Query 004881
Match_columns 725
No_of_seqs 210 out of 291
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 08:42:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004881.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004881hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x19_B Importin-13; nuclear tr 89.6 24 0.00082 41.5 22.0 132 299-440 486-622 (963)
2 2bpt_A Importin beta-1 subunit 88.7 32 0.0011 39.3 21.6 218 298-531 406-649 (861)
3 2x1g_F Cadmus; transport prote 84.1 33 0.0011 40.6 19.0 218 299-531 501-740 (971)
4 4fdd_A Transportin-1; heat rep 82.9 27 0.00094 40.6 17.5 228 295-530 396-679 (852)
5 3m1i_C Exportin-1; heat repeat 82.3 33 0.0011 41.3 18.2 93 295-389 186-286 (1049)
6 4fdd_A Transportin-1; heat rep 82.2 30 0.001 40.2 17.4 84 288-374 78-162 (852)
7 3a6p_A Exportin-5; exportin-5, 78.1 1E+02 0.0034 38.1 20.9 162 302-469 532-735 (1204)
8 3m1i_C Exportin-1; heat repeat 78.0 74 0.0025 38.2 19.4 65 320-384 520-595 (1049)
9 1qgr_A Protein (importin beta 75.1 1.2E+02 0.0041 34.6 24.4 182 336-530 404-611 (876)
10 1ibr_B P95, importin beta-1 su 74.3 86 0.0029 32.5 19.4 65 451-519 378-442 (462)
11 2bpt_A Importin beta-1 subunit 71.8 1.4E+02 0.0048 33.9 28.8 191 337-531 495-729 (861)
12 1ibr_B P95, importin beta-1 su 71.8 69 0.0024 33.3 15.1 79 289-372 79-162 (462)
13 1u6g_C TIP120 protein, CAND1; 61.4 2.3E+02 0.0079 34.3 18.7 204 298-531 47-265 (1230)
14 3gjx_A Exportin-1; transport, 59.7 34 0.0012 42.0 10.9 96 291-389 194-294 (1073)
15 1u6g_C TIP120 protein, CAND1; 59.5 94 0.0032 37.7 14.8 173 337-530 431-615 (1230)
16 1wa5_C Importin alpha RE-expor 59.3 1.9E+02 0.0066 34.2 17.2 181 313-513 471-672 (960)
17 3gjx_A Exportin-1; transport, 59.3 2E+02 0.0068 35.3 17.5 76 297-372 515-598 (1073)
18 4hat_C Exportin-1; heat repeat 58.0 1.3E+02 0.0045 36.5 15.7 52 320-371 520-571 (1023)
19 2x1g_F Cadmus; transport prote 51.9 2.3E+02 0.0079 33.3 16.1 80 451-531 366-469 (971)
20 4hat_C Exportin-1; heat repeat 51.8 1.6E+02 0.0055 35.8 15.0 97 291-389 182-286 (1023)
21 1wa5_C Importin alpha RE-expor 50.3 3.2E+02 0.011 32.2 17.1 31 355-385 376-406 (960)
22 2qk2_A LP04448P; mini spindles 49.1 1.9E+02 0.0064 27.8 14.4 58 312-369 69-127 (242)
23 3u0r_A Apoptosis inhibitor 5; 46.8 27 0.00092 39.3 6.5 94 327-430 52-145 (507)
24 1ho8_A Vacuolar ATP synthase s 44.2 2.8E+02 0.0097 31.0 14.2 134 299-440 77-225 (480)
25 2x19_B Importin-13; nuclear tr 42.5 4.7E+02 0.016 30.5 19.5 148 356-531 423-574 (963)
26 1qgr_A Protein (importin beta 41.4 4.4E+02 0.015 29.9 30.9 57 474-532 684-741 (876)
27 3jxy_A Alkylpurine DNA glycosy 41.1 2.2E+02 0.0077 28.0 11.8 96 300-405 5-116 (232)
28 4b8j_A Importin subunit alpha- 40.3 2.8E+02 0.0094 29.8 13.4 70 301-370 204-274 (528)
29 3a6p_A Exportin-5; exportin-5, 40.1 3.6E+02 0.012 33.1 15.8 55 314-371 221-278 (1204)
30 1xqr_A HSPBP1 protein; armadil 38.9 3.3E+02 0.011 27.8 14.1 151 302-468 127-288 (296)
31 1wa5_B Importin alpha subunit; 36.3 3E+02 0.01 29.7 12.9 71 300-371 216-288 (530)
32 3faj_A ORF131, putative unchar 35.5 51 0.0017 30.4 5.3 62 561-626 25-86 (151)
33 3tpo_A Importin subunit alpha- 30.5 4.1E+02 0.014 28.8 12.9 98 342-441 164-262 (529)
34 3ibv_A Exportin-T; karyopherin 29.6 7.3E+02 0.025 29.8 15.8 207 313-531 508-748 (980)
35 2qk2_A LP04448P; mini spindles 28.7 1.4E+02 0.0049 28.6 7.9 77 299-376 133-212 (242)
36 3dt5_A Uncharacterized protein 26.0 53 0.0018 29.0 3.6 29 563-591 97-125 (135)
37 2oxo_A Integrase; DNA-binding 25.9 1.1E+02 0.0038 24.2 5.5 38 194-231 45-82 (103)
38 2jdq_A Importin alpha-1 subuni 24.9 4.2E+02 0.014 27.2 11.2 80 286-370 11-95 (450)
39 1paq_A Translation initiation 24.8 4.5E+02 0.015 25.2 10.6 52 195-262 22-73 (189)
40 2of3_A ZYG-9; multifunctional 22.7 4.4E+02 0.015 26.9 10.5 71 339-417 131-202 (266)
41 2kiw_A INT protein; alpha, str 22.0 1.4E+02 0.0047 24.6 5.6 37 194-230 43-79 (111)
42 4db6_A Armadillo repeat protei 21.5 3.1E+02 0.011 25.0 8.5 66 302-371 57-127 (210)
43 2y6w_A BCL-2-like protein 2; a 21.1 2.3E+02 0.008 27.1 7.6 85 398-487 52-140 (177)
44 3lys_A Prophage PI2 protein 01 20.9 1.5E+02 0.005 24.9 5.6 36 194-229 50-85 (112)
45 2jdq_A Importin alpha-1 subuni 20.5 4.4E+02 0.015 27.0 10.3 71 301-371 151-223 (450)
46 4aco_A Centromere DNA-binding 20.4 21 0.00073 42.3 0.0 20 5-24 610-632 (956)
47 2kj5_A Phage integrase; GFT PS 20.1 1.1E+02 0.0039 25.4 4.7 38 194-231 50-87 (116)
48 2qk1_A Protein STU2; STU2P, XM 20.1 5.1E+02 0.017 25.4 10.2 123 312-442 73-203 (249)
No 1
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=89.57 E-value=24 Score=41.52 Aligned_cols=132 Identities=9% Similarity=0.098 Sum_probs=80.3
Q ss_pred HHHHHHHHHhhcCC--cHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCc---
Q 004881 299 SYLRSTLFMLNQAT--DSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSS--- 373 (725)
Q Consensus 299 syl~sll~LL~~lt--d~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~~--- 373 (725)
.++..++..|.++. ++.+-..++.-+..+..|+...+..+..++..++..... ..|+..|-..+.++|...+.
T Consensus 486 ~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~ 563 (963)
T 2x19_B 486 DVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLP 563 (963)
T ss_dssp SHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCT
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777776776 355555666677777788888888888888888887754 67888888888999876543
Q ss_pred chHHHHHHHHHHHHHhhccccCccchhhhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhhh
Q 004881 374 DCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQ 440 (725)
Q Consensus 374 ~~le~~LK~~Y~ayv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yIRQLAIhLRnai~ 440 (725)
++++.++..+...+-+. ... .......-.|+.-+..--+ ...--.|+.+|.-.|.+.+.
T Consensus 564 p~~~~il~~l~~~l~~~----~~~-~~~~~~~~eai~~i~~~~~---~~~~~~~~~~l~~~l~~~l~ 622 (963)
T 2x19_B 564 PYAANIVAVSQDVLMKQ----IHK-TSQCMWLMQALGFLLSALQ---VEEILKNLHSLISPYIQQLE 622 (963)
T ss_dssp TTHHHHHHHHHHHHHTT----CSC-HHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhccC----CCC-hHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHH
Confidence 55666665554433211 111 1222233444444443211 33344567777666665554
No 2
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=88.65 E-value=32 Score=39.34 Aligned_cols=218 Identities=9% Similarity=0.080 Sum_probs=104.5
Q ss_pred HHHHHHHHHHh-hcCCc--HHHHHHHHHHhhhhhhhhhc---chHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhcc
Q 004881 298 KSYLRSTLFML-NQATD--SEILAFSLNRLRTSIVFFAA---FPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGF 371 (725)
Q Consensus 298 Ksyl~sll~LL-~~ltd--~~~l~~~L~~l~~llpy~~~---f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~ 371 (725)
..|+..++..| ..+.| +.+-..++..+..+..++.. -......++..++...... ..+|..|...|..++...
T Consensus 406 ~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~ 484 (861)
T 2bpt_A 406 TYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQL 484 (861)
T ss_dssp HHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhc
Confidence 44444444332 33333 33433444444444444432 1345666677777666554 568888888888888765
Q ss_pred C---cchHHHHHHHHHHHHHhhccccCccchhhhH-HHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhhhhh-----
Q 004881 372 S---SDCFDLCLIKMYKAFIGHCKFAEPALFKHLQ-FLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTK----- 442 (725)
Q Consensus 372 ~---~~~le~~LK~~Y~ayv~~~k~t~~~tl~~In-fMkNs~~EL~~lD~~~sYq~AF~yIRQLAIhLRnai~~k----- 442 (725)
. ...+...+..+...+++..+....+ +.+. ..-.++..|....+.. ...|+.++.-.|-+.+...
T Consensus 485 ~~~~~~~l~~~~~~il~~L~~~l~~~d~~--~~vr~~a~~al~~l~~~~~~~----~~~~~~~l~~~l~~~l~~~~~~~~ 558 (861)
T 2bpt_A 485 AEATPSPIYNFYPALVDGLIGAANRIDNE--FNARASAFSALTTMVEYATDT----VAETSASISTFVMDKLGQTMSVDE 558 (861)
T ss_dssp SSSSSCGGGGGHHHHHHHHHHHHTCSCCG--GGHHHHHHHHHHHHHHHCCGG----GHHHHHHHHHHHHHHHHHHTTSCG
T ss_pred ccccchhhHHHHHHHHHHHHHHHhCcCcc--hHHHHHHHHHHHHHHHHcchh----hHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4 2333333334444444433322211 1111 1112222222222221 1234555444443333211
Q ss_pred ------hhhhhhhcccchhHhHHHHHHHHHcccCCCCCccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHhcc
Q 004881 443 ------KKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSS 516 (725)
Q Consensus 443 ------~Kea~k~VYNWQfvhsL~~Ws~VLs~~~~~s~L~pLiYPLVQVi~G~irLiPt~ryfPLRfh~ir~L~~Ls~~t 516 (725)
..+....+. .+++...+.++.... ..+.|.+-++++.++.+++-..+. .+|-.++..+-.++...
T Consensus 559 ~i~~~~~~~~~~~~~----~~~~~~l~~l~~~~~--~~~~~~~~~l~~~l~~~l~~~~~~---~v~~~~~~~l~~l~~~~ 629 (861)
T 2bpt_A 559 NQLTLEDAQSLQELQ----SNILTVLAAVIRKSP--SSVEPVADMLMGLFFRLLEKKDSA---FIEDDVFYAISALAASL 629 (861)
T ss_dssp GGCCHHHHHHHHHHH----HHHHHHHHHHHHHCG--GGTGGGHHHHHHHHHHHHHSTTGG---GTHHHHHHHHHHHHHHH
T ss_pred ccCChhhHHHHHHHH----HHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHccCCCC---cHHHHHHHHHHHHHHHH
Confidence 011122111 234455555554332 257788888888888877653221 46777888888887665
Q ss_pred Cc-cee----chhHHHHhhc
Q 004881 517 GI-FIP----VTSLMLDVLE 531 (725)
Q Consensus 517 ~~-fIP----l~p~LleiL~ 531 (725)
|. |.| +.|+|+..|+
T Consensus 630 ~~~~~~~l~~i~~~l~~~l~ 649 (861)
T 2bpt_A 630 GKGFEKYLETFSPYLLKALN 649 (861)
T ss_dssp GGGGHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhc
Confidence 43 444 4455555553
No 3
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=84.14 E-value=33 Score=40.62 Aligned_cols=218 Identities=12% Similarity=0.051 Sum_probs=111.1
Q ss_pred HHHHHHHHHhhcCC----cHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCc-
Q 004881 299 SYLRSTLFMLNQAT----DSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSS- 373 (725)
Q Consensus 299 syl~sll~LL~~lt----d~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~~- 373 (725)
.++..++.+|.++. .+-+-..++..+..+..|+...+..+..++..++.... ..|+..|...+.+++.....
T Consensus 501 ~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~~ 577 (971)
T 2x1g_F 501 RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGLN---SSMSAQATLGLKELCRDCQLQ 577 (971)
T ss_dssp CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHh
Confidence 35556666776665 44555566666777778888777888888888887662 56888888888899876543
Q ss_pred --chHHHHHHHHHHHHHhhccccCccchhhhHHHHHHHHHHhcC-CccchhHHHHHHHHHHHHHHHHhhhhh--hhhhhh
Q 004881 374 --DCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQ-DLLRSSNKAKVSINNLSRILQLGLQTK--KKEAVK 448 (725)
Q Consensus 374 --~~le~~LK~~Y~ayv~~~k~t~~~tl~~InfMkNs~~EL~~l-D~~~sYq~AF~yIRQLAIhLRnai~~k--~Kea~k 448 (725)
++++.++..+...+- ..+... ........|+..+... .+..-+.+.=.++..+.-.+..++... ..+.
T Consensus 578 l~p~~~~ll~~l~~~l~----~~~~~~-~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~-- 650 (971)
T 2x1g_F 578 LKPYADPLLNACHASLN----TGRMKN-SDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAA-- 650 (971)
T ss_dssp HHHHHHHHHHHHHHHHH----STTSCH-HHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHH--
T ss_pred ccccHHHHHHHHHHHHc----CCCCCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhh--
Confidence 334444433333322 111111 2223344566666542 222223333333333333333333322 1111
Q ss_pred hcccchhHhHHHHHHHHHcccCC-----------CCCccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHhcc-
Q 004881 449 KICSWQYANCIDLWVTYISHCIH-----------DYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSS- 516 (725)
Q Consensus 449 ~VYNWQfvhsL~~Ws~VLs~~~~-----------~s~L~pLiYPLVQVi~G~irLiPt~ryfPLRfh~ir~L~~Ls~~t- 516 (725)
.=+.+++|+.-+.++..... ..++.|++-.+.+++..++...+ ...+++=.+++.+-+++..-
T Consensus 651 ---~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~--~~~~v~e~~~~~~~~~~~~~~ 725 (971)
T 2x1g_F 651 ---RIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWV--EEIDVLEAACSAMKHAITNLR 725 (971)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHhhh
Confidence 11345566666766654211 23455555555555555544322 23466666777766655432
Q ss_pred CcceechhHHHHhhc
Q 004881 517 GIFIPVTSLMLDVLE 531 (725)
Q Consensus 517 ~~fIPl~p~LleiL~ 531 (725)
+.|.|..|-+++.|-
T Consensus 726 ~~~~p~l~~~~~~l~ 740 (971)
T 2x1g_F 726 SSFQPMLQDLCLFIV 740 (971)
T ss_dssp C--CTHHHHHHHHHH
T ss_pred hhccccHHHHHHHHH
Confidence 346677776666554
No 4
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=82.93 E-value=27 Score=40.57 Aligned_cols=228 Identities=10% Similarity=0.093 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhc--chHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccC
Q 004881 295 PLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAA--FPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFS 372 (725)
Q Consensus 295 ~liKsyl~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~--f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~ 372 (725)
+.+...+..++.+|+. .++.+-..+...+..+..++.. .......++..++..-..+...+|..|...|..++...+
T Consensus 396 ~~l~~~l~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~ 474 (852)
T 4fdd_A 396 PYLPELIPHLIQCLSD-KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC 474 (852)
T ss_dssp GGHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444432 2344555555555555555432 345566777777777666667899999999888886544
Q ss_pred c---chHHHHHHHHHHHHHhhccccC----------------c--cchhhhHHHHHHHHHHhcC--CccchhHHHHHHHH
Q 004881 373 S---DCFDLCLIKMYKAFIGHCKFAE----------------P--ALFKHLQFLRNSFVELCSQ--DLLRSSNKAKVSIN 429 (725)
Q Consensus 373 ~---~~le~~LK~~Y~ayv~~~k~t~----------------~--~tl~~InfMkNs~~EL~~l--D~~~sYq~AF~yIR 429 (725)
. ++++.++..+-..+ +.....+ . ..-+.+.-....+.+.|.. |.......++.-|.
T Consensus 475 ~~l~~~l~~ll~~L~~~l-~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~ 553 (852)
T 4fdd_A 475 TELVPYLAYILDTLVFAF-SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLS 553 (852)
T ss_dssp GGGGGGHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHH
T ss_pred HhhHhHHHHHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 3 45555555443332 2111000 0 0001222222344443332 33333346677777
Q ss_pred HHHHHHHHhhhhhhhhhhhhcc-----------------------cch-hHhHHHHHHHHHcccCCCCCccchH--HHHH
Q 004881 430 NLSRILQLGLQTKKKEAVKKIC-----------------------SWQ-YANCIDLWVTYISHCIHDYDLQPLL--YIII 483 (725)
Q Consensus 430 QLAIhLRnai~~k~Kea~k~VY-----------------------NWQ-fvhsL~~Ws~VLs~~~~~s~L~pLi--YPLV 483 (725)
.++..++..+..--..-|..+. .-+ .+.++++.+.++.... ..+.|++ -.++
T Consensus 554 ~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~--~~~~~~~~~~~~~ 631 (852)
T 4fdd_A 554 SVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLG--GNIEQLVARSNIL 631 (852)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHG--GGGHHHHHTCCHH
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHh--HhHHHHhcCCcHH
Confidence 7777776654321111111110 111 2445666666655431 3455554 2444
Q ss_pred HHHhhhhcccCCCcccchHHHHHHHHHHHHhccC-cceech----hHHHHhh
Q 004881 484 QIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSG-IFIPVT----SLMLDVL 530 (725)
Q Consensus 484 QVi~G~irLiPt~ryfPLRfh~ir~L~~Ls~~t~-~fIPl~----p~LleiL 530 (725)
.+++.++ .+ .....|-..+..|-.++...+ .|.|.. |+|+..|
T Consensus 632 ~~l~~~l---~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l 679 (852)
T 4fdd_A 632 TLMYQCM---QD-KMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNL 679 (852)
T ss_dssp HHHHHHT---TC-SSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTC
T ss_pred HHHHHHh---CC-CChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc
Confidence 4444433 22 235688888888888886554 445543 4444444
No 5
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=82.27 E-value=33 Score=41.29 Aligned_cols=93 Identities=8% Similarity=0.103 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHH----HhhcCCcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHH-HhhcCCCchhHHHHHHHHHHHHh
Q 004881 295 PLIKSYLRSTLF----MLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAV-HLWATGEETVSFHSFLILQDVAS 369 (725)
Q Consensus 295 ~liKsyl~sll~----LL~~ltd~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv-~lWst~~e~vrv~AFl~Lr~l~~ 369 (725)
..+..++..++. +|....++++...+|+.+..++.|+-.-.-+.-.++..++ .+++ ...+|.+|.-||..++.
T Consensus 186 ~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~ 263 (1049)
T 3m1i_C 186 NSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSN 263 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCC--CHhHHHHHHHHHHHHHh
Confidence 444555555444 4444456778888888888766654321111122444444 2332 56789999999999887
Q ss_pred ccCcch---HHHHHHHHHHHHHh
Q 004881 370 GFSSDC---FDLCLIKMYKAFIG 389 (725)
Q Consensus 370 ~~~~~~---le~~LK~~Y~ayv~ 389 (725)
..-.+. ++..+..+|...+.
T Consensus 264 ~~~~~~~~~~~~~~~~l~~~~l~ 286 (1049)
T 3m1i_C 264 LKIPQDNDLIKRQTVLFFQNTLQ 286 (1049)
T ss_dssp CCCCTTCHHHHHHHHHHHHHHHH
T ss_pred CCCCcchhhHHHHHHHHHHHHHH
Confidence 642222 33444455544444
No 6
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=82.24 E-value=30 Score=40.24 Aligned_cols=84 Identities=12% Similarity=0.006 Sum_probs=52.2
Q ss_pred CcchhhhHHHHHHHHH-HHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHH
Q 004881 288 SKWKTVRPLIKSYLRS-TLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQD 366 (725)
Q Consensus 288 ~kw~kl~~liKsyl~s-ll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~ 366 (725)
++|.++.+-.|.++.+ +++.|.+ +++.+-..+..-+..+...- ++..-..++..++..+++++..+|-.|..+|..
T Consensus 78 ~~w~~~~~~~~~~ik~~ll~~l~~-~~~~vr~~~a~~i~~ia~~~--~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~ 154 (852)
T 4fdd_A 78 AHFQNFPNGVTDFIKSECLNNIGD-SSPLIRATVGILITTIASKG--ELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQK 154 (852)
T ss_dssp TSGGGCCHHHHHHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHHHT--TTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHH
T ss_pred HccCCCCHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhc--CccccHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4799998888888887 4444542 22222222222222222211 333344567777888888888899999999999
Q ss_pred HHhccCcc
Q 004881 367 VASGFSSD 374 (725)
Q Consensus 367 l~~~~~~~ 374 (725)
++...+..
T Consensus 155 i~~~~~~~ 162 (852)
T 4fdd_A 155 ICEDSAEI 162 (852)
T ss_dssp HHHHHTTH
T ss_pred HHHHhHHH
Confidence 98876543
No 7
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=78.10 E-value=1e+02 Score=38.09 Aligned_cols=162 Identities=12% Similarity=0.150 Sum_probs=94.7
Q ss_pred HHHHHHhh--cCCcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHh---hcCCC---------chhHHHHHHHHHHH
Q 004881 302 RSTLFMLN--QATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHL---WATGE---------ETVSFHSFLILQDV 367 (725)
Q Consensus 302 ~sll~LL~--~ltd~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~l---Wst~~---------e~vrv~AFl~Lr~l 367 (725)
..++++|- +.+++.+...++.-+..+.+|+...|.++..+|..++.. |..+. ..+|-+|-.++++|
T Consensus 532 ~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L 611 (1204)
T 3a6p_A 532 IELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKM 611 (1204)
T ss_dssp HHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHH
Confidence 34555543 346777777777777788999999998888888877766 43211 25888888899999
Q ss_pred HhccCc---chHHHHHHHHHHHHHhhccccCccchhhhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhhhhh--
Q 004881 368 ASGFSS---DCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTK-- 442 (725)
Q Consensus 368 ~~~~~~---~~le~~LK~~Y~ayv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yIRQLAIhLRnai~~k-- 442 (725)
|...+. ++++.++..+- ..+..-+. ......+.++.-- +=+-. .-..|..--.|+++|--=+++.+.+.
T Consensus 612 ~~~~~~~L~p~~~~i~~~~~-~~l~~~~~--l~~~e~~~L~eal-~~ia~--~~~~~~~~~~~l~~ll~P~~~~w~~~~~ 685 (1204)
T 3a6p_A 612 CRDYPQLVLPNFDMLYNHVK-QLLSNELL--LTQMEKCALMEAL-VLISN--QFKNYERQKVFLEELMAPVASIWLSQDM 685 (1204)
T ss_dssp HHHCHHHHGGGHHHHHHHHH-HHHHSTTT--SCHHHHHHHHHHH-HHHHG--GGCCHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHhhHHHHHHHHHHHHHHH-HHHhCccc--ccHHHHHHHHHHH-HHHhc--cCCCHHHHHHHHHHHHHHHHHHHccHHH
Confidence 998865 44554443322 22221111 2345555555432 22211 11135666677777777666666531
Q ss_pred -----hhhhhhh------------------cccchhHhHHHHHHHHHccc
Q 004881 443 -----KKEAVKK------------------ICSWQYANCIDLWVTYISHC 469 (725)
Q Consensus 443 -----~Kea~k~------------------VYNWQfvhsL~~Ws~VLs~~ 469 (725)
.-..|-. .--|++.||+..-..+|.++
T Consensus 686 ~~~~s~~~~f~~~~G~~~~~~~~~~~d~~~~~r~~l~~~~~~l~~~l~r~ 735 (1204)
T 3a6p_A 686 HRVLSDVDAFIAYVGTDQKSCDPGLEDPCGLNRARMSFCVYSILGVVKRT 735 (1204)
T ss_dssp HHHHHCHHHHHHHHTSSCC--CTTCCTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhcCHHHHHHHhCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHh
Confidence 1111111 01278888888777777763
No 8
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=78.01 E-value=74 Score=38.21 Aligned_cols=65 Identities=9% Similarity=0.004 Sum_probs=48.3
Q ss_pred HHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCc-----------chHHHHHHHHH
Q 004881 320 SLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSS-----------DCFDLCLIKMY 384 (725)
Q Consensus 320 ~L~~l~~llpy~~~f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~~-----------~~le~~LK~~Y 384 (725)
++.-+..+..|+...+..+..++..++.....+...|+..|-..+.++|...+. ++++.++..+.
T Consensus 520 ~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~ 595 (1049)
T 3m1i_C 520 IMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQ 595 (1049)
T ss_dssp HHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHH
Confidence 444556667788888888999999998877666678998888889999886553 45666665544
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=75.05 E-value=1.2e+02 Score=34.58 Aligned_cols=182 Identities=9% Similarity=0.035 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCc-----chHHHHHHHHHHHHHhhccccCccc-hhhhHHHHHHH
Q 004881 336 LLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSS-----DCFDLCLIKMYKAFIGHCKFAEPAL-FKHLQFLRNSF 409 (725)
Q Consensus 336 kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~~-----~~le~~LK~~Y~ayv~~~k~t~~~t-l~~InfMkNs~ 409 (725)
.....++..++.........||..|+.+|.+++...+. ++++.+|..+...+ .. ++.. ...+..+. .+
T Consensus 404 ~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l----~~-~~~v~~~a~~al~-~l 477 (876)
T 1qgr_A 404 PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL----SA-EPRVASNVCWAFS-SL 477 (876)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHT----TS-CHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHH----cC-CHHHHHHHHHHHH-HH
Confidence 34566777788887777778999999999999987643 55666665554432 21 1100 00011111 11
Q ss_pred HHHhc-CC----cc--chhHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccchhHhHHHHHHHHHcccCCCCCccchHHHH
Q 004881 410 VELCS-QD----LL--RSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYII 482 (725)
Q Consensus 410 ~EL~~-lD----~~--~sYq~AF~yIRQLAIhLRnai~~k~Kea~k~VYNWQfvhsL~~Ws~VLs~~~~~s~L~pLiYPL 482 (725)
++-++ .+ +. .+-..-=-|+.++--.|-..+.....+ ...+. ..+++..+.++.... ....|++-++
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~-~~~~r----~~~~~~l~~l~~~~~--~~~~~~~~~l 550 (876)
T 1qgr_A 478 AEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGH-QNNLR----SSAYESLMEIVKNSA--KDCYPAVQKT 550 (876)
T ss_dssp HHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSC-STTHH----HHHHHHHHHHHHTCC--STTHHHHHHH
T ss_pred HHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcc-hhhHH----HHHHHHHHHHHHHCc--hhhHHHHHHH
Confidence 22222 00 00 000000024566666666665532111 01111 345666666666443 2456666666
Q ss_pred HHHHhhhhccc--------CC---CcccchHHHHHHHHHHHHhccC--cceechhHHHHhh
Q 004881 483 IQIINGMATLF--------PG---PRYLPLRCKCIEWLNHLSSSSG--IFIPVTSLMLDVL 530 (725)
Q Consensus 483 VQVi~G~irLi--------Pt---~ryfPLRfh~ir~L~~Ls~~t~--~fIPl~p~LleiL 530 (725)
++.++..+.-. .. ..|.-+|-.++..|..+....| .|.|.+|-++..|
T Consensus 551 ~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l 611 (876)
T 1qgr_A 551 TLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASL 611 (876)
T ss_dssp HHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHH
Confidence 66665554431 11 1123467788888888888777 5566655555444
No 10
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=74.34 E-value=86 Score=32.54 Aligned_cols=65 Identities=11% Similarity=0.103 Sum_probs=38.3
Q ss_pred ccchhHhHHHHHHHHHcccCCCCCccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHhccCcc
Q 004881 451 CSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIF 519 (725)
Q Consensus 451 YNWQfvhsL~~Ws~VLs~~~~~s~L~pLiYPLVQVi~G~irLiPt~ryfPLRfh~ir~L~~Ls~~t~~f 519 (725)
-+|+...+.=+--..|+..+....+++.+..++..++..++ . ...-.|..++..|-+++...+--
T Consensus 378 ~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~---d-~~~~Vr~~a~~~l~~~~~~~~~~ 442 (462)
T 1ibr_B 378 PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK---D-PSVVVRDTAAWTVGRICELLPEA 442 (462)
T ss_dssp SSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGG---C-SCHHHHHHHHHHHHHHHHHGGGG
T ss_pred CChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc---C-CCHHHHHHHHHHHHHHHHhcccc
Confidence 37888776444334444444434455544444444444332 1 23568999999999999876543
No 11
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=71.84 E-value=1.4e+02 Score=33.93 Aligned_cols=191 Identities=10% Similarity=0.067 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHhhcCCC--chhHHHHHHHHHHHHhccCcch---HHHHHHHHHHHHH-----------------------
Q 004881 337 LIRRLIKIAVHLWATGE--ETVSFHSFLILQDVASGFSSDC---FDLCLIKMYKAFI----------------------- 388 (725)
Q Consensus 337 l~k~llK~lv~lWst~~--e~vrv~AFl~Lr~l~~~~~~~~---le~~LK~~Y~ayv----------------------- 388 (725)
....++..++.+-.+.+ ..+|..|+-+|..++...+..+ +..++-.+...+.
T Consensus 495 ~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~ 574 (861)
T 2bpt_A 495 FYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQS 574 (861)
T ss_dssp GHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHH
Confidence 34566667777766433 5799999999999888766542 2222221211111
Q ss_pred -------hhccccCccchhhhHHHHHHHHHHhcCCcc-chhHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc------cch
Q 004881 389 -------GHCKFAEPALFKHLQFLRNSFVELCSQDLL-RSSNKAKVSINNLSRILQLGLQTKKKEAVKKIC------SWQ 454 (725)
Q Consensus 389 -------~~~k~t~~~tl~~InfMkNs~~EL~~lD~~-~sYq~AF~yIRQLAIhLRnai~~k~Kea~k~VY------NWQ 454 (725)
.-++.++..-.|.+.-+...+.+++.-... .-...++..|..|+..+...+..--..-+..+. +|.
T Consensus 575 ~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~ 654 (861)
T 2bpt_A 575 NILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSP 654 (861)
T ss_dssp HHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHH
Confidence 111222223335555555555666654432 334556666666665544333210000000000 111
Q ss_pred -hHhHHHHHHHHHcccCCCCCccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHhccC-cceechhHHHHhhc
Q 004881 455 -YANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSG-IFIPVTSLMLDVLE 531 (725)
Q Consensus 455 -fvhsL~~Ws~VLs~~~~~s~L~pLiYPLVQVi~G~irLiPt~ryfPLRfh~ir~L~~Ls~~t~-~fIPl~p~LleiL~ 531 (725)
-..++.+-+.+.. .+. ..+.|.+..+++.++..++- ++ ..-..|-..+.+|-.|+...| .|.|.++.++..|-
T Consensus 655 vr~~a~~~l~~l~~-~~~-~~~~~~~~~l~~~l~~~l~~-~~-~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~ 729 (861)
T 2bpt_A 655 VSITAVGFIADISN-SLE-EDFRRYSDAMMNVLAQMISN-PN-ARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCV 729 (861)
T ss_dssp HHHHHHHHHHHHHH-HTG-GGGHHHHHHHHHHHHHHHHC-TT-CCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-Hhc-hhccchHHHHHHHHHHHhCC-cc-ccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 0112222222222 222 36778877777777665542 21 234688889999988887653 56666666665553
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=71.81 E-value=69 Score=33.29 Aligned_cols=79 Identities=13% Similarity=0.183 Sum_probs=46.7
Q ss_pred cchhhhHHHHHHHHH-HHHHhhcCCcH-HHHHHHHHHhhhh-hhhhhcchHHHHHHHHHHHHhhcCC--CchhHHHHHHH
Q 004881 289 KWKTVRPLIKSYLRS-TLFMLNQATDS-EILAFSLNRLRTS-IVFFAAFPLLIRRLIKIAVHLWATG--EETVSFHSFLI 363 (725)
Q Consensus 289 kw~kl~~liKsyl~s-ll~LL~~ltd~-~~l~~~L~~l~~l-lpy~~~f~kl~k~llK~lv~lWst~--~e~vrv~AFl~ 363 (725)
.|..+..-.|.++.+ ++.+|.+-+.. ..++.+|..+... .|- ..+| .++-.++..+.++ +..+|..|..+
T Consensus 79 ~~~~l~~~~~~~ik~~ll~~l~~~~~~v~~~~~~i~~ia~~~~~~-~~w~----~ll~~L~~~l~~~~~~~~~r~~al~~ 153 (462)
T 1ibr_B 79 RWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPV-NQWP----ELIPQLVANVTNPNSTEHMKESTLEA 153 (462)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCSSSCSHHHHHHHHHHHHGGG-TCCT----THHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHhccc-cccH----HHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 477787777887776 66666542211 1222233333221 110 1233 4566666667776 66799999999
Q ss_pred HHHHHhccC
Q 004881 364 LQDVASGFS 372 (725)
Q Consensus 364 Lr~l~~~~~ 372 (725)
|+.++....
T Consensus 154 l~~l~~~~~ 162 (462)
T 1ibr_B 154 IGYICQDID 162 (462)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHhCC
Confidence 999998663
No 13
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=61.37 E-value=2.3e+02 Score=34.29 Aligned_cols=204 Identities=10% Similarity=0.067 Sum_probs=100.9
Q ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcc---
Q 004881 298 KSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSD--- 374 (725)
Q Consensus 298 Ksyl~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~~~--- 374 (725)
+..+..++..|.. .+..+=...+..|..++..+ .+.....++..++.........+|-+|..+|..++......
T Consensus 47 ~~il~~Ll~~L~d-~~~~vR~~A~~~L~~l~~~~--~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~ 123 (1230)
T 1u6g_C 47 RKVVKMILKLLED-KNGEVQNLAVKCLGPLVSKV--KEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 123 (1230)
T ss_dssp HHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHTTS--CHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccc
Confidence 3444555666653 44555555555565555433 23455667777788777777789999999999999877654
Q ss_pred ------hHHHHHHHHHHHHHhhccccCccchhhhHHHHHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 004881 375 ------CFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDL-LRSSNKAKVSINNLSRILQLGLQTKKKEAV 447 (725)
Q Consensus 375 ------~le~~LK~~Y~ayv~~~k~t~~~tl~~InfMkNs~~EL~~lD~-~~sYq~AF~yIRQLAIhLRnai~~k~Kea~ 447 (725)
+...++-.+... ... + .......-.-.++.+++...+ ... .|+.++.-.|-..+..... .+
T Consensus 124 ~~~~~~~~~~llp~L~~~----l~~-~-~~~~~~~~al~~l~~~~~~~~~~l~-----~~~~~ll~~l~~~L~~~~~-~v 191 (1230)
T 1u6g_C 124 SALAANVCKKITGRLTSA----IAK-Q-EDVSVQLEALDIMADMLSRQGGLLV-----NFHPSILTCLLPQLTSPRL-AV 191 (1230)
T ss_dssp CCTHHHHHHHHHHHHHHH----HSC-C-SCHHHHHHHHHHHHHHHHHTCSSCT-----TTHHHHHHHHGGGGGCSSH-HH
T ss_pred cchHHHHHHHHHHHHHHH----HcC-C-CchHHHHHHHHHHHHHHHHhHhHHH-----HHHHHHHHHHHHHHcCCcH-HH
Confidence 344444444433 221 1 122333333444445442111 111 1446666666666654211 11
Q ss_pred hhcccchhHhHHHHHHHHHcccCCCCCccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHhccCc-cee----c
Q 004881 448 KKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGI-FIP----V 522 (725)
Q Consensus 448 k~VYNWQfvhsL~~Ws~VLs~~~~~s~L~pLiYPLVQVi~G~irLiPt~ryfPLRfh~ir~L~~Ls~~t~~-fIP----l 522 (725)
+ ..++..-+.++. ...+..+.+++-+|++.+... +. ...|-..++.|..|+...|. |.| +
T Consensus 192 R-------~~a~~al~~l~~-~~~~~~~~~~l~~l~~~L~~~----~~---~~~r~~a~~~l~~l~~~~~~~~~~~l~~l 256 (1230)
T 1u6g_C 192 R-------KRTIIALGHLVM-SCGNIVFVDLIEHLLSELSKN----DS---MSTTRTYIQCIAAISRQAGHRIGEYLEKI 256 (1230)
T ss_dssp H-------HHHHHHHHHHTT-TC----CTTHHHHHHHHHHHT----CS---SCSCTTHHHHHHHHHHHSSGGGTTSCTTH
T ss_pred H-------HHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccC----Cc---hhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1 111222222222 222334556666666655432 11 24566667777777665442 323 4
Q ss_pred hhHHHHhhc
Q 004881 523 TSLMLDVLE 531 (725)
Q Consensus 523 ~p~LleiL~ 531 (725)
.|+++..+.
T Consensus 257 ~~~ll~~l~ 265 (1230)
T 1u6g_C 257 IPLVVKFCN 265 (1230)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhc
Confidence 455555553
No 14
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=59.69 E-value=34 Score=42.02 Aligned_cols=96 Identities=9% Similarity=0.111 Sum_probs=61.0
Q ss_pred hhhhHHHHHHHHHHHHHhh----cCCcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHH-HHhhcCCCchhHHHHHHHHH
Q 004881 291 KTVRPLIKSYLRSTLFMLN----QATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIA-VHLWATGEETVSFHSFLILQ 365 (725)
Q Consensus 291 ~kl~~liKsyl~sll~LL~----~ltd~~~l~~~L~~l~~llpy~~~f~kl~k~llK~l-v~lWst~~e~vrv~AFl~Lr 365 (725)
..++..+...+..++.++. +-++++++..+|..+..++.|+-.---..-.+|..+ ..++ +.+.+|.+|--||.
T Consensus 194 ~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~ 271 (1073)
T 3gjx_A 194 KHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLT 271 (1073)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhc--CChHHHHHHHHHHH
Confidence 4466666666666666543 446788888899999988888633221223456655 3444 34568999999999
Q ss_pred HHHhccCcchHHHHHHHHHHHHHh
Q 004881 366 DVASGFSSDCFDLCLIKMYKAFIG 389 (725)
Q Consensus 366 ~l~~~~~~~~le~~LK~~Y~ayv~ 389 (725)
.|+...-.. .+..+-.+|...+.
T Consensus 272 eIv~k~~~~-~~~~~~~lf~~~~~ 294 (1073)
T 3gjx_A 272 EIAGVSVSQ-YEEQFETLFTLTMM 294 (1073)
T ss_dssp HHHHSCSGG-GHHHHHHHHHHHHH
T ss_pred HHHhccccc-hHHHHHHHHHHHHH
Confidence 988763222 34445667766554
No 15
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=59.53 E-value=94 Score=37.73 Aligned_cols=173 Identities=6% Similarity=0.019 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCc---chHHHHHHHHHHHHHhhccccCccchhhhH-HHHHHHHHH
Q 004881 337 LIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSS---DCFDLCLIKMYKAFIGHCKFAEPALFKHLQ-FLRNSFVEL 412 (725)
Q Consensus 337 l~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~~---~~le~~LK~~Y~ayv~~~k~t~~~tl~~In-fMkNs~~EL 412 (725)
++..++..++..+.+....+|..++.+|..++...+. ++++.++..+ +...+..++ -+.+. -.-.++..+
T Consensus 431 ~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l----~~~L~d~~~--~~~v~~~a~~~l~~~ 504 (1230)
T 1u6g_C 431 QVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGI----IFSLNDKSS--SSNLKIDALSCLYVI 504 (1230)
T ss_dssp HTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHH----HHHTTCSSS--CHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHH----HHHHcCCCC--cchHHHHHHHHHHHH
Confidence 4455666666668877778999999999998887543 3344444333 333222111 01111 111122222
Q ss_pred hc-CCccchhHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccchh-HhHHHHHHHHHcccC-----CCCCccchHHHHHHH
Q 004881 413 CS-QDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQY-ANCIDLWVTYISHCI-----HDYDLQPLLYIIIQI 485 (725)
Q Consensus 413 ~~-lD~~~sYq~AF~yIRQLAIhLRnai~~k~Kea~k~VYNWQf-vhsL~~Ws~VLs~~~-----~~s~L~pLiYPLVQV 485 (725)
+. +.+.. .. .|+.++--.|=+++.. -||.. ..++..+..++.... ....+.|.+-.+++.
T Consensus 505 ~~~~~~~~-~~---~~l~~llp~L~~~l~d---------~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ 571 (1230)
T 1u6g_C 505 LCNHSPQV-FH---PHVQALVPPVVACVGD---------PFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTC 571 (1230)
T ss_dssp HHSSCGGG-GH---HHHTTTHHHHHHHHTC---------SSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHH
T ss_pred HHhCCHHH-HH---hHHHHHHHHHHHHHcc---------cchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHH
Confidence 21 11110 10 1333333333222222 13433 346667776664321 134677777777777
Q ss_pred HhhhhcccCCCcccchHHHHHHHHHHHHhccC-cceechhHHHHhh
Q 004881 486 INGMATLFPGPRYLPLRCKCIEWLNHLSSSSG-IFIPVTSLMLDVL 530 (725)
Q Consensus 486 i~G~irLiPt~ryfPLRfh~ir~L~~Ls~~t~-~fIPl~p~LleiL 530 (725)
++..+.- +-.-..+|-.+++.|-.|+...| .+.|.+|-++.+|
T Consensus 572 ll~~l~~--~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L 615 (1230)
T 1u6g_C 572 TIKRLKA--ADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIF 615 (1230)
T ss_dssp HHHHHSC--SSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHH
T ss_pred HHHHHhc--cCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHH
Confidence 7766542 12233688888888888887765 3444444444444
No 16
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=59.32 E-value=1.9e+02 Score=34.16 Aligned_cols=181 Identities=10% Similarity=0.063 Sum_probs=92.3
Q ss_pred cHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccC--------------cchHHH
Q 004881 313 DSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFS--------------SDCFDL 378 (725)
Q Consensus 313 d~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~--------------~~~le~ 378 (725)
.+-+-..++.-+..+..++ .+..+..++..+++.-.++.-.||..|..+|.+++...+ .++++.
T Consensus 471 ~p~vr~~a~~~lg~~~~~~--~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ 548 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQL--TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEI 548 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGS--CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHH
T ss_pred CceehHHHHHHHHHHHhhC--CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHH
Confidence 3444444555555555554 366788888888887765555689999999999887421 255666
Q ss_pred HHHHHHHHHHhhccccCccchhhhHHHHHHH---HHHhcCCccchhHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccchh
Q 004881 379 CLIKMYKAFIGHCKFAEPALFKHLQFLRNSF---VELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQY 455 (725)
Q Consensus 379 ~LK~~Y~ayv~~~k~t~~~tl~~InfMkNs~---~EL~~lD~~~sYq~AF~yIRQLAIhLRnai~~k~Kea~k~VYNWQf 455 (725)
+|..+...+-+... ++........+-.|+ ++-++-+.. -|+-+|.-+|-+.+..-.++ --|-++
T Consensus 549 ll~~L~~ll~~~~~--~~~~~~~~e~l~~al~~vv~~~~~~~~-------p~~~~l~~~L~~~l~~~~~~----~~~~~~ 615 (960)
T 1wa5_C 549 LLKNLIALILKHGS--SPEKLAENEFLMRSIFRVLQTSEDSIQ-------PLFPQLLAQFIEIVTIMAKN----PSNPRF 615 (960)
T ss_dssp HHHHHHHHHHTTCC--CHHHHTSCHHHHHHHHHHHHHHTTTTG-------GGHHHHHHHHHHHHHHHTTS----CCCHHH
T ss_pred HHHHHHHHHHhccC--CCCcccccHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHhC----CCCcHH
Confidence 66665554333210 000000111222333 333332221 23334444444444321110 012222
Q ss_pred H-hHHHHHHHHHcccCCCC---CccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHH
Q 004881 456 A-NCIDLWVTYISHCIHDY---DLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLS 513 (725)
Q Consensus 456 v-hsL~~Ws~VLs~~~~~s---~L~pLiYPLVQVi~G~irLiPt~ryfPLRfh~ir~L~~Ls 513 (725)
. .+++.-+.++.+. ..+ ++-+.++|+++-++. .....|+|--|.++..|....
T Consensus 616 ~~~~~e~l~~l~~~~-~~~~~~~~~~~~~p~~~~iL~----~~~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 616 THYTFESIGAILNYT-QRQNLPLLVDSMMPTFLTVFS----EDIQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp HHHHHHHHHHHHHTS-CGGGHHHHHHHHHHHHHHHHH----TTCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHH----hhhHhhHHHHHHHHHHHHHhc
Confidence 2 1455555555541 112 244555565555543 123568888888888888776
No 17
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=59.32 E-value=2e+02 Score=35.33 Aligned_cols=76 Identities=12% Similarity=0.094 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhhcCCcH------H-HHHHHH-HHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHH
Q 004881 297 IKSYLRSTLFMLNQATDS------E-ILAFSL-NRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVA 368 (725)
Q Consensus 297 iKsyl~sll~LL~~ltd~------~-~l~~~L-~~l~~llpy~~~f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~ 368 (725)
=+.|+..++..|-++.+. . +++..+ --+.++-.|+..+++.++..+..+++....+...|+-+|-.++.++|
T Consensus 515 E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~ 594 (1073)
T 3gjx_A 515 EKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIA 594 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 456777777776655431 2 333322 35677888999999999999999999888777777766666666666
Q ss_pred hccC
Q 004881 369 SGFS 372 (725)
Q Consensus 369 ~~~~ 372 (725)
...+
T Consensus 595 ~~C~ 598 (1073)
T 3gjx_A 595 QKCR 598 (1073)
T ss_dssp HHTG
T ss_pred HHHH
Confidence 6443
No 18
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=57.98 E-value=1.3e+02 Score=36.52 Aligned_cols=52 Identities=12% Similarity=0.018 Sum_probs=39.5
Q ss_pred HHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhcc
Q 004881 320 SLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGF 371 (725)
Q Consensus 320 ~L~~l~~llpy~~~f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~ 371 (725)
+..-+..+-.|+..+|..++.+|..++..-..+...+.-+|--.+++||...
T Consensus 520 ~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c 571 (1023)
T 4hat_C 520 IMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKC 571 (1023)
T ss_dssp HHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence 4456667788999999999999999888776665667766667777777754
No 19
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=51.85 E-value=2.3e+02 Score=33.32 Aligned_cols=80 Identities=9% Similarity=0.082 Sum_probs=51.0
Q ss_pred ccchhHhHHHHHHHHHcccC------C----CCCccchHHHHHHHHhhhhcccCCC------------cccchHHHHHHH
Q 004881 451 CSWQYANCIDLWVTYISHCI------H----DYDLQPLLYIIIQIINGMATLFPGP------------RYLPLRCKCIEW 508 (725)
Q Consensus 451 YNWQfvhsL~~Ws~VLs~~~------~----~s~L~pLiYPLVQVi~G~irLiPt~------------ryfPLRfh~ir~ 508 (725)
.-+-...++.||+.+..... + ...++|++-+|+++++..++ .|+. .|-.+|-.+...
T Consensus 366 ~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~p~~~~~~~~d~~e~~~f~~~R~~~~~~ 444 (971)
T 2x1g_F 366 EESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSE-QPDEKSLAKWSSDDLECFRCYRQDISDT 444 (971)
T ss_dssp TCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTS-CCCTTTTSCSCHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhc-CCCcccccccCHhHHHHHHHHHHHHHHH
Confidence 44557899999998865221 1 12457888889999998885 4643 334577777777
Q ss_pred HHHHHhccC--cceechhHHHHhhc
Q 004881 509 LNHLSSSSG--IFIPVTSLMLDVLE 531 (725)
Q Consensus 509 L~~Ls~~t~--~fIPl~p~LleiL~ 531 (725)
|..++..-+ ++=++.+++-+.|.
T Consensus 445 l~~~~~~~~~~~l~~~~~~l~~~l~ 469 (971)
T 2x1g_F 445 FMYCYDVLNDYILEILAAMLDEAIA 469 (971)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 777776544 22345555555554
No 20
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=51.83 E-value=1.6e+02 Score=35.76 Aligned_cols=97 Identities=7% Similarity=0.114 Sum_probs=60.4
Q ss_pred hhhhHHHHHHHHHHHHHhhcC----CcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHH-HhhcCCCchhHHHHHHHHH
Q 004881 291 KTVRPLIKSYLRSTLFMLNQA----TDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAV-HLWATGEETVSFHSFLILQ 365 (725)
Q Consensus 291 ~kl~~liKsyl~sll~LL~~l----td~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv-~lWst~~e~vrv~AFl~Lr 365 (725)
..++..+...+..+++++.++ ++++++..+|+.+..++.|+-.---..-.++..++ .+++ .+.+|.+|--||.
T Consensus 182 ~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~ 259 (1023)
T 4hat_C 182 LHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLT 259 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence 456666667676666665433 56788888999998877774322112234556666 5553 4568999999999
Q ss_pred HHHhc-cCcc--hHHHHHHHHHHHHHh
Q 004881 366 DVASG-FSSD--CFDLCLIKMYKAFIG 389 (725)
Q Consensus 366 ~l~~~-~~~~--~le~~LK~~Y~ayv~ 389 (725)
.++.. .+.+ -.+..+-.+|...+.
T Consensus 260 eIv~~~~~~~~~~~~~~l~~lf~~~l~ 286 (1023)
T 4hat_C 260 EVSNLKIPQDNDLIKRQTVLFFQNTLQ 286 (1023)
T ss_dssp HHHTSCCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHccccCCchHHHHHHHHHHHHHHHH
Confidence 98862 2122 355566666666543
No 21
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=50.29 E-value=3.2e+02 Score=32.23 Aligned_cols=31 Identities=13% Similarity=-0.009 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHHhccCcchHHHHHHHHHH
Q 004881 355 TVSFHSFLILQDVASGFSSDCFDLCLIKMYK 385 (725)
Q Consensus 355 ~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~ 385 (725)
++|.+|--+|..++..++..+++.++.-+..
T Consensus 376 s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~ 406 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNEVLVTNIFLAHMKG 406 (960)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHcchhHHHHHHHHHHH
Confidence 6899999999999999887777777655443
No 22
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=49.11 E-value=1.9e+02 Score=27.80 Aligned_cols=58 Identities=9% Similarity=0.007 Sum_probs=39.8
Q ss_pred CcHHHHHHHHHHhhhhhhhhh-cchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 004881 312 TDSEILAFSLNRLRTSIVFFA-AFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVAS 369 (725)
Q Consensus 312 td~~~l~~~L~~l~~llpy~~-~f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~ 369 (725)
++..+...++..+..+..-+. .|......++..++..++.....||-+|..+|..++.
T Consensus 69 ~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~ 127 (242)
T 2qk2_A 69 SNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYA 127 (242)
T ss_dssp SCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 444444444444444332222 3556778889999999988888899999999988766
No 23
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=46.79 E-value=27 Score=39.29 Aligned_cols=94 Identities=15% Similarity=0.162 Sum_probs=68.9
Q ss_pred hhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhhccccCccchhhhHHHH
Q 004881 327 SIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLR 406 (725)
Q Consensus 327 llpy~~~f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~ayv~~~k~t~~~tl~~InfMk 406 (725)
+-.|+-.||.+...-+.+++.|.-..+..+|+.|.=-|=.+|..---+-.-.+|-++.. ..--.-++..+
T Consensus 52 I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlLq----------tdd~~E~~~V~ 121 (507)
T 3u0r_A 52 IPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLLQ----------TDDSAEFNLVN 121 (507)
T ss_dssp HHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHTT----------CCCHHHHHHHH
T ss_pred HHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHHh----------ccchHHHHHHH
Confidence 45689999999999999999999988888999876555555554001112223322222 23445678889
Q ss_pred HHHHHHhcCCccchhHHHHHHHHH
Q 004881 407 NSFVELCSQDLLRSSNKAKVSINN 430 (725)
Q Consensus 407 Ns~~EL~~lD~~~sYq~AF~yIRQ 430 (725)
||+++|+-+|+..+-.--|.-|.+
T Consensus 122 ~sL~sllk~Dpk~tl~~lf~~i~~ 145 (507)
T 3u0r_A 122 NALLSIFKMDAKGTLGGLFSQILQ 145 (507)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHcc
Confidence 999999999999999988888766
No 24
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=44.24 E-value=2.8e+02 Score=30.96 Aligned_cols=134 Identities=12% Similarity=0.051 Sum_probs=73.5
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhcch-HHHHHHHHH---HHHhhc---CCCch-hHHHHHHHHHHHHhc
Q 004881 299 SYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFP-LLIRRLIKI---AVHLWA---TGEET-VSFHSFLILQDVASG 370 (725)
Q Consensus 299 syl~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~-kl~k~llK~---lv~lWs---t~~e~-vrv~AFl~Lr~l~~~ 370 (725)
.|..+++++|...+..+++.++|.-+..++.- -+|- .+++-|.+. .-.+|. .+++. ...+||.++-.++..
T Consensus 77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~-~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSS-DKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHC-SSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhc-CcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 56678999999999999999999877765432 1111 222222211 111332 33443 557788776666543
Q ss_pred cCcchHHHHHHHHHH--HHHhhccccCccchhhhHHHHHHHHHHhcCCccchhHHHHHHHHH-----HHHHHHHhhh
Q 004881 371 FSSDCFDLCLIKMYK--AFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINN-----LSRILQLGLQ 440 (725)
Q Consensus 371 ~~~~~le~~LK~~Y~--ayv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yIRQ-----LAIhLRnai~ 440 (725)
.+. -+..+...+. -|+..-+ ++...+.--.--+|+.+|... -.|+.+|.-.+. |--.+|+++.
T Consensus 156 ~~~--~~~~l~~l~~~~~~~~~L~--~~~~~~~~~i~v~~L~~Ll~~---~~~R~~f~~~~~~~~~~l~~il~~~~~ 225 (480)
T 1ho8_A 156 GLH--NVKLVEKLLKNNNLINILQ--NIEQMDTCYVCIRLLQELAVI---PEYRDVIWLHEKKFMPTLFKILQRATD 225 (480)
T ss_dssp TTC--CHHHHHHHHHCHHHHHHHH--CTTCHHHHHHHHHHHHHHHTS---HHHHHHHHTTHHHHHHHHHHHHHHHHC
T ss_pred CCc--cHhHHHHHhhhHHHHHHhc--cccCCchHHHHHHHHHHHhcc---hhHHHHHHHcccchhHHHHHHHHHhhc
Confidence 322 1334444443 3333222 222223323567888888876 468888864443 3334566653
No 25
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=42.48 E-value=4.7e+02 Score=30.48 Aligned_cols=148 Identities=10% Similarity=0.084 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhhccccCccchhhhH---HHHHHHHHHhcCCccchhHHHHHHHHHHH
Q 004881 356 VSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQ---FLRNSFVELCSQDLLRSSNKAKVSINNLS 432 (725)
Q Consensus 356 vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~ayv~~~k~t~~~tl~~In---fMkNs~~EL~~lD~~~sYq~AF~yIRQLA 432 (725)
.|..+.-+|+.++...+..++..++..+-.. +.+. .+...|..+. +.-.+++|-+.-+.. . ++-++-
T Consensus 423 ~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~-l~~~--~~~~~w~~~eaal~al~~i~~~~~~~~~-~------~l~~l~ 492 (963)
T 2x19_B 423 YRVDISDTLMYVYEMLGAELLSNLYDKLGRL-LTSS--EEPYSWQHTEALLYGFQSIAETIDVNYS-D------VVPGLI 492 (963)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH-HHTC--CCSCCHHHHHHHHHHHHHHTTSCCSSCC-S------HHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHH-HHhc--CCCCchHHHHHHHHHHHHHHhhcCchhh-H------HHHHHH
Confidence 4667777788888777766666665544333 2221 1122343333 334444443322211 1 112211
Q ss_pred HHHHHhhhhhhhhhhhhcccchhHhHHHHHHHHHcccCCCCCccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHH
Q 004881 433 RILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHL 512 (725)
Q Consensus 433 IhLRnai~~k~Kea~k~VYNWQfvhsL~~Ws~VLs~~~~~s~L~pLiYPLVQVi~G~irLiPt~ryfPLRfh~ir~L~~L 512 (725)
-.|-+ +.. +. .. .-...+.+|.=|+..+..+. ..|.+++. .++..+. . -+++-+++.+|.+|
T Consensus 493 ~~l~~-l~~---~~-~~-vr~~~~~~l~~~~~~l~~~~--~~l~~vl~----~l~~~l~---~---~~V~~~A~~al~~l 554 (963)
T 2x19_B 493 GLIPR-ISI---SN-VQ-LADTVMFTIGALSEWLADHP--VMINSVLP----LVLHALG---N---PELSVSSVSTLKKI 554 (963)
T ss_dssp HHGGG-SCC---CS-HH-HHHHHHHHHHHTHHHHHHCH--HHHTTTHH----HHHHHTT---C---GGGHHHHHHHHHHH
T ss_pred HHHHh-CCC---Cc-HH-HHHHHHHHHHHHHHHHHhCH--HHHHHHHH----HHHHHhC---C---chHHHHHHHHHHHH
Confidence 11110 111 00 01 12345556666777776432 23444444 4443332 1 47899999999999
Q ss_pred HhccCc-ceechhHHHHhhc
Q 004881 513 SSSSGI-FIPVTSLMLDVLE 531 (725)
Q Consensus 513 s~~t~~-fIPl~p~LleiL~ 531 (725)
++.++. +.|.++-|+..|.
T Consensus 555 ~~~~~~~l~p~~~~il~~l~ 574 (963)
T 2x19_B 555 CRECKYDLPPYAANIVAVSQ 574 (963)
T ss_dssp HHHTGGGCTTTHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 987654 4465555555443
No 26
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=41.43 E-value=4.4e+02 Score=29.87 Aligned_cols=57 Identities=11% Similarity=0.156 Sum_probs=38.4
Q ss_pred CccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHhcc-CcceechhHHHHhhcc
Q 004881 474 DLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSS-GIFIPVTSLMLDVLEY 532 (725)
Q Consensus 474 ~L~pLiYPLVQVi~G~irLiPt~ryfPLRfh~ir~L~~Ls~~t-~~fIPl~p~LleiL~s 532 (725)
.++|.+-.+++.++..+.- +..-..+|-.++..+-+|+... +.|.|.+|.++..|..
T Consensus 684 ~~~~~~~~i~~~l~~~l~~--~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~ 741 (876)
T 1qgr_A 684 NIIPFCDEVMQLLLENLGN--ENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQ 741 (876)
T ss_dssp GGHHHHHHHHHHHHHHHTC--TTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHhCC--ccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Confidence 5777777777777766542 1122458888888888887643 3577877777777654
No 27
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=41.14 E-value=2.2e+02 Score=28.01 Aligned_cols=96 Identities=11% Similarity=0.229 Sum_probs=62.2
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhcc----hHHHHHHHH------------HHHHhhcCCCchhHHHHHHH
Q 004881 300 YLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAF----PLLIRRLIK------------IAVHLWATGEETVSFHSFLI 363 (725)
Q Consensus 300 yl~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~f----~kl~k~llK------------~lv~lWst~~e~vrv~AFl~ 363 (725)
|...++.-|..+.|++-..+.-+-+....+|+..- +++.|.+.| .+-.+|.++....|.+|...
T Consensus 5 ~~~~i~~~L~~~ad~~~a~~~~~~~k~~~~~lGVr~P~lR~laK~~~k~~~~~~~~~~~~~~~~L~~~~~~E~r~~ai~~ 84 (232)
T 3jxy_A 5 FVKALQEHFTAHQNPEKAEPMARYMKNHFLFLGIQTPERRQLLKDIIQIHTLPDQKDFQIIIRELWDLPEREFQAAALDI 84 (232)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTSSBCCCCCHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHTSSBHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHCCCCCeeeccChHHHHHHHHHHHHhccccchhhHHHHHHHHhcCcHHHHHHHHHHH
Confidence 45678888999999998887666665544544332 345666655 34559998876799999998
Q ss_pred HHHHHhccCcchHHHHHHHHHHHHHhhccccCccchhhhHHH
Q 004881 364 LQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFL 405 (725)
Q Consensus 364 Lr~l~~~~~~~~le~~LK~~Y~ayv~~~k~t~~~tl~~InfM 405 (725)
+......+....++ .+..||.. .++|..+-..
T Consensus 85 l~~~~k~~~~~~l~-----~~~~~l~~-----~~nWd~~D~~ 116 (232)
T 3jxy_A 85 MQKYKKHINETHIP-----FLEELIVT-----KSWWDSVDSI 116 (232)
T ss_dssp HHHTGGGCCGGGHH-----HHHHHHTS-----SCCHHHHHHH
T ss_pred HHHHHHhCCHHHHH-----HHHHHHcc-----CCChHHHHHh
Confidence 88655444444443 23456652 4567766544
No 28
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=40.26 E-value=2.8e+02 Score=29.83 Aligned_cols=70 Identities=19% Similarity=0.056 Sum_probs=44.1
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHhhhhhhhh-hcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 004881 301 LRSTLFMLNQATDSEILAFSLNRLRTSIVFF-AAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASG 370 (725)
Q Consensus 301 l~sll~LL~~ltd~~~l~~~L~~l~~llpy~-~~f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~ 370 (725)
+..++++|..-++..+...++..|..+...- ..-......++..++.+-.+++..++..|..+|.+++..
T Consensus 204 l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 274 (528)
T 4b8j_A 204 LLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG 274 (528)
T ss_dssp HHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC
Confidence 4455666644466777766666666543321 011123355677777777777778898898899998854
No 29
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=40.10 E-value=3.6e+02 Score=33.11 Aligned_cols=55 Identities=18% Similarity=0.146 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhhhhhhhhcchHHH---HHHHHHHHHhhcCCCchhHHHHHHHHHHHHhcc
Q 004881 314 SEILAFSLNRLRTSIVFFAAFPLLI---RRLIKIAVHLWATGEETVSFHSFLILQDVASGF 371 (725)
Q Consensus 314 ~~~l~~~L~~l~~llpy~~~f~kl~---k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~ 371 (725)
..++..+|..+..++.|+-. .-+. ..++..++.+.+ ...+|.+|.-||..++...
T Consensus 221 ~~l~~~aL~~l~~~l~Wi~~-~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 221 CRVGVAALNTLAGYIDWVSM-SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp HHHHHHHHHHHHTTTTTSCH-HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhccCH-HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence 35777788888777666332 1111 136666666654 4679999999999999865
No 30
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=38.93 E-value=3.3e+02 Score=27.80 Aligned_cols=151 Identities=12% Similarity=0.140 Sum_probs=74.4
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchHHH-----HHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchH
Q 004881 302 RSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLI-----RRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCF 376 (725)
Q Consensus 302 ~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~kl~-----k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~~~~l 376 (725)
..++.||..-++..+....+..|..++. .++... ...+..++.+..+++..++.-|-.+|.+++... ....
T Consensus 127 ~~Ll~LL~~~~~~~v~~~A~~ALsnl~~---~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~-~~~~ 202 (296)
T 1xqr_A 127 RKLLRLLDRDACDTVRVKALFAISCLVR---EQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH-PEHK 202 (296)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHT---TCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHc---CCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-hHHH
Confidence 3456666654456666666666655431 222221 135567788888777778887778888888763 3332
Q ss_pred HHHHH-HHHHHHHhhccccCccchhhhHHHHHHHHHHhcCCccchhHHHHHHHHH----HHHHHHHhhhh-hhhhhhhhc
Q 004881 377 DLCLI-KMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINN----LSRILQLGLQT-KKKEAVKKI 450 (725)
Q Consensus 377 e~~LK-~~Y~ayv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yIRQ----LAIhLRnai~~-k~Kea~k~V 450 (725)
+.+.. ++-..+|.--+..++ ..+.-.-.++..|... .+.+....++ |...|+..+.. +.+|+++.+
T Consensus 203 ~~vv~~g~i~~Lv~LL~~~d~---~v~~~al~aL~~l~~~-----~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~ 274 (296)
T 1xqr_A 203 GTLCSMGMVQQLVALVRTEHS---PFHEHVLGALCSLVTD-----FPQGVRECREPELGLEELLRHRCQLLQQHEEYQEE 274 (296)
T ss_dssp HHHHHTTHHHHHHHHHTSCCS---THHHHHHHHHHHHHTT-----CHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHcCCHHHHHHHHcCCCh---hHHHHHHHHHHHHHhC-----ChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHH
Confidence 22221 222233322221111 1111112222222221 2333333332 45556555443 236777777
Q ss_pred ccchhHhHHHHHHHHHcc
Q 004881 451 CSWQYANCIDLWVTYISH 468 (725)
Q Consensus 451 YNWQfvhsL~~Ws~VLs~ 468 (725)
|.. |..+|....+.
T Consensus 275 ~~~----~~~il~~~f~~ 288 (296)
T 1xqr_A 275 LEF----CEKLLQTCFSS 288 (296)
T ss_dssp HHH----HHHHHHHHCC-
T ss_pred HHH----HHHHHHHHcCC
Confidence 743 77888877753
No 31
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=36.25 E-value=3e+02 Score=29.71 Aligned_cols=71 Identities=7% Similarity=-0.007 Sum_probs=47.0
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhc--chHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhcc
Q 004881 300 YLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAA--FPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGF 371 (725)
Q Consensus 300 yl~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~--f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~ 371 (725)
.+..++.+|.. ++.++...++..|..+...-.+ -......++..++.+..+++..++..|..+|.+|+...
T Consensus 216 ~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~ 288 (530)
T 1wa5_B 216 AMEPILGLFNS-NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP 288 (530)
T ss_dssp CHHHHHHGGGS-CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred cHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 34556777766 6777777777666665422101 11234566777888887777789999999999998653
No 32
>3faj_A ORF131, putative uncharacterized protein; archaeal virus, extremophiles, bicaudavirus, structural PROT binding protein; 1.70A {Acidianus two-tailed virus}
Probab=35.49 E-value=51 Score=30.42 Aligned_cols=62 Identities=11% Similarity=0.233 Sum_probs=44.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHhH
Q 004881 561 RNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNI 626 (725)
Q Consensus 561 ~~~qd~v~~~~~eLL~e~l~~~s~sIaFPEl~~p~i~~LKr~~K~~k~~~~~~~lk~Li~kie~n~ 626 (725)
..+...-...++.+|..|+ +.-|+|||+.+ =+.-...+++.+..+.....++.+|..|.+-.
T Consensus 25 epkKgdYagg~ikiL~~F~---~G~iGYPevsL-RLAGEEAnl~~sG~E~~keaIHeiIK~IreA~ 86 (151)
T 3faj_A 25 EPKKGDYAGGAVKILDMFE---NGQLGYPEVTL-KLAGEEANARRAGDERTKEAIHAIVKMISDAM 86 (151)
T ss_dssp --CTTCHHHHHHHHHHHHH---TTCCEETHHHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHH---cCCCCCceeee-hhcchhhhhcccChHHHHHHHHHHHHHHHHHh
Confidence 3344445556788999885 57899999984 44556667777777777888888888887665
No 33
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=30.46 E-value=4.1e+02 Score=28.83 Aligned_cols=98 Identities=15% Similarity=0.089 Sum_probs=47.8
Q ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchHHHHHH-HHHHHHHhhccccCccchhhhHHHHHHHHHHhcCCccch
Q 004881 342 IKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLI-KMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRS 420 (725)
Q Consensus 342 lK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~~~~le~~LK-~~Y~ayv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~s 420 (725)
+-.++.+-.++...++-.|.-+|.+|+... ..+.+.++. +....++.-....+. .-..+.+++|++.-|..+.....
T Consensus 164 ip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~-~~~r~~i~~~g~i~~Ll~lL~~~~~-~~~~~~~~~~a~~~L~nl~~~~~ 241 (529)
T 3tpo_A 164 IPAFISLLASPHAHISEQAVWALGNIAGAG-SAFRDLVIKHGAIDPLLALLAVPDL-STLACGYLRNLTWTLSNLCRNKN 241 (529)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTCHHHHHHTTCSSCG-GGSCHHHHHHHHHHHHHHHCCCT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhccC-HHHHHHHHHcCCcHHHHHHHhccch-hHhHHHHHHHHHHHHHHHHhccc
Confidence 445666667777788888888999998643 233333332 122222332222111 11234455666655555433333
Q ss_pred hHHHHHHHHHHHHHHHHhhhh
Q 004881 421 SNKAKVSINNLSRILQLGLQT 441 (725)
Q Consensus 421 Yq~AF~yIRQLAIhLRnai~~ 441 (725)
....+..++++--.|-..+.+
T Consensus 242 ~~~~~~~~~~~lp~L~~LL~~ 262 (529)
T 3tpo_A 242 PAPPLDAVEQILPTLVRLLHH 262 (529)
T ss_dssp TCCCHHHHHHHHHHHHHHTTS
T ss_pred chhhHHHHhhHHHHHHHHhcC
Confidence 333344444443344444443
No 34
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=29.61 E-value=7.3e+02 Score=29.77 Aligned_cols=207 Identities=12% Similarity=0.035 Sum_probs=106.6
Q ss_pred cHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHH--hhcCCCchhHHHHHHHHHHHHhccCc---chHHHHHHHHHHHH
Q 004881 313 DSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVH--LWATGEETVSFHSFLILQDVASGFSS---DCFDLCLIKMYKAF 387 (725)
Q Consensus 313 d~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~--lWst~~e~vrv~AFl~Lr~l~~~~~~---~~le~~LK~~Y~ay 387 (725)
.+.+....+.-+..+..|+...|..+..+|..++. --..+...||..|...++++|...+. ++++.+|..+-..+
T Consensus 508 hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL 587 (980)
T 3ibv_A 508 HPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLL 587 (980)
T ss_dssp CHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGG
T ss_pred CHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhh
Confidence 35555566666777888999999877777777666 44445567898888888888886653 55666553332211
Q ss_pred HhhccccCc-c-------------chhhhHHHHHHHHHHh---cCCccchhHHHHHHHHHHHHHHHH----hhhhhhh--
Q 004881 388 IGHCKFAEP-A-------------LFKHLQFLRNSFVELC---SQDLLRSSNKAKVSINNLSRILQL----GLQTKKK-- 444 (725)
Q Consensus 388 v~~~k~t~~-~-------------tl~~InfMkNs~~EL~---~lD~~~sYq~AF~yIRQLAIhLRn----ai~~k~K-- 444 (725)
.......+. . +....-.+-.++.=|. +.++. .-..|+++|.--|=+ .+...++
T Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e----~~~~~l~~ll~pl~~~l~~~l~~~~~~~ 663 (980)
T 3ibv_A 588 NISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPE----EQALYCDSLINALIGKANAALSSDLSAL 663 (980)
T ss_dssp CCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHH----HHHHHHHHHHHHHHHHHHHHHTTSCC--
T ss_pred cCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHH----HHHHHHHHHHHHHHHHHHHHHhhcccCc
Confidence 111110000 0 0111122222333232 22222 223466665444332 2222111
Q ss_pred hhhhhcccchhHhHHHHHHHHHcccCCC--CCccc---hHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHhccCc-
Q 004881 445 EAVKKICSWQYANCIDLWVTYISHCIHD--YDLQP---LLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGI- 518 (725)
Q Consensus 445 ea~k~VYNWQfvhsL~~Ws~VLs~~~~~--s~L~p---LiYPLVQVi~G~irLiPt~ryfPLRfh~ir~L~~Ls~~t~~- 518 (725)
+. +. -+|++=.|..-+++--++ ....| -+-+..++++-++.-.| ...+.|=.+.+.+-|+...-|.
T Consensus 664 ~~---~~---~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~--~~~~irea~~~~~~r~i~~lg~~ 735 (980)
T 3ibv_A 664 EN---II---SVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMG--FNEDIRGAVRFTSGRIINVVGPD 735 (980)
T ss_dssp CH---HH---HHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSC--CSHHHHHHHHHHHHHHTTTTHHH
T ss_pred cH---HH---HHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHHccHh
Confidence 22 11 566666676666642211 12233 22344444444333333 5567888888888887765544
Q ss_pred ceechhHHHHhhc
Q 004881 519 FIPVTSLMLDVLE 531 (725)
Q Consensus 519 fIPl~p~LleiL~ 531 (725)
..|.+|-+++.|-
T Consensus 736 ~~p~lp~~i~~ll 748 (980)
T 3ibv_A 736 MLPKVPQLISILL 748 (980)
T ss_dssp HTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5577766666553
No 35
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=28.73 E-value=1.4e+02 Score=28.64 Aligned_cols=77 Identities=13% Similarity=0.018 Sum_probs=49.2
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHhhhhhhhh---hcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcch
Q 004881 299 SYLRSTLFMLNQATDSEILAFSLNRLRTSIVFF---AAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDC 375 (725)
Q Consensus 299 syl~sll~LL~~ltd~~~l~~~L~~l~~llpy~---~~f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~~~~ 375 (725)
..+..++..|.+ .++.+=..++.-|..++-.+ ..+...+..++..++.+...+...+|-+|+-+|-.++...+...
T Consensus 133 ~ll~~l~~~l~~-~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~ 211 (242)
T 2qk2_A 133 AQQESIVESLSN-KNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKA 211 (242)
T ss_dssp HHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHH
Confidence 344445555543 34555455555554433222 12455667888888888877778899999999999988766543
Q ss_pred H
Q 004881 376 F 376 (725)
Q Consensus 376 l 376 (725)
+
T Consensus 212 ~ 212 (242)
T 2qk2_A 212 V 212 (242)
T ss_dssp H
T ss_pred H
Confidence 3
No 36
>3dt5_A Uncharacterized protein AF_0924; structural genomics, APC7732, unknown function, PSI-2, prote structure initiative; HET: MSE; 1.94A {Archaeoglobus fulgidus}
Probab=25.96 E-value=53 Score=29.03 Aligned_cols=29 Identities=21% Similarity=0.143 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCccccc
Q 004881 563 FREDCVFSAIELLSAHFAQWSYHISFPEL 591 (725)
Q Consensus 563 ~qd~v~~~~~eLL~e~l~~~s~sIaFPEl 591 (725)
--|-++++++++|.||+.+-...|+.||-
T Consensus 97 aldvlweeflevlkeyytlsgteislpek 125 (135)
T 3dt5_A 97 ALDVLWEEFLEVLKEYYTLSGTEISLPEK 125 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHhcccCcEecCCCC
Confidence 34778999999999999999999999984
No 37
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=25.91 E-value=1.1e+02 Score=24.22 Aligned_cols=38 Identities=11% Similarity=0.016 Sum_probs=31.2
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhhcc
Q 004881 194 LLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGA 231 (725)
Q Consensus 194 ~lT~~~v~~W~~~l~~~~sl~alr~lv~AFRaA~~~~~ 231 (725)
.||...|..|...+....+...+++.+.++|++.....
T Consensus 45 ~it~~~i~~~~~~l~~~~~~~t~~~~~~~l~~~~~~a~ 82 (103)
T 2oxo_A 45 DITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAI 82 (103)
T ss_dssp GCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 48999999999998777788889888888887766543
No 38
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=24.93 E-value=4.2e+02 Score=27.17 Aligned_cols=80 Identities=18% Similarity=0.186 Sum_probs=43.9
Q ss_pred CCCcchhhhHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhhhhhh--hhcchHHHH--HHHHHHHHhhcCC-CchhHHHH
Q 004881 286 NNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVF--FAAFPLLIR--RLIKIAVHLWATG-EETVSFHS 360 (725)
Q Consensus 286 ~~~kw~kl~~liKsyl~sll~LL~~ltd~~~l~~~L~~l~~llpy--~~~f~kl~k--~llK~lv~lWst~-~e~vrv~A 360 (725)
.+.+|...... +..++++|. -.|+++....+..|+.++.. -.....+.+ .++..++.+..++ ...+|..|
T Consensus 11 ~~~~w~~~~~~----l~~l~~~l~-s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a 85 (450)
T 2jdq_A 11 NNMEMAPGGVI----TSDMIEMIF-SKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFES 85 (450)
T ss_dssp ---------------CHHHHHHHH-SSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHH
T ss_pred hHHhhcccccc----HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHH
Confidence 34578654422 234455554 35666666677777665421 111122333 5788888888887 56899999
Q ss_pred HHHHHHHHhc
Q 004881 361 FLILQDVASG 370 (725)
Q Consensus 361 Fl~Lr~l~~~ 370 (725)
.-+|.+++..
T Consensus 86 ~~~L~~l~~~ 95 (450)
T 2jdq_A 86 AWVLTNIASG 95 (450)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhcC
Confidence 9999999874
No 39
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14
Probab=24.76 E-value=4.5e+02 Score=25.18 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=39.1
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhhcccCCCCCCCCCCccccCHHHHHHHHHHHHHHH
Q 004881 195 LTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLDCETFCKILMFVLREA 262 (725)
Q Consensus 195 lT~~~v~~W~~~l~~~~sl~alr~lv~AFRaA~~~~~e~~~~~~~~~ky~I~ds~VFn~vv~~~L~~l 262 (725)
--.+.+.+....+.++++...+.-=+..+|.|.+ +++..|...|+...++.+
T Consensus 22 F~~Ev~~sL~r~~~e~~~~d~iilEin~lr~a~n----------------~s~~ev~~~v~~a~l~~~ 73 (189)
T 1paq_A 22 FEKEGIATVERAMENNHDLDTALLELNTLRMSMN----------------VTYHEVRIATITALLRRV 73 (189)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTT----------------CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC----------------CCHHHHHHHHHHHHHHHH
Confidence 4556888888889999999988888888888754 555677777777666554
No 40
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=22.65 E-value=4.4e+02 Score=26.94 Aligned_cols=71 Identities=4% Similarity=-0.054 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHhhccccCccchhhhHHHHHHHHHHhcCCc
Q 004881 339 RRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSD-CFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDL 417 (725)
Q Consensus 339 k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~~~-~le~~LK~~Y~ayv~~~k~t~~~tl~~InfMkNs~~EL~~lD~ 417 (725)
-.+|=.++.=-+.+.+.+|-.+--+|+.++..++.. +++.++ .+.+.-|+++=...=-.-.++++.||+.+
T Consensus 131 ~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~--------~g~ksKN~R~R~e~l~~l~~li~~~G~~~ 202 (266)
T 2of3_A 131 SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLL--------DALKSKNARQRSECLLVIEYYITNAGISP 202 (266)
T ss_dssp HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHH--------HGGGCSCHHHHHHHHHHHHHHHHHHCSGG
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHH--------HHHccCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 344445566668888999998888899988877765 344433 33344455554444444567788899974
No 41
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=22.02 E-value=1.4e+02 Score=24.63 Aligned_cols=37 Identities=8% Similarity=0.117 Sum_probs=30.8
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhhc
Q 004881 194 LLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYG 230 (725)
Q Consensus 194 ~lT~~~v~~W~~~l~~~~sl~alr~lv~AFRaA~~~~ 230 (725)
.||...|..|...+.+..+...+++++.++|++....
T Consensus 43 ~It~~~i~~~~~~l~~~~s~~t~~~~~~~lr~~~~~A 79 (111)
T 2kiw_A 43 TIKKHDYQRFVDDISAQYSKNYVDSIVASTNMIFKYA 79 (111)
T ss_dssp GCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHH
Confidence 3899999999999877778899998888888776654
No 42
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=21.49 E-value=3.1e+02 Score=25.03 Aligned_cols=66 Identities=20% Similarity=0.196 Sum_probs=38.3
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchHHHH-----HHHHHHHHhhcCCCchhHHHHHHHHHHHHhcc
Q 004881 302 RSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIR-----RLIKIAVHLWATGEETVSFHSFLILQDVASGF 371 (725)
Q Consensus 302 ~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~kl~k-----~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~ 371 (725)
..++.+|.. .++++...++..|..+.. ..+.... ..+..++.+..+++..+|..|..+|.+|+...
T Consensus 57 ~~L~~lL~~-~~~~v~~~a~~~L~~l~~---~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 127 (210)
T 4db6_A 57 PALVQLLSS-PNEQILQEALWALSNIAS---GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 127 (210)
T ss_dssp HHHHHHTTC-SCHHHHHHHHHHHHHHTT---SCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHhc---CCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC
Confidence 344555543 245555555555544321 1122111 24567777778887788988989999998743
No 43
>2y6w_A BCL-2-like protein 2; apoptosis; HET: PGE; 2.00A {Homo sapiens} PDB: 1mk3_A 1zy3_A
Probab=21.07 E-value=2.3e+02 Score=27.14 Aligned_cols=85 Identities=11% Similarity=-0.012 Sum_probs=56.5
Q ss_pred chhhhHHHHHHHHHHhcCCccchhHHHHH-HHHHHHHHHHHhhh---hhhhhhhhhcccchhHhHHHHHHHHHcccCCCC
Q 004881 398 LFKHLQFLRNSFVELCSQDLLRSSNKAKV-SINNLSRILQLGLQ---TKKKEAVKKICSWQYANCIDLWVTYISHCIHDY 473 (725)
Q Consensus 398 tl~~InfMkNs~~EL~~lD~~~sYq~AF~-yIRQLAIhLRnai~---~k~Kea~k~VYNWQfvhsL~~Ws~VLs~~~~~s 473 (725)
.-+....|+...-||- .-|+.+|. .++||.+..+++.. .=-.+-|..=.||.=|=+|-.++..|+.+|...
T Consensus 52 ~~~v~~~Lr~~gdele-----~~~~~~f~~~~~~l~i~~~~~~~~f~~Va~elF~dGinWGRIVaLfaF~g~La~~~~~~ 126 (177)
T 2y6w_A 52 ADPLHQAMRAAGDEFE-----TRFRRTFSDLAAQLHVTPGSAQQRFTQVSDELFQGGPNWGRLVAFFVFGAALCAESVNK 126 (177)
T ss_dssp SSHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHH-----HHhHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 3344566776666663 33888887 78888876555532 112344554469999999999999999877555
Q ss_pred CccchHHHHHHHHh
Q 004881 474 DLQPLLYIIIQIIN 487 (725)
Q Consensus 474 ~L~pLiYPLVQVi~ 487 (725)
.+.+++..|+.-+.
T Consensus 127 ~~~~~v~~I~~~~~ 140 (177)
T 2y6w_A 127 EMEPLVGQVQEWMV 140 (177)
T ss_dssp TCTHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHH
Confidence 56666666665444
No 44
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=20.95 E-value=1.5e+02 Score=24.93 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=28.0
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhh
Q 004881 194 LLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHY 229 (725)
Q Consensus 194 ~lT~~~v~~W~~~l~~~~sl~alr~lv~AFRaA~~~ 229 (725)
.||...|..|...+.+..+...+++++..++++..+
T Consensus 50 ~It~~~i~~~~~~l~~~~s~~t~~~~~~~l~~i~~~ 85 (112)
T 3lys_A 50 EITASSYQRALNKFAETHAKASTKGFHTRVRASIQC 85 (112)
T ss_dssp TCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 489999999999998777888877777666655544
No 45
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=20.48 E-value=4.4e+02 Score=27.02 Aligned_cols=71 Identities=10% Similarity=0.002 Sum_probs=44.5
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhc--chHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhcc
Q 004881 301 LRSTLFMLNQATDSEILAFSLNRLRTSIVFFAA--FPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGF 371 (725)
Q Consensus 301 l~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~--f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~ 371 (725)
+..++.+|..-++.++...++..|..+...-.+ -..+...++..++.+...++..++..|.-+|++++...
T Consensus 151 i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~ 223 (450)
T 2jdq_A 151 LPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP 223 (450)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCC
Confidence 445666666445567766666666654421100 01223556777777777777789999999999998753
No 46
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A {Saccharomyces cerevisiae}
Probab=20.36 E-value=21 Score=42.30 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=0.0
Q ss_pred hhhhhhhHhhhch---HHHHHHH
Q 004881 5 GKKARKFAKKNLQ---SVLKRKR 24 (725)
Q Consensus 5 ~K~tkKF~~k~L~---~~~~~rk 24 (725)
+|..|.|..++|. +++.+|=
T Consensus 610 KKsske~ii~QL~sl~~tl~e~I 632 (956)
T 4aco_A 610 KKSSRGYILHQLNLFKITLDERI 632 (956)
T ss_dssp -----------------------
T ss_pred cccHHHHHHHHHHHHHHHHHHHh
Confidence 4447888766544 5555543
No 47
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=20.10 E-value=1.1e+02 Score=25.38 Aligned_cols=38 Identities=13% Similarity=0.073 Sum_probs=31.4
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhhcc
Q 004881 194 LLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGA 231 (725)
Q Consensus 194 ~lT~~~v~~W~~~l~~~~sl~alr~lv~AFRaA~~~~~ 231 (725)
.||...|..|...+.+..+...+++++.++|++.....
T Consensus 50 ~it~~~i~~~~~~l~~~~s~~t~~~~~~~l~~~~~~A~ 87 (116)
T 2kj5_A 50 DVKPRHIDDVLKAVMKRGAPSIANDTLRWLKRMFNYAI 87 (116)
T ss_dssp SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHH
Confidence 48999999999988776788999988888887776543
No 48
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=20.06 E-value=5.1e+02 Score=25.44 Aligned_cols=123 Identities=8% Similarity=0.023 Sum_probs=74.2
Q ss_pred CcHHHHHHHHHHhhhhhhhhh--cch-HHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCc----chHHHHHHHHH
Q 004881 312 TDSEILAFSLNRLRTSIVFFA--AFP-LLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSS----DCFDLCLIKMY 384 (725)
Q Consensus 312 td~~~l~~~L~~l~~llpy~~--~f~-kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~~----~~le~~LK~~Y 384 (725)
++..+....+..|..+.--+. .|. +....++-.++.........|+-+|..+|..++...+. ++++.+|..+.
T Consensus 73 ~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~ 152 (249)
T 2qk1_A 73 ANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDIL 152 (249)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHH
Confidence 344455566666666665554 676 78888999999999888888988999999999886632 34777777776
Q ss_pred HHHHhhccccCccchhhhHHHHHHHHHHhcCCccchhHHHHHHH-HHHHHHHHHhhhhh
Q 004881 385 KAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSI-NNLSRILQLGLQTK 442 (725)
Q Consensus 385 ~ayv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yI-RQLAIhLRnai~~k 442 (725)
.+ +++.+. .-....++|+..|+-. ++-.+ ..+ . -|+ .++.-+|-+.|...
T Consensus 153 ~~-l~~k~~--~vk~~al~~l~~~~~~-~~~~~-~~l--~-~~l~~~iip~l~~~l~D~ 203 (249)
T 2qk1_A 153 EH-MKHKTP--QIRMECTQLFNASMKE-EKDGY-STL--Q-RYLKDEVVPIVIQIVNDT 203 (249)
T ss_dssp HH-TTCSSH--HHHHHHHHHHHHHHHH-CCSCS-HHH--H-HHHTTTHHHHHHHHHTCS
T ss_pred HH-HcCCCh--HHHHHHHHHHHHHHHH-cCCcc-hhH--H-HHHHHHHHHHHHHHhcCC
Confidence 44 333210 1122334455444432 11100 111 1 266 67777777777643
Done!