BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004885
(725 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 4/186 (2%)
Query: 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 591
++GR +E K +F L T V S FSP+G+ LA+ DK +W +
Sbjct: 4 QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 62
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
T+ H I+DV +S + L ++S D+T+++WD + L+T GHS V +F+P
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP- 120
Query: 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILD 710
+ +L+ S + +R W + G C S + + F I++++ + I D
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 711 VETQVC 716
+ C
Sbjct: 181 TASGQC 186
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 85/179 (47%), Gaps = 7/179 (3%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
+ + ++ V C+F+P L+ +G D+ +W ++ TL H+ ++ V F+
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS-LDFHPSKEDLLCSCDNNSEIR 666
S + +SS D R+WDT + L+T +S + F P+ + +L + +N+ ++
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LK 220
Query: 667 YWSINNGSCAGVF---KCQSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQ 721
W + G C + K + F G+ I++ + +N + I +++T+ KLQ
Sbjct: 221 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Query: 563 FSPDGKLLATGGHDKKAVLW------CTESFTVKSTLEEHTQWITDVRFSPSLSR-LATS 615
FSP+GK + D LW C +++T ++ ++ FS + + + +
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVTGGKWIVSG 258
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
S D V +W+ + + ++ GH+ V+S HP+ E+++ S
Sbjct: 259 SEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPT-ENIIAS 299
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 4/186 (2%)
Query: 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 591
++GR +E K +F L T V S FSP+G+ LA+ DK +W +
Sbjct: 4 QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 62
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
T+ H I+DV +S + L ++S D+T+++WD + L+T GHS V +F+P
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP- 120
Query: 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILD 710
+ +L+ S + +R W + G C S + + F I++++ + I D
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 711 VETQVC 716
+ C
Sbjct: 181 TASGQC 186
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 85/179 (47%), Gaps = 7/179 (3%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
+ + ++ V C+F+P L+ +G D+ +W ++ TL H+ ++ V F+
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS-LDFHPSKEDLLCSCDNNSEIR 666
S + +SS D R+WDT + L+T +S + F P+ + +L + +N+ ++
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LK 220
Query: 667 YWSINNGSCAGVF---KCQSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQ 721
W + G C + K + F G+ I++ + +N + I +++T+ KLQ
Sbjct: 221 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Query: 563 FSPDGKLLATGGHDKKAVLW------CTESFTVKSTLEEHTQWITDVRFSPSLSR-LATS 615
FSP+GK + D LW C +++T ++ ++ FS + + + +
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVTGGKWIVSG 258
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
S D V +W+ + + ++ GH+ V+S HP+ E+++ S
Sbjct: 259 SEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPT-ENIIAS 299
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 86/186 (46%), Gaps = 4/186 (2%)
Query: 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 591
++GR +E K +F L T V S FSP+G+ LA DK +W +
Sbjct: 4 QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEK 62
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
T+ H I+DV +S + L ++S D+T+++WD + L+T GHS V +F+P
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP- 120
Query: 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILD 710
+ +L+ S + +R W + G C S + + F I++++ + I D
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 711 VETQVC 716
+ C
Sbjct: 181 TASGQC 186
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 85/179 (47%), Gaps = 7/179 (3%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
+ + ++ V C+F+P L+ +G D+ +W ++ TL H+ ++ V F+
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS-LDFHPSKEDLLCSCDNNSEIR 666
S + +SS D R+WDT + L+T +S + F P+ + +L + +N+ ++
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LK 220
Query: 667 YWSINNGSCAGVF---KCQSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQ 721
W + G C + K + F G+ I++ + +N + I +++T+ KLQ
Sbjct: 221 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 563 FSPDGKLLATGGHDKKAVLW------CTESFTVKSTLEEHTQWITDVRFSPSLSR-LATS 615
FSP+GK + D LW C +++T ++ ++ FS + + + +
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVTGGKWIVSG 258
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--DNNSEIRYW 668
S D V +W+ + + ++ GH+ V+S HP+ E+++ S +N+ I+ W
Sbjct: 259 SEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 311
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 252 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Query: 625 DTE 627
++
Sbjct: 312 KSD 314
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 77/177 (43%), Gaps = 20/177 (11%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ---------------- 598
TS V FS DG+ LATG + V ++ V ++
Sbjct: 64 TSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSD 123
Query: 599 -WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 657
+I V FSP LAT + DR +R+WD EN + GH + SLD+ PS D L
Sbjct: 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM-ILQGHEQDIYSLDYFPSG-DKLV 181
Query: 658 SCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA-AIENYISILDVET 713
S + +R W + G C+ + G T + P G+ +AA +++ + + D ET
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 238
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 611
P+S + S FSPDGK LATG D+ +W E+ + L+ H Q I + + PS +
Sbjct: 120 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK 179
Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
L + S DRTVR+WD SL T +++ P + + + +R W
Sbjct: 180 LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAV--SPGDGKYIAAGSLDRAVRVWDSE 237
Query: 672 NG 673
G
Sbjct: 238 TG 239
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 20/136 (14%)
Query: 558 VESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKSTLEE------HTQWITDVRFSPSL 609
V + SP DGK +A G D+ +W +E+ F V+ E H + V F+
Sbjct: 209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG 268
Query: 610 SRLATSSADRTVRVWDTENPD-----------YSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
+ + S DR+V++W+ +N + T+ GH V+S+ + E +L S
Sbjct: 269 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL-S 327
Query: 659 CDNNSEIRYWSINNGS 674
+ + +W +G+
Sbjct: 328 GSKDRGVLFWDKKSGN 343
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 33/178 (18%)
Query: 483 SLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKG 542
SL + DG+ ++ +P +++ GSLD V + S + +R+ E G G
Sbjct: 200 SLTLSIEDGVTTVAVSPGD----GKYIAAGSLDRAVRVWDS-ETGFLVERLDSENESGTG 254
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE------------SFTVK 590
+ + ++ F+ DG+ + +G D+ LW + S T +
Sbjct: 255 HKDSVYSVV-----------FTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCE 303
Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE--NPDYSLRTFTGHSTTVMSL 646
T H ++ V + + + + S DR V WD + NP L GH +V+S+
Sbjct: 304 VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP---LLMLQGHRNSVISV 358
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 512 GSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLA 571
GS D V + + AD + F +I ++V+ +S DG LA
Sbjct: 76 GSFDSTVSIWAKEESAD------------RTFEMDLLAIIEGHENEVKGVAWSNDGYYLA 123
Query: 572 TGGHDKKAVLWCT----ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627
T DK +W T E + S L+EH+Q + V + PS + LA+SS D TVR+W
Sbjct: 124 TCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDY 183
Query: 628 NPDY-SLRTFTGHSTTVMSLDFHPSKEDL-LCSCDNNSEIRYW 668
+ D+ + GH TV S DF ++ LCS ++S +R W
Sbjct: 184 DDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 89 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVC 716
C S + + F I++++ + I D + C
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 189
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 75/140 (53%), Gaps = 4/140 (2%)
Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646
+ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH + +
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDV 77
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIENY 705
+ S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 78 AW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 706 ISILDVETQVCRLKLQVSHS 725
+ I DV+T C LK +HS
Sbjct: 137 VRIWDVKTGKC-LKTLPAHS 155
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 81/169 (47%), Gaps = 7/169 (4%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V C+F+P L+ +G D+ +W ++ TL H+ ++ V F+ S + +SS
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 175
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMS-LDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
D R+WDT + L+T +S + F P+ + +L + +N+ ++ W + G C
Sbjct: 176 DGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKGKCL 233
Query: 677 GVF---KCQSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQ 721
+ K + F G+ I++ + +N + I +++T+ KLQ
Sbjct: 234 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
P+ + ++ D T+++WD L+T+TGH
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH 239
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 563 FSPDGKLLATGGHDKKAVLW------CTESFTVKSTLEEHTQWITDVRFSPSLSR-LATS 615
FSP+GK + D LW C +++T ++ ++ FS + + + +
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVTGGKWIVSG 261
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--DNNSEIRYW 668
S D V +W+ + + ++ GH+ V+S HP+ E+++ S +N+ I+ W
Sbjct: 262 SEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 314
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Query: 625 DTE 627
++
Sbjct: 315 KSD 317
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 89 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVC 716
C S + + F I++++ + I D + C
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 189
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 76/141 (53%), Gaps = 4/141 (2%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 76
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIEN 704
+ + S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 77 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 705 YISILDVETQVCRLKLQVSHS 725
+ I DV+T C LK +HS
Sbjct: 136 SVRIWDVKTGKC-LKTLPAHS 155
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 81/169 (47%), Gaps = 7/169 (4%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V C+F+P L+ +G D+ +W ++ TL H+ ++ V F+ S + +SS
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 175
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMS-LDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
D R+WDT + L+T +S + F P+ + +L + +N+ ++ W + G C
Sbjct: 176 DGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKGKCL 233
Query: 677 GVF---KCQSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQ 721
+ K + F G+ I++ + +N + I +++T+ KLQ
Sbjct: 234 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
P+ + ++ D T+++WD L+T+TGH
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH 239
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 563 FSPDGKLLATGGHDKKAVLW------CTESFTVKSTLEEHTQWITDVRFSPSLSR-LATS 615
FSP+GK + D LW C +++T ++ ++ FS + + + +
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVTGGKWIVSG 261
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--DNNSEIRYW 668
S D V +W+ + + ++ GH+ V+S HP+ E+++ S +N+ I+ W
Sbjct: 262 SEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 314
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Query: 625 DTE 627
++
Sbjct: 315 KSD 317
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 28 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 87
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 88 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 145
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVC 716
C S + + F I++++ + I D + C
Sbjct: 146 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 188
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 76/141 (53%), Gaps = 4/141 (2%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 17 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 75
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIEN 704
+ + S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 76 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 134
Query: 705 YISILDVETQVCRLKLQVSHS 725
+ I DV+T C LK +HS
Sbjct: 135 SVRIWDVKTGKC-LKTLPAHS 154
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 81/169 (47%), Gaps = 7/169 (4%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V C+F+P L+ +G D+ +W ++ TL H+ ++ V F+ S + +SS
Sbjct: 115 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 174
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMS-LDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
D R+WDT + L+T +S + F P+ + +L + +N+ ++ W + G C
Sbjct: 175 DGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKGKCL 232
Query: 677 GVF---KCQSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQ 721
+ K + F G+ I++ + +N + I +++T+ KLQ
Sbjct: 233 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 281
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 147 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 206
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
P+ + ++ D T+++WD L+T+TGH
Sbjct: 207 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH 238
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 563 FSPDGKLLATGGHDKKAVLW------CTESFTVKSTLEEHTQWITDVRFSPSLSR-LATS 615
FSP+GK + D LW C +++T ++ ++ FS + + + +
Sbjct: 205 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVTGGKWIVSG 260
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--DNNSEIRYW 668
S D V +W+ + + ++ GH+ V+S HP+ E+++ S +N+ I+ W
Sbjct: 261 SEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 313
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 254 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
Query: 625 DTE 627
++
Sbjct: 314 KSD 316
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 3/167 (1%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
+ T V S FSP+G+ LA+ DK +W + T+ H I+DV +S +
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
L ++S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W +
Sbjct: 96 LLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDV 153
Query: 671 NNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVC 716
G C S + + F I++++ + I D + C
Sbjct: 154 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 200
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 76/141 (53%), Gaps = 4/141 (2%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 29 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 87
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIEN 704
+ + S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 88 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 146
Query: 705 YISILDVETQVCRLKLQVSHS 725
+ I DV+T C LK +HS
Sbjct: 147 SVRIWDVKTGKC-LKTLPAHS 166
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 81/169 (47%), Gaps = 7/169 (4%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V C+F+P L+ +G D+ +W ++ TL H+ ++ V F+ S + +SS
Sbjct: 127 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 186
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMS-LDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
D R+WDT + L+T +S + F P+ + +L + +N+ ++ W + G C
Sbjct: 187 DGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKGKCL 244
Query: 677 GVF---KCQSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQ 721
+ K + F G+ I++ + +N + I +++T+ KLQ
Sbjct: 245 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 293
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 159 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 218
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
P+ + ++ D T+++WD L+T+TGH
Sbjct: 219 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH 250
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 563 FSPDGKLLATGGHDKKAVLW------CTESFTVKSTLEEHTQWITDVRFSPSLSR-LATS 615
FSP+GK + D LW C +++T ++ ++ FS + + + +
Sbjct: 217 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVTGGKWIVSG 272
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--DNNSEIRYW 668
S D V +W+ + + ++ GH+ V+S HP+ E+++ S +N+ I+ W
Sbjct: 273 SEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 325
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 266 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
Query: 625 DTE 627
++
Sbjct: 326 KSD 328
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 89 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVC 716
C S + + F I++++ + I D + C
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 189
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 76/141 (53%), Gaps = 4/141 (2%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 76
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIEN 704
+ + S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 77 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 705 YISILDVETQVCRLKLQVSHS 725
+ I DV+T C LK +HS
Sbjct: 136 SVRIWDVKTGKC-LKTLPAHS 155
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 81/169 (47%), Gaps = 7/169 (4%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V C+F+P L+ +G D+ +W ++ TL H+ ++ V F+ S + +SS
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 175
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMS-LDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
D R+WDT + L+T +S + F P+ + +L + +N+ ++ W + G C
Sbjct: 176 DGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKGKCL 233
Query: 677 GVF---KCQSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQ 721
+ K + F G+ I++ + +N + I +++T+ KLQ
Sbjct: 234 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
P+ + ++ D T+++WD L+T+TGH
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH 239
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 563 FSPDGKLLATGGHDKKAVLW------CTESFTVKSTLEEHTQWITDVRFSPSLSR-LATS 615
FSP+GK + D LW C +++T ++ ++ FS + + + +
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVTGGKWIVSG 261
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--DNNSEIRYW 668
S D V +W+ + + ++ GH+ V+S HP+ E+++ S +N+ I+ W
Sbjct: 262 SEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 314
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Query: 625 DTE 627
++
Sbjct: 315 KSD 317
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 47 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 106
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 107 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 164
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVC 716
C S + + F I++++ + I D + C
Sbjct: 165 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 207
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 75/140 (53%), Gaps = 4/140 (2%)
Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646
+ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH + +
Sbjct: 37 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDV 95
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIENY 705
+ S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 96 AWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 154
Query: 706 ISILDVETQVCRLKLQVSHS 725
+ I DV+T C LK +HS
Sbjct: 155 VRIWDVKTGKC-LKTLPAHS 173
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 81/169 (47%), Gaps = 7/169 (4%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V C+F+P L+ +G D+ +W ++ TL H+ ++ V F+ S + +SS
Sbjct: 134 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 193
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMS-LDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
D R+WDT + L+T +S + F P+ + +L + +N+ ++ W + G C
Sbjct: 194 DGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKGKCL 251
Query: 677 GVF---KCQSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQ 721
+ K + F G+ I++ + +N + I +++T+ KLQ
Sbjct: 252 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 300
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 166 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 225
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
P+ + ++ D T+++WD L+T+TGH
Sbjct: 226 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH 257
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 563 FSPDGKLLATGGHDKKAVLW------CTESFTVKSTLEEHTQWITDVRFSPSLSR-LATS 615
FSP+GK + D LW C +++T ++ ++ FS + + + +
Sbjct: 224 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVTGGKWIVSG 279
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--DNNSEIRYW 668
S D V +W+ + + ++ GH+ V+S HP+ E+++ S +N+ I+ W
Sbjct: 280 SEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 332
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 273 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
Query: 625 DTE 627
++
Sbjct: 333 KSD 335
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 22 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 81
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 82 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 139
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVC 716
C S + + F I++++ + I D + C
Sbjct: 140 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 182
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 76/141 (53%), Gaps = 4/141 (2%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 11 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 69
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIEN 704
+ + S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 70 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 128
Query: 705 YISILDVETQVCRLKLQVSHS 725
+ I DV+T C LK +HS
Sbjct: 129 SVRIWDVKTGKC-LKTLPAHS 148
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 81/169 (47%), Gaps = 7/169 (4%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V C+F+P L+ +G D+ +W ++ TL H+ ++ V F+ S + +SS
Sbjct: 109 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 168
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMS-LDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
D R+WDT + L+T +S + F P+ + +L + +N+ ++ W + G C
Sbjct: 169 DGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKGKCL 226
Query: 677 GVF---KCQSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQ 721
+ K + F G+ I++ + +N + I +++T+ KLQ
Sbjct: 227 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 275
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 141 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 200
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
P+ + ++ D T+++WD L+T+TGH
Sbjct: 201 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH 232
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 563 FSPDGKLLATGGHDKKAVLW------CTESFTVKSTLEEHTQWITDVRFSPSLSR-LATS 615
FSP+GK + D LW C +++T ++ ++ FS + + + +
Sbjct: 199 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVTGGKWIVSG 254
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--DNNSEIRYW 668
S D V +W+ + + ++ GH+ V+S HP+ E+++ S +N+ I+ W
Sbjct: 255 SEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 307
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 248 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
Query: 625 DTE 627
++
Sbjct: 308 KSD 310
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 82
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 83 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 140
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVC 716
C S + + F I++++ + I D + C
Sbjct: 141 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 183
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 76/141 (53%), Gaps = 4/141 (2%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 70
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIEN 704
+ + S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 71 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 705 YISILDVETQVCRLKLQVSHS 725
+ I DV+T C LK +HS
Sbjct: 130 SVRIWDVKTGKC-LKTLPAHS 149
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 81/169 (47%), Gaps = 7/169 (4%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V C+F+P L+ +G D+ +W ++ TL H+ ++ V F+ S + +SS
Sbjct: 110 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 169
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMS-LDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
D R+WDT + L+T +S + F P+ + +L + +N+ ++ W + G C
Sbjct: 170 DGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKGKCL 227
Query: 677 GVF---KCQSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQ 721
+ K + F G+ I++ + +N + I +++T+ KLQ
Sbjct: 228 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 201
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
P+ + ++ D T+++WD L+T+TGH
Sbjct: 202 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH 233
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 563 FSPDGKLLATGGHDKKAVLW------CTESFTVKSTLEEHTQWITDVRFSPSLSR-LATS 615
FSP+GK + D LW C +++T ++ ++ FS + + + +
Sbjct: 200 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVTGGKWIVSG 255
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--DNNSEIRYW 668
S D V +W+ + + ++ GH+ V+S HP+ E+++ S +N+ I+ W
Sbjct: 256 SEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 308
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 249 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Query: 625 DTE 627
++
Sbjct: 309 KSD 311
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 24 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 83
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 84 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 141
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVC 716
C S + + F I++++ + I D + C
Sbjct: 142 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 184
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 76/141 (53%), Gaps = 4/141 (2%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 13 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 71
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIEN 704
+ + S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 72 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 130
Query: 705 YISILDVETQVCRLKLQVSHS 725
+ I DV+T C LK +HS
Sbjct: 131 SVRIWDVKTGKC-LKTLPAHS 150
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 81/169 (47%), Gaps = 7/169 (4%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V C+F+P L+ +G D+ +W ++ TL H+ ++ V F+ S + +SS
Sbjct: 111 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 170
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMS-LDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
D R+WDT + L+T +S + F P+ + +L + +N+ ++ W + G C
Sbjct: 171 DGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKGKCL 228
Query: 677 GVF---KCQSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQ 721
+ K + F G+ I++ + +N + I +++T+ KLQ
Sbjct: 229 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 277
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 143 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 202
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
P+ + ++ D T+++WD L+T+TGH
Sbjct: 203 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH 234
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 563 FSPDGKLLATGGHDKKAVLW------CTESFTVKSTLEEHTQWITDVRFSPSLSR-LATS 615
FSP+GK + D LW C +++T ++ ++ FS + + + +
Sbjct: 201 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVTGGKWIVSG 256
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--DNNSEIRYW 668
S D V +W+ + + ++ GH+ V+S HP+ E+++ S +N+ I+ W
Sbjct: 257 SEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 309
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 250 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
Query: 625 DTE 627
++
Sbjct: 310 KSD 312
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 105 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVC 716
C S + + F I++++ + I D + C
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 205
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 75/140 (53%), Gaps = 4/140 (2%)
Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646
+ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH + +
Sbjct: 35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDV 93
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIENY 705
+ S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 94 AWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 152
Query: 706 ISILDVETQVCRLKLQVSHS 725
+ I DV+T C LK +HS
Sbjct: 153 VRIWDVKTGKC-LKTLPAHS 171
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 81/169 (47%), Gaps = 7/169 (4%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V C+F+P L+ +G D+ +W ++ TL H+ ++ V F+ S + +SS
Sbjct: 132 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 191
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMS-LDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
D R+WDT + L+T +S + F P+ + +L + +N+ ++ W + G C
Sbjct: 192 DGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKGKCL 249
Query: 677 GVF---KCQSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQ 721
+ K + F G+ I++ + +N + I +++T+ KLQ
Sbjct: 250 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 298
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 164 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 223
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
P+ + ++ D T+++WD L+T+TGH
Sbjct: 224 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH 255
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 563 FSPDGKLLATGGHDKKAVLW------CTESFTVKSTLEEHTQWITDVRFSPSLSR-LATS 615
FSP+GK + D LW C +++T ++ ++ FS + + + +
Sbjct: 222 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVTGGKWIVSG 277
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--DNNSEIRYW 668
S D V +W+ + + ++ GH+ V+S HP+ E+++ S +N+ I+ W
Sbjct: 278 SEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 330
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Query: 625 DTE 627
++
Sbjct: 331 KSD 333
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 19 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 78
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 79 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 136
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVC 716
C S + + F I++++ + I D + C
Sbjct: 137 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 179
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 76/141 (53%), Gaps = 4/141 (2%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 8 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 66
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIEN 704
+ + S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 67 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 125
Query: 705 YISILDVETQVCRLKLQVSHS 725
+ I DV+T C LK +HS
Sbjct: 126 SVRIWDVKTGKC-LKTLPAHS 145
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 81/169 (47%), Gaps = 7/169 (4%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V C+F+P L+ +G D+ +W ++ TL H+ ++ V F+ S + +SS
Sbjct: 106 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 165
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMS-LDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
D R+WDT + L+T +S + F P+ + +L + +N+ ++ W + G C
Sbjct: 166 DGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKGKCL 223
Query: 677 GVF---KCQSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQ 721
+ K + F G+ I++ + +N + I +++T+ KLQ
Sbjct: 224 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 272
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 138 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 197
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
P+ + ++ D T+++WD L+T+TGH
Sbjct: 198 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH 229
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 563 FSPDGKLLATGGHDKKAVLW------CTESFTVKSTLEEHTQWITDVRFSPSLSR-LATS 615
FSP+GK + D LW C +++T ++ ++ FS + + + +
Sbjct: 196 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVTGGKWIVSG 251
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--DNNSEIRYW 668
S D V +W+ + + ++ GH+ V+S HP+ E+++ S +N+ I+ W
Sbjct: 252 SEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 304
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 245 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
Query: 625 DTE 627
++
Sbjct: 305 KSD 307
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 82
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 83 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 140
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVC 716
C S + + F I++++ + I D + C
Sbjct: 141 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 183
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 76/141 (53%), Gaps = 4/141 (2%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 70
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIEN 704
+ + S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 71 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 705 YISILDVETQVCRLKLQVSHS 725
+ I DV+T C LK +HS
Sbjct: 130 SVRIWDVKTGKC-LKTLPAHS 149
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 81/169 (47%), Gaps = 7/169 (4%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V C+F+P L+ +G D+ +W ++ TL H+ ++ V F+ S + +SS
Sbjct: 110 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 169
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMS-LDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
D R+WDT + L+T +S + F P+ + +L + +N+ ++ W + G C
Sbjct: 170 DGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKGKCL 227
Query: 677 GVF---KCQSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQ 721
+ K + F G+ I++ + +N + I +++T+ KLQ
Sbjct: 228 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 201
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
P+ + ++ D T+++WD L+T+TGH
Sbjct: 202 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH 233
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 563 FSPDGKLLATGGHDKKAVLW------CTESFTVKSTLEEHTQWITDVRFSPSLSR-LATS 615
FSP+GK + D LW C +++T ++ ++ FS + + + +
Sbjct: 200 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVTGGKWIVSG 255
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--DNNSEIRYW 668
S D V +W+ + + ++ GH+ V+S HP+ E+++ S +N+ I+ W
Sbjct: 256 SEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 308
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 249 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Query: 625 DTE 627
++
Sbjct: 309 KSD 311
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 86 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGM 143
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVC 716
C S + + F I++++ + I D + C
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 186
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 4/140 (2%)
Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646
+ + TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH + +
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDV 74
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIENY 705
+ S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 75 AW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 706 ISILDVETQVCRLKLQVSHS 725
+ I DV+T +C LK +HS
Sbjct: 134 VRIWDVKTGMC-LKTLPAHS 152
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 81/169 (47%), Gaps = 7/169 (4%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V C+F+P L+ +G D+ +W ++ TL H+ ++ V F+ S + +SS
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 172
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMS-LDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
D R+WDT + L+T +S + F P+ + +L + +N +++ W + G C
Sbjct: 173 DGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-DLKLWDYSKGKCL 230
Query: 677 GVF---KCQSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQ 721
+ K + F G+ I++ + +N + I +++T+ KLQ
Sbjct: 231 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQ 279
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
P+ + ++ D +++WD L+T+TGH
Sbjct: 205 PNGKYILAATLDNDLKLWDYSKGK-CLKTYTGH 236
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 563 FSPDGKLLATGGHDKKAVLW------CTESFTVKSTLEEHTQWITDVRFSPSLSR-LATS 615
FSP+GK + D LW C +++T ++ ++ FS + + + +
Sbjct: 203 FSPNGKYILAATLDNDLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVTGGKWIVSG 258
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--DNNSEIRYW 668
S D V +W+ + + ++ GH+ V+S HP+ E+++ S +N+ I+ W
Sbjct: 259 SEDNMVYIWNLQTKEI-VQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 311
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 252 GKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Query: 625 DTE 627
++
Sbjct: 312 KSD 314
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 86 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGM 143
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVC 716
C S + + F I++++ + I D + C
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 186
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 4/140 (2%)
Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646
+ + TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH + +
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDV 74
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIENY 705
+ S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 75 AW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 706 ISILDVETQVCRLKLQVSHS 725
+ I DV+T +C LK +HS
Sbjct: 134 VRIWDVKTGMC-LKTLPAHS 152
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 81/169 (47%), Gaps = 7/169 (4%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V C+F+P L+ +G D+ +W ++ TL H+ ++ V F+ S + +SS
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 172
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMS-LDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
D R+WDT + L+T +S + F P+ + +L + +N+ ++ W + G C
Sbjct: 173 DGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKGKCL 230
Query: 677 GVF---KCQSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQ 721
+ K + F G+ I++ + +N + I +++T+ KLQ
Sbjct: 231 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQ 279
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
P+ + ++ D T+++WD L+T+TGH
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH 236
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 563 FSPDGKLLATGGHDKKAVLW------CTESFTVKSTLEEHTQWITDVRFSPSLSR-LATS 615
FSP+GK + D LW C +++T ++ ++ FS + + + +
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVTGGKWIVSG 258
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--DNNSEIRYW 668
S D V +W+ + + ++ GH+ V+S HP+ E+++ S +N+ I+ W
Sbjct: 259 SEDNMVYIWNLQTKEI-VQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 311
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 252 GKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Query: 625 DTE 627
++
Sbjct: 312 KSD 314
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
Q + +S V FSPDG+ +A+ DK LW ++ TL H+ + V FSP
Sbjct: 132 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSP 190
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
+A++S D+TV++W+ L+T TGHS++V + F P + + + D+ + ++
Sbjct: 191 DGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKL 247
Query: 668 WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR 717
W+ N + S + F+P I +A+ + + + + Q+ +
Sbjct: 248 WNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQ 297
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 4/171 (2%)
Query: 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
Q + +S V FSPDG+ +A+ DK LW ++ TL H+ + V FS
Sbjct: 336 HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFS 394
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P +A++S D+TV++W+ L+T TGHS++V + F P + + + D+ + ++
Sbjct: 395 PDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT-VK 451
Query: 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR 717
W+ N + S + F P I +A+ + + + + Q+ +
Sbjct: 452 LWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ 502
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 83/171 (48%), Gaps = 4/171 (2%)
Query: 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
E + A +S V FSPDG+ +A+ DK LW ++ TL H+ + V FS
Sbjct: 8 ERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFS 66
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P +A++S D+TV++W+ L+T TGHS++V + F P + + + D+ + ++
Sbjct: 67 PDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VK 123
Query: 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR 717
W+ N + S + F P I +A+ + + + + Q+ +
Sbjct: 124 LWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ 174
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 82/170 (48%), Gaps = 4/170 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
Q + +S V FSPDG+ +A+ DK LW ++ TL H+ + V FSP
Sbjct: 50 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSP 108
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
+A++S D+TV++W+ L+T TGHS++V + F P + + + D+ + ++
Sbjct: 109 DGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKL 165
Query: 668 WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR 717
W+ N + S + F P I +A+ + + + + Q+ +
Sbjct: 166 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ 215
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
Q + +S V F PDG+ +A+ DK LW ++ TL H+ + V FSP
Sbjct: 255 LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSP 313
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
+A++S D+TV++W+ N + L+T TGHS++V + F P + + + D+ + ++
Sbjct: 314 DGQTIASASDDKTVKLWN-RNGQH-LQTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKL 370
Query: 668 WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR 717
W+ N + S + F P I +A+ + + + + Q+ +
Sbjct: 371 WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ 420
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 79/157 (50%), Gaps = 5/157 (3%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
Q + +S V FSPDG+ +A+ DK LW ++ TL H+ + V FSP
Sbjct: 173 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSP 231
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
+A++S D+TV++W+ L+T TGHS++V + F P + + + D+ + ++
Sbjct: 232 DGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKT-VKL 288
Query: 668 WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN 704
W+ N + S + F P G+ +A+A ++
Sbjct: 289 WNRNGQLLQTLTGHSSSVWGVAFSPD-GQTIASASDD 324
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 5/154 (3%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
Q + +S V FSPD + +A+ DK LW ++ TL H+ + V FSP
Sbjct: 419 LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSP 477
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
+A++S D+TV++W+ L+T TGHS++V + F P + + + D+ + ++
Sbjct: 478 DGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKL 534
Query: 668 WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 701
W+ N + S + F P G+ +A+A
Sbjct: 535 WNRNGQLLQTLTGHSSSVWGVAFSPD-GQTIASA 567
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
Q + +S V FSPDG+ +A+ DK LW ++ TL H+ + V FSP
Sbjct: 501 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSP 559
Query: 608 SLSRLATSSADRTVRVWD 625
+A++S+D+TV++W+
Sbjct: 560 DGQTIASASSDKTVKLWN 577
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCT---ESFTVKSTLEEHTQWITDVRFSPSLSRL 612
++V+S ++P G LLAT DK +W + + S L HTQ + V + PS L
Sbjct: 106 NEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELL 165
Query: 613 ATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
A++S D TV+++ E D+ T GH +TV SL F PS + L SC ++ +R W
Sbjct: 166 ASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLA-SCSDDRTVRIW 221
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 5/113 (4%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADR 619
++P G LLA+ G D++ +W TE S+ KS L E H + + V +SP + LA++S D
Sbjct: 24 WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83
Query: 620 TVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
T +W D+ + T GH V S+ + PS +LL +C + + W ++
Sbjct: 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVD 135
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 563 FSPDGKLLATGGHDKKAVLW--CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
+SP G LA+ D +W + F +TLE H + V ++PS + LAT S D++
Sbjct: 69 WSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKS 128
Query: 621 VRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDL 655
V VW+ + D + H+ V + +HPS+E L
Sbjct: 129 VWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELL 165
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--F 587
RD+ EV + + ++ + T V+ + P +LLA+ +D L+ E +
Sbjct: 125 RDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW 184
Query: 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
+TLE H + + F PS RLA+ S DRTVR+W
Sbjct: 185 VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 24/137 (17%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLW------------CT---ESFTVKSTLEE-HTQW 599
S V S F P G+ LA+ D+ +W C+ S+ TL H++
Sbjct: 195 STVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRT 254
Query: 600 ITDVRFSPSLSRLATSSADRTVRVW------DTENPDYSL--RTFTGHSTTVMSLDFHPS 651
I D+ + LAT+ D +RV+ D + P +SL HS V + ++P
Sbjct: 255 IYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPK 314
Query: 652 KEDLLCSCDNNSEIRYW 668
+ LL SC ++ E+ +W
Sbjct: 315 EPGLLASCSDDGEVAFW 331
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 86/192 (44%), Gaps = 25/192 (13%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
+ T V+ F GKLLA+ D LW + F T+ H ++ V P+
Sbjct: 146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD 205
Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWS 669
+ ++S D+T+++W+ + Y ++TFTGH V + P+++ L+ SC N+ +R W
Sbjct: 206 HIVSASRDKTIKMWEVQT-GYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWV 262
Query: 670 INNGSCAG-------VFKCQSGATQMRFQ----------PRLGR----ILAAAIENYISI 708
+ C V +C S A + + + G+ +L+ + + I +
Sbjct: 263 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 322
Query: 709 LDVETQVCRLKL 720
DV T +C + L
Sbjct: 323 WDVSTGMCLMTL 334
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 5/161 (3%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
F P ++ + D +W E+ + TL+ HT + D+ F S LA+ SAD T++
Sbjct: 116 FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 175
Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 682
+WD + + +RT GH V S+ P+ D + S + I+ W + G C F
Sbjct: 176 LWDFQGFE-CIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGH 233
Query: 683 SGATQMRFQPRLGRILAAAIEN--YISILDVETQVCRLKLQ 721
+M +P L A+ N + + V T+ C+ +L+
Sbjct: 234 REWVRM-VRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 273
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 3/128 (2%)
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649
K L H +T V F P S + ++S D T++VWD E D+ RT GH+ +V + F
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE-RTLKGHTDSVQDISFD 159
Query: 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISI 708
S + LL SC + I+ W C + + P I++A+ + I +
Sbjct: 160 HSGK-LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 218
Query: 709 LDVETQVC 716
+V+T C
Sbjct: 219 WEVQTGYC 226
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626
G L +G DK +W + TL H W+ V F + + + D+T+RVWD
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367
Query: 627 ENPDYSLRTFTGHSTTVMSLDFHPS 651
+N ++T H V SLDFH +
Sbjct: 368 KNKR-CMKTLNAHEHFVTSLDFHKT 391
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
F GK + + DK +W ++ TL H ++T + F + + T S D+TV+
Sbjct: 346 FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVK 405
Query: 623 VWD 625
VW+
Sbjct: 406 VWE 408
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 86/186 (46%), Gaps = 18/186 (9%)
Query: 522 LSPDDADPRDRVGRSAEVGK-----GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 576
L D + R+ S++ GK FT + + + V +C ++P G +A GG D
Sbjct: 68 LCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLD 127
Query: 577 KKAVLW-----CTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630
K ++ E+ K ++ HT +++ F+ S ++ T+S D T +WD E+
Sbjct: 128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ 187
Query: 631 YSLRTFTGHSTTVMSLDFHPSKED---LLCSCDNNSEIRYWSINNGSCAGVFKC-QSGAT 686
L++F GH V+ LD PS+ + CD + + W + +G C F+ +S
Sbjct: 188 L-LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMV--WDMRSGQCVQAFETHESDVN 244
Query: 687 QMRFQP 692
+R+ P
Sbjct: 245 SVRYYP 250
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 5/132 (3%)
Query: 564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623
S G +GG DKKA++W S E H + VR+ PS A+ S D T R+
Sbjct: 207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL 266
Query: 624 WDTENPDYSLRTFTGHSTT--VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK 680
+D D + ++ S S+DF S LL + N+ I W + GS + F
Sbjct: 267 YDLR-ADREVAIYSKESIIFGASSVDFSLSGR-LLFAGYNDYTINVWDVLKGSRVSILFG 324
Query: 681 CQSGATQMRFQP 692
++ + +R P
Sbjct: 325 HENRVSTLRVSP 336
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
FS G+LL G +D +W + S L H ++ +R SP + + S D T+R
Sbjct: 292 FSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLR 351
Query: 623 VW 624
VW
Sbjct: 352 VW 353
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 4/142 (2%)
Query: 535 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594
++ +V K T + I A +V C FS D +AT DKK +W + + + T +
Sbjct: 637 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD 696
Query: 595 EHTQWITDVRFSPSLSR--LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
EH++ + F+ + LAT S D +++WD N T GH+ +V F P
Sbjct: 697 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNHCRFSPDD 755
Query: 653 EDLLCSCDNNSEIRYWSINNGS 674
E LL SC + +R W + + +
Sbjct: 756 E-LLASCSADGTLRLWDVRSAN 776
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 519 ESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS--PDGKLLATGGHD 576
+S+++ AD + ++ SA T+ E + +V CHF+ + LLATG +D
Sbjct: 669 DSYIATCSADKKVKIWDSATGKLVHTYDE------HSEQVNCCHFTNKSNHLLLATGSND 722
Query: 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630
LW ++T+ HT + RFSP LA+ SAD T+R+WD + +
Sbjct: 723 FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN 776
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 4/164 (2%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 611
P + + +C FS DG+ +A+ G DK ++ E+ ++ H + FS S
Sbjct: 613 PHTDAVYHAC-FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY 671
Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF-HPSKEDLLCSCDNNSEIRYWSI 670
+AT SAD+ V++WD+ + T+ HS V F + S LL + N+ ++ W +
Sbjct: 672 IATCSADKKVKIWDSATGKL-VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL 730
Query: 671 NNGSCAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 713
N C +F + RF P + + + + + + DV +
Sbjct: 731 NQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 774
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
S ++ C FSP L LW +S + H W+ V FSP S T+
Sbjct: 841 STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTA 900
Query: 616 SADRTVRVWDTE 627
S D+T+RVW+T+
Sbjct: 901 SDDQTIRVWETK 912
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 12/147 (8%)
Query: 548 FQLIPAST--------SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW 599
QLI T ++V C SP + +A G D + + V S+ H +
Sbjct: 946 LQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKA 1005
Query: 600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659
+ ++F+ L +SS D ++VW+ + DY H TV DF ++ L S
Sbjct: 1006 VRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF--LQAHQETVK--DFRLLQDSRLLSW 1061
Query: 660 DNNSEIRYWSINNGSCAGVFKCQSGAT 686
+ ++ W++ G F C G
Sbjct: 1062 SFDGTVKVWNVITGRIERDFTCHQGTV 1088
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 63/138 (45%), Gaps = 11/138 (7%)
Query: 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
++ + A V+ D +LL + D +W + ++ H + S
Sbjct: 1036 DYVFLQAHQETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAIS 1094
Query: 607 PSLSRLATSSADRTVRVW--DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664
++ +++SAD+T ++W D +P + L+ GH+ V F LL + D+N E
Sbjct: 1095 SDATKFSSTSADKTAKIWSFDLLSPLHELK---GHNGCVRCSAFSLDG-ILLATGDDNGE 1150
Query: 665 IRYWSINNG----SCAGV 678
IR W++++G SCA +
Sbjct: 1151 IRIWNVSDGQLLHSCAPI 1168
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 5/125 (4%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655
HT + FS R+A+ AD+T++V+ E + L H V+ F S +
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE-KLLDIKAHEDEVLCCAF-SSDDSY 671
Query: 656 LCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIEN--YISILDVE 712
+ +C + +++ W G + S F + +L A N ++ + D+
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 713 TQVCR 717
+ CR
Sbjct: 732 QKECR 736
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 4/142 (2%)
Query: 535 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594
++ +V K T + I A +V C FS D +AT DKK +W + + + T +
Sbjct: 644 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD 703
Query: 595 EHTQWITDVRFSPSLSR--LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
EH++ + F+ + LAT S D +++WD N T GH+ +V F P
Sbjct: 704 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNHCRFSPDD 762
Query: 653 EDLLCSCDNNSEIRYWSINNGS 674
E LL SC + +R W + + +
Sbjct: 763 E-LLASCSADGTLRLWDVRSAN 783
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 519 ESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS--PDGKLLATGGHD 576
+S+++ AD + ++ SA T+ E + +V CHF+ + LLATG +D
Sbjct: 676 DSYIATCSADKKVKIWDSATGKLVHTYDE------HSEQVNCCHFTNKSNHLLLATGSND 729
Query: 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630
LW ++T+ HT + RFSP LA+ SAD T+R+WD + +
Sbjct: 730 FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN 783
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 4/164 (2%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 611
P + + +C FS DG+ +A+ G DK ++ E+ ++ H + FS S
Sbjct: 620 PHTDAVYHAC-FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY 678
Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF-HPSKEDLLCSCDNNSEIRYWSI 670
+AT SAD+ V++WD+ + T+ HS V F + S LL + N+ ++ W +
Sbjct: 679 IATCSADKKVKIWDSATGKL-VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL 737
Query: 671 NNGSCAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 713
N C +F + RF P + + + + + + DV +
Sbjct: 738 NQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 781
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
S ++ C FSP L LW +S + H W+ V FSP S T+
Sbjct: 848 STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTA 907
Query: 616 SADRTVRVWDTE 627
S D+T+RVW+T+
Sbjct: 908 SDDQTIRVWETK 919
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 12/147 (8%)
Query: 548 FQLIPAST--------SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW 599
QLI T ++V C SP + +A G D + + V S+ H +
Sbjct: 953 LQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKA 1012
Query: 600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659
+ ++F+ L +SS D ++VW+ + DY H TV DF ++ L S
Sbjct: 1013 VRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF--LQAHQETVK--DFRLLQDSRLLSW 1068
Query: 660 DNNSEIRYWSINNGSCAGVFKCQSGAT 686
+ ++ W++ G F C G
Sbjct: 1069 SFDGTVKVWNVITGRIERDFTCHQGTV 1095
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 63/138 (45%), Gaps = 11/138 (7%)
Query: 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
++ + A V+ D +LL + D +W + ++ H + S
Sbjct: 1043 DYVFLQAHQETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAIS 1101
Query: 607 PSLSRLATSSADRTVRVW--DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664
++ +++SAD+T ++W D +P + L+ GH+ V F LL + D+N E
Sbjct: 1102 SDATKFSSTSADKTAKIWSFDLLSPLHELK---GHNGCVRCSAFSLDG-ILLATGDDNGE 1157
Query: 665 IRYWSINNG----SCAGV 678
IR W++++G SCA +
Sbjct: 1158 IRIWNVSDGQLLHSCAPI 1175
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 5/125 (4%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655
HT + FS R+A+ AD+T++V+ E + L H V+ F S +
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE-KLLDIKAHEDEVLCCAF-SSDDSY 678
Query: 656 LCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIEN--YISILDVE 712
+ +C + +++ W G + S F + +L A N ++ + D+
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 738
Query: 713 TQVCR 717
+ CR
Sbjct: 739 QKECR 743
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 4/136 (2%)
Query: 535 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594
++ +V K T + I A +V C FS D + +AT DKK +W + + + T +
Sbjct: 643 KTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYD 702
Query: 595 EHTQWITDVRFSPSLSR--LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
EH++ + F+ S LAT S+D +++WD N T GH+ +V F P
Sbjct: 703 EHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL-NQKECRNTMFGHTNSVNHCRFSPD- 760
Query: 653 EDLLCSCDNNSEIRYW 668
+ LL SC + ++ W
Sbjct: 761 DKLLASCSADGTLKLW 776
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
S ++ C FSP L LW T+S + + H W+ V FSP S TS
Sbjct: 847 STIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTS 906
Query: 616 SADRTVRVWDTE 627
S D+T+R+W+T+
Sbjct: 907 SDDQTIRLWETK 918
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 555 TSKVESCHF--SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL 612
+ +V CHF S LLATG D LW ++T+ HT + RFSP L
Sbjct: 705 SEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLL 764
Query: 613 ATSSADRTVRVWD 625
A+ SAD T+++WD
Sbjct: 765 ASCSADGTLKLWD 777
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 4/143 (2%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 611
P + + +C FS DG+ +A+ G DK ++ E+ ++ H + FS
Sbjct: 619 PHTDAVYHAC-FSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRF 677
Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC-DNNSEIRYWSI 670
+AT S D+ V++W++ + + T+ HS V F S LL + ++ ++ W +
Sbjct: 678 IATCSVDKKVKIWNSMTGEL-VHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL 736
Query: 671 NNGSCAG-VFKCQSGATQMRFQP 692
N C +F + RF P
Sbjct: 737 NQKECRNTMFGHTNSVNHCRFSP 759
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 610 SRLATSSADRTVRVW--DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
++ +++SAD+T ++W D P + LR GH+ V F LL + D+N EIR
Sbjct: 1104 TKFSSTSADKTAKIWSFDLLLPLHELR---GHNGCVRCSAF-SVDSTLLATGDDNGEIRI 1159
Query: 668 WSINNG 673
W+++NG
Sbjct: 1160 WNVSNG 1165
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 6/139 (4%)
Query: 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 608
Q+ + ++V C SP + +A G + + + + + +H + + ++F+
Sbjct: 961 QIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTAD 1020
Query: 609 LSRLATSSADRTVRVWDTE-NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
L +SS D ++VW+ + + LR GH TV DF K L S + ++
Sbjct: 1021 EKTLISSSDDAEIQVWNWQLDKCIFLR---GHQETVK--DFRLLKNSRLLSWSFDGTVKV 1075
Query: 668 WSINNGSCAGVFKCQSGAT 686
W+I G+ F C G
Sbjct: 1076 WNIITGNKEKDFVCHQGTV 1094
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 49/129 (37%), Gaps = 10/129 (7%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V SC S D ++ DK A +W + L H + FS + LAT
Sbjct: 1094 VLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDD 1153
Query: 618 DRTVRVWDTENPD-------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
+ +R+W+ N + S H V L F P + L+ + I++W++
Sbjct: 1154 NGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISA---GGYIKWWNV 1210
Query: 671 NNGSCAGVF 679
G + F
Sbjct: 1211 VTGESSQTF 1219
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 76/152 (50%), Gaps = 12/152 (7%)
Query: 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625
DG+ + +G +D +W E+ T TL+ HT + ++F + + S D ++RVWD
Sbjct: 248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG--IHVVSGSLDTSIRVWD 305
Query: 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVFKC 681
E + + T TGH + ++ K+++L S + +S ++ W I G C G K
Sbjct: 306 VETGN-CIHTLTGHQSLTSGMEL---KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH 361
Query: 682 QSGATQMRFQPRLGRILAAAIENYISILDVET 713
QS T ++F ++ ++ + + + D++T
Sbjct: 362 QSAVTCLQFNKNF--VITSSDDGTVKLWDLKT 391
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 61/150 (40%), Gaps = 11/150 (7%)
Query: 569 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628
++ +G D+ +W E+ TL HT + + R+ + S D T+RVWD E
Sbjct: 171 IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK--RVVSGSRDATLRVWDIET 228
Query: 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQM 688
L GH V + + + + S + ++ W +C + G T
Sbjct: 229 GQ-CLHVLMGHVAAVRCVQYDGRR---VVSGAYDFMVKVWDPETETCLHTLQ---GHTNR 281
Query: 689 RFQPRLG--RILAAAIENYISILDVETQVC 716
+ + +++ +++ I + DVET C
Sbjct: 282 VYSLQFDGIHVVSGSLDTSIRVWDVETGNC 311
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 3/155 (1%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
FSPD + LATG H K ++ ES + +L+ ++I + +SP LA+ + D +
Sbjct: 130 FSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 189
Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 682
++D L T GH+ + SL F P + LL + ++ I+ + + + + AG
Sbjct: 190 IFDIATGKL-LHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQHANLAGTLSGH 247
Query: 683 -SGATQMRFQPRLGRILAAAIENYISILDVETQVC 716
S + F P ++++ + + + DV T+ C
Sbjct: 248 ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC 282
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 3/154 (1%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
+ S +SPDGK LA+G D ++ + + TLE H I + FSP L T+S
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677
D ++++D ++ + + T +GH++ V+++ F P + S + S W + +C
Sbjct: 227 DGYIKIYDVQHANLA-GTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKV-WDVGTRTCVH 284
Query: 678 -VFKCQSGATQMRFQPRLGRILAAAIENYISILD 710
F Q +++ +I++ + I I D
Sbjct: 285 TFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 13/142 (9%)
Query: 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637
K W E ++ +LE H + V S +L A+SS D +R+WD EN +++
Sbjct: 61 KVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGK-QIKSID 119
Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL--- 694
+L F P + L + + ++ + + +G K S T+ +F +
Sbjct: 120 AGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGK-----KEYSLDTRGKFILSIAYS 173
Query: 695 --GRILAA-AIENYISILDVET 713
G+ LA+ AI+ I+I D+ T
Sbjct: 174 PDGKYLASGAIDGIINIFDIAT 195
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 107/242 (44%), Gaps = 38/242 (15%)
Query: 502 LTDMDRFVDDGSL-DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560
LT + FV D +L +N + S D+ R ++ G T+ F S+V S
Sbjct: 72 LTGHNHFVSDLALSQENCFAISSS-----WDKTLRLWDLRTGTTYKRF---VGHQSEVYS 123
Query: 561 CHFSPDGKLLATGGHDKKAVLW-----CTESFTVKSTLEEHTQWITDVRFSPSLS----- 610
FSPD + + + G +++ LW C S K E H+ W++ VR+SP +
Sbjct: 124 VAFSPDNRQILSAGAEREIKLWNILGECKFSSAEK---ENHSDWVSCVRYSPIMKSANKV 180
Query: 611 -----RLATSSADRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664
A+ D ++VW+T ++ +R TF H + V L P+ + + + + +
Sbjct: 181 QPFAPYFASVGWDGRLKVWNT---NFQIRYTFKAHESNVNHLSISPNGK-YIATGGKDKK 236
Query: 665 IRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ----VCRLK 719
+ W I N + F S Q+ F P+L + +A + + I ++ TQ VC ++
Sbjct: 237 LLIWDILNLTYPQREFDAGSTINQIAFNPKL-QWVAVGTDQGVKIFNLMTQSKAPVCTIE 295
Query: 720 LQ 721
+
Sbjct: 296 AE 297
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 10/117 (8%)
Query: 566 DGKLLATGGHDKKAVLWCTES------FTV-KSTLEEHTQWITDVRFSPSLSRLATSSAD 618
D +L +G DK ++W F + L H +++D+ S +SS D
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675
+T+R+WD + + F GH + V S+ F P +L S EI+ W+I G C
Sbjct: 98 KTLRLWDLRTGT-TYKRFVGHQSEVYSVAFSPDNRQIL-SAGAEREIKLWNI-LGEC 151
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 14/156 (8%)
Query: 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625
D +++ TG D +W + + +TL H + + +RF+ + + T S DR++ VWD
Sbjct: 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM--MVTCSKDRSIAVWD 239
Query: 626 TENP-DYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-- 681
+P D +L R GH V +DF + + S + I+ W N +C V
Sbjct: 240 MASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVW--NTSTCEFVRTLNG 294
Query: 682 -QSGATQMRFQPRLGRILAAAIENYISILDVETQVC 716
+ G ++++ RL +++ + +N I + D+E C
Sbjct: 295 HKRGIACLQYRDRL--VVSGSSDNTIRLWDIECGAC 328
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 12/154 (7%)
Query: 562 HFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 618
H + ++ T D+ +W S T++ L H + V F + ++S D
Sbjct: 218 HLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY--IVSASGD 275
Query: 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV 678
RT++VW+T ++ +RT GH + L + ++ L+ S +++ IR W I G+C V
Sbjct: 276 RTIKVWNTSTCEF-VRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRV 331
Query: 679 FKCQSGATQ-MRFQPRLGRILAAAIENYISILDV 711
+ + +RF + RI++ A + I + D+
Sbjct: 332 LEGHEELVRCIRFDNK--RIVSGAYDGKIKVWDL 363
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 10/89 (11%)
Query: 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD-- 625
+L+ +G D LW E LE H + + +RF R+ + + D ++VWD
Sbjct: 307 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSGAYDGKIKVWDLV 364
Query: 626 -TENP-----DYSLRTFTGHSTTVMSLDF 648
+P LRT HS V L F
Sbjct: 365 AALDPRAPAGTLCLRTLVEHSGRVFRLQF 393
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
+T + IP +S V +C ++P G +A GG D ++ ++ V L HT
Sbjct: 96 YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 155
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
+++ RF +++ TSS D T +WD E TFTGH+ VMSL P L S
Sbjct: 156 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR-LFVS 212
Query: 659 CDNNSEIRYWSINNGSCAGVF 679
++ + W + G C F
Sbjct: 213 GACDASAKLWDVREGMCRQTF 233
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S +PD +L +G D A LW + T H I + F P+ + AT
Sbjct: 195 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 254
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTT--VMSLDFHPSKEDLL 656
S D T R++D D L T++ + + S+ F S LL
Sbjct: 255 GSDDATCRLFDLR-ADQELMTYSHDNIICGITSVSFSKSGRLLL 297
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/168 (19%), Positives = 68/168 (40%), Gaps = 10/168 (5%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLA 613
+K+ + H+ D +LL + D K ++W +S+T + + W+ ++PS + +A
Sbjct: 67 AKIYAMHWGTDSRLLVSASQDGKLIIW--DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 124
Query: 614 TSSADRTVRVWDTENPDYSLRT---FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
D +++ + + ++R GH+ + F + + S D + W I
Sbjct: 125 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL--WDI 182
Query: 671 NNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCR 717
G F +G + P ++ A + + DV +CR
Sbjct: 183 ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 230
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 16/138 (11%)
Query: 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFS 606
L+ A T++V F+P + +LATG DK LW + +K T E H I V +S
Sbjct: 269 HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS 328
Query: 607 P-SLSRLATSSADRTVRVWD-------------TENPDYSLRTFTGHSTTVMSLDFHPSK 652
P + + LA+S DR + VWD + P L GH+ + ++P++
Sbjct: 329 PHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNE 388
Query: 653 EDLLCSCDNNSEIRYWSI 670
++CS ++ ++ W +
Sbjct: 389 PWVICSVSEDNIMQIWQM 406
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 569 LLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624
L + D+K ++W T S T ++ HT + + F+P S LAT SAD+TV +W
Sbjct: 244 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
D N L TF H + + + P E +L S + + W +
Sbjct: 304 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
+T + IP +S V +C ++P G +A GG D ++ ++ V L HT
Sbjct: 85 YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
+++ RF +++ TSS D T +WD E TFTGH+ VMSL P L S
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR-LFVS 201
Query: 659 CDNNSEIRYWSINNGSCAGVF 679
++ + W + G C F
Sbjct: 202 GACDASAKLWDVREGMCRQTF 222
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S +PD +L +G D A LW + T H I + F P+ + AT
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTT--VMSLDFHPSKEDLL 656
S D T R++D D L T++ + + S+ F S LL
Sbjct: 244 GSDDATCRLFDLR-ADQELMTYSHDNIICGITSVSFSKSGRLLL 286
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 32/168 (19%), Positives = 68/168 (40%), Gaps = 10/168 (5%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLA 613
+K+ + H+ D +LL + D K ++W +S+T + + W+ ++PS + +A
Sbjct: 56 AKIYAMHWGTDSRLLLSASQDGKLIIW--DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 614 TSSADRTVRVWDTENPDYSLRT---FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
D +++ + + ++R GH+ + F + + S D + W I
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL--WDI 171
Query: 671 NNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCR 717
G F +G + P ++ A + + DV +CR
Sbjct: 172 ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
+T + IP +S V +C ++P G +A GG D ++ ++ V L HT
Sbjct: 85 YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
+++ RF +++ TSS D T +WD E TFTGH+ VMSL P L S
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR-LFVS 201
Query: 659 CDNNSEIRYWSINNGSCAGVF 679
++ + W + G C F
Sbjct: 202 GACDASAKLWDVREGMCRQTF 222
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S +PD +L +G D A LW + T H I + F P+ + AT
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTT--VMSLDFHPSKEDLL 656
S D T R++D D L T++ + + S+ F S LL
Sbjct: 244 GSDDATCRLFDLR-ADQELMTYSHDNIICGITSVSFSKSGRLLL 286
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 32/168 (19%), Positives = 68/168 (40%), Gaps = 10/168 (5%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLA 613
+K+ + H+ D +LL + D K ++W +S+T + + W+ ++PS + +A
Sbjct: 56 AKIYAMHWGTDSRLLVSASQDGKLIIW--DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 614 TSSADRTVRVWDTENPDYSLRT---FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
D +++ + + ++R GH+ + F + + S D + W I
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL--WDI 171
Query: 671 NNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCR 717
G F +G + P ++ A + + DV +CR
Sbjct: 172 ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
+T + IP +S V +C ++P G +A GG D ++ ++ V L HT
Sbjct: 85 YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
+++ RF +++ TSS D T +WD E TFTGH+ VMSL P L S
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR-LFVS 201
Query: 659 CDNNSEIRYWSINNGSCAGVF 679
++ + W + G C F
Sbjct: 202 GACDASAKLWDVREGMCRQTF 222
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S +PD +L +G D A LW + T H I + F P+ + AT
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTT--VMSLDFHPSKEDLL 656
S D T R++D D L T++ + + S+ F S LL
Sbjct: 244 GSDDATCRLFDLR-ADQELMTYSHDNIICGITSVSFSKSGRLLL 286
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 32/168 (19%), Positives = 68/168 (40%), Gaps = 10/168 (5%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLA 613
+K+ + H+ D +LL + D K ++W +S+T + + W+ ++PS + +A
Sbjct: 56 AKIYAMHWGTDSRLLLSASQDGKLIIW--DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 614 TSSADRTVRVWDTENPDYSLRT---FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
D +++ + + ++R GH+ + F + + S D + W I
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL--WDI 171
Query: 671 NNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCR 717
G F +G + P ++ A + + DV +CR
Sbjct: 172 ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
+T + IP +S V +C ++P G +A GG D ++ ++ V L HT
Sbjct: 85 YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
+++ RF +++ TSS D T +WD E TFTGH+ VMSL P L S
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR-LFVS 201
Query: 659 CDNNSEIRYWSINNGSCAGVF 679
++ + W + G C F
Sbjct: 202 GACDASAKLWDVREGMCRQTF 222
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S +PD +L +G D A LW + T H I + F P+ + AT
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTT--VMSLDFHPSKEDLL 656
S D T R++D D L T++ + + S+ F S LL
Sbjct: 244 GSDDATCRLFDLR-ADQELMTYSHDNIICGITSVSFSKSGRLLL 286
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/168 (19%), Positives = 68/168 (40%), Gaps = 10/168 (5%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLA 613
+K+ + H+ D +LL + D K ++W +S+T + + W+ ++PS + +A
Sbjct: 56 AKIYAMHWGTDSRLLVSASQDGKLIIW--DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 614 TSSADRTVRVWDTENPDYSLRT---FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
D +++ + + ++R GH+ + F + + S D + W I
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL--WDI 171
Query: 671 NNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCR 717
G F +G + P ++ A + + DV +CR
Sbjct: 172 ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
+ A T++V F+P + +LATG DK LW + +K + E H I V++SP
Sbjct: 277 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 336
Query: 608 SLSRLATSSADRTVRVWD---------TEN----PDYSLRTFTGHSTTVMSLDFHPSKED 654
+ + LA+S DR + VWD TE+ P L GH+ + ++P++
Sbjct: 337 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 396
Query: 655 LLCSCDNNSEIRYWSI 670
++CS ++ ++ W +
Sbjct: 397 IICSVSEDNIMQVWQM 412
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 569 LLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624
L + D+K ++W T + T++ HT + + F+P S LAT SAD+TV +W
Sbjct: 250 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 309
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
D N L +F H + + + P E +L S + + W +
Sbjct: 310 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTENPDYSL--RTFTGHSTTVMSL 646
K+ HT + DV + L S AD + + +WDT N + S T H+ V L
Sbjct: 228 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 287
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINN 672
F+P E +L + + + W + N
Sbjct: 288 SFNPYSEFILATGSADKTVALWDLRN 313
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 16/136 (11%)
Query: 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFS 606
L+ A T++V F+P + +LATG DK LW + +K T E H I V +S
Sbjct: 269 HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS 328
Query: 607 P-SLSRLATSSADRTVRVWD-------------TENPDYSLRTFTGHSTTVMSLDFHPSK 652
P + + LA+S DR + VWD + P L GH+ + ++P++
Sbjct: 329 PHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNE 388
Query: 653 EDLLCSCDNNSEIRYW 668
++CS ++ + W
Sbjct: 389 PWVICSVSEDNIXQIW 404
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 569 LLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624
L + D+K +W T S T ++ HT + + F+P S LAT SAD+TV +W
Sbjct: 244 LFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
D N L TF H + + + P E +L S + + W +
Sbjct: 304 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
+ A T++V F+P + +LATG DK LW + +K + E H I V++SP
Sbjct: 275 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 334
Query: 608 SLSRLATSSADRTVRVWD---------TEN----PDYSLRTFTGHSTTVMSLDFHPSKED 654
+ + LA+S DR + VWD TE+ P L GH+ + ++P++
Sbjct: 335 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 394
Query: 655 LLCSCDNNSEIRYWSI 670
++CS ++ ++ W +
Sbjct: 395 IICSVSEDNIMQVWQM 410
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 569 LLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624
L + D+K ++W T + T++ HT + + F+P S LAT SAD+TV +W
Sbjct: 248 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 307
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
D N L +F H + + + P E +L S + + W +
Sbjct: 308 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTENPDYSL--RTFTGHSTTVMSL 646
K+ HT + DV + L S AD + + +WDT N + S T H+ V L
Sbjct: 226 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 285
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINN 672
F+P E +L + + + W + N
Sbjct: 286 SFNPYSEFILATGSADKTVALWDLRN 311
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 12/167 (7%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE---SFTVKSTLEEHTQWITDVRFSPSLSR 611
T V S FS D + + +G DK LW T +TV+ E H++W++ VRFSP+ S
Sbjct: 128 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSCVRFSPNSSN 185
Query: 612 --LATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
+ + D+ V+VW+ N L+T GH+ + ++ P L S + + W
Sbjct: 186 PIIVSCGWDKLVKVWNLANC--KLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLW 242
Query: 669 SINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV 715
+N G + F P L AA I I D+E ++
Sbjct: 243 DLNEGKHLYTLDGGDIINALCFSPNR-YWLCAATGPSIKIWDLEGKI 288
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
S DG+ +G D LW + T HT+ + V FS ++ + S D+T++
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 153
Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDNNSEIRYWSINN 672
+W+T HS V + F P S ++ SC + ++ W++ N
Sbjct: 154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 204
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 17/165 (10%)
Query: 565 PDGKLLATGGHDKKAVLWC-----TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619
PD ++ + DK ++W T + L H+ +++DV S + S D
Sbjct: 51 PD--MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108
Query: 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
T+R+WD + R F GH+ V+S+ F ++ S + I+ W+ G C
Sbjct: 109 TLRLWDLTTGT-TTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDKTIKLWN-TLGVCKYTV 165
Query: 680 KCQS---GATQMRFQPRLGR--ILAAAIENYISILDVETQVCRLK 719
+ +S + +RF P I++ + + + ++ C+LK
Sbjct: 166 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN--CKLK 208
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 6/137 (4%)
Query: 558 VESCHFSPDGK--LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
V FSP+ ++ + G DK +W + +K+ HT ++ V SP S A+
Sbjct: 174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG 233
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675
D +WD N L T G + +L F P++ LC+ S I+ W +
Sbjct: 234 GKDGQAMLWDL-NEGKHLYTLDG-GDIINALCFSPNRY-WLCAATGPS-IKIWDLEGKII 289
Query: 676 AGVFKCQSGATQMRFQP 692
K + +T + +P
Sbjct: 290 VDELKQEVISTSSKAEP 306
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
+ A T++V F+P + +LATG DK LW + +K + E H I V++SP
Sbjct: 273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 332
Query: 608 SLSRLATSSADRTVRVWD---------TEN----PDYSLRTFTGHSTTVMSLDFHPSKED 654
+ + LA+S DR + VWD TE+ P L GH+ + ++P++
Sbjct: 333 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 392
Query: 655 LLCSCDNNSEIRYWSI 670
++CS ++ ++ W +
Sbjct: 393 IICSVSEDNIMQVWQM 408
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 569 LLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624
L + D+K ++W T + T++ HT + + F+P S LAT SAD+TV +W
Sbjct: 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 305
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
D N L +F H + + + P E +L S + + W +
Sbjct: 306 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTENPDYSL--RTFTGHSTTVMSL 646
K+ HT + DV + L S AD + + +WDT N + S T H+ V L
Sbjct: 224 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 283
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINN 672
F+P E +L + + + W + N
Sbjct: 284 SFNPYSEFILATGSADKTVALWDLRN 309
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 12/167 (7%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE---SFTVKSTLEEHTQWITDVRFSPSLSR 611
T V S FS D + + +G DK LW T +TV+ E H++W++ VRFSP+ S
Sbjct: 105 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSCVRFSPNSSN 162
Query: 612 --LATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
+ + D+ V+VW+ N L+T GH+ + ++ P L S + + W
Sbjct: 163 PIIVSCGWDKLVKVWNLAN--CKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLW 219
Query: 669 SINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV 715
+N G + F P L AA I I D+E ++
Sbjct: 220 DLNEGKHLYTLDGGDIINALCFSPNR-YWLCAATGPSIKIWDLEGKI 265
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
S DG+ +G D LW + T HT+ + V FS ++ + S D+T++
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 130
Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDNNSEIRYWSINN 672
+W+T HS V + F P S ++ SC + ++ W++ N
Sbjct: 131 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 17/165 (10%)
Query: 565 PDGKLLATGGHDKKAVLWC-----TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619
PD ++ + DK ++W T + L H+ +++DV S + S D
Sbjct: 28 PD--MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 85
Query: 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
T+R+WD + R F GH+ V+S+ F ++ S + I+ W+ G C
Sbjct: 86 TLRLWDLTTGT-TTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDKTIKLWN-TLGVCKYTV 142
Query: 680 KCQS---GATQMRFQPRLGR--ILAAAIENYISILDVETQVCRLK 719
+ +S + +RF P I++ + + + ++ C+LK
Sbjct: 143 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN--CKLK 185
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 6/137 (4%)
Query: 558 VESCHFSPDGK--LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
V FSP+ ++ + G DK +W + +K+ HT ++ V SP S A+
Sbjct: 151 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG 210
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675
D +WD N L T G + +L F P++ LC+ S I+ W +
Sbjct: 211 GKDGQAMLWDL-NEGKHLYTLDG-GDIINALCFSPNRY-WLCAATGPS-IKIWDLEGKII 266
Query: 676 AGVFKCQSGATQMRFQP 692
K + +T + +P
Sbjct: 267 VDELKQEVISTSSKAEP 283
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
+ A T++V F+P + +LATG DK LW + +K + E H I V++SP
Sbjct: 269 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 328
Query: 608 SLSRLATSSADRTVRVWD-------------TENPDYSLRTFTGHSTTVMSLDFHPSKED 654
+ + LA+S DR + VWD + P L GH+ + ++P++
Sbjct: 329 NETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 388
Query: 655 LLCSCDNNSEIRYWSI 670
++CS ++ ++ W +
Sbjct: 389 VICSVSEDNIMQVWQM 404
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 569 LLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624
L + D+K ++W T S +++ HT + + F+P S LAT SAD+TV +W
Sbjct: 242 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 301
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
D N L +F H + + + P E +L S + + W +
Sbjct: 302 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTENPDYSL--RTFTGHSTTVMSL 646
K+ HT + DV + L S AD + + +WDT + + S + H+ V L
Sbjct: 220 KTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCL 279
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINN 672
F+P E +L + + + W + N
Sbjct: 280 SFNPYSEFILATGSADKTVALWDLRN 305
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVMSLD 647
+TL H+Q + +R++P LA+ D V VW + E L+TFT H V ++
Sbjct: 235 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 294
Query: 648 FHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILA 699
+ P + ++L + S+ IR W++ +G+C S + + P +++
Sbjct: 295 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELIS 348
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 11/121 (9%)
Query: 545 FTEFQLIPASTSKVESC--HFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQ 598
E + S E C ++PDG+ LA+GG+D +W + + T +H
Sbjct: 229 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 288
Query: 599 WITDVRFSPSLSR-LAT--SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655
+ V + P S LAT ++DR +R+W+ + L HS V S+ + P ++L
Sbjct: 289 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLSAVDAHS-QVCSILWSPHYKEL 346
Query: 656 L 656
+
Sbjct: 347 I 347
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 556 SKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 613
S+V S +SP K L +G + V+W + + L+ HT + + SP + +A
Sbjct: 332 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 391
Query: 614 TSSADRTVRVW 624
+++AD T+R+W
Sbjct: 392 SAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVMSLD 647
+TL H+Q + +R++P LA+ D V VW + E L+TFT H V ++
Sbjct: 224 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 283
Query: 648 FHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILA 699
+ P + ++L + S+ IR W++ +G+C S + + P +++
Sbjct: 284 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELIS 337
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 11/121 (9%)
Query: 545 FTEFQLIPASTSKVESC--HFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQ 598
E + S E C ++PDG+ LA+GG+D +W + + T +H
Sbjct: 218 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 277
Query: 599 WITDVRFSPSLSR-LAT--SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655
+ V + P S LAT ++DR +R+W+ + L HS V S+ + P ++L
Sbjct: 278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLSAVDAHS-QVCSILWSPHYKEL 335
Query: 656 L 656
+
Sbjct: 336 I 336
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 556 SKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 613
S+V S +SP K L +G + V+W + + L+ HT + + SP + +A
Sbjct: 321 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 380
Query: 614 TSSADRTVRVW 624
+++AD T+R+W
Sbjct: 381 SAAADETLRLW 391
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVMSLD 647
+TL H+Q + +R++P LA+ D V VW + E L+TFT H V ++
Sbjct: 144 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 203
Query: 648 FHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILA 699
+ P + ++L + S+ IR W++ +G+C S + + P +++
Sbjct: 204 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELIS 257
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 11/121 (9%)
Query: 545 FTEFQLIPASTSKVESC--HFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQ 598
E + S E C ++PDG+ LA+GG+D +W + + T +H
Sbjct: 138 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 197
Query: 599 WITDVRFSPSLSR-LAT--SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655
+ V + P S LAT ++DR +R+W+ + L HS V S+ + P ++L
Sbjct: 198 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLSAVDAHS-QVCSILWSPHYKEL 255
Query: 656 L 656
+
Sbjct: 256 I 256
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 556 SKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 613
S+V S +SP K L +G + V+W + + L+ HT + + SP + +A
Sbjct: 241 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 300
Query: 614 TSSADRTVRVW 624
+++AD T+R+W
Sbjct: 301 SAAADETLRLW 311
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 564 SPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSPSL---SRLATSS 616
+ + + TGG D +W +++ ++STLE H+ W+ DV +SP++ S LA+ S
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226
Query: 617 ADRTVRVWDTEN 628
DRT +W +N
Sbjct: 227 QDRTCIIWTQDN 238
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
H + I D RLAT S+D+T+++++ E + L T TGH V +D+ HP
Sbjct: 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNGSCAGV 678
+L SC + ++ W NG + +
Sbjct: 68 TILASCSYDGKVLIWKEENGRWSQI 92
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
Query: 564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623
S G ++ +G +D ++W L HT I + R ++S D T+R+
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 336
Query: 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
WD EN + + T GH+ V L + L S + IR W N+ S
Sbjct: 337 WDLENGEL-MYTLQGHTALVGLLRL---SDKFLVSAAADGSIRGWDANDYS 383
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 78/167 (46%), Gaps = 15/167 (8%)
Query: 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 609
++ T ++ S + + K + D +W E+ + TL+ HT + +R S
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKF 364
Query: 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
L +++AD ++R WD DYS R F+ H T + ++ +++L S N + ++
Sbjct: 365 --LVSAAADGSIRGWDAN--DYS-RKFSYHHTNLSAITTFYVSDNILVSGSEN-QFNIYN 418
Query: 670 INNGSC--AGVFKCQSGATQMRFQPRLGRILAAAIE----NYISILD 710
+ +G A + K + F+ G+ L AA+E +++ ILD
Sbjct: 419 LRSGKLVHANILKDADQIWSVNFK---GKTLVAAVEKDGQSFLEILD 462
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 590 KSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648
++TL H T IT ++F + + T + D+ +RV+D+ N + L+ +GH V +L +
Sbjct: 114 RTTLRGHMTSVITCLQFEDNY--VITGADDKMIRVYDSINKKFLLQ-LSGHDGGVWALKY 170
Query: 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
+ +L S + +R W I G C VF+
Sbjct: 171 --AHGGILVSGSTDRTVRVWDIKKGCCTHVFE 200
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
L + S DRTVRVWD + + F GH++TV LD K
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCT-HVFEGHNSTVRCLDIVEYK 215
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 65/128 (50%), Gaps = 12/128 (9%)
Query: 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
LE H+ +++DV S + + ++S D ++R+W+ +N + F GH+ V+S+ F P
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYK-FLGHTKDVLSVAFSPDN 121
Query: 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-----TQMRFQPRLGR--ILAAAIENY 705
++ +N+ +R W++ G C GA + +RF P L I++ +N
Sbjct: 122 RQIVSGGRDNA-LRVWNV-KGECMHTL--SRGAHTDWVSCVRFSPSLDAPVIVSGGWDNL 177
Query: 706 ISILDVET 713
+ + D+ T
Sbjct: 178 VKVWDLAT 185
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 553 ASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
A T V FSP D ++ +GG D +W + + + L+ HT ++T V SP S
Sbjct: 150 AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGS 209
Query: 611 RLATSSADRTVRVWD 625
A+S D R+WD
Sbjct: 210 LCASSDKDGVARLWD 224
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 1/112 (0%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
S +G + D LW ++ + HT+ + V FSP ++ + D +R
Sbjct: 75 LSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALR 134
Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNG 673
VW+ + + H+ V + F PS + ++ S ++ ++ W + G
Sbjct: 135 VWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATG 186
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
H + I D RLAT S+D+T+++++ E + L T TGH V +D+ HP
Sbjct: 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 69
Query: 654 DLLCSCDNNSEIRYWSINNG 673
+L SC + ++ W NG
Sbjct: 70 TILASCSYDGKVLIWKEENG 89
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSP 607
PA+ + + + + + TGG D +W +++ ++STLE H+ W+ DV +SP
Sbjct: 157 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 216
Query: 608 SL---SRLATSSADRTVRVWDTEN 628
++ S LA+ S DRT +W +N
Sbjct: 217 TVLLRSYLASVSQDRTCIIWTQDN 240
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
H + I D RLAT S+D+T+++++ E + L T TGH V +D+ HP
Sbjct: 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNG 673
+L SC + ++ W NG
Sbjct: 68 TILASCSYDGKVLIWKEENG 87
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSP 607
PA+ + + + + + TGG D +W +++ ++STLE H+ W+ DV +SP
Sbjct: 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 608 SL---SRLATSSADRTVRVWDTEN 628
++ S LA+ S DRT +W +N
Sbjct: 215 TVLLRSYLASVSQDRTCIIWTQDN 238
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 76/189 (40%), Gaps = 4/189 (2%)
Query: 537 AEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH 596
E+ T E + I + + V + F + G D + ++ + E H
Sbjct: 37 VEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96
Query: 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656
+I + P+ + + S D TV++W+ EN +TF GH VM + F+P
Sbjct: 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156
Query: 657 CSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGR--ILAAAIENYISILDVE 712
S + ++ WS+ + + G + + P + ++ A+ + I I D +
Sbjct: 157 ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216
Query: 713 TQVCRLKLQ 721
T+ C L+
Sbjct: 217 TKSCVATLE 225
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
PD + T D +W ++ + +TLE H ++ F P+L + + S D T+++W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 625 DT 626
++
Sbjct: 256 NS 257
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
H + I D R+AT S+D+T+++++ E + L T TGH V +D+ HP
Sbjct: 8 HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNG 673
+L SC + ++ W NG
Sbjct: 68 TILASCSYDGKVMIWKEENG 87
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSP 607
PA+ + + + + + TGG D +W +++ ++STLE H+ W+ DV +SP
Sbjct: 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 608 SL---SRLATSSADRTVRVWDTEN 628
++ S +A+ S DRT +W +N
Sbjct: 215 TVLLRSYMASVSQDRTCIIWTQDN 238
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 74/182 (40%), Gaps = 4/182 (2%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
T E + I + + V + F + G D + ++ + E H +I +
Sbjct: 44 TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI 103
Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
P+ + + S D TV++W+ EN +TF GH VM + F+P S +
Sbjct: 104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163
Query: 664 EIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGR--ILAAAIENYISILDVETQVCRLK 719
++ WS+ + + G + + P + ++ A+ + I I D +T+ C
Sbjct: 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT 223
Query: 720 LQ 721
L+
Sbjct: 224 LE 225
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
PD + T D +W ++ + +TLE H ++ F P+L + + S D T+++W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 625 DT 626
++
Sbjct: 256 NS 257
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Query: 564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623
S G ++ +G +D ++W L HT I + R ++S D T+R+
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRI 336
Query: 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
WD EN + T GH+ V L + L S + IR W N+ S
Sbjct: 337 WDLENGELXY-TLQGHTALVGLLRL---SDKFLVSAAADGSIRGWDANDYS 383
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 78/167 (46%), Gaps = 15/167 (8%)
Query: 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 609
++ T ++ S + + K + D +W E+ + TL+ HT + +R S
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKF 364
Query: 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
L +++AD ++R WD DYS R F+ H T + ++ +++L S N + ++
Sbjct: 365 --LVSAAADGSIRGWDAN--DYS-RKFSYHHTNLSAITTFYVSDNILVSGSEN-QFNIYN 418
Query: 670 INNGSC--AGVFKCQSGATQMRFQPRLGRILAAAIE----NYISILD 710
+ +G A + K + F+ G+ L AA+E +++ ILD
Sbjct: 419 LRSGKLVHANILKDADQIWSVNFK---GKTLVAAVEKDGQSFLEILD 462
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 590 KSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648
++TL H T IT ++F + + T + D+ +RV+D+ N + L+ +GH V +L +
Sbjct: 114 RTTLRGHXTSVITCLQFEDNY--VITGADDKXIRVYDSINKKFLLQ-LSGHDGGVWALKY 170
Query: 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
+ +L S + +R W I G C VF+
Sbjct: 171 --AHGGILVSGSTDRTVRVWDIKKGCCTHVFE 200
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
L + S DRTVRVWD + + F GH++TV LD K
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCT-HVFEGHNSTVRCLDIVEYK 215
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 4/133 (3%)
Query: 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
E H +I + P+ + + S D TV++W+ EN +TF GH VM + F+P
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGR--ILAAAIENYISI 708
S + ++ WS+ + + G + + P + ++ A+ + I I
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 709 LDVETQVCRLKLQ 721
D +T+ C L+
Sbjct: 213 WDYQTKSCVATLE 225
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
PD + T D +W ++ + +TLE H ++ F P+L + + S D T+++W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 625 DT 626
++
Sbjct: 256 NS 257
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 4/133 (3%)
Query: 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
E H +I + P+ + + S D TV++W+ EN +TF GH VM + F+P
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGR--ILAAAIENYISI 708
S + ++ WS+ + + G + + P + ++ A+ + I I
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 709 LDVETQVCRLKLQ 721
D +T+ C L+
Sbjct: 213 WDYQTKSCVATLE 225
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
PD + T D +W ++ + +TLE H ++ F P+L + + S D T+++W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 625 DT 626
++
Sbjct: 256 NS 257
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Query: 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
L H + +T V+++ L + S D + VW + N + L T GH+ T+ S+D
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE-RLGTLDGHTGTIWSIDVDCFT 86
Query: 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY------I 706
+ + + S I+ W ++NG C +K ++ F P G A ++N I
Sbjct: 87 KYCVTGSADYS-IKLWDVSNGQCVATWKSPVPVKRVEFSP-CGNYFLAILDNVMKNPGSI 144
Query: 707 SILDVE 712
+I ++E
Sbjct: 145 NIYEIE 150
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
++ +G LL + D A +W + + TL+ HT I + T SAD +++
Sbjct: 40 YNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK 99
Query: 623 VWDTEN 628
+WD N
Sbjct: 100 LWDVSN 105
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 563 FSPDGKLLATGGHDKKAVLW-CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 618
+S GK + G D K + + ++ +++ H + I+D++FSP L+ TSS D
Sbjct: 183 WSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD 239
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSP 607
PA+ + + + + + TGG D +W +++ ++STLE H+ W+ DV +SP
Sbjct: 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 608 SL---SRLATSSADRTVRVWDTEN 628
++ S A+ S DRT +W +N
Sbjct: 215 TVLLRSYXASVSQDRTCIIWTQDN 238
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
H + I D R AT S+D+T+++++ E + L T TGH V +D+ HP
Sbjct: 8 HNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNG 673
+L SC + ++ W NG
Sbjct: 68 TILASCSYDGKVXIWKEENG 87
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSP 607
T V S ++PDG L A+ G D VL+ T E+ H+ + + +SP
Sbjct: 190 TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 249
Query: 608 SLSRLATSSADRTVRVWD 625
+++A++SAD+T+++W+
Sbjct: 250 DGTKIASASADKTIKIWN 267
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 558 VESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS 616
+ S F P + +G D ++ F KST EHT+++ VR++P S A++
Sbjct: 150 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG 209
Query: 617 ADRTVRVWDTEN-------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
D T+ +++ + D SL+ HS +V L + P + S + I+ W+
Sbjct: 210 GDGTIVLYNGVDGTKTGVFEDDSLKN-VAHSGSVFGLTWSPDGTK-IASASADKTIKIWN 267
Query: 670 I 670
+
Sbjct: 268 V 268
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 7/120 (5%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLW-CTESFTVKST--LEEHTQWITDVRFSPSLSRL 612
+++ S FS +G L +K + + +F + T HT + V +SP RL
Sbjct: 492 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 551
Query: 613 ATSSADRTVRVWDTENP-DYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
AT S D +V VW+ P D+ + H+ ++V S+ + E + S +S I++W++
Sbjct: 552 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW--LNETTIVSAGQDSNIKFWNV 609
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 12/125 (9%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSL- 609
V C F+P+G+ +A GG D ++ S V L H + + ++ P
Sbjct: 111 VMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE 170
Query: 610 SRLATSSADRTVRVWDTENPD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665
+RL T S D+T +WD + +GH+ V+SL + ++ S ++ +
Sbjct: 171 TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTV 230
Query: 666 RYWSI 670
R W +
Sbjct: 231 RLWDL 235
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 560 SCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRF-SPSLSRL 612
SC + PD + L TG D+ VLW + S HT + + S + +
Sbjct: 162 SCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMF 221
Query: 613 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP 650
+ S D TVR+WD ++RT+ GH + S+ F P
Sbjct: 222 ISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP 259
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/131 (18%), Positives = 53/131 (40%), Gaps = 6/131 (4%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
+ KV S ++P+ + + D + ++W + ++ H W+ + F+P+ +A
Sbjct: 66 SGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVAC 125
Query: 615 SSADRTVRVWDTE---NPDYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
D +++ + D ++ R TGH S + P +E L + + W
Sbjct: 126 GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLW 185
Query: 669 SINNGSCAGVF 679
+ G +F
Sbjct: 186 DVTTGQRISIF 196
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 558 VESCHFSPDG--KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
V FSP+ + + DK +W + ++STL HT +++ V SP S A+
Sbjct: 520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASG 579
Query: 616 SADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673
D V +WD YSL ++ + +L F P++ LC+ + I+ W + +
Sbjct: 580 GKDGVVLLWDLAEGKKLYSLEA----NSVIHALCFSPNRY-WLCAATEHG-IKIWDLESK 633
Query: 674 S 674
S
Sbjct: 634 S 634
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
VE S DG+ +G D + LW + HT+ + V FS ++ ++S
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR 492
Query: 618 DRTVRVWDTENP-DYSL-RTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINN 672
DRT+++W+T Y++ GH V + F P+ + + S + ++ W+++N
Sbjct: 493 DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN 550
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V + SPDG L A+GG D +LW +LE ++ I + FSP+ L
Sbjct: 561 TGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV-IHALCFSPNRYWLCA 619
Query: 615 SSADRTVRVWDTEN 628
++ + +++WD E+
Sbjct: 620 AT-EHGIKIWDLES 632
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 5/132 (3%)
Query: 595 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654
EH ++ V S ++ + S D ++VWD L ++ H+ V + P K+
Sbjct: 125 EHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ-QVVLSSYRAHAAQVTCVAASPHKDS 183
Query: 655 LLCSCDNNSEIRYWSINNGSCAGVFKCQSGA---TQMRFQPRLGRILAAAIEN-YISILD 710
+ SC ++ I W A C + T + + P+ + EN +S++D
Sbjct: 184 VFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVD 243
Query: 711 VETQVCRLKLQV 722
++ C L V
Sbjct: 244 TKSTSCVLSSAV 255
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVW---DTENPDYSLRTFTGHSTTVMSLDFHP 650
+ H IT ++F PS L +SS D +++W D NP RT GH TV +
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP----RTLIGHRATVTDIAIID 191
Query: 651 SKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
++L S + IR W G+ F
Sbjct: 192 RGRNVL-SASLDGTIRLWECGTGTTIHTF 219
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%)
Query: 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL 612
A S++ F P G+ L + D + +W + + TL H +TD+ +
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 196
Query: 613 ATSSADRTVRVWD 625
++S D T+R+W+
Sbjct: 197 LSASLDGTIRLWE 209
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVW---DTENPDYSLRTFTGHSTTVMSLDFHP 650
+ H IT ++F PS L +SS D +++W D NP RT GH TV +
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP----RTLIGHRATVTDIAIID 188
Query: 651 SKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
++L S + IR W G+ F
Sbjct: 189 RGRNVL-SASLDGTIRLWECGTGTTIHTF 216
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%)
Query: 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL 612
A S++ F P G+ L + D + +W + + TL H +TD+ +
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 193
Query: 613 ATSSADRTVRVWD 625
++S D T+R+W+
Sbjct: 194 LSASLDGTIRLWE 206
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 6/130 (4%)
Query: 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQW 599
G + + + +V ++PD + T G D+ A +W + T K TL +
Sbjct: 39 GNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA 98
Query: 600 ITDVRFSPSLSRLATSSADRTVRV--WDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLL 656
VR++P+ + A S R + + ++ EN + + +TV+SLD+HP+ L
Sbjct: 99 ARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158
Query: 657 C-SCDNNSEI 665
SCD I
Sbjct: 159 AGSCDFKCRI 168
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRT 620
++PD + T G D+ A +W + T K TL + VR++P+ + A S R
Sbjct: 60 WAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRV 119
Query: 621 VRV--WDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLC-SCDNNSEI 665
+ + ++ EN + + +TV+SLD+HP+ L SCD I
Sbjct: 120 ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI 168
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDF-HPSKE 653
H I D + +RLAT S+DR+V+++D N L GH V + + HP
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG 71
Query: 654 DLLCSCDNNSEIRYWSINNGS 674
++L SC + ++ W NG+
Sbjct: 72 NILASCSYDRKVIIWREENGT 92
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 568 KLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSL----SRLATSSADRT 620
K A+GG D LW E + + LE H+ W+ DV ++PS+ S +A+ S D
Sbjct: 180 KRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR 239
Query: 621 VRVWDTEN 628
V +W ++
Sbjct: 240 VFIWTCDD 247
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 596 HTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLR--------TFTGHSTTVMSL 646
HT + D+ + P + + +A+ S D TV VW E PD L T GH+ V +
Sbjct: 80 HTAPVLDIAWXPHNDNVIASGSEDCTVMVW--EIPDGGLVLPLREPVITLEGHTKRVGIV 137
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+HP+ +++L S ++ I W + G+
Sbjct: 138 AWHPTAQNVLLSAGXDNVILVWDVGTGA 165
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 27/128 (21%)
Query: 561 CHFSPDGKLLA-----TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLAT 614
C S G L TG DK L C HT + D+ + P + + +A+
Sbjct: 51 CEASGGGAFLVLPLGKTGRVDKNVPLVCG-----------HTAPVLDIAWCPHNDNVIAS 99
Query: 615 SSADRTVRVWDTENPDYSLR--------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
S D TV VW E PD L T GH+ V + +HP+ +++L S ++ I
Sbjct: 100 GSEDCTVMVW--EIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVIL 157
Query: 667 YWSINNGS 674
W + G+
Sbjct: 158 VWDVGTGA 165
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 15/141 (10%)
Query: 541 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 597
K + +FQ+ S + + SPDG L+A+ G D + +LW + TL
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
Query: 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLR-TFTGHSTT----VMSLDFH 649
+ + + FSP+ LA ++A ++V+ + P Y LR F G+S +SL +
Sbjct: 239 E-VFSLAFSPNRYWLAAATA-TGIKVFSLD-PQYLVDDLRPEFAGYSAAAEPHAVSLAWS 295
Query: 650 PSKEDLLCSCDNNSEIRYWSI 670
+ L +N IR W +
Sbjct: 296 ADGQTLFAGYTDNV-IRVWQV 315
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V+ C + DG + DK LW + H + V S + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-----LLCSCDNNSEIRYWSIN 671
D+T++VW + L T GH+ V + P+++ + S N+ ++ W++N
Sbjct: 128 DKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 55/156 (35%), Gaps = 50/156 (32%)
Query: 585 ESFTVKSTLEEHTQWITDVRFS---PSL-------------------------------- 609
E ++ TLE H W+T + S P+L
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGH 64
Query: 610 -------------SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656
+ ++S D+T+R+WD + R F GH + VMS+D K ++
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQR-FVGHKSDVMSVDIDK-KASMI 122
Query: 657 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP 692
S + I+ W+I A + +Q+R P
Sbjct: 123 ISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVP 158
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V+ C + DG + DK LW + H + V S + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSR 127
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-----LLCSCDNNSEIRYWSIN 671
D+T++VW + L T GH+ V + P+++ + S N+ ++ W++N
Sbjct: 128 DKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLN 184
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 15/141 (10%)
Query: 541 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 597
K + +FQ+ S + + SPDG L+A+ G D + LW + TL
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQD 238
Query: 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLR-TFTGHSTT----VMSLDFH 649
+ + + FSP+ LA ++A ++V+ + P Y LR F G+S +SL +
Sbjct: 239 E-VFSLAFSPNRYWLAAATA-TGIKVFSLD-PQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295
Query: 650 PSKEDLLCSCDNNSEIRYWSI 670
+ L +N IR W +
Sbjct: 296 ADGQTLFAGYTDNV-IRVWQV 315
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 57/138 (41%), Gaps = 11/138 (7%)
Query: 585 ESFTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFT 637
E ++ TLE H W+T + S P+L L ++S D+T+ W D + +R+F
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGR 696
GHS V L S + +R W + G F +S + +
Sbjct: 63 GHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASX 121
Query: 697 ILAAAIENYISILDVETQ 714
I++ + + I + ++ Q
Sbjct: 122 IISGSRDKTIKVWTIKGQ 139
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 70/193 (36%), Gaps = 46/193 (23%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF-SPSLSRLATSSADR 619
C S ++ +G DK A +W S L+ H + D + S S ++ T+SAD+
Sbjct: 108 CSLSFQDGVVISGSWDKTAKVWKEGSLVYN--LQAHNASVWDAKVVSFSENKFLTASADK 165
Query: 620 TVRVW----------------------------------------DTENPDYSLRTFTGH 639
T+++W D D LRT+ GH
Sbjct: 166 TIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDV-LRTYEGH 224
Query: 640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILA 699
+ V + P+ + + SC + +R WS NGS V + + G I+
Sbjct: 225 ESFVYCIKLLPNGD--IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIV 282
Query: 700 AAIENYISILDVE 712
+ +N + I E
Sbjct: 283 GSSDNLVRIFSQE 295
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V+ C + DG + DK LW + H + V S + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-----LLCSCDNNSEIRYWSIN 671
D+T++VW + L T GH+ V + P+++ + S N+ ++ W++N
Sbjct: 128 DKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 15/141 (10%)
Query: 541 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 597
K + +FQ+ S + + SPDG L+A+ G D + +LW + TL
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
Query: 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLR-TFTGHSTT----VMSLDFH 649
+ + + FSP+ LA ++A ++V+ + P Y LR F G+S +SL +
Sbjct: 239 E-VFSLAFSPNRYWLAAATA-TGIKVFSLD-PQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295
Query: 650 PSKEDLLCSCDNNSEIRYWSI 670
+ L +N IR W +
Sbjct: 296 ADGQTLFAGYTDNV-IRVWQV 315
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 55/156 (35%), Gaps = 50/156 (32%)
Query: 585 ESFTVKSTLEEHTQWITDVRFS---PSL-------------------------------- 609
E ++ TLE H W+T + S P+L
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGH 64
Query: 610 -------------SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656
+ ++S D+T+R+WD + R F GH + VMS+D K ++
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQR-FVGHKSDVMSVDI-DKKASMI 122
Query: 657 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP 692
S + I+ W+I A + +Q+R P
Sbjct: 123 ISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVP 158
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V+ C + DG + DK LW + H + V S + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-----LLCSCDNNSEIRYWSIN 671
D+T++VW + L T GH+ V + P+++ + S N+ ++ W++N
Sbjct: 128 DKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 15/139 (10%)
Query: 541 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 597
K + +FQ+ S + + SPDG L+A+ G D + +LW + TL
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
Query: 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLR-TFTGHSTT----VMSLDFH 649
+ + + FSP+ LA ++A ++V+ + P Y LR F G+S +SL +
Sbjct: 239 E-VFSLAFSPNRYWLAAATA-TGIKVFSLD-PQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295
Query: 650 PSKEDLLCSCDNNSEIRYW 668
+ L +N IR W
Sbjct: 296 ADGQTLFAGYTDNV-IRVW 313
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 55/156 (35%), Gaps = 50/156 (32%)
Query: 585 ESFTVKSTLEEHTQWITDVRFS---PSL-------------------------------- 609
E ++ TLE H W+T + S P+L
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGH 64
Query: 610 -------------SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656
+ ++S D+T+R+WD + R F GH + VMS+D K ++
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQR-FVGHKSDVMSVDI-DKKASMI 122
Query: 657 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP 692
S + I+ W+I A + +Q+R P
Sbjct: 123 ISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVP 158
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V+ C + DG + DK LW + H + V S + + S
Sbjct: 62 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 121
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-----LLCSCDNNSEIRYWSIN 671
D+T++VW + L T GH+ V + P+++ + S N+ ++ W++N
Sbjct: 122 DKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 178
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 15/141 (10%)
Query: 541 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 597
K + +FQ+ S + + SPDG L+A+ G D + +LW + TL
Sbjct: 173 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 232
Query: 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLR-TFTGHSTT----VMSLDFH 649
+ + + FSP+ LA ++A ++V+ + +P Y LR F G+S +SL +
Sbjct: 233 E-VFSLAFSPNRYWLAAATA-TGIKVF-SLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS 289
Query: 650 PSKEDLLCSCDNNSEIRYWSI 670
+ L +N IR W +
Sbjct: 290 ADGQTLFAGYTDNV-IRVWQV 309
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 50/154 (32%)
Query: 587 FTVKSTLEEHTQWITDVRFS---PSL---------------------------------- 609
++ TLE H W+T + S P+L
Sbjct: 1 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 60
Query: 610 -----------SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
+ ++S D+T+R+WD + R F GH + VMS+D K ++ S
Sbjct: 61 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQR-FVGHKSDVMSVDI-DKKASMIIS 118
Query: 659 CDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP 692
+ I+ W+I A + +Q+R P
Sbjct: 119 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVP 152
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V+ C + DG + DK LW + H + V S + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-----LLCSCDNNSEIRYWSIN 671
D+T++VW + L T GH+ V + P+++ + S N+ ++ W++N
Sbjct: 128 DKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 15/141 (10%)
Query: 541 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 597
K + +FQ+ S + + SPDG L+A+ G D + +LW + TL
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
Query: 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLR-TFTGHSTT----VMSLDFH 649
+ + + FSP+ LA ++A ++V+ + P Y LR F G+S +SL +
Sbjct: 239 E-VFSLAFSPNRYWLAAATA-TGIKVFSLD-PQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295
Query: 650 PSKEDLLCSCDNNSEIRYWSI 670
+ L +N IR W +
Sbjct: 296 ADGQTLFAGYTDNV-IRVWQV 315
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 55/156 (35%), Gaps = 50/156 (32%)
Query: 585 ESFTVKSTLEEHTQWITDVRFS---PSL-------------------------------- 609
E ++ TLE H W+T + S P+L
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGH 64
Query: 610 -------------SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656
+ ++S D+T+R+WD + R F GH + VMS+D K ++
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQR-FVGHKSDVMSVDI-DKKASMI 122
Query: 657 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP 692
S + I+ W+I A + +Q+R P
Sbjct: 123 ISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVP 158
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 18/93 (19%)
Query: 593 LEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD---- 647
L H + +T V +P LAT+S D+TV++WD LR G ++ + SL
Sbjct: 247 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWD-------LRQVRGKASFLYSLPHRHP 299
Query: 648 -----FHPSKEDLLCSCDNNSEIRYWSINNGSC 675
F P LL + D SEIR +S + C
Sbjct: 300 VNAACFSPDGARLL-TTDQKSEIRVYSASQWDC 331
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 7/118 (5%)
Query: 598 QWITDVRFSPSLS-RLATSSA---DRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSK 652
Q ++ V + P S R+AT++ D ++ +WD N + L+T GH ++SLD+
Sbjct: 215 QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQD 274
Query: 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILA-AAIENYISI 708
E LL S ++ + W+ + F + + +F P + A A+ +N I +
Sbjct: 275 EHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEV 332
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
+ N S+ F+ HS++V ++ F+ ++++L S NN EI W +N
Sbjct: 98 EANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADR 619
CH D LL + G D +LW ES S W +F+P L A +S D
Sbjct: 271 CH--QDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDN 328
Query: 620 TVRV 623
+ V
Sbjct: 329 KIEV 332
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 18/93 (19%)
Query: 593 LEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD---- 647
L H + +T V +P LAT+S D+TV++WD LR G ++ + SL
Sbjct: 246 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWD-------LRQVRGKASFLYSLPHRHP 298
Query: 648 -----FHPSKEDLLCSCDNNSEIRYWSINNGSC 675
F P LL + D SEIR +S + C
Sbjct: 299 VNAACFSPDGARLL-TTDQKSEIRVYSASQWDC 330
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 18/93 (19%)
Query: 593 LEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD---- 647
L H + +T V +P LAT+S D+TV++WD LR G ++ + SL
Sbjct: 246 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWD-------LRQVRGKASFLYSLPHRHP 298
Query: 648 -----FHPSKEDLLCSCDNNSEIRYWSINNGSC 675
F P LL + D SEIR +S + C
Sbjct: 299 VNAACFSPDGARLL-TTDQKSEIRVYSASQWDC 330
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 45/118 (38%), Gaps = 4/118 (3%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATS 615
+ SC PDG L GG +W + T +K+ L + SP +
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673
+D + VWD N +R F GH+ +D L +N+ +R W + G
Sbjct: 160 CSDGNIAVWDLHNQTL-VRQFQGHTDGASCIDISNDGTKLWTGGLDNT-VRSWDLREG 215
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 555 TSKVESCH---FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 611
TS +C+ SPD K+ + D +W + T+ + HT + + S ++
Sbjct: 138 TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK 197
Query: 612 LATSSADRTVRVWDT-ENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655
L T D TVR WD E FT + + SL + P+ E L
Sbjct: 198 LWTGGLDNTVRSWDLREGRQLQQHDFT---SQIFSLGYCPTGEWL 239
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659
I+ + F+ + L ++S D T+R+W N + S F GHS +++S + +D + SC
Sbjct: 250 ISVLEFNDTNKLLLSASDDGTLRIWHGGNGN-SQNCFYGHSQSIVSASW--VGDDKVISC 306
Query: 660 DNNSEIRYWSI 670
+ +R WS+
Sbjct: 307 SMDGSVRLWSL 317
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 55/135 (40%), Gaps = 20/135 (14%)
Query: 558 VESCHFSPDGK---LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LA 613
V S H SP L+A G K L +S + L+ H Q I V +SP LA
Sbjct: 144 VYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILA 203
Query: 614 TSSADRTVRVWDTENPDYSLRTF---------------TGHSTTVMSLDFHPSKEDLLCS 658
T+SAD V++WD L T T H+ V L F LL +
Sbjct: 204 TASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLL-T 262
Query: 659 CDNNSEIRYWSINNG 673
++ +R W+ +NG
Sbjct: 263 VGTDNRMRLWNSSNG 277
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 79/169 (46%), Gaps = 30/169 (17%)
Query: 566 DGKLLATGGHDKKAVLWCTES------FTVKSTL-------EEHTQWITDVRFSPSLSRL 612
+G+ + +GG D VL+ E+ +T K+ + H + V++ P + +
Sbjct: 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114
Query: 613 ATSSA-DRTVRVWDTENPDYSLRT--FTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRY 667
TSS+ D+T++VWDT +L+T TV S P +K L+ +++
Sbjct: 115 FTSSSFDKTLKVWDTN----TLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQL 170
Query: 668 WSINNGSCAGVFKCQSGATQ----MRFQPRLGRILA-AAIENYISILDV 711
+ +GSC+ + + G Q + + PR ILA A+ ++ + + DV
Sbjct: 171 CDLKSGSCSHILQ---GHRQEILAVSWSPRYDYILATASADSRVKLWDV 216
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 55/113 (48%), Gaps = 10/113 (8%)
Query: 612 LATSSADRTVRVWD---TENPDYSLRTFTGHST----TVMSLDFHPSKEDLLCSCDNNSE 664
+ T S D TV+VWD ++P ++ G + TV + + +E ++C+ +N +
Sbjct: 132 IVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGD 191
Query: 665 IRYWSINNGSCAGVFKCQSGATQMRFQPR---LGRILAAAIENYISILDVETQ 714
I+ + + N + ++G + F + + +++A ++E + D+ TQ
Sbjct: 192 IKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ 244
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 2/109 (1%)
Query: 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVW 624
DG +GG D +W V + H+ + V P + S D + +W
Sbjct: 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209
Query: 625 DTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672
DT P + R F T S+ +HP K+D D + +I N
Sbjct: 210 DTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN 258
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 596 HTQWITDVRFSPSLSRL-ATSSADRTVRVWDTEN--PDYSLRTFTGHSTTVMSLDFHPSK 652
H +T F+P L ATSS D TV++WD N S H V + F+P+
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262
Query: 653 EDLLCSCDNNSEIRYWS 669
L + D +EIR +S
Sbjct: 263 STKLLTTDQRNEIRVYS 279
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 596 HTQWITDVRFSPSLSRL-ATSSADRTVRVWDTEN--PDYSLRTFTGHSTTVMSLDFHPSK 652
H +T F+P L ATSS D TV++WD N S H V + F+P+
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 261
Query: 653 EDLLCSCDNNSEIRYWS 669
L + D +EIR +S
Sbjct: 262 STKLLTTDQRNEIRVYS 278
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
++ + GH + L FHP +LL S + +R W+I + +F
Sbjct: 143 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 190
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
++ + GH + L FHP +LL S + +R W+I + +F
Sbjct: 102 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 149
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
++ + GH + L FHP +LL S + +R W+I + +F
Sbjct: 107 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 154
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
++ + GH + L FHP +LL S + +R W+I + +F
Sbjct: 106 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 153
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
++ + GH + L FHP +LL S + +R W+I + +F
Sbjct: 106 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 153
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 24/57 (42%)
Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
+AT D + +WD + H + + FHPS + L +C + + +W
Sbjct: 252 VATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHW 308
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--PDYSLRTFTGHSTTVMSLDFH 649
TL+ H+ + + + +LA+ D V++WD + P + T T H+ V ++ +
Sbjct: 212 TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKF---TKTNHNAAVKAVAWC 268
Query: 650 PSKEDLLCSCDN--NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILA 699
P + +LL + + +I +W+ G+ S T + + P I++
Sbjct: 269 PWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMS 320
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 14/156 (8%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
+S+V + DG LA+GG+D +W S K T H + V + P S L
Sbjct: 217 SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLA 276
Query: 615 S---SADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSC---DNNSEIRY 667
+ + D+ + W N R T + + V SL + P ++++ + DNN I
Sbjct: 277 TGGGTMDKQIHFW---NAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSI-- 331
Query: 668 WSINNGSCAGVFKCQSGATQMRFQPRL--GRILAAA 701
WS ++ + T++ + GRIL+ A
Sbjct: 332 WSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTA 367
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 556 SKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---SR 611
S V FSPD G+ + T G D+K + +S +E+ + + F+ S +
Sbjct: 207 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK 266
Query: 612 LATSSADRTVRVWDT 626
AT AD T+RVWD
Sbjct: 267 FATVGADATIRVWDV 281
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 556 SKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---SR 611
S V FSPD G+ + T G D+K + +S +E+ + + F+ S +
Sbjct: 207 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK 266
Query: 612 LATSSADRTVRVWDT 626
AT AD T+RVWD
Sbjct: 267 FATVGADATIRVWDV 281
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 16/86 (18%)
Query: 600 ITDVRFSPSLSRLAT---SSADRTVRVWDTEN---------PDYSLRTFTG---HSTTVM 644
I V+FSP S LA S++ + +++TE P +S + G HS+ VM
Sbjct: 246 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 305
Query: 645 SLDFHPSKEDLLCSCDNNSEIRYWSI 670
SL F+ S E LCS + ++R+W +
Sbjct: 306 SLSFNDSGE-TLCSAGWDGKLRFWDV 330
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 18/94 (19%)
Query: 554 STSKVESCHFSPDGKLLATGGHDKKAV----LWCTE------SFTV-----KSTLEE--H 596
+++ + S FSP G LLA HD + L+ TE S +V +++L E H
Sbjct: 242 NSNSIRSVKFSPQGSLLAIA-HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH 300
Query: 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630
+ W+ + F+ S L ++ D +R WD + +
Sbjct: 301 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE 334
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 16/86 (18%)
Query: 600 ITDVRFSPSLSRLAT---SSADRTVRVWDTEN---------PDYSLRTFTG---HSTTVM 644
I V+FSP S LA S++ + +++TE P +S + G HS+ VM
Sbjct: 236 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 295
Query: 645 SLDFHPSKEDLLCSCDNNSEIRYWSI 670
SL F+ S E LCS + ++R+W +
Sbjct: 296 SLSFNDSGET-LCSAGWDGKLRFWDV 320
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 18/94 (19%)
Query: 554 STSKVESCHFSPDGKLLATGGHDKKAV----LWCTE------SFTV-----KSTLEE--H 596
+++ + S FSP G LLA HD + L+ TE S +V +++L E H
Sbjct: 232 NSNSIRSVKFSPQGSLLAIA-HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH 290
Query: 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630
+ W+ + F+ S L ++ D +R WD + +
Sbjct: 291 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE 324
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 15/68 (22%)
Query: 601 TDVRFSPSLSRLATSSADRTVRV---------WDTENPDYSLRTFTGHSTTVMSLDFHPS 651
T VR+SP+ + A S R + V W +++ LR+ T++SLD+HP+
Sbjct: 104 TFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS------TILSLDWHPN 157
Query: 652 KEDLLCSC 659
L C
Sbjct: 158 NVLLAAGC 165
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 549 QLIPAS----TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR 604
Q IP + T V +S DG + T DK A +W S + +H + +
Sbjct: 76 QTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS-NQAIQIAQHDAPVKTIH 134
Query: 605 F--SPSLSRLATSSADRTVRVWDT 626
+ +P+ S + T S D+T++ WDT
Sbjct: 135 WIKAPNYSCVMTGSWDKTLKFWDT 158
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 563 FSPD---GKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
FSP G L G W + T+ + HT + DV +S S++ T+S
Sbjct: 47 FSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106
Query: 618 DRTVRVWD 625
D+T ++WD
Sbjct: 107 DKTAKMWD 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,947,199
Number of Sequences: 62578
Number of extensions: 646069
Number of successful extensions: 1687
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1016
Number of HSP's gapped (non-prelim): 390
length of query: 725
length of database: 14,973,337
effective HSP length: 106
effective length of query: 619
effective length of database: 8,340,069
effective search space: 5162502711
effective search space used: 5162502711
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)