Query 004881
Match_columns 725
No_of_seqs 210 out of 291
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 14:28:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004881.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004881hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2256 Predicted protein invo 100.0 7E-155 2E-159 1286.1 52.9 554 132-692 66-636 (661)
2 COG5604 Uncharacterized conser 100.0 4E-101 9E-106 814.9 29.6 426 193-668 92-522 (523)
3 PF03715 Noc2: Noc2p family; 100.0 1E-100 3E-105 812.5 29.5 296 373-669 1-299 (299)
4 PF04147 Nop14: Nop14-like fam 99.1 4.1E-08 8.9E-13 118.5 28.9 238 375-649 513-758 (840)
5 KOG2147 Nucleolar protein invo 97.6 0.0059 1.3E-07 71.7 20.9 168 456-628 534-708 (823)
6 PF04147 Nop14: Nop14-like fam 97.5 0.0034 7.3E-08 76.7 19.3 274 198-514 426-715 (840)
7 KOG2256 Predicted protein invo 96.8 0.046 9.9E-07 64.0 16.9 32 132-164 87-118 (661)
8 PF04931 DNA_pol_phi: DNA poly 92.8 0.14 3E-06 62.5 5.4 16 212-227 761-776 (784)
9 PF03224 V-ATPase_H_N: V-ATPas 92.0 4.2 9E-05 44.1 15.2 187 295-492 51-254 (312)
10 KOG1832 HIV-1 Vpr-binding prot 91.3 0.088 1.9E-06 63.2 1.4 11 143-153 1466-1476(1516)
11 cd00256 VATPase_H VATPase_H, r 88.5 23 0.0005 40.7 17.6 152 298-467 52-217 (429)
12 KOG2141 Protein involved in hi 87.7 75 0.0016 38.7 21.6 55 380-434 483-541 (822)
13 KOG0212 Uncharacterized conser 84.8 15 0.00032 43.3 13.5 94 339-435 335-446 (675)
14 PF03378 CAS_CSE1: CAS/CSE pro 82.4 12 0.00027 42.9 11.8 213 373-601 21-253 (435)
15 PF10446 DUF2457: Protein of u 79.6 3 6.6E-05 47.4 5.5 7 16-22 28-34 (458)
16 KOG2147 Nucleolar protein invo 76.8 65 0.0014 39.3 15.3 38 348-385 522-561 (823)
17 KOG2759 Vacuolar H+-ATPase V1 76.5 16 0.00035 41.6 10.0 155 299-466 65-229 (442)
18 PF01602 Adaptin_N: Adaptin N 67.2 20 0.00043 40.9 8.5 110 312-439 91-201 (526)
19 KOG1992 Nuclear export recepto 67.2 1.1E+02 0.0025 37.8 14.6 181 327-527 480-686 (960)
20 PF01602 Adaptin_N: Adaptin N 66.7 1.2E+02 0.0025 34.7 14.5 155 330-516 141-298 (526)
21 PF12755 Vac14_Fab1_bd: Vacuol 66.0 41 0.0009 30.7 8.6 63 334-397 21-83 (97)
22 KOG2038 CAATT-binding transcri 64.3 9.6 0.00021 46.2 5.1 8 71-78 857-864 (988)
23 KOG2141 Protein involved in hi 62.3 2.3E+02 0.005 34.8 15.7 77 260-354 297-375 (822)
24 KOG1248 Uncharacterized conser 59.3 5.1E+02 0.011 33.6 21.2 245 209-469 105-377 (1176)
25 KOG0262 RNA polymerase I, larg 58.2 30 0.00064 44.2 7.9 73 335-434 1532-1604(1640)
26 COG5101 CRM1 Importin beta-rel 57.7 1.5E+02 0.0032 36.1 12.9 184 306-506 199-415 (1053)
27 KOG2393 Transcription initiati 55.5 18 0.0004 42.2 5.3 15 59-73 228-242 (555)
28 KOG3241 Uncharacterized conser 53.7 20 0.00043 36.5 4.5 15 59-73 160-174 (227)
29 KOG0212 Uncharacterized conser 52.9 81 0.0018 37.5 9.8 67 304-374 379-449 (675)
30 KOG2153 Protein involved in th 52.3 5.2E+02 0.011 31.6 21.1 71 297-371 277-355 (704)
31 PF05918 API5: Apoptosis inhib 51.6 33 0.00071 40.7 6.7 93 327-429 46-140 (556)
32 KOG3871 Cell adhesion complex 46.3 22 0.00047 39.8 3.9 28 1-28 1-29 (449)
33 COG4547 CobT Cobalamin biosynt 46.1 16 0.00034 42.1 2.8 13 63-75 213-225 (620)
34 smart00543 MIF4G Middle domain 46.0 2.4E+02 0.0052 27.5 11.0 122 304-432 4-125 (200)
35 PF08167 RIX1: rRNA processing 45.8 1.3E+02 0.0028 29.8 9.0 84 290-375 58-149 (165)
36 KOG3165 Predicted nucleic-acid 43.6 20 0.00043 36.0 2.8 26 1-28 1-27 (195)
37 COG5095 TAF6 Transcription ini 42.3 3.1E+02 0.0067 30.6 11.6 117 294-441 192-316 (450)
38 PF11698 V-ATPase_H_C: V-ATPas 41.3 84 0.0018 30.1 6.5 67 303-369 47-115 (119)
39 PF12074 DUF3554: Domain of un 41.1 5.1E+02 0.011 28.3 14.0 210 300-531 23-250 (339)
40 KOG2038 CAATT-binding transcri 39.9 4.1E+02 0.0088 33.1 13.1 118 292-410 416-566 (988)
41 KOG1020 Sister chromatid cohes 38.8 5.4E+02 0.012 34.5 14.5 239 328-580 616-884 (1692)
42 PHA02734 coat protein; Provisi 37.8 1.1E+02 0.0025 29.4 6.7 66 564-633 8-73 (149)
43 KOG2011 Sister chromatid cohes 37.7 4.1E+02 0.009 34.1 13.2 35 193-228 91-125 (1048)
44 PF02854 MIF4G: MIF4G domain; 35.5 3.8E+02 0.0081 26.0 10.5 109 304-417 4-118 (209)
45 PF02724 CDC45: CDC45-like pro 33.9 50 0.0011 39.7 4.7 14 220-233 221-234 (622)
46 PF13251 DUF4042: Domain of un 33.8 2.9E+02 0.0063 28.2 9.5 82 290-371 92-176 (182)
47 KOG1241 Karyopherin (importin) 32.3 2.6E+02 0.0057 34.5 10.0 98 312-410 186-288 (859)
48 KOG0943 Predicted ubiquitin-pr 31.0 30 0.00064 44.1 2.1 65 77-187 1729-1793(3015)
49 KOG2171 Karyopherin (importin) 30.7 4.4E+02 0.0094 34.0 11.9 336 288-667 195-587 (1075)
50 COG5117 NOC3 Protein involved 30.1 8.9E+02 0.019 28.6 13.2 31 288-318 211-241 (657)
51 KOG1058 Vesicle coat complex C 29.9 5.7E+02 0.012 31.9 12.2 277 302-631 117-447 (948)
52 PF12830 Nipped-B_C: Sister ch 29.1 3.7E+02 0.0081 27.0 9.4 90 294-387 3-92 (187)
53 PF04826 Arm_2: Armadillo-like 28.2 2.2E+02 0.0049 30.4 8.0 75 294-369 88-163 (254)
54 PHA02458 A protein A*; Reviewe 27.9 1.2E+02 0.0027 32.2 5.7 49 374-424 200-250 (341)
55 PF03672 UPF0154: Uncharacteri 27.7 1.2E+02 0.0026 26.1 4.6 32 194-225 31-62 (64)
56 PTZ00415 transmission-blocking 27.3 46 0.001 44.0 2.9 16 63-78 142-157 (2849)
57 PF12717 Cnd1: non-SMC mitotic 26.9 6.3E+02 0.014 25.0 11.1 97 330-434 15-113 (178)
58 KOG1062 Vesicle coat complex A 26.4 5.7E+02 0.012 31.9 11.5 155 266-441 60-234 (866)
59 KOG1163 Casein kinase (serine/ 25.6 91 0.002 33.8 4.3 57 364-456 245-301 (341)
60 PTZ00479 RAP Superfamily; Prov 24.7 1.2E+03 0.025 27.3 13.0 194 294-531 115-325 (435)
61 cd05137 RasGAP_CLA2_BUD2 CLA2/ 23.8 6.9E+02 0.015 28.6 11.2 37 335-371 224-263 (395)
62 KOG3064 RNA-binding nuclear pr 23.6 49 0.0011 35.6 1.9 17 129-145 257-273 (303)
63 cd00020 ARM Armadillo/beta-cat 23.4 2.7E+02 0.0059 24.2 6.5 64 304-368 54-119 (120)
64 PF04889 Cwf_Cwc_15: Cwf15/Cwc 23.0 77 0.0017 33.8 3.3 12 132-143 149-160 (244)
65 COG3296 Uncharacterized protei 22.9 23 0.00051 34.2 -0.5 32 475-506 110-142 (143)
66 PTZ00429 beta-adaptin; Provisi 22.5 1.6E+03 0.034 28.1 16.5 199 297-530 254-483 (746)
67 PF08559 Cut8_C: Cut8 six-heli 21.7 7.7E+02 0.017 24.2 9.8 91 257-367 8-101 (143)
68 KOG0526 Nucleosome-binding fac 21.1 54 0.0012 38.5 1.8 11 214-224 534-544 (615)
69 cd00020 ARM Armadillo/beta-cat 21.1 4E+02 0.0086 23.1 7.1 32 340-371 49-80 (120)
70 PF07165 DUF1397: Protein of u 20.9 9.6E+02 0.021 25.0 15.8 57 373-430 141-209 (213)
71 PRK00011 glyA serine hydroxyme 20.2 48 0.001 36.9 1.1 28 138-165 3-33 (416)
No 1
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7e-155 Score=1286.06 Aligned_cols=554 Identities=38% Similarity=0.617 Sum_probs=511.2
Q ss_pred HHHHHHHHHhhcCChhhhHhhhhhCccccCCCCCCCCCcccccccc---cc-CCCCCCC----------CCcccCCcccH
Q 004881 132 ENKKKKLSRLKAKDPGFSKFLESHDKGLKSFRNENAYSDEDERSDD---GM-QSMDEDG----------PHLYLNKLLTS 197 (725)
Q Consensus 132 ~~hk~~L~~LkekDPEFyKyL~enD~eLL~F~~~~~~~d~de~~~d---e~-~~~~~~~----------~~~~~~~~lT~ 197 (725)
..|+++|++|+++||+||+||++||++||+|++ |+++|++.|++| ++ .++++|. .+...+++||.
T Consensus 66 ~~hk~~l~~l~~~Dp~f~~~~~~~dk~ll~~~~-D~d~d~~lE~~d~Dled~~~d~~d~~~~~~~~~~~~~~~~~k~it~ 144 (661)
T KOG2256|consen 66 SKHKKELEKLKDKDPEFFKFLKEEDKELLNFKE-DSDDDEDLEEPDEDLEDFSEDEEDDEEDEIDKETDKKKNSGKVITV 144 (661)
T ss_pred hhHHHHhhhccccCcHHHHHHHhhhHHHhCCCC-CccchhhccCCcccccccccccchhhhhhcccchhhhhcccchhhH
Confidence 789999999999999999999999999999996 444333322211 11 0111111 01124568999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHhhhcccCCCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHhCCcCCCC
Q 004881 198 SAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLDCETFCKILMFVLREADDVFREMLGISSNCK 277 (725)
Q Consensus 198 ~~v~~W~~~l~~~~sl~alr~lv~AFRaA~~~~~e~~~~~~~~~ky~I~ds~VFn~vv~~~L~~lp~~l~~~l~~k~~~~ 277 (725)
.+|.+|++++...+++..+|++|+||||||+++.+++ .++.+|.|+|+++||+||.+||+++|.+|+++|+++..++
T Consensus 145 ~~V~~w~~~l~~~~~~~~~r~vv~af~aAva~~~~~~---~e~~ky~i~ds~~Fn~vv~~~lq~~~~~l~~ll~~k~~~~ 221 (661)
T KOG2256|consen 145 SNVYSWKQQLEQETSLTLVRRVVQAFRAAVAYGGEDS---AEAPKYVITDSEAFNAVVIFCLQEMPDILRKLLRGKVDKD 221 (661)
T ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHHHHHhccccc---ccccceeechHHHHHHHHHHHHHHhHHHHHHHcCCCcCCC
Confidence 9999999999999999999999999999999998762 2578999999999999999999999999999999988654
Q ss_pred CccccccCCCCcchhhhHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhH
Q 004881 278 RDTILGLKNNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVS 357 (725)
Q Consensus 278 k~~~~~~~~~~kw~kl~~liKsyl~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWst~~e~vr 357 (725)
+.... ....+|.++++++|||++++++||+++|++++++++|++++.++||+++||+++|.|+|++|++||||++++|
T Consensus 222 ~~~~~--~~~~~w~k~~~~vKsYl~s~l~Ll~~~t~te~~~~~L~~l~~l~~~~~~f~k~lk~liK~~V~vWstge~~~r 299 (661)
T KOG2256|consen 222 KSLFL--KTASKWYKLRVLVKSYLGSSLHLLNQLTDTEVLAFTLRHLTVLVPFLATFPKLLKKLIKAVVHVWSTGEESLR 299 (661)
T ss_pred ccccc--cccccchhhhHHHHHHhHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHheeeccCCcchh
Confidence 44442 3334499999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHHhhccccCccchhhhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHH
Q 004881 358 FHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQL 437 (725)
Q Consensus 358 v~AFl~Lr~l~~~~~~~~le~~LK~~Y~ayv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yIRQLAIhLRn 437 (725)
+.||+||+++|+.+.+.+++.|||+||.+||+||++|+++|||+||||+||++||||+|+..+|||||+|||||||||||
T Consensus 300 v~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~nsk~~~~~tl~~i~Fl~~slvEL~~ld~~~~Yq~aF~yIrQLAihLRn 379 (661)
T KOG2256|consen 300 VLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRNSKFVTVNTLPLINFLQNSLVELLGLDLQVSYQHAFVYIRQLAIHLRN 379 (661)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhcccchhHhHHHHHHHHHc-ccCCCCCccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHhcc
Q 004881 438 GLQTKKKEAVKKICSWQYANCIDLWVTYIS-HCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSS 516 (725)
Q Consensus 438 ai~~k~Kea~k~VYNWQfvhsL~~Ws~VLs-~~~~~s~L~pLiYPLVQVi~G~irLiPt~ryfPLRfh~ir~L~~Ls~~t 516 (725)
||++++|++++.||||||||||+||++||| ++..+|+|+||+|||||||+||||||||+|||||||||||+|++||++|
T Consensus 380 am~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~~s~lq~LvYpLvQvi~GvirLipT~qy~PLRlhcir~Li~Ls~ss 459 (661)
T KOG2256|consen 380 AMITKNKESVQSVYNWQYVHCLDLWLRVISFANGSASQLQPLVYPLVQVILGVIRLIPTPQYYPLRLHCIRSLISLSRSS 459 (661)
T ss_pred HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccHhhhhhhhhHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999 8888899999999999999999999999999999999999999999999
Q ss_pred CcceechhHHHHhhcccccc--CCCCCCCCCCcccccccchhhhcchhhHHHHHHHHHHHHHHHHHHhhcCCccccchhH
Q 004881 517 GIFIPVTSLMLDVLEYKVSK--EVGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATI 594 (725)
Q Consensus 517 ~~fIPl~p~LleiL~s~~~K--~~~~~~k~~Df~~~lk~~k~~l~t~~~qd~v~~~~~eLL~e~l~~~s~sIaFPEl~~p 594 (725)
|+||||+|+|+|||.+...+ +++.+++|+||.++||||+.||+|+.||++|++++++||+|||++||+|||||||++|
T Consensus 460 g~fIPi~~ll~Eml~~~~~nrkp~~~~~k~~D~~~~Lk~sk~~L~sk~yq~~~ieqv~~lL~ey~a~~s~~IaFPELv~p 539 (661)
T KOG2256|consen 460 GTFIPLSPLLVEMLKSVTFNRKPKASSVKPIDFDSTLKLSKRYLRSKAYQDGVIEQVIELLLEYFALFSKSIAFPELVLP 539 (661)
T ss_pred CceeecHHHHHHHHHHhhccCCccccccCCCCeeEEeecCHHHhccHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhHH
Confidence 99999999999999998754 3455679999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhcchHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCCCHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHH
Q 004881 595 PLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTPFTQYYRSVMEKAAS 674 (725)
Q Consensus 595 ~i~~LKr~~K~~k~~~~~~~lk~Li~kie~n~~~I~~kR~~v~F~P~d~~~V~~Fl~~~~~~~~tPL~~y~~~~~~~~~~ 674 (725)
+|++||+|+|.|++++|++.+++|+++|++|++||+++|..|+|+|+|.++|++|+++ ..|.+||||+||.+|++++++
T Consensus 540 ~i~rLk~f~k~skn~~~~r~v~~li~kle~ns~FV~~kR~~v~F~pnD~~~V~afe~~-~~~~~TPl~~yy~~~rk~~~~ 618 (661)
T KOG2256|consen 540 VIMRLKSFLKESKNGNYKRVVKQLIEKLEENSKFVLEKRNKVKFSPNDQQAVSAFEQD-LDWNKTPLGQYYSSWRKVREE 618 (661)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCcHHHHHHHHHH-HHccCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999995 679999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHH
Q 004881 675 RSLIMNENKSFLEQKKQK 692 (725)
Q Consensus 675 r~~~~~~~~~~~~~~~~~ 692 (725)
++++++|+.++.++++++
T Consensus 619 k~r~~~e~~~~~d~~~~~ 636 (661)
T KOG2256|consen 619 KNRLAVESSEEDDKDKPK 636 (661)
T ss_pred HHHHHhhhhhhhhhhhhh
Confidence 999999999998776655
No 2
>COG5604 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.9e-101 Score=814.95 Aligned_cols=426 Identities=24% Similarity=0.326 Sum_probs=391.8
Q ss_pred CcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhhcccCCCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 004881 193 KLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLDCETFCKILMFVLREADDVFREMLGI 272 (725)
Q Consensus 193 ~~lT~~~v~~W~~~l~~~~sl~alr~lv~AFRaA~~~~~e~~~~~~~~~ky~I~ds~VFn~vv~~~L~~lp~~l~~~l~~ 272 (725)
..||...+++|++.+...+|+..+++++.||++|+..+.++ .+.+|+|+|.++|+.++.+++.++|.++..|.|+
T Consensus 92 i~L~~~~~qkw~k~l~~~~sl~~lqk~~~afkaaa~ln~eE-----eDlKyti~d~k~f~~l~~l~~~~vp~a~~~~~p~ 166 (523)
T COG5604 92 ISLNQVSTQKWRKELDLLASLAYLQKLSGAFKAAALLNNEE-----EDLKYTIDDVKFFARLKILQDLRVPYAEILLTPF 166 (523)
T ss_pred eeeeHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhH-----HHHHhhhhHHHHHHHHHHHHHhhhhHHHHHhchh
Confidence 46999999999999999999999999999999999998875 4689999999999999999999999999999999
Q ss_pred cCCCCCccccccCCCCcchhhhHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCC
Q 004881 273 SSNCKRDTILGLKNNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATG 352 (725)
Q Consensus 273 k~~~~k~~~~~~~~~~kw~kl~~liKsyl~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWst~ 352 (725)
.+.+|. ..+++..+.-++++.+|+|-+++++||+.+||.+.+++.|+...+++ |+ ++.
T Consensus 167 ~~~KG~---~~l~s~~~v~~i~~~~Ks~~gsvl~Lln~~tn~~~a~l~l~~a~n~i----~~-------i~s-------- 224 (523)
T COG5604 167 FEKKGY---QNLSSALDVIHIKKFSKSPNGSVLQLLNIFTNHSKARLDLQKAVNHI----CK-------IDS-------- 224 (523)
T ss_pred Hhhccc---cccCCCcCeEeeeehhcCCCchHHHHHHHhccchHHHHHHHHHHHHH----HH-------Hhh--------
Confidence 765553 33455555569999999999999999999999999999999988874 21 111
Q ss_pred CchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhhccccCccchhhhHHHHHHHHHHhcCCccchhHHHHHHHHHHH
Q 004881 353 EETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLS 432 (725)
Q Consensus 353 ~e~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~ayv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yIRQLA 432 (725)
++++++|.+++..+..+.. |..|+++++|.|||++|+++|||+||....|++||.||||||
T Consensus 225 --t~~~a~f~~l~s~~l~f~k-----------------s~~t~v~~~d~in~lqnsa~nl~~Lde~~~~ki~f~yi~qLa 285 (523)
T COG5604 225 --TLSVAVFQVLYSPLLDFFK-----------------SSPTEVNDFDTINFLQNSAKNLFELDESYLYKIGFSYIRQLA 285 (523)
T ss_pred --hheehhHHHHHHHHHHHhh-----------------cCccccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 4999999999998776533 999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhhhcccchhHhHHHHHHHHHcccC---CCCCccchHHHHHHHHhhhhcccCCCcccchHHHHHHHH
Q 004881 433 RILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCI---HDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWL 509 (725)
Q Consensus 433 IhLRnai~~k~Kea~k~VYNWQfvhsL~~Ws~VLs~~~---~~s~L~pLiYPLVQVi~G~irLiPt~ryfPLRfh~ir~L 509 (725)
|||||+|...++.+-+.|||||||||||||.+||+..| -+|.++.|+||+||+++|+||||||.|||||||||||+|
T Consensus 286 ~hLkn~v~~p~k~drk~Vynwqyv~Sldfwlrvisfa~wng~eS~~~~l~~~lvq~Tl~vIrlipT~Q~yplrfhllrSL 365 (523)
T COG5604 286 IHLKNTVLNPRKVDRKMVYNWQYVHSLDFWLRVISFAVWNGIESKLLRLHYPLVQYTLGVIRLIPTYQDYPLRFHLLRSL 365 (523)
T ss_pred HHHHHHhcCccchhhHHHhhHHHhhhcchHHHHHHHHHHhhhhhHHHHhhhHHHHHHhhheeecCcccccchhHHHHHHH
Confidence 99999999888888788999999999999999999744 478999999999999999999999999999999999999
Q ss_pred HHHHhccCcceechhHHHHhhccccc-cC-CCCCCCCCCcccccccchhhhcchhhHHHHHHHHHHHHHHHHHHhhcCCc
Q 004881 510 NHLSSSSGIFIPVTSLMLDVLEYKVS-KE-VGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHIS 587 (725)
Q Consensus 510 ~~Ls~~t~~fIPl~p~LleiL~s~~~-K~-~~~~~k~~Df~~~lk~~k~~l~t~~~qd~v~~~~~eLL~e~l~~~s~sIa 587 (725)
++|+++||+||||+|+|+|||.+... |. +...+++|||+++||++++||+|+.||++|++|+++||+|||++||++||
T Consensus 366 Irl~r~s~vyIPLs~~l~eiL~s~~~~k~p~as~l~~fDfd~~lk~~~e~Lrsk~yq~~viee~~~lL~eyfalfsknIa 445 (523)
T COG5604 366 IRLSRGSGVYIPLSPYLVEILKSAISVKNPKASVLRKFDFDSMLKPDTEYLRSKEYQMGVIEEASSLLLEYFALFSKNIA 445 (523)
T ss_pred HHHHhcCceEEeccHHHHHHHHHHHHhcCchhhhccccCchhhcCCCHHHHhHHHHHhhHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999998763 33 33459999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCCCHHHHHHHHHhhhcCCCCchHHHHHH
Q 004881 588 FPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTPFTQYYRS 667 (725)
Q Consensus 588 FPEl~~p~i~~LKr~~K~~k~~~~~~~lk~Li~kie~n~~~I~~kR~~v~F~P~d~~~V~~Fl~~~~~~~~tPL~~y~~~ 667 (725)
||||+.|+|++|||+.+.+ ++++.+-+++.+|+++++||++||.+|.|+|.|..+|++|+++ .+|..||||+|+..
T Consensus 446 FPELv~pvI~~lkrl~k~s---k~nk~vlt~vnkLeqq~kfv~eKRn~vkfs~iD~s~Vs~Fe~d-idw~~TpLG~yV~~ 521 (523)
T COG5604 446 FPELVGPVISELKRLRKGS---KLNKVVLTMVNKLEQQSKFVLEKRNKVKFSPIDGSTVSSFESD-IDWRSTPLGQYVSD 521 (523)
T ss_pred chhHhHHHHHHHHHHHhcc---chhhHHHHHHHHHhhhhHHHHHHhhcCccCCCChHHHHHHHHh-hhhccCCccceeec
Confidence 9999999999999999887 6789999999999999999999999999999999999999994 79999999999976
Q ss_pred H
Q 004881 668 V 668 (725)
Q Consensus 668 ~ 668 (725)
+
T Consensus 522 q 522 (523)
T COG5604 522 Q 522 (523)
T ss_pred c
Confidence 5
No 3
>PF03715 Noc2: Noc2p family; InterPro: IPR005343 This is a small family of mainly hypothetical proteins of unknown function.
Probab=100.00 E-value=1.3e-100 Score=812.49 Aligned_cols=296 Identities=37% Similarity=0.647 Sum_probs=287.5
Q ss_pred cchHHHHHHHHHHHHHhhccccCccchhhhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 004881 373 SDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICS 452 (725)
Q Consensus 373 ~~~le~~LK~~Y~ayv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yIRQLAIhLRnai~~k~Kea~k~VYN 452 (725)
++++|.|||+||.+||+|||+||++|+|+||||+||++|||++|++++|||||+|||||||||||||+.++||+|++|||
T Consensus 1 ~~~~~~~lK~~Y~~~v~~~k~~~~~t~~~i~fm~n~~~EL~~ld~~~sY~~aF~yIRQLAi~LR~a~~~~~k~~~~~Vyn 80 (299)
T PF03715_consen 1 SDFLETCLKGMYLAYVRNSKFTSPNTLPHINFMKNCLVELYGLDPDVSYQHAFVYIRQLAIHLRNAMTSKKKEAYKSVYN 80 (299)
T ss_pred CchHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcchhhheeeee
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHhHHHHHHHHHcc-cCCCCCccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHhccCcceechhHHHHhhc
Q 004881 453 WQYANCIDLWVTYISH-CIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLE 531 (725)
Q Consensus 453 WQfvhsL~~Ws~VLs~-~~~~s~L~pLiYPLVQVi~G~irLiPt~ryfPLRfh~ir~L~~Ls~~t~~fIPl~p~LleiL~ 531 (725)
|||+|||+||++|||+ +..+++|+||||||||||+|+|||+||+|||||||||||+|++||++||+||||+|+|+|||+
T Consensus 81 Wqfv~~l~lW~~vls~~~~~~~~L~~LiyPLvqi~~g~i~L~pt~ry~Plrlh~ir~L~~L~~~t~~fIPl~~~lleiL~ 160 (299)
T PF03715_consen 81 WQFVHCLDLWSRVLSAAAKKESQLRPLIYPLVQIIIGVIKLIPTARYFPLRLHCIRSLNRLSQSTGTFIPLAPYLLEILE 160 (299)
T ss_pred HHHHHHHHHHHHHHhcccCcchhhHhHHHHHHHHHHHHHhhcCccccCchHHHHHHHHHHHHHhcCceEecHHHHHHHHh
Confidence 9999999999999999 788899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc--CCCCCCCCCCcccccccchhhhcchhhHHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHhhhhhcchH
Q 004881 532 YKVSK--EVGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVE 609 (725)
Q Consensus 532 s~~~K--~~~~~~k~~Df~~~lk~~k~~l~t~~~qd~v~~~~~eLL~e~l~~~s~sIaFPEl~~p~i~~LKr~~K~~k~~ 609 (725)
+..++ +++++++|+||++.||+|+++++|++|||+|++++++||+||+++||+||||||+++|++++||||+|.|++.
T Consensus 161 ~~~~~~~~k~~~~kp~d~~~~Lk~~k~~l~t~~~~d~v~e~~~~LL~e~la~~s~sIaFPEl~~pii~~LKr~~K~~k~~ 240 (299)
T PF03715_consen 161 SSEFNKKPKKSSMKPLDFECLLKVSKSQLRTRQFQDGVIEEVYELLLEYLAIYSYSIAFPELALPIIVQLKRFLKSCKNA 240 (299)
T ss_pred ChhhcCCCCCCCCCCcCHHHHhhccHHHhccHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcccH
Confidence 98753 3456899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCCCHHHHHHHHHhhhcCCCCchHHHHHHHH
Q 004881 610 SLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTPFTQYYRSVM 669 (725)
Q Consensus 610 ~~~~~lk~Li~kie~n~~~I~~kR~~v~F~P~d~~~V~~Fl~~~~~~~~tPL~~y~~~~~ 669 (725)
+|++++|+|+++|++|++||+++|++|+|+|+|.++|++|+++. .+++|||++||.+|+
T Consensus 241 ~~~~~ik~Li~kiee~~~~I~~kR~~v~f~p~d~~~V~~fe~~~-~~~~tPl~~~~~~~r 299 (299)
T PF03715_consen 241 KFKRQIKQLIDKIEENSKFIESKRSKVDFSPKDQAQVEAFESEL-KWEGTPLGKYYASWR 299 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHHHhc-ccCCCCHHHHHHhhC
Confidence 99999999999999999999999999999999999999999965 489999999999985
No 4
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=99.08 E-value=4.1e-08 Score=118.51 Aligned_cols=238 Identities=14% Similarity=0.128 Sum_probs=145.1
Q ss_pred hHHHHHHHHHHHHHhhccccCccchhhhHHH--HHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 004881 375 CFDLCLIKMYKAFIGHCKFAEPALFKHLQFL--RNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICS 452 (725)
Q Consensus 375 ~le~~LK~~Y~ayv~~~k~t~~~tl~~InfM--kNs~~EL~~lD~~~sYq~AF~yIRQLAIhLRnai~~k~Kea~k~VYN 452 (725)
++-.+|+.||..|.+..-..+..+||.+.-+ -.-+.-||.. .+-+-.|.
T Consensus 513 ~~r~~L~~~~~~~~~~~l~~~~~~~P~l~~Lvllklv~~lFPT----------------------------SD~~HpVV- 563 (840)
T PF04147_consen 513 CFREVLKEMQKRFRKGALKPKERSWPSLSDLVLLKLVGTLFPT----------------------------SDFRHPVV- 563 (840)
T ss_pred HHHHHHHHHHHHHhhhcccccCCCCCChhHHHHHHHHHHhcCc----------------------------ccccCcch-
Confidence 4445677888888775444445567765521 1222233322 12222222
Q ss_pred chhHhHHHHHHHHHcccCCCCCccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHhccCcceechhH-HHHhhc
Q 004881 453 WQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSL-MLDVLE 531 (725)
Q Consensus 453 WQfvhsL~~Ws~VLs~~~~~s~L~pLiYPLVQVi~G~irLiPt~ryfPLRfh~ir~L~~Ls~~t~~fIPl~p~-LleiL~ 531 (725)
.-|+=|-++.|++ |.-..++.+..-|+=+++-.--...+-||+|=-+..+..++.++.....-..+.|+ .+....
T Consensus 564 ---TPalllm~~~L~q-~~v~s~~di~~GlfL~~l~l~y~~~SKR~vPEvinFL~~~L~~~~p~~~~~~~~~~~~~~~~~ 639 (840)
T PF04147_consen 564 ---TPALLLMSEYLSQ-CRVRSLRDIASGLFLCTLLLEYQSLSKRFVPEVINFLLGLLLLLVPEKSKKSPSPFFPSKKPS 639 (840)
T ss_pred ---hHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCcccccCCCCCCCCCcc
Confidence 2355666777764 33345666666655444444444567888888888776666665322221101111 111111
Q ss_pred ccc-ccCC----CCCCCCCCcccccccchhhhcchhhHHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHhhhhhc
Q 004881 532 YKV-SKEV----GKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKS 606 (725)
Q Consensus 532 s~~-~K~~----~~~~k~~Df~~~lk~~k~~l~t~~~qd~v~~~~~eLL~e~l~~~s~sIaFPEl~~p~i~~LKr~~K~~ 606 (725)
... .+.. .....+++|...+ ......+..++-.|+..++.||..++.+|+.+.||||++.|++..|.++..
T Consensus 640 ~~L~l~~~~~~~~~~~~~l~l~~l~--~~~~~~~~~~k~~lL~~~l~ll~~~~~l~~~~~af~eif~p~~~lL~~l~~-- 715 (840)
T PF04147_consen 640 SSLRLSSSSKSKSSEPKKLSLSDLF--SSSEEDSDQFKLSLLATALRLLDRFADLYSSLPAFPEIFEPFLSLLSHLDS-- 715 (840)
T ss_pred cceeecccccccccCcccCChhhhc--ccccccchhHHHHHHHHHHHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHh--
Confidence 110 1111 1112347777666 667788999999999999999999999999999999999999999999876
Q ss_pred chHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCCCHHHHHHH
Q 004881 607 DVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAF 649 (725)
Q Consensus 607 k~~~~~~~lk~Li~kie~n~~~I~~kR~~v~F~P~d~~~V~~F 649 (725)
-...+...+..++++|..........|..+.+.-.-...+..|
T Consensus 716 ~~~~~~~~l~~l~~~l~~~~~~~~~~r~PL~l~~~kP~~I~~~ 758 (840)
T PF04147_consen 716 LPKALPEKLQELLEKLSKILKEARRSRRPLQLQKHKPIPIKTF 758 (840)
T ss_pred ccchhHHHHHHHHHHHHHHHHhccccCCCceeccCCCcccccc
Confidence 3345567788888888888888787787776544444444443
No 5
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.0059 Score=71.68 Aligned_cols=168 Identities=12% Similarity=0.073 Sum_probs=105.0
Q ss_pred HhHHHHHHHHHcccCCCCCccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHhccCcceechhHHHHhhccc--
Q 004881 456 ANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLEYK-- 533 (725)
Q Consensus 456 vhsL~~Ws~VLs~~~~~s~L~pLiYPLVQVi~G~irLiPt~ryfPLRfh~ir~L~~Ls~~t~~fIPl~p~LleiL~s~-- 533 (725)
.-||=|-+.+|+++ +-..|+.+..-|+=+.+-.--..-+-||.|=-+..+|.++.++--...-+ -.|+=++++.+.
T Consensus 534 tPalllm~e~L~~~-p~~Sl~diakglfl~~ivleyvs~SkRyvPEvi~F~~~iL~~a~p~k~~~-~~~~~F~~~~~lse 611 (823)
T KOG2147|consen 534 TPALLLMSEALSQS-PIASLQDIAKGLFLANIVLEYVSESKRYVPEVINFLRGILLLAIPEKSSQ-EAPNPFEILKSLSE 611 (823)
T ss_pred cHHHHHHHHHHHhC-cchhHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccccccc-ccCCCcccCCCcch
Confidence 35677777888754 33456666555543322222223467999999999998888874322111 122222222221
Q ss_pred ----cccCCCCCCCCCCcccccccchhhhcchhhHHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHhhhhhcch-
Q 004881 534 ----VSKEVGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDV- 608 (725)
Q Consensus 534 ----~~K~~~~~~k~~Df~~~lk~~k~~l~t~~~qd~v~~~~~eLL~e~l~~~s~sIaFPEl~~p~i~~LKr~~K~~k~- 608 (725)
..+.-.....|.-+. +. --+.+.|..++-.|+..+++||-.+..+|.+-.||||+++||...|-.++..+..
T Consensus 612 lL~l~a~~d~~~l~p~~L~--l~-~~s~~~tp~~~~svL~~~l~li~~~~~iy~~l~af~eI~~pi~~lL~~~l~~e~~p 688 (823)
T KOG2147|consen 612 LLCLPANYDVTKLEPQSLS--LI-FLSSLSTPDLKVSVLRAVLELIEHLVLIYGSLPAFYEIFFPIFLLLLEYLQAESLP 688 (823)
T ss_pred hhccccccccccccccccc--hh-hhcCCCChhHHHHHHHHHHHHHHHHHHHHcccccHHHHHHhHHHHHHHHHhhccCc
Confidence 011111122222222 11 1234456668999999999999998899999999999999999999999887764
Q ss_pred HHHHHHHHHHHHHHHHhHHH
Q 004881 609 ESLRRVVKRFIDVVEQNIEF 628 (725)
Q Consensus 609 ~~~~~~lk~Li~kie~n~~~ 628 (725)
..+...+..++..++..+.|
T Consensus 689 ~~l~Ekl~~~l~~vek~~~~ 708 (823)
T KOG2147|consen 689 QELQEKLEDTLALVEKLTGF 708 (823)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 46677777777777777763
No 6
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=97.54 E-value=0.0034 Score=76.68 Aligned_cols=274 Identities=15% Similarity=0.170 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHhhhcccCCCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHhCCcCCCC
Q 004881 198 SAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLDCETFCKILMFVLREADDVFREMLGISSNCK 277 (725)
Q Consensus 198 ~~v~~W~~~l~~~~sl~alr~lv~AFRaA~~~~~e~~~~~~~~~ky~I~ds~VFn~vv~~~L~~lp~~l~~~l~~k~~~~ 277 (725)
...++..+.|. ..+..-...+|.-.|.+ |-..=..+ .+-++ ..+..+.|+ |++-+-...
T Consensus 426 ~s~eel~~lL~-~~~~~~~~~iI~RIrk~-~hpsLa~~-----NK~Kl------~~f~~vLlq-------~i~~la~~~- 484 (840)
T PF04147_consen 426 SSHEELLELLD-GYSPEDQPTIIQRIRKC-YHPSLAEG-----NKEKL------QVFFGVLLQ-------HILYLASQD- 484 (840)
T ss_pred CCHHHHHHHHh-cCCHHHHhHHHHHHHHh-CCCCCCcc-----hHHHH------HHHHHHHHH-------HHHHHhccc-
Confidence 46677777674 66888888999999964 43221111 11111 122222222 222221110
Q ss_pred CccccccCCCCcchhhhHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhh-hhhh-hhh----cchHHH-HHHHHHHHHhhc
Q 004881 278 RDTILGLKNNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLR-TSIV-FFA----AFPLLI-RRLIKIAVHLWA 350 (725)
Q Consensus 278 k~~~~~~~~~~kw~kl~~liKsyl~sll~LL~~ltd~~~l~~~L~~l~-~llp-y~~----~f~kl~-k~llK~lv~lWs 350 (725)
....|.-+..|+ .||.++.+....- -......+|..+. .+.+ .+. +||.+. =.|++.+-.||+
T Consensus 485 --------~~~~~~~ld~L~-~~L~~Laq~~p~~-~a~~~r~~L~~~~~~~~~~~l~~~~~~~P~l~~Lvllklv~~lFP 554 (840)
T PF04147_consen 485 --------SPPPFEVLDSLI-PHLYDLAQKYPEE-AAECFREVLKEMQKRFRKGALKPKERSWPSLSDLVLLKLVGTLFP 554 (840)
T ss_pred --------CCcCHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhcccccCCCCCChhHHHHHHHHHHhcC
Confidence 023344444444 4555555544321 1233334444442 2333 111 255543 467788888999
Q ss_pred CCC--chhHHHHHHHHHHHHhccCcchHHHHHHHHHH-----HHHhhccccCccchhhhHHHHHHHHHHhcCCccchhHH
Q 004881 351 TGE--ETVSFHSFLILQDVASGFSSDCFDLCLIKMYK-----AFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNK 423 (725)
Q Consensus 351 t~~--e~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~-----ayv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~ 423 (725)
|++ ..|---|+++|..+....+-..+..|..++|. .|++-||..-| ..|||+.+++.-+..-.... ...
T Consensus 555 TSD~~HpVVTPalllm~~~L~q~~v~s~~di~~GlfL~~l~l~y~~~SKR~vP---EvinFL~~~L~~~~p~~~~~-~~~ 630 (840)
T PF04147_consen 555 TSDFRHPVVTPALLLMSEYLSQCRVRSLRDIASGLFLCTLLLEYQSLSKRFVP---EVINFLLGLLLLLVPEKSKK-SPS 630 (840)
T ss_pred cccccCcchhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcccCh---HHHHHHHHHHHHhCCCcccc-cCC
Confidence 998 45666788888887777776677777777774 67777755432 46999999998775433322 233
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhcccchhHhHHHHHHHHHcccCCCCCcc-chHHHHHHHHhhhhcccCCCcccchH
Q 004881 424 AKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQ-PLLYIIIQIINGMATLFPGPRYLPLR 502 (725)
Q Consensus 424 AF~yIRQLAIhLRnai~~k~Kea~k~VYNWQfvhsL~~Ws~VLs~~~~~s~L~-pLiYPLVQVi~G~irLiPt~ryfPLR 502 (725)
+|.-++...-.|+ + +.+.....+-.+. |.|+.-.-........++ .|++-+++++-.++.|.-+.-=||--
T Consensus 631 ~~~~~~~~~~~L~--l--~~~~~~~~~~~~~----l~l~~l~~~~~~~~~~~k~~lL~~~l~ll~~~~~l~~~~~af~ei 702 (840)
T PF04147_consen 631 PFFPSKKPSSSLR--L--SSSSKSKSSEPKK----LSLSDLFSSSEEDSDQFKLSLLATALRLLDRFADLYSSLPAFPEI 702 (840)
T ss_pred CCCCCCCccccee--e--cccccccccCccc----CChhhhcccccccchhHHHHHHHHHHHHHHHHHHHHccCcCHHHH
Confidence 3332222222222 1 1111122222222 455544411111223344 47888888888888886654445555
Q ss_pred HHHHHHH-HHHHh
Q 004881 503 CKCIEWL-NHLSS 514 (725)
Q Consensus 503 fh~ir~L-~~Ls~ 514 (725)
|.-+..| .+|..
T Consensus 703 f~p~~~lL~~l~~ 715 (840)
T PF04147_consen 703 FEPFLSLLSHLDS 715 (840)
T ss_pred HHHHHHHHHHHHh
Confidence 5554444 44444
No 7
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=96.76 E-value=0.046 Score=63.96 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhcCChhhhHhhhhhCccccCCCC
Q 004881 132 ENKKKKLSRLKAKDPGFSKFLESHDKGLKSFRN 164 (725)
Q Consensus 132 ~~hk~~L~~LkekDPEFyKyL~enD~eLL~F~~ 164 (725)
+++-++|-++++ |||||+||+++|.+|++|.+
T Consensus 87 ~~~dk~ll~~~~-D~d~d~~lE~~d~Dled~~~ 118 (661)
T KOG2256|consen 87 KEEDKELLNFKE-DSDDDEDLEEPDEDLEDFSE 118 (661)
T ss_pred HhhhHHHhCCCC-CccchhhccCCccccccccc
Confidence 444478999999 99999999999999999944
No 8
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=92.76 E-value=0.14 Score=62.50 Aligned_cols=16 Identities=6% Similarity=0.056 Sum_probs=9.7
Q ss_pred ChHHHHHHHHHHHHHh
Q 004881 212 NASAFISLLNAYRAAC 227 (725)
Q Consensus 212 sl~alr~lv~AFRaA~ 227 (725)
..+.-+..+..||.-|
T Consensus 761 ~~~~~~~~~~~Fk~Rv 776 (784)
T PF04931_consen 761 DAKEAKENVIHFKNRV 776 (784)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3556666666777543
No 9
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.03 E-value=4.2 Score=44.10 Aligned_cols=187 Identities=11% Similarity=0.100 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHhhcC-CcHHHHHHHHHHhhhhhhhhhcchHHHHH--------HHHHHHHhhcCCCchhHHHHHHHHH
Q 004881 295 PLIKSYLRSTLFMLNQA-TDSEILAFSLNRLRTSIVFFAAFPLLIRR--------LIKIAVHLWATGEETVSFHSFLILQ 365 (725)
Q Consensus 295 ~liKsyl~sll~LL~~l-td~~~l~~~L~~l~~llpy~~~f~kl~k~--------llK~lv~lWst~~e~vrv~AFl~Lr 365 (725)
.-...|..-+++||+.+ ++++++.++|.-+..++.---.+-.+... ....++++-..++.-++..|..++-
T Consensus 51 ~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt 130 (312)
T PF03224_consen 51 EDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILT 130 (312)
T ss_dssp -----------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHH
T ss_pred hchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 33446777788999999 99999999999988765433333333322 3345555555566667877777777
Q ss_pred HHHhccCcchHH---HHHHHHHHHHHhhccccCccchhhhHHHHHHHHHHhcCCccchhHHHH---HHHHHHHHHHHHhh
Q 004881 366 DVASGFSSDCFD---LCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAK---VSINNLSRILQLGL 439 (725)
Q Consensus 366 ~l~~~~~~~~le---~~LK~~Y~ayv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF---~yIRQLAIhLRnai 439 (725)
.++...+...-. .+| ..|..++++ ..+..+-+.+...-.|+.+|... -.|+..| ..+..|.-.||...
T Consensus 131 ~Ll~~~~~~~~~~~~~~l-~~ll~~L~~--~l~~~~~~~~~~av~~L~~LL~~---~~~R~~f~~~~~v~~l~~iL~~~~ 204 (312)
T PF03224_consen 131 SLLSQGPKRSEKLVKEAL-PKLLQWLSS--QLSSSDSELQYIAVQCLQNLLRS---KEYRQVFWKSNGVSPLFDILRKQA 204 (312)
T ss_dssp HHHTSTTT--HHHHHHHH-HHHHHHHH---TT-HHHH---HHHHHHHHHHHTS---HHHHHHHHTHHHHHHHHHHHH---
T ss_pred HHHHcCCccccchHHHHH-HHHHHHHHH--hhcCCCcchHHHHHHHHHHHhCc---chhHHHHHhcCcHHHHHHHHHhhc
Confidence 777766554444 444 566666766 44445556667777888888755 5677777 46666777776444
Q ss_pred hhhhhhhhhhcccchhHhHHHHHHHHHcccCCCCCc--cchHHHHHHHHhhhhcc
Q 004881 440 QTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDL--QPLLYIIIQIINGMATL 492 (725)
Q Consensus 440 ~~k~Kea~k~VYNWQfvhsL~~Ws~VLs~~~~~s~L--~pLiYPLVQVi~G~irL 492 (725)
..++.-.+|..| --++=+|.--.....-+ .+ ..+|..|++|+--+.|-
T Consensus 205 ~~~~~~~~Ql~Y----~~ll~lWlLSF~~~~~~-~~~~~~~i~~L~~i~~~~~KE 254 (312)
T PF03224_consen 205 TNSNSSGIQLQY----QALLCLWLLSFEPEIAE-ELNKKYLIPLLADILKDSIKE 254 (312)
T ss_dssp ------HHHHHH----HHHHHHHHHTTSHHHHH-HHHTTSHHHHHHHHHHH--SH
T ss_pred ccCCCCchhHHH----HHHHHHHHHhcCHHHHH-HHhccchHHHHHHHHHhcccc
Confidence 445555666654 45555685433321100 01 12788888877665543
No 10
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.27 E-value=0.088 Score=63.20 Aligned_cols=11 Identities=36% Similarity=0.317 Sum_probs=7.1
Q ss_pred cCChhhhHhhh
Q 004881 143 AKDPGFSKFLE 153 (725)
Q Consensus 143 ekDPEFyKyL~ 153 (725)
+-||+|-.-|+
T Consensus 1466 ~~D~df~~ele 1476 (1516)
T KOG1832|consen 1466 LIDGDFMEELE 1476 (1516)
T ss_pred CCChHHHHHHh
Confidence 45888877433
No 11
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=88.52 E-value=23 Score=40.71 Aligned_cols=152 Identities=15% Similarity=0.169 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHhhhhhhh-------hhcc----hHHHHHHHHHHHHhhcCCCchhHHHHHHHHHH
Q 004881 298 KSYLRSTLFMLNQATDSEILAFSLNRLRTSIVF-------FAAF----PLLIRRLIKIAVHLWATGEETVSFHSFLILQD 366 (725)
Q Consensus 298 Ksyl~sll~LL~~ltd~~~l~~~L~~l~~llpy-------~~~f----~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~ 366 (725)
-.|...+++||+.++.++++..+|.-+..++.- |... +.....|++ +-...+.-+...||-+|-.
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~----lL~~~d~~i~~~a~~iLt~ 127 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFN----LLNRQDQFIVHMSFSILAK 127 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHH----HHcCCchhHHHHHHHHHHH
Confidence 578888999999999999999999888765433 3322 223334443 2224445577788877777
Q ss_pred HHhccCcchHHHHHHHHHHHHHhhccccCccchhhhHHHHHHHHHHhcCCccchhHHHHH---HHHHHHHHHHHhhhhhh
Q 004881 367 VASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKV---SINNLSRILQLGLQTKK 443 (725)
Q Consensus 367 l~~~~~~~~le~~LK~~Y~ayv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~---yIRQLAIhLRnai~~k~ 443 (725)
++...+...-...+ ..|..++.+ ...+++....+.+--+|+.+|...+ .|+..|. .+.-|.-.||++.
T Consensus 128 l~~~~~~~~~~~~l-~~~~~~l~~-~l~~~~~~~~~~~~v~~L~~LL~~~---~~R~~f~~~~~v~~L~~~L~~~~---- 198 (429)
T cd00256 128 LACFGLAKMEGSDL-DYYFNWLKE-QLNNITNNDYVQTAARCLQMLLRVD---EYRFAFVLADGVPTLVKLLSNAT---- 198 (429)
T ss_pred HHhcCccccchhHH-HHHHHHHHH-HhhccCCcchHHHHHHHHHHHhCCc---hHHHHHHHccCHHHHHHHHhhcc----
Confidence 76654433222222 224444442 2222345566777778999998875 4666665 4555666666544
Q ss_pred hhhhhhcccchhHhHHHHHHHHHc
Q 004881 444 KEAVKKICSWQYANCIDLWVTYIS 467 (725)
Q Consensus 444 Kea~k~VYNWQfvhsL~~Ws~VLs 467 (725)
-.+|. ||--++=+|.--..
T Consensus 199 -~~~Ql----~Y~~ll~lWlLSF~ 217 (429)
T cd00256 199 -LGFQL----QYQSIFCIWLLTFN 217 (429)
T ss_pred -ccHHH----HHHHHHHHHHHhcc
Confidence 12333 56677778865444
No 12
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=87.71 E-value=75 Score=38.68 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhccccCccc-hhhhHHHHHHHHHHhcCCc-cchhHHH--HHHHHHHHHH
Q 004881 380 LIKMYKAFIGHCKFAEPAL-FKHLQFLRNSFVELCSQDL-LRSSNKA--KVSINNLSRI 434 (725)
Q Consensus 380 LK~~Y~ayv~~~k~t~~~t-l~~InfMkNs~~EL~~lD~-~~sYq~A--F~yIRQLAIh 434 (725)
||.+-...-.....-.+.+ .|.++||-.++.-|=.=++ .+.|-.+ +.-.|++-..
T Consensus 483 lk~~i~eiq~~a~~a~~s~~~pR~rFmleti~aLKnN~~kki~~~d~e~ve~lrk~~k~ 541 (822)
T KOG2141|consen 483 LKDIITEIQSKAASAKISAISPRLRFMLETISALKNNKLKKIPYADPERVENLRKLKKA 541 (822)
T ss_pred HHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHhcCCCcCCCcCChHHHHHHHHHHHH
Confidence 3333333333333333333 7999999999988876554 2223222 6667765443
No 13
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.84 E-value=15 Score=43.28 Aligned_cols=94 Identities=13% Similarity=0.165 Sum_probs=61.3
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccC-------cchHHHHHHHHH----------HHHHh-hccccCccchh
Q 004881 339 RRLIKIAVHLWATGEETVSFHSFLILQDVASGFS-------SDCFDLCLIKMY----------KAFIG-HCKFAEPALFK 400 (725)
Q Consensus 339 k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~-------~~~le~~LK~~Y----------~ayv~-~~k~t~~~tl~ 400 (725)
+.++..+....+...+.+||++.--|+-+-...+ .+++.+.||+.= ...+. -|..-+.. .
T Consensus 335 ~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~--~ 412 (675)
T KOG0212|consen 335 GSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSP--N 412 (675)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccc--c
Confidence 5677777777788888899999888887776554 333444444321 01111 12222111 2
Q ss_pred hhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHH
Q 004881 401 HLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRIL 435 (725)
Q Consensus 401 ~InfMkNs~~EL~~lD~~~sYq~AF~yIRQLAIhL 435 (725)
.+.| -+|+.|||.-|+..-|..|=.-||||...|
T Consensus 413 ~~~f-l~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL 446 (675)
T KOG0212|consen 413 LRKF-LLSLLEMFKEDTKLLEVRGNLIIRQLCLLL 446 (675)
T ss_pred HHHH-HHHHHHHHhhhhHHHHhhhhHHHHHHHHHh
Confidence 2444 478999999999999999999999986554
No 14
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=82.37 E-value=12 Score=42.87 Aligned_cols=213 Identities=10% Similarity=0.084 Sum_probs=125.9
Q ss_pred cchHHHHHHHHHHHHHhhccccCccchhhhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 004881 373 SDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICS 452 (725)
Q Consensus 373 ~~~le~~LK~~Y~ayv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yIRQLAIhLRnai~~k~Kea~k~VYN 452 (725)
.++.+.+|...+..+-++.. ..=.|...|+.-++.+-....-.++-.-+-+|+-+|....++.++-.| |
T Consensus 21 ~p~~~~ll~~Lf~~i~~~~s-------~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~F----n 89 (435)
T PF03378_consen 21 QPFAQQLLQNLFALIEKPGS-------AENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRF----N 89 (435)
T ss_dssp TCCHHHHHHHHHHHHHTT-S-------TC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHH----H
T ss_pred hhhHHHHHHHHHHHHhcCCC-------ccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcch----h
Confidence 35566666666666544332 233577888888887766666677889999999999877776543322 2
Q ss_pred chhHhHHHHHHHHHcccCC--CCCccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHh---ccCcceechhHHH
Q 004881 453 WQYANCIDLWVTYISHCIH--DYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSS---SSGIFIPVTSLML 527 (725)
Q Consensus 453 WQfvhsL~~Ws~VLs~~~~--~s~L~pLiYPLVQVi~G~irLiPt~ryfPLRfh~ir~L~~Ls~---~t~~fIPl~p~Ll 527 (725)
---..||-.-.+..+.... -..+.+.++|+.|.|+.- --.-|+|..|+++-.|+.+.. -...|..++|.|+
T Consensus 90 HylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~----dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll 165 (435)
T PF03378_consen 90 HYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQ----DVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLL 165 (435)
T ss_dssp HHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHT----T-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHT
T ss_pred hhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHc
Confidence 1122334444444442111 125788899999988861 225999999999999999987 3468888998888
Q ss_pred Hhhcccc--------------ccCCCCC-CCCCCcccccccchhhhcchhhHHHHHHHHHHHHHHHHHHhhcCCccccch
Q 004881 528 DVLEYKV--------------SKEVGKP-GKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELA 592 (725)
Q Consensus 528 eiL~s~~--------------~K~~~~~-~k~~Df~~~lk~~k~~l~t~~~qd~v~~~~~eLL~e~l~~~s~sIaFPEl~ 592 (725)
..--+.. .++.+.. ..+=.....|-+=+..+.++. .|.-...+++-+.+|+-.-.....+|.+.
T Consensus 166 ~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~-~D~~gF~LL~~iv~~~p~~~l~~yl~~I~ 244 (435)
T PF03378_consen 166 SPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKA-NDHYGFDLLESIVENLPPEALEPYLKQIF 244 (435)
T ss_dssp SGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TT-CHHHHHHHHHHHHHHS-HHHHGGGHHHHH
T ss_pred CcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCC-cchHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 6544321 0111110 111223445555555566665 34444567777777877766667777777
Q ss_pred hHHHHHHHh
Q 004881 593 TIPLIHLRK 601 (725)
Q Consensus 593 ~p~i~~LKr 601 (725)
...+.+|..
T Consensus 245 ~lll~RLq~ 253 (435)
T PF03378_consen 245 TLLLTRLQS 253 (435)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 666666653
No 15
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=79.55 E-value=3 Score=47.38 Aligned_cols=7 Identities=29% Similarity=0.662 Sum_probs=2.9
Q ss_pred chHHHHH
Q 004881 16 LQSVLKR 22 (725)
Q Consensus 16 L~~~~~~ 22 (725)
+.+||++
T Consensus 28 i~DtlkK 34 (458)
T PF10446_consen 28 INDTLKK 34 (458)
T ss_pred HHHHHHH
Confidence 3344443
No 16
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=76.75 E-value=65 Score=39.28 Aligned_cols=38 Identities=13% Similarity=0.209 Sum_probs=21.5
Q ss_pred hhcCCC--chhHHHHHHHHHHHHhccCcchHHHHHHHHHH
Q 004881 348 LWATGE--ETVSFHSFLILQDVASGFSSDCFDLCLIKMYK 385 (725)
Q Consensus 348 lWst~~--e~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~ 385 (725)
|++|++ .-|=.-|++++...-...+-..+..|-|++|.
T Consensus 522 LFptSDf~HpVVtPalllm~e~L~~~p~~Sl~diakglfl 561 (823)
T KOG2147|consen 522 LFPTSDFRHPVVTPALLLMSEALSQSPIASLQDIAKGLFL 561 (823)
T ss_pred cccccccccccccHHHHHHHHHHHhCcchhHHHHHHHHHH
Confidence 334444 33555667776665555555556666566554
No 17
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=76.54 E-value=16 Score=41.63 Aligned_cols=155 Identities=17% Similarity=0.210 Sum_probs=93.3
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHh-hcC-----CC-chhHHH-HHHHHHHHHhc
Q 004881 299 SYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHL-WAT-----GE-ETVSFH-SFLILQDVASG 370 (725)
Q Consensus 299 syl~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~l-Wst-----~~-e~vrv~-AFl~Lr~l~~~ 370 (725)
.|...+++||+++..+++..++|.-+..++.=.-++-.+.+.+--..-+. |.. .. +..-+. +|-+|-.++.-
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~ 144 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACF 144 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 67888999999999999999998877665433333333333332222222 432 12 233333 56666666654
Q ss_pred cCcchHHHHHHHHHHHHHhhccccCccchhhhHHHHHHHHHHhcCCccchhHHHHHHHH--HHHHHHHHhhhhhhhhhhh
Q 004881 371 FSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSIN--NLSRILQLGLQTKKKEAVK 448 (725)
Q Consensus 371 ~~~~~le~~LK~~Y~ayv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yIR--QLAIhLRnai~~k~Kea~k 448 (725)
+ ..-++..-...|..+++..-.- .++...|+|+-+|+-+|+-++ .|+++|+=+- |+++++=. .++-+||
T Consensus 145 g-~~~~~~~e~~~~~~~l~~~l~~-~~~~~~~~~~~rcLQ~ll~~~---eyR~~~v~adg~~~l~~~l~----s~~~~~Q 215 (442)
T KOG2759|consen 145 G-NCKMELSELDVYKGFLKEQLQS-STNNDYIQFAARCLQTLLRVD---EYRYAFVIADGVSLLIRILA----STKCGFQ 215 (442)
T ss_pred c-cccccchHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHhcCc---chhheeeecCcchhhHHHHh----ccCcchh
Confidence 4 4445555567788888763221 356678999999999999987 4899887522 22222211 3344555
Q ss_pred hcccchhHhHHHHHHHHH
Q 004881 449 KICSWQYANCIDLWVTYI 466 (725)
Q Consensus 449 ~VYNWQfvhsL~~Ws~VL 466 (725)
- ||-.++=+|.--.
T Consensus 216 l----QYqsifciWlLtF 229 (442)
T KOG2759|consen 216 L----QYQSIFCIWLLTF 229 (442)
T ss_pred H----HHHHHHHHHHhhc
Confidence 3 5666666786543
No 18
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=67.23 E-value=20 Score=40.91 Aligned_cols=110 Identities=18% Similarity=0.080 Sum_probs=69.2
Q ss_pred CcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhhc
Q 004881 312 TDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHC 391 (725)
Q Consensus 312 td~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~ayv~~~ 391 (725)
+++-+...+|+.+.. ++.+.+...++..+.++-+++...||-.|.+++.++....+..+-..++..++..+
T Consensus 91 ~n~~~~~lAL~~l~~-----i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL---- 161 (526)
T PF01602_consen 91 PNPYIRGLALRTLSN-----IRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLL---- 161 (526)
T ss_dssp SSHHHHHHHHHHHHH-----H-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHT----
T ss_pred CCHHHHHHHHhhhhh-----hcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhc----
Confidence 345677788888877 44788889999999999998888999999999999998865543222455554443
Q ss_pred cccCccchhhhHHHHHHHHHHhcC-CccchhHHHHHHHHHHHHHHHHhh
Q 004881 392 KFAEPALFKHLQFLRNSFVELCSQ-DLLRSSNKAKVSINNLSRILQLGL 439 (725)
Q Consensus 392 k~t~~~tl~~InfMkNs~~EL~~l-D~~~sYq~AF~yIRQLAIhLRnai 439 (725)
+-.+ ...+.+++.=|+.+ ..+..|. ..++++..+|.+.+
T Consensus 162 ~d~~------~~V~~~a~~~l~~i~~~~~~~~---~~~~~~~~~L~~~l 201 (526)
T PF01602_consen 162 SDKD------PSVVSAALSLLSEIKCNDDSYK---SLIPKLIRILCQLL 201 (526)
T ss_dssp THSS------HHHHHHHHHHHHHHHCTHHHHT---THHHHHHHHHHHHH
T ss_pred cCCc------chhHHHHHHHHHHHccCcchhh---hhHHHHHHHhhhcc
Confidence 1111 22333333333444 3444443 45555555555543
No 19
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.23 E-value=1.1e+02 Score=37.81 Aligned_cols=181 Identities=14% Similarity=0.196 Sum_probs=115.9
Q ss_pred hhhhhhcchH-----HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccC------------cchHHHHHHHHHHHHHh
Q 004881 327 SIVFFAAFPL-----LIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFS------------SDCFDLCLIKMYKAFIG 389 (725)
Q Consensus 327 llpy~~~f~k-----l~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~------------~~~le~~LK~~Y~ayv~ 389 (725)
.+-|+..||+ ++-.++..++++..+..-.|--.|=.+|-++-..-. .++.+..|...+.++-
T Consensus 480 aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s- 558 (960)
T KOG1992|consen 480 AIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALS- 558 (960)
T ss_pred ccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhcc-
Confidence 3556777776 346778888888887665555434344444332111 3556677777775432
Q ss_pred hccccCccchhhhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccchhHhHH-HHHHHHHcc
Q 004881 390 HCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCI-DLWVTYISH 468 (725)
Q Consensus 390 ~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yIRQLAIhLRnai~~k~Kea~k~VYNWQfvhsL-~~Ws~VLs~ 468 (725)
.|.. .-=.|...|+--.+++++...-.||=.-||||+-.+-..- |+.-|=||-|-| +--+-+|-.
T Consensus 559 -----~p~~-~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~--------KNPs~P~fnHYLFEsi~~li~~ 624 (960)
T KOG1992|consen 559 -----LPGK-AENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVS--------KNPSNPQFNHYLFESIGLLIRK 624 (960)
T ss_pred -----CCcc-cccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHh--------cCCCCchhHHHHHHHHHHHHHH
Confidence 2222 2224778888899999999999999999999998886444 444566777764 222333333
Q ss_pred cCCC-----CCccchHHHHHHHHhhhhcccCC-CcccchHHHHHHHHHHHHhcc--CcceechhHHH
Q 004881 469 CIHD-----YDLQPLLYIIIQIINGMATLFPG-PRYLPLRCKCIEWLNHLSSSS--GIFIPVTSLML 527 (725)
Q Consensus 469 ~~~~-----s~L~pLiYPLVQVi~G~irLiPt-~ryfPLRfh~ir~L~~Ls~~t--~~fIPl~p~Ll 527 (725)
.|+. +.+-.=+.|+.|.++. .- --|+|.-|+++-.|+..+..| .-|-|++|+|+
T Consensus 625 t~~~~~~~vs~~e~aL~p~fq~Il~-----eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lL 686 (960)
T KOG1992|consen 625 TCKANPSAVSSLEEALFPVFQTILS-----EDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLL 686 (960)
T ss_pred HhccCchHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhc
Confidence 3321 2355556788888763 22 479999999999999888762 45666666554
No 20
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=66.72 E-value=1.2e+02 Score=34.74 Aligned_cols=155 Identities=17% Similarity=0.230 Sum_probs=77.5
Q ss_pred hhhcchHHHHH-HHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhhccccCccchhhhHHHHHH
Q 004881 330 FFAAFPLLIRR-LIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNS 408 (725)
Q Consensus 330 y~~~f~kl~k~-llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~ayv~~~k~t~~~tl~~InfMkNs 408 (725)
.+-.+|.+... ++..+..+-...+..|+.+|..++..+ . .+......++...|..+.+-. ..+..| ++-.
T Consensus 141 i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~-~~~~~~~~~~~~~~~~L~~~l--~~~~~~-----~q~~ 211 (526)
T PF01602_consen 141 IYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-K-CNDDSYKSLIPKLIRILCQLL--SDPDPW-----LQIK 211 (526)
T ss_dssp HHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-H-CTHHHHTTHHHHHHHHHHHHH--TCCSHH-----HHHH
T ss_pred HhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-c-cCcchhhhhHHHHHHHhhhcc--cccchH-----HHHH
Confidence 34446666666 688888888666777888999888888 2 222221133444444333222 222333 3333
Q ss_pred HHHHhcCCccchhHHH--HHHHHHHHHHHHHhhhhhhhhhhhhcccchhHhHHHHHHHHHcccCCCCCccchHHHHHHHH
Q 004881 409 FVELCSQDLLRSSNKA--KVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQII 486 (725)
Q Consensus 409 ~~EL~~lD~~~sYq~A--F~yIRQLAIhLRnai~~k~Kea~k~VYNWQfvhsL~~Ws~VLs~~~~~s~L~pLiYPLVQVi 486 (725)
++.+++.-.......+ ..+|..+.-.|+++-..=.-++.+.+++|.--. .-++..+-||++.+
T Consensus 212 il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~---------------~~~~~~~~~L~~lL 276 (526)
T PF01602_consen 212 ILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSP---------------ELLQKAINPLIKLL 276 (526)
T ss_dssp HHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSH---------------HHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcch---------------HHHHhhHHHHHHHh
Confidence 3444443233333333 556666666666332221123333333211111 11222333333222
Q ss_pred hhhhcccCCCcccchHHHHHHHHHHHHhcc
Q 004881 487 NGMATLFPGPRYLPLRCKCIEWLNHLSSSS 516 (725)
Q Consensus 487 ~G~irLiPt~ryfPLRfh~ir~L~~Ls~~t 516 (725)
. ..-..+|+-.++.|..|++..
T Consensus 277 ----~----s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 277 ----S----SSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp ----T----SSSHHHHHHHHHHHHHHCCHC
T ss_pred ----h----cccchhehhHHHHHHHhhccc
Confidence 2 223348888899999998776
No 21
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=66.03 E-value=41 Score=30.68 Aligned_cols=63 Identities=5% Similarity=0.136 Sum_probs=52.0
Q ss_pred chHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhhccccCcc
Q 004881 334 FPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPA 397 (725)
Q Consensus 334 f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~ayv~~~k~t~~~ 397 (725)
.......+++-++...+..+..||..|+-.|.+|+......++. .+-.+|-++.+-+.-++++
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~d~~ 83 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADPDEN 83 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCchh
Confidence 46677888999999999999999999999999999998777766 7778888888776665543
No 22
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=64.31 E-value=9.6 Score=46.17 Aligned_cols=8 Identities=13% Similarity=0.061 Sum_probs=4.3
Q ss_pred hccCCCCc
Q 004881 71 IFSEDESD 78 (725)
Q Consensus 71 ff~~~~~~ 78 (725)
-|.+|++.
T Consensus 857 e~e~~~e~ 864 (988)
T KOG2038|consen 857 EFEFGAEK 864 (988)
T ss_pred hhhcCchh
Confidence 35555554
No 23
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=62.26 E-value=2.3e+02 Score=34.78 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhCCcCCCCCccccccCCCCcchhhhHHHHHHHHHHHHHhhcCCcHHHHHH--HHHHhhhhhhhhhcchHH
Q 004881 260 READDVFREMLGISSNCKRDTILGLKNNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAF--SLNRLRTSIVFFAAFPLL 337 (725)
Q Consensus 260 ~~lp~~l~~~l~~k~~~~k~~~~~~~~~~kw~kl~~liKsyl~sll~LL~~ltd~~~l~~--~L~~l~~llpy~~~f~kl 337 (725)
+|+|+.+|+.|+-... +..-.+++.-+++ +|+.|+++.+... -|..|-.-.+=+.--..+
T Consensus 297 KYvPPslRkkl~~~~~-----------sE~l~rl~rkv~g-------~LNKLSdaNi~~I~~~i~~Ly~~~sr~~v~~sL 358 (822)
T KOG2141|consen 297 KYVPPSLRKKLETSSE-----------SEQLQRLRRKVNG-------SLNKLSDANIIKIIAGIAELYMNNSRYDVTSSL 358 (822)
T ss_pred ccCCHHHHHHhcCccc-----------hHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 5789999998873322 1111233333332 4556666654432 222332222222222556
Q ss_pred HHHHHHHHHHhhcCCCc
Q 004881 338 IRRLIKIAVHLWATGEE 354 (725)
Q Consensus 338 ~k~llK~lv~lWst~~e 354 (725)
++-++++++...+.-..
T Consensus 359 tk~l~~~~~~~~~~ld~ 375 (822)
T KOG2141|consen 359 TKLLLKALLGPFRLLDS 375 (822)
T ss_pred HHHHHHHhhhhHHHHHH
Confidence 77777777777666554
No 24
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.32 E-value=5.1e+02 Score=33.61 Aligned_cols=245 Identities=13% Similarity=0.097 Sum_probs=154.5
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCCCCCCccccCH-HHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccc-cCC
Q 004881 209 EQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLDC-ETFCKILMFVLREADDVFREMLGISSNCKRDTILG-LKN 286 (725)
Q Consensus 209 ~~~sl~alr~lv~AFRaA~~~~~e~~~~~~~~~ky~I~ds-~VFn~vv~~~L~~lp~~l~~~l~~k~~~~k~~~~~-~~~ 286 (725)
++.+=+.+|.++.+.+.-...-+- ..|...++ ..|..++.+++..-|.+=..-+..-. .|+. |+
T Consensus 105 ~stn~svlr~~iscL~~lLraQd~--------~aW~~~~t~~~~~~il~~~~h~~pkvRk~a~~~i~-----~VL~~p~- 170 (1176)
T KOG1248|consen 105 ESTNGSVLRLAISCLEDLLRAQDA--------SAWSYSSTKTELFGILAFAAHKKPKVRKAAQRGIA-----AVLKGPP- 170 (1176)
T ss_pred hcccchHHHHHHHHHHHHHHHcch--------hhhccccHHHHHHHHHHHHhcCchHHHHHHHHHHH-----HHHcCCC-
Confidence 466777888888888876665221 23443332 34667777777666654211110000 0100 00
Q ss_pred CCcchhhhHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchH-HHHHHHHHHHHhhcCCCchhHHHHHHHHH
Q 004881 287 NSKWKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPL-LIRRLIKIAVHLWATGEETVSFHSFLILQ 365 (725)
Q Consensus 287 ~~kw~kl~~liKsyl~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~k-l~k~llK~lv~lWst~~e~vrv~AFl~Lr 365 (725)
.-..+..|.+.+=..=.+.+++..-.+...+-+++.|.=+--.+.+||. +.+.+..+++.+.+.+.--++..+|-|+.
T Consensus 171 -~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~ 249 (1176)
T KOG1248|consen 171 -FAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLNITTESPVLVLLEVLQCLH 249 (1176)
T ss_pred -CCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 0111225566665666677776665566666677777665555666886 77899999999988888889999999999
Q ss_pred HHHhccCcchHHHHHHHHHHHHHhhccccCccchhhhHHHH--HH-HHHHhcCCccchhHHHHHH-----------HHHH
Q 004881 366 DVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLR--NS-FVELCSQDLLRSSNKAKVS-----------INNL 431 (725)
Q Consensus 366 ~l~~~~~~~~le~~LK~~Y~ayv~~~k~t~~~tl~~InfMk--Ns-~~EL~~lD~~~sYq~AF~y-----------IRQL 431 (725)
.+....+. .+...+-..-.+-+.--+......++.+-||+ |- -.=|-.+++..+-|+.+.. ++|+
T Consensus 250 ~lf~~~~~-~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~~~s~~~e~ 328 (1176)
T KOG1248|consen 250 SLFKKHPT-ALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQEEKALQALPRLFSLFFTILESLIEEL 328 (1176)
T ss_pred HHHhcCCC-cchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHHHhcccHHH
Confidence 99987655 77777767777777777777778888887763 22 2233445777777765443 3888
Q ss_pred HHHHHHhhhhhhhh-----------hhhhcccchhHhHHHHHHHHHccc
Q 004881 432 SRILQLGLQTKKKE-----------AVKKICSWQYANCIDLWVTYISHC 469 (725)
Q Consensus 432 AIhLRnai~~k~Ke-----------a~k~VYNWQfvhsL~~Ws~VLs~~ 469 (725)
+.-.+++++.=-++ .+-...+..|-+|-++--+++|+-
T Consensus 329 ~q~a~q~l~~il~~sv~~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~ 377 (1176)
T KOG1248|consen 329 VQAASQSLKEILKESVTVIDALCSKQLHSLLDYKFHAVWRFILQILSAL 377 (1176)
T ss_pred HHHHHHHHHHHhcccCcccHHHHHHHHHHHHcchHHHHHHHHHHHHHHH
Confidence 88888888742222 234445566777766666677653
No 25
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=58.24 E-value=30 Score=44.22 Aligned_cols=73 Identities=5% Similarity=-0.069 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhhccccCccchhhhHHHHHHHHHHhc
Q 004881 335 PLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCS 414 (725)
Q Consensus 335 ~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~ayv~~~k~t~~~tl~~InfMkNs~~EL~~ 414 (725)
.-..+.+++-+.++++.=.=+|. +|.|..+.+. .++.+.|+.|=|.---.| |-|..
T Consensus 1532 EAar~~Iv~Ev~~VF~vYGIsVd------~RHLsLiADY----MTf~G~y~pfnR~Gm~~s--sSP~q------------ 1587 (1640)
T KOG0262|consen 1532 EAARNAIVNEVNNVFKVYGISVD------IRHLSLIADY----MTFEGGYQPFNRMGMESS--SSPLQ------------ 1587 (1640)
T ss_pred HHHHHHHHHHHHHhhhheeeeec------HHHHHHHHHH----HhhccccccccccccccC--CChhH------------
Confidence 34446677777777765321111 2333333222 245567777766553332 33321
Q ss_pred CCccchhHHHHHHHHHHHHH
Q 004881 415 QDLLRSSNKAKVSINNLSRI 434 (725)
Q Consensus 415 lD~~~sYq~AF~yIRQLAIh 434 (725)
..+|..++-|++|-|.+
T Consensus 1588 ---kMsFETt~~Fl~~Aa~~ 1604 (1640)
T KOG0262|consen 1588 ---KMSFETTCQFLKQAALF 1604 (1640)
T ss_pred ---hhhHHHHHHHHHHHHhc
Confidence 24677777788776654
No 26
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=57.74 E-value=1.5e+02 Score=36.06 Aligned_cols=184 Identities=12% Similarity=0.144 Sum_probs=90.0
Q ss_pred HHhhcCCcHHHHHHHHHHhhhh---hhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchHHHHHHH
Q 004881 306 FMLNQATDSEILAFSLNRLRTS---IVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIK 382 (725)
Q Consensus 306 ~LL~~ltd~~~l~~~L~~l~~l---lpy~~~f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~~~~le~~LK~ 382 (725)
+.|+.-.+++++..+|.++... +||=..|. -.++--++.-+-+ -.++|+++.-||-.++..+..+.-....++
T Consensus 199 qiLE~~~~~SLi~ATLesllrfl~wiPl~yIfe---TnIieLv~~~f~s-~pd~r~~tl~CLtEi~~L~~~pq~n~~~~r 274 (1053)
T COG5101 199 QILEYSRDESLIEATLESLLRFLEWIPLDYIFE---TNIIELVLEHFNS-MPDTRVATLSCLTEIVDLGRHPQENAEKER 274 (1053)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHhhCchhHHHH---HHHHHHHHHHhcc-CCchhHHHHHHHHHHHhhccCcccchhhhh
Confidence 4566668899999999888653 33333322 2233333332222 245788888999888876644433333333
Q ss_pred HHHHHHhhcccc-CccchhhhHHHHHHHHHHhcC-CccchhHHHHHHHHHHHHHHHHhhhh------------hhhhhhh
Q 004881 383 MYKAFIGHCKFA-EPALFKHLQFLRNSFVELCSQ-DLLRSSNKAKVSINNLSRILQLGLQT------------KKKEAVK 448 (725)
Q Consensus 383 ~Y~ayv~~~k~t-~~~tl~~InfMkNs~~EL~~l-D~~~sYq~AF~yIRQLAIhLRnai~~------------k~Kea~k 448 (725)
....+.++.-+. ....+ +...-+-|.||= |.+ -=.||..||.-|-.-... ..+.+..
T Consensus 275 ~~v~~fq~i~~~~~~s~~----p~~~d~~e~Y~~~~~n-----eq~Fvq~LA~fL~s~~~~~~~lLE~~e~~e~llnah~ 345 (1053)
T COG5101 275 ILVIHFQCIEFLKMYSNK----PQEEDIYEVYGGMDKN-----EQIFVQKLAQFLSSLYEVYISLLEAREMAENLLNAHG 345 (1053)
T ss_pred HHHHHHHHHHHHHHHhcc----chHHHHHHHHcccChh-----HHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHH
Confidence 333332222110 00111 122333344442 110 112344444433322210 0111111
Q ss_pred hcccc-------hhHhHHHHHHHHHcccC------CCCCccchHHHHHHHHhhhhcc--cCC-CcccchHHHHH
Q 004881 449 KICSW-------QYANCIDLWVTYISHCI------HDYDLQPLLYIIIQIINGMATL--FPG-PRYLPLRCKCI 506 (725)
Q Consensus 449 ~VYNW-------QfvhsL~~Ws~VLs~~~------~~s~L~pLiYPLVQVi~G~irL--iPt-~ryfPLRfh~i 506 (725)
-+.+- -|-.||+.|..+++... +.+.+. ||+|+..|+--+ .|+ ..-+|||=|+-
T Consensus 346 YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~----Pli~ls~~s~~istnpn~~~~~pLrkhiY 415 (1053)
T COG5101 346 YLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMS----PLIQLSVGSQAISTNPNQDSTKPLRKHIY 415 (1053)
T ss_pred HhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccC----cchhccccchhccCCcchhcccchHHHHH
Confidence 11100 16679999999998633 223344 667887776544 443 35689998863
No 27
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=55.53 E-value=18 Score=42.17 Aligned_cols=15 Identities=20% Similarity=0.395 Sum_probs=8.8
Q ss_pred CCCCccCCchhhhcc
Q 004881 59 ENGDIEDMSLEAIFS 73 (725)
Q Consensus 59 ~~~~~~~msvd~ff~ 73 (725)
+...+.||+.|+--.
T Consensus 228 ~e~~~~dl~~d~~~~ 242 (555)
T KOG2393|consen 228 KENSIADLEIDEAES 242 (555)
T ss_pred ccccccccccchhhh
Confidence 355566777665533
No 28
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.69 E-value=20 Score=36.46 Aligned_cols=15 Identities=20% Similarity=0.087 Sum_probs=10.5
Q ss_pred CCCCccCCchhhhcc
Q 004881 59 ENGDIEDMSLEAIFS 73 (725)
Q Consensus 59 ~~~~~~~msvd~ff~ 73 (725)
-+.+|...+|..+-.
T Consensus 160 ~~~~~~s~~~~~~~~ 174 (227)
T KOG3241|consen 160 VGDVFPSTSLEEYAN 174 (227)
T ss_pred hcccccchhHHHHHh
Confidence 366788888877655
No 29
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.92 E-value=81 Score=37.53 Aligned_cols=67 Identities=13% Similarity=0.275 Sum_probs=44.1
Q ss_pred HHHHhhcCCcH--HHHHHHHHHhhhhhhhhhcchH--HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcc
Q 004881 304 TLFMLNQATDS--EILAFSLNRLRTSIVFFAAFPL--LIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSD 374 (725)
Q Consensus 304 ll~LL~~ltd~--~~l~~~L~~l~~llpy~~~f~k--l~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~~~ 374 (725)
...||++++|+ +++..+|.=+..+ +.-++ -.++|++.++.++....--++.-+=++||+||......
T Consensus 379 f~tLL~tLsd~sd~vvl~~L~lla~i----~~s~~~~~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE 449 (675)
T KOG0212|consen 379 FLTLLKTLSDRSDEVVLLALSLLASI----CSSSNSPNLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAE 449 (675)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHHHH----hcCcccccHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHH
Confidence 45678888774 3444444333321 11111 34899999999999866667778889999999977653
No 30
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.34 E-value=5.2e+02 Score=31.55 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhhcCCcH--------HHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHH
Q 004881 297 IKSYLRSTLFMLNQATDS--------EILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVA 368 (725)
Q Consensus 297 iKsyl~sll~LL~~ltd~--------~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~ 368 (725)
-++|+..+.+++.+.+.. .+..-+++.|...+|+|- +.-.+++.+|.+-+.+...++..+-.+++.++
T Consensus 277 Yk~ylQkLe~~vK~~~~~~~~~v~l~~vav~c~~~Ll~a~pHFN----~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf 352 (704)
T KOG2153|consen 277 YKSYLQKLEQFVKDLSLRTPQQVSLAQVAVQCACELLEAVPHFN----LRQKIVKLVVRLINDPGRPVSSGCIQTIKTLF 352 (704)
T ss_pred HHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHhhhhcc----HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHh
Confidence 356777777777777221 222234444444444444 45566777777777777778888888888887
Q ss_pred hcc
Q 004881 369 SGF 371 (725)
Q Consensus 369 ~~~ 371 (725)
..-
T Consensus 353 ~~D 355 (704)
T KOG2153|consen 353 END 355 (704)
T ss_pred cCC
Confidence 753
No 31
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=51.63 E-value=33 Score=40.74 Aligned_cols=93 Identities=17% Similarity=0.176 Sum_probs=66.5
Q ss_pred hhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcch--HHHHHHHHHHHHHhhccccCccchhhhHH
Q 004881 327 SIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDC--FDLCLIKMYKAFIGHCKFAEPALFKHLQF 404 (725)
Q Consensus 327 llpy~~~f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~~~~--le~~LK~~Y~ayv~~~k~t~~~tl~~Inf 404 (725)
+-.|+-.||.|...-+.+++.|.-..+..||+.|.=-|=.+|..-+..+ +-.||-++.. ..--.-++.
T Consensus 46 I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~----------tdd~~E~~~ 115 (556)
T PF05918_consen 46 IPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQ----------TDDPVELDA 115 (556)
T ss_dssp HHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT-------------HHHHHH
T ss_pred HHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHh----------cccHHHHHH
Confidence 4568999999999999999999998888899999877777777643222 3344544433 244456788
Q ss_pred HHHHHHHHhcCCccchhHHHHHHHH
Q 004881 405 LRNSFVELCSQDLLRSSNKAKVSIN 429 (725)
Q Consensus 405 MkNs~~EL~~lD~~~sYq~AF~yIR 429 (725)
.+|++++|+-+|+..+-.-.|.-|.
T Consensus 116 v~~sL~~ll~~d~k~tL~~lf~~i~ 140 (556)
T PF05918_consen 116 VKNSLMSLLKQDPKGTLTGLFSQIE 140 (556)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 8999999999999999999998886
No 32
>KOG3871 consensus Cell adhesion complex protein bystin [Extracellular structures]
Probab=46.34 E-value=22 Score=39.77 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=14.8
Q ss_pred CCcchhh-hhhhHhhhchHHHHHHHHhHH
Q 004881 1 MGKLGKK-ARKFAKKNLQSVLKRKRKIKS 28 (725)
Q Consensus 1 m~k~~K~-tkKF~~k~L~~~~~~rk~~k~ 28 (725)
||+++|+ .+|-..-.|-+-|..-+..++
T Consensus 1 m~~~~k~~~~~~~~~pl~kdl~a~~va~~ 29 (449)
T KOG3871|consen 1 MARMKKAKDRKQRHAPLLKDLAAGQVAKK 29 (449)
T ss_pred CCCcccCccchhccCchhhhhHHHhhhhh
Confidence 7888776 444333355555555444333
No 33
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=46.10 E-value=16 Score=42.08 Aligned_cols=13 Identities=15% Similarity=0.335 Sum_probs=6.3
Q ss_pred ccCCchhhhccCC
Q 004881 63 IEDMSLEAIFSED 75 (725)
Q Consensus 63 ~~~msvd~ff~~~ 75 (725)
...|.+-.-++++
T Consensus 213 l~sm~~ae~~~~d 225 (620)
T COG4547 213 LGSMDMAEETGDD 225 (620)
T ss_pred hcccccccccCCC
Confidence 3445554445544
No 34
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=46.05 E-value=2.4e+02 Score=27.49 Aligned_cols=122 Identities=12% Similarity=0.028 Sum_probs=64.7
Q ss_pred HHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchHHHHHHHH
Q 004881 304 TLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKM 383 (725)
Q Consensus 304 ll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~~~~le~~LK~~ 383 (725)
+-.+++.+|. +.+..+...+.. ++..-+.....+++.++..|-....-+.. |..|-.......+.+...++..+
T Consensus 4 v~~~lnkLs~-~n~~~~~~~l~~---~~~~~~~~~~~l~~~i~~~~~~~~~~~~~--ya~L~~~l~~~~~~f~~~ll~~~ 77 (200)
T smart00543 4 VKGLINKLSP-SNFESIIKELLK---LNNSDKNLRKYILELIFEKAVEEPNFIPA--YARLCALLNAKNPDFGSLLLERL 77 (200)
T ss_pred HHHHHhhCCH-HHHHHHHHHHHH---HHccCHHHHHHHHHHHHHHHHcCcchHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677774 344444444443 23344678888999999888775543332 22222222222246777788888
Q ss_pred HHHHHhhccccCccchhhhHHHHHHHHHHhcCCccchhHHHHHHHHHHH
Q 004881 384 YKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLS 432 (725)
Q Consensus 384 Y~ayv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yIRQLA 432 (725)
+..|-..........+....-.-+.++|||....-... ..|..|++|-
T Consensus 78 ~~~f~~~~e~~~~~~~~~~~~~i~fl~eL~~~~~i~~~-~i~~~l~~ll 125 (200)
T smart00543 78 QEEFEKGLESEEESDKQRRLGLVRFLGELYNFQVLTSK-IILELLKELL 125 (200)
T ss_pred HHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHcccCcHH-HHHHHHHHHH
Confidence 88776642222222333333344566788776543222 4555555554
No 35
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=45.81 E-value=1.3e+02 Score=29.81 Aligned_cols=84 Identities=15% Similarity=0.253 Sum_probs=59.9
Q ss_pred chhhhHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchHHHHHH--------HHHHHHhhcCCCchhHHHHH
Q 004881 290 WKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRL--------IKIAVHLWATGEETVSFHSF 361 (725)
Q Consensus 290 w~kl~~liKsyl~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~kl~k~l--------lK~lv~lWst~~e~vrv~AF 361 (725)
|..+..--..++..++.+|++-....+....+..+..++.+...+|-+.|++ +..++.+-.. ..+...+.
T Consensus 58 ~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l 135 (165)
T PF08167_consen 58 WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETAL 135 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHH
Confidence 6667667778899999999997778899999999999999999999988775 3334443332 23444444
Q ss_pred HHHHHHHhccCcch
Q 004881 362 LILQDVASGFSSDC 375 (725)
Q Consensus 362 l~Lr~l~~~~~~~~ 375 (725)
-+|..+...++..|
T Consensus 136 ~~L~~ll~~~ptt~ 149 (165)
T PF08167_consen 136 DALATLLPHHPTTF 149 (165)
T ss_pred HHHHHHHHHCCccc
Confidence 55555555555443
No 36
>KOG3165 consensus Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=43.61 E-value=20 Score=36.05 Aligned_cols=26 Identities=46% Similarity=0.574 Sum_probs=17.7
Q ss_pred CCcchhhhhhhHh-hhchHHHHHHHHhHH
Q 004881 1 MGKLGKKARKFAK-KNLQSVLKRKRKIKS 28 (725)
Q Consensus 1 m~k~~K~tkKF~~-k~L~~~~~~rk~~k~ 28 (725)
|||. |||+||+- ||+.++. +|.+.++
T Consensus 1 mgk~-kktrk~~~vk~~i~~k-~~~~~~d 27 (195)
T KOG3165|consen 1 MGKA-KKTRKFAVVKRMIKTK-QRLKKKD 27 (195)
T ss_pred CCcc-cchHHHHHHHHHHHHH-HHHHHHH
Confidence 8886 47899994 6777666 5544444
No 37
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=42.35 E-value=3.1e+02 Score=30.65 Aligned_cols=117 Identities=11% Similarity=0.172 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHHHhhcCCcHHHHHHHHHHh------hhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHH
Q 004881 294 RPLIKSYLRSTLFMLNQATDSEILAFSLNRL------RTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDV 367 (725)
Q Consensus 294 ~~liKsyl~sll~LL~~ltd~~~l~~~L~~l------~~llpy~~~f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l 367 (725)
+.-+.-||.-++.-|-.-++.++-...|.+| ++++|||+.|-. -.+ + +++
T Consensus 192 sKELq~YF~kvisal~dEs~~~~r~aAl~sLr~dsGlhQLvPYFi~f~~--eqi--------------t--------~Nl 247 (450)
T COG5095 192 SKELQMYFDKVISALLDESDEQTRDAALESLRNDSGLHQLVPYFIHFFN--EQI--------------T--------KNL 247 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHH--HHH--------------H--------Hhh
Confidence 3344567777777775567777766677765 469999999853 111 1 111
Q ss_pred HhccCcchHHHHHHHHHHHHHhhc-cccCccchhhhHHHHHHHHH-HhcCCccchhHHHHHHHHHHHHHHHHhhhh
Q 004881 368 ASGFSSDCFDLCLIKMYKAFIGHC-KFAEPALFKHLQFLRNSFVE-LCSQDLLRSSNKAKVSINNLSRILQLGLQT 441 (725)
Q Consensus 368 ~~~~~~~~le~~LK~~Y~ayv~~~-k~t~~~tl~~InfMkNs~~E-L~~lD~~~sYq~AF~yIRQLAIhLRnai~~ 441 (725)
..-..=+.+--||.++++|- =|+.|---..+--.-.|++- =.|-+|+- |-|--.|.+|..|-.-+-.
T Consensus 248 ----~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~d---he~~alRd~AA~ll~yV~~ 316 (450)
T COG5095 248 ----KNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDD---HEHYALRDVAADLLKYVFS 316 (450)
T ss_pred ----hhHHHHHHHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcc---hhHHHHHHHHHHHHHHHHh
Confidence 01011112225777777764 35554333333333455553 34444443 7777888888777654433
No 38
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=41.28 E-value=84 Score=30.07 Aligned_cols=67 Identities=15% Similarity=0.275 Sum_probs=46.7
Q ss_pred HHHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchHHHHHH-H-HHHHHhhcCCCchhHHHHHHHHHHHHh
Q 004881 303 STLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRL-I-KIAVHLWATGEETVSFHSFLILQDVAS 369 (725)
Q Consensus 303 sll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~kl~k~l-l-K~lv~lWst~~e~vrv~AFl~Lr~l~~ 369 (725)
.|+++|..-+|+.++++.+.-|..++.++=.-+.++..+ . -.+..+-+.++..||--|-+++.+++.
T Consensus 47 ~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 47 KLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 455677666789999999999999888874433443221 1 245667788888899999999998865
No 39
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=41.12 E-value=5.1e+02 Score=28.29 Aligned_cols=210 Identities=12% Similarity=0.008 Sum_probs=100.0
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchHHHH
Q 004881 300 YLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLC 379 (725)
Q Consensus 300 yl~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~~~~le~~ 379 (725)
-+..++.++..=++...+...+..+...+.++ -..+.+.+++.+..=.+.....+|-+-|.++..+.......-....
T Consensus 23 i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~--~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~ 100 (339)
T PF12074_consen 23 IVQGLSPLLSKESNEAALSALLSALFKHLFFL--SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKF 100 (339)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh--CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHH
Confidence 34556667777777777777777776655555 2334455555555534444455888888877776651111112222
Q ss_pred HHHHHHHHHhhccccCccchhhhHHHHHHHHHHhcCCccchhHHHHHHHH----------HHHHHHHHhhhhhhhhhhh-
Q 004881 380 LIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSIN----------NLSRILQLGLQTKKKEAVK- 448 (725)
Q Consensus 380 LK~~Y~ayv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yIR----------QLAIhLRnai~~k~Kea~k- 448 (725)
...+.-.++...+.+..+.+|.. +...+-.||+++- + .....+++....|.+|-
T Consensus 101 ~~~~~~~L~~~~~~~~~~p~~~~--------------~~~~~~~a~~~l~~~~~~~~~~~~-~~~~~~~l~~~~kps~ll 165 (339)
T PF12074_consen 101 AEPFLPKLLQSLKEASANPLQSA--------------QNGELVGAYVLLALSSWKLDKIDS-KNISFWSLALDPKPSFLL 165 (339)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcc--------------ccccHHHHHHHHHhccccchhhhh-hhhhhhhhccCCCcchhc
Confidence 22222222222222211111111 1122334444443 1 33333444433333321
Q ss_pred --hcccc-----hhHhHHHHHHHHHcccCCCCCccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHhccCccee
Q 004881 449 --KICSW-----QYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIP 521 (725)
Q Consensus 449 --~VYNW-----QfvhsL~~Ws~VLs~~~~~s~L~pLiYPLVQVi~G~irLiPt~ryfPLRfh~ir~L~~Ls~~t~~fIP 521 (725)
.||+= -.+..+++-..++..+... ....-..|+-|..+.++-- |+ -=.+.|-+++..|-++.......
T Consensus 166 ~~kvyskl~~~~d~~w~~~al~~~~~~~~~~-~~~~~~~~~~~a~i~ll~s-~~-~~~~vR~~A~~~l~~l~~~~~~~-- 240 (339)
T PF12074_consen 166 SEKVYSKLASEEDLCWLLRALEALLSDHPSE-LSSDKSSAWAQAFIYLLCS-SN-VSWKVRRAALSALKKLYASNPEL-- 240 (339)
T ss_pred CHHHHhccCCHhHHHHHHHHHHHHHhcchhh-hhhhHHHHHHHHHHHHHHc-CC-CCHHHHHHHHHHHHHHHHhChHH--
Confidence 11211 0222333334444433211 1111134455544443321 21 14568999999999998877766
Q ss_pred chhHHHHhhc
Q 004881 522 VTSLMLDVLE 531 (725)
Q Consensus 522 l~p~LleiL~ 531 (725)
+...|++-|.
T Consensus 241 l~~~li~~l~ 250 (339)
T PF12074_consen 241 LSKSLISGLW 250 (339)
T ss_pred HHHHHHHHHH
Confidence 6666666665
No 40
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=39.94 E-value=4.1e+02 Score=33.14 Aligned_cols=118 Identities=14% Similarity=0.170 Sum_probs=82.6
Q ss_pred hhhHHHHHHHHHHHHHhhcC-CcHH--------------------------------HHHHHHHHhhhhhhhhhcchHHH
Q 004881 292 TVRPLIKSYLRSTLFMLNQA-TDSE--------------------------------ILAFSLNRLRTSIVFFAAFPLLI 338 (725)
Q Consensus 292 kl~~liKsyl~sll~LL~~l-td~~--------------------------------~l~~~L~~l~~llpy~~~f~kl~ 338 (725)
-...||..||.=.-.++... ++.. |+..+|+.+....||.-.--...
T Consensus 416 vAnrLi~iYF~lFk~l~~~~~~d~~k~~k~~~k~kks~k~~k~e~~~~e~~~e~nsrllSAlLTGvNRAfPfaq~~ddk~ 495 (988)
T KOG2038|consen 416 VANRLISIYFSLFKTLVGKKDKDNRKDDKGAAKKKKSNKKDKKEEVSTESPIELNSRLLSALLTGVNRAFPFAQTADDKL 495 (988)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhcccccccchhhhhcccchhhhhHHHHHHHHhcccccCCcccCchHHH
Confidence 34678888888776666443 3333 99999999999999988877677
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhhccccCccchhhhHHHHHHHH
Q 004881 339 RRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFV 410 (725)
Q Consensus 339 k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~ayv~~~k~t~~~tl~~InfMkNs~~ 410 (725)
..=+++|..|--+++=.|.|.|...|-.+.... .-+-+.-.++.|+.++-+.=-++...--.+|+|-.++.
T Consensus 496 ~~~~~tLFkl~HssNFNTsVQaLmLlfQvs~~~-~~vSDRyY~aLY~kLLdP~l~~sSKq~m~LnLlykslK 566 (988)
T KOG2038|consen 496 EEQMKTLFKLTHSSNFNTSVQALMLLFQVSKKN-DYVSDRYYRALYRKLLDPRLMNSSKQAMFLNLLYKSLK 566 (988)
T ss_pred HHHhHHHHHHHhhcccchhHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhcCcccCchHHHHHHHHHHHHHHH
Confidence 788888888877777778899988888877653 44456667777777665432222222334666665554
No 41
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=38.81 E-value=5.4e+02 Score=34.45 Aligned_cols=239 Identities=18% Similarity=0.147 Sum_probs=115.1
Q ss_pred hhhhhcchHHHHHHHHHHHHhhcCCC--chhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH-hhcc--ccCccchhhh
Q 004881 328 IVFFAAFPLLIRRLIKIAVHLWATGE--ETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFI-GHCK--FAEPALFKHL 402 (725)
Q Consensus 328 lpy~~~f~kl~k~llK~lv~lWst~~--e~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~ayv-~~~k--~t~~~tl~~I 402 (725)
.|=.-+-..++..|.+.+|+..+.-. -++|++|-=.|-.|+........+.-|-. +-| ++.. .-+++..+ +
T Consensus 616 ~PEWPatE~ILs~Lg~~Lv~~~s~ks~~~sir~asLdlLG~IaarLrkd~v~s~l~~---g~v~~~~~~~s~~~~~~k-~ 691 (1692)
T KOG1020|consen 616 LPEWPATELILSLLGKLLVHNFSNKSVDVSIRTASLDLLGTIAARLRKDAVLSKLEQ---GSVDRELDQDSEEKHNIK-L 691 (1692)
T ss_pred CCcCccHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccchhhhhhcccccccch-h
Confidence 45555556788999999999998643 36888887776666654433322221111 111 1111 11233333 3
Q ss_pred HHHHHHHHHHhcCCc-cchhHHHHH---HH----HHHHHHHHHhhhhhh-hhhhhhcccchhHhHHHHHHHHHcccCCCC
Q 004881 403 QFLRNSFVELCSQDL-LRSSNKAKV---SI----NNLSRILQLGLQTKK-KEAVKKICSWQYANCIDLWVTYISHCIHDY 473 (725)
Q Consensus 403 nfMkNs~~EL~~lD~-~~sYq~AF~---yI----RQLAIhLRnai~~k~-Kea~k~VYNWQfvhsL~~Ws~VLs~~~~~s 473 (725)
.+.++.+...+.... ..+|...|. || |.++--.+.+|..++ -++=..+..| .++.+|-+-+.+.- .
T Consensus 692 ~~l~~~Lldfl~~~~~~~~~~~v~~~~fyi~~w~~d~~le~~~~~~~~kd~~s~~~~~~~---~~~el~~~~v~~~~--n 766 (1692)
T KOG1020|consen 692 IVLQKTLLDFLKSNTEETALSEVYACHFYIAQWYRDTRLETILIMEENKDVDSNEGTHHW---FSFELAYEKVITVE--N 766 (1692)
T ss_pred hhhHHHHHHHHHHhhhccchhhHHHhhHHHHhHHHHHHHHHHHHHHhccCccccccchhH---HHHHHHHHHHhhhH--H
Confidence 445566665555433 344444332 33 444555555555433 1222222334 44567777666421 1
Q ss_pred CccchHHHHHHHHhh-----hhcccCCCcccchHHHHHHHHHHHHhccCcceechhHHHHhhccccccCCCCCCCCCCcc
Q 004881 474 DLQPLLYIIIQIING-----MATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLEYKVSKEVGKPGKDFNFS 548 (725)
Q Consensus 474 ~L~pLiYPLVQVi~G-----~irLiPt~ryfPLRfh~ir~L~~Ls~~t~~fIPl~p~LleiL~s~~~K~~~~~~k~~Df~ 548 (725)
.++ |=+-+|--+ .-++..+--=+-=-.++.+.|..-+.=+..|=|.+.+|+-+|.....+-..+.+|.+ +
T Consensus 767 ~~K---~~~~~Ik~~~~~~~~~~~~s~~~d~~~a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKcl--S 841 (1692)
T KOG1020|consen 767 ELK---YILSKIKDKEKSGRGPKLNSRFADDDDAKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCL--S 841 (1692)
T ss_pred HHH---HHHHHhcchhhhccCcCCCCccccchhHHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHH--H
Confidence 111 112222111 011111111111224555666665555667777777777777653321111223322 2
Q ss_pred cccccchhhhcchhhHHHH-----------HHHHHHHHHHHHH
Q 004881 549 SAVKLPKHWLKSRNFREDC-----------VFSAIELLSAHFA 580 (725)
Q Consensus 549 ~~lk~~k~~l~t~~~qd~v-----------~~~~~eLL~e~l~ 580 (725)
..+-+++..|..+..|.+| .+.+++|++.|..
T Consensus 842 ~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl 884 (1692)
T KOG1020|consen 842 MIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVL 884 (1692)
T ss_pred HHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhh
Confidence 3455566666666666554 4567788886654
No 42
>PHA02734 coat protein; Provisional
Probab=37.79 E-value=1.1e+02 Score=29.44 Aligned_cols=66 Identities=15% Similarity=0.258 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHhHHHHHHhh
Q 004881 564 REDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKR 633 (725)
Q Consensus 564 qd~v~~~~~eLL~e~l~~~s~sIaFPEl~~p~i~~LKr~~K~~k~~~~~~~lk~Li~kie~n~~~I~~kR 633 (725)
...-...++.+|..|+ +.-|+|||+++ =+.-...+++.+........|+.+|..|.+-.+=.+.+-
T Consensus 8 KgdYagg~~kiL~~F~---~G~iGyPevsL-RLAGEEAn~~~~G~e~~k~aIHeiIK~IreA~kp~rn~g 73 (149)
T PHA02734 8 KGDYAGGAAKILDGFE---AGQLGFPEVSL-KLAGEEANARKAGDANAKAAIHAIIKMIKDAMKPLRNKG 73 (149)
T ss_pred chhHHHHHHHHHHHHH---cCCCCCceeeh-hhhhhHhhhcccChHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 3344456778888885 57899999984 344455666777777888899999999988886665543
No 43
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=37.74 E-value=4.1e+02 Score=34.13 Aligned_cols=35 Identities=23% Similarity=0.462 Sum_probs=29.3
Q ss_pred CcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhh
Q 004881 193 KLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACH 228 (725)
Q Consensus 193 ~~lT~~~v~~W~~~l~~~~sl~alr~lv~AFRaA~~ 228 (725)
+..+.++|++|-..-++ .+..++-.+++-|=.||-
T Consensus 91 k~~i~~lv~~W~e~Yk~-n~~~al~~linf~l~~cG 125 (1048)
T KOG2011|consen 91 KSPIEELVDEWIEDYKE-NRDKALLELINFFLQCCG 125 (1048)
T ss_pred cchHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHhcC
Confidence 44588899999998865 489999999999988873
No 44
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=35.51 E-value=3.8e+02 Score=25.98 Aligned_cols=109 Identities=15% Similarity=0.073 Sum_probs=60.2
Q ss_pred HHHHhhcCCcHHHHHHHHHHhhhhhhhhhc-chHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchHHHHHHH
Q 004881 304 TLFMLNQATDSEILAFSLNRLRTSIVFFAA-FPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIK 382 (725)
Q Consensus 304 ll~LL~~ltd~~~l~~~L~~l~~llpy~~~-f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~~~~le~~LK~ 382 (725)
+-.+|+.+|+..+- .++..+.. ++.. -+...+.+++.++..|......+.+.|=+| ..+....+..|...++..
T Consensus 4 v~~~lnklt~~n~~-~~~~~l~~---~~~~~~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~-~~l~~~~~~~f~~~ll~~ 78 (209)
T PF02854_consen 4 VRGILNKLTPSNFE-SIIDELIK---LNWSDDPETLKEIVKLIFEKAVEEPNFSPLYARLC-AALNSRFPSEFRSLLLNR 78 (209)
T ss_dssp HHHHHHHCSSTTHH-HHHHHHHH---HHHHSCHHHHHHHHHHHHHHHHHSGGGHHHHHHHH-HHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHH-HHHHHHHH---HHhhccHHHHHHHHHHHhhhhhcCchHHHHHHHHH-HHHhccchhhHHHHHHHH
Confidence 44566777754332 23333332 2333 477888899999888887665555444333 224444435788888888
Q ss_pred HHHHHHhhc-----cccCccchhhhHHHHHHHHHHhcCCc
Q 004881 383 MYKAFIGHC-----KFAEPALFKHLQFLRNSFVELCSQDL 417 (725)
Q Consensus 383 ~Y~ayv~~~-----k~t~~~tl~~InfMkNs~~EL~~lD~ 417 (725)
++..|-... ............-.-.-++|||....
T Consensus 79 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~fl~eL~~~~v 118 (209)
T PF02854_consen 79 CQEEFEERYSNEELEENRQSSKQRRRGNIRFLAELFNFGV 118 (209)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHhhhhhHHHhhHhhcc
Confidence 888888722 11111222222233345667776543
No 45
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=33.92 E-value=50 Score=39.75 Aligned_cols=14 Identities=21% Similarity=0.396 Sum_probs=8.0
Q ss_pred HHHHHHHhhhcccC
Q 004881 220 LNAYRAACHYGAES 233 (725)
Q Consensus 220 v~AFRaA~~~~~e~ 233 (725)
+.+|.-|...+.++
T Consensus 221 ~~~y~La~~l~r~~ 234 (622)
T PF02724_consen 221 VLMYELASSLGRDD 234 (622)
T ss_pred HHHHHHHHHhCCCc
Confidence 44566666666543
No 46
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=33.75 E-value=2.9e+02 Score=28.20 Aligned_cols=82 Identities=17% Similarity=0.173 Sum_probs=65.1
Q ss_pred chhhhHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhh---hhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHH
Q 004881 290 WKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRT---SIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQD 366 (725)
Q Consensus 290 w~kl~~liKsyl~sll~LL~~ltd~~~l~~~L~~l~~---llpy~~~f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~ 366 (725)
-.++...|+.-=..+++.|..-++..++.-+|+-+.. ..||=-.-+.++..+++.+-.+....+-++|++++.|+.-
T Consensus 92 S~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~ 171 (182)
T PF13251_consen 92 SSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGA 171 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 3567888888888899999888888888887776654 5677666677888888888888888888899999999987
Q ss_pred HHhcc
Q 004881 367 VASGF 371 (725)
Q Consensus 367 l~~~~ 371 (725)
+....
T Consensus 172 l~s~~ 176 (182)
T PF13251_consen 172 LLSVQ 176 (182)
T ss_pred HHcCC
Confidence 76543
No 47
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.29 E-value=2.6e+02 Score=34.54 Aligned_cols=98 Identities=14% Similarity=0.222 Sum_probs=58.7
Q ss_pred CcHHHHHHHHHHhhhhhhhhh-cchH-HHH-HHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchHHHH-HHHHHHHH
Q 004881 312 TDSEILAFSLNRLRTSIVFFA-AFPL-LIR-RLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLC-LIKMYKAF 387 (725)
Q Consensus 312 td~~~l~~~L~~l~~llpy~~-~f~k-l~k-~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~~~~le~~-LK~~Y~ay 387 (725)
|++.+=-..++.|...+-|.- -|-+ .-| -++.+++..|..++..++++||-||.+|+..+ ..+++.- ...+|.-+
T Consensus 186 ~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~Ly-Y~~m~~yM~~alfait 264 (859)
T KOG1241|consen 186 TSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLY-YEFMEPYMEQALFAIT 264 (859)
T ss_pred CchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 444444445556655555543 2222 122 35567889999999999999999999999876 3333332 22244444
Q ss_pred HhhccccC-ccchhhhHHHHHHHH
Q 004881 388 IGHCKFAE-PALFKHLQFLRNSFV 410 (725)
Q Consensus 388 v~~~k~t~-~~tl~~InfMkNs~~ 410 (725)
+..-|..+ .-.+.+|.|-.+-.-
T Consensus 265 l~amks~~deValQaiEFWstice 288 (859)
T KOG1241|consen 265 LAAMKSDNDEVALQAIEFWSTICE 288 (859)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHH
Confidence 44444332 246778888765443
No 48
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=30.96 E-value=30 Score=44.08 Aligned_cols=65 Identities=22% Similarity=0.234 Sum_probs=0.0
Q ss_pred CccCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHhhcCChhhhHhhhhhC
Q 004881 77 SDEDEGDVDVDDSGSDGYLSEDSNCLPIAESEIHLGENGAAGKPSAQNQEILLELENKKKKLSRLKAKDPGFSKFLESHD 156 (725)
Q Consensus 77 ~~~~~~~~~~~~s~s~~~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~hk~~L~~LkekDPEFyKyL~enD 156 (725)
|..+|++..+|+.|+|+++++|+|+..++++|| +++++.+++.
T Consensus 1729 ef~GEed~~Dddnddddddd~EaEdddDddDdD--------------deD~d~~aea----------------------- 1771 (3015)
T KOG0943|consen 1729 EFAGEEDHHDDDNDDDDDDDAEAEDDDDDDDDD--------------DEDMDLDAEA----------------------- 1771 (3015)
T ss_pred cccCcccccccccccccccchhhcccccccccc--------------ccccccchhh-----------------------
Q ss_pred ccccCCCCCCCCCccccccccccCCCCCCCC
Q 004881 157 KGLKSFRNENAYSDEDERSDDGMQSMDEDGP 187 (725)
Q Consensus 157 ~eLL~F~~~~~~~d~de~~~de~~~~~~~~~ 187 (725)
..++++|+++++..++..-+++
T Consensus 1772 ---------~aEdEe~eEgdeheQDeqvege 1793 (3015)
T KOG0943|consen 1772 ---------AAEDEEDEEGDEHEQDEQVEGE 1793 (3015)
T ss_pred ---------hhcccccccccccccccccccc
No 49
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.71 E-value=4.4e+02 Score=33.98 Aligned_cols=336 Identities=17% Similarity=0.205 Sum_probs=182.2
Q ss_pred CcchhhhHHHHHHHHHHHHHhhcC---CcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhh----cCC--CchhHH
Q 004881 288 SKWKTVRPLIKSYLRSTLFMLNQA---TDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLW----ATG--EETVSF 358 (725)
Q Consensus 288 ~kw~kl~~liKsyl~sll~LL~~l---td~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lW----st~--~e~vrv 358 (725)
.-|++++.+ +-++++.|..+ .|++.+..+|..+.. ++...|++++..+..++.+- ... ++.+|.
T Consensus 195 ~~~~~~~~l----lP~~l~vl~~~i~~~d~~~a~~~l~~l~E---l~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~ 267 (1075)
T KOG2171|consen 195 SEVDKFRDL----LPSLLNVLQEVIQDGDDDAAKSALEALIE---LLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRH 267 (1075)
T ss_pred HHHHHHHHH----hHHHHHHhHhhhhccchHHHHHHHHHHHH---HHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 344444444 45555555444 445666767666654 56788888888877777655 333 357999
Q ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHHHhhccccCccchhhhHHHHHHHHHHhc-----------CC-ccchhHHHHH
Q 004881 359 HSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCS-----------QD-LLRSSNKAKV 426 (725)
Q Consensus 359 ~AFl~Lr~l~~~~~~~~le~~LK~~Y~ayv~~~k~t~~~tl~~InfMkNs~~EL~~-----------lD-~~~sYq~AF~ 426 (725)
.|--+|-.++...+ ..||.-.+-.-+.+--+--+.+|+-. -| .+.-|.+|=.
T Consensus 268 ~ALe~ivs~~e~Ap----------------~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~ 331 (1075)
T KOG2171|consen 268 LALEFLVSLSEYAP----------------AMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQ 331 (1075)
T ss_pred HHHHHHHHHHHhhH----------------HHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHH
Confidence 88777766554321 12222222222223223333333322 12 2568999999
Q ss_pred HHHHHHHHHHHhhhh-h---hhhhhhhcccchhHhHHHHHHHHHcccCCCCCccchHHHHHHHHhhhhcccCCCcccchH
Q 004881 427 SINNLSRILQLGLQT-K---KKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLR 502 (725)
Q Consensus 427 yIRQLAIhLRnai~~-k---~Kea~k~VYNWQfvhsL~~Ws~VLs~~~~~s~L~pLiYPLVQVi~G~irLiPt~ryfPLR 502 (725)
.|=.||.||=....- . --+.+-.=-+|+|-|+-=+=-.|++.-|++ .+.+.+-+++++++.-++= |.+| -|
T Consensus 332 ~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~-~m~~~l~~Il~~Vl~~l~D-phpr---Vr 406 (1075)
T KOG2171|consen 332 ALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSD-VMIGNLPKILPIVLNGLND-PHPR---VR 406 (1075)
T ss_pred HHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHH-HHHHHHHHHHHHHHhhcCC-CCHH---HH
Confidence 999999999744331 1 123444456999999987777788776653 5777888888888765543 5554 35
Q ss_pred HHHHHHHHHHHhccCccee---------chhHHHHhhccccccCC--CCCCCCCCcccccccchhhh-------------
Q 004881 503 CKCIEWLNHLSSSSGIFIP---------VTSLMLDVLEYKVSKEV--GKPGKDFNFSSAVKLPKHWL------------- 558 (725)
Q Consensus 503 fh~ir~L~~Ls~~t~~fIP---------l~p~LleiL~s~~~K~~--~~~~k~~Df~~~lk~~k~~l------------- 558 (725)
.-++-++-++|. .|-| +.|.|+.+|++...-+- ....--++|. -.++++.+
T Consensus 407 ~AA~naigQ~st---dl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~--E~~~~~~l~pYLd~lm~~~l~ 481 (1075)
T KOG2171|consen 407 YAALNAIGQMST---DLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFS--EECDKSILEPYLDGLMEKKLL 481 (1075)
T ss_pred HHHHHHHHhhhh---hhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHH--HhCcHHHHHHHHHHHHHHHHH
Confidence 556666655554 3333 34567777776432110 0000011111 12222221
Q ss_pred -----cchhhHHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHhHHHHHHhh
Q 004881 559 -----KSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKR 633 (725)
Q Consensus 559 -----~t~~~qd~v~~~~~eLL~e~l~~~s~sIaFPEl~~p~i~~LKr~~K~~k~~~~~~~lk~Li~kie~n~~~I~~kR 633 (725)
+++..|+.++..+.. +..+.--.|=.++--++-.|+.++.++... -.+.|-.|.-+.+.-|...=
T Consensus 482 ~L~~~~~~~v~e~vvtaIas------vA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~----d~r~LrgktmEcisli~~AV 551 (1075)
T KOG2171|consen 482 LLLQSSKPYVQEQAVTAIAS------VADAAQEKFIPYFDRLMPLLKNFLQNADDK----DLRELRGKTMECLSLIARAV 551 (1075)
T ss_pred HHhcCCchhHHHHHHHHHHH------HHHHHhhhhHhHHHHHHHHHHHHHhCCCch----hhHHHHhhHHHHHHHHHHHh
Confidence 233333333322111 112223345455445666899999887743 23455555666666666665
Q ss_pred cCCCCCCCCHHHHHHHHHh---hhcCCCCchHHHHHH
Q 004881 634 DEVAFSPNDQQSVEAFLQL---EKCSGNTPFTQYYRS 667 (725)
Q Consensus 634 ~~v~F~P~d~~~V~~Fl~~---~~~~~~tPL~~y~~~ 667 (725)
.+-.|.|--..=++--+.. +. ...-|+..|.-+
T Consensus 552 Gke~F~~~a~eliqll~~~~~~~~-~~dd~~~sy~~~ 587 (1075)
T KOG2171|consen 552 GKEKFLPLAEELIQLLLELQGSDQ-DDDDPLRSYMIA 587 (1075)
T ss_pred hhhhhhHhHHHHHHHHHhhcccch-hhccccHHHHHH
Confidence 5666888654333333322 12 345677777554
No 50
>COG5117 NOC3 Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis / Intracellular trafficking and secretion]
Probab=30.07 E-value=8.9e+02 Score=28.59 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=19.4
Q ss_pred CcchhhhHHHHHHHHHHHHHhhcCCcHHHHH
Q 004881 288 SKWKTVRPLIKSYLRSTLFMLNQATDSEILA 318 (725)
Q Consensus 288 ~kw~kl~~liKsyl~sll~LL~~ltd~~~l~ 318 (725)
..|.-=+.+++.|.+-+-.|...+.+++++.
T Consensus 211 ~l~~yeqsLl~~Y~~yi~tl~~~~k~~S~~~ 241 (657)
T COG5117 211 HLKDYEQSLLRWYTSYIKTLVDDVKDESTLD 241 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 3566567788877766666666565554443
No 51
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.95 E-value=5.7e+02 Score=31.88 Aligned_cols=277 Identities=16% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchHHHHHH
Q 004881 302 RSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLI 381 (725)
Q Consensus 302 ~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~~~~le~~LK 381 (725)
++++.+|..+.+++++.-..-.+++.+-+=-+| ||--|+++|-.|-..+ ...+...=-
T Consensus 117 G~TLRFLckLkE~ELlepl~p~IracleHrhsY---------------------VRrNAilaifsIyk~~-~~L~pDape 174 (948)
T KOG1058|consen 117 GSTLRFLCKLKEPELLEPLMPSIRACLEHRHSY---------------------VRRNAILAIFSIYKNF-EHLIPDAPE 174 (948)
T ss_pred chhhhhhhhcCcHHHhhhhHHHHHHHHhCcchh---------------------hhhhhheeehhHHhhh-hhhcCChHH
Q ss_pred HHHHHHHh----hccccCccchhhhHHHHHHHHHHhcCCccchhHHHHHHHHHHH---HHHHHhhhhhhhhhhhhccc--
Q 004881 382 KMYKAFIG----HCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLS---RILQLGLQTKKKEAVKKICS-- 452 (725)
Q Consensus 382 ~~Y~ayv~----~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yIRQLA---IhLRnai~~k~Kea~k~VYN-- 452 (725)
-+|..+++ +||. |.++-|+.+|+..|-..+-.-|-|.- -.|.-++. |-++.|++
T Consensus 175 Li~~fL~~e~DpsCkR-------------NAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViV----E~Irkv~~~~ 237 (948)
T KOG1058|consen 175 LIESFLLTEQDPSCKR-------------NAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIV----ELIRKVCLAN 237 (948)
T ss_pred HHHHHHHhccCchhHH-------------HHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHH----HHHHHHHhcC
Q ss_pred ----chhHhHHHHHHHHHcccC-----------CCCCccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHhccC
Q 004881 453 ----WQYANCIDLWVTYISHCI-----------HDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSG 517 (725)
Q Consensus 453 ----WQfvhsL~~Ws~VLs~~~-----------~~s~L~pLiYPLVQVi~G~irLiPt~ryfPLRfh~ir~L~~Ls~~t~ 517 (725)
=+|+.|| ..-.-|... .=|+--.++-|-++-.+-.+-=.|--+-.-.-+-.+..|. +.+-+
T Consensus 238 p~~~~~~i~~i--~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~--~~~~~ 313 (948)
T KOG1058|consen 238 PAEKARYIRCI--YNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELK--ALHEK 313 (948)
T ss_pred HHHhhHHHHHH--HHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHh--hhhHH
Q ss_pred cceechhHHHHhhccccccCCCCC----------------CCCCCcccccccchhhhcchhhHHHHHHHHHHHHHHHHHH
Q 004881 518 IFIPVTSLMLDVLEYKVSKEVGKP----------------GKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQ 581 (725)
Q Consensus 518 ~fIPl~p~LleiL~s~~~K~~~~~----------------~k~~Df~~~lk~~k~~l~t~~~qd~v~~~~~eLL~e~l~~ 581 (725)
.+--+.-=+|.+|++...--.++. ..-+-++.+=-.+...-.+..||..++. ++
T Consensus 314 il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLik----------ti 383 (948)
T KOG1058|consen 314 ILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIK----------TI 383 (948)
T ss_pred HHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHH----------HH
Q ss_pred hhcCCccccchhHHHHHHHhhhhhcchH--------------HHHHHHHHHHHHHHHhHHHHHH
Q 004881 582 WSYHISFPELATIPLIHLRKFQEKSDVE--------------SLRRVVKRFIDVVEQNIEFVKK 631 (725)
Q Consensus 582 ~s~sIaFPEl~~p~i~~LKr~~K~~k~~--------------~~~~~lk~Li~kie~n~~~I~~ 631 (725)
+++.|-|||++.-+|..|=.|+-..... +|-..=..+++++-+....|+.
T Consensus 384 h~cav~Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~irS 447 (948)
T KOG1058|consen 384 HACAVKFPEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASIIEKLLETFPQIRS 447 (948)
T ss_pred HHHhhcChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhhhhcc
No 52
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=29.13 E-value=3.7e+02 Score=27.05 Aligned_cols=90 Identities=14% Similarity=0.152 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCc
Q 004881 294 RPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSS 373 (725)
Q Consensus 294 ~~liKsyl~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~~ 373 (725)
..++-.|+..++.+. .-++..+-...+.-+.-++..=+..|+. .+-.++.+=++++..+|-.|+-.++.+...+++
T Consensus 3 s~l~Qryl~~Il~~~-~~~~~~vr~~Al~~l~~il~qGLvnP~~---cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 3 SALVQRYLKNILELC-LSSDDSVRLAALQVLELILRQGLVNPKQ---CVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHhcCCCChHH---HHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 357888999999954 3455555555555555555555566653 455666677888889999999999999988754
Q ss_pred chHHHHHHHHHHHH
Q 004881 374 DCFDLCLIKMYKAF 387 (725)
Q Consensus 374 ~~le~~LK~~Y~ay 387 (725)
-+.-....++=.+|
T Consensus 79 ~v~~~~~~gi~~af 92 (187)
T PF12830_consen 79 LVESRYSEGIRLAF 92 (187)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444444444
No 53
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=28.21 E-value=2.2e+02 Score=30.41 Aligned_cols=75 Identities=16% Similarity=0.209 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHHHhhcC-CcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 004881 294 RPLIKSYLRSTLFMLNQA-TDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVAS 369 (725)
Q Consensus 294 ~~liKsyl~sll~LL~~l-td~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~ 369 (725)
...|+.|+.-++..+..- -|+.+....|+-|.++. ---.+..+....+-.++++|++|++.+|+.+--+|-+|+.
T Consensus 88 ~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLt-v~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 88 QEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLT-VTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccC-CCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 456789988888875443 35667667777787753 1223345667788899999999999888777777766655
No 54
>PHA02458 A protein A*; Reviewed
Probab=27.95 E-value=1.2e+02 Score=32.16 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=39.2
Q ss_pred chHHHHHHHHHHHHHhhccccCccchhhhHHHHHHHHHHhcC--CccchhHHH
Q 004881 374 DCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQ--DLLRSSNKA 424 (725)
Q Consensus 374 ~~le~~LK~~Y~ayv~~~k~t~~~tl~~InfMkNs~~EL~~l--D~~~sYq~A 424 (725)
+-+..|+|..|+ ||.+|.....-+.+-++.-.|++||--+ |.+--||+.
T Consensus 200 tkmal~~kk~fr--ir~sr~~gm~l~smahls~~~liqlt~~~~d~tp~~qil 250 (341)
T PHA02458 200 TKMALLPKKLFR--IRMSRNFGMKLLSMAHLSAECLIQLTQVGYDVTPFNNIL 250 (341)
T ss_pred hhHhhchHHHHH--hhhhhhcccchhhhhhhhHHHHHHHHhcccCcchHHHHH
Confidence 347778998887 7889999888888999999999999766 555557753
No 55
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=27.67 E-value=1.2e+02 Score=26.11 Aligned_cols=32 Identities=3% Similarity=0.123 Sum_probs=28.2
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004881 194 LLTSSAINSWCHLVKEQHNASAFISLLNAYRA 225 (725)
Q Consensus 194 ~lT~~~v~~W~~~l~~~~sl~alr~lv~AFRa 225 (725)
.+|.+||+.--.++-.+||=+-++++..+.+.
T Consensus 31 pine~mir~M~~QMG~kpSekqi~Q~m~~mk~ 62 (64)
T PF03672_consen 31 PINEKMIRAMMMQMGRKPSEKQIKQMMRSMKN 62 (64)
T ss_pred CCCHHHHHHHHHHhCCCccHHHHHHHHHHHHh
Confidence 48999999999999999999999999887664
No 56
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=27.35 E-value=46 Score=44.00 Aligned_cols=16 Identities=44% Similarity=0.480 Sum_probs=9.6
Q ss_pred ccCCchhhhccCCCCc
Q 004881 63 IEDMSLEAIFSEDESD 78 (725)
Q Consensus 63 ~~~msvd~ff~~~~~~ 78 (725)
-+|||-.|=|--++++
T Consensus 142 eed~~~~~~~~~d~~~ 157 (2849)
T PTZ00415 142 EEDMSPRDNFVIDDDD 157 (2849)
T ss_pred hhhcCcccccccCCcc
Confidence 4588886666544443
No 57
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=26.94 E-value=6.3e+02 Score=25.00 Aligned_cols=97 Identities=13% Similarity=0.098 Sum_probs=63.0
Q ss_pred hhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhhccccCccchhhhH-HHHHH
Q 004881 330 FFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQ-FLRNS 408 (725)
Q Consensus 330 y~~~f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~ayv~~~k~t~~~tl~~In-fMkNs 408 (725)
....||.+.-.++..+...-.+....||-.|..+|.+|....--..-..++-.+-.. .. ..=|.|. +-+.+
T Consensus 15 L~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~----l~----D~~~~Ir~~A~~~ 86 (178)
T PF12717_consen 15 LCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKL----LV----DENPEIRSLARSF 86 (178)
T ss_pred HHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHH----Hc----CCCHHHHHHHHHH
Confidence 356789999999999999999999999999999999998753222222221222211 11 1223343 55666
Q ss_pred HHHHhcC-CccchhHHHHHHHHHHHHH
Q 004881 409 FVELCSQ-DLLRSSNKAKVSINNLSRI 434 (725)
Q Consensus 409 ~~EL~~l-D~~~sYq~AF~yIRQLAIh 434 (725)
+.|+..- +++.-|++--..|-+|...
T Consensus 87 ~~e~~~~~~~~~i~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 87 FSELLKKRNPNIIYNNFPELISSLNNC 113 (178)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhCc
Confidence 7777765 7777777766666655543
No 58
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.41 E-value=5.7e+02 Score=31.94 Aligned_cols=155 Identities=19% Similarity=0.248 Sum_probs=91.0
Q ss_pred HHHHhCCcCCCCCccccccCCCCcch--hhhHHHHHHHHHHHHH---------hhc-C------CcHHHHHHHHHHhhhh
Q 004881 266 FREMLGISSNCKRDTILGLKNNSKWK--TVRPLIKSYLRSTLFM---------LNQ-A------TDSEILAFSLNRLRTS 327 (725)
Q Consensus 266 l~~~l~~k~~~~k~~~~~~~~~~kw~--kl~~liKsyl~sll~L---------L~~-l------td~~~l~~~L~~l~~l 327 (725)
+-|+||++..-|...-+++..+.+|. ++ -||+..+.| |.+ + ++.=++.+.|+.|..
T Consensus 60 Yi~MLGypahFGqieclKLias~~f~dKRi-----GYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~- 133 (866)
T KOG1062|consen 60 YIHMLGYPAHFGQIECLKLIASDNFLDKRI-----GYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGN- 133 (866)
T ss_pred HHHHhCCCccchhhHHHHHhcCCCchHHHH-----HHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhc-
Confidence 44899999876654444555555442 23 355543332 322 2 112256667777766
Q ss_pred hhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhhccccCccchhhhHHHHH
Q 004881 328 IVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRN 407 (725)
Q Consensus 328 lpy~~~f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~ayv~~~k~t~~~tl~~InfMkN 407 (725)
++-|-++|.+.-.+.++.....+-+|=-|-+|.-++.+.-| +.++..+-..-.. +. .|.+++ -+.++.+
T Consensus 134 ----i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P-~l~e~f~~~~~~l-L~-ek~hGV-L~~~l~l--- 202 (866)
T KOG1062|consen 134 ----ICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP-DLVEHFVIAFRKL-LC-EKHHGV-LIAGLHL--- 202 (866)
T ss_pred ----cCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc-hHHHHhhHHHHHH-Hh-hcCCce-eeeHHHH---
Confidence 56799999999999999999888899888888877776543 3333333222211 11 122111 1112221
Q ss_pred HHHHHhcCCc-cch-hHHHHHHHHHHHHHHHHhhhh
Q 004881 408 SFVELCSQDL-LRS-SNKAKVSINNLSRILQLGLQT 441 (725)
Q Consensus 408 s~~EL~~lD~-~~s-Yq~AF~yIRQLAIhLRnai~~ 441 (725)
+.|||.+.+ .+. |.- -.++|-..||+-.+.
T Consensus 203 -~~e~c~~~~~~l~~fr~---l~~~lV~iLk~l~~~ 234 (866)
T KOG1062|consen 203 -ITELCKISPDALSYFRD---LVPSLVKILKQLTNS 234 (866)
T ss_pred -HHHHHhcCHHHHHHHHH---HHHHHHHHHHHHhcC
Confidence 347777755 233 333 668888899988775
No 59
>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=25.60 E-value=91 Score=33.83 Aligned_cols=57 Identities=23% Similarity=0.393 Sum_probs=42.2
Q ss_pred HHHHHhccCcchHHHHHHHHHHHHHhhccccCccchhhhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhhhhhh
Q 004881 364 LQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKK 443 (725)
Q Consensus 364 Lr~l~~~~~~~~le~~LK~~Y~ayv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yIRQLAIhLRnai~~k~ 443 (725)
+..||..+|..| .||..|.|+-+|-..- -+.|||||=..|++.++.
T Consensus 245 ie~LC~G~P~EF------~myl~Y~R~L~F~E~P--------------------------dy~ylrqlFriLfr~ln~-- 290 (341)
T KOG1163|consen 245 IEVLCKGFPAEF------AMYLNYCRGLGFEEKP--------------------------DYMYLRQLFRILFRTLNH-- 290 (341)
T ss_pred HHHHhCCCcHHH------HHHHHHHhhcCCCCCC--------------------------cHHHHHHHHHHHHhhccc--
Confidence 445677777655 4899999999985322 267999999999998876
Q ss_pred hhhhhhcccchhH
Q 004881 444 KEAVKKICSWQYA 456 (725)
Q Consensus 444 Kea~k~VYNWQfv 456 (725)
.+--+|.|-..
T Consensus 291 --~~d~iyDW~~l 301 (341)
T KOG1163|consen 291 --QYDYIYDWTML 301 (341)
T ss_pred --cCCeEeeHHHH
Confidence 35667887543
No 60
>PTZ00479 RAP Superfamily; Provisional
Probab=24.67 E-value=1.2e+03 Score=27.30 Aligned_cols=194 Identities=12% Similarity=0.045 Sum_probs=117.2
Q ss_pred hHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCc
Q 004881 294 RPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSS 373 (725)
Q Consensus 294 ~~liKsyl~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~~ 373 (725)
..+...++.-+...|.+++..++. .++..|..+. +-.+.++..+-+.++.-|..=..+-=+-+|.++.+|+..-
T Consensus 115 ~efy~~~~~~v~~~L~~fssh~L~-~i~wALsrL~---Ird~~fL~~~ak~vl~r~~~~r~~dl~k~~nslakLg~~~-- 188 (435)
T PTZ00479 115 PEFYEKMLKFVQPLLPNFYSHSLM-CIAWALNRVQ---IRDEAFLSRFAKEVGEKFDDIRTTDLIKICNSLAKLGGYT-- 188 (435)
T ss_pred HHHHHHHHHHHHHHhhhcCccHHH-HHHHHHHhcC---CCcHHHHHHHHHHHHhhccccCchhHHHHHHHHHHhcCCc--
Confidence 457788888888888888876654 3455665543 4558889999999999998844322234456666665532
Q ss_pred chHHHHHHHHHHHH-----Hhhcc-ccCccchhhhHH----HHHHHHHHhcCC----ccchhHHHH---HHHHHHHHHHH
Q 004881 374 DCFDLCLIKMYKAF-----IGHCK-FAEPALFKHLQF----LRNSFVELCSQD----LLRSSNKAK---VSINNLSRILQ 436 (725)
Q Consensus 374 ~~le~~LK~~Y~ay-----v~~~k-~t~~~tl~~Inf----MkNs~~EL~~lD----~~~sYq~AF---~yIRQLAIhLR 436 (725)
..+-.-|-..+.+= -++|| -+++-|+ ++| |+-.+.|.|.-- -..-||.|| +|||.+.=|+=
T Consensus 189 ~~l~k~l~~~~~~rle~~~~~~~r~~i~~it~--~~Lf~d~m~~~~ler~s~~~~c~r~~hl~~~y~~aly~rl~~p~v~ 266 (435)
T PTZ00479 189 NNLKKFLSEKMVEKLESLFAQDFRNVVNDVTL--IHLYDDNTQIYILERFSKMFICARPQHLQQAYKSAVAVRVLLPHVW 266 (435)
T ss_pred HHHHHHHHHHHHHHHhhhcccchhhhcChhhH--HHHhhhHHHHHHHHHccccceecccHHHHHHHhhhhhheeechHHH
Confidence 22222233333332 33555 3443332 332 555677776532 245677999 99999999998
Q ss_pred HhhhhhhhhhhhhcccchhHhHHHHHHHHHcccCCCCCccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHhcc
Q 004881 437 LGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSS 516 (725)
Q Consensus 437 nai~~k~Kea~k~VYNWQfvhsL~~Ws~VLs~~~~~s~L~pLiYPLVQVi~G~irLiPt~ryfPLRfh~ir~L~~Ls~~t 516 (725)
+.++...+.-+. ++|.+=|.. -...|+ |++--+-++|..+--.-
T Consensus 267 ~~Ls~~~r~Fl~-----------r~s~r~i~~---------------------~~~~~S----~~h~dVS~~L~~mGI~H 310 (435)
T PTZ00479 267 FQLSKSVKSFYT-----------RLSMRRIPQ---------------------SLRKPS----PFQWDVSNCLAKLGISH 310 (435)
T ss_pred HhcCHHHHHHHH-----------HHhhccccc---------------------cCCCCc----HHHHHHHHHHHHhCCch
Confidence 888876553221 234432221 011222 44444889998887544
Q ss_pred CcceechhHHHHhhc
Q 004881 517 GIFIPVTSLMLDVLE 531 (725)
Q Consensus 517 ~~fIPl~p~LleiL~ 531 (725)
..-+..-||.++|..
T Consensus 311 ~ne~~~Gpf~iDI~~ 325 (435)
T PTZ00479 311 RNTFYWGCFWIDIGE 325 (435)
T ss_pred hhheeecCeEEEEec
Confidence 444558899888874
No 61
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=23.78 E-value=6.9e+02 Score=28.61 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHhhcCCCch---hHHHHHHHHHHHHhcc
Q 004881 335 PLLIRRLIKIAVHLWATGEET---VSFHSFLILQDVASGF 371 (725)
Q Consensus 335 ~kl~k~llK~lv~lWst~~e~---vrv~AFl~Lr~l~~~~ 371 (725)
+.+++.+=+.+-..|...... .-|.+|++||=+|-..
T Consensus 224 R~i~~~lr~~v~~kfpd~~~~~~~~~Vg~FiFLRFicPAI 263 (395)
T cd05137 224 RHILKYIRAKLEDRYGDFLRTVVYNSISGFLFLRFFCPAI 263 (395)
T ss_pred HHHHHHHHHHHHHHCCCchhhHHHHHHHHHHHHHHhcccc
Confidence 344555555555566654322 3478999999887643
No 62
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=23.56 E-value=49 Score=35.60 Aligned_cols=17 Identities=35% Similarity=0.419 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHhhcCC
Q 004881 129 LELENKKKKLSRLKAKD 145 (725)
Q Consensus 129 ~~~~~hk~~L~~LkekD 145 (725)
++++.+|..-.+=|.++
T Consensus 257 de~Ee~K~~~k~kk~~~ 273 (303)
T KOG3064|consen 257 DEIEENKKESKKKKGKK 273 (303)
T ss_pred hhHHHhhhhhhhcccCC
Confidence 44566665555444443
No 63
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=23.42 E-value=2.7e+02 Score=24.18 Aligned_cols=64 Identities=19% Similarity=0.173 Sum_probs=36.4
Q ss_pred HHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchHH-H-HHHHHHHHHhhcCCCchhHHHHHHHHHHHH
Q 004881 304 TLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLL-I-RRLIKIAVHLWATGEETVSFHSFLILQDVA 368 (725)
Q Consensus 304 ll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~kl-~-k~llK~lv~lWst~~e~vrv~AFl~Lr~l~ 368 (725)
++.+|.. +++.+...++..|..+....-..+.. . ..++..++++-.+.+..++-.|..+|.+|+
T Consensus 54 l~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 54 LVQLLKS-EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHhC-CCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 3344433 45566666665555543222111111 1 225777777777777778888888888775
No 64
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=22.97 E-value=77 Score=33.81 Aligned_cols=12 Identities=17% Similarity=0.332 Sum_probs=7.4
Q ss_pred HHHHHHHHHhhc
Q 004881 132 ENKKKKLSRLKA 143 (725)
Q Consensus 132 ~~hk~~L~~Lke 143 (725)
+....+|+++|.
T Consensus 149 ~~Ll~ELekIKk 160 (244)
T PF04889_consen 149 AALLRELEKIKK 160 (244)
T ss_pred HHHHHHHHHHHH
Confidence 555666666664
No 65
>COG3296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.86 E-value=23 Score=34.23 Aligned_cols=32 Identities=19% Similarity=0.382 Sum_probs=25.3
Q ss_pred ccchHHHHHHHHhhhhcccCCCcc-cchHHHHH
Q 004881 475 LQPLLYIIIQIINGMATLFPGPRY-LPLRCKCI 506 (725)
Q Consensus 475 L~pLiYPLVQVi~G~irLiPt~ry-fPLRfh~i 506 (725)
+--+|||||=+|+|++|-..+..| |||.+..|
T Consensus 110 ~alsi~~lv~ti~a~~Ka~eGq~YryPLtiRfi 142 (143)
T COG3296 110 FALSILSLVLTIIAAIKAYEGQEYRYPLTIRFI 142 (143)
T ss_pred HHHHHHHHHHHHHHHHHhhCCceeeeeeEEEee
Confidence 344689999999999999998766 78765443
No 66
>PTZ00429 beta-adaptin; Provisional
Probab=22.50 E-value=1.6e+03 Score=28.07 Aligned_cols=199 Identities=11% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcCCcHHHHHHHHHHhhhhhhh--hhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcc
Q 004881 297 IKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVF--FAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSD 374 (725)
Q Consensus 297 iKsyl~sll~LL~~ltd~~~l~~~L~~l~~llpy--~~~f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~~~ 374 (725)
....+..++..|.. +++.++--+++-+-.+.++ --..+.+++++-..++.| +++...+|..+.-.|+-|+...+.-
T Consensus 254 ~~~il~~l~~~Lq~-~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P~l 331 (746)
T PTZ00429 254 AETLLTRVLPRMSH-QNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFPNL 331 (746)
T ss_pred HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCHHH
Q ss_pred hHHHHHHHHHH-----HHHhh------ccccCccchhhhHHHHHHHHHHhcCCccchhHH-HHHHHHHHHHHHHHhhhhh
Q 004881 375 CFDLCLIKMYK-----AFIGH------CKFAEPALFKHLQFLRNSFVELCSQDLLRSSNK-AKVSINNLSRILQLGLQTK 442 (725)
Q Consensus 375 ~le~~LK~~Y~-----ayv~~------~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~-AF~yIRQLAIhLRnai~~k 442 (725)
+... ++..|- .||+. ++-+|..|...|- +-+.| |..+.+..|.. +-.-|.+||+.+-++...
T Consensus 332 f~~~-~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL---~EL~e-Ya~d~D~ef~r~aIrAIg~lA~k~~~~a~~- 405 (746)
T PTZ00429 332 LRTN-LDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEIL---KELAE-YASGVDMVFVVEVVRAIASLAIKVDSVAPD- 405 (746)
T ss_pred HHHH-HHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHH---HHHHH-HhhcCCHHHHHHHHHHHHHHHHhChHHHHH-
Q ss_pred hhhhhhhcccchhHhHHHHHHHHHcccCCCCCccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHH---------H
Q 004881 443 KKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHL---------S 513 (725)
Q Consensus 443 ~Kea~k~VYNWQfvhsL~~Ws~VLs~~~~~s~L~pLiYPLVQVi~G~irLiPt~ryfPLRfh~ir~L~~L---------s 513 (725)
|+++-..+|..... +++=++-+++-+ .|-+|=++.+-+.+..+ +
T Consensus 406 ---------------cV~~Ll~ll~~~~~----------~v~e~i~vik~I--lrkyP~~~il~~L~~~~~~~~i~e~~A 458 (746)
T PTZ00429 406 ---------------CANLLLQIVDRRPE----------LLPQVVTAAKDI--VRKYPELLMLDTLVTDYGADEVVEEEA 458 (746)
T ss_pred ---------------HHHHHHHHhcCCch----------hHHHHHHHHHHH--HHHCccHHHHHHHHHhhcccccccHHH
Q ss_pred hcc--------CcceechhHHHHhh
Q 004881 514 SSS--------GIFIPVTSLMLDVL 530 (725)
Q Consensus 514 ~~t--------~~fIPl~p~LleiL 530 (725)
.++ +.+||-+|.+++.+
T Consensus 459 KaaiiWILGEy~~~I~~a~~~L~~~ 483 (746)
T PTZ00429 459 KVSLLWMLGEYCDFIENGKDIIQRF 483 (746)
T ss_pred HHHHHHHHHhhHhhHhhHHHHHHHH
No 67
>PF08559 Cut8_C: Cut8 six-helix bundle; InterPro: IPR013868 In Schizosaccharomyces pombe (Fission yeast), Cut8 is a nuclear envelope protein that physically interacts with and tethers 26S proteasome in the nucleus resulting in the nuclear accumulation of proteasomes []. Cut8 is a proteasome substrate and amino terminal residues 1-72 are polyubiquitinated and function as a degron tag. Ubiquitination of the amino terminal is essential to the function of Cut8. Lysine residues in the amino terminal 72 amino acids of Cut8 are required for physical interaction with the proteasome. In fission yeast the function of Cut8 has been demonstrated to be regulated by ubiquitin-conjugating Rhp6/Ubc2/Rad6 and ligating enzymes Ubr1. Cut8 homologs have been identified in Drosophila melanogaster (Fruit fly), Anopheles gambiae (African malaria mosquito) and Dictyostelium discoideum (Slime mold). ; PDB: 3Q5W_A 3Q5X_A.
Probab=21.73 E-value=7.7e+02 Score=24.19 Aligned_cols=91 Identities=13% Similarity=0.186 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHhCCcCCCCCccccccCCCCcchhhhHHHHHHHHHHHHHhhcCC--cHHHHHHHHHHhhhhhhhhhcc
Q 004881 257 FVLREADDVFREMLGISSNCKRDTILGLKNNSKWKTVRPLIKSYLRSTLFMLNQAT--DSEILAFSLNRLRTSIVFFAAF 334 (725)
Q Consensus 257 ~~L~~lp~~l~~~l~~k~~~~k~~~~~~~~~~kw~kl~~liKsyl~sll~LL~~lt--d~~~l~~~L~~l~~llpy~~~f 334 (725)
-.|+..-.-+.+.+|++..... .-.+.++++.+-.|+.+++....++- ...-....|+-|.....++...
T Consensus 8 ~~L~~~~~~i~~s~Py~~~~~~--------dyaY~Rvk~~L~~F~~~L~D~~~~~lPP~~~~~~~sL~fl~~at~~v~~L 79 (143)
T PF08559_consen 8 EVLQQKQENIYKSFPYSRSVSS--------DYAYNRVKPHLLEFLKALSDFGLNFLPPNEQQWSTSLEFLDEATNIVHKL 79 (143)
T ss_dssp HHHHHHHHHHHHTS-SSS-TTS--------HHHHHHHHHHHHHHHHHHHHHGGGGSTTT---HHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhCCCCCCCCc--------chhHHHHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHC
Confidence 3455666777788888764221 23588899999999999999887776 5555555666666666667666
Q ss_pred hHHHHHHHHHHHHhhcCCC-chhHHHHHHHHHHH
Q 004881 335 PLLIRRLIKIAVHLWATGE-ETVSFHSFLILQDV 367 (725)
Q Consensus 335 ~kl~k~llK~lv~lWst~~-e~vrv~AFl~Lr~l 367 (725)
|. |.+.+ ...|-.||=-|-..
T Consensus 80 P~------------w~~~~~n~~k~~~ye~ls~~ 101 (143)
T PF08559_consen 80 PN------------WDNQSHNYYKDKCYEQLSNA 101 (143)
T ss_dssp ---------------SSCGGGHHHHHHHHHHHHH
T ss_pred CC------------CCCHHHHHHHHHHHHHHHHH
Confidence 65 77766 35666666555543
No 68
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=21.12 E-value=54 Score=38.55 Aligned_cols=11 Identities=27% Similarity=0.126 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 004881 214 SAFISLLNAYR 224 (725)
Q Consensus 214 ~alr~lv~AFR 224 (725)
.+=++...||-
T Consensus 534 napkra~sa~m 544 (615)
T KOG0526|consen 534 NAPKRATSAYM 544 (615)
T ss_pred CCCccchhHHH
Confidence 33334444443
No 69
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=21.09 E-value=4e+02 Score=23.11 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=24.1
Q ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHHhcc
Q 004881 340 RLIKIAVHLWATGEETVSFHSFLILQDVASGF 371 (725)
Q Consensus 340 ~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~ 371 (725)
.++..++.+-.++...++..|.-+|.+|+...
T Consensus 49 ~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 49 GGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred CChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 45556666666677788889999999998754
No 70
>PF07165 DUF1397: Protein of unknown function (DUF1397); InterPro: IPR009832 This entry consists of several insect specific 27 kDa Haemolymph glycoprotein precursors. The function of this family is unknown [].
Probab=20.94 E-value=9.6e+02 Score=24.99 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=36.8
Q ss_pred cchHHHHHHHHHHHHHhhccccCccchhh--------hHHHHHHHHHHhcC--Ccc--chhHHHHHHHHH
Q 004881 373 SDCFDLCLIKMYKAFIGHCKFAEPALFKH--------LQFLRNSFVELCSQ--DLL--RSSNKAKVSINN 430 (725)
Q Consensus 373 ~~~le~~LK~~Y~ayv~~~k~t~~~tl~~--------InfMkNs~~EL~~l--D~~--~sYq~AF~yIRQ 430 (725)
...+..|+-+++..| ......+..++|. +.=+++|+++=+.- +++ -.+..-|.|||.
T Consensus 141 ~~~i~~C~~~~~~~~-~~~~~s~~~~~p~~~~~qC~~l~~~~~Cvv~~Le~C~~~tpani~~~~f~~i~k 209 (213)
T PF07165_consen 141 KDNIQQCANKTFSGY-SDMNISKLMSIPKFGEKQCSDLDNLRSCVVEKLEKCSDPTPANIFDSFFRFIRK 209 (213)
T ss_pred hHHHHHHHHHHHhhc-cccccccccccCcCChHhhhhHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHh
Confidence 566777888888777 3222222244544 66689999976654 333 348888999885
No 71
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=20.16 E-value=48 Score=36.94 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=23.6
Q ss_pred HHHhhcCChhhhHhhhh---hCccccCCCCC
Q 004881 138 LSRLKAKDPGFSKFLES---HDKGLKSFRNE 165 (725)
Q Consensus 138 L~~LkekDPEFyKyL~e---nD~eLL~F~~~ 165 (725)
|..|+|-|||+|+-|++ ..++.+++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 33 (416)
T PRK00011 3 MDNLAEYDPEIADAIEQELKRQEEHIELIAS 33 (416)
T ss_pred chhhhhcCHHHHHHHHHHHHHHhcCeeeecc
Confidence 56899999999999987 77888887653
Done!