Query 004881
Match_columns 725
No_of_seqs 210 out of 291
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 08:42:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004881.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004881hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qgra_ a.118.1.1 (A:) Importi 70.3 66 0.0048 33.3 20.2 235 294-532 167-462 (876)
2 d2bpta1 a.118.1.1 (A:1-861) Im 69.9 65 0.0047 33.1 18.4 56 334-390 633-688 (861)
3 d1ho8a_ a.118.1.9 (A:) Regulat 66.3 13 0.00091 39.2 10.7 152 300-465 75-253 (477)
4 d1wa5c_ a.118.1.1 (C:) Exporti 66.3 60 0.0044 34.5 17.0 204 304-527 460-687 (959)
5 d1ibrb_ a.118.1.1 (B:) Importi 64.3 59 0.0043 30.5 17.7 213 297-515 169-437 (458)
6 d1u6gc_ a.118.1.2 (C:) Cullin- 53.7 1.2E+02 0.0086 33.1 16.9 180 333-530 38-219 (1207)
7 d2vgla_ a.118.1.10 (A:) Adapti 52.6 1.3E+02 0.0095 30.8 18.7 103 265-373 55-173 (584)
8 d1qgra_ a.118.1.1 (A:) Importi 47.0 86 0.0062 32.3 13.6 85 300-384 650-740 (876)
9 d1u6gc_ a.118.1.2 (C:) Cullin- 46.0 92 0.0067 34.0 14.3 98 293-390 124-222 (1207)
10 d1uw4b_ a.118.1.14 (B:) Regula 39.3 48 0.0035 30.9 9.0 126 295-432 2-130 (248)
11 d1i1ip_ d.92.1.5 (P:) Neurolys 24.0 31 0.0022 37.3 5.0 109 380-493 225-361 (665)
No 1
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=70.30 E-value=66 Score=33.26 Aligned_cols=235 Identities=11% Similarity=0.066 Sum_probs=119.2
Q ss_pred hHHHHHHHHHHHHHhhcC-CcHHHHHHHHHHhhhhhhh---hhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 004881 294 RPLIKSYLRSTLFMLNQA-TDSEILAFSLNRLRTSIVF---FAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVAS 369 (725)
Q Consensus 294 ~~liKsyl~sll~LL~~l-td~~~l~~~L~~l~~llpy---~~~f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~ 369 (725)
...+...+..+++.|..- ++.++....+..+...+.+ ..........+++.+..+.......+|..|+-++..++.
T Consensus 167 ~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~ 246 (876)
T d1qgra_ 167 QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMS 246 (876)
T ss_dssp GGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 333444455556665433 3345555555555544333 233344445677777777777777899999999999988
Q ss_pred ccCcchHHH---HHHHHHHHHHhhcc---------------------------------c---cCcc-chhhhHHHHHHH
Q 004881 370 GFSSDCFDL---CLIKMYKAFIGHCK---------------------------------F---AEPA-LFKHLQFLRNSF 409 (725)
Q Consensus 370 ~~~~~~le~---~LK~~Y~ayv~~~k---------------------------------~---t~~~-tl~~InfMkNs~ 409 (725)
.++..+... .+-.++........ . .+.. .....+.....+
T Consensus 247 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 326 (876)
T d1qgra_ 247 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 326 (876)
T ss_dssp HSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 765432221 11111111111100 0 0000 001111111222
Q ss_pred HHHhc-------CCccchhHHHHHHHHHHHHHHHHhhhhhhh---hhhhhcccchhHhHHHHHHHHHcccCCCCCccchH
Q 004881 410 VELCS-------QDLLRSSNKAKVSINNLSRILQLGLQTKKK---EAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLL 479 (725)
Q Consensus 410 ~EL~~-------lD~~~sYq~AF~yIRQLAIhLRnai~~k~K---ea~k~VYNWQfvhsL~~Ws~VLs~~~~~s~L~pLi 479 (725)
.++.. -+....+..|...++.++.++.+.+...-- ...-.-.+|+..++.-+--..++..+....+.+.+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~ 406 (876)
T d1qgra_ 327 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 406 (876)
T ss_dssp HHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH
T ss_pred HHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 22211 112234556666777777766654431111 11122367888776544334444444445677777
Q ss_pred HHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHhcc-------CcceechhHHHHhhcc
Q 004881 480 YIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSS-------GIFIPVTSLMLDVLEY 532 (725)
Q Consensus 480 YPLVQVi~G~irLiPt~ryfPLRfh~ir~L~~Ls~~t-------~~fIPl~p~LleiL~s 532 (725)
..++..++..+. -| ....|-.++.+|.+++... ..+.|+.+.++..++.
T Consensus 407 ~~~~~~l~~~l~-d~---~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 462 (876)
T d1qgra_ 407 IQAMPTLIELMK-DP---SVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA 462 (876)
T ss_dssp HHHHHHHHHHHT-CS---SHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhc-CC---ccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhcC
Confidence 777777766553 22 2346777777777777543 2345566777766653
No 2
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=69.91 E-value=65 Score=33.06 Aligned_cols=56 Identities=11% Similarity=0.138 Sum_probs=36.8
Q ss_pred chHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhh
Q 004881 334 FPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGH 390 (725)
Q Consensus 334 f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~ayv~~ 390 (725)
|.+....++..++......+..+|..|+.++-.++...+..+ ...+..+...+++.
T Consensus 633 ~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~-~~~~~~i~~~L~~~ 688 (861)
T d2bpta1 633 FEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDF-RRYSDAMMNVLAQM 688 (861)
T ss_dssp GHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGG-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHh-HhhHHHHHHHHHHH
Confidence 344556677777777778888899999999999888765433 22333344444443
No 3
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=66.34 E-value=13 Score=39.15 Aligned_cols=152 Identities=15% Similarity=0.152 Sum_probs=85.4
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhhhhhh----------hhhcchHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHHH
Q 004881 300 YLRSTLFMLNQATDSEILAFSLNRLRTSIV----------FFAAFPLLIRRLIKIAVHLWATGEE-TVSFHSFLILQDVA 368 (725)
Q Consensus 300 yl~sll~LL~~ltd~~~l~~~L~~l~~llp----------y~~~f~kl~k~llK~lv~lWst~~e-~vrv~AFl~Lr~l~ 368 (725)
|..+++++|+.++.++++..+|.-+..++. ++...+.....+ .+++- .+++ -+-.+||-++..++
T Consensus 75 ~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~---f~~~l-~~~d~~~~~~s~~i~~ll~ 150 (477)
T d1ho8a_ 75 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQL---FDVSL-KGDFQTVLISGFNVVSLLV 150 (477)
T ss_dssp THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHH---HHHCS-CSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHH---HHHhc-cCchhHHHHHHHHHHHHHH
Confidence 466788899999999999999987776542 111111111111 11111 1222 35567787777777
Q ss_pred hccCcch-HHHHHHHHHHHHHhhccccCccchhhhHHHHHHHHHHhcCCccchhHHHHH-----HHHHHHHHHHHhhhhh
Q 004881 369 SGFSSDC-FDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKV-----SINNLSRILQLGLQTK 442 (725)
Q Consensus 369 ~~~~~~~-le~~LK~~Y~ayv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~-----yIRQLAIhLRnai~~k 442 (725)
...+... ....+... ..|++. .++....+....--+|+.+|... -.|+..|. +|-.|--.||+++.++
T Consensus 151 ~~~~~~~~~~e~l~~~-~~~l~~--l~~~~~~~~~~i~v~~lq~llr~---~~~R~~fw~~~~~~~~~l~~il~~a~~~~ 224 (477)
T d1ho8a_ 151 QNGLHNVKLVEKLLKN-NNLINI--LQNIEQMDTCYVCIRLLQELAVI---PEYRDVIWLHEKKFMPTLFKILQRATDSQ 224 (477)
T ss_dssp STTTCCHHHHHHHHHC-HHHHHH--HHCTTCHHHHHHHHHHHHHHHTS---HHHHHHHHTTHHHHHHHHHHHHHHHHC--
T ss_pred hccccccchHHHHHHh-hHHHHH--hhcccccchHHHHHHHHHHHhcC---ccHHHHHHHcccchHHHHHHHHHHHhccc
Confidence 6543322 12222222 233333 23444455666667888888877 45776664 4666888899887643
Q ss_pred h----------hhhhhhcccchhHhHHHHHHHH
Q 004881 443 K----------KEAVKKICSWQYANCIDLWVTY 465 (725)
Q Consensus 443 ~----------Kea~k~VYNWQfvhsL~~Ws~V 465 (725)
. +-.+|. ||--+|=+|.--
T Consensus 225 ~~~~~~~~~~~~~~~Ql----~Y~~ll~lWlLS 253 (477)
T d1ho8a_ 225 LATRIVATNSNHLGIQL----QYHSLLLIWLLT 253 (477)
T ss_dssp -----------CCHHHH----HHHHHHHHHHHT
T ss_pred ccchhhcccCCCccHHH----HHHHHHHHHHHH
Confidence 1 234554 455666678543
No 4
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=66.32 E-value=60 Score=34.49 Aligned_cols=204 Identities=10% Similarity=0.067 Sum_probs=99.8
Q ss_pred HHHHhhcCCcH--HHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccC---------
Q 004881 304 TLFMLNQATDS--EILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFS--------- 372 (725)
Q Consensus 304 ll~LL~~ltd~--~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~--------- 372 (725)
+...|....++ -+...++..+....+++ ++.....++..++++-.+.+..||+.|-.+|++++....
T Consensus 460 v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~--~~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~ 537 (959)
T d1wa5c_ 460 IAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIF 537 (959)
T ss_dssp THHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSS
T ss_pred HHHHHccCCCchHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhc
Confidence 44444444332 23333333344433332 356778899999998887777899999899999886432
Q ss_pred -----cchHHHHHHHHHHHHHhhccccCccchhhhHHHHHH---HHHHhcCCccchhHHHHHHHHHHHHHHHHhhhhhhh
Q 004881 373 -----SDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNS---FVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKK 444 (725)
Q Consensus 373 -----~~~le~~LK~~Y~ayv~~~k~t~~~tl~~InfMkNs---~~EL~~lD~~~sYq~AF~yIRQLAIhLRnai~~k~K 444 (725)
.++++.++......+......+ ..+....+.-++ +++.++-... . |.-++.-+|-+.+..-.+
T Consensus 538 ~~~~l~p~l~~ll~~L~~~l~~~~~~~--~~~~~~~~ll~~l~~ii~~~~~~~~---~----~~~~i~~~l~~~~~~~~~ 608 (959)
T d1wa5c_ 538 HKEDISNSTEILLKNLIALILKHGSSP--EKLAENEFLMRSIFRVLQTSEDSIQ---P----LFPQLLAQFIEIVTIMAK 608 (959)
T ss_dssp CGGGTTTTHHHHHHHHHHHHHTTCCCH--HHHTSCHHHHHHHHHHHHHHTTTTG---G----GHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHhhHHHHHHHHHHHHHhhcchh--hhHHHHHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHhc
Confidence 3567777766666655543321 111111122222 2333332211 1 222333333333322111
Q ss_pred hhhhhcccchhHh-HHHHHHHHHcccCCCCC---ccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHhc-cCcc
Q 004881 445 EAVKKICSWQYAN-CIDLWVTYISHCIHDYD---LQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSS-SGIF 519 (725)
Q Consensus 445 ea~k~VYNWQfvh-sL~~Ws~VLs~~~~~s~---L~pLiYPLVQVi~G~irLiPt~ryfPLRfh~ir~L~~Ls~~-t~~f 519 (725)
+. .|=.+++ +++..+.++.... .+. +-+-++|+++-++. -....|+|--|.++..+++.+.. +..|
T Consensus 609 ~~----~~~~~~~~~~e~l~~l~~~~~-~~~~~~l~~~l~p~i~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 679 (959)
T d1wa5c_ 609 NP----SNPRFTHYTFESIGAILNYTQ-RQNLPLLVDSMMPTFLTVFS----EDIQEFIPYVFQIIAFVVEQSATIPESI 679 (959)
T ss_dssp SC----CCHHHHHHHHHHHHHHHHTSC-GGGHHHHHHHHHHHHHHHHH----TTCTTTHHHHHHHHHHHHHHCSSCCTTT
T ss_pred Cc----cchHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHHh----ccchhHHHHHHHHHHHHHHhCCCccHHH
Confidence 11 1112222 2345555554322 222 33334555544443 23345777777777666665532 3556
Q ss_pred eechhHHH
Q 004881 520 IPVTSLML 527 (725)
Q Consensus 520 IPl~p~Ll 527 (725)
.|+++.++
T Consensus 680 ~~l~~~l~ 687 (959)
T d1wa5c_ 680 KPLAQPLL 687 (959)
T ss_dssp GGGHHHHT
T ss_pred HHHHHHHh
Confidence 77666654
No 5
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=64.33 E-value=59 Score=30.51 Aligned_cols=213 Identities=13% Similarity=0.110 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHhhcC-CcHHHHHHHHHHhhhhhhhhh---cchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccC
Q 004881 297 IKSYLRSTLFMLNQA-TDSEILAFSLNRLRTSIVFFA---AFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFS 372 (725)
Q Consensus 297 iKsyl~sll~LL~~l-td~~~l~~~L~~l~~llpy~~---~f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~ 372 (725)
+...+..+++.+..- ++.++....++.+..++.++. ........++..+..+..+....++..+|-+|..++..++
T Consensus 169 ~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~ 248 (458)
T d1ibrb_ 169 SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY 248 (458)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence 333445555555432 345566666666655444332 3344555667777777777777899999999999887554
Q ss_pred cch-------HHHHHHHH-H----------HHHHh------------hcc----c-----cCc-cchhhhHHHHHHHHHH
Q 004881 373 SDC-------FDLCLIKM-Y----------KAFIG------------HCK----F-----AEP-ALFKHLQFLRNSFVEL 412 (725)
Q Consensus 373 ~~~-------le~~LK~~-Y----------~ayv~------------~~k----~-----t~~-~tl~~InfMkNs~~EL 412 (725)
..+ +..++... . ..++. ... . ... ........+...+.+.
T Consensus 249 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 328 (458)
T d1ibrb_ 249 QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT 328 (458)
T ss_dssp GGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhh
Confidence 211 11111110 0 00000 000 0 000 0112233334444444
Q ss_pred hcC-C------ccchhHHHHHHHHHHHHHHHHhhhhh----hhhhhhhcccchhHhH-HHHHHHHHcccCCCCCccchHH
Q 004881 413 CSQ-D------LLRSSNKAKVSINNLSRILQLGLQTK----KKEAVKKICSWQYANC-IDLWVTYISHCIHDYDLQPLLY 480 (725)
Q Consensus 413 ~~l-D------~~~sYq~AF~yIRQLAIhLRnai~~k----~Kea~k~VYNWQfvhs-L~~Ws~VLs~~~~~s~L~pLiY 480 (725)
..- + ....+..|...++.++..+.+.+... -.+.+ .=-+|+..++ +..- ..++..|....++|.+.
T Consensus 329 ~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l-~s~~~~~r~aal~~l-~~i~~~~~~~~~~~~l~ 406 (458)
T d1ibrb_ 329 LTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHI-KNPDWRYRDAAVMAF-GCILEGPEPSQLKPLVI 406 (458)
T ss_dssp TTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHT-TCSSHHHHHHHHHHH-HHTSSSSCTTTTCTTTT
T ss_pred hhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHh-cCCCHHHHHHHHHHH-HHHHHhcCHhHHHHHHH
Confidence 331 1 11234455555555554443222110 00111 1247887665 2222 23344455567888888
Q ss_pred HHHHHHhhhhcccCCCcccchHHHHHHHHHHHHhc
Q 004881 481 IIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSS 515 (725)
Q Consensus 481 PLVQVi~G~irLiPt~ryfPLRfh~ir~L~~Ls~~ 515 (725)
.++++++..++ -|. -++|...+.+|-+++..
T Consensus 407 ~i~~~l~~~l~-d~~---~~VR~~a~~~l~~i~~~ 437 (458)
T d1ibrb_ 407 QAMPTLIELMK-DPS---VVVRDTAAWTVGRICEL 437 (458)
T ss_dssp THHHHHHHGGG-CSC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCC---HHHHHHHHHHHHHHHHH
Confidence 88888776554 233 35888888888888754
No 6
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.66 E-value=1.2e+02 Score=33.09 Aligned_cols=180 Identities=16% Similarity=0.133 Sum_probs=96.8
Q ss_pred cchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhhccccCccchhhhHHHHHHHHHH
Q 004881 333 AFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVEL 412 (725)
Q Consensus 333 ~f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~ayv~~~k~t~~~tl~~InfMkNs~~EL 412 (725)
.-....++++..++.+-.+....||-+|--||-.++...+...++.++..+......+... .+..+.+ -++.-+.+|
T Consensus 38 ~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~l~~~~~~--~r~~~~~-~L~~i~~~l 114 (1207)
T d1u6gc_ 38 LDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQ--LRDISSI-GLKTVIGEL 114 (1207)
T ss_dssp CCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSH--HHHHHHH-HHHHHHHHC
T ss_pred cChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhcCCchh--hhHHHHH-HHHHHHHhc
Confidence 3456678888888888888888899999999999999888777777776665543322111 1122222 223333344
Q ss_pred hcCCccchhHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccchhHhHHHHHHHHHcccCCCCCccchHHHHHHHHhhhhcc
Q 004881 413 CSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATL 492 (725)
Q Consensus 413 ~~lD~~~sYq~AF~yIRQLAIhLRnai~~k~Kea~k~VYNWQfvhsL~~Ws~VLs~~~~~s~L~pLiYPLVQVi~G~irL 492 (725)
.......+ ..-..++++.-.|.+++.......++ ..++++-+.+++... ..+.|....+++.++-.+.
T Consensus 115 ~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~v~-------~~al~~l~~l~~~~g--~~l~~~~~~il~~l~~~l~- 182 (1207)
T d1u6gc_ 115 PPASSGSA--LAANVCKKITGRLTSAIAKQEDVSVQ-------LEALDIMADMLSRQG--GLLVNFHPSILTCLLPQLT- 182 (1207)
T ss_dssp C-----CC--THHHHHHHHHHHHHHHHSCCSCHHHH-------HHHHHHHHHHHHHTC--SSCTTTHHHHHHHHGGGGG-
T ss_pred ccccccch--hHHHHHHHHHHHHHHhhcCCCCHHHH-------HHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHhC-
Confidence 32222221 22345666666677666654322221 346777777777543 3566666666665543322
Q ss_pred cCCCcccchHHHHHHHHHHHHhccC--cceechhHHHHhh
Q 004881 493 FPGPRYLPLRCKCIEWLNHLSSSSG--IFIPVTSLMLDVL 530 (725)
Q Consensus 493 iPt~ryfPLRfh~ir~L~~Ls~~t~--~fIPl~p~LleiL 530 (725)
+++. -.|-..+..|-.|+...+ .|-++.+.++..|
T Consensus 183 --~~~~-~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l 219 (1207)
T d1u6gc_ 183 --SPRL-AVRKRTIIALGHLVMSCGNIVFVDLIEHLLSEL 219 (1207)
T ss_dssp --CSSH-HHHHHHHHHHHHHTTTC----CTTHHHHHHHHH
T ss_pred --CCCH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 1111 145455555555543322 2333444444444
No 7
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}
Probab=52.55 E-value=1.3e+02 Score=30.77 Aligned_cols=103 Identities=10% Similarity=0.166 Sum_probs=56.6
Q ss_pred HHHHHhCCcCCCCCccccccCCCCcchhhhHHHHHHHHHH-------HH-----HhhcC--CcHHHHHHHHHHhhhhhhh
Q 004881 265 VFREMLGISSNCKRDTILGLKNNSKWKTVRPLIKSYLRST-------LF-----MLNQA--TDSEILAFSLNRLRTSIVF 330 (725)
Q Consensus 265 ~l~~~l~~k~~~~k~~~~~~~~~~kw~kl~~liKsyl~sl-------l~-----LL~~l--td~~~l~~~L~~l~~llpy 330 (725)
++-+++|+..+.+-..+.++..++++. .+.+.--|+..+ +- +.+.+ +++.+-.++|+.|..
T Consensus 55 ~y~~mlG~dv~~~~~~vi~l~ss~~~~-~Kr~gYL~l~~~~~~~~el~~L~iNtl~KDL~s~n~~ir~lALr~L~~---- 129 (584)
T d2vgla_ 55 LFIFLLGHDIDFGHMEAVNLLSSNRYT-EKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIAN---- 129 (584)
T ss_dssp HHHHHHSCCCCSCHHHHHHGGGCSCHH-HHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHH----
T ss_pred HHHHHhCCCCCchHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHc----
Confidence 344678887764444455555555442 333332222211 11 11122 334455555555544
Q ss_pred hhcchHHHHHHHHHHHHhhcCCC--chhHHHHHHHHHHHHhccCc
Q 004881 331 FAAFPLLIRRLIKIAVHLWATGE--ETVSFHSFLILQDVASGFSS 373 (725)
Q Consensus 331 ~~~f~kl~k~llK~lv~lWst~~--e~vrv~AFl~Lr~l~~~~~~ 373 (725)
+..+.+...++..+..+-..+. .-||-.|.+++.++....+.
T Consensus 130 -i~~~~i~~~l~~~V~k~l~~~d~~p~VRk~A~l~l~ki~~~~pd 173 (584)
T d2vgla_ 130 -VGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD 173 (584)
T ss_dssp -HCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG
T ss_pred -CCCHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhChh
Confidence 2346666666666666555433 46999999999999887654
No 8
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.05 E-value=86 Score=32.32 Aligned_cols=85 Identities=6% Similarity=0.084 Sum_probs=51.7
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhhhhhh-hhhcchHHHHHHHHHHHHhhcCCC--chhHHHHHHHHHHHHhccCc---
Q 004881 300 YLRSTLFMLNQATDSEILAFSLNRLRTSIV-FFAAFPLLIRRLIKIAVHLWATGE--ETVSFHSFLILQDVASGFSS--- 373 (725)
Q Consensus 300 yl~sll~LL~~ltd~~~l~~~L~~l~~llp-y~~~f~kl~k~llK~lv~lWst~~--e~vrv~AFl~Lr~l~~~~~~--- 373 (725)
.+..++..|....++++...++.-+..+.. .-..+...+-.++..++..|+... ..++..++-++..++...+.
T Consensus 650 ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~~~~ 729 (876)
T d1qgra_ 650 FKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFK 729 (876)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhHhhH
Confidence 344445555555666555444433332211 112344566788899999998754 46899999999998876654
Q ss_pred chHHHHHHHHH
Q 004881 374 DCFDLCLIKMY 384 (725)
Q Consensus 374 ~~le~~LK~~Y 384 (725)
++++.++..+-
T Consensus 730 ~yl~~~l~~l~ 740 (876)
T d1qgra_ 730 KYLEVVLNTLQ 740 (876)
T ss_dssp GGHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45566665443
No 9
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.00 E-value=92 Score=34.03 Aligned_cols=98 Identities=6% Similarity=0.019 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhc-chHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhcc
Q 004881 293 VRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAA-FPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGF 371 (725)
Q Consensus 293 l~~liKsyl~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~-f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~ 371 (725)
...+++.++.-+...+..-.+..+-.-++.-+..++..+.. +......++..++....++...+|..|..+|..++...
T Consensus 124 ~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~ 203 (1207)
T d1u6gc_ 124 AANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC 203 (1207)
T ss_dssp HHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHC
Confidence 35566667777777776666666655555545443322211 22334677888888888888889999999999999888
Q ss_pred CcchHHHHHHHHHHHHHhh
Q 004881 372 SSDCFDLCLIKMYKAFIGH 390 (725)
Q Consensus 372 ~~~~le~~LK~~Y~ayv~~ 390 (725)
+...++.++..+-..+..+
T Consensus 204 ~~~~~~~~~~~ll~~l~~~ 222 (1207)
T d1u6gc_ 204 GNIVFVDLIEHLLSELSKN 222 (1207)
T ss_dssp ----CTTHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHccC
Confidence 7777666666655555443
No 10
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.34 E-value=48 Score=30.92 Aligned_cols=126 Identities=10% Similarity=0.095 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhcc---
Q 004881 295 PLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGF--- 371 (725)
Q Consensus 295 ~liKsyl~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~--- 371 (725)
|.+..|+.-+ +++.+|...+ ..++..+..+ +| .-+.....+++.+++.|.+..+.+...|=++ -.|+...
T Consensus 2 ~p~~~flr~l--i~n~Ls~~n~-~~i~~~i~kl-~~--~n~e~~~~li~~i~~~~~~~~~~i~~yA~l~-a~L~~~~~~f 74 (248)
T d1uw4b_ 2 PPLQEYVRKL--LYKDLSKVTT-EKVLRQMRKL-PW--QDQEVKDYVICCMINIWNVKYNSIHCVANLL-AGLVLYQEDV 74 (248)
T ss_dssp CHHHHHHHHH--HHTTCSTTSH-HHHHHHHHTS-CT--TSHHHHHHHHHHHHCGGGSCGGGHHHHHHHH-HHHTTTCHHH
T ss_pred CcHHHHHHHH--HHhhCCHhHH-HHHHHHHHHC-CC--CCHHHHHHHHHHHhhhhcCchhHHHHHHHHH-HHHHHHhHHH
Confidence 5577788887 4688876543 3455566554 33 4688899999999999987766555443322 1122222
Q ss_pred CcchHHHHHHHHHHHHHhhccccCccchhhhHHHHHHHHHHhcCCccchhHHHHHHHHHHH
Q 004881 372 SSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLS 432 (725)
Q Consensus 372 ~~~~le~~LK~~Y~ayv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yIRQLA 432 (725)
...+++.+.-.+-..+-.+-....-+.+..| ..+.|||.... ++..+.|..|++|-
T Consensus 75 ~~~~id~l~e~f~~~~e~~~~~~~~r~~~~v----~figeLy~~~~-v~~~~i~~~l~~Ll 130 (248)
T d1uw4b_ 75 GIHVVDGVLEDIRLGMEVNQPKFNQRRISSA----KFLGELYNYRM-VESAVIFRTLYSFT 130 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHCCGGGHHHHHHHH----HHHHHHHHTTS-SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH----HHHHHHHHHcc-CcHHHHHHHHHHHH
Confidence 2233444444433333332221111222222 34567776533 45566666666663
No 11
>d1i1ip_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet oligopeptidase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=24.03 E-value=31 Score=37.31 Aligned_cols=109 Identities=23% Similarity=0.352 Sum_probs=71.7
Q ss_pred HHHHHHHHHhhccccCccchhhhHHHHHHHHHHhcCCccchh----------HHHHHHHHHHHHHHHHhhhh--------
Q 004881 380 LIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSS----------NKAKVSINNLSRILQLGLQT-------- 441 (725)
Q Consensus 380 LK~~Y~ayv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sY----------q~AF~yIRQLAIhLRnai~~-------- 441 (725)
=+.+|.+|...|..-|...+..|--.++..+.|+|-..-+.| ..+..++..|+..+|-....
T Consensus 225 R~~~~~a~~~r~~~~N~~~l~~il~lR~e~A~LLGf~s~A~~~L~~kMA~spe~V~~FL~~L~~~~~p~a~~E~~~L~~~ 304 (665)
T d1i1ip_ 225 RRKMEMAFHTRCKQENTAILQQLLPLRAQVAKLLGYNTHADFVLELNTAKSTSRVAAFLDDLSQKLKPLGEAEREFILSL 304 (665)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHTTSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccchhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhhcCcHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 457999999878776777788888899999999998755544 45889999999988866442
Q ss_pred hhhhh----h---hhcccchhHhHHHHHHHHHccc---CCCCCccchHHHHHHHHhhhhccc
Q 004881 442 KKKEA----V---KKICSWQYANCIDLWVTYISHC---IHDYDLQPLLYIIIQIINGMATLF 493 (725)
Q Consensus 442 k~Kea----~---k~VYNWQfvhsL~~Ws~VLs~~---~~~s~L~pLiYPLVQVi~G~irLi 493 (725)
++++. + ..|.-|-. .+|++-+... ..++.|+|- +||-.|+-|+..+.
T Consensus 305 ~~~~~~~~~~~~~~~l~pWD~----~Yy~~k~r~~~~~~d~~~l~~Y-Fpl~~vl~gl~~l~ 361 (665)
T d1i1ip_ 305 KKKECEERGFEYDGKINAWDL----HYYMTQTEELKYSVDQESLKEY-FPIEVVTEGLLSIY 361 (665)
T ss_dssp HHHHHHTTTCCCCSSCCHHHH----HHHHHHHHHHHSCCCHHHHGGG-CBHHHHHHHHHHHH
T ss_pred HHHhhhhcCCCcccccCcccH----HHHHHHHHhhhccccccccccc-ccHHHHHHHHHHHH
Confidence 11111 1 13666763 4566666532 133445554 36666666655553
Done!