777777777776554
No 255
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=45.98 E-value=22 Score=30.56 Aligned_cols=51 Identities=16% Similarity=0.231 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhhCC-CcEEEEcc-chhHHHHHHHHHhhcCceEEEEeCCCCH
Q 004880 481 KFRLLDRLLARLFARN-HKVLVFSQ-WTKILDIMEYYFNEKGYEVCRIDGSVRL 532 (725)
Q Consensus 481 K~~~L~~ll~~l~~~~-~kvlIFsq-~~~~ld~l~~~L~~~g~~~~~l~G~~~~ 532 (725)
++..+...+..+ ..+ .+++|||. .-.........|...|+++..++|++..
T Consensus 74 ~~~~~~~~~~~~-~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 74 KLKDIYLQAAEL-ALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp GHHHHHHHHHHH-HTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred cHHHHHHHHHHh-ccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 334444444444 345 88999994 5555567777888889999999998763
No 256
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=44.97 E-value=52 Score=27.54 Aligned_cols=76 Identities=9% Similarity=0.035 Sum_probs=47.3
Q ss_pred ceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEeccccc-----CCC-CCCCCCEEEEeCCCCCcchhhhHhHhhHhcC
Q 004880 521 YEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGG-----LGI-NLTAADTCILYDSDWNPQMDLQAMDRCHRIG 594 (725)
Q Consensus 521 ~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg-----~Gi-NL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiG 594 (725)
+..+.+|-.++...-.+.+..++...+...+++++..... ..+ ....+...-++.-|+++....+++.++...+
T Consensus 47 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 47 QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 7788888887766667777777654566777777765431 110 1122223334556888888888888887655
Q ss_pred CC
Q 004880 595 QT 596 (725)
Q Consensus 595 Q~ 596 (725)
+.
T Consensus 127 ~~ 128 (135)
T 3eqz_A 127 AE 128 (135)
T ss_dssp --
T ss_pred cc
Confidence 43
No 257
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=43.24 E-value=29 Score=35.90 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=25.7
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEc
Q 004880 173 NGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 212 (725)
Q Consensus 173 ~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P 212 (725)
.+.+.+|.-++|+|||..|-++...+ ..|++.+..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~-----~~~~~~~~~ 84 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL-----DVPFTMADA 84 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT-----TCCEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc-----CCCEEEech
Confidence 34577999999999999888777665 246655544
No 258
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=43.21 E-value=1.5e+02 Score=28.15 Aligned_cols=88 Identities=15% Similarity=0.093 Sum_probs=54.5
Q ss_pred hcHHHH-HHHHHHHHh-------hCCCcEEEEccchhHHHHHHHH----HhhcCceEEEEeCCCCHHHHHHHHHHHhCCC
Q 004880 479 CGKFRL-LDRLLARLF-------ARNHKVLVFSQWTKILDIMEYY----FNEKGYEVCRIDGSVRLDERKRQIQDFNDVN 546 (725)
Q Consensus 479 s~K~~~-L~~ll~~l~-------~~~~kvlIFsq~~~~ld~l~~~----L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~ 546 (725)
|||-.. +.-++..+. ..+.++||.+.....+..+.+. +...++.+..+.|+.+.......+..
T Consensus 77 sGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----- 151 (242)
T 3fe2_A 77 SGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----- 151 (242)
T ss_dssp SCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH-----
T ss_pred CHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC-----
Confidence 678644 444454443 2467899999988766555444 44458999999999987665554432
Q ss_pred CCceEEEEecc-cc-----cCCCCCCCCCEEEE
Q 004880 547 SSYRIFLLSTR-AG-----GLGINLTAADTCIL 573 (725)
Q Consensus 547 ~~~~v~Llst~-ag-----g~GiNL~~a~~VI~ 573 (725)
+..| +++|. .. ...+++...+.||+
T Consensus 152 -~~~I-~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 152 -GVEI-CIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp -CCSE-EEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred -CCCE-EEECHHHHHHHHHcCCCCcccccEEEE
Confidence 2334 55553 11 12356777777665
No 259
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=42.72 E-value=50 Score=41.66 Aligned_cols=88 Identities=18% Similarity=0.118 Sum_probs=59.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHHHHHHHHHHhCCCceE-EEEeCChhhHHHHHHhcCCCCCC
Q 004880 177 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSA-IIYHGSKKERDEIRRKHMPRAIG 255 (725)
Q Consensus 177 ~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~v-~~~~g~~~~r~~~~~~~~~~~~~ 255 (725)
..+.-+.|+|||..++.+++.....| +++++|.+.+.+.+-. .+++.-++.- ++..
T Consensus 1434 iei~g~~~sGkttl~~~~~a~~~~~g--~~~~~i~~e~~~~~~~--~~~~Gv~~~~l~~~~------------------- 1490 (1706)
T 3cmw_A 1434 VEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIY--ARKLGVDIDNLLCSQ------------------- 1490 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEECTTSCCCHHH--HHHTTCCGGGCEEEC-------------------
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcC--CeEEEEecCCCCCHHH--HHHcCCCHHHeEEeC-------------------
Confidence 46778899999999999998766654 6888888876554322 5555433211 1111
Q ss_pred CCCCEEEecHHHHHHHHHHhhhhcCccEEEEccccccC
Q 004880 256 PKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLK 293 (725)
Q Consensus 256 ~~~~vvItsye~~~~~~~~~l~~~~~~~vIvDEaH~ik 293 (725)
-.+++..+.-....++....++||||..-.+-
T Consensus 1491 ------p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~ 1522 (1706)
T 3cmw_A 1491 ------PDTGEQALEICDALARSGAVDVIVVDSVAALT 1522 (1706)
T ss_dssp ------CSSHHHHHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred ------CCcHHHHHHHHHHHHHcCCCCEEEEccHHhCC
Confidence 12345555555677888899999999988774
No 260
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=42.70 E-value=69 Score=26.48 Aligned_cols=57 Identities=16% Similarity=0.080 Sum_probs=40.6
Q ss_pred CCcEEEEcc------chhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEE
Q 004880 496 NHKVLVFSQ------WTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLL 554 (725)
Q Consensus 496 ~~kvlIFsq------~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Ll 554 (725)
.++|+||+. +......+..+|...|++|..++=......+..+...... ..+.++++
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~--~~vP~ifi 76 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNW--PTYPQLYV 76 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSC--CSSCEEEC
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCC--CCCCEEEE
Confidence 467999977 4456788888899999999999988776666666555532 34444444
No 261
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=42.61 E-value=21 Score=34.11 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=20.0
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q 004880 176 NGILADQMGLGKTIQTIAFLAHL 198 (725)
Q Consensus 176 ~~ILademGlGKT~qaiali~~l 198 (725)
+.++.-+.|+|||..|.+++..+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 35788999999999999988876
No 262
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=42.42 E-value=1.8e+02 Score=27.94 Aligned_cols=88 Identities=18% Similarity=0.184 Sum_probs=53.2
Q ss_pred hcHHHH-HHHHHHHHhhC--CCcEEEEccchhHHHHHHHHHh----hcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceE
Q 004880 479 CGKFRL-LDRLLARLFAR--NHKVLVFSQWTKILDIMEYYFN----EKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRI 551 (725)
Q Consensus 479 s~K~~~-L~~ll~~l~~~--~~kvlIFsq~~~~ld~l~~~L~----~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v 551 (725)
|||-.. +.-++..+... +.++||.+.....+..+.+.+. ..++.+..+.|+.+...+...+ .. +..|
T Consensus 91 sGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~---~~~I 164 (249)
T 3ber_A 91 SGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL---AK---KPHI 164 (249)
T ss_dssp SCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH---HT---CCSE
T ss_pred CCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh---cC---CCCE
Confidence 778654 34444444433 4579999998876665555444 3488999999998865544333 22 2334
Q ss_pred EEEecc-cc------cCCCCCCCCCEEEE
Q 004880 552 FLLSTR-AG------GLGINLTAADTCIL 573 (725)
Q Consensus 552 ~Llst~-ag------g~GiNL~~a~~VI~ 573 (725)
+++|. .. ..++++...+.||+
T Consensus 165 -~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 165 -IIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp -EEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred -EEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 55553 11 23567777777766
No 263
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=42.33 E-value=30 Score=29.08 Aligned_cols=28 Identities=14% Similarity=0.305 Sum_probs=15.3
Q ss_pred CCcEEEEccchhHHHHHHHHHhhcCceE
Q 004880 496 NHKVLVFSQWTKILDIMEYYFNEKGYEV 523 (725)
Q Consensus 496 ~~kvlIFsq~~~~ld~l~~~L~~~g~~~ 523 (725)
+.+|||..........+...|...|+.+
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v 33 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQV 33 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEE
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEE
Confidence 3455565555555556666665555543
No 264
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=42.14 E-value=26 Score=34.17 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=19.9
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 004880 174 GLNGILADQMGLGKTIQTIAFLAHL 198 (725)
Q Consensus 174 ~~~~ILademGlGKT~qaiali~~l 198 (725)
..+.+|.-++|+|||..+-+++..+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4467899999999998887776654
No 265
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=41.46 E-value=70 Score=27.97 Aligned_cols=57 Identities=11% Similarity=0.032 Sum_probs=40.7
Q ss_pred CcEEEEcc------chhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEe
Q 004880 497 HKVLVFSQ------WTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLS 555 (725)
Q Consensus 497 ~kvlIFsq------~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Lls 555 (725)
.+|+||+. +......+..+|...|++|..++=....+.+..+...... ..+.++++.
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~--~tvP~VfI~ 97 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANW--PTFPQLWVD 97 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTC--CSSCEEEET
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCC--CCcCEEEEC
Confidence 47889976 6778889999999999999999877666666665554433 445444443
No 266
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=41.00 E-value=17 Score=30.37 Aligned_cols=38 Identities=13% Similarity=0.317 Sum_probs=32.2
Q ss_pred hCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCC
Q 004880 494 ARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVR 531 (725)
Q Consensus 494 ~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~ 531 (725)
..+..++|||..-.........|...|+++..++|++.
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 45778999998877777888889999999999999865
No 267
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=40.16 E-value=14 Score=35.68 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=23.8
Q ss_pred EcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEE
Q 004880 180 ADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 211 (725)
Q Consensus 180 ademGlGKT~qaiali~~l~~~~~~~~~LIV~ 211 (725)
.---|.|||..++.++..+...| .++|+|=
T Consensus 6 s~kGGvGKTt~a~~LA~~la~~g--~~VlliD 35 (254)
T 3kjh_A 6 AGKGGVGKTTVAAGLIKIMASDY--DKIYAVD 35 (254)
T ss_dssp ECSSSHHHHHHHHHHHHHHTTTC--SCEEEEE
T ss_pred ecCCCCCHHHHHHHHHHHHHHCC--CeEEEEe
Confidence 44679999999999998888765 5777764
No 268
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=40.07 E-value=1.2e+02 Score=25.79 Aligned_cols=64 Identities=16% Similarity=0.222 Sum_probs=39.5
Q ss_pred CCcEEEEcc------chhHHHHHHHHHhhcCc-eEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEeccccc
Q 004880 496 NHKVLVFSQ------WTKILDIMEYYFNEKGY-EVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGG 560 (725)
Q Consensus 496 ~~kvlIFsq------~~~~ld~l~~~L~~~g~-~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg 560 (725)
.++|+||+. +..........|...|+ +|..++=....+-|+.+ ..+.....=.+||+-..-.||
T Consensus 19 ~~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~l-~~~sg~~TvPqIFI~g~~IGG 89 (118)
T 2wul_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGI-KDYSNWPTIPQVYLNGEFVGG 89 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHHH-HHHHTCCSSCEEEETTEEEEC
T ss_pred cCCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHHH-HHhccCCCCCeEeECCEEECC
Confidence 378999965 35566777778888887 57878776666555554 445432333445544433443
No 269
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=39.98 E-value=1.1e+02 Score=28.80 Aligned_cols=87 Identities=17% Similarity=0.147 Sum_probs=54.2
Q ss_pred hcHHHH-HHHHHHHHhh--CCCcEEEEccchhHHHHHHHHHhhc-----CceEEEEeCCCCHHHHHHHHHHHhCCCCCce
Q 004880 479 CGKFRL-LDRLLARLFA--RNHKVLVFSQWTKILDIMEYYFNEK-----GYEVCRIDGSVRLDERKRQIQDFNDVNSSYR 550 (725)
Q Consensus 479 s~K~~~-L~~ll~~l~~--~~~kvlIFsq~~~~ld~l~~~L~~~-----g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~ 550 (725)
+||-.. +.-++..+.. .+.++||.+.....+..+.+.+... ++++..+.|+.+...+...+ + +..
T Consensus 72 sGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~----~~~ 144 (230)
T 2oxc_A 72 TGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL---K----KCH 144 (230)
T ss_dssp SSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT---T----SCS
T ss_pred CcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc---c----CCC
Confidence 788755 4455555432 3578999999988777666665543 78899999999876554433 2 233
Q ss_pred EEEEeccc-c-----cCCCCCCCCCEEEE
Q 004880 551 IFLLSTRA-G-----GLGINLTAADTCIL 573 (725)
Q Consensus 551 v~Llst~a-g-----g~GiNL~~a~~VI~ 573 (725)
| +++|.. . ...+++...+.||+
T Consensus 145 I-iv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 145 I-AVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp E-EEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred E-EEECHHHHHHHHhcCCcccccCCEEEe
Confidence 4 555542 1 22455666666655
No 270
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=39.95 E-value=63 Score=35.64 Aligned_cols=25 Identities=32% Similarity=0.268 Sum_probs=20.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 004880 174 GLNGILADQMGLGKTIQTIAFLAHL 198 (725)
Q Consensus 174 ~~~~ILademGlGKT~qaiali~~l 198 (725)
+...+|.-+.|+|||..+-++...+
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5567899999999998877766655
No 271
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=39.82 E-value=39 Score=28.82 Aligned_cols=93 Identities=9% Similarity=0.070 Sum_probs=40.1
Q ss_pred CCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccC----CCCCCCCCE
Q 004880 495 RNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGL----GINLTAADT 570 (725)
Q Consensus 495 ~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~----GiNL~~a~~ 570 (725)
.|..|..++.....++.+ ....+.++.+|- ++...-.+.+...+...+.+.+++++...... .+. .+|+.
T Consensus 27 ~g~~v~~~~~~~~a~~~l----~~~~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~-~g~~~ 100 (142)
T 2qxy_A 27 DGFNVIWAKNEQEAFTFL----RREKIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAVLSAYVDKDLIINSVK-AGAVD 100 (142)
T ss_dssp GTCEEEEESSHHHHHHHH----TTSCCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHH-HTCSC
T ss_pred CCCEEEEECCHHHHHHHH----hccCCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH-CCcce
Confidence 345555444433333322 233456666666 55444444455444323345555555432110 000 01222
Q ss_pred EEEeCCCCCcchhhhHhHhhHhcCC
Q 004880 571 CILYDSDWNPQMDLQAMDRCHRIGQ 595 (725)
Q Consensus 571 VI~~D~~wNp~~~~Qa~gR~~RiGQ 595 (725)
+ +.-|.++....+++.++.+-.+
T Consensus 101 ~--l~kP~~~~~l~~~i~~~~~~~~ 123 (142)
T 2qxy_A 101 Y--ILKPFRLDYLLERVKKIISSTP 123 (142)
T ss_dssp E--EESSCCHHHHHHHHHHHHHC--
T ss_pred e--EeCCCCHHHHHHHHHHHHhhcc
Confidence 2 2235566666666666655443
No 272
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=38.74 E-value=64 Score=38.85 Aligned_cols=90 Identities=13% Similarity=0.134 Sum_probs=61.3
Q ss_pred hcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHh----hcCc----eEEEEeCCCCHHHHHHHHHHHhCCCCCce
Q 004880 479 CGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFN----EKGY----EVCRIDGSVRLDERKRQIQDFNDVNSSYR 550 (725)
Q Consensus 479 s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~----~~g~----~~~~l~G~~~~~~R~~~i~~F~~~~~~~~ 550 (725)
|||-.+..-++..+...+.++||.++....+..+.+.+. ..|+ .+..++|+++...+.+..+.+.. ..
T Consensus 82 SGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~----~~ 157 (1054)
T 1gku_B 82 VGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN----FK 157 (1054)
T ss_dssp SCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG----CS
T ss_pred CCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC----CC
Confidence 788876666777777788899999999887665555544 3467 89999999998888777777764 34
Q ss_pred EEEEecc-cccCCCC-CCCCCEEEE
Q 004880 551 IFLLSTR-AGGLGIN-LTAADTCIL 573 (725)
Q Consensus 551 v~Llst~-agg~GiN-L~~a~~VI~ 573 (725)
| +++|. ..-.-+. |...+.||+
T Consensus 158 I-lV~TP~~L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 158 I-VITTTQFLSKHYRELGHFDFIFV 181 (1054)
T ss_dssp E-EEEEHHHHHHCSTTSCCCSEEEE
T ss_pred E-EEEcHHHHHHHHHHhccCCEEEE
Confidence 5 55553 2222222 455666665
No 273
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=38.27 E-value=96 Score=25.67 Aligned_cols=93 Identities=11% Similarity=0.106 Sum_probs=49.2
Q ss_pred CCCcEEEEccchhHHHHHHHHHhhc-CceEEEEeCCCCH-HHHHHHHHHHhCCCCCceEEEEeccccc----CCCCCCCC
Q 004880 495 RNHKVLVFSQWTKILDIMEYYFNEK-GYEVCRIDGSVRL-DERKRQIQDFNDVNSSYRIFLLSTRAGG----LGINLTAA 568 (725)
Q Consensus 495 ~~~kvlIFsq~~~~ld~l~~~L~~~-g~~~~~l~G~~~~-~~R~~~i~~F~~~~~~~~v~Llst~agg----~GiNL~~a 568 (725)
.|..+..++.....++.+. .. .+.++.++-.++. ..-.+.+...+...+.+.+++++..... .++..
T Consensus 28 ~g~~v~~~~~~~~a~~~l~----~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~--- 100 (132)
T 2rdm_A 28 AGFLVTAVSSGAKAIEMLK----SGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISGHAALEWASNGVPD--- 100 (132)
T ss_dssp TTCEEEEESSHHHHHHHHH----TTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESSCCTTHHHHSCTT---
T ss_pred cCCEEEEECCHHHHHHHHH----cCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCCccHHHHHhhcCC---
Confidence 4666665555444444332 33 5677777765542 2233444444432345666666654322 12221
Q ss_pred CEEEEeCCCCCcchhhhHhHhhHhcCCC
Q 004880 569 DTCILYDSDWNPQMDLQAMDRCHRIGQT 596 (725)
Q Consensus 569 ~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~ 596 (725)
. -++.-|.++....+++.++.+.+..
T Consensus 101 ~--~~l~kP~~~~~l~~~i~~~~~~~~~ 126 (132)
T 2rdm_A 101 S--IILEKPFTSAQLITAVSQLLNAREG 126 (132)
T ss_dssp C--EEEESSCCHHHHHHHHHHHHHTTC-
T ss_pred c--ceEeCCCCHHHHHHHHHHHHhcCCC
Confidence 2 1344577888888888888776543
No 274
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=38.14 E-value=1e+02 Score=26.26 Aligned_cols=95 Identities=13% Similarity=0.115 Sum_probs=46.5
Q ss_pred CcEEEEccchhHHHHHHHHHhh-cCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccCCC-CCCCCCEEEEe
Q 004880 497 HKVLVFSQWTKILDIMEYYFNE-KGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGI-NLTAADTCILY 574 (725)
Q Consensus 497 ~kvlIFsq~~~~ld~l~~~L~~-~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~Gi-NL~~a~~VI~~ 574 (725)
..+..++.....+..+ +.. ..+.++.+|-.++...-.+++..++...+.+.|++++...-...+ ....+...-++
T Consensus 46 ~~v~~~~~~~~~~~~~---~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l 122 (146)
T 4dad_A 46 YRVTRTVGRAAQIVQR---TDGLDAFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRAGVRDVL 122 (146)
T ss_dssp CEEEEECCCHHHHTTC---HHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHTTTEEEEE
T ss_pred eEEEEeCCHHHHHHHH---HhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHhCCceeE
Confidence 5555555443333222 222 446667777666655555555555543445566666653221110 11111122233
Q ss_pred CCCCCcchhhhHhHhhHhcC
Q 004880 575 DSDWNPQMDLQAMDRCHRIG 594 (725)
Q Consensus 575 D~~wNp~~~~Qa~gR~~RiG 594 (725)
.-|+++.....++.++.+-.
T Consensus 123 ~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 123 RWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp ESSCCHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHHhhh
Confidence 34667777777777766544
No 275
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=38.05 E-value=2e+02 Score=27.85 Aligned_cols=88 Identities=13% Similarity=0.103 Sum_probs=54.1
Q ss_pred hcHHHH-HHHHHHHHhh------CCCcEEEEccchhHHHHHHHHHh----hcCceEEEEeCCCCHHHHHHHHHHHhCCCC
Q 004880 479 CGKFRL-LDRLLARLFA------RNHKVLVFSQWTKILDIMEYYFN----EKGYEVCRIDGSVRLDERKRQIQDFNDVNS 547 (725)
Q Consensus 479 s~K~~~-L~~ll~~l~~------~~~kvlIFsq~~~~ld~l~~~L~----~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~ 547 (725)
|||-.. +.-++..+.. .+.++||.+.....+..+...+. ..+..+..+.|+.........+ ..
T Consensus 102 sGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~--- 175 (262)
T 3ly5_A 102 SGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GN--- 175 (262)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HH---
T ss_pred CCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cC---
Confidence 677654 4444444433 57789999998876665555444 4578889999988865544333 22
Q ss_pred CceEEEEecc-------cccCCCCCCCCCEEEE
Q 004880 548 SYRIFLLSTR-------AGGLGINLTAADTCIL 573 (725)
Q Consensus 548 ~~~v~Llst~-------agg~GiNL~~a~~VI~ 573 (725)
+..| +++|. ..+.++++...+.||+
T Consensus 176 ~~~I-iv~Tp~~l~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 176 GINI-IVATPGRLLDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp CCSE-EEECHHHHHHHHHHCTTCCCTTCCEEEE
T ss_pred CCCE-EEEcHHHHHHHHHccCCcccccCCEEEE
Confidence 2334 66662 1223567777777765
No 276
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=37.74 E-value=35 Score=39.80 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=18.9
Q ss_pred cCCCCeEEEcCCCCcHHHHHHHHHH
Q 004880 172 QNGLNGILADQMGLGKTIQTIAFLA 196 (725)
Q Consensus 172 ~~~~~~ILademGlGKT~qaiali~ 196 (725)
..+.+.+|.-+.|+|||..+-+++.
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHH
Confidence 3455678999999999977666544
No 277
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=37.28 E-value=1.8e+02 Score=29.57 Aligned_cols=90 Identities=16% Similarity=0.158 Sum_probs=55.1
Q ss_pred hcHHHHH-HHHHHHHhh--CCCcEEEEccchhHHHHHHHHHhhc-----CceEEEEeCCCCHHHHHHHHHHHhCCCCCce
Q 004880 479 CGKFRLL-DRLLARLFA--RNHKVLVFSQWTKILDIMEYYFNEK-----GYEVCRIDGSVRLDERKRQIQDFNDVNSSYR 550 (725)
Q Consensus 479 s~K~~~L-~~ll~~l~~--~~~kvlIFsq~~~~ld~l~~~L~~~-----g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~ 550 (725)
+||-... .-++..+.. .+.++||.+.....+..+...+... ++.+..++|+.+.......+.. ....
T Consensus 56 sGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~ 130 (391)
T 1xti_A 56 MGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK-----NCPH 130 (391)
T ss_dssp SSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHH-----SCCS
T ss_pred CcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhc-----CCCC
Confidence 6777543 333333322 3568999999988777666655543 7899999999987666555432 1233
Q ss_pred EEEEecccc-----cCCCCCCCCCEEEE
Q 004880 551 IFLLSTRAG-----GLGINLTAADTCIL 573 (725)
Q Consensus 551 v~Llst~ag-----g~GiNL~~a~~VI~ 573 (725)
|++.+.... ...+++...+.||+
T Consensus 131 iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 131 IVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp EEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred EEEECHHHHHHHHHcCCccccccCEEEE
Confidence 444443322 23456777777776
No 278
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=37.12 E-value=1.7e+02 Score=27.55 Aligned_cols=87 Identities=21% Similarity=0.221 Sum_probs=49.4
Q ss_pred hcHHHH-HHHHHHHHh------hCCCcEEEEccchhHHHHHHHHHhh----cCceEEEEeCCCCHHHHHHHHHHHhCCCC
Q 004880 479 CGKFRL-LDRLLARLF------ARNHKVLVFSQWTKILDIMEYYFNE----KGYEVCRIDGSVRLDERKRQIQDFNDVNS 547 (725)
Q Consensus 479 s~K~~~-L~~ll~~l~------~~~~kvlIFsq~~~~ld~l~~~L~~----~g~~~~~l~G~~~~~~R~~~i~~F~~~~~ 547 (725)
+||-.. +.-++..+. ..+.++||.+.....+..+.+.+.. .++.+..+.|+.+.......+ +
T Consensus 73 sGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~---- 145 (236)
T 2pl3_A 73 SGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI---N---- 145 (236)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH---T----
T ss_pred CcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC---C----
Confidence 677654 333333332 3467899999988876666655554 358899999987754443332 2
Q ss_pred CceEEEEecc-cc------cCCCCCCCCCEEEE
Q 004880 548 SYRIFLLSTR-AG------GLGINLTAADTCIL 573 (725)
Q Consensus 548 ~~~v~Llst~-ag------g~GiNL~~a~~VI~ 573 (725)
+..| +++|. .. +..+++...+.||+
T Consensus 146 ~~~i-iv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 146 NINI-LVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp TCSE-EEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred CCCE-EEECHHHHHHHHHhcCCcccccccEEEE
Confidence 2334 55553 22 12356666666665
No 279
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=37.12 E-value=87 Score=34.90 Aligned_cols=76 Identities=14% Similarity=0.166 Sum_probs=56.1
Q ss_pred hcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecc
Q 004880 479 CGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTR 557 (725)
Q Consensus 479 s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~ 557 (725)
+||-.. -++..+. .+.++||.++....+....+.|...|+++..++|+.+..++......+....+...+++++..
T Consensus 70 sGKTl~--~~lpal~-~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe 145 (591)
T 2v1x_A 70 GGKSLC--YQLPALC-SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPE 145 (591)
T ss_dssp SCTTHH--HHHHHHT-SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHH
T ss_pred ChHHHH--HHHHHHH-cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChh
Confidence 566532 2333333 356899999999988888888888899999999999999998888888543456667666654
No 280
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=36.76 E-value=13 Score=35.21 Aligned_cols=36 Identities=11% Similarity=0.358 Sum_probs=0.0
Q ss_pred EEEEcccccc---CCcchHHHHHHhcCCCCc----EEEEeccC
Q 004880 283 YLVVDEGHRL---KNPKCKLLKELKYIPIGN----KLLLTGTP 318 (725)
Q Consensus 283 ~vIvDEaH~i---kn~~s~~~~~l~~l~~~~----rllLTgTP 318 (725)
+|||||||.+ ++......+.+..+...+ -++|+|.|
T Consensus 90 vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 90 IVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp EEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred EEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
No 281
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=36.53 E-value=34 Score=32.25 Aligned_cols=42 Identities=26% Similarity=0.413 Sum_probs=30.9
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEE--cCccHHHHHHH
Q 004880 178 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA--PLSTLSNWVNE 222 (725)
Q Consensus 178 ILademGlGKT~qaiali~~l~~~~~~~~~LIV~--P~sll~~W~~E 222 (725)
+..---|.|||..++.++..+...| ++|+|- |...+..|...
T Consensus 5 v~s~KGGvGKTT~a~~LA~~la~~g---~VlliD~D~q~~~~~~~~~ 48 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAYLALQG---ETLLIDGDPNRSATGWGKR 48 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHTTS---CEEEEEECTTCHHHHHHHH
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhcC---CEEEEECCCCCCHHHHhcC
Confidence 4456679999999999998888764 677754 55566667643
No 282
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=36.04 E-value=32 Score=32.84 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=26.2
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEc
Q 004880 178 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 212 (725)
Q Consensus 178 ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P 212 (725)
+..-.-|.|||..++.++..+...| .++|+|-.
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g--~~VlliD~ 39 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGDRG--RKVLAVDG 39 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTT--CCEEEEEC
T ss_pred EecCCCCCCHHHHHHHHHHHHHhcC--CeEEEEeC
Confidence 4456779999999999999888764 57888765
No 283
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=35.82 E-value=35 Score=29.04 Aligned_cols=72 Identities=4% Similarity=0.012 Sum_probs=34.0
Q ss_pred CceEEEEeCCCCH--HHHHHHHHHHhCCCCCceEEEEeccccc----CCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhc
Q 004880 520 GYEVCRIDGSVRL--DERKRQIQDFNDVNSSYRIFLLSTRAGG----LGINLTAADTCILYDSDWNPQMDLQAMDRCHRI 593 (725)
Q Consensus 520 g~~~~~l~G~~~~--~~R~~~i~~F~~~~~~~~v~Llst~agg----~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~Ri 593 (725)
.+.++.+|-.++. ..-.+++..++...+.+.+++++...-. ..+. .+|+.+ +--|+++....+++.++.+-
T Consensus 50 ~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~-~ga~~~--l~KP~~~~~l~~~i~~~~~~ 126 (136)
T 3kto_A 50 DAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPTIVMASSSDIPTAVRAMR-ASAADF--IEKPFIEHVLVHDVQQIING 126 (136)
T ss_dssp TEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCEEEEESSCCHHHHHHHHH-TTCSEE--EESSBCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHH-cChHHh--eeCCCCHHHHHHHHHHHHhc
Confidence 3455556655554 4445555555543345555555543211 0111 112222 22456666666666666554
Q ss_pred C
Q 004880 594 G 594 (725)
Q Consensus 594 G 594 (725)
+
T Consensus 127 ~ 127 (136)
T 3kto_A 127 A 127 (136)
T ss_dssp H
T ss_pred c
Confidence 3
No 284
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=35.58 E-value=1.6e+02 Score=26.90 Aligned_cols=88 Identities=15% Similarity=0.176 Sum_probs=54.7
Q ss_pred hcHHHH-HHHHHHHHh-----hCCCcEEEEccchhHHHHHHHHHhhc--CceEEEEeCCCCHHHHHHHHHHHhCCCCCce
Q 004880 479 CGKFRL-LDRLLARLF-----ARNHKVLVFSQWTKILDIMEYYFNEK--GYEVCRIDGSVRLDERKRQIQDFNDVNSSYR 550 (725)
Q Consensus 479 s~K~~~-L~~ll~~l~-----~~~~kvlIFsq~~~~ld~l~~~L~~~--g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~ 550 (725)
+||-.. +.-++..+. ..+.++||.+.....+..+.+.+... ++++..+.|+.+.......+.. +..
T Consensus 49 sGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 122 (207)
T 2gxq_A 49 TGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLR------GAD 122 (207)
T ss_dssp SCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHH------CCS
T ss_pred ChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhC------CCC
Confidence 778765 444444443 34678999999988877777777654 4788889998876544433321 233
Q ss_pred EEEEecc-cc-----cCCCCCCCCCEEEE
Q 004880 551 IFLLSTR-AG-----GLGINLTAADTCIL 573 (725)
Q Consensus 551 v~Llst~-ag-----g~GiNL~~a~~VI~ 573 (725)
| +++|. .. ...+++...+.||+
T Consensus 123 i-~v~T~~~l~~~~~~~~~~~~~~~~iVi 150 (207)
T 2gxq_A 123 A-VVATPGRALDYLRQGVLDLSRVEVAVL 150 (207)
T ss_dssp E-EEECHHHHHHHHHHTSSCCTTCSEEEE
T ss_pred E-EEECHHHHHHHHHcCCcchhhceEEEE
Confidence 4 55553 11 12456677777766
No 285
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=35.45 E-value=25 Score=34.42 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=22.5
Q ss_pred EcCCCCcHHHHHHHHHHHHHhCCCCCCcEEE
Q 004880 180 ADQMGLGKTIQTIAFLAHLKGNGLHGPYLVI 210 (725)
Q Consensus 180 ademGlGKT~qaiali~~l~~~~~~~~~LIV 210 (725)
+---|.|||..++.++..+...| .++|+|
T Consensus 7 s~KGGvGKTT~a~nLA~~la~~G--~~Vlli 35 (269)
T 1cp2_A 7 YGKGGIGKSTTTQNLTSGLHAMG--KTIMVV 35 (269)
T ss_dssp EECTTSSHHHHHHHHHHHHHTTT--CCEEEE
T ss_pred ecCCCCcHHHHHHHHHHHHHHCC--CcEEEE
Confidence 34669999999999998887653 467765
No 286
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=35.23 E-value=33 Score=28.37 Aligned_cols=39 Identities=13% Similarity=0.342 Sum_probs=31.5
Q ss_pred hhCCCcEEEEccchhHHHHHHHHHhhcCce-EEEEeCCCC
Q 004880 493 FARNHKVLVFSQWTKILDIMEYYFNEKGYE-VCRIDGSVR 531 (725)
Q Consensus 493 ~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~-~~~l~G~~~ 531 (725)
...+..++|||..-.........|...|+. +..++|++.
T Consensus 49 l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 49 LEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp SCTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 356788999999877777788888899995 888899765
No 287
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=35.12 E-value=55 Score=34.21 Aligned_cols=45 Identities=18% Similarity=0.229 Sum_probs=33.1
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCccHHHH
Q 004880 173 NGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNW 219 (725)
Q Consensus 173 ~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sll~~W 219 (725)
.+.+.++.-.+|+|||..+-.++..+...+ ++++|+=|..-...+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~ 78 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQG--SRVIIIDPEREYKEM 78 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEEESSCCSHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCC--CEEEEEeCCcCHHHH
Confidence 466889999999999988877777666543 577888786544433
No 288
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=35.07 E-value=92 Score=26.85 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=21.1
Q ss_pred CCcEEEEccchhHHHHHHHHHhhcCceEE
Q 004880 496 NHKVLVFSQWTKILDIMEYYFNEKGYEVC 524 (725)
Q Consensus 496 ~~kvlIFsq~~~~ld~l~~~L~~~g~~~~ 524 (725)
+.+|||..........+...|...|+.+.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~ 35 (154)
T 2rjn_A 7 NYTVMLVDDEQPILNSLKRLIKRLGCNII 35 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHcCCeEE
Confidence 45677777777777777777777776654
No 289
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=34.58 E-value=23 Score=34.71 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=23.8
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEE
Q 004880 178 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 211 (725)
Q Consensus 178 ILademGlGKT~qaiali~~l~~~~~~~~~LIV~ 211 (725)
+..---|.|||..++.++..+. .| .++|+|=
T Consensus 32 v~s~kGGvGKTT~a~~LA~~la-~g--~~VlliD 62 (267)
T 3k9g_A 32 IASIKGGVGKSTSAIILATLLS-KN--NKVLLID 62 (267)
T ss_dssp ECCSSSSSCHHHHHHHHHHHHT-TT--SCEEEEE
T ss_pred EEeCCCCchHHHHHHHHHHHHH-CC--CCEEEEE
Confidence 3446789999999999988887 54 5777764
No 290
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=34.15 E-value=22 Score=38.85 Aligned_cols=34 Identities=12% Similarity=0.103 Sum_probs=23.9
Q ss_pred HHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHH
Q 004880 165 KWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL 198 (725)
Q Consensus 165 ~~l~~~~~~~~~~ILademGlGKT~qaiali~~l 198 (725)
..+......+.+.+|..++|+|||..|-++...+
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHH
Confidence 3333333457889999999999998776655543
No 291
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=34.07 E-value=40 Score=32.80 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=26.4
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEc
Q 004880 178 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 212 (725)
Q Consensus 178 ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P 212 (725)
+..-.-|.|||..++.++..+...| .++|+|-.
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g--~~VlliD~ 39 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQLG--HDVTIVDA 39 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHTT--CCEEEEEC
T ss_pred EECCCCCCCHHHHHHHHHHHHHhCC--CcEEEEEC
Confidence 4566789999999999998888764 57888763
No 292
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=33.81 E-value=62 Score=32.14 Aligned_cols=38 Identities=21% Similarity=0.114 Sum_probs=26.2
Q ss_pred cCCCCcHHHHHHHHHHHHHhCCCCCCcEEEE--cCccHHHHH
Q 004880 181 DQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA--PLSTLSNWV 220 (725)
Q Consensus 181 demGlGKT~qaiali~~l~~~~~~~~~LIV~--P~sll~~W~ 220 (725)
---|.|||..++.++..+...| .++|+|- |..-...|.
T Consensus 44 ~KGGvGKTT~a~nLA~~la~~G--~rVlliD~D~q~~~~~~l 83 (298)
T 2oze_A 44 FKGGVGKSKLSTMFAYLTDKLN--LKVLMIDKDLQATLTKDL 83 (298)
T ss_dssp SSSSSSHHHHHHHHHHHHHHTT--CCEEEEEECTTCHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHhCC--CeEEEEeCCCCCCHHHHH
Confidence 3789999999999988887654 4677753 333334443
No 293
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=33.45 E-value=2e+02 Score=23.96 Aligned_cols=91 Identities=8% Similarity=-0.009 Sum_probs=52.2
Q ss_pred CCCcEEEEccchhHHHHHHHHHhh-cCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEe-cccccCCCCCCCCCEEE
Q 004880 495 RNHKVLVFSQWTKILDIMEYYFNE-KGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLS-TRAGGLGINLTAADTCI 572 (725)
Q Consensus 495 ~~~kvlIFsq~~~~ld~l~~~L~~-~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Lls-t~agg~GiNL~~a~~VI 572 (725)
.|..+..+......+. .+.. ..+..+.++-.++...-.+++...+.....+.+++++ ... .... .... ..-
T Consensus 38 ~g~~v~~~~~~~~al~----~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~-~~~~-~~~~-~~~ 110 (138)
T 2b4a_A 38 LGAEVTVHPSGSAFFQ----HRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILTTGRH-ELIE-SSEH-NLS 110 (138)
T ss_dssp TTCEEEEESSHHHHHH----TGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEESCC---CCC-CSSS-CEE
T ss_pred cCCEEEEeCCHHHHHH----HHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCC-CHHH-HHHH-HHh
Confidence 3666655554443333 3344 5678888887776544456677776544567777777 432 2222 2222 222
Q ss_pred EeCCCCCcchhhhHhHhhHh
Q 004880 573 LYDSDWNPQMDLQAMDRCHR 592 (725)
Q Consensus 573 ~~D~~wNp~~~~Qa~gR~~R 592 (725)
++--|.++....+++.++.+
T Consensus 111 ~l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 111 YLQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp EEESSCCHHHHHHHHHHTCC
T ss_pred eeeCCCCHHHHHHHHHHHHH
Confidence 34457888888888877754
No 294
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=33.38 E-value=37 Score=32.90 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=25.6
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEc
Q 004880 178 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 212 (725)
Q Consensus 178 ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P 212 (725)
+..---|.|||..++.++..+...| .++|+|--
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g--~~VlliD~ 39 (260)
T 3q9l_A 7 VTSGKGGVGKTTSSAAIATGLAQKG--KKTVVIDF 39 (260)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTT--CCEEEEEC
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCC--CcEEEEEC
Confidence 4456679999999999999888764 47777654
No 295
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=32.53 E-value=30 Score=34.81 Aligned_cols=31 Identities=23% Similarity=0.258 Sum_probs=24.1
Q ss_pred EEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEE
Q 004880 179 LADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 211 (725)
Q Consensus 179 LademGlGKT~qaiali~~l~~~~~~~~~LIV~ 211 (725)
++---|.|||..++.++..+...| .++|+|=
T Consensus 46 v~~KGGvGKTT~a~nLA~~La~~G--~~VlliD 76 (307)
T 3end_A 46 VYGKGGIGKSTTSSNLSAAFSILG--KRVLQIG 76 (307)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred EECCCCccHHHHHHHHHHHHHHCC--CeEEEEe
Confidence 336789999999999999888764 4666663
No 296
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=32.43 E-value=1.2e+02 Score=28.33 Aligned_cols=72 Identities=15% Similarity=0.184 Sum_probs=43.1
Q ss_pred CCCcEEEEccchhHHHHHHHHHhh---cCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecc-c-----ccCCCCC
Q 004880 495 RNHKVLVFSQWTKILDIMEYYFNE---KGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTR-A-----GGLGINL 565 (725)
Q Consensus 495 ~~~kvlIFsq~~~~ld~l~~~L~~---~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~-a-----gg~GiNL 565 (725)
.+.++||.+.....+..+.+.+.. .++.+..+.|+.+...+... +.. +..| +++|. . ....+++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~i-iv~Tp~~l~~~~~~~~~~~ 165 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---ISK---GVDI-IIATPGRLNDLQMNNSVNL 165 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HHS---CCSE-EEECHHHHHHHHHTTCCCC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hcC---CCCE-EEECHHHHHHHHHcCCcCc
Confidence 678899999999888777777765 37888899988775444333 332 2344 55553 1 1234566
Q ss_pred CCCCEEEE
Q 004880 566 TAADTCIL 573 (725)
Q Consensus 566 ~~a~~VI~ 573 (725)
...+.||+
T Consensus 166 ~~~~~lVi 173 (228)
T 3iuy_A 166 RSITYLVI 173 (228)
T ss_dssp TTCCEEEE
T ss_pred ccceEEEE
Confidence 77776665
No 297
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=32.23 E-value=31 Score=34.36 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=22.7
Q ss_pred EcCCCCcHHHHHHHHHHHHHhCCCCCCcEEE
Q 004880 180 ADQMGLGKTIQTIAFLAHLKGNGLHGPYLVI 210 (725)
Q Consensus 180 ademGlGKT~qaiali~~l~~~~~~~~~LIV 210 (725)
+---|.|||..++.++..+...| .++|+|
T Consensus 8 s~KGGvGKTT~a~nLA~~La~~G--~rVlli 36 (289)
T 2afh_E 8 YGKGGIGKSTTTQNLVAALAEMG--KKVMIV 36 (289)
T ss_dssp EECTTSSHHHHHHHHHHHHHHTT--CCEEEE
T ss_pred eCCCcCcHHHHHHHHHHHHHHCC--CeEEEE
Confidence 34679999999999998888764 466665
No 298
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=32.19 E-value=31 Score=35.18 Aligned_cols=30 Identities=23% Similarity=0.246 Sum_probs=23.3
Q ss_pred EcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEE
Q 004880 180 ADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 211 (725)
Q Consensus 180 ademGlGKT~qaiali~~l~~~~~~~~~LIV~ 211 (725)
+--=|.|||.+++-+...|...| .++|+|=
T Consensus 54 aGKGGVGKTTtavNLA~aLA~~G--kkVllID 83 (314)
T 3fwy_A 54 YGKGGIGKSTTSSNLSAAFSILG--KRVLQIG 83 (314)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred ECCCccCHHHHHHHHHHHHHHCC--CeEEEEe
Confidence 34568999999999999888875 4676664
No 299
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=31.74 E-value=1e+02 Score=24.77 Aligned_cols=57 Identities=7% Similarity=0.012 Sum_probs=40.2
Q ss_pred CcEEEEcc-chhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEE
Q 004880 497 HKVLVFSQ-WTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLL 554 (725)
Q Consensus 497 ~kvlIFsq-~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Ll 554 (725)
.+|.||+. +.........+|..+|++|..++=+...+.++.+.+. +.+...+.++++
T Consensus 4 a~I~vYs~~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~-~~G~~tVP~I~i 61 (92)
T 2lqo_A 4 AALTIYTTSWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSV-NGGNRTVPTVKF 61 (92)
T ss_dssp SCEEEEECTTCSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHH-SSSSSCSCEEEE
T ss_pred CcEEEEcCCCCHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHH-cCCCCEeCEEEE
Confidence 35888864 3456777888999999999999988887777666554 333445555554
No 300
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=31.59 E-value=35 Score=33.31 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=20.5
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 004880 174 GLNGILADQMGLGKTIQTIAFLAHL 198 (725)
Q Consensus 174 ~~~~ILademGlGKT~qaiali~~l 198 (725)
..+.+|.-+.|+|||..+-+++..+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 4567899999999999988877654
No 301
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=31.51 E-value=37 Score=36.16 Aligned_cols=40 Identities=13% Similarity=0.144 Sum_probs=30.5
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCcc
Q 004880 174 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLST 215 (725)
Q Consensus 174 ~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~sl 215 (725)
..+.++.-.+|+|||...-.++..+...+ .+++|+=|+.-
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g--~~viv~Dpkge 92 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRG--DRMVIVDPNGD 92 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTT--CEEEEEEETTH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEeCCCc
Confidence 46788889999999998666677766653 47788888763
No 302
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=31.16 E-value=37 Score=27.61 Aligned_cols=38 Identities=11% Similarity=0.246 Sum_probs=31.5
Q ss_pred hCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCC
Q 004880 494 ARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVR 531 (725)
Q Consensus 494 ~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~ 531 (725)
..+.+++|||..-.........|...|+++..++|++.
T Consensus 54 ~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 54 NDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 35678999998877777888888899999999999754
No 303
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=30.66 E-value=43 Score=32.76 Aligned_cols=33 Identities=18% Similarity=0.352 Sum_probs=25.9
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEc
Q 004880 178 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 212 (725)
Q Consensus 178 ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P 212 (725)
+..-.-|.|||..++.++..+...| .++|+|=.
T Consensus 23 v~s~kGGvGKTT~a~nLA~~la~~G--~~VlliD~ 55 (262)
T 2ph1_A 23 VMSGKGGVGKSTVTALLAVHYARQG--KKVGILDA 55 (262)
T ss_dssp EECSSSCTTHHHHHHHHHHHHHHTT--CCEEEEEC
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHCC--CeEEEEeC
Confidence 4456779999999999998888764 47888763
No 304
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=30.55 E-value=57 Score=26.84 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=31.3
Q ss_pred hCCCcEEEEccchhHHHHHHHHHhhcCce-EEEEeCCCC
Q 004880 494 ARNHKVLVFSQWTKILDIMEYYFNEKGYE-VCRIDGSVR 531 (725)
Q Consensus 494 ~~~~kvlIFsq~~~~ld~l~~~L~~~g~~-~~~l~G~~~ 531 (725)
..+..++|||..-.........|...|++ +..++|++.
T Consensus 56 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 56 DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp CTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 56788999999877777778888888995 888999865
No 305
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=30.37 E-value=36 Score=27.36 Aligned_cols=35 Identities=17% Similarity=0.491 Sum_probs=29.2
Q ss_pred CcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCC
Q 004880 497 HKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVR 531 (725)
Q Consensus 497 ~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~ 531 (725)
.+++|||+.-.........|...|+++..++|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999877777778888889999778888764
No 306
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=30.36 E-value=1.4e+02 Score=32.44 Aligned_cols=76 Identities=11% Similarity=0.124 Sum_probs=55.8
Q ss_pred hcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEeccc
Q 004880 479 CGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRA 558 (725)
Q Consensus 479 s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~a 558 (725)
+||-. .-++..+. .+.++||.++....+....+.|...|+++..++|+.+..++......+.. +...++++++..
T Consensus 51 sGKTl--~~~lp~l~-~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~--~~~~ilv~Tpe~ 125 (523)
T 1oyw_A 51 GGKSL--CYQIPALL-LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRT--GQIRLLYIAPER 125 (523)
T ss_dssp HHHHH--HHHHHHHH-SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHH--TCCSEEEECHHH
T ss_pred cHHHH--HHHHHHHH-hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc--CCCCEEEECHHH
Confidence 67763 22334333 34679999999998888888888889999999999999888888888876 345565665543
Q ss_pred c
Q 004880 559 G 559 (725)
Q Consensus 559 g 559 (725)
.
T Consensus 126 l 126 (523)
T 1oyw_A 126 L 126 (523)
T ss_dssp H
T ss_pred H
Confidence 3
No 307
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=30.19 E-value=27 Score=29.00 Aligned_cols=38 Identities=11% Similarity=0.224 Sum_probs=30.5
Q ss_pred hCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCC
Q 004880 494 ARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVR 531 (725)
Q Consensus 494 ~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~ 531 (725)
..++.++|||..-........+|...|++.+.+.|++.
T Consensus 54 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 35678999998766666777888899999888988754
No 308
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=29.85 E-value=2.5e+02 Score=29.34 Aligned_cols=53 Identities=19% Similarity=0.116 Sum_probs=31.6
Q ss_pred HHHHHHH-HhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhC----CCCCCcEEEEcCcc
Q 004880 163 GVKWLIS-LWQNGLNGILADQMGLGKTIQTIAFLAHLKGN----GLHGPYLVIAPLST 215 (725)
Q Consensus 163 gv~~l~~-~~~~~~~~ILademGlGKT~qaiali~~l~~~----~~~~~~LIV~P~sl 215 (725)
.+.+++. -+..|.-..|+-+.|+|||..+..++...... +..+++++|.-...
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~ 223 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT 223 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc
Confidence 3555551 12333345789999999998877655443221 13456788876543
No 309
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=29.79 E-value=1.2e+02 Score=28.41 Aligned_cols=87 Identities=14% Similarity=0.086 Sum_probs=47.2
Q ss_pred hcHHHH-HHHHHHHHhh--CCCcEEEEccchhHHHHHHHHHh----hcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceE
Q 004880 479 CGKFRL-LDRLLARLFA--RNHKVLVFSQWTKILDIMEYYFN----EKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRI 551 (725)
Q Consensus 479 s~K~~~-L~~ll~~l~~--~~~kvlIFsq~~~~ld~l~~~L~----~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v 551 (725)
+||-.. +.-++..+.. .+.++||.+.....+..+.+.+. ..++.+..++|+.+..+.... +. ...|
T Consensus 62 sGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~----~~~i 134 (224)
T 1qde_A 62 TGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR----DAQI 134 (224)
T ss_dssp SSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT----TCSE
T ss_pred CcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC----CCCE
Confidence 788765 5555555432 35689999998887665555544 347889999998775443322 22 1345
Q ss_pred EEEecc-cc-----cCCCCCCCCCEEEE
Q 004880 552 FLLSTR-AG-----GLGINLTAADTCIL 573 (725)
Q Consensus 552 ~Llst~-ag-----g~GiNL~~a~~VI~ 573 (725)
+++|. .. ...+++...+.||+
T Consensus 135 -iv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 135 -VVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp -EEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred -EEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 55553 21 23455666666665
No 310
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=29.62 E-value=45 Score=36.58 Aligned_cols=39 Identities=18% Similarity=0.137 Sum_probs=25.7
Q ss_pred ccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHH
Q 004880 156 LKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAH 197 (725)
Q Consensus 156 Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~ 197 (725)
+.+.++..+.+. ...|.+.+++-++|+|||...-+++..
T Consensus 245 ~~~~~l~~l~~~---v~~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 245 VPSGVLAYLWLA---IEHKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp SCHHHHHHHHHH---HHTTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCHHHHHHHHHH---HhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 334444444443 356778899999999999765555443
No 311
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=29.60 E-value=1.4e+02 Score=30.21 Aligned_cols=38 Identities=13% Similarity=0.046 Sum_probs=26.5
Q ss_pred CccEEEEccccc-cCC-cchHHHHHHhcCCCCcEEEEecc
Q 004880 280 NWKYLVVDEGHR-LKN-PKCKLLKELKYIPIGNKLLLTGT 317 (725)
Q Consensus 280 ~~~~vIvDEaH~-ikn-~~s~~~~~l~~l~~~~rllLTgT 317 (725)
+..+|||||+|. +.. ....+.+.+...+....+++++|
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~ 115 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGN 115 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEES
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcC
Confidence 468999999999 743 33446666666666777777665
No 312
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=29.58 E-value=1.6e+02 Score=32.29 Aligned_cols=46 Identities=22% Similarity=0.141 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHhhhhc-CccEEEEccccccCCcchHHHHHHhcCCCCcEEEEecc
Q 004880 264 SYEVALSDARKYLRHY-NWKYLVVDEGHRLKNPKCKLLKELKYIPIGNKLLLTGT 317 (725)
Q Consensus 264 sye~~~~~~~~~l~~~-~~~~vIvDEaH~ikn~~s~~~~~l~~l~~~~rllLTgT 317 (725)
+.+.+...+...+... +.-+||+|.+|.. ..+..+....++++|.-
T Consensus 219 ~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--------~~l~~l~~~~~ilvTsR 265 (591)
T 1z6t_A 219 NIEEAKDRLRILMLRKHPRSLLILDDVWDS--------WVLKAFDSQCQILLTTR 265 (591)
T ss_dssp SHHHHHHHHHHHHHHTCTTCEEEEEEECCH--------HHHHTTCSSCEEEEEES
T ss_pred CHHHHHHHHHHHHccCCCCeEEEEeCCCCH--------HHHHHhcCCCeEEEECC
Confidence 3444444444445442 3568999999862 23455667778888853
No 313
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=29.10 E-value=2.3e+02 Score=25.45 Aligned_cols=66 Identities=9% Similarity=0.182 Sum_probs=49.2
Q ss_pred CCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccCCCCCCCCCEEEEe
Q 004880 495 RNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILY 574 (725)
Q Consensus 495 ~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~~ 574 (725)
....+.|.+........+...|...|+++..+++... .|. +. +.++|-...-|+- .+.||++
T Consensus 60 g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~~---~~---v~v~t~~~~KGlE---f~~V~~~ 121 (174)
T 3dmn_A 60 ERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RLA---PG---VIVVPSFLAKGLE---FDAVIVW 121 (174)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CCC---SS---EEEEEGGGCTTCC---EEEEEEE
T ss_pred CCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------ccC---CC---eEEEEccccCCcC---CCEEEEe
Confidence 3567888888888899999999999999988876542 121 23 4667777778865 7899999
Q ss_pred CCCC
Q 004880 575 DSDW 578 (725)
Q Consensus 575 D~~w 578 (725)
++..
T Consensus 122 ~~~~ 125 (174)
T 3dmn_A 122 NANQ 125 (174)
T ss_dssp TCBT
T ss_pred cCCc
Confidence 8764
No 314
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=28.95 E-value=2.5e+02 Score=23.32 Aligned_cols=91 Identities=12% Similarity=0.097 Sum_probs=45.7
Q ss_pred CCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCC--CCceEEEEecccccCC-CCCC--CCCE
Q 004880 496 NHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVN--SSYRIFLLSTRAGGLG-INLT--AADT 570 (725)
Q Consensus 496 ~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~--~~~~v~Llst~agg~G-iNL~--~a~~ 570 (725)
...+..+......++.+ ....+..+.+|-.++...-.+.+...+... ..+.+++++......- .... +|+.
T Consensus 26 ~~~v~~~~~~~~a~~~~----~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~ 101 (140)
T 3n53_A 26 EYLVIESKNEKEALEQI----DHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADD 101 (140)
T ss_dssp TSEEEEESSHHHHHHHH----HHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTCCCSE
T ss_pred cceEEEeCCHHHHHHHH----hcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCe
Confidence 35555555544444444 334577888887777656666666666533 4566766665432221 1111 2333
Q ss_pred EEEeCCCCCcchhhhHhHhhHh
Q 004880 571 CILYDSDWNPQMDLQAMDRCHR 592 (725)
Q Consensus 571 VI~~D~~wNp~~~~Qa~gR~~R 592 (725)
+ +--|+++....+++.++.+
T Consensus 102 ~--l~KP~~~~~l~~~i~~~~~ 121 (140)
T 3n53_A 102 Y--LTKPFNRNDLLSRIEIHLR 121 (140)
T ss_dssp E--EESSCCHHHHHHHHHHHHH
T ss_pred e--eeCCCCHHHHHHHHHHHHh
Confidence 3 3346777777777776655
No 315
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=28.84 E-value=46 Score=34.52 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=20.7
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 004880 174 GLNGILADQMGLGKTIQTIAFLAHL 198 (725)
Q Consensus 174 ~~~~ILademGlGKT~qaiali~~l 198 (725)
..+.+|.-++|+|||..|-+++..+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999998888777654
No 316
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=28.73 E-value=39 Score=27.66 Aligned_cols=38 Identities=11% Similarity=0.224 Sum_probs=31.3
Q ss_pred hCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCC
Q 004880 494 ARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVR 531 (725)
Q Consensus 494 ~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~ 531 (725)
..+..++|||..-.........|...|+++..++|++.
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 35678999999876777788888889999999999754
No 317
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=28.71 E-value=88 Score=25.79 Aligned_cols=72 Identities=8% Similarity=0.130 Sum_probs=30.7
Q ss_pred hcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccC----CCCCCCCCEEEEeCCCCCcchhhhHhHhhHh
Q 004880 518 EKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGL----GINLTAADTCILYDSDWNPQMDLQAMDRCHR 592 (725)
Q Consensus 518 ~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~----GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~R 592 (725)
.....++.+|-.++...-.+.+...+...+...++++|...... .+. .+|+. ++.-|+++....+++.++.+
T Consensus 45 ~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~-~ga~~--~l~Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 45 DVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVITGHGDVPMAVEAMK-AGAVD--FIEKPFEDTVIIEAIERASE 120 (126)
T ss_dssp GCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEEECTTCHHHHHHHHH-TTCSE--EEESSCCHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHH-hCHHH--heeCCCCHHHHHHHHHHHHH
Confidence 33455666665444322233344443322344555555432210 111 12222 22335566666666665554
No 318
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=28.60 E-value=70 Score=33.95 Aligned_cols=53 Identities=17% Similarity=0.151 Sum_probs=31.3
Q ss_pred cccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEE
Q 004880 155 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 211 (725)
Q Consensus 155 ~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~ 211 (725)
.+.+-+...+..++ ...+...+|.-++|+|||...-+++..+... .+.++++-
T Consensus 150 g~~~~~~~~L~~l~--~~~ggii~I~GpnGSGKTTlL~allg~l~~~--~g~I~~~e 202 (418)
T 1p9r_A 150 GMTAHNHDNFRRLI--KRPHGIILVTGPTGSGKSTTLYAGLQELNSS--ERNILTVE 202 (418)
T ss_dssp CCCHHHHHHHHHHH--TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT--TSCEEEEE
T ss_pred CCCHHHHHHHHHHH--HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC--CCEEEEec
Confidence 34445555555553 1233334788999999998877766655332 34555543
No 319
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=28.39 E-value=47 Score=35.88 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=23.5
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHhC
Q 004880 173 NGLNGILADQMGLGKTIQTIAFLAHLKGN 201 (725)
Q Consensus 173 ~~~~~ILademGlGKT~qaiali~~l~~~ 201 (725)
...+.+|.-+.|+|||..+-+++..+...
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l~~~ 228 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINN 228 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSS
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhC
Confidence 34567999999999999998888877653
No 320
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=28.22 E-value=78 Score=24.60 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=27.5
Q ss_pred hCCCcEEEEccchhHHHHHHHHHhhcCce-EEEEeCCCC
Q 004880 494 ARNHKVLVFSQWTKILDIMEYYFNEKGYE-VCRIDGSVR 531 (725)
Q Consensus 494 ~~~~kvlIFsq~~~~ld~l~~~L~~~g~~-~~~l~G~~~ 531 (725)
..+.+++|||+.-.........|...|++ +..+ |++.
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 45788999999866667777888888986 4445 6644
No 321
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=28.06 E-value=1.3e+02 Score=25.10 Aligned_cols=91 Identities=11% Similarity=0.103 Sum_probs=37.8
Q ss_pred CCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccCCC-CC--CCCCEEE
Q 004880 496 NHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGI-NL--TAADTCI 572 (725)
Q Consensus 496 ~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~Gi-NL--~~a~~VI 572 (725)
|..+..+......+..+ ....+.++.++-.++...-.+.+...+...+...+++++......-. .. .+|+.++
T Consensus 27 g~~v~~~~~~~~a~~~~----~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l 102 (136)
T 1mvo_A 27 GYDVITASDGEEALKKA----ETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYM 102 (136)
T ss_dssp TCEEEEESSHHHHHHHH----HHHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECTTCCCCHHHHHHTTCCEEE
T ss_pred CcEEEEecCHHHHHHHH----hhcCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHhCCCCEEE
Confidence 44454444333333322 23345666666554432223344444332234445555443221100 00 1223222
Q ss_pred EeCCCCCcchhhhHhHhhHh
Q 004880 573 LYDSDWNPQMDLQAMDRCHR 592 (725)
Q Consensus 573 ~~D~~wNp~~~~Qa~gR~~R 592 (725)
--|.++....+++.++.+
T Consensus 103 --~KP~~~~~l~~~i~~~~~ 120 (136)
T 1mvo_A 103 --TKPFSPREVNARVKAILR 120 (136)
T ss_dssp --ESSCCHHHHHHHHHHHHH
T ss_pred --ECCCCHHHHHHHHHHHHH
Confidence 235566666666665554
No 322
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=27.87 E-value=62 Score=28.48 Aligned_cols=38 Identities=8% Similarity=-0.023 Sum_probs=29.0
Q ss_pred hCCCcEEEEccchhHHHHHHHHHhhcCc-eEEEEeCCCC
Q 004880 494 ARNHKVLVFSQWTKILDIMEYYFNEKGY-EVCRIDGSVR 531 (725)
Q Consensus 494 ~~~~kvlIFsq~~~~ld~l~~~L~~~g~-~~~~l~G~~~ 531 (725)
..+.+++|||+.-.........|...|+ ++..++|++.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 4578899999886656677788888999 4889999975
No 323
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=27.85 E-value=61 Score=28.12 Aligned_cols=28 Identities=14% Similarity=0.254 Sum_probs=17.5
Q ss_pred CcEEEEccchhHHHHHHHHHhhcCceEE
Q 004880 497 HKVLVFSQWTKILDIMEYYFNEKGYEVC 524 (725)
Q Consensus 497 ~kvlIFsq~~~~ld~l~~~L~~~g~~~~ 524 (725)
.++||..........+...|...|+.+.
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~ 31 (155)
T 1qkk_A 4 PSVFLIDDDRDLRKAMQQTLELAGFTVS 31 (155)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCcEEE
Confidence 4566666666666666666666666544
No 324
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=27.66 E-value=58 Score=32.75 Aligned_cols=32 Identities=22% Similarity=0.203 Sum_probs=24.7
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEE
Q 004880 178 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 211 (725)
Q Consensus 178 ILademGlGKT~qaiali~~l~~~~~~~~~LIV~ 211 (725)
|..-..|.|||.+++.++..+...| .++|+|-
T Consensus 109 vts~kgG~GKTtva~nLA~~lA~~G--~rVLLID 140 (299)
T 3cio_A 109 ITGATPDSGKTFVSSTLAAVIAQSD--QKVLFID 140 (299)
T ss_dssp EEESSSSSCHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred EECCCCCCChHHHHHHHHHHHHhCC--CcEEEEE
Confidence 3345679999999999998887754 5778775
No 325
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=27.48 E-value=82 Score=25.75 Aligned_cols=24 Identities=13% Similarity=0.320 Sum_probs=10.3
Q ss_pred EEEEccchhHHHHHHHHHhhcCce
Q 004880 499 VLVFSQWTKILDIMEYYFNEKGYE 522 (725)
Q Consensus 499 vlIFsq~~~~ld~l~~~L~~~g~~ 522 (725)
++|..........+...|...|+.
T Consensus 8 ilivdd~~~~~~~l~~~L~~~g~~ 31 (127)
T 2gkg_A 8 ILIVESDTALSATLRSALEGRGFT 31 (127)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTCE
T ss_pred EEEEeCCHHHHHHHHHHHHhcCce
Confidence 444444444444444444444443
No 326
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=27.25 E-value=67 Score=26.22 Aligned_cols=69 Identities=12% Similarity=0.192 Sum_probs=31.7
Q ss_pred cCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccC----CCCCCCCCEEEEeCCCCCcchhhhHhHhh
Q 004880 519 KGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGL----GINLTAADTCILYDSDWNPQMDLQAMDRC 590 (725)
Q Consensus 519 ~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~----GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~ 590 (725)
..+..+.+|-.++...-.+.++..+...+...++++|...... .+. .+|+.. +.-|+++....+++.++
T Consensus 46 ~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~-~g~~~~--l~KP~~~~~l~~~i~~~ 118 (120)
T 1tmy_A 46 LKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIK-AGAKDF--IVKPFQPSRVVEALNKV 118 (120)
T ss_dssp HCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEECTTCHHHHHHHHH-TTCCEE--EESSCCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHH-hCccee--EeCCCCHHHHHHHHHHH
Confidence 3466677776655433334444443322345555665432211 111 122222 23456666666666554
No 327
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=27.18 E-value=57 Score=31.14 Aligned_cols=33 Identities=15% Similarity=0.130 Sum_probs=24.1
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEE
Q 004880 178 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 211 (725)
Q Consensus 178 ILademGlGKT~qaiali~~l~~~~~~~~~LIV~ 211 (725)
+..---|.|||..++.++..+... ...++|+|=
T Consensus 9 v~s~kGGvGKTt~a~~LA~~la~~-~g~~VlliD 41 (245)
T 3ea0_A 9 FVSAKGGDGGSCIAANFAFALSQE-PDIHVLAVD 41 (245)
T ss_dssp EEESSTTSSHHHHHHHHHHHHTTS-TTCCEEEEE
T ss_pred EECCCCCcchHHHHHHHHHHHHhC-cCCCEEEEE
Confidence 445567999999999998888765 124666665
No 328
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=27.17 E-value=1.2e+02 Score=29.61 Aligned_cols=52 Identities=19% Similarity=0.356 Sum_probs=34.6
Q ss_pred cCCCCeEEEcCCCCcHHHHHHHHHHHHHhCC---------CCCCcEEEEcCccHHHHHHHHH
Q 004880 172 QNGLNGILADQMGLGKTIQTIAFLAHLKGNG---------LHGPYLVIAPLSTLSNWVNEIS 224 (725)
Q Consensus 172 ~~~~~~ILademGlGKT~qaiali~~l~~~~---------~~~~~LIV~P~sll~~W~~E~~ 224 (725)
..|.-.+|+-+.|+|||..+..++..+. .+ ..++++++.......+....+.
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~-~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~ 88 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIA-GGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLH 88 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH-TCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHh-cCCCcCCCccCCCccEEEEECCCCHHHHHHHHH
Confidence 4466678899999999999888877554 32 1357777776555544433333
No 329
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=26.91 E-value=43 Score=30.47 Aligned_cols=25 Identities=28% Similarity=0.101 Sum_probs=20.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 004880 174 GLNGILADQMGLGKTIQTIAFLAHL 198 (725)
Q Consensus 174 ~~~~ILademGlGKT~qaiali~~l 198 (725)
+...+|.-.+|+|||.++-.+...+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567888899999999888777655
No 330
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=26.86 E-value=1.9e+02 Score=23.36 Aligned_cols=61 Identities=10% Similarity=0.019 Sum_probs=41.4
Q ss_pred CCCcEEEEc-cchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEec
Q 004880 495 RNHKVLVFS-QWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLST 556 (725)
Q Consensus 495 ~~~kvlIFs-q~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst 556 (725)
...+|.||+ .+......+..+|...|++|..++=....+.+.++.+.. .+...+.++++.-
T Consensus 14 ~~~~v~vy~~~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~~~~l~~~~-~g~~~vP~ifi~g 75 (99)
T 3qmx_A 14 VSAKIEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARA-NGKRSLPQIFIDD 75 (99)
T ss_dssp CCCCEEEEECTTCHHHHHHHHHHHHHTCCCEEEECTTCHHHHHHHHHHT-TTCCCSCEEEETT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCCCEEEEcCCCHHHHHHHHHHh-CCCCCCCEEEECC
Confidence 356788886 456677888889999999999998887766665554433 1234455555543
No 331
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=25.74 E-value=85 Score=26.67 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=14.9
Q ss_pred CcEEEEccchhHHHHHHHHHhhcCce
Q 004880 497 HKVLVFSQWTKILDIMEYYFNEKGYE 522 (725)
Q Consensus 497 ~kvlIFsq~~~~ld~l~~~L~~~g~~ 522 (725)
.++||..........+...|...|+.
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~~~~ 31 (144)
T 3kht_A 6 KRVLVVEDNPDDIALIRRVLDRKDIH 31 (144)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTCC
T ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCC
Confidence 35555555555556666666555554
No 332
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=25.67 E-value=37 Score=35.24 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=22.5
Q ss_pred cCCCCcHHHHHHHHHHHHHhCCCCCCcEEEE
Q 004880 181 DQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 211 (725)
Q Consensus 181 demGlGKT~qaiali~~l~~~~~~~~~LIV~ 211 (725)
.--|.|||..++.++..+...| .++|+|=
T Consensus 9 ~KGGvGKTT~a~nLA~~LA~~G--~rVLlID 37 (361)
T 3pg5_A 9 NKGGVGKTTLSTNVAHYFALQG--KRVLYVD 37 (361)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred CCCCCcHHHHHHHHHHHHHhCC--CcEEEEE
Confidence 3468999999999988887653 5777774
No 333
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=25.57 E-value=68 Score=26.17 Aligned_cols=96 Identities=6% Similarity=0.039 Sum_probs=45.4
Q ss_pred CCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccC-CCCCCCCCEEEE
Q 004880 495 RNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGL-GINLTAADTCIL 573 (725)
Q Consensus 495 ~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~-GiNL~~a~~VI~ 573 (725)
.|..+..+......++.+ ......++.++-.++...-.+.+...+...+...++++|...... -...-.+...=+
T Consensus 26 ~~~~v~~~~~~~~~~~~~----~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~ 101 (124)
T 1dc7_A 26 AGLTCTTFENGNEVLAAL----ASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDY 101 (124)
T ss_dssp TTCCCEECCCTTHHHHHS----SSCCCSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCCBCCSTTSTTTTSSCTTCCCCC
T ss_pred CCcEEEEeCCHHHHHHHH----hcCCCCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHhcCcceE
Confidence 345555444443333322 233456666776666544333444443322345555555432211 111111111123
Q ss_pred eCCCCCcchhhhHhHhhHhcC
Q 004880 574 YDSDWNPQMDLQAMDRCHRIG 594 (725)
Q Consensus 574 ~D~~wNp~~~~Qa~gR~~RiG 594 (725)
+.-|+++....+++.++.+..
T Consensus 102 l~kp~~~~~l~~~i~~~~~~~ 122 (124)
T 1dc7_A 102 LPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp BCSSCCHHHHHHHHHHHHHHT
T ss_pred eeCCCCHHHHHHHHHHHHHhh
Confidence 455778888888887776543
No 334
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=25.30 E-value=60 Score=29.40 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=21.8
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCC
Q 004880 174 GLNGILADQMGLGKTIQTIAFLAHLKGNG 202 (725)
Q Consensus 174 ~~~~ILademGlGKT~qaiali~~l~~~~ 202 (725)
+...+|.-.+|+|||.++-.+...+...+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 31 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEG 31 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 34457888899999999888777665443
No 335
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=25.30 E-value=65 Score=33.21 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=26.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEE
Q 004880 177 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 211 (725)
Q Consensus 177 ~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~ 211 (725)
.+..---|.|||.+|.+++..+...| .++|+|-
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~G--~rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEKG--LKVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHSS--CCEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHCC--CeEEEEe
Confidence 35667789999999999998888764 4777777
No 336
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=25.19 E-value=57 Score=29.52 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=20.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 004880 174 GLNGILADQMGLGKTIQTIAFLAHL 198 (725)
Q Consensus 174 ~~~~ILademGlGKT~qaiali~~l 198 (725)
+...+|.-.+|+|||.++-.+...+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4567899999999998887766654
No 337
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=25.11 E-value=75 Score=27.48 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=18.3
Q ss_pred CCcEEEEccchhHHHHHHHHHhhcCceEE
Q 004880 496 NHKVLVFSQWTKILDIMEYYFNEKGYEVC 524 (725)
Q Consensus 496 ~~kvlIFsq~~~~ld~l~~~L~~~g~~~~ 524 (725)
..+|||..........+...|...|+.+.
T Consensus 14 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~ 42 (153)
T 3hv2_A 14 RPEILLVDSQEVILQRLQQLLSPLPYTLH 42 (153)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTSSCEEE
T ss_pred CceEEEECCCHHHHHHHHHHhcccCcEEE
Confidence 34666666666666667776666665544
No 338
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=25.00 E-value=63 Score=31.93 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=22.9
Q ss_pred cCCCCcHHHHHHHHHHHHHhCCCCCCcEEEE
Q 004880 181 DQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 211 (725)
Q Consensus 181 demGlGKT~qaiali~~l~~~~~~~~~LIV~ 211 (725)
-..|.|||..++.++..+...| .++|+|-
T Consensus 90 ~kgG~GKTt~a~nLA~~lA~~G--~rVLLID 118 (271)
T 3bfv_A 90 EAPGAGKSTIAANLAVAYAQAG--YKTLIVD 118 (271)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred CCCCCcHHHHHHHHHHHHHhCC--CeEEEEe
Confidence 4579999999999998888754 4677764
No 339
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=24.94 E-value=1e+02 Score=25.67 Aligned_cols=94 Identities=10% Similarity=0.046 Sum_probs=45.8
Q ss_pred CCCcEE-EEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccCCCC-C--CCCCE
Q 004880 495 RNHKVL-VFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGIN-L--TAADT 570 (725)
Q Consensus 495 ~~~kvl-IFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~GiN-L--~~a~~ 570 (725)
.|..++ .++.....+..+. ...+..+.++-.++...-.+.+...+...+...+++++...-..-.. . .+|+.
T Consensus 24 ~g~~v~~~~~~~~~a~~~~~----~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~ 99 (134)
T 3f6c_A 24 NDIEILAELTEGGSAVQRVE----TLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANG 99 (134)
T ss_dssp TTEEEEEEESSSTTHHHHHH----HHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEECC---CTHHHHHHTTCSE
T ss_pred CCcEEEEEcCCHHHHHHHHH----hcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEEeCCCChHHHHHHHHhCCCE
Confidence 345554 4444444444443 33566777776655444445555554434455666666543221110 0 12333
Q ss_pred EEEeCCCCCcchhhhHhHhhHhcC
Q 004880 571 CILYDSDWNPQMDLQAMDRCHRIG 594 (725)
Q Consensus 571 VI~~D~~wNp~~~~Qa~gR~~RiG 594 (725)
++ .-|.++....+++.++.+-+
T Consensus 100 ~l--~kp~~~~~l~~~i~~~~~~~ 121 (134)
T 3f6c_A 100 FV--SKKEGMNNIIAAIEAAKNGY 121 (134)
T ss_dssp EE--EGGGCTHHHHHHHHHHHTTC
T ss_pred EE--eCCCCHHHHHHHHHHHHCCC
Confidence 32 23566777777777666544
No 340
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=24.90 E-value=39 Score=33.50 Aligned_cols=22 Identities=23% Similarity=-0.008 Sum_probs=18.8
Q ss_pred CeEEEcCCCCcHHHHHHHHHHH
Q 004880 176 NGILADQMGLGKTIQTIAFLAH 197 (725)
Q Consensus 176 ~~ILademGlGKT~qaiali~~ 197 (725)
+.+|.-+.|+|||..+.+++..
T Consensus 106 ~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3578899999999999988775
No 341
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=24.82 E-value=50 Score=30.63 Aligned_cols=26 Identities=35% Similarity=0.342 Sum_probs=21.0
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHH
Q 004880 173 NGLNGILADQMGLGKTIQTIAFLAHL 198 (725)
Q Consensus 173 ~~~~~ILademGlGKT~qaiali~~l 198 (725)
.+...+|.-.+|+|||..+-.++..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45567889999999998887777665
No 342
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=24.66 E-value=71 Score=31.87 Aligned_cols=33 Identities=15% Similarity=0.130 Sum_probs=25.4
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEc
Q 004880 178 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 212 (725)
Q Consensus 178 ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P 212 (725)
|..-..|.|||..++.++..+...| .++|+|--
T Consensus 97 vts~kgG~GKTtva~nLA~~lA~~G--~rVLLID~ 129 (286)
T 3la6_A 97 MTGVSPSIGMTFVCANLAAVISQTN--KRVLLIDC 129 (286)
T ss_dssp EEESSSSSSHHHHHHHHHHHHHTTT--CCEEEEEC
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCC--CCEEEEec
Confidence 4556789999999999988887654 47777743
No 343
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=24.51 E-value=3e+02 Score=22.83 Aligned_cols=17 Identities=6% Similarity=-0.046 Sum_probs=8.4
Q ss_pred CCCCCcchhhhHhHhhH
Q 004880 575 DSDWNPQMDLQAMDRCH 591 (725)
Q Consensus 575 D~~wNp~~~~Qa~gR~~ 591 (725)
.-|.++....+++.++.
T Consensus 106 ~KP~~~~~l~~~i~~~l 122 (140)
T 3h5i_A 106 MKSATEQVLITIVEMAL 122 (140)
T ss_dssp ETTCCHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 34455555555554443
No 344
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} SCOP: c.61.1.1
Probab=24.47 E-value=1.3e+02 Score=28.61 Aligned_cols=58 Identities=19% Similarity=0.211 Sum_probs=40.3
Q ss_pred CCCeEEEcC-CCCcHHHHHHHHHHHHHhCCCC-CCcEEEEcCccHHHHHHHHHHhCCCceEEE
Q 004880 174 GLNGILADQ-MGLGKTIQTIAFLAHLKGNGLH-GPYLVIAPLSTLSNWVNEISRFVPSVSAII 234 (725)
Q Consensus 174 ~~~~ILade-mGlGKT~qaiali~~l~~~~~~-~~~LIV~P~sll~~W~~E~~~~~p~~~v~~ 234 (725)
++.+||.|+ ..+|.|+. +.+..++.+|.. ..+.++|+... ..=.+.+.+.+|++.+++
T Consensus 129 ~~~VilvD~~laTG~T~~--~ai~~L~~~G~pe~~I~~~~~vaa-~egl~~l~~~~P~v~i~t 188 (217)
T 3dmp_A 129 DRIFILCDPMVATGYSAA--HAIDVLKRRGVPGERLMFLALVAA-PEGVQVFQDAHPDVKLYV 188 (217)
T ss_dssp TCEEEEECSEESSSHHHH--HHHHHHHTTTCCGGGEEEECSEEC-HHHHHHHHHHCTTCEEEE
T ss_pred CCEEEEEcCcccccHHHH--HHHHHHHHcCCCcCeEEEEEEEeC-HHHHHHHHHHCCCCEEEE
Confidence 567899998 57999954 456778887754 56777776443 444567777789876544
No 345
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=24.28 E-value=47 Score=34.53 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=17.8
Q ss_pred HHhcCCCCe-EEE-cCCCCcHHHHHHH
Q 004880 169 SLWQNGLNG-ILA-DQMGLGKTIQTIA 193 (725)
Q Consensus 169 ~~~~~~~~~-ILa-demGlGKT~qaia 193 (725)
..+.+|.+| |+| -.+|+|||.++.+
T Consensus 78 ~~~~~G~n~tifAYGqTGSGKTyTM~G 104 (360)
T 1ry6_A 78 DLYENGCVCSCFAYGQTGSGKTYTMLG 104 (360)
T ss_dssp HHHHHCCEEEEEEECCTTSSHHHHHHB
T ss_pred hhccCCceeEEEeeCCCCCCCCEEEec
Confidence 344557776 555 6899999988754
No 346
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=24.18 E-value=1.5e+02 Score=31.77 Aligned_cols=86 Identities=13% Similarity=0.079 Sum_probs=64.2
Q ss_pred CcEEEEccchhHHHHHHHHHhhcCc--eEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccCCCCCCCCCEEEEe
Q 004880 497 HKVLVFSQWTKILDIMEYYFNEKGY--EVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILY 574 (725)
Q Consensus 497 ~kvlIFsq~~~~ld~l~~~L~~~g~--~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~~ 574 (725)
.++=|+||+-.+...+.+++..+|+ .++.=.|+...-.-.+.++.|.+ |+..+++++- .
T Consensus 150 G~v~~vsqSG~~~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~d~l~~~~~-D~~t~~I~l~------------------~ 210 (457)
T 2csu_A 150 GNVAFISQSGALGAGIVYKTIKEDIGFSKFISVGNMADVDFAELMEYLAD-TEEDKAIALY------------------I 210 (457)
T ss_dssp CSEEEEESCHHHHHHHHHHHHHTTCEESEEEECTTCCSSCHHHHHHHHTT-CSSCCEEEEE------------------E
T ss_pred CCEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCCcCCCCHHHHHHHHhc-CCCCCEEEEE------------------E
Confidence 5699999999988888888888754 55666676665567788999987 6676665444 3
Q ss_pred CCCCCcchhhhHhHhhHhcCCCCceEEEEE
Q 004880 575 DSDWNPQMDLQAMDRCHRIGQTKPVHVYRL 604 (725)
Q Consensus 575 D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrl 604 (725)
+.--|+..+..+.-|+.| +|||.+|..
T Consensus 211 E~i~~~~~f~~~a~~~~~---~KPVv~~k~ 237 (457)
T 2csu_A 211 EGVRNGKKFMEVAKRVTK---KKPIIALKA 237 (457)
T ss_dssp SCCSCHHHHHHHHHHHHH---HSCEEEEEC
T ss_pred ecCCCHHHHHHHHHHhcC---CCCEEEEEc
Confidence 332388889888888754 799998875
No 347
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=24.18 E-value=1.5e+02 Score=32.08 Aligned_cols=88 Identities=18% Similarity=0.222 Sum_probs=48.5
Q ss_pred hcHHHHHHHHHHHHhhC-----CCcEEEEccchhHHHHHHHHHh----hcCceEEEEeCCCCHHHHHHHHHHHhCCCCCc
Q 004880 479 CGKFRLLDRLLARLFAR-----NHKVLVFSQWTKILDIMEYYFN----EKGYEVCRIDGSVRLDERKRQIQDFNDVNSSY 549 (725)
Q Consensus 479 s~K~~~L~~ll~~l~~~-----~~kvlIFsq~~~~ld~l~~~L~----~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~ 549 (725)
+||-....-.+...... +.++||.++....+..+...+. ..|+.+..++|+.+...+...+.. +.
T Consensus 33 sGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~ 106 (556)
T 4a2p_A 33 SGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE------DS 106 (556)
T ss_dssp SCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHH------HC
T ss_pred ChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhC------CC
Confidence 67865544333333332 7789999998776655554444 348999999999875544332221 12
Q ss_pred eEEEEecc-ccc----CC-C-CCCCCCEEEE
Q 004880 550 RIFLLSTR-AGG----LG-I-NLTAADTCIL 573 (725)
Q Consensus 550 ~v~Llst~-agg----~G-i-NL~~a~~VI~ 573 (725)
.| +++|. ..- .| + ++...+.||+
T Consensus 107 ~i-~v~T~~~l~~~~~~~~~~~~~~~~~vVi 136 (556)
T 4a2p_A 107 DI-IVVTPQILVNSFEDGTLTSLSIFTLMIF 136 (556)
T ss_dssp SE-EEECHHHHHHHHHSSSCCCSTTCSEEEE
T ss_pred CE-EEECHHHHHHHHHhCcccccccCCEEEE
Confidence 34 44543 221 12 3 5677777777
No 348
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=23.92 E-value=2.7e+02 Score=25.74 Aligned_cols=93 Identities=11% Similarity=0.063 Sum_probs=51.8
Q ss_pred CCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccC-CCCC--CCCCEE
Q 004880 495 RNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGL-GINL--TAADTC 571 (725)
Q Consensus 495 ~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~-GiNL--~~a~~V 571 (725)
.|..|..++.....++.+ ....+.++.+|-.++...-.+++...+...+.+.|++++...... -... .+|+-+
T Consensus 30 ~g~~v~~~~~~~~a~~~~----~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~ 105 (233)
T 1ys7_A 30 SGFEVATAVDGAEALRSA----TENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDY 105 (233)
T ss_dssp TTCEEEEESSHHHHHHHH----HHSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECCCTTTCCCTTTTTTCSEE
T ss_pred CCCEEEEECCHHHHHHHH----HhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCCCEE
Confidence 466666555544444433 344577888887665434445555555433466677776543221 1111 234443
Q ss_pred EEeCCCCCcchhhhHhHhhHhc
Q 004880 572 ILYDSDWNPQMDLQAMDRCHRI 593 (725)
Q Consensus 572 I~~D~~wNp~~~~Qa~gR~~Ri 593 (725)
+ .-|.++....+++.++.|-
T Consensus 106 l--~Kp~~~~~L~~~i~~~~~~ 125 (233)
T 1ys7_A 106 L--VKPFVLAELVARVKALLRR 125 (233)
T ss_dssp E--ESSCCHHHHHHHHHHHHHH
T ss_pred E--eCCCCHHHHHHHHHHHHhh
Confidence 3 3477888888888877654
No 349
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=23.75 E-value=1.3e+02 Score=32.42 Aligned_cols=57 Identities=19% Similarity=0.339 Sum_probs=37.8
Q ss_pred hcHHHHHHHHHHHHhhC-----CCcEEEEccchhHHHHHHHHH----hhcCceEEEEeCCCCHHHH
Q 004880 479 CGKFRLLDRLLARLFAR-----NHKVLVFSQWTKILDIMEYYF----NEKGYEVCRIDGSVRLDER 535 (725)
Q Consensus 479 s~K~~~L~~ll~~l~~~-----~~kvlIFsq~~~~ld~l~~~L----~~~g~~~~~l~G~~~~~~R 535 (725)
+||-....-.+...... +.++||.++....+......+ ...|+.+..++|+.+...+
T Consensus 30 sGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 95 (555)
T 3tbk_A 30 CGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVS 95 (555)
T ss_dssp SCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSC
T ss_pred ChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhh
Confidence 77875544444333332 788999999877655544444 4448999999999875444
No 350
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=23.60 E-value=57 Score=32.40 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=28.6
Q ss_pred EcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEE--c-CccHHHHHH
Q 004880 180 ADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA--P-LSTLSNWVN 221 (725)
Q Consensus 180 ademGlGKT~qaiali~~l~~~~~~~~~LIV~--P-~sll~~W~~ 221 (725)
.-.-|.|||..++.++..+...| .++|+|= | ...+..|..
T Consensus 11 s~KGGvGKTT~a~nLA~~La~~G--~~VlliD~D~~q~~l~~~l~ 53 (286)
T 2xj4_A 11 NEKGGAGKSTIAVHLVTALLYGG--AKVAVIDLDLRQRTSARFFE 53 (286)
T ss_dssp CSSSCTTHHHHHHHHHHHHHHTT--CCEEEEECCTTTCHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCC--CcEEEEECCCCCCCHHHHhC
Confidence 35679999999999998888764 4677764 3 345566654
No 351
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=23.43 E-value=48 Score=32.24 Aligned_cols=30 Identities=30% Similarity=0.398 Sum_probs=23.9
Q ss_pred EcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEE
Q 004880 180 ADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 211 (725)
Q Consensus 180 ademGlGKT~qaiali~~l~~~~~~~~~LIV~ 211 (725)
.-.-|.|||..++.++..+...| .++|+|-
T Consensus 13 s~kGGvGKTt~a~~LA~~la~~g--~~VlliD 42 (257)
T 1wcv_1 13 NQKGGVGKTTTAINLAAYLARLG--KRVLLVD 42 (257)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred eCCCCchHHHHHHHHHHHHHHCC--CCEEEEE
Confidence 35679999999999998888764 5788775
No 352
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=23.41 E-value=61 Score=28.05 Aligned_cols=38 Identities=13% Similarity=0.213 Sum_probs=31.2
Q ss_pred hCCCcEEEEccchhHHHHHHHHHhhcCce-EEEEeCCCC
Q 004880 494 ARNHKVLVFSQWTKILDIMEYYFNEKGYE-VCRIDGSVR 531 (725)
Q Consensus 494 ~~~~kvlIFsq~~~~ld~l~~~L~~~g~~-~~~l~G~~~ 531 (725)
..+..|+|||+.-.........|...|+. +..++|++.
T Consensus 84 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 84 QEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp GSSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 45788999999876666778888889996 889999865
No 353
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=23.34 E-value=1.6e+02 Score=33.99 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=35.7
Q ss_pred hcHHHHHHHHHHHHhhC-----CCcEEEEccchhHHHHHHHHH----hhcCceEEEEeCCCCHHHHH
Q 004880 479 CGKFRLLDRLLARLFAR-----NHKVLVFSQWTKILDIMEYYF----NEKGYEVCRIDGSVRLDERK 536 (725)
Q Consensus 479 s~K~~~L~~ll~~l~~~-----~~kvlIFsq~~~~ld~l~~~L----~~~g~~~~~l~G~~~~~~R~ 536 (725)
+||-....-.+...... +.++||.++....+......+ ...|+++..++|+.+...+.
T Consensus 274 sGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ 340 (797)
T 4a2q_A 274 SGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSV 340 (797)
T ss_dssp SCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CH
T ss_pred ChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhH
Confidence 77876544444433333 789999999887665544444 44499999999999765543
No 354
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=23.32 E-value=47 Score=34.84 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=23.6
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCC----CCCCcEEEE
Q 004880 178 ILADQMGLGKTIQTIAFLAHLKGNG----LHGPYLVIA 211 (725)
Q Consensus 178 ILademGlGKT~qaiali~~l~~~~----~~~~~LIV~ 211 (725)
+..---|.|||.+++.++..+...+ ...++|+|=
T Consensus 113 v~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD 150 (398)
T 3ez2_A 113 ISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVID 150 (398)
T ss_dssp ECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEE
T ss_pred EEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEe
Confidence 3335678999999999988887431 234666664
No 355
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=23.31 E-value=64 Score=28.40 Aligned_cols=38 Identities=11% Similarity=0.221 Sum_probs=30.9
Q ss_pred hCCCcEEEEccch--hHHHHHHHHHhhcCceEEEEeCCCC
Q 004880 494 ARNHKVLVFSQWT--KILDIMEYYFNEKGYEVCRIDGSVR 531 (725)
Q Consensus 494 ~~~~kvlIFsq~~--~~ld~l~~~L~~~g~~~~~l~G~~~ 531 (725)
..+.+|+|||..- .........|...|+++..++|++.
T Consensus 70 ~~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 70 SKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp CTTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 3567899999986 4566777888899999999999865
No 356
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=23.18 E-value=75 Score=32.38 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=26.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEc
Q 004880 177 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 212 (725)
Q Consensus 177 ~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P 212 (725)
.+..-.-|.|||..+.+++..+...| .++|+|--
T Consensus 22 ~v~sgkGGvGKTTva~~LA~~lA~~G--~rVllvD~ 55 (329)
T 2woo_A 22 IFVGGKGGVGKTTTSCSLAIQMSKVR--SSVLLIST 55 (329)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTSS--SCEEEEEC
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCC--CeEEEEEC
Confidence 35667889999999999998888764 47777753
No 357
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=23.10 E-value=2e+02 Score=23.85 Aligned_cols=95 Identities=7% Similarity=0.022 Sum_probs=46.8
Q ss_pred CCCc-EEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhC--CCCCceEEEEecccccCCC-CC--CCC
Q 004880 495 RNHK-VLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFND--VNSSYRIFLLSTRAGGLGI-NL--TAA 568 (725)
Q Consensus 495 ~~~k-vlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~--~~~~~~v~Llst~agg~Gi-NL--~~a 568 (725)
.|.. +..++.....++.+ ....+..+.++-.++...-.+++...+. ....+.+++++......-+ .. .+|
T Consensus 32 ~~~~~v~~~~~~~~a~~~l----~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~ 107 (143)
T 3cnb_A 32 FPYAKIKIAYNPFDAGDLL----HTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGA 107 (143)
T ss_dssp CTTCEEEEECSHHHHHHHH----HHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTC
T ss_pred cCccEEEEECCHHHHHHHH----HhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcCC
Confidence 4555 44444444444333 2344667777765554333455555544 2345566666544221100 00 123
Q ss_pred CEEEEeCCCCCcchhhhHhHhhHhcCC
Q 004880 569 DTCILYDSDWNPQMDLQAMDRCHRIGQ 595 (725)
Q Consensus 569 ~~VI~~D~~wNp~~~~Qa~gR~~RiGQ 595 (725)
+.++ .-|.++....+++.++.+.++
T Consensus 108 ~~~l--~kP~~~~~l~~~i~~~~~~~~ 132 (143)
T 3cnb_A 108 ETCF--GKPLNFTLLEKTIKQLVEQKK 132 (143)
T ss_dssp SEEE--ESSCCHHHHHHHHHHHHHTTC
T ss_pred cEEE--eCCCCHHHHHHHHHHHHHhhc
Confidence 3332 346677777777777766443
No 358
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=22.78 E-value=53 Score=28.19 Aligned_cols=38 Identities=16% Similarity=0.066 Sum_probs=30.7
Q ss_pred hCCCcEEEEccchhHHHHHHHHHhhcCce-EEEEeCCCC
Q 004880 494 ARNHKVLVFSQWTKILDIMEYYFNEKGYE-VCRIDGSVR 531 (725)
Q Consensus 494 ~~~~kvlIFsq~~~~ld~l~~~L~~~g~~-~~~l~G~~~ 531 (725)
..+.+++|||..-.........|...|++ +..++|++.
T Consensus 80 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 80 GQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp CTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 45788999999866667777888888985 888999975
No 359
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=22.75 E-value=44 Score=28.47 Aligned_cols=38 Identities=11% Similarity=0.154 Sum_probs=30.6
Q ss_pred hCCCcEEEEccchhH--HHHHHHHHhhcCceEEEEeCCCC
Q 004880 494 ARNHKVLVFSQWTKI--LDIMEYYFNEKGYEVCRIDGSVR 531 (725)
Q Consensus 494 ~~~~kvlIFsq~~~~--ld~l~~~L~~~g~~~~~l~G~~~ 531 (725)
..+.+++|||..-.. .......|...|+++..++|++.
T Consensus 69 ~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 69 DPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp CTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 356789999987654 67788888899999888999865
No 360
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=22.70 E-value=1e+02 Score=33.60 Aligned_cols=42 Identities=14% Similarity=0.209 Sum_probs=29.4
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCC--CcEEEEcCc
Q 004880 173 NGLNGILADQMGLGKTIQTIAFLAHLKGNGLHG--PYLVIAPLS 214 (725)
Q Consensus 173 ~~~~~ILademGlGKT~qaiali~~l~~~~~~~--~~LIV~P~s 214 (725)
.+.+.+++-.+|+|||...-+++..+......+ .++++=|+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 367889999999999998888887776543322 244444554
No 361
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=22.46 E-value=1.3e+02 Score=29.59 Aligned_cols=50 Identities=8% Similarity=-0.136 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEcCc
Q 004880 164 VKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS 214 (725)
Q Consensus 164 v~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV~P~s 214 (725)
+.-+..-+..|.-.+|+-+.|+|||..+..++..+.... ..+++++....
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~e~ 74 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAMLEE 74 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEESSS
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeCcC
Confidence 444443345566678999999999988887777665541 13777776543
No 362
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=22.38 E-value=83 Score=26.56 Aligned_cols=94 Identities=6% Similarity=0.069 Sum_probs=56.4
Q ss_pred CCCcEEEEccchhHHHHHHHHHhh-cCceEEEEeCCCC-HHHHHHHHHHHhC--CCCCceEEEEecccccC----CCCCC
Q 004880 495 RNHKVLVFSQWTKILDIMEYYFNE-KGYEVCRIDGSVR-LDERKRQIQDFND--VNSSYRIFLLSTRAGGL----GINLT 566 (725)
Q Consensus 495 ~~~kvlIFsq~~~~ld~l~~~L~~-~g~~~~~l~G~~~-~~~R~~~i~~F~~--~~~~~~v~Llst~agg~----GiNL~ 566 (725)
.|..|..++.....++ .+.. ..+.++.+|-.++ ...-.+++...+. ....+.|++++...-.. .+. .
T Consensus 28 ~~~~v~~~~~~~~a~~----~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~-~ 102 (140)
T 3lua_A 28 GEYDFIEVENLKKFYS----IFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALK-F 102 (140)
T ss_dssp CCCEEEEECSHHHHHT----TTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHH-S
T ss_pred cCccEEEECCHHHHHH----HHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHH-c
Confidence 4677776655444333 3344 5678888888888 7777777777665 34567777777543211 111 1
Q ss_pred CCCEEEEeCCCCCcchhhhHhHhhHhcCC
Q 004880 567 AADTCILYDSDWNPQMDLQAMDRCHRIGQ 595 (725)
Q Consensus 567 ~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ 595 (725)
+|+.+ +--|.++....+++.++.+-+.
T Consensus 103 g~~~~--l~KP~~~~~l~~~i~~~~~~~~ 129 (140)
T 3lua_A 103 KVSDY--ILKPYPTKRLENSVRSVLKICQ 129 (140)
T ss_dssp CCSEE--EESSCCTTHHHHHHHHHHCC--
T ss_pred CCCEE--EECCCCHHHHHHHHHHHHHhcc
Confidence 23333 3356788888888888776543
No 363
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=22.21 E-value=2.3e+02 Score=23.19 Aligned_cols=30 Identities=10% Similarity=0.288 Sum_probs=20.8
Q ss_pred CCcEEEEccchhHHHHHHHHHhhcCceEEE
Q 004880 496 NHKVLVFSQWTKILDIMEYYFNEKGYEVCR 525 (725)
Q Consensus 496 ~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~ 525 (725)
+.+++|..........+...|...|+.+..
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~ 36 (130)
T 3eod_A 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVL 36 (130)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCceEEE
Confidence 456777777777777777777777765543
No 364
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=22.20 E-value=2.3e+02 Score=28.08 Aligned_cols=87 Identities=15% Similarity=0.054 Sum_probs=58.2
Q ss_pred CCcEEEEccchhHHHHHHHHHhhcCc--eEEEEeCCCC--HHHHHHHHHHHhCCCCCceEEEEecccccCCCCCCCCCEE
Q 004880 496 NHKVLVFSQWTKILDIMEYYFNEKGY--EVCRIDGSVR--LDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTC 571 (725)
Q Consensus 496 ~~kvlIFsq~~~~ld~l~~~L~~~g~--~~~~l~G~~~--~~~R~~~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~~V 571 (725)
..++=++||+-.+...+.+++..+|+ .++.=.|... .-.=.+.++.|.+ |+..+++++-...+
T Consensus 144 ~G~va~vsqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~-D~~t~~I~l~~E~~------------ 210 (288)
T 1oi7_A 144 RGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNE-DPETEAVVLIGEIG------------ 210 (288)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSCCSSCHHHHHHHHHT-CTTCCEEEEEECSS------------
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEEeeCCCcCCCCCHHHHHHHHhc-CCCCCEEEEEEeeC------------
Confidence 35699999999998888888888754 5555566554 3356788999987 67777766554433
Q ss_pred EEeCCCCCcchhhhHhHhhHhcCCCCceEEEEE
Q 004880 572 ILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRL 604 (725)
Q Consensus 572 I~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrl 604 (725)
-|+..+.-+.-++ ..+|||.+|.-
T Consensus 211 ------~~~~~~~~~~~~~---~~~KPVv~~k~ 234 (288)
T 1oi7_A 211 ------GSDEEEAAAWVKD---HMKKPVVGFIG 234 (288)
T ss_dssp ------SSHHHHHHHHHHH---HCCSCEEEEES
T ss_pred ------CCHHHHHHHHHHh---cCCCCEEEEEe
Confidence 3555433333233 34799988774
No 365
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=21.95 E-value=1.1e+02 Score=34.52 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=45.3
Q ss_pred hcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEe
Q 004880 479 CGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRID 527 (725)
Q Consensus 479 s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~ 527 (725)
+||-..+..++..+...+.+|||-++....+|-|...|...+.+++|+-
T Consensus 216 TGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ilRlG 264 (646)
T 4b3f_X 216 TGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRLG 264 (646)
T ss_dssp SCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCEEECS
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCceEEec
Confidence 7899999999999999999999999999999999999988889998874
No 366
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=21.90 E-value=1.3e+02 Score=25.33 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=16.5
Q ss_pred CcEEEEccchhHHHHHHHHHhhc-Cce
Q 004880 497 HKVLVFSQWTKILDIMEYYFNEK-GYE 522 (725)
Q Consensus 497 ~kvlIFsq~~~~ld~l~~~L~~~-g~~ 522 (725)
-++||..........+...|... |+.
T Consensus 10 ~~iLivdd~~~~~~~l~~~L~~~~~~~ 36 (143)
T 2qv0_A 10 MKVIIVEDEFLAQQELSWLINTHSQME 36 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHSCCE
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCce
Confidence 45677766666666676666654 444
No 367
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=21.89 E-value=4.6e+02 Score=24.64 Aligned_cols=71 Identities=14% Similarity=0.136 Sum_probs=43.1
Q ss_pred CCcEEEEccchhHHHHHHHHHh----hcCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecc-cc-----cCCCCC
Q 004880 496 NHKVLVFSQWTKILDIMEYYFN----EKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTR-AG-----GLGINL 565 (725)
Q Consensus 496 ~~kvlIFsq~~~~ld~l~~~L~----~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~-ag-----g~GiNL 565 (725)
+.++||.+.....+..+.+.+. ..++.++.+.|+.+....... ... +..| +++|. .. ...+++
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~---~~~I-vv~Tp~~l~~~l~~~~~~~ 172 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE---VQM---GCHL-LVATPGRLVDFIEKNKISL 172 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH---HSS---CCSE-EEECHHHHHHHHHTTSBCC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---hCC---CCCE-EEECHHHHHHHHHcCCCCh
Confidence 3589999999877666555544 346788889998875443332 222 3345 55553 22 123566
Q ss_pred CCCCEEEE
Q 004880 566 TAADTCIL 573 (725)
Q Consensus 566 ~~a~~VI~ 573 (725)
...+.||+
T Consensus 173 ~~~~~lVi 180 (253)
T 1wrb_A 173 EFCKYIVL 180 (253)
T ss_dssp TTCCEEEE
T ss_pred hhCCEEEE
Confidence 67777665
No 368
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=21.63 E-value=2.2e+02 Score=25.45 Aligned_cols=64 Identities=14% Similarity=0.161 Sum_probs=36.4
Q ss_pred HHHHHhCCCCCCcEEEEcCccH-HHHHHHHHHhCCCceEEEEeCChh--hHHHHHHhcCCCCCCCCCCEEEec
Q 004880 195 LAHLKGNGLHGPYLVIAPLSTL-SNWVNEISRFVPSVSAIIYHGSKK--ERDEIRRKHMPRAIGPKFPIVVTS 264 (725)
Q Consensus 195 i~~l~~~~~~~~~LIV~P~sll-~~W~~E~~~~~p~~~v~~~~g~~~--~r~~~~~~~~~~~~~~~~~vvIts 264 (725)
+..+......+++||.|+..-. ......+... +..+..+||... .|....... ..+...|+|+|
T Consensus 25 L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~R~~~~~~f----~~g~~~vLvaT 91 (175)
T 2rb4_A 25 LCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD--GHQVSLLSGELTVEQRASIIQRF----RDGKEKVLITT 91 (175)
T ss_dssp HHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTT--TCCEEEECSSCCHHHHHHHHHHH----HTTSCSEEEEC
T ss_pred HHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHH----HcCCCeEEEEe
Confidence 3344444455789999996633 3344444443 567888888743 333322221 12456788877
No 369
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=21.57 E-value=35 Score=28.94 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=23.1
Q ss_pred CCcEEEEccchhHHHHHHHHHhhcC-ceEEEE
Q 004880 496 NHKVLVFSQWTKILDIMEYYFNEKG-YEVCRI 526 (725)
Q Consensus 496 ~~kvlIFsq~~~~ld~l~~~L~~~g-~~~~~l 526 (725)
..++||..........+...|...| +.+...
T Consensus 14 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~ 45 (135)
T 3snk_A 14 RKQVALFSSDPNFKRDVATRLDALAIYDVRVS 45 (135)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTSSEEEEEE
T ss_pred CcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEe
Confidence 3578888888888888888888777 766533
No 370
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=21.33 E-value=80 Score=26.11 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=30.9
Q ss_pred hCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCC
Q 004880 494 ARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVR 531 (725)
Q Consensus 494 ~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~ 531 (725)
..+..++|||..-.........|...|+.-..++|++.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 46788999998877677778888888986578899875
No 371
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=21.29 E-value=2.6e+02 Score=23.70 Aligned_cols=11 Identities=18% Similarity=0.326 Sum_probs=5.3
Q ss_pred ceEEEEeCCCC
Q 004880 521 YEVCRIDGSVR 531 (725)
Q Consensus 521 ~~~~~l~G~~~ 531 (725)
+.++.+|-.++
T Consensus 49 ~dlvi~D~~l~ 59 (151)
T 3kcn_A 49 FSVIMVDMRMP 59 (151)
T ss_dssp CSEEEEESCCS
T ss_pred CCEEEEeCCCC
Confidence 35555554443
No 372
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=21.07 E-value=2.6e+02 Score=25.31 Aligned_cols=37 Identities=5% Similarity=0.027 Sum_probs=16.1
Q ss_pred CceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEec
Q 004880 520 GYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLST 556 (725)
Q Consensus 520 g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst 556 (725)
.+.++.+|-.++...-.+++...+...+.+.|+++|.
T Consensus 48 ~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ls~ 84 (208)
T 1yio_A 48 QHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITA 84 (208)
T ss_dssp SCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeC
Confidence 4455555554443223334444433223444555543
No 373
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=20.89 E-value=57 Score=30.51 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=18.0
Q ss_pred CCCCcHHHHHHHHHHHHHhCC
Q 004880 182 QMGLGKTIQTIAFLAHLKGNG 202 (725)
Q Consensus 182 emGlGKT~qaiali~~l~~~~ 202 (725)
--|+|||.|+-.+..+|...|
T Consensus 8 ~DGsGKsTq~~~L~~~L~~~g 28 (197)
T 3hjn_A 8 IDGSGKSTQIQLLAQYLEKRG 28 (197)
T ss_dssp STTSSHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCC
Confidence 469999999998888888875
No 374
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=20.87 E-value=63 Score=29.41 Aligned_cols=33 Identities=24% Similarity=0.154 Sum_probs=23.8
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEE
Q 004880 176 NGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVI 210 (725)
Q Consensus 176 ~~ILademGlGKT~qaiali~~l~~~~~~~~~LIV 210 (725)
..+|.-.+|+|||.++-.+...+...+ +++.++
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~l~~~~--~~~~~~ 47 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADLLQKEG--YRVEVL 47 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcC--CeEEEe
Confidence 346778899999999888887776543 344444
No 375
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=20.86 E-value=3.4e+02 Score=25.41 Aligned_cols=89 Identities=13% Similarity=0.132 Sum_probs=45.7
Q ss_pred hcHHHH-HHHHHHHHhh--CCCcEEEEccchhHHHHHHHHHhh----cCceEEEEeCCCCHHHHHHHHHHHhCCCCCceE
Q 004880 479 CGKFRL-LDRLLARLFA--RNHKVLVFSQWTKILDIMEYYFNE----KGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRI 551 (725)
Q Consensus 479 s~K~~~-L~~ll~~l~~--~~~kvlIFsq~~~~ld~l~~~L~~----~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v 551 (725)
|||-.. +.-++..+.. .+.++||.+........+.+.+.. .++.+..+.|+.+.... ...+.. ....|
T Consensus 78 sGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~--~~~~I 152 (237)
T 3bor_A 78 TGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE---MQKLQA--EAPHI 152 (237)
T ss_dssp HHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC------------------CCCSE
T ss_pred CcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH---HHHHhc--CCCCE
Confidence 677754 3344444332 456899999988877666665544 36788888887764332 222332 22344
Q ss_pred EEEecc-----ccc-CCCCCCCCCEEEE
Q 004880 552 FLLSTR-----AGG-LGINLTAADTCIL 573 (725)
Q Consensus 552 ~Llst~-----agg-~GiNL~~a~~VI~ 573 (725)
+++|. ... ..+++...+.||+
T Consensus 153 -lv~Tp~~l~~~l~~~~~~~~~~~~lVi 179 (237)
T 3bor_A 153 -VVGTPGRVFDMLNRRYLSPKWIKMFVL 179 (237)
T ss_dssp -EEECHHHHHHHHHTTSSCSTTCCEEEE
T ss_pred -EEECHHHHHHHHHhCCcCcccCcEEEE
Confidence 55552 222 2356666776665
No 376
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=20.70 E-value=75 Score=27.83 Aligned_cols=38 Identities=13% Similarity=0.334 Sum_probs=30.7
Q ss_pred hCCCcEEEEccchhHHHHHHHHHhhcCce-EEEEeCCCC
Q 004880 494 ARNHKVLVFSQWTKILDIMEYYFNEKGYE-VCRIDGSVR 531 (725)
Q Consensus 494 ~~~~kvlIFsq~~~~ld~l~~~L~~~g~~-~~~l~G~~~ 531 (725)
..+..++|||..-.........|...|+. +..++|++.
T Consensus 54 ~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 54 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp CTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 45778999999877777788888889995 778888855
No 377
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=20.62 E-value=84 Score=28.58 Aligned_cols=26 Identities=15% Similarity=0.052 Sum_probs=20.0
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHH
Q 004880 173 NGLNGILADQMGLGKTIQTIAFLAHL 198 (725)
Q Consensus 173 ~~~~~ILademGlGKT~qaiali~~l 198 (725)
.+...+|.-.+|+|||.++-.+...+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35556788899999998887776654
No 378
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=20.60 E-value=1.2e+02 Score=26.08 Aligned_cols=25 Identities=12% Similarity=0.042 Sum_probs=13.1
Q ss_pred CCcEEEEccchhHHHHHHHHHhhcC
Q 004880 496 NHKVLVFSQWTKILDIMEYYFNEKG 520 (725)
Q Consensus 496 ~~kvlIFsq~~~~ld~l~~~L~~~g 520 (725)
+.+|||..........+...|...|
T Consensus 15 ~~~iLivdd~~~~~~~l~~~L~~~~ 39 (152)
T 3eul_A 15 KVRVVVGDDHPLFREGVVRALSLSG 39 (152)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHS
T ss_pred eEEEEEEcCCHHHHHHHHHHHhhCC
Confidence 3455555555555555555555444
No 379
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=20.36 E-value=92 Score=33.32 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=20.3
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 004880 174 GLNGILADQMGLGKTIQTIAFLAHL 198 (725)
Q Consensus 174 ~~~~ILademGlGKT~qaiali~~l 198 (725)
..+.+|.-.+|+|||..+-+++..+
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4678999999999998887776654
No 380
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=20.36 E-value=99 Score=26.55 Aligned_cols=71 Identities=6% Similarity=0.087 Sum_probs=31.2
Q ss_pred cCceEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEEecccccC----CCCCCCCCEEEEeCCCCCcchhhhHhHhhHh
Q 004880 519 KGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGL----GINLTAADTCILYDSDWNPQMDLQAMDRCHR 592 (725)
Q Consensus 519 ~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~----GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~R 592 (725)
..+.++.+|-.++...-.+++...+...+.+.|++++...-.. .+. .+|+.+| .-|+++....+++.++.+
T Consensus 65 ~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~-~g~~~~l--~Kp~~~~~l~~~i~~~~~ 139 (150)
T 4e7p_A 65 ESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAVK-AGVDAYV--LKERSIADLMQTLHTVLE 139 (150)
T ss_dssp SCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHH-TTCSEEE--ETTSCHHHHHHHHHHHHT
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHH-CCCcEEE--ecCCCHHHHHHHHHHHHc
Confidence 3455666665544333344444444333445555555432210 001 1122222 235566666666655554
No 381
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=20.31 E-value=3.1e+02 Score=27.28 Aligned_cols=88 Identities=17% Similarity=0.109 Sum_probs=58.4
Q ss_pred CCcEEEEccchhHHHHHHHHHhhc--CceEEEEeCCCC--HHHHHHHHHHHhCCCCCceEEEEecccccCCCCCCCCCEE
Q 004880 496 NHKVLVFSQWTKILDIMEYYFNEK--GYEVCRIDGSVR--LDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTC 571 (725)
Q Consensus 496 ~~kvlIFsq~~~~ld~l~~~L~~~--g~~~~~l~G~~~--~~~R~~~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~~V 571 (725)
..+|=++||+-.+...+.+++..+ |+.++.=-|... .-.=.+.++.|.+ |+..+++++-...+
T Consensus 151 ~G~va~vSqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~-D~~T~~I~l~~E~~------------ 217 (297)
T 2yv2_A 151 EGGVAVVSRSGTLTYEISYMLTRQGIGQSTVIGIGGDPIVGLSFTEALKLFQE-DPQTEALVLIGEIG------------ 217 (297)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHT-CTTCSEEEEEECSS------------
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCeeEEEeeCCCcCCCCCHHHHHHHHhc-CCCCCEEEEEEeeC------------
Confidence 356999999999888888888776 445555566655 2356788999987 67777766554433
Q ss_pred EEeCCCCCcchhhhHhHhhHhcCCCCceEEEEE
Q 004880 572 ILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRL 604 (725)
Q Consensus 572 I~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrl 604 (725)
-|+..+.-+.-|+ ...+|||.+|.-
T Consensus 218 ------~~~~~~~~~~~~~--~~~~KPVv~~k~ 242 (297)
T 2yv2_A 218 ------GDMEERAAEMIKK--GEFTKPVIAYIA 242 (297)
T ss_dssp ------SSHHHHHHHHHHT--TSCCSCEEEEES
T ss_pred ------CCHHHHHHHHHHh--ccCCCCEEEEEe
Confidence 3554333333232 245799988774
No 382
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.27 E-value=1.6e+02 Score=24.40 Aligned_cols=46 Identities=11% Similarity=0.166 Sum_probs=34.7
Q ss_pred CcEEEEccc-hhHHH------HHHHHHhhcCceEEEEeCCCCHHHHHHHHHHH
Q 004880 497 HKVLVFSQW-TKILD------IMEYYFNEKGYEVCRIDGSVRLDERKRQIQDF 542 (725)
Q Consensus 497 ~kvlIFsq~-~~~ld------~l~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F 542 (725)
.+|+||+.. ..... .+..+|..+|++|..++=......|.++.+.+
T Consensus 8 m~V~vy~~~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~~~ 60 (111)
T 2ct6_A 8 MVIRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNV 60 (111)
T ss_dssp CCEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTTCHHHHHHHHHSC
T ss_pred cEEEEEEcCCCCCcccchhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHh
Confidence 468888532 23344 68888999999999999988877787777765
No 383
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=20.23 E-value=3.2e+02 Score=29.64 Aligned_cols=31 Identities=13% Similarity=0.234 Sum_probs=22.0
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCcEEE
Q 004880 178 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVI 210 (725)
Q Consensus 178 ILademGlGKT~qaiali~~l~~~~~~~~~LIV 210 (725)
.|.-..|+|||..+-.++..+... .|.++|+
T Consensus 297 ~LVGpNGSGKTTLl~~LAgll~~~--~G~V~l~ 327 (503)
T 2yhs_A 297 LMVGVNGVGKTTTIGKLARQFEQQ--GKSVMLA 327 (503)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHT--TCCEEEE
T ss_pred EEECCCcccHHHHHHHHHHHhhhc--CCeEEEe
Confidence 466779999998876666655544 3677776
No 384
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=20.15 E-value=72 Score=27.75 Aligned_cols=38 Identities=16% Similarity=0.304 Sum_probs=31.1
Q ss_pred hCCCcEEEEccchhHHHHHHHHHhhcCc-eEEEEeCCCC
Q 004880 494 ARNHKVLVFSQWTKILDIMEYYFNEKGY-EVCRIDGSVR 531 (725)
Q Consensus 494 ~~~~kvlIFsq~~~~ld~l~~~L~~~g~-~~~~l~G~~~ 531 (725)
..+..++|||..-.........|...|+ ++..++|++.
T Consensus 80 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 80 DPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp CTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 4578899999887666777888888999 5889999975
No 385
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=20.13 E-value=2.7e+02 Score=27.63 Aligned_cols=87 Identities=17% Similarity=0.139 Sum_probs=58.9
Q ss_pred CCcEEEEccchhHHHHHHHHHhhcCc--eEEEEeCCCC--HHHHHHHHHHHhCCCCCceEEEEecccccCCCCCCCCCEE
Q 004880 496 NHKVLVFSQWTKILDIMEYYFNEKGY--EVCRIDGSVR--LDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTC 571 (725)
Q Consensus 496 ~~kvlIFsq~~~~ld~l~~~L~~~g~--~~~~l~G~~~--~~~R~~~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~~V 571 (725)
..++=++||+-.+...+..++..+|+ .++.=.|+.. .-.-.+.++.|.+ |+..+++++-...+|
T Consensus 144 ~G~i~~vsqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~l~~-D~~t~~I~l~~E~~~----------- 211 (288)
T 2nu8_A 144 PGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEK-DPQTEAIVMIGEIGG----------- 211 (288)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHT-CTTCCEEEEEEESSS-----------
T ss_pred CCCEEEEECcHHHHHHHHHHHHhcCCCEEEEEeeCCCcCCCCCHHHHHHHHhc-CCCCCEEEEEEeeCC-----------
Confidence 35688999998888888888887755 5555556544 2456788888987 677777666554443
Q ss_pred EEeCCCCCcchhhhHhHhhHhcCCCCceEEEEE
Q 004880 572 ILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRL 604 (725)
Q Consensus 572 I~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrl 604 (725)
|+..+..+.-++ ..+|||.+|.-
T Consensus 212 -------~~~~~~~~~~~~---~~~KPVv~~k~ 234 (288)
T 2nu8_A 212 -------SAEEEAAAYIKE---HVTKPVVGYIA 234 (288)
T ss_dssp -------SHHHHHHHHHHH---HCCSCEEEEEE
T ss_pred -------CHHHHHHHHHHh---cCCCCEEEEEe
Confidence 555444444444 34799999875
No 386
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=20.09 E-value=70 Score=30.09 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=19.2
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 004880 174 GLNGILADQMGLGKTIQTIAFLAHL 198 (725)
Q Consensus 174 ~~~~ILademGlGKT~qaiali~~l 198 (725)
+...+|.-.+|+|||.++-.+...+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3456788889999999887776654
Done!