Query 004885
Match_columns 725
No_of_seqs 668 out of 3908
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 14:31:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004885.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004885hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0272 U4/U6 small nuclear ri 100.0 2.6E-32 5.6E-37 285.9 17.4 215 475-725 171-388 (459)
2 KOG0272 U4/U6 small nuclear ri 100.0 5.9E-31 1.3E-35 275.7 14.9 218 474-725 212-431 (459)
3 KOG0263 Transcription initiati 100.0 3.8E-29 8.2E-34 279.5 20.7 226 498-725 382-620 (707)
4 KOG0271 Notchless-like WD40 re 100.0 3.4E-29 7.4E-34 259.4 18.8 211 477-724 113-409 (480)
5 KOG0263 Transcription initiati 100.0 9E-29 2E-33 276.5 20.2 204 475-714 447-651 (707)
6 KOG0279 G protein beta subunit 100.0 1.1E-27 2.3E-32 240.4 22.2 226 473-721 29-271 (315)
7 KOG0286 G-protein beta subunit 100.0 4E-27 8.6E-32 237.4 26.0 207 503-725 106-316 (343)
8 KOG0266 WD40 repeat-containing 100.0 8.7E-27 1.9E-31 263.4 27.6 216 476-725 156-377 (456)
9 KOG0271 Notchless-like WD40 re 100.0 2.1E-27 4.5E-32 246.2 18.4 228 478-725 156-452 (480)
10 KOG0273 Beta-transducin family 99.9 1.8E-26 3.9E-31 244.8 22.4 210 479-724 235-494 (524)
11 KOG0279 G protein beta subunit 99.9 5.5E-26 1.2E-30 228.1 23.8 201 507-723 29-233 (315)
12 KOG0295 WD40 repeat-containing 99.9 9E-26 1.9E-30 233.3 22.1 230 477-724 106-376 (406)
13 KOG0315 G-protein beta subunit 99.9 2.1E-25 4.5E-30 220.7 22.5 177 546-724 74-300 (311)
14 KOG0286 G-protein beta subunit 99.9 9.7E-25 2.1E-29 220.3 25.0 213 473-721 49-268 (343)
15 KOG0266 WD40 repeat-containing 99.9 9.9E-25 2.1E-29 246.7 26.4 214 476-723 200-420 (456)
16 KOG0284 Polyadenylation factor 99.9 1.8E-26 4E-31 241.1 11.2 208 480-724 97-306 (464)
17 KOG0316 Conserved WD40 repeat- 99.9 6.8E-25 1.5E-29 215.5 18.6 210 478-725 16-226 (307)
18 KOG0273 Beta-transducin family 99.9 2.3E-24 5E-29 228.9 23.9 220 476-712 273-523 (524)
19 PTZ00421 coronin; Provisional 99.9 2.8E-23 6E-28 235.5 32.6 221 474-722 70-300 (493)
20 KOG0285 Pleiotropic regulator 99.9 6.4E-25 1.4E-29 226.1 16.6 201 503-725 160-361 (460)
21 KOG0285 Pleiotropic regulator 99.9 1.5E-24 3.3E-29 223.4 17.7 181 542-724 138-319 (460)
22 KOG0319 WD40-repeat-containing 99.9 1.4E-24 3.1E-29 240.7 18.0 205 504-725 375-590 (775)
23 KOG0265 U5 snRNP-specific prot 99.9 9.1E-24 2E-28 214.0 21.7 212 477-724 45-262 (338)
24 KOG0291 WD40-repeat-containing 99.9 2.3E-23 4.9E-28 231.1 25.5 213 476-724 347-562 (893)
25 KOG0284 Polyadenylation factor 99.9 4.6E-25 1E-29 230.7 11.3 213 472-721 131-346 (464)
26 KOG0281 Beta-TrCP (transducin 99.9 3E-25 6.5E-30 227.5 9.4 189 508-724 209-400 (499)
27 KOG0276 Vesicle coat complex C 99.9 4.3E-24 9.2E-29 232.6 18.2 201 499-719 60-264 (794)
28 KOG0645 WD40 repeat protein [G 99.9 1E-22 2.2E-27 204.0 25.9 202 481-713 16-226 (312)
29 KOG0275 Conserved WD40 repeat- 99.9 1.3E-24 2.9E-29 220.9 12.6 216 481-724 215-479 (508)
30 KOG0640 mRNA cleavage stimulat 99.9 7.6E-24 1.6E-28 214.8 17.3 230 475-723 108-346 (430)
31 KOG0319 WD40-repeat-containing 99.9 1.2E-23 2.7E-28 233.2 19.8 229 473-713 378-620 (775)
32 KOG0283 WD40 repeat-containing 99.9 1.5E-23 3.2E-28 236.7 20.6 229 477-725 265-545 (712)
33 KOG0265 U5 snRNP-specific prot 99.9 1.2E-23 2.6E-28 213.2 17.7 179 546-725 38-217 (338)
34 KOG0276 Vesicle coat complex C 99.9 1.6E-23 3.5E-28 228.2 19.3 214 478-725 12-228 (794)
35 cd00200 WD40 WD40 domain, foun 99.9 3.4E-22 7.3E-27 204.0 28.2 212 477-724 7-219 (289)
36 KOG0645 WD40 repeat protein [G 99.9 1.6E-22 3.5E-27 202.5 23.7 200 476-713 58-262 (312)
37 KOG0295 WD40 repeat-containing 99.9 1E-22 2.2E-27 210.8 21.8 203 474-712 188-406 (406)
38 cd00200 WD40 WD40 domain, foun 99.9 1.5E-21 3.3E-26 199.2 28.9 197 507-724 64-261 (289)
39 KOG0282 mRNA splicing factor [ 99.9 1.9E-23 4.1E-28 222.8 14.8 198 506-724 227-474 (503)
40 PTZ00421 coronin; Provisional 99.9 1.5E-21 3.3E-26 221.3 29.4 170 549-720 69-254 (493)
41 PLN00181 protein SPA1-RELATED; 99.9 2.4E-21 5.2E-26 233.7 31.8 218 478-725 482-709 (793)
42 PTZ00420 coronin; Provisional 99.9 1.8E-21 3.9E-26 222.3 28.1 173 546-721 65-258 (568)
43 KOG0310 Conserved WD40 repeat- 99.9 5.4E-22 1.2E-26 212.1 21.9 197 503-721 77-277 (487)
44 KOG0318 WD40 repeat stress pro 99.9 2E-21 4.4E-26 208.8 25.5 229 476-724 56-363 (603)
45 KOG0292 Vesicle coat complex C 99.9 7.2E-22 1.6E-26 221.8 22.2 211 476-721 48-289 (1202)
46 KOG0277 Peroxisomal targeting 99.9 1.9E-22 4.2E-27 200.2 15.6 201 504-723 71-277 (311)
47 KOG0291 WD40-repeat-containing 99.9 1.4E-21 3E-26 217.0 24.0 186 508-714 321-510 (893)
48 KOG0296 Angio-associated migra 99.9 1.5E-21 3.3E-26 202.3 21.2 215 474-724 101-368 (399)
49 PTZ00420 coronin; Provisional 99.9 2.4E-20 5.1E-25 213.2 32.4 212 476-715 71-296 (568)
50 KOG0313 Microtubule binding pr 99.9 3.1E-21 6.6E-26 200.8 21.6 208 502-712 201-418 (423)
51 KOG0318 WD40 repeat stress pro 99.9 1.6E-20 3.4E-25 202.0 26.8 214 475-723 186-572 (603)
52 KOG0274 Cdc4 and related F-box 99.9 3.1E-21 6.8E-26 219.5 22.6 194 506-725 218-414 (537)
53 PLN00181 protein SPA1-RELATED; 99.9 2.8E-20 6.1E-25 224.4 31.2 190 506-717 545-743 (793)
54 KOG0277 Peroxisomal targeting 99.9 7.1E-22 1.5E-26 196.3 14.1 186 507-711 118-308 (311)
55 KOG0281 Beta-TrCP (transducin 99.9 1.2E-22 2.6E-27 208.5 8.0 213 473-714 208-430 (499)
56 KOG0973 Histone transcription 99.9 8.6E-21 1.9E-25 219.1 23.7 225 474-714 64-357 (942)
57 KOG0292 Vesicle coat complex C 99.9 3.3E-21 7.2E-26 216.5 19.1 210 479-724 9-250 (1202)
58 KOG0643 Translation initiation 99.9 4.6E-20 9.9E-25 184.6 25.2 214 473-722 4-230 (327)
59 KOG0283 WD40 repeat-containing 99.9 2.5E-21 5.4E-26 218.8 17.9 172 547-721 258-490 (712)
60 KOG0274 Cdc4 and related F-box 99.9 8.9E-21 1.9E-25 215.9 22.5 190 505-722 260-451 (537)
61 KOG0308 Conserved WD40 repeat- 99.9 1.7E-21 3.7E-26 213.7 15.1 207 504-724 35-255 (735)
62 KOG0973 Histone transcription 99.9 1.2E-20 2.7E-25 217.8 21.7 220 482-725 16-266 (942)
63 KOG0264 Nucleosome remodeling 99.9 9.3E-21 2E-25 201.4 18.9 193 508-712 192-404 (422)
64 KOG0305 Anaphase promoting com 99.9 1.7E-20 3.6E-25 207.3 20.9 210 479-725 217-432 (484)
65 KOG1446 Histone H3 (Lys4) meth 99.9 2.3E-19 5E-24 183.7 27.4 224 478-722 13-272 (311)
66 KOG0275 Conserved WD40 repeat- 99.9 3.5E-22 7.6E-27 203.3 6.3 168 553-722 211-388 (508)
67 KOG0267 Microtubule severing p 99.9 4.7E-22 1E-26 220.1 7.8 197 504-721 38-235 (825)
68 KOG0293 WD40 repeat-containing 99.9 1.2E-20 2.6E-25 197.8 17.6 218 473-724 218-437 (519)
69 KOG0282 mRNA splicing factor [ 99.8 1.4E-21 3.1E-26 208.6 9.7 172 545-718 204-378 (503)
70 KOG0647 mRNA export protein (c 99.8 6.8E-20 1.5E-24 186.1 21.3 216 473-722 21-291 (347)
71 KOG0296 Angio-associated migra 99.8 1.1E-19 2.4E-24 188.5 22.0 175 546-722 55-230 (399)
72 KOG0313 Microtubule binding pr 99.8 7.4E-20 1.6E-24 190.5 20.3 198 506-725 115-346 (423)
73 KOG0289 mRNA splicing factor [ 99.8 1.6E-19 3.4E-24 190.6 22.6 230 474-724 233-476 (506)
74 KOG0315 G-protein beta subunit 99.8 7.5E-20 1.6E-24 181.5 19.0 197 506-725 10-216 (311)
75 KOG0306 WD40-repeat-containing 99.8 6.8E-20 1.5E-24 203.7 20.8 204 502-714 462-666 (888)
76 KOG0289 mRNA splicing factor [ 99.8 7.3E-20 1.6E-24 193.1 19.8 194 507-721 232-428 (506)
77 KOG0269 WD40 repeat-containing 99.8 1.3E-20 2.9E-25 210.1 14.9 202 506-724 100-309 (839)
78 KOG0316 Conserved WD40 repeat- 99.8 5.9E-20 1.3E-24 180.9 16.9 174 546-723 8-184 (307)
79 KOG4283 Transcription-coupled 99.8 1.3E-19 2.8E-24 183.2 19.6 205 505-715 55-279 (397)
80 KOG0299 U3 snoRNP-associated p 99.8 9E-20 2E-24 193.9 18.8 226 477-722 140-366 (479)
81 KOG0310 Conserved WD40 repeat- 99.8 3.2E-19 6.9E-24 191.0 23.0 184 507-712 124-309 (487)
82 KOG0641 WD40 repeat protein [G 99.8 1.8E-18 3.9E-23 169.2 24.7 228 476-725 29-274 (350)
83 KOG0772 Uncharacterized conser 99.8 1E-19 2.2E-24 195.2 17.5 215 478-722 166-405 (641)
84 KOG1407 WD40 repeat protein [F 99.8 3.2E-19 6.9E-24 178.1 19.7 210 479-722 20-271 (313)
85 KOG0288 WD40 repeat protein Ti 99.8 8.9E-20 1.9E-24 191.6 16.5 195 505-724 230-429 (459)
86 KOG0264 Nucleosome remodeling 99.8 1.8E-19 3.8E-24 191.8 19.0 198 507-713 138-348 (422)
87 KOG0300 WD40 repeat-containing 99.8 3.3E-19 7.1E-24 181.5 18.6 211 502-714 198-430 (481)
88 KOG0278 Serine/threonine kinas 99.8 3.6E-20 7.8E-25 183.6 11.0 217 471-721 6-222 (334)
89 KOG0306 WD40-repeat-containing 99.8 4.7E-19 1E-23 197.1 20.3 177 546-725 445-635 (888)
90 KOG0278 Serine/threonine kinas 99.8 3.3E-19 7.2E-24 176.8 15.8 205 473-715 94-300 (334)
91 KOG0294 WD40 repeat-containing 99.8 2E-18 4.3E-23 176.4 20.2 196 506-725 53-250 (362)
92 KOG0640 mRNA cleavage stimulat 99.8 2.1E-19 4.5E-24 182.7 12.8 173 547-721 104-300 (430)
93 KOG0301 Phospholipase A2-activ 99.8 1E-18 2.2E-23 193.4 19.1 182 509-721 74-256 (745)
94 KOG1274 WD40 repeat protein [G 99.8 8E-18 1.7E-22 191.3 25.2 221 476-713 10-263 (933)
95 KOG0308 Conserved WD40 repeat- 99.8 2.3E-18 4.9E-23 189.3 20.1 222 474-714 39-287 (735)
96 KOG0643 Translation initiation 99.8 7.9E-18 1.7E-22 168.7 21.2 173 550-724 5-190 (327)
97 KOG0301 Phospholipase A2-activ 99.8 3.2E-18 6.9E-23 189.4 20.3 208 475-713 74-289 (745)
98 KOG0772 Uncharacterized conser 99.8 1.1E-18 2.4E-23 187.3 16.1 203 478-710 267-485 (641)
99 KOG0293 WD40 repeat-containing 99.8 7.1E-19 1.5E-23 184.5 14.3 176 542-720 211-392 (519)
100 KOG0302 Ribosome Assembly prot 99.8 3.5E-18 7.6E-23 177.9 18.6 202 508-713 167-379 (440)
101 KOG0270 WD40 repeat-containing 99.8 2E-18 4.2E-23 183.1 16.8 210 503-713 189-405 (463)
102 KOG0641 WD40 repeat protein [G 99.8 2.5E-17 5.4E-22 161.3 22.5 204 478-713 88-304 (350)
103 KOG0299 U3 snoRNP-associated p 99.8 5.5E-18 1.2E-22 180.4 19.0 200 477-714 200-412 (479)
104 KOG0646 WD40 repeat protein [G 99.8 4.9E-18 1.1E-22 181.1 18.6 194 506-721 93-316 (476)
105 KOG0288 WD40 repeat protein Ti 99.8 1.1E-18 2.4E-23 183.3 12.2 211 475-722 171-381 (459)
106 KOG1407 WD40 repeat protein [F 99.8 2.5E-17 5.4E-22 164.7 20.7 222 474-711 59-310 (313)
107 KOG0267 Microtubule severing p 99.8 4.2E-19 9.2E-24 196.9 8.7 180 503-703 79-259 (825)
108 KOG0300 WD40 repeat-containing 99.8 7.1E-18 1.5E-22 171.9 15.2 194 505-720 159-395 (481)
109 KOG1332 Vesicle coat complex C 99.8 6.4E-18 1.4E-22 167.5 14.1 198 499-712 16-241 (299)
110 KOG0269 WD40 repeat-containing 99.8 5.4E-18 1.2E-22 189.5 15.0 207 474-713 128-341 (839)
111 KOG4328 WD40 protein [Function 99.8 1.3E-17 2.7E-22 177.5 16.9 215 470-712 177-399 (498)
112 KOG0294 WD40 repeat-containing 99.8 2.6E-17 5.7E-22 168.2 18.3 195 509-715 4-200 (362)
113 KOG1332 Vesicle coat complex C 99.8 1.3E-17 2.8E-22 165.3 15.2 189 505-712 69-286 (299)
114 KOG1273 WD40 repeat protein [G 99.8 3E-17 6.5E-22 167.6 17.9 207 482-725 26-293 (405)
115 KOG1408 WD40 repeat protein [F 99.7 4.1E-17 8.9E-22 180.2 18.5 171 553-724 457-683 (1080)
116 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 1.4E-15 3.1E-20 159.8 29.5 194 508-723 87-290 (300)
117 KOG0305 Anaphase promoting com 99.7 5.5E-17 1.2E-21 179.5 18.3 191 508-721 190-385 (484)
118 KOG0642 Cell-cycle nuclear pro 99.7 4.4E-17 9.5E-22 177.3 16.6 210 503-724 303-573 (577)
119 KOG0302 Ribosome Assembly prot 99.7 1E-16 2.2E-21 167.1 18.6 183 509-709 227-435 (440)
120 KOG1036 Mitotic spindle checkp 99.7 2.5E-16 5.3E-21 161.0 20.4 207 474-722 8-272 (323)
121 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 1.6E-15 3.5E-20 159.4 27.2 191 507-721 2-196 (300)
122 KOG4378 Nuclear protein COP1 [ 99.7 1.1E-16 2.5E-21 171.1 18.4 230 476-725 51-294 (673)
123 KOG4283 Transcription-coupled 99.7 5.6E-16 1.2E-20 157.1 21.3 210 477-723 99-334 (397)
124 KOG1446 Histone H3 (Lys4) meth 99.7 8.1E-16 1.8E-20 157.9 22.3 177 546-724 5-229 (311)
125 KOG0647 mRNA export protein (c 99.7 2.3E-16 4.9E-21 160.7 17.4 158 553-714 25-186 (347)
126 KOG1408 WD40 repeat protein [F 99.7 1.2E-16 2.7E-21 176.5 16.3 190 503-713 468-714 (1080)
127 KOG0639 Transducin-like enhanc 99.7 7.9E-17 1.7E-21 172.4 14.4 191 506-713 431-623 (705)
128 KOG0270 WD40 repeat-containing 99.7 2.3E-16 5.1E-21 167.5 17.5 193 506-717 256-454 (463)
129 KOG0268 Sof1-like rRNA process 99.7 4E-17 8.7E-22 169.3 11.1 209 486-724 63-272 (433)
130 KOG0268 Sof1-like rRNA process 99.7 1.2E-16 2.6E-21 165.8 14.1 237 474-715 81-348 (433)
131 KOG2445 Nuclear pore complex c 99.7 4.4E-15 9.5E-20 151.7 24.8 201 505-721 24-330 (361)
132 KOG0303 Actin-binding protein 99.7 1.6E-15 3.4E-20 159.0 21.6 213 474-715 76-297 (472)
133 KOG1539 WD repeat protein [Gen 99.7 1.4E-15 3E-20 171.6 21.0 193 502-713 456-649 (910)
134 KOG0639 Transducin-like enhanc 99.7 2.7E-16 5.9E-21 168.4 14.1 199 503-721 474-672 (705)
135 KOG1273 WD40 repeat protein [G 99.7 7.6E-16 1.7E-20 157.4 16.5 161 558-721 26-192 (405)
136 KOG0646 WD40 repeat protein [G 99.7 1.2E-15 2.6E-20 163.0 18.1 193 474-693 118-330 (476)
137 KOG0303 Actin-binding protein 99.7 3.9E-16 8.5E-21 163.5 14.1 163 547-713 73-250 (472)
138 KOG2048 WD40 repeat protein [G 99.7 5.8E-15 1.3E-19 163.7 24.0 218 482-725 18-246 (691)
139 KOG0307 Vesicle coat complex C 99.7 1.9E-16 4.2E-21 184.1 12.7 222 476-722 61-294 (1049)
140 KOG2055 WD40 repeat protein [G 99.7 5.1E-15 1.1E-19 157.9 20.7 208 471-713 205-418 (514)
141 KOG0321 WD40 repeat-containing 99.7 1.8E-15 3.9E-20 166.5 17.0 207 503-723 61-314 (720)
142 KOG0307 Vesicle coat complex C 99.7 5.6E-16 1.2E-20 180.3 13.1 191 507-714 130-329 (1049)
143 KOG2096 WD40 repeat protein [G 99.6 5.7E-15 1.2E-19 151.2 18.6 229 474-720 81-368 (420)
144 KOG2096 WD40 repeat protein [G 99.6 4.4E-15 9.5E-20 152.0 16.9 162 548-712 79-308 (420)
145 KOG1009 Chromatin assembly com 99.6 1.7E-14 3.7E-19 152.0 21.4 131 508-649 28-174 (434)
146 KOG1034 Transcriptional repres 99.6 6.6E-15 1.4E-19 151.5 17.5 188 506-713 105-384 (385)
147 KOG1274 WD40 repeat protein [G 99.6 2.8E-14 6.1E-19 162.7 20.1 180 503-706 105-294 (933)
148 KOG1036 Mitotic spindle checkp 99.6 2.4E-14 5.2E-19 146.5 17.4 154 554-714 12-165 (323)
149 KOG2106 Uncharacterized conser 99.6 1E-13 2.3E-18 149.1 23.0 200 480-721 247-487 (626)
150 COG2319 FOG: WD40 repeat [Gene 99.6 2.7E-13 5.8E-18 144.7 26.5 177 545-724 145-328 (466)
151 KOG1539 WD repeat protein [Gen 99.6 2.5E-14 5.4E-19 161.5 19.0 203 503-721 409-615 (910)
152 KOG1063 RNA polymerase II elon 99.6 2.5E-14 5.4E-19 158.8 16.8 210 469-712 515-763 (764)
153 KOG1188 WD40 repeat protein [G 99.6 3.7E-14 8.1E-19 146.7 15.9 197 506-721 40-251 (376)
154 KOG1445 Tumor-specific antigen 99.6 2.6E-14 5.6E-19 156.6 15.3 157 555-713 627-799 (1012)
155 KOG1007 WD repeat protein TSSC 99.6 8.7E-14 1.9E-18 141.1 17.9 202 481-712 125-361 (370)
156 KOG1445 Tumor-specific antigen 99.6 2.1E-14 4.7E-19 157.2 14.1 196 507-714 641-846 (1012)
157 KOG0649 WD40 repeat protein [G 99.6 2.6E-13 5.6E-18 134.8 20.1 204 503-723 19-248 (325)
158 KOG1007 WD repeat protein TSSC 99.6 8.1E-14 1.7E-18 141.3 16.8 170 542-713 109-290 (370)
159 KOG4378 Nuclear protein COP1 [ 99.6 2.9E-14 6.2E-19 152.9 14.3 164 557-721 81-248 (673)
160 KOG4328 WD40 protein [Function 99.6 5.4E-14 1.2E-18 150.1 16.0 217 474-722 229-460 (498)
161 KOG0321 WD40 repeat-containing 99.6 5E-14 1.1E-18 155.2 16.0 200 506-723 112-359 (720)
162 KOG4594 Sequence-specific sing 99.6 2.1E-15 4.6E-20 151.4 4.9 77 4-81 12-92 (354)
163 COG2319 FOG: WD40 repeat [Gene 99.6 2E-12 4.2E-17 138.0 27.8 198 507-723 78-283 (466)
164 KOG2919 Guanine nucleotide-bin 99.6 7.7E-14 1.7E-18 143.4 15.9 202 503-723 120-339 (406)
165 KOG0771 Prolactin regulatory e 99.5 5.7E-14 1.2E-18 149.1 14.9 194 483-712 148-354 (398)
166 KOG1310 WD40 repeat protein [G 99.5 8.4E-14 1.8E-18 150.9 15.8 210 474-717 45-308 (758)
167 KOG2048 WD40 repeat protein [G 99.5 6.4E-13 1.4E-17 147.7 22.5 203 474-714 64-277 (691)
168 KOG0290 Conserved WD40 repeat- 99.5 2E-13 4.3E-18 138.6 17.0 188 506-709 163-362 (364)
169 KOG2919 Guanine nucleotide-bin 99.5 3.3E-13 7E-18 138.8 18.3 219 484-724 54-294 (406)
170 KOG1063 RNA polymerase II elon 99.5 5.9E-14 1.3E-18 155.9 13.8 168 544-712 514-699 (764)
171 KOG0290 Conserved WD40 repeat- 99.5 2.8E-13 6E-18 137.6 17.4 216 476-713 93-319 (364)
172 KOG1523 Actin-related protein 99.5 1.7E-13 3.8E-18 140.8 16.0 204 479-714 10-238 (361)
173 KOG0642 Cell-cycle nuclear pro 99.5 9.3E-14 2E-18 151.6 13.8 179 545-724 284-531 (577)
174 KOG1310 WD40 repeat protein [G 99.5 3.6E-14 7.9E-19 153.7 9.5 167 546-712 41-231 (758)
175 PF08662 eIF2A: Eukaryotic tra 99.5 2.1E-12 4.4E-17 129.9 21.5 156 559-720 9-186 (194)
176 KOG1034 Transcriptional repres 99.5 3.2E-13 7E-18 139.2 15.4 162 551-714 34-213 (385)
177 KOG0649 WD40 repeat protein [G 99.5 1.4E-12 3E-17 129.7 19.1 193 506-712 72-274 (325)
178 KOG0644 Uncharacterized conser 99.5 2.4E-14 5.2E-19 161.1 7.2 196 499-717 195-473 (1113)
179 KOG2055 WD40 repeat protein [G 99.5 1E-12 2.2E-17 140.5 17.4 167 554-721 212-383 (514)
180 KOG2445 Nuclear pore complex c 99.5 1.7E-12 3.7E-17 132.9 18.3 173 552-724 10-223 (361)
181 KOG1587 Cytoplasmic dynein int 99.5 1.7E-12 3.8E-17 147.6 19.4 215 472-713 235-517 (555)
182 PRK01742 tolB translocation pr 99.5 3.7E-12 8E-17 143.4 22.0 161 558-725 250-416 (429)
183 KOG2110 Uncharacterized conser 99.5 1E-11 2.2E-16 130.1 22.8 155 555-714 87-250 (391)
184 KOG0322 G-protein beta subunit 99.4 1.7E-12 3.7E-17 130.5 15.1 158 553-711 148-322 (323)
185 KOG1009 Chromatin assembly com 99.4 1.9E-12 4E-17 136.8 15.1 164 555-719 13-202 (434)
186 KOG1538 Uncharacterized conser 99.4 1E-11 2.3E-16 137.1 21.3 199 478-712 11-252 (1081)
187 KOG0650 WD40 repeat nucleolar 99.4 1.5E-12 3.3E-17 142.7 14.0 178 543-724 388-650 (733)
188 KOG0644 Uncharacterized conser 99.4 1.2E-13 2.6E-18 155.6 5.1 120 546-671 181-300 (1113)
189 KOG2394 WD40 protein DMR-N9 [G 99.4 4.2E-12 9.1E-17 137.9 15.9 103 547-650 282-384 (636)
190 KOG2106 Uncharacterized conser 99.4 6.3E-11 1.4E-15 128.0 24.1 155 550-711 363-520 (626)
191 PRK11028 6-phosphogluconolacto 99.4 6.6E-11 1.4E-15 128.3 24.9 185 509-712 5-205 (330)
192 KOG0650 WD40 repeat nucleolar 99.4 2.6E-12 5.6E-17 140.9 13.6 155 553-709 564-732 (733)
193 PRK01742 tolB translocation pr 99.4 1.4E-11 3E-16 138.8 19.9 162 549-718 197-367 (429)
194 KOG0771 Prolactin regulatory e 99.4 2.4E-12 5.1E-17 136.9 12.7 161 559-721 148-320 (398)
195 KOG1524 WD40 repeat-containing 99.4 4.7E-12 1E-16 137.2 14.2 162 508-693 77-238 (737)
196 PRK03629 tolB translocation pr 99.4 1.4E-10 3E-15 130.7 26.8 163 557-724 244-417 (429)
197 KOG1523 Actin-related protein 99.4 1.1E-11 2.3E-16 127.8 15.7 157 554-711 9-175 (361)
198 PRK11028 6-phosphogluconolacto 99.4 1.4E-10 3E-15 125.8 24.5 156 556-712 126-304 (330)
199 KOG2139 WD40 repeat protein [G 99.3 1.5E-10 3.2E-15 121.0 21.7 220 474-715 135-386 (445)
200 PRK02889 tolB translocation pr 99.3 1.4E-10 3E-15 130.7 23.6 167 551-718 191-366 (427)
201 KOG4227 WD40 repeat protein [G 99.3 2.8E-11 6.2E-16 126.8 14.9 164 549-714 50-227 (609)
202 PRK05137 tolB translocation pr 99.3 4.1E-10 8.9E-15 127.1 25.6 164 549-715 195-369 (435)
203 KOG2394 WD40 protein DMR-N9 [G 99.3 7.6E-11 1.6E-15 128.3 18.4 160 565-725 183-375 (636)
204 PF08662 eIF2A: Eukaryotic tra 99.3 1.8E-10 3.8E-15 115.9 20.0 119 555-680 59-187 (194)
205 KOG1524 WD40 repeat-containing 99.3 2.5E-11 5.4E-16 131.7 14.4 180 478-708 103-282 (737)
206 KOG3881 Uncharacterized conser 99.3 1.5E-10 3.2E-15 122.3 19.3 199 503-718 112-326 (412)
207 KOG2139 WD40 repeat protein [G 99.3 1E-10 2.2E-15 122.2 17.8 186 478-702 97-300 (445)
208 KOG1963 WD40 repeat protein [G 99.3 1.2E-10 2.7E-15 133.2 20.0 194 508-722 30-332 (792)
209 PRK02889 tolB translocation pr 99.3 4.5E-10 9.7E-15 126.5 24.3 164 555-723 239-413 (427)
210 PRK04922 tolB translocation pr 99.3 3.1E-10 6.7E-15 128.1 23.0 165 550-717 198-373 (433)
211 PRK04922 tolB translocation pr 99.3 5.7E-10 1.2E-14 125.9 24.3 162 555-721 247-419 (433)
212 KOG1188 WD40 repeat protein [G 99.3 4E-11 8.7E-16 124.5 13.3 145 568-713 41-197 (376)
213 PRK05137 tolB translocation pr 99.3 1.1E-09 2.4E-14 123.6 26.1 161 552-716 242-416 (435)
214 KOG2111 Uncharacterized conser 99.2 7E-10 1.5E-14 114.6 20.8 157 554-714 93-258 (346)
215 KOG1240 Protein kinase contain 99.2 7.3E-10 1.6E-14 130.2 23.4 206 503-722 1058-1283(1431)
216 KOG1517 Guanine nucleotide bin 99.2 2.7E-10 5.9E-15 131.8 19.5 201 505-713 1122-1334(1387)
217 KOG4227 WD40 repeat protein [G 99.2 2.4E-10 5.2E-15 120.0 17.2 211 477-715 54-277 (609)
218 KOG1240 Protein kinase contain 99.2 2.1E-10 4.6E-15 134.6 18.0 179 543-721 1036-1234(1431)
219 KOG1272 WD40-repeat-containing 99.2 4.1E-11 8.8E-16 128.5 10.7 161 545-710 200-360 (545)
220 PRK03629 tolB translocation pr 99.2 2.2E-09 4.8E-14 121.0 25.3 163 552-717 195-368 (429)
221 PF02239 Cytochrom_D1: Cytochr 99.2 6.1E-09 1.3E-13 114.9 27.8 193 508-721 8-211 (369)
222 KOG1587 Cytoplasmic dynein int 99.2 3.1E-10 6.8E-15 129.3 18.0 159 555-714 242-474 (555)
223 KOG2110 Uncharacterized conser 99.2 3.1E-09 6.8E-14 111.7 23.6 120 550-671 124-248 (391)
224 KOG1538 Uncharacterized conser 99.2 4.6E-11 1E-15 132.0 10.5 149 557-712 14-162 (1081)
225 TIGR02800 propeller_TolB tol-p 99.2 3.1E-09 6.6E-14 118.8 24.6 164 550-716 184-358 (417)
226 PRK01029 tolB translocation pr 99.2 3.7E-09 7.9E-14 119.1 25.2 165 555-719 230-410 (428)
227 KOG0280 Uncharacterized conser 99.2 6.5E-10 1.4E-14 113.7 16.9 169 557-725 123-302 (339)
228 KOG0322 G-protein beta subunit 99.2 8.9E-11 1.9E-15 118.3 10.2 152 508-670 167-322 (323)
229 KOG1517 Guanine nucleotide bin 99.2 4.2E-10 9.2E-15 130.3 16.5 158 555-715 1208-1384(1387)
230 KOG3881 Uncharacterized conser 99.2 5.2E-10 1.1E-14 118.2 15.0 177 503-693 158-342 (412)
231 KOG0974 WD-repeat protein WDR6 99.1 8.4E-10 1.8E-14 128.4 16.8 149 561-713 139-289 (967)
232 KOG1064 RAVE (regulator of V-A 99.1 2.9E-10 6.3E-15 137.1 12.5 189 503-722 2217-2408(2439)
233 PRK00178 tolB translocation pr 99.1 8E-09 1.7E-13 116.3 22.9 164 550-716 193-367 (430)
234 KOG2321 WD40 repeat protein [G 99.1 2.5E-09 5.4E-14 117.4 17.8 226 477-721 49-311 (703)
235 KOG1963 WD40 repeat protein [G 99.1 4.6E-09 1E-13 120.5 20.3 167 552-721 202-384 (792)
236 KOG2321 WD40 repeat protein [G 99.1 2E-09 4.3E-14 118.2 15.7 164 548-712 168-343 (703)
237 PRK00178 tolB translocation pr 99.1 3.6E-08 7.8E-13 111.0 26.6 161 556-721 243-414 (430)
238 KOG1354 Serine/threonine prote 99.1 2.8E-09 6E-14 111.0 15.4 218 476-724 22-314 (433)
239 TIGR02800 propeller_TolB tol-p 99.0 5.4E-08 1.2E-12 108.8 26.1 164 553-721 231-405 (417)
240 KOG1272 WD40-repeat-containing 99.0 4.9E-10 1.1E-14 120.3 9.0 161 558-721 132-332 (545)
241 KOG4190 Uncharacterized conser 99.0 5.3E-10 1.1E-14 121.5 9.3 172 547-721 727-915 (1034)
242 KOG0974 WD-repeat protein WDR6 99.0 1.5E-09 3.2E-14 126.4 13.4 142 507-672 146-289 (967)
243 PRK04792 tolB translocation pr 99.0 1.7E-08 3.6E-13 114.5 21.8 163 551-716 213-386 (448)
244 PRK04792 tolB translocation pr 99.0 4.4E-08 9.5E-13 111.1 24.0 161 558-723 264-435 (448)
245 KOG1409 Uncharacterized conser 99.0 6.6E-09 1.4E-13 108.3 15.4 124 547-671 106-270 (404)
246 KOG1334 WD40 repeat protein [G 99.0 1.6E-09 3.4E-14 117.2 11.0 229 478-722 141-434 (559)
247 KOG4547 WD40 repeat-containing 99.0 6E-08 1.3E-12 107.6 21.6 144 566-713 69-221 (541)
248 PF10282 Lactonase: Lactonase, 98.9 1.7E-06 3.7E-11 94.8 32.0 163 555-717 143-329 (345)
249 KOG3914 WD repeat protein WDR4 98.9 1.2E-08 2.7E-13 108.4 13.3 164 501-680 69-232 (390)
250 KOG4497 Uncharacterized conser 98.9 2E-08 4.3E-13 104.1 14.1 160 556-718 49-246 (447)
251 KOG4547 WD40 repeat-containing 98.9 6E-08 1.3E-12 107.5 18.7 157 565-725 3-185 (541)
252 KOG2111 Uncharacterized conser 98.9 3.5E-07 7.5E-12 94.9 22.2 140 566-707 147-317 (346)
253 KOG1334 WD40 repeat protein [G 98.9 4.8E-09 1E-13 113.4 7.8 170 545-714 132-314 (559)
254 COG5170 CDC55 Serine/threonine 98.8 2.8E-08 6.1E-13 102.3 12.8 204 505-724 37-322 (460)
255 KOG0280 Uncharacterized conser 98.8 6.1E-08 1.3E-12 99.5 15.1 171 543-715 153-336 (339)
256 TIGR02658 TTQ_MADH_Hv methylam 98.8 1.9E-06 4.2E-11 93.8 27.5 162 558-720 107-338 (352)
257 KOG3914 WD repeat protein WDR4 98.8 3.5E-08 7.5E-13 105.0 13.0 159 558-721 65-232 (390)
258 PRK01029 tolB translocation pr 98.8 2.3E-07 5.1E-12 104.5 20.3 136 556-693 281-425 (428)
259 PF02239 Cytochrom_D1: Cytochr 98.8 1.1E-06 2.4E-11 97.1 24.9 197 506-723 48-268 (369)
260 KOG2315 Predicted translation 98.8 2.7E-07 5.8E-12 101.8 19.6 151 560-717 222-394 (566)
261 KOG0309 Conserved WD40 repeat- 98.8 2.1E-08 4.5E-13 112.8 10.8 177 549-725 108-300 (1081)
262 KOG1354 Serine/threonine prote 98.8 1.1E-07 2.4E-12 99.3 15.0 160 552-714 161-361 (433)
263 PF10282 Lactonase: Lactonase, 98.8 2.5E-06 5.4E-11 93.5 26.4 157 556-712 37-222 (345)
264 KOG4497 Uncharacterized conser 98.7 5.4E-08 1.2E-12 101.0 10.5 140 560-702 13-153 (447)
265 PLN02919 haloacid dehalogenase 98.7 5.2E-06 1.1E-10 103.1 28.1 156 559-716 686-892 (1057)
266 PRK04043 tolB translocation pr 98.7 6E-06 1.3E-10 92.8 25.5 155 557-716 189-361 (419)
267 KOG0882 Cyclophilin-related pe 98.7 5.7E-08 1.2E-12 104.4 8.7 200 504-721 18-240 (558)
268 PRK04043 tolB translocation pr 98.6 1.5E-05 3.3E-10 89.6 26.1 155 554-714 231-402 (419)
269 KOG2315 Predicted translation 98.6 1.3E-06 2.8E-11 96.5 16.8 134 554-694 269-412 (566)
270 KOG4532 WD40-like repeat conta 98.6 6.2E-06 1.4E-10 84.0 20.1 205 496-719 74-289 (344)
271 COG2706 3-carboxymuconate cycl 98.6 1.5E-05 3.4E-10 84.4 23.8 162 553-714 37-223 (346)
272 PF15492 Nbas_N: Neuroblastoma 98.6 2E-05 4.4E-10 81.4 23.7 163 558-721 46-268 (282)
273 COG2706 3-carboxymuconate cycl 98.5 1.5E-05 3.2E-10 84.6 22.6 207 500-712 94-321 (346)
274 KOG4714 Nucleoporin [Nuclear s 98.5 2E-07 4.3E-12 94.3 8.1 198 508-713 49-255 (319)
275 KOG1064 RAVE (regulator of V-A 98.5 2.2E-07 4.8E-12 113.0 9.7 166 550-721 2203-2375(2439)
276 KOG1275 PAB-dependent poly(A) 98.5 1.8E-06 3.9E-11 99.8 15.4 157 548-710 170-340 (1118)
277 KOG4190 Uncharacterized conser 98.5 4.2E-07 9.1E-12 99.4 9.4 193 506-714 747-950 (1034)
278 KOG1409 Uncharacterized conser 98.5 9.9E-07 2.2E-11 92.4 11.2 159 555-714 68-272 (404)
279 KOG4714 Nucleoporin [Nuclear s 98.5 7.3E-07 1.6E-11 90.3 9.8 95 578-672 160-255 (319)
280 PF08513 LisH: LisH; InterPro 98.5 1.8E-07 3.9E-12 62.9 3.7 27 10-36 1-27 (27)
281 PLN02919 haloacid dehalogenase 98.5 4.9E-05 1.1E-09 94.5 27.8 159 557-718 625-839 (1057)
282 COG4946 Uncharacterized protei 98.5 1E-05 2.2E-10 87.8 18.7 148 552-702 356-508 (668)
283 KOG1645 RING-finger-containing 98.5 1.9E-06 4.2E-11 91.9 13.1 169 544-713 182-462 (463)
284 PF08450 SGL: SMP-30/Gluconola 98.4 0.00022 4.9E-09 74.0 28.5 158 558-721 42-221 (246)
285 COG4946 Uncharacterized protei 98.4 3.9E-05 8.4E-10 83.4 22.8 148 566-719 331-484 (668)
286 KOG2695 WD40 repeat protein [G 98.4 5.9E-07 1.3E-11 94.0 8.8 158 560-722 216-386 (425)
287 KOG2066 Vacuolar assembly/sort 98.4 7.7E-06 1.7E-10 93.9 17.1 174 505-713 48-234 (846)
288 KOG2695 WD40 repeat protein [G 98.3 8.5E-07 1.8E-11 92.9 6.8 136 554-692 251-402 (425)
289 KOG4532 WD40-like repeat conta 98.3 4.9E-05 1.1E-09 77.6 18.8 155 558-713 161-332 (344)
290 KOG0309 Conserved WD40 repeat- 98.3 2.5E-06 5.5E-11 96.4 10.4 209 473-713 108-340 (1081)
291 PF00400 WD40: WD domain, G-be 98.3 2.1E-06 4.7E-11 62.4 6.7 38 546-583 2-39 (39)
292 COG5170 CDC55 Serine/threonine 98.3 7E-06 1.5E-10 85.0 12.5 158 552-712 169-367 (460)
293 TIGR02658 TTQ_MADH_Hv methylam 98.3 0.00038 8.2E-09 76.1 26.1 172 545-721 37-296 (352)
294 PF00400 WD40: WD domain, G-be 98.3 2.5E-06 5.4E-11 62.1 6.4 39 587-625 1-39 (39)
295 KOG1832 HIV-1 Vpr-binding prot 98.3 4.3E-07 9.4E-12 104.0 2.8 167 544-720 1090-1263(1516)
296 PF13360 PQQ_2: PQQ-like domai 98.2 0.00032 6.9E-09 71.8 22.6 148 566-719 75-237 (238)
297 KOG2041 WD40 repeat protein [G 98.2 5.3E-06 1.1E-10 93.5 9.8 158 554-713 13-187 (1189)
298 COG5354 Uncharacterized protei 98.2 0.00011 2.4E-09 80.9 19.4 162 556-719 72-312 (561)
299 KOG1912 WD40 repeat protein [G 98.2 4.9E-05 1.1E-09 86.8 17.2 180 541-721 41-269 (1062)
300 PF07433 DUF1513: Protein of u 98.2 0.00022 4.7E-09 75.7 20.5 157 561-721 56-256 (305)
301 KOG1912 WD40 repeat protein [G 98.1 2.5E-05 5.3E-10 89.2 13.8 151 558-711 18-185 (1062)
302 PF08450 SGL: SMP-30/Gluconola 98.1 0.00066 1.4E-08 70.5 23.6 143 555-701 85-244 (246)
303 TIGR03300 assembly_YfgL outer 98.1 0.00023 4.9E-09 78.8 21.1 149 568-724 191-350 (377)
304 PF04762 IKI3: IKI3 family; I 98.1 0.00022 4.8E-09 87.4 22.5 154 558-713 259-457 (928)
305 KOG2066 Vacuolar assembly/sort 98.1 2.2E-05 4.8E-10 90.2 12.4 151 555-721 39-196 (846)
306 KOG2041 WD40 repeat protein [G 98.1 0.00016 3.5E-09 82.0 18.7 203 481-703 16-279 (1189)
307 KOG1275 PAB-dependent poly(A) 98.1 2.4E-05 5.2E-10 90.8 11.6 143 506-671 187-342 (1118)
308 PF11768 DUF3312: Protein of u 98.0 0.0011 2.3E-08 75.0 23.9 111 558-672 208-330 (545)
309 TIGR03300 assembly_YfgL outer 98.0 0.00096 2.1E-08 73.8 23.2 147 566-720 104-267 (377)
310 KOG2114 Vacuolar assembly/sort 98.0 0.00037 8.1E-09 81.0 19.9 195 508-724 37-256 (933)
311 PF07433 DUF1513: Protein of u 98.0 0.0012 2.6E-08 70.2 22.3 161 544-710 87-283 (305)
312 KOG1832 HIV-1 Vpr-binding prot 98.0 2.8E-06 6.1E-11 97.5 2.4 192 496-721 1103-1300(1516)
313 PF11768 DUF3312: Protein of u 98.0 0.00025 5.4E-09 79.8 17.7 76 553-630 257-332 (545)
314 COG5354 Uncharacterized protei 97.9 0.00066 1.4E-08 74.9 19.7 150 559-714 226-397 (561)
315 PRK02888 nitrous-oxide reducta 97.9 0.0003 6.4E-09 81.0 17.1 150 562-713 199-405 (635)
316 PF13360 PQQ_2: PQQ-like domai 97.9 0.00053 1.1E-08 70.1 17.6 144 575-723 1-151 (238)
317 PF04762 IKI3: IKI3 family; I 97.9 0.0009 1.9E-08 82.2 22.4 152 554-710 208-377 (928)
318 KOG0882 Cyclophilin-related pe 97.9 0.00034 7.5E-09 76.0 15.5 151 569-721 113-314 (558)
319 PF08596 Lgl_C: Lethal giant l 97.8 0.0057 1.2E-07 68.3 25.0 177 544-722 75-300 (395)
320 KOG2314 Translation initiation 97.8 0.00084 1.8E-08 74.7 17.8 152 559-712 397-573 (698)
321 KOG2314 Translation initiation 97.7 0.00053 1.1E-08 76.2 14.3 156 558-719 213-388 (698)
322 COG0823 TolB Periplasmic compo 97.7 0.00071 1.5E-08 76.1 15.6 162 551-715 188-361 (425)
323 PF15492 Nbas_N: Neuroblastoma 97.7 0.0043 9.3E-08 64.5 18.9 172 481-681 45-269 (282)
324 KOG1008 Uncharacterized conser 97.5 2.2E-05 4.9E-10 88.1 0.6 186 507-712 71-275 (783)
325 KOG3617 WD40 and TPR repeat-co 97.5 0.00066 1.4E-08 78.5 12.1 70 558-627 62-131 (1416)
326 COG3391 Uncharacterized conser 97.5 0.038 8.3E-07 61.5 26.1 163 557-721 117-292 (381)
327 PF06977 SdiA-regulated: SdiA- 97.4 0.055 1.2E-06 56.6 24.3 152 556-709 65-247 (248)
328 PF06977 SdiA-regulated: SdiA- 97.4 0.031 6.8E-07 58.4 22.3 171 548-721 14-209 (248)
329 PF08553 VID27: VID27 cytoplas 97.4 0.0062 1.3E-07 72.7 18.9 143 566-711 492-646 (794)
330 KOG1645 RING-finger-containing 97.4 0.00035 7.6E-09 75.1 7.7 92 579-672 175-267 (463)
331 KOG1920 IkappaB kinase complex 97.4 0.016 3.5E-07 70.1 22.0 156 555-714 109-324 (1265)
332 PRK11138 outer membrane biogen 97.3 0.015 3.2E-07 65.0 20.0 146 568-721 206-362 (394)
333 COG3391 Uncharacterized conser 97.3 0.024 5.3E-07 63.1 20.8 159 558-719 76-246 (381)
334 KOG4640 Anaphase-promoting com 97.3 0.0012 2.6E-08 74.8 9.8 94 555-650 20-115 (665)
335 PF03178 CPSF_A: CPSF A subuni 97.3 0.029 6.3E-07 60.8 20.6 159 544-709 78-262 (321)
336 KOG4649 PQQ (pyrrolo-quinoline 97.2 0.042 9.1E-07 56.6 19.8 147 566-719 62-213 (354)
337 KOG3617 WD40 and TPR repeat-co 97.2 0.002 4.3E-08 74.6 11.5 109 559-671 19-131 (1416)
338 PF04053 Coatomer_WDAD: Coatom 97.2 0.0066 1.4E-07 68.7 15.5 142 554-712 31-173 (443)
339 KOG1920 IkappaB kinase complex 97.2 0.019 4.1E-07 69.6 19.7 151 558-710 198-363 (1265)
340 KOG2114 Vacuolar assembly/sort 97.2 0.016 3.4E-07 67.9 18.3 155 557-715 27-204 (933)
341 KOG1008 Uncharacterized conser 97.2 8.4E-05 1.8E-09 83.7 -0.1 154 555-710 56-223 (783)
342 PF02897 Peptidase_S9_N: Proly 97.1 0.083 1.8E-06 59.2 23.2 157 558-715 126-312 (414)
343 smart00320 WD40 WD40 repeats. 97.1 0.0012 2.5E-08 45.1 5.4 38 546-583 3-40 (40)
344 COG0823 TolB Periplasmic compo 97.1 0.0094 2E-07 67.2 15.3 144 556-702 238-389 (425)
345 smart00667 LisH Lissencephaly 97.1 0.00083 1.8E-08 47.1 4.2 31 9-39 3-33 (34)
346 smart00320 WD40 WD40 repeats. 97.1 0.0018 3.9E-08 44.2 5.9 39 587-625 2-40 (40)
347 PRK11138 outer membrane biogen 97.0 0.019 4.1E-07 64.1 16.8 135 567-711 256-393 (394)
348 KOG4640 Anaphase-promoting com 97.0 0.0026 5.7E-08 72.0 9.5 92 598-692 21-115 (665)
349 PRK02888 nitrous-oxide reducta 97.0 0.015 3.2E-07 67.3 15.7 103 565-672 286-405 (635)
350 KOG4649 PQQ (pyrrolo-quinoline 97.0 0.047 1E-06 56.2 17.4 137 567-707 23-160 (354)
351 KOG3621 WD40 repeat-containing 97.0 0.0058 1.2E-07 70.1 12.1 115 557-672 35-155 (726)
352 COG3386 Gluconolactonase [Carb 96.9 0.15 3.3E-06 55.0 22.0 163 556-722 66-252 (307)
353 PF14783 BBS2_Mid: Ciliary BBS 96.9 0.048 1.1E-06 49.5 15.0 101 600-708 2-110 (111)
354 PF00780 CNH: CNH domain; Int 96.8 0.089 1.9E-06 55.3 19.2 144 566-717 6-170 (275)
355 PF03178 CPSF_A: CPSF A subuni 96.8 0.12 2.6E-06 55.9 20.5 140 567-712 42-202 (321)
356 PF04053 Coatomer_WDAD: Coatom 96.8 0.064 1.4E-06 60.8 18.6 136 567-712 117-262 (443)
357 PF06433 Me-amine-dh_H: Methyl 96.8 0.14 3E-06 55.5 19.8 155 568-722 148-330 (342)
358 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.054 1.2E-06 49.2 13.9 101 558-666 2-109 (111)
359 cd00216 PQQ_DH Dehydrogenases 96.7 0.18 3.9E-06 58.1 21.7 152 568-721 111-328 (488)
360 KOG2395 Protein involved in va 96.7 0.018 3.9E-07 64.3 12.5 143 566-712 344-500 (644)
361 PF00780 CNH: CNH domain; Int 96.7 0.64 1.4E-05 48.8 24.3 160 558-724 38-267 (275)
362 COG3386 Gluconolactonase [Carb 96.6 0.06 1.3E-06 58.1 16.0 144 557-702 112-275 (307)
363 PRK13616 lipoprotein LpqB; Pro 96.6 0.06 1.3E-06 63.3 17.2 145 556-710 350-523 (591)
364 cd00216 PQQ_DH Dehydrogenases 96.6 0.088 1.9E-06 60.6 18.4 153 561-721 222-433 (488)
365 COG3490 Uncharacterized protei 96.6 0.061 1.3E-06 56.2 14.6 156 561-719 119-317 (366)
366 KOG3621 WD40 repeat-containing 96.5 0.01 2.3E-07 68.1 9.6 117 596-713 32-155 (726)
367 PF00930 DPPIV_N: Dipeptidyl p 96.5 0.034 7.3E-07 61.2 13.6 153 564-718 1-224 (353)
368 PF00930 DPPIV_N: Dipeptidyl p 96.5 0.1 2.2E-06 57.4 17.2 149 554-702 182-347 (353)
369 PF15390 DUF4613: Domain of un 96.4 0.13 2.9E-06 58.5 17.6 145 556-701 57-220 (671)
370 PF04841 Vps16_N: Vps16, N-ter 96.3 0.4 8.7E-06 54.0 21.1 157 556-721 81-255 (410)
371 KOG1916 Nuclear protein, conta 96.3 0.0024 5.1E-08 74.7 2.8 164 549-717 126-328 (1283)
372 PF15390 DUF4613: Domain of un 96.1 0.13 2.8E-06 58.7 15.3 147 556-711 20-185 (671)
373 PF08553 VID27: VID27 cytoplas 96.1 0.11 2.4E-06 62.3 15.6 98 569-670 544-646 (794)
374 PF10168 Nup88: Nuclear pore c 96.1 0.52 1.1E-05 56.6 21.0 81 553-634 82-186 (717)
375 PHA02713 hypothetical protein; 95.9 0.15 3.3E-06 59.7 15.7 148 566-719 351-540 (557)
376 PF02897 Peptidase_S9_N: Proly 95.9 3.8 8.3E-05 45.8 26.6 159 558-717 229-409 (414)
377 KOG3630 Nuclear pore complex, 95.9 0.085 1.8E-06 63.7 13.0 140 557-699 102-260 (1405)
378 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.9 1.2 2.6E-05 51.9 22.5 151 567-718 120-339 (527)
379 PF12234 Rav1p_C: RAVE protein 95.9 0.28 6.1E-06 57.5 17.1 126 542-670 16-155 (631)
380 TIGR02604 Piru_Ver_Nterm putat 95.7 0.6 1.3E-05 51.7 18.7 144 556-701 14-202 (367)
381 PF14870 PSII_BNR: Photosynthe 95.7 1.1 2.4E-05 48.3 19.5 161 542-709 133-301 (302)
382 PF04841 Vps16_N: Vps16, N-ter 95.6 1.4 3.1E-05 49.6 21.3 53 640-693 216-270 (410)
383 PF08596 Lgl_C: Lethal giant l 95.6 0.19 4.1E-06 56.3 14.0 146 557-712 3-173 (395)
384 KOG2444 WD40 repeat protein [G 95.6 0.023 5E-07 57.5 6.1 139 570-713 33-178 (238)
385 PF10647 Gmad1: Lipoprotein Lp 95.6 0.93 2E-05 47.6 18.4 143 557-702 25-185 (253)
386 PRK13616 lipoprotein LpqB; Pro 95.6 0.16 3.5E-06 59.7 13.9 112 598-714 350-481 (591)
387 PF14583 Pectate_lyase22: Olig 95.4 1.5 3.1E-05 48.6 19.7 191 506-716 48-276 (386)
388 TIGR03074 PQQ_membr_DH membran 95.4 3.5 7.7E-05 50.0 24.8 155 566-721 259-486 (764)
389 PF05096 Glu_cyclase_2: Glutam 95.4 4.3 9.3E-05 42.7 22.6 169 544-721 32-212 (264)
390 KOG4499 Ca2+-binding protein R 95.4 0.56 1.2E-05 48.0 14.9 136 556-693 109-264 (310)
391 COG3204 Uncharacterized protei 95.3 2.1 4.6E-05 45.3 19.3 168 551-720 81-270 (316)
392 KOG4441 Proteins containing BT 95.3 0.57 1.2E-05 55.0 17.1 150 560-715 327-502 (571)
393 PF10395 Utp8: Utp8 family; I 95.1 2.6 5.7E-05 49.6 21.4 163 555-721 129-314 (670)
394 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.0 1.4 3.1E-05 51.3 19.3 143 578-721 272-499 (527)
395 KOG4441 Proteins containing BT 95.0 0.6 1.3E-05 54.9 16.2 144 566-715 380-549 (571)
396 KOG2079 Vacuolar assembly/sort 94.9 0.092 2E-06 63.2 9.1 97 566-664 98-198 (1206)
397 PHA03098 kelch-like protein; P 94.9 0.78 1.7E-05 53.3 16.9 142 566-714 342-513 (534)
398 KOG2079 Vacuolar assembly/sort 94.8 0.074 1.6E-06 64.0 8.1 101 608-711 98-202 (1206)
399 KOG2395 Protein involved in va 94.7 0.36 7.8E-06 54.4 12.5 110 558-671 378-500 (644)
400 COG3204 Uncharacterized protei 94.7 2.8 6.1E-05 44.5 18.2 149 558-708 131-308 (316)
401 PF05096 Glu_cyclase_2: Glutam 94.7 2.9 6.4E-05 43.9 18.5 120 598-721 45-166 (264)
402 PF05694 SBP56: 56kDa selenium 94.6 3.9 8.5E-05 45.8 20.0 153 561-714 135-344 (461)
403 PF06433 Me-amine-dh_H: Methyl 94.6 1.3 2.7E-05 48.2 15.9 136 577-717 17-171 (342)
404 KOG2444 WD40 repeat protein [G 94.5 0.12 2.6E-06 52.5 7.6 104 507-628 71-178 (238)
405 PF12234 Rav1p_C: RAVE protein 94.5 0.95 2.1E-05 53.2 15.9 111 598-711 30-155 (631)
406 PF14870 PSII_BNR: Photosynthe 94.4 6.7 0.00015 42.3 21.0 110 594-707 141-256 (302)
407 PF14583 Pectate_lyase22: Olig 94.3 1.2 2.7E-05 49.1 15.4 143 558-702 38-207 (386)
408 PRK10115 protease 2; Provision 94.2 3.3 7.1E-05 49.9 20.2 111 558-670 129-254 (686)
409 KOG1916 Nuclear protein, conta 94.1 0.059 1.3E-06 63.6 4.9 120 556-676 181-328 (1283)
410 KOG3630 Nuclear pore complex, 94.1 0.25 5.3E-06 60.0 10.0 114 598-711 101-227 (1405)
411 PF12894 Apc4_WD40: Anaphase-p 94.0 0.15 3.3E-06 39.0 5.5 30 555-584 11-40 (47)
412 PF10647 Gmad1: Lipoprotein Lp 93.9 8.2 0.00018 40.4 20.4 115 557-671 67-197 (253)
413 PF10214 Rrn6: RNA polymerase 93.9 6.5 0.00014 48.0 22.2 157 553-713 77-277 (765)
414 PHA02790 Kelch-like protein; P 93.8 2.5 5.5E-05 48.6 17.7 141 566-715 318-473 (480)
415 COG5276 Uncharacterized conser 93.6 10 0.00022 40.4 19.6 149 556-714 87-243 (370)
416 PRK13684 Ycf48-like protein; P 93.6 2.9 6.3E-05 45.7 17.0 159 542-710 161-329 (334)
417 TIGR03118 PEPCTERM_chp_1 conse 93.5 13 0.00027 40.0 20.5 69 558-626 25-117 (336)
418 KOG4499 Ca2+-binding protein R 93.4 3.5 7.7E-05 42.3 15.5 121 597-721 108-250 (310)
419 TIGR03074 PQQ_membr_DH membran 93.3 11 0.00024 45.8 22.6 153 567-722 194-432 (764)
420 KOG1897 Damage-specific DNA bi 93.3 6.6 0.00014 47.7 19.7 149 556-709 830-1001(1096)
421 COG5167 VID27 Protein involved 93.2 2.3 4.9E-05 48.0 14.8 143 566-712 478-632 (776)
422 COG3490 Uncharacterized protei 93.1 2.8 6.1E-05 44.2 14.6 143 558-700 70-243 (366)
423 PF02333 Phytase: Phytase; In 93.1 6.5 0.00014 43.6 18.4 144 566-712 67-237 (381)
424 PF14761 HPS3_N: Hermansky-Pud 93.0 3.1 6.7E-05 42.3 14.4 139 568-712 29-214 (215)
425 PHA02713 hypothetical protein; 92.8 1.8 4E-05 50.7 14.7 140 566-713 303-489 (557)
426 PF05694 SBP56: 56kDa selenium 92.7 3.3 7.2E-05 46.4 15.4 146 557-702 182-393 (461)
427 PF14655 RAB3GAP2_N: Rab3 GTPa 92.2 1.1 2.4E-05 50.3 11.2 86 636-722 303-408 (415)
428 PF08728 CRT10: CRT10; InterP 92.2 4.2 9E-05 48.5 16.3 112 558-670 103-245 (717)
429 PF12894 Apc4_WD40: Anaphase-p 92.1 0.44 9.6E-06 36.5 5.6 35 682-717 11-45 (47)
430 PF10214 Rrn6: RNA polymerase 91.9 9.7 0.00021 46.5 19.9 125 555-681 145-290 (765)
431 KOG2377 Uncharacterized conser 91.9 3.8 8.3E-05 45.7 14.4 119 554-674 65-188 (657)
432 PF14727 PHTB1_N: PTHB1 N-term 91.6 9.8 0.00021 42.9 17.9 145 567-711 37-203 (418)
433 PRK13684 Ycf48-like protein; P 91.6 11 0.00024 41.2 18.2 106 597-707 172-283 (334)
434 TIGR03548 mutarot_permut cycli 91.6 8.3 0.00018 41.6 17.1 108 566-676 72-199 (323)
435 PF14781 BBS2_N: Ciliary BBSom 91.5 6.8 0.00015 37.0 13.7 118 603-722 4-135 (136)
436 PF14655 RAB3GAP2_N: Rab3 GTPa 91.5 2.1 4.6E-05 48.1 12.5 91 590-681 300-408 (415)
437 PF08801 Nucleoporin_N: Nup133 91.2 11 0.00024 42.5 18.1 31 684-714 191-221 (422)
438 TIGR02604 Piru_Ver_Nterm putat 91.1 8.1 0.00017 42.8 16.7 98 556-658 72-200 (367)
439 PLN00033 photosystem II stabil 91.0 13 0.00029 41.6 18.2 144 558-709 241-396 (398)
440 TIGR02276 beta_rpt_yvtn 40-res 90.7 1 2.2E-05 32.7 6.2 42 650-691 1-42 (42)
441 PF08728 CRT10: CRT10; InterP 90.5 8.6 0.00019 45.9 16.6 142 567-711 49-245 (717)
442 COG4257 Vgb Streptogramin lyas 90.3 8.1 0.00017 40.7 14.3 152 557-714 63-220 (353)
443 PHA03098 kelch-like protein; P 90.1 3.2 6.9E-05 48.2 12.9 143 566-715 294-467 (534)
444 KOG2377 Uncharacterized conser 89.6 4.6 0.0001 45.1 12.4 152 559-714 26-187 (657)
445 COG1520 FOG: WD40-like repeat 89.5 13 0.00028 41.1 16.5 149 569-721 70-226 (370)
446 PF13449 Phytase-like: Esteras 89.4 32 0.00068 37.5 19.2 144 555-700 19-232 (326)
447 TIGR03606 non_repeat_PQQ dehyd 89.4 45 0.00098 38.1 20.8 55 555-609 29-90 (454)
448 PRK10350 hypothetical protein; 89.3 1.1 2.5E-05 41.0 6.4 14 68-81 21-35 (145)
449 PF12657 TFIIIC_delta: Transcr 89.0 2.3 4.9E-05 41.9 9.1 32 641-672 86-122 (173)
450 PF05935 Arylsulfotrans: Aryls 88.8 19 0.00042 41.4 17.8 143 575-724 126-313 (477)
451 PF14761 HPS3_N: Hermansky-Pud 88.7 9.1 0.0002 39.0 13.1 104 610-714 29-165 (215)
452 COG5276 Uncharacterized conser 88.6 37 0.00081 36.3 22.9 149 507-679 97-249 (370)
453 KOG1897 Damage-specific DNA bi 88.5 25 0.00054 43.0 18.3 134 578-714 471-617 (1096)
454 PF07569 Hira: TUP1-like enhan 88.4 2.9 6.3E-05 42.9 9.7 74 605-680 18-104 (219)
455 PRK10115 protease 2; Provision 87.9 71 0.0015 38.6 22.9 152 559-714 175-348 (686)
456 PF10313 DUF2415: Uncharacteri 87.8 1.9 4.2E-05 32.4 5.6 31 556-586 1-34 (43)
457 PF07995 GSDH: Glucose / Sorbo 87.7 26 0.00056 38.3 17.2 100 558-660 4-132 (331)
458 PF10313 DUF2415: Uncharacteri 87.2 2 4.4E-05 32.2 5.5 32 641-672 1-34 (43)
459 COG1520 FOG: WD40-like repeat 86.9 54 0.0012 36.1 19.8 153 566-722 111-278 (370)
460 KOG2247 WD40 repeat-containing 86.9 0.059 1.3E-06 59.9 -3.9 148 558-710 37-186 (615)
461 PHA02790 Kelch-like protein; P 86.7 9.2 0.0002 44.0 13.6 138 566-714 271-425 (480)
462 PF07250 Glyoxal_oxid_N: Glyox 86.5 8.7 0.00019 40.1 11.9 140 580-721 49-206 (243)
463 KOG4460 Nuclear pore complex, 86.5 5.7 0.00012 45.1 10.9 74 642-717 105-203 (741)
464 KOG4460 Nuclear pore complex, 86.2 8.4 0.00018 43.8 12.0 76 555-630 103-201 (741)
465 PF10395 Utp8: Utp8 family; I 85.6 54 0.0012 39.0 18.8 124 597-721 129-268 (670)
466 KOG2280 Vacuolar assembly/sort 85.6 20 0.00044 42.5 15.2 40 682-721 216-255 (829)
467 PF11498 Activator_LAG-3: Tran 85.5 0.25 5.4E-06 52.6 0.0 6 49-54 276-281 (468)
468 PF10168 Nup88: Nuclear pore c 85.3 32 0.00068 41.7 17.4 74 597-672 84-180 (717)
469 PF07569 Hira: TUP1-like enhan 85.2 4.8 0.0001 41.3 9.2 65 563-628 18-96 (219)
470 PF11498 Activator_LAG-3: Tran 84.8 0.28 6.1E-06 52.2 0.0 6 129-134 379-384 (468)
471 PF14781 BBS2_N: Ciliary BBSom 84.2 35 0.00075 32.3 13.4 115 559-678 2-132 (136)
472 COG4257 Vgb Streptogramin lyas 83.5 66 0.0014 34.2 18.9 112 557-673 105-220 (353)
473 COG5167 VID27 Protein involved 83.2 14 0.0003 42.0 12.0 61 608-671 572-632 (776)
474 TIGR03032 conserved hypothetic 83.1 12 0.00025 40.4 11.0 91 623-721 189-299 (335)
475 TIGR03606 non_repeat_PQQ dehyd 82.8 39 0.00085 38.6 15.9 106 597-702 29-165 (454)
476 PLN02153 epithiospecifier prot 82.6 56 0.0012 35.5 16.9 52 663-715 217-287 (341)
477 KOG1900 Nuclear pore complex, 80.9 8.3 0.00018 48.3 10.2 143 567-713 91-273 (1311)
478 PLN00033 photosystem II stabil 80.7 1E+02 0.0023 34.6 19.3 105 600-709 241-353 (398)
479 PF07995 GSDH: Glucose / Sorbo 80.6 24 0.00051 38.5 13.0 102 599-702 3-133 (331)
480 PF11715 Nup160: Nucleoporin N 79.9 11 0.00025 43.9 10.9 71 565-636 156-256 (547)
481 PF11715 Nup160: Nucleoporin N 78.9 9.4 0.0002 44.6 9.8 73 607-679 156-256 (547)
482 PF14727 PHTB1_N: PTHB1 N-term 78.7 1.2E+02 0.0027 34.3 21.7 206 475-717 124-365 (418)
483 PLN02153 epithiospecifier prot 78.1 1.1E+02 0.0023 33.3 18.8 55 619-676 217-289 (341)
484 PF12768 Rax2: Cortical protei 77.9 35 0.00077 36.4 12.8 98 577-676 16-128 (281)
485 KOG1896 mRNA cleavage and poly 77.8 46 0.001 41.7 14.9 154 563-722 582-753 (1366)
486 KOG1520 Predicted alkaloid syn 77.3 93 0.002 34.5 15.8 141 555-700 114-282 (376)
487 PF07676 PD40: WD40-like Beta 76.8 9.6 0.00021 27.3 5.8 32 637-668 5-38 (39)
488 COG4590 ABC-type uncharacteriz 75.6 6.3 0.00014 44.0 6.4 163 551-716 216-390 (733)
489 PF05935 Arylsulfotrans: Aryls 74.9 1E+02 0.0022 35.6 16.5 118 561-681 153-311 (477)
490 TIGR02171 Fb_sc_TIGR02171 Fibr 74.4 20 0.00044 43.7 10.8 94 567-660 319-418 (912)
491 TIGR03548 mutarot_permut cycli 73.9 81 0.0018 33.9 14.7 106 608-715 72-197 (323)
492 PRK13614 lipoprotein LpqB; Pro 73.6 2E+02 0.0043 34.1 18.9 152 557-712 344-518 (573)
493 TIGR02276 beta_rpt_yvtn 40-res 73.1 11 0.00023 27.1 5.3 30 692-721 1-31 (42)
494 TIGR03547 muta_rot_YjhT mutatr 73.0 1.4E+02 0.0031 32.3 17.4 11 566-576 118-128 (346)
495 KOG1983 Tomosyn and related SN 72.7 92 0.002 39.3 16.4 26 691-716 243-268 (993)
496 KOG1898 Splicing factor 3b, su 72.5 62 0.0013 40.1 13.9 141 578-722 854-1015(1205)
497 smart00036 CNH Domain found in 72.1 1.5E+02 0.0032 31.9 16.0 149 557-711 2-182 (302)
498 TIGR03547 muta_rot_YjhT mutatr 72.1 1.5E+02 0.0033 32.1 18.2 22 566-587 63-95 (346)
499 KOG2659 LisH motif-containing 72.0 3.6 7.9E-05 42.1 3.3 39 9-47 26-64 (228)
500 KOG0396 Uncharacterized conser 71.2 3.5 7.6E-05 44.8 3.2 31 8-38 114-144 (389)
No 1
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.6e-32 Score=285.94 Aligned_cols=215 Identities=26% Similarity=0.336 Sum_probs=198.7
Q ss_pred ccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885 475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 554 (725)
Q Consensus 475 ~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H 554 (725)
...++++++.+.|+.++. .+++||++|.+++|.++ ....+.++++|
T Consensus 171 Q~gd~rPis~~~fS~ds~---------------~laT~swsG~~kvW~~~-------------------~~~~~~~l~gH 216 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSK---------------HLATGSWSGLVKVWSVP-------------------QCNLLQTLRGH 216 (459)
T ss_pred hccCCCcceeeEeecCCC---------------eEEEeecCCceeEeecC-------------------CcceeEEEecc
Confidence 345677788888998887 89999999999999432 33678899999
Q ss_pred CCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004885 555 TSKVESCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (725)
Q Consensus 555 ~~~V~~i~fSpd--g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~ 632 (725)
++.|.++.|+|. +..+|||+.||+|++|++++..++..+++|...|..++|+|+|++|+|+++|.+-++||++++. .
T Consensus 217 ~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~-E 295 (459)
T KOG0272|consen 217 TSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKS-E 295 (459)
T ss_pred ccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccch-h
Confidence 999999999996 5689999999999999999999999999999999999999999999999999999999999988 6
Q ss_pred eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004885 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDV 711 (725)
Q Consensus 633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl 711 (725)
+....||...|.+|+|+|+|. ++++|+.|..-+|||+++|+|+-.+.+ ...|.+|.|+|+|..|++|+.|++++|||+
T Consensus 296 lL~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDL 374 (459)
T KOG0272|consen 296 LLLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDL 374 (459)
T ss_pred hHhhcccccccceeEecCCCc-eeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeee
Confidence 788899999999999999998 889999999999999999999999986 577999999999999999999999999999
Q ss_pred CCCeEEEEEeCCCC
Q 004885 712 ETQVCRLKLQVSHS 725 (725)
Q Consensus 712 ~tg~~v~~l~GH~s 725 (725)
+..++++++.+|.+
T Consensus 375 R~r~~ly~ipAH~n 388 (459)
T KOG0272|consen 375 RMRSELYTIPAHSN 388 (459)
T ss_pred cccccceecccccc
Confidence 99999999999975
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=5.9e-31 Score=275.74 Aligned_cols=218 Identities=21% Similarity=0.284 Sum_probs=197.4
Q ss_pred cccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecC
Q 004885 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (725)
Q Consensus 474 l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 553 (725)
....+...+.++.|+|.. .+.-+++|+.|++|++|....+ .++..+.+
T Consensus 212 ~l~gH~~~v~~~~fhP~~-------------~~~~lat~s~Dgtvklw~~~~e-------------------~~l~~l~g 259 (459)
T KOG0272|consen 212 TLRGHTSRVGAAVFHPVD-------------SDLNLATASADGTVKLWKLSQE-------------------TPLQDLEG 259 (459)
T ss_pred EEeccccceeeEEEccCC-------------CccceeeeccCCceeeeccCCC-------------------cchhhhhc
Confidence 456677788899999953 2347899999999999943222 56778899
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004885 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l 633 (725)
|...|..++|+|+|++|+|+++|.+-++||++++..+...+||...|.+|+|+|||.+++||+.|..-||||++++. ++
T Consensus 260 H~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr-~i 338 (459)
T KOG0272|consen 260 HLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR-CI 338 (459)
T ss_pred chhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCc-EE
Confidence 99999999999999999999999999999999999998999999999999999999999999999999999999999 89
Q ss_pred EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEec-CCCEEEEEEcCCeEEEEEC
Q 004885 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQP-RLGRILAAAIENYISILDV 711 (725)
Q Consensus 634 ~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fsp-dg~~Lla~s~Dg~V~IwDl 711 (725)
..+.+|...|.+|+|+|+|- .++||+.|++++|||++..+++.++.. ..-|+.|+|+| .|.+|++++.|++++||.-
T Consensus 339 m~L~gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 339 MFLAGHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWST 417 (459)
T ss_pred EEecccccceeeEeECCCce-EEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecC
Confidence 99999999999999999975 888999999999999999999888876 56699999999 6678888999999999999
Q ss_pred CCCeEEEEEeCCCC
Q 004885 712 ETQVCRLKLQVSHS 725 (725)
Q Consensus 712 ~tg~~v~~l~GH~s 725 (725)
+++.++++|.||++
T Consensus 418 ~~~~~~ksLaGHe~ 431 (459)
T KOG0272|consen 418 RTWSPLKSLAGHEG 431 (459)
T ss_pred CCcccchhhcCCcc
Confidence 99999999999985
No 3
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=3.8e-29 Score=279.54 Aligned_cols=226 Identities=21% Similarity=0.386 Sum_probs=193.0
Q ss_pred cCCccCCCCcEEEEeeCCCcEEEecCCCCC--------CCCCcc---ccc-cccCCCceeeeEEEecCCCCCeEEEEEcC
Q 004885 498 APNQLTDMDRFVDDGSLDDNVESFLSPDDA--------DPRDRV---GRS-AEVGKGFTFTEFQLIPASTSKVESCHFSP 565 (725)
Q Consensus 498 ~s~~~~~~~~~lasGs~D~~V~vw~s~~~~--------~~~~~~---~~~-~~~~~~~~~~~~~~l~~H~~~V~~i~fSp 565 (725)
.+..+.+...++|.|-.|..|++|...... ...... ..+ .+..+...-...+++.+|+++|+.+.|+|
T Consensus 382 ~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP 461 (707)
T KOG0263|consen 382 TCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP 461 (707)
T ss_pred eeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecc
Confidence 333444445589999999999999665311 110000 000 11112222334556899999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEE
Q 004885 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645 (725)
Q Consensus 566 dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~s 645 (725)
+.++|++||+|++||+|.+++..++..+++|..+|+++.|+|-|-||||++.|++.++|..+... +++.|.+|-+.|.|
T Consensus 462 d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~-PlRifaghlsDV~c 540 (707)
T KOG0263|consen 462 DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK-PLRIFAGHLSDVDC 540 (707)
T ss_pred cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC-chhhhcccccccce
Confidence 99999999999999999999999999999999999999999999999999999999999999877 89999999999999
Q ss_pred EEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH 724 (725)
Q Consensus 646 l~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~ 724 (725)
+.|+|+.. ++++|+.|.+||+||+.+|..++.|.+ .++|++++|+|+|++|++|+.|+.|.|||+.+++.+..+.||.
T Consensus 541 v~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht 619 (707)
T KOG0263|consen 541 VSFHPNSN-YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHT 619 (707)
T ss_pred EEECCccc-ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhccc
Confidence 99999987 677999999999999999999999987 7889999999999999999999999999999999999999996
Q ss_pred C
Q 004885 725 S 725 (725)
Q Consensus 725 s 725 (725)
+
T Consensus 620 ~ 620 (707)
T KOG0263|consen 620 G 620 (707)
T ss_pred C
Confidence 4
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.4e-29 Score=259.40 Aligned_cols=211 Identities=26% Similarity=0.379 Sum_probs=182.8
Q ss_pred CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (725)
Q Consensus 477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~ 556 (725)
.+...+.++.|+|++. .+++|+-|.++|+| +-.+-.+..+.++|..
T Consensus 113 GH~e~Vl~~~fsp~g~---------------~l~tGsGD~TvR~W-------------------D~~TeTp~~t~KgH~~ 158 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGS---------------RLVTGSGDTTVRLW-------------------DLDTETPLFTCKGHKN 158 (480)
T ss_pred CCCCcEEEEEecCCCc---------------eEEecCCCceEEee-------------------ccCCCCcceeecCCcc
Confidence 3556788889999876 89999999999999 3444467788999999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-EEEeccCCCCeEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCC
Q 004885 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDTENPD 630 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~-i~~l~~H~~~V~~IafsP-----d~~~Lasgs~DgtIrvWDl~~~~ 630 (725)
.|.|++|+|||+.||+|+.||+|++||.+++.. .+.|.+|...|++++|.| ..++|++++.||.|+|||+..+.
T Consensus 159 WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~ 238 (480)
T KOG0271|consen 159 WVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT 238 (480)
T ss_pred EEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce
Confidence 999999999999999999999999999988765 468999999999999987 46799999999999999999887
Q ss_pred eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe------------------------------
Q 004885 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------------------------------ 680 (725)
Q Consensus 631 ~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~------------------------------ 680 (725)
++..+.+|+.+|+||+|--+| ++++++.|++|++|+...|.+.+.++
T Consensus 239 -~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~ 315 (480)
T KOG0271|consen 239 -CVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPK 315 (480)
T ss_pred -EEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCC
Confidence 899999999999999997553 78899999999999886543221111
Q ss_pred --------------------------------------------------cCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004885 681 --------------------------------------------------CQSGATQMRFQPRLGRILAAAIENYISILD 710 (725)
Q Consensus 681 --------------------------------------------------~~~~V~sv~fspdg~~Lla~s~Dg~V~IwD 710 (725)
|..-|+.+.|+||++++++++.|..|++||
T Consensus 316 ~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~ 395 (480)
T KOG0271|consen 316 SFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWD 395 (480)
T ss_pred ChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeee
Confidence 112378899999999999999999999999
Q ss_pred CCCCeEEEEEeCCC
Q 004885 711 VETQVCRLKLQVSH 724 (725)
Q Consensus 711 l~tg~~v~~l~GH~ 724 (725)
.++|+.+.+|+||-
T Consensus 396 g~tGk~lasfRGHv 409 (480)
T KOG0271|consen 396 GRTGKFLASFRGHV 409 (480)
T ss_pred CCCcchhhhhhhcc
Confidence 99999999999994
No 5
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=9e-29 Score=276.53 Aligned_cols=204 Identities=27% Similarity=0.403 Sum_probs=188.0
Q ss_pred ccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885 475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 554 (725)
Q Consensus 475 ~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H 554 (725)
...++.++-...|+|+.. ||.++|.|++||+| .-.++..+..+++|
T Consensus 447 L~GH~GPVyg~sFsPd~r---------------fLlScSED~svRLW-------------------sl~t~s~~V~y~GH 492 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRR---------------FLLSCSEDSSVRLW-------------------SLDTWSCLVIYKGH 492 (707)
T ss_pred eecCCCceeeeeeccccc---------------ceeeccCCcceeee-------------------ecccceeEEEecCC
Confidence 455666677777777665 99999999999999 44566788889999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE
Q 004885 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~ 634 (725)
..+|.++.|+|.|-+|||||.|++.++|..+...+++.+.+|-+.|.|+.|||+..|++||+.|.+||+||+.++. .++
T Consensus 493 ~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~-~VR 571 (707)
T KOG0263|consen 493 LAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN-SVR 571 (707)
T ss_pred CcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCc-EEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998 799
Q ss_pred EEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004885 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVET 713 (725)
Q Consensus 635 ~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~t 713 (725)
.|.||.++|.+|+|+|+|+ +|++|+.|+.|.|||+.+++.+..+.. .+.|.+|.|+.+|..|++++.|++|++||+..
T Consensus 572 iF~GH~~~V~al~~Sp~Gr-~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 572 IFTGHKGPVTALAFSPCGR-YLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EecCCCCceEEEEEcCCCc-eEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9999999999999999998 778999999999999999999888775 67799999999999999999999999999875
Q ss_pred C
Q 004885 714 Q 714 (725)
Q Consensus 714 g 714 (725)
-
T Consensus 651 ~ 651 (707)
T KOG0263|consen 651 V 651 (707)
T ss_pred h
Confidence 4
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=1.1e-27 Score=240.40 Aligned_cols=226 Identities=25% Similarity=0.368 Sum_probs=186.1
Q ss_pred ccccCCCCCeeEEEEecCCC-ccc------------cccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCcccccccc
Q 004885 473 TLQHNGASSKSLLMFGSDGM-GSL------------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEV 539 (725)
Q Consensus 473 ~l~~s~s~~~s~l~fs~dg~-~~l------------a~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~ 539 (725)
.+..+.+++++.+.|..... ..+ .+....+.....|..++++|+.+++|+...+
T Consensus 29 ~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g------------- 95 (315)
T KOG0279|consen 29 DILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG------------- 95 (315)
T ss_pred ceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC-------------
Confidence 34555666777777765433 111 1122223344458889999999999944332
Q ss_pred CCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccC--CCCeEEEEEcCC--CCEEEEE
Q 004885 540 GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPS--LSRLATS 615 (725)
Q Consensus 540 ~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H--~~~V~~IafsPd--~~~Lasg 615 (725)
+....|.+|...|.+++|++|.+.|++|+.|++|++||+.... ..++..+ ++.|.|++|+|+ ..+|+++
T Consensus 96 ------~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c-k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~ 168 (315)
T KOG0279|consen 96 ------ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC-KYTIHEDSHREWVSCVRFSPNESNPIIVSA 168 (315)
T ss_pred ------cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE-EEEEecCCCcCcEEEEEEcCCCCCcEEEEc
Confidence 5667889999999999999999999999999999999987544 3444333 789999999997 7899999
Q ss_pred eCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCC
Q 004885 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG 695 (725)
Q Consensus 616 s~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~ 695 (725)
+.|++|++||+++-+ ....+.+|.+.|+.+.++|||. ++++|+.||.+.+||++.++++..+.+...|.+++|+|+ +
T Consensus 169 s~DktvKvWnl~~~~-l~~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspn-r 245 (315)
T KOG0279|consen 169 SWDKTVKVWNLRNCQ-LRTTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPN-R 245 (315)
T ss_pred cCCceEEEEccCCcc-hhhccccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCC-c
Confidence 999999999999987 6788999999999999999998 888999999999999999999999999999999999998 6
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 696 RILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 696 ~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
+.+++..+..|+|||++++.++..|+
T Consensus 246 ywL~~at~~sIkIwdl~~~~~v~~l~ 271 (315)
T KOG0279|consen 246 YWLCAATATSIKIWDLESKAVVEELK 271 (315)
T ss_pred eeEeeccCCceEEEeccchhhhhhcc
Confidence 66777777789999999999988775
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.96 E-value=4e-27 Score=237.44 Aligned_cols=207 Identities=18% Similarity=0.301 Sum_probs=185.9
Q ss_pred CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004885 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (725)
Q Consensus 503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IW 582 (725)
.+...++++|+.|....+|...... ........+.+.+|++.+.||.|-+ ...|+|+|.|.+..+|
T Consensus 106 sPSg~~VAcGGLdN~Csiy~ls~~d-------------~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalW 171 (343)
T KOG0286|consen 106 SPSGNFVACGGLDNKCSIYPLSTRD-------------AEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALW 171 (343)
T ss_pred CCCCCeEEecCcCceeEEEeccccc-------------ccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEE
Confidence 3445599999999999999544221 1122345667899999999999987 5578999999999999
Q ss_pred ECCCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeC
Q 004885 583 CTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (725)
Q Consensus 583 dl~~~~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~ 661 (725)
|++++..+..|.+|.+.|.+++++| +++.+++|+.|++.+|||++.+. ++.+|.+|...|++|+|.|+|. -|++|++
T Consensus 172 Die~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~-c~qtF~ghesDINsv~ffP~G~-afatGSD 249 (343)
T KOG0286|consen 172 DIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ-CVQTFEGHESDINSVRFFPSGD-AFATGSD 249 (343)
T ss_pred EcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc-eeEeecccccccceEEEccCCC-eeeecCC
Confidence 9999999999999999999999999 89999999999999999999997 8999999999999999999987 6789999
Q ss_pred CCcEEEEECCCCeeEEEEec---CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885 662 NSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS 725 (725)
Q Consensus 662 Dg~I~IwDl~t~~~v~~~~~---~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s 725 (725)
|+++|+||++....+..|.+ -.+|++++|+..|++|++|..|.++.|||.-.++.+-.|.||++
T Consensus 250 D~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN 316 (343)
T KOG0286|consen 250 DATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN 316 (343)
T ss_pred CceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC
Confidence 99999999999999988886 46799999999999999999999999999999999999999985
No 8
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=8.7e-27 Score=263.40 Aligned_cols=216 Identities=26% Similarity=0.450 Sum_probs=190.5
Q ss_pred cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST 555 (725)
Q Consensus 476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~ 555 (725)
.....++.++.|+++|. ++++++.|+.+++|......+ .....+.+|.
T Consensus 156 ~~~~~sv~~~~fs~~g~---------------~l~~~~~~~~i~~~~~~~~~~-----------------~~~~~l~~h~ 203 (456)
T KOG0266|consen 156 GHECPSVTCVDFSPDGR---------------ALAAASSDGLIRIWKLEGIKS-----------------NLLRELSGHT 203 (456)
T ss_pred ccccCceEEEEEcCCCC---------------eEEEccCCCcEEEeecccccc-----------------hhhccccccc
Confidence 33466778888998887 899999999999995522210 2444558999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCT-ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl-~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~ 634 (725)
..|++++|+|+++++++++.|++|+|||+ ..+..++++++|...|++++|+|+++++++|+.|++|+|||+++++ ++.
T Consensus 204 ~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~-~~~ 282 (456)
T KOG0266|consen 204 RGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE-CVR 282 (456)
T ss_pred cceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe-EEE
Confidence 99999999999999999999999999999 5568999999999999999999999999999999999999999977 899
Q ss_pred EEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe--eEEEEec--CC-CeEEEEEecCCCEEEEEEcCCeEEEE
Q 004885 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKC--QS-GATQMRFQPRLGRILAAAIENYISIL 709 (725)
Q Consensus 635 ~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~--~v~~~~~--~~-~V~sv~fspdg~~Lla~s~Dg~V~Iw 709 (725)
.+.+|...|++++|++++. +|++++.|+.|+|||+.++. ++..+.. .. .+++++|+|++.++++++.|+.|++|
T Consensus 283 ~l~~hs~~is~~~f~~d~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w 361 (456)
T KOG0266|consen 283 KLKGHSDGISGLAFSPDGN-LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLW 361 (456)
T ss_pred eeeccCCceEEEEECCCCC-EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEE
Confidence 9999999999999999998 66677889999999999999 5566654 22 58999999999999999999999999
Q ss_pred ECCCCeEEEEEeCCCC
Q 004885 710 DVETQVCRLKLQVSHS 725 (725)
Q Consensus 710 Dl~tg~~v~~l~GH~s 725 (725)
|+..+.++..+.+|.+
T Consensus 362 ~l~~~~~~~~~~~~~~ 377 (456)
T KOG0266|consen 362 DLRSGKSVGTYTGHSN 377 (456)
T ss_pred EccCCcceeeecccCC
Confidence 9999999999999964
No 9
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.1e-27 Score=246.20 Aligned_cols=228 Identities=18% Similarity=0.311 Sum_probs=193.0
Q ss_pred CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCC-C--------------------------
Q 004885 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADP-R-------------------------- 530 (725)
Q Consensus 478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~-~-------------------------- 530 (725)
+.+=+.++.|+|||. .+++|+.|+.|++|+...+... +
T Consensus 156 H~~WVlcvawsPDgk---------------~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~l 220 (480)
T KOG0271|consen 156 HKNWVLCVAWSPDGK---------------KIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRL 220 (480)
T ss_pred CccEEEEEEECCCcc---------------hhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccce
Confidence 445577888888887 7888999999999975443211 0
Q ss_pred -----CccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEE
Q 004885 531 -----DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF 605 (725)
Q Consensus 531 -----~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~Iaf 605 (725)
+...++|+.. ...++.++.+|+..|+|++|--+ .+|++||.|++|++|+...+.+++++++|...|+.++.
T Consensus 221 as~skDg~vrIWd~~---~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lal 296 (480)
T KOG0271|consen 221 ASSSKDGSVRIWDTK---LGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLAL 296 (480)
T ss_pred ecccCCCCEEEEEcc---CceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeec
Confidence 1122333322 22567889999999999999633 48999999999999999999999999999999999988
Q ss_pred c-----------CCC-------------------------CEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEc
Q 004885 606 S-----------PSL-------------------------SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649 (725)
Q Consensus 606 s-----------Pd~-------------------------~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fs 649 (725)
+ |.+ .+|++|+.|.++.+|+....+.++....+|...|..+.|+
T Consensus 297 sTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fS 376 (480)
T KOG0271|consen 297 STDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFS 376 (480)
T ss_pred cchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEEC
Confidence 7 222 3599999999999999987777899999999999999999
Q ss_pred cCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS 725 (725)
Q Consensus 650 P~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s 725 (725)
||++ ++++++-|..|++||.++|+.+.+|.+ -..|+.|+|+.|.+.|++|+.|.+++|||+++.+....|.||..
T Consensus 377 Pd~r-~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~D 452 (480)
T KOG0271|consen 377 PDGR-YIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHAD 452 (480)
T ss_pred CCcc-EEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCc
Confidence 9998 778999999999999999999999995 67899999999999999999999999999999999999999963
No 10
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=1.8e-26 Score=244.79 Aligned_cols=210 Identities=19% Similarity=0.347 Sum_probs=187.2
Q ss_pred CCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCe
Q 004885 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV 558 (725)
Q Consensus 479 s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V 558 (725)
..+++++.|+.+|. +|++|+.||.+++|... ...+.++.-|.++|
T Consensus 235 nkdVT~L~Wn~~G~---------------~LatG~~~G~~riw~~~--------------------G~l~~tl~~HkgPI 279 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGT---------------LLATGSEDGEARIWNKD--------------------GNLISTLGQHKGPI 279 (524)
T ss_pred cCCcceEEecCCCC---------------eEEEeecCcEEEEEecC--------------------chhhhhhhccCCce
Confidence 34789999999998 99999999999999332 23456778899999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCe-----------------------------------------EEEEeccCC
Q 004885 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFT-----------------------------------------VKSTLEEHT 597 (725)
Q Consensus 559 ~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~-----------------------------------------~i~~l~~H~ 597 (725)
+++.|+.+|.+|++++.|+++.+||..++. ++.++.+|.
T Consensus 280 ~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~ 359 (524)
T KOG0273|consen 280 FSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHH 359 (524)
T ss_pred EEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeeccc
Confidence 999999999999999999999999985432 233456899
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCC--------CeEEEEEeCCCcEEEEE
Q 004885 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK--------EDLLCSCDNNSEIRYWS 669 (725)
Q Consensus 598 ~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g--------~~llaSgs~Dg~I~IwD 669 (725)
+.|.+|.|.|.+.+|++|+.|++++||...... +...+.+|...|..+.|+|+| ...+++++.|++|++||
T Consensus 360 g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~-~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwd 438 (524)
T KOG0273|consen 360 GEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN-SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWD 438 (524)
T ss_pred CceEEEEECCCCceEEEecCCCeeEeeecCCCc-chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEE
Confidence 999999999999999999999999999998877 789999999999999999975 34678999999999999
Q ss_pred CCCCeeEEEE-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885 670 INNGSCAGVF-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH 724 (725)
Q Consensus 670 l~t~~~v~~~-~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~ 724 (725)
+..+.++++| +|..+|.+++|+|+|+++++|+.||.|.||+.++++.++++.+-.
T Consensus 439 v~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~ 494 (524)
T KOG0273|consen 439 VESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG 494 (524)
T ss_pred ccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC
Confidence 9999999999 678999999999999999999999999999999999999988753
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.95 E-value=5.5e-26 Score=228.12 Aligned_cols=201 Identities=15% Similarity=0.218 Sum_probs=178.4
Q ss_pred cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004885 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (725)
Q Consensus 507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~ 586 (725)
.++.+++.|..+.+|....+ +......++.+++|+..|..+..++||++.++++.|+++++||+.+
T Consensus 29 ~~l~sasrDk~ii~W~L~~d--------------d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~ 94 (315)
T KOG0279|consen 29 DILVSASRDKTIIVWKLTSD--------------DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLAT 94 (315)
T ss_pred ceEEEcccceEEEEEEeccC--------------ccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecC
Confidence 47889999999999966554 2223356788999999999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecC--CCCeEEEEEccCC-CeEEEEEeCCC
Q 004885 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH--STTVMSLDFHPSK-EDLLCSCDNNS 663 (725)
Q Consensus 587 ~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h--~~~V~sl~fsP~g-~~llaSgs~Dg 663 (725)
++....|.+|...|.+++|++|.+.|++|+.|++|++|++... +..++..+ .+.|.||+|+|+. +-++++++.|+
T Consensus 95 g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~--ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dk 172 (315)
T KOG0279|consen 95 GESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV--CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDK 172 (315)
T ss_pred CcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc--EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCc
Confidence 9999999999999999999999999999999999999999764 44554443 7899999999995 44888999999
Q ss_pred cEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885 664 EIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVS 723 (725)
Q Consensus 664 ~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH 723 (725)
+|++||+++.+....+.+ .+.++.+.++|||..+++|+.||.+.+||++.++++.++.+.
T Consensus 173 tvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~ 233 (315)
T KOG0279|consen 173 TVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAF 233 (315)
T ss_pred eEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCC
Confidence 999999999988888876 566999999999999999999999999999999999988764
No 12
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=9e-26 Score=233.29 Aligned_cols=230 Identities=20% Similarity=0.323 Sum_probs=194.2
Q ss_pred CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCC--------------------------
Q 004885 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPR-------------------------- 530 (725)
Q Consensus 477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~-------------------------- 530 (725)
.+..+++.+.|+|+.. ++++++.|.+|++|+...+...+
T Consensus 106 g~r~~vt~v~~hp~~~---------------~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSs 170 (406)
T KOG0295|consen 106 GHRSSVTRVIFHPSEA---------------LVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSS 170 (406)
T ss_pred ccccceeeeeeccCce---------------EEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCC
Confidence 3445566666666554 66777778888888655442211
Q ss_pred CccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCC
Q 004885 531 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610 (725)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~ 610 (725)
+.....|+.. ..++.++.+.+|...|.+++|-|.|.+|++|+.|.+|++|++.++.++.+|.+|...|..|+.+-||.
T Consensus 171 Dl~~~LWd~~--~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt 248 (406)
T KOG0295|consen 171 DLSAKLWDFD--TFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT 248 (406)
T ss_pred ccchhheeHH--HHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCee
Confidence 1112222221 12456677889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccC--------------CCeEEEEEeCCCcEEEEECCCCeeE
Q 004885 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS--------------KEDLLCSCDNNSEIRYWSINNGSCA 676 (725)
Q Consensus 611 ~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~--------------g~~llaSgs~Dg~I~IwDl~t~~~v 676 (725)
++++|+.|-+|++|-+.++. |...+..|.-+|.+++|.|. +..++++++.|++|++||+.++.|+
T Consensus 249 i~As~s~dqtl~vW~~~t~~-~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL 327 (406)
T KOG0295|consen 249 IIASCSNDQTLRVWVVATKQ-CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL 327 (406)
T ss_pred EEEecCCCceEEEEEeccch-hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE
Confidence 99999999999999999987 78899999999999999873 2247889999999999999999999
Q ss_pred EEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885 677 GVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH 724 (725)
Q Consensus 677 ~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~ 724 (725)
.++.+ ..+|..++|+|.|+||+++..|++|+|||+++++|+++++.|.
T Consensus 328 ~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~ 376 (406)
T KOG0295|consen 328 FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHE 376 (406)
T ss_pred EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCc
Confidence 99987 6789999999999999999999999999999999999999886
No 13
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.94 E-value=2.1e-25 Score=220.68 Aligned_cols=177 Identities=18% Similarity=0.337 Sum_probs=156.5
Q ss_pred eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004885 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (725)
Q Consensus 546 ~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWD 625 (725)
.++.++++|+..|+++.|.-+|+++++||+||+++|||++...+-+.+. |..+|++|..+|+-..|++|..+|.|+|||
T Consensus 74 ~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWD 152 (311)
T KOG0315|consen 74 NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWD 152 (311)
T ss_pred CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEE
Confidence 3788999999999999999999999999999999999999977666665 779999999999999999999999999999
Q ss_pred CCCCC------------------------------------------------eeeEEEecCCCCeEEEEEccCCCeEEE
Q 004885 626 TENPD------------------------------------------------YSLRTFTGHSTTVMSLDFHPSKEDLLC 657 (725)
Q Consensus 626 l~~~~------------------------------------------------~~l~~~~~h~~~V~sl~fsP~g~~lla 657 (725)
+.+.. .++..|..|.+.+..+.++|+++ +|+
T Consensus 153 l~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k-~la 231 (311)
T KOG0315|consen 153 LGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK-YLA 231 (311)
T ss_pred ccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCc-EEE
Confidence 86431 12445667889999999999988 778
Q ss_pred EEeCCCcEEEEECCCC-eeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885 658 SCDNNSEIRYWSINNG-SCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH 724 (725)
Q Consensus 658 Sgs~Dg~I~IwDl~t~-~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~ 724 (725)
+|+.|.+++||++++. +....+++ ...+..++|+.|+.||++++.|+.+++||++.++.++.+.||+
T Consensus 232 t~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~ 300 (311)
T KOG0315|consen 232 TCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHH 300 (311)
T ss_pred eecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcc
Confidence 9999999999999987 45555555 5679999999999999999999999999999999999999996
No 14
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.94 E-value=9.7e-25 Score=220.26 Aligned_cols=213 Identities=23% Similarity=0.409 Sum_probs=191.5
Q ss_pred ccccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEec
Q 004885 473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP 552 (725)
Q Consensus 473 ~l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 552 (725)
.....+...+.++.|++|.. .++++|.||++-+| +.++...++.++
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr---------------~ivSaSqDGklIvW-------------------Ds~TtnK~haip 94 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSR---------------RIVSASQDGKLIVW-------------------DSFTTNKVHAIP 94 (343)
T ss_pred EEecccccceeeeEecCCcC---------------eEEeeccCCeEEEE-------------------EcccccceeEEe
Confidence 34556777889999999886 88999999999999 555556778888
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC------eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004885 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (725)
Q Consensus 553 ~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~------~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl 626 (725)
-.+..|..|+|+|.|+++|+|+-|....||++.+. ...+.+.+|++.+.|+.|-+ ...|+|++.|.++.+||+
T Consensus 95 l~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDi 173 (343)
T KOG0286|consen 95 LPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDI 173 (343)
T ss_pred cCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEc
Confidence 88899999999999999999999999999999754 45677899999999999987 567999999999999999
Q ss_pred CCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCe
Q 004885 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENY 705 (725)
Q Consensus 627 ~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~ 705 (725)
+++. .+..|.+|.+.|.+|++.|...+.|++|+.|+..++||++.+.|+.+|.+ ...|++|+|.|+|.-+++|+.|++
T Consensus 174 e~g~-~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t 252 (343)
T KOG0286|consen 174 ETGQ-QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT 252 (343)
T ss_pred ccce-EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCce
Confidence 9998 79999999999999999994444888999999999999999999999987 678999999999999999999999
Q ss_pred EEEEECCCCeEEEEEe
Q 004885 706 ISILDVETQVCRLKLQ 721 (725)
Q Consensus 706 V~IwDl~tg~~v~~l~ 721 (725)
.++||++....+..|.
T Consensus 253 cRlyDlRaD~~~a~ys 268 (343)
T KOG0286|consen 253 CRLYDLRADQELAVYS 268 (343)
T ss_pred eEEEeecCCcEEeeec
Confidence 9999999998887776
No 15
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=9.9e-25 Score=246.69 Aligned_cols=214 Identities=22% Similarity=0.367 Sum_probs=187.0
Q ss_pred cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST 555 (725)
Q Consensus 476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~ 555 (725)
..+...+..+.|++++. ++++|+.|.+|++|... .....++++++|.
T Consensus 200 ~~h~~~v~~~~fs~d~~---------------~l~s~s~D~tiriwd~~------------------~~~~~~~~l~gH~ 246 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDGS---------------YLLSGSDDKTLRIWDLK------------------DDGRNLKTLKGHS 246 (456)
T ss_pred cccccceeeeEECCCCc---------------EEEEecCCceEEEeecc------------------CCCeEEEEecCCC
Confidence 44666778888888776 99999999999999441 2235778899999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-eeE
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLR 634 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~-~l~ 634 (725)
..|+||+|+|++++|++|+.|++|+|||+++++++..+.+|...|++++|++++.+|++++.|+.|+|||+.++.. ++.
T Consensus 247 ~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~ 326 (456)
T KOG0266|consen 247 TYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLK 326 (456)
T ss_pred CceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999874 356
Q ss_pred EEecCCCC--eEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-C---CeEEEEEecCCCEEEEEEcCCeEEE
Q 004885 635 TFTGHSTT--VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-S---GATQMRFQPRLGRILAAAIENYISI 708 (725)
Q Consensus 635 ~~~~h~~~--V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~-~---~V~sv~fspdg~~Lla~s~Dg~V~I 708 (725)
.+.++... +++++|+|++.+ ++++..|+.|++||+..+.++..+..+ . .+.+...++.+.++++++.|+.|++
T Consensus 327 ~~~~~~~~~~~~~~~fsp~~~~-ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~ 405 (456)
T KOG0266|consen 327 LLSGAENSAPVTSVQFSPNGKY-LLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYV 405 (456)
T ss_pred cccCCCCCCceeEEEECCCCcE-EEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEE
Confidence 66666655 999999999995 457788999999999999999888762 2 3445556788899999999999999
Q ss_pred EECCCCeEEEEEeCC
Q 004885 709 LDVETQVCRLKLQVS 723 (725)
Q Consensus 709 wDl~tg~~v~~l~GH 723 (725)
||+.++..+..+.||
T Consensus 406 ~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 406 WDSSSGGILQRLEGH 420 (456)
T ss_pred EeCCccchhhhhcCC
Confidence 999999999999999
No 16
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.93 E-value=1.8e-26 Score=241.11 Aligned_cols=208 Identities=22% Similarity=0.430 Sum_probs=185.6
Q ss_pred CCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeE
Q 004885 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (725)
Q Consensus 480 ~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~ 559 (725)
..+..+.|.|+|. -|.+|+..|.+.+| .+..+....++.+|...|+
T Consensus 97 c~V~~v~WtPeGR---------------RLltgs~SGEFtLW-------------------Ng~~fnFEtilQaHDs~Vr 142 (464)
T KOG0284|consen 97 CPVNVVRWTPEGR---------------RLLTGSQSGEFTLW-------------------NGTSFNFETILQAHDSPVR 142 (464)
T ss_pred cceeeEEEcCCCc---------------eeEeecccccEEEe-------------------cCceeeHHHHhhhhcccce
Confidence 3567888999886 67889999999999 5566666677889999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEec
Q 004885 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 638 (725)
Q Consensus 560 ~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H-~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~ 638 (725)
++.|++++.++++|+.+|.|++|+..-.. +..+..| ...|++++|+|++..|++|+.|++|+|||....+ ..+.+.+
T Consensus 143 ~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~k-ee~vL~G 220 (464)
T KOG0284|consen 143 TMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK-EERVLRG 220 (464)
T ss_pred eEEEccCCCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCc-hhheecc
Confidence 99999999999999999999999975433 4444444 4999999999999999999999999999999887 6778899
Q ss_pred CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEE
Q 004885 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCR 717 (725)
Q Consensus 639 h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v 717 (725)
|...|.+++|+|... ++++++.|..|++||.++++|+.++.. ...|..+.|.+++.+|++++.|..+++||+++-+.+
T Consensus 221 HgwdVksvdWHP~kg-LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl 299 (464)
T KOG0284|consen 221 HGWDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL 299 (464)
T ss_pred CCCCcceeccCCccc-eeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH
Confidence 999999999999976 889999999999999999999998875 677999999999999999999999999999999999
Q ss_pred EEEeCCC
Q 004885 718 LKLQVSH 724 (725)
Q Consensus 718 ~~l~GH~ 724 (725)
.+++||.
T Consensus 300 ~~~r~Hk 306 (464)
T KOG0284|consen 300 FTYRGHK 306 (464)
T ss_pred HHhhcch
Confidence 9999986
No 17
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.8e-25 Score=215.46 Aligned_cols=210 Identities=19% Similarity=0.267 Sum_probs=189.3
Q ss_pred CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (725)
Q Consensus 478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (725)
+...+.++.|+.+|. |+.+++.|.+|++|+. .....++++.+|...
T Consensus 16 ~qgaV~avryN~dGn---------------Y~ltcGsdrtvrLWNp-------------------~rg~liktYsghG~E 61 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGN---------------YCLTCGSDRTVRLWNP-------------------LRGALIKTYSGHGHE 61 (307)
T ss_pred cccceEEEEEccCCC---------------EEEEcCCCceEEeecc-------------------cccceeeeecCCCce
Confidence 445678888888887 9999999999999933 333678899999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-eeeEEE
Q 004885 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTF 636 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~-~~l~~~ 636 (725)
|.+++.+.|...|++|+.|+.|.+||+.+++.++.|.+|.+.|+.|+|..+...+++|+.|.++++||.++.. .++..+
T Consensus 62 VlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQil 141 (307)
T KOG0316|consen 62 VLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQIL 141 (307)
T ss_pred eeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998754 367888
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 004885 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 716 (725)
Q Consensus 637 ~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~ 716 (725)
......|.+|..... .+++|+.||++|.||++.|.....+- ..+|++++|++++..+++++.|++|++.|-+||+.
T Consensus 142 dea~D~V~Si~v~~h---eIvaGS~DGtvRtydiR~G~l~sDy~-g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl 217 (307)
T KOG0316|consen 142 DEAKDGVSSIDVAEH---EIVAGSVDGTVRTYDIRKGTLSSDYF-GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKL 217 (307)
T ss_pred hhhcCceeEEEeccc---EEEeeccCCcEEEEEeecceeehhhc-CCcceeEEecCCCCEEEEeeccceeeecccchhHH
Confidence 888889999998743 67799999999999999998776654 47899999999999999999999999999999999
Q ss_pred EEEEeCCCC
Q 004885 717 RLKLQVSHS 725 (725)
Q Consensus 717 v~~l~GH~s 725 (725)
+..++||.+
T Consensus 218 L~sYkGhkn 226 (307)
T KOG0316|consen 218 LKSYKGHKN 226 (307)
T ss_pred HHHhccccc
Confidence 999999975
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.93 E-value=2.3e-24 Score=228.88 Aligned_cols=220 Identities=20% Similarity=0.315 Sum_probs=185.8
Q ss_pred cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCC-------CCccccccccC--------
Q 004885 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADP-------RDRVGRSAEVG-------- 540 (725)
Q Consensus 476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~-------~~~~~~~~~~~-------- 540 (725)
..+..++..+.|+-.|+ |+.+++.|+++.+|+...+... ...+-..|-..
T Consensus 273 ~~HkgPI~slKWnk~G~---------------yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~t 337 (524)
T KOG0273|consen 273 GQHKGPIFSLKWNKKGT---------------YILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSST 337 (524)
T ss_pred hccCCceEEEEEcCCCC---------------EEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCC
Confidence 34555677777877776 9999999999999977544210 00000001000
Q ss_pred -------CCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCC----
Q 004885 541 -------KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---- 609 (725)
Q Consensus 541 -------~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~---- 609 (725)
+--.-+++.++.+|.++|.++.|+|.+.+|++||.|++++||+.....+...+.+|+..|+.+.|+|.+
T Consensus 338 d~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~ 417 (524)
T KOG0273|consen 338 DGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTS 417 (524)
T ss_pred CceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccC
Confidence 001124677888999999999999999999999999999999999999999999999999999999954
Q ss_pred -----CEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCC
Q 004885 610 -----SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG 684 (725)
Q Consensus 610 -----~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~ 684 (725)
..+++++.|++|++||+..+. ++.+|..|..+|++|+|+|+|+ ++++|+.||.|.||++++++.++.+...+.
T Consensus 418 n~~~~~~l~sas~dstV~lwdv~~gv-~i~~f~kH~~pVysvafS~~g~-ylAsGs~dg~V~iws~~~~~l~~s~~~~~~ 495 (524)
T KOG0273|consen 418 NPNMNLMLASASFDSTVKLWDVESGV-PIHTLMKHQEPVYSVAFSPNGR-YLASGSLDGCVHIWSTKTGKLVKSYQGTGG 495 (524)
T ss_pred CCcCCceEEEeecCCeEEEEEccCCc-eeEeeccCCCceEEEEecCCCc-EEEecCCCCeeEeccccchheeEeecCCCe
Confidence 468999999999999999988 8999999999999999999998 678999999999999999999999999899
Q ss_pred eEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885 685 ATQMRFQPRLGRILAAAIENYISILDVE 712 (725)
Q Consensus 685 V~sv~fspdg~~Lla~s~Dg~V~IwDl~ 712 (725)
|..++|+.+|.+|.++..|+.|+|.|++
T Consensus 496 Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 496 IFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999999999999999999999999986
No 19
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=2.8e-23 Score=235.49 Aligned_cols=221 Identities=15% Similarity=0.171 Sum_probs=178.2
Q ss_pred cccCCCCCeeEEEEec-CCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEec
Q 004885 474 LQHNGASSKSLLMFGS-DGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP 552 (725)
Q Consensus 474 l~~s~s~~~s~l~fs~-dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 552 (725)
+...+...+..+.|+| ++. +|++|+.|++|++|........ ......+..+.
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~---------------~LaSgS~DgtIkIWdi~~~~~~------------~~~~~~l~~L~ 122 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQ---------------KLFTASEDGTIMGWGIPEEGLT------------QNISDPIVHLQ 122 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCC---------------EEEEEeCCCEEEEEecCCCccc------------cccCcceEEec
Confidence 3445667789999998 444 8999999999999976543110 01123466788
Q ss_pred CCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 004885 553 ASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (725)
Q Consensus 553 ~H~~~V~~i~fSpdg-~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~ 631 (725)
+|...|.+|+|+|++ ++|++|+.|++|+|||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|+|||++++.
T Consensus 123 gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~- 201 (493)
T PTZ00421 123 GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT- 201 (493)
T ss_pred CCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc-
Confidence 999999999999975 699999999999999999999999999999999999999999999999999999999999987
Q ss_pred eeEEEecCCCC-eEEEEEccCCCeEEEEE---eCCCcEEEEECCCCe-eEEEEec--CCCeEEEEEecCCCEEEEEE-cC
Q 004885 632 SLRTFTGHSTT-VMSLDFHPSKEDLLCSC---DNNSEIRYWSINNGS-CAGVFKC--QSGATQMRFQPRLGRILAAA-IE 703 (725)
Q Consensus 632 ~l~~~~~h~~~-V~sl~fsP~g~~llaSg---s~Dg~I~IwDl~t~~-~v~~~~~--~~~V~sv~fspdg~~Lla~s-~D 703 (725)
.+..+.+|.+. +..+.|.+++..++.+| +.|+.|++||+++.. ++..+.. ...+..+.|++++..|++++ .|
T Consensus 202 ~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgD 281 (493)
T PTZ00421 202 IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGE 281 (493)
T ss_pred EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCC
Confidence 67888888765 45788999887666544 247899999998754 3433332 34566678999999988887 49
Q ss_pred CeEEEEECCCCeEEEEEeC
Q 004885 704 NYISILDVETQVCRLKLQV 722 (725)
Q Consensus 704 g~V~IwDl~tg~~v~~l~G 722 (725)
+.|++||+++++++..+..
T Consensus 282 g~Iriwdl~~~~~~~~~~~ 300 (493)
T PTZ00421 282 GNIRCFELMNERLTFCSSY 300 (493)
T ss_pred CeEEEEEeeCCceEEEeec
Confidence 9999999999988876654
No 20
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.92 E-value=6.4e-25 Score=226.13 Aligned_cols=201 Identities=19% Similarity=0.302 Sum_probs=179.7
Q ss_pred CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004885 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (725)
Q Consensus 503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IW 582 (725)
++.+.++++|+.|++|++|+.. +.....++.+|...|..+++|+-..|+++|+.|+.|+.|
T Consensus 160 dP~n~wf~tgs~DrtikIwDla-------------------tg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 160 DPGNEWFATGSADRTIKIWDLA-------------------TGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred CCCceeEEecCCCceeEEEEcc-------------------cCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 4445699999999999999443 335677889999999999999999999999999999999
Q ss_pred ECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC
Q 004885 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (725)
Q Consensus 583 dl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D 662 (725)
|++..+.++.+.+|-..|+|++.+|..+.|+||+.|.++||||+++.. .+.++.||...|.+|.+.|... -+++|+.|
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~GH~~~V~~V~~~~~dp-qvit~S~D 298 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLSGHTNPVASVMCQPTDP-QVITGSHD 298 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-eEEEecCCCCcceeEEeecCCC-ceEEecCC
Confidence 999999999999999999999999999999999999999999999988 7999999999999999999877 45699999
Q ss_pred CcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885 663 SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS 725 (725)
Q Consensus 663 g~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s 725 (725)
++|++||++.|+...++.+ ...|.+++.+|.. ++++.++-..|+.|++-.|+.+..+.||.+
T Consensus 299 ~tvrlWDl~agkt~~tlt~hkksvral~lhP~e-~~fASas~dnik~w~~p~g~f~~nlsgh~~ 361 (460)
T KOG0285|consen 299 STVRLWDLRAGKTMITLTHHKKSVRALCLHPKE-NLFASASPDNIKQWKLPEGEFLQNLSGHNA 361 (460)
T ss_pred ceEEEeeeccCceeEeeecccceeeEEecCCch-hhhhccCCccceeccCCccchhhccccccc
Confidence 9999999999998888776 6679999999984 444555556799999999999999999863
No 21
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.92 E-value=1.5e-24 Score=223.42 Aligned_cols=181 Identities=22% Similarity=0.403 Sum_probs=170.9
Q ss_pred CceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 004885 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 621 (725)
Q Consensus 542 ~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtI 621 (725)
-..|+..+.+.+|.+.|.|+++.|...+|++|+.|++++|||+.++....++.+|...|..+++++-..|+++++.|+.|
T Consensus 138 HapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~V 217 (460)
T KOG0285|consen 138 HAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQV 217 (460)
T ss_pred cCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCee
Confidence 45677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEE
Q 004885 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAA 700 (725)
Q Consensus 622 rvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~ 700 (725)
++||++..+ .++.+.||-+.|.|++.+|.-+ ++++|+.|.++||||+++...+.++.+ ...|.+|.+.|-...+++|
T Consensus 218 KCwDLe~nk-vIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~ 295 (460)
T KOG0285|consen 218 KCWDLEYNK-VIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITG 295 (460)
T ss_pred EEEechhhh-hHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEe
Confidence 999999988 7999999999999999999976 788999999999999999999999985 7889999999988999999
Q ss_pred EcCCeEEEEECCCCeEEEEEeCCC
Q 004885 701 AIENYISILDVETQVCRLKLQVSH 724 (725)
Q Consensus 701 s~Dg~V~IwDl~tg~~v~~l~GH~ 724 (725)
+.|++|++||++.|+.+.++..|.
T Consensus 296 S~D~tvrlWDl~agkt~~tlt~hk 319 (460)
T KOG0285|consen 296 SHDSTVRLWDLRAGKTMITLTHHK 319 (460)
T ss_pred cCCceEEEeeeccCceeEeeeccc
Confidence 999999999999999888887774
No 22
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=1.4e-24 Score=240.69 Aligned_cols=205 Identities=22% Similarity=0.353 Sum_probs=178.6
Q ss_pred CCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEE
Q 004885 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLW 582 (725)
Q Consensus 504 ~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg-~~LaSgs~Dg~V~IW 582 (725)
..+.++++||.|++|++|...++ ......+....+|+..|.+++++..+ .+|+++|.|+++++|
T Consensus 375 ~~g~llat~sKD~svilWr~~~~---------------~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W 439 (775)
T KOG0319|consen 375 SSGDLLATGSKDKSVILWRLNNN---------------CSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLW 439 (775)
T ss_pred ccCcEEEEecCCceEEEEEecCC---------------cchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEe
Confidence 44469999999999999965222 22334455667999999999998754 489999999999999
Q ss_pred ECCCCeE-----E----EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCC
Q 004885 583 CTESFTV-----K----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 653 (725)
Q Consensus 583 dl~~~~~-----i----~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~ 653 (725)
++...+. + .+...|...|+|++++|+.++|+||+.|++.+||+++... ...++.+|...|++|.|+|...
T Consensus 440 ~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~-l~~vLsGH~RGvw~V~Fs~~dq 518 (775)
T KOG0319|consen 440 DLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR-LLGVLSGHTRGVWCVSFSKNDQ 518 (775)
T ss_pred cCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce-EEEEeeCCccceEEEEeccccc
Confidence 9865221 1 1335799999999999999999999999999999999766 7899999999999999999966
Q ss_pred eEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885 654 DLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS 725 (725)
Q Consensus 654 ~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s 725 (725)
++++|+.|++|+||.+.+++|+.+|++ ...|..+.|-.++..|++++.||.|+||++++++|+.+|.+|.+
T Consensus 519 -~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~D 590 (775)
T KOG0319|consen 519 -LLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHND 590 (775)
T ss_pred -eeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccc
Confidence 889999999999999999999999995 77899999999999999999999999999999999999999974
No 23
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.92 E-value=9.1e-24 Score=213.99 Aligned_cols=212 Identities=17% Similarity=0.295 Sum_probs=183.2
Q ss_pred CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (725)
Q Consensus 477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~ 556 (725)
.+...+..+.|+|+|. ++++|+.|..|.+|....+ .+.+..+++|++
T Consensus 45 gh~geI~~~~F~P~gs---------------~~aSgG~Dr~I~LWnv~gd------------------ceN~~~lkgHsg 91 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGS---------------CFASGGSDRAIVLWNVYGD------------------CENFWVLKGHSG 91 (338)
T ss_pred CCcceEEEEEECCCCC---------------eEeecCCcceEEEEecccc------------------ccceeeeccccc
Confidence 3445678889999887 9999999999999954332 134556779999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeEE
Q 004885 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRT 635 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~~l~~ 635 (725)
+|..+.|.+|++.|++|+.|++|+.||++++++++.+++|...|+.+.-+. .-.++.+++.|++++|||+++.. ++.+
T Consensus 92 AVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-~~~t 170 (338)
T KOG0265|consen 92 AVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-AIKT 170 (338)
T ss_pred eeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc-hhhc
Confidence 999999999999999999999999999999999999999999999988333 23467888999999999999877 6777
Q ss_pred EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ 714 (725)
Q Consensus 636 ~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg 714 (725)
+. ....++++.|...+..++ +|+-|+.|++||++...++..+.+ ...|+.|..+++|.++++-+.|++|++||++..
T Consensus 171 ~~-~kyqltAv~f~d~s~qv~-sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~ 248 (338)
T KOG0265|consen 171 FE-NKYQLTAVGFKDTSDQVI-SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPF 248 (338)
T ss_pred cc-cceeEEEEEeccccccee-eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEeccc
Confidence 64 346799999999888554 889999999999999999999987 678999999999999999999999999999864
Q ss_pred ----eEEEEEeCCC
Q 004885 715 ----VCRLKLQVSH 724 (725)
Q Consensus 715 ----~~v~~l~GH~ 724 (725)
+|+..|.||.
T Consensus 249 ~p~~R~v~if~g~~ 262 (338)
T KOG0265|consen 249 APSQRCVKIFQGHI 262 (338)
T ss_pred CCCCceEEEeecch
Confidence 7899999884
No 24
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=2.3e-23 Score=231.13 Aligned_cols=213 Identities=20% Similarity=0.345 Sum_probs=187.7
Q ss_pred cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST 555 (725)
Q Consensus 476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~ 555 (725)
..+....+++.|+|||. ++++|+.|++|++|+...+ -++.++..|+
T Consensus 347 QgH~~~i~~l~YSpDgq---------------~iaTG~eDgKVKvWn~~Sg-------------------fC~vTFteHt 392 (893)
T KOG0291|consen 347 QGHSDRITSLAYSPDGQ---------------LIATGAEDGKVKVWNTQSG-------------------FCFVTFTEHT 392 (893)
T ss_pred cccccceeeEEECCCCc---------------EEEeccCCCcEEEEeccCc-------------------eEEEEeccCC
Confidence 34566778888888887 9999999999999944333 4678899999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCC-CCeEEEEEcCCCCEEEEEeCCC-eEEEEECCCCCeee
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADR-TVRVWDTENPDYSL 633 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~-~~V~~IafsPd~~~Lasgs~Dg-tIrvWDl~~~~~~l 633 (725)
..|+.+.|+..++.++++|-||+|+.||+...+..++|.... ....|++.+|.|..++.|+.|. .|.||++.++. .+
T Consensus 393 s~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq-ll 471 (893)
T KOG0291|consen 393 SGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ-LL 471 (893)
T ss_pred CceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe-ee
Confidence 999999999999999999999999999999999999887532 4467999999999999999887 69999999998 79
Q ss_pred EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC-CeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE 712 (725)
Q Consensus 634 ~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t-~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~ 712 (725)
..+.||.++|.+++|+|.+. +|++++.|.+||+||+-. ...+.++.....+..+.|.|+|+.|++++.||.|.+||.+
T Consensus 472 DiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 472 DILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIK 550 (893)
T ss_pred ehhcCCCCcceeeEEccccC-eEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhh
Confidence 99999999999999999988 889999999999999864 3466777778899999999999999999999999999999
Q ss_pred CCeEEEEEeCCC
Q 004885 713 TQVCRLKLQVSH 724 (725)
Q Consensus 713 tg~~v~~l~GH~ 724 (725)
.+..+.++.|..
T Consensus 551 ~~~q~~~Idgrk 562 (893)
T KOG0291|consen 551 EAVQVGSIDGRK 562 (893)
T ss_pred hceeeccccchh
Confidence 988887777643
No 25
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.92 E-value=4.6e-25 Score=230.68 Aligned_cols=213 Identities=16% Similarity=0.285 Sum_probs=186.6
Q ss_pred cccccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEe
Q 004885 472 PTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI 551 (725)
Q Consensus 472 ~~l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l 551 (725)
..+..++...++++.|+.++. ++++|..++.|++|. .....++.+
T Consensus 131 EtilQaHDs~Vr~m~ws~~g~---------------wmiSgD~gG~iKyWq--------------------pnmnnVk~~ 175 (464)
T KOG0284|consen 131 ETILQAHDSPVRTMKWSHNGT---------------WMISGDKGGMIKYWQ--------------------PNMNNVKII 175 (464)
T ss_pred HHHhhhhcccceeEEEccCCC---------------EEEEcCCCceEEecc--------------------cchhhhHHh
Confidence 356677888999999999887 999999999999992 223445555
Q ss_pred cCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004885 552 PAST-SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (725)
Q Consensus 552 ~~H~-~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~ 630 (725)
.+|. ..|+|++|+|+...|++|+.|++|+|||....+....+.+|.-.|.+++|||...+|++++.|..|++||.+++.
T Consensus 176 ~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~ 255 (464)
T KOG0284|consen 176 QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS 255 (464)
T ss_pred hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc
Confidence 5655 899999999999999999999999999999988889999999999999999999999999999999999999998
Q ss_pred eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCE-EEEEEcCCeEEE
Q 004885 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGR-ILAAAIENYISI 708 (725)
Q Consensus 631 ~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~-Lla~s~Dg~V~I 708 (725)
|+.++.+|+..|..+.|+|+++ +|++++.|..+++||+++-+.+.+++. ...|+++.|+|-... |.+++.||.|..
T Consensus 256 -cl~tlh~HKntVl~~~f~~n~N-~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh 333 (464)
T KOG0284|consen 256 -CLATLHGHKNTVLAVKFNPNGN-WLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVH 333 (464)
T ss_pred -hhhhhhhccceEEEEEEcCCCC-eeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEE
Confidence 8999999999999999999996 777999999999999998888888884 778999999997665 556677999999
Q ss_pred EECCCCeEEEEEe
Q 004885 709 LDVETQVCRLKLQ 721 (725)
Q Consensus 709 wDl~tg~~v~~l~ 721 (725)
|.+...+.+-.++
T Consensus 334 ~~v~~~~p~~~i~ 346 (464)
T KOG0284|consen 334 WVVGLEEPLGEIP 346 (464)
T ss_pred EeccccccccCCC
Confidence 9998555554443
No 26
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.92 E-value=3e-25 Score=227.52 Aligned_cols=189 Identities=21% Similarity=0.411 Sum_probs=168.9
Q ss_pred EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004885 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 587 (725)
Q Consensus 508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~ 587 (725)
.+++|..|.+|++| +..++..+..+.+|++.|.|+.| |.+.|++|+.|.+|+|||+.++
T Consensus 209 kiVSGlrDnTikiW-------------------D~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 209 KIVSGLRDNTIKIW-------------------DKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred hhhcccccCceEEe-------------------ccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCC
Confidence 67899999999999 44555677888999999999999 6789999999999999999999
Q ss_pred eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcE
Q 004885 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (725)
Q Consensus 588 ~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~--~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I 665 (725)
+++.++-.|...|..+.|+ ..+++||+.|.+|.|||+..+. .+.+.+.||...|+.|.|+.. ++++++.|.+|
T Consensus 268 e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k---yIVsASgDRTi 342 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGDRTI 342 (499)
T ss_pred chhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc---eEEEecCCceE
Confidence 9999999999999999997 4689999999999999998876 234667899999999999854 78899999999
Q ss_pred EEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885 666 RYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH 724 (725)
Q Consensus 666 ~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~ 724 (725)
++|++.++++++++.+ ..+|.|+.+ .++.+++|++|++|++||++.|.|++.++||+
T Consensus 343 kvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHE 400 (499)
T KOG0281|consen 343 KVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHE 400 (499)
T ss_pred EEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchH
Confidence 9999999999999986 566777765 46789999999999999999999999999996
No 27
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=4.3e-24 Score=232.60 Aligned_cols=201 Identities=22% Similarity=0.381 Sum_probs=180.0
Q ss_pred CCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 004885 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 578 (725)
Q Consensus 499 s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~ 578 (725)
...+-....++++|+.|..|++| .-.+++.++.+++|.+.|+||+.+|.-.+++++|.|-+
T Consensus 60 a~kfiaRknWiv~GsDD~~IrVf-------------------nynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~ 120 (794)
T KOG0276|consen 60 AAKFIARKNWIVTGSDDMQIRVF-------------------NYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMT 120 (794)
T ss_pred hheeeeccceEEEecCCceEEEE-------------------ecccceeeEEeeccccceeeeeecCCCCeEEecCCccE
Confidence 33445556789999999999999 44456789999999999999999999999999999999
Q ss_pred EEEEECCC-CeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCC-eE
Q 004885 579 AVLWCTES-FTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-DL 655 (725)
Q Consensus 579 V~IWdl~~-~~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~-~l 655 (725)
|++||.+. ..+..+|++|+..|++|+|.| |.+.+++++-|++|+||.+..+. +..++.+|...|+||+|-+.|. -+
T Consensus 121 iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~-~nfTl~gHekGVN~Vdyy~~gdkpy 199 (794)
T KOG0276|consen 121 IKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH-PNFTLEGHEKGVNCVDYYTGGDKPY 199 (794)
T ss_pred EEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC-CceeeeccccCcceEEeccCCCcce
Confidence 99999976 678899999999999999999 67899999999999999999988 8999999999999999988653 26
Q ss_pred EEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 004885 656 LCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 719 (725)
Q Consensus 656 laSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~ 719 (725)
+++|++|.+|+|||..+..|+.++++ ...|..++|+|.-..+++|+.||+|+||+..|.+...+
T Consensus 200 lIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~t 264 (794)
T KOG0276|consen 200 LISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKT 264 (794)
T ss_pred EEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhh
Confidence 77999999999999999999999996 66799999999999999999999999999888754443
No 28
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1e-22 Score=204.01 Aligned_cols=202 Identities=23% Similarity=0.393 Sum_probs=171.7
Q ss_pred CeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEe-cCCCCCeE
Q 004885 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PASTSKVE 559 (725)
Q Consensus 481 ~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~H~~~V~ 559 (725)
.+..++|+|-. +.++++|+.|+.|++|.... +.++.....+ .+|+..|+
T Consensus 16 r~W~~awhp~~--------------g~ilAscg~Dk~vriw~~~~----------------~~s~~ck~vld~~hkrsVR 65 (312)
T KOG0645|consen 16 RVWSVAWHPGK--------------GVILASCGTDKAVRIWSTSS----------------GDSWTCKTVLDDGHKRSVR 65 (312)
T ss_pred cEEEEEeccCC--------------ceEEEeecCCceEEEEecCC----------------CCcEEEEEeccccchheee
Confidence 46778888841 23899999999999995432 1223444333 47999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECC--CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--eeeEE
Q 004885 560 SCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRT 635 (725)
Q Consensus 560 ~i~fSpdg~~LaSgs~Dg~V~IWdl~--~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~--~~l~~ 635 (725)
.|+|+|.|++||+||+|.++.||.-. +.+++.++++|...|.|++|+++|.+||||+.|+.|-||.+.... .++..
T Consensus 66 svAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aV 145 (312)
T KOG0645|consen 66 SVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAV 145 (312)
T ss_pred eeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEee
Confidence 99999999999999999999999765 367899999999999999999999999999999999999998433 47788
Q ss_pred EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC---CCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004885 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDV 711 (725)
Q Consensus 636 ~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~---t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl 711 (725)
+.+|...|..+.|+|... +|++|+.|.+|++|+-. ...|+.++.. ...|.+++|++.|..|++++.|++|+||-+
T Consensus 146 L~~HtqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 146 LQEHTQDVKHVIWHPTED-LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRL 224 (312)
T ss_pred eccccccccEEEEcCCcc-eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeee
Confidence 999999999999999866 89999999999999876 3467788876 458999999999999999999999999985
Q ss_pred CC
Q 004885 712 ET 713 (725)
Q Consensus 712 ~t 713 (725)
.+
T Consensus 225 ~~ 226 (312)
T KOG0645|consen 225 YT 226 (312)
T ss_pred cc
Confidence 53
No 29
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.91 E-value=1.3e-24 Score=220.91 Aligned_cols=216 Identities=22% Similarity=0.308 Sum_probs=184.6
Q ss_pred CeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEE
Q 004885 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560 (725)
Q Consensus 481 ~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~ 560 (725)
-+.+..|+|||. |+++|+.||-|++|+...+.-.++... .--..+--|..+|.|
T Consensus 215 h~EcA~FSPDgq---------------yLvsgSvDGFiEVWny~~GKlrKDLkY-----------QAqd~fMMmd~aVlc 268 (508)
T KOG0275|consen 215 HVECARFSPDGQ---------------YLVSGSVDGFIEVWNYTTGKLRKDLKY-----------QAQDNFMMMDDAVLC 268 (508)
T ss_pred chhheeeCCCCc---------------eEeeccccceeeeehhccchhhhhhhh-----------hhhcceeecccceEE
Confidence 456778999998 999999999999997766643332222 222334457788999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecC
Q 004885 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639 (725)
Q Consensus 561 i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~-~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h 639 (725)
+.||.|...||+|+.||+|+||.+.++.|++.|. .|+..|+|+.|+.|+..+++++.|.++||.-+.+++ ++..|.+|
T Consensus 269 i~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK-~LKEfrGH 347 (508)
T KOG0275|consen 269 ISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK-CLKEFRGH 347 (508)
T ss_pred EeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch-hHHHhcCc
Confidence 9999999999999999999999999999999996 899999999999999999999999999999999998 89999999
Q ss_pred CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--------------------------------------
Q 004885 640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------------------------------------- 681 (725)
Q Consensus 640 ~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-------------------------------------- 681 (725)
.+.|+.+.|.++|.++ ++++.||+|+||+.++.+|+.+|+.
T Consensus 348 sSyvn~a~ft~dG~~i-isaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv 426 (508)
T KOG0275|consen 348 SSYVNEATFTDDGHHI-ISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV 426 (508)
T ss_pred cccccceEEcCCCCeE-EEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceE
Confidence 9999999999999955 5999999999999998777655541
Q ss_pred ----------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885 682 ----------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH 724 (725)
Q Consensus 682 ----------~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~ 724 (725)
.+...+++.+|.|.++++.+.|+.++.|.+.+|+..+++.-|+
T Consensus 427 VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE 479 (508)
T KOG0275|consen 427 VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE 479 (508)
T ss_pred EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc
Confidence 1223456788999999999999999999999999998888775
No 30
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.91 E-value=7.6e-24 Score=214.78 Aligned_cols=230 Identities=15% Similarity=0.229 Sum_probs=187.9
Q ss_pred ccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885 475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 554 (725)
Q Consensus 475 ~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H 554 (725)
.-++...+.+-.|++||. ++++|+.|..|++++...--... ....+...........++++..|
T Consensus 108 lt~HK~~cR~aafs~DG~---------------lvATGsaD~SIKildvermlaks-~~~em~~~~~qa~hPvIRTlYDH 171 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGS---------------LVATGSADASIKILDVERMLAKS-KPKEMISGDTQARHPVIRTLYDH 171 (430)
T ss_pred EeecccceeeeeeCCCCc---------------EEEccCCcceEEEeehhhhhhhc-chhhhccCCcccCCceEeehhhc
Confidence 344556778889999998 99999999999999554221110 11122222222334578899999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE---EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 004885 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK---STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i---~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~ 631 (725)
.+.|+++.|+|...+|++|+.|++|++||+...... ++|. ...+|.+|.|||.|.+|++|..-.++++||+++..
T Consensus 172 ~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q- 249 (430)
T KOG0640|consen 172 VDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ- 249 (430)
T ss_pred cCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEEEecCCCceeEEecccee-
Confidence 999999999999999999999999999999754332 2332 35789999999999999999999999999999876
Q ss_pred eeEE---EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeEEEEEecCCCEEEEEEcCCe
Q 004885 632 SLRT---FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENY 705 (725)
Q Consensus 632 ~l~~---~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~---~~~V~sv~fspdg~~Lla~s~Dg~ 705 (725)
|... -..|.+.|++|.+++.++ ++++++.||.|++||--.++|+.++.. ...|.+..|..+++|+++.+.|..
T Consensus 250 cfvsanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~ 328 (430)
T KOG0640|consen 250 CFVSANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST 328 (430)
T ss_pred EeeecCcccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce
Confidence 3332 246889999999999988 888999999999999999999999974 556999999999999999999999
Q ss_pred EEEEECCCCeEEEEEeCC
Q 004885 706 ISILDVETQVCRLKLQVS 723 (725)
Q Consensus 706 V~IwDl~tg~~v~~l~GH 723 (725)
|++|.+.+++++.++.|.
T Consensus 329 vkLWEi~t~R~l~~YtGA 346 (430)
T KOG0640|consen 329 VKLWEISTGRMLKEYTGA 346 (430)
T ss_pred eeeeeecCCceEEEEecC
Confidence 999999999999999875
No 31
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.91 E-value=1.2e-23 Score=233.23 Aligned_cols=229 Identities=23% Similarity=0.334 Sum_probs=190.9
Q ss_pred ccccCCCCCeeEEEEecCCCc----ccc--------ccCCc-cCCCCcEEEEeeCCCcEEEecCCCCCCCCCcccccccc
Q 004885 473 TLQHNGASSKSLLMFGSDGMG----SLT--------SAPNQ-LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEV 539 (725)
Q Consensus 473 ~l~~s~s~~~s~l~fs~dg~~----~la--------~~s~~-~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~ 539 (725)
.+..+++.+++++.|..+... +++ +.... -.....|++++|.|+++++|..+...+...
T Consensus 378 ~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~-------- 449 (775)
T KOG0319|consen 378 DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF-------- 449 (775)
T ss_pred cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc--------
Confidence 366778899999999653210 000 00011 134457999999999999997666322111
Q ss_pred CCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 004885 540 GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (725)
Q Consensus 540 ~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dg 619 (725)
...+....+...|...|+|++++|+.++|||||.|++++||+++......++.+|+..|.||.|+|.+..++|+|.|+
T Consensus 450 --~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~ 527 (775)
T KOG0319|consen 450 --PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDK 527 (775)
T ss_pred --cceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCc
Confidence 122222334568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEE
Q 004885 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRIL 698 (725)
Q Consensus 620 tIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Ll 698 (725)
+|+||.+.+.. |+.+|.||...|..+.|-.++. .|++|+.||.|++|+++++.|+.++.. ...|.+++.++....++
T Consensus 528 TvKIW~is~fS-ClkT~eGH~~aVlra~F~~~~~-qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~ 605 (775)
T KOG0319|consen 528 TVKIWSISTFS-CLKTFEGHTSAVLRASFIRNGK-QLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFV 605 (775)
T ss_pred eEEEEEeccce-eeeeecCccceeEeeeeeeCCc-EEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeE
Confidence 99999999988 9999999999999999999988 666999999999999999999999986 77899999999999999
Q ss_pred EEEcCCeEEEEECCC
Q 004885 699 AAAIENYISILDVET 713 (725)
Q Consensus 699 a~s~Dg~V~IwDl~t 713 (725)
+|+.||.|.+|.=.|
T Consensus 606 tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 606 TGGGDGRIIFWKDVT 620 (775)
T ss_pred ecCCCeEEEEeecCc
Confidence 999999999996433
No 32
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.5e-23 Score=236.73 Aligned_cols=229 Identities=16% Similarity=0.216 Sum_probs=184.5
Q ss_pred CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCC---------------------------
Q 004885 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADP--------------------------- 529 (725)
Q Consensus 477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~--------------------------- 529 (725)
.+...+.++.|++||. |||+|+.|+.|+||...+.+..
T Consensus 265 ah~gaIw~mKFS~DGK---------------yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~ 329 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGK---------------YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSE 329 (712)
T ss_pred ccCCcEEEEEeCCCCc---------------eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccc
Confidence 5667889999999998 9999999999999976651100
Q ss_pred -----CCcc--------c-cccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc
Q 004885 530 -----RDRV--------G-RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE 595 (725)
Q Consensus 530 -----~~~~--------~-~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~ 595 (725)
+... . ......-.+.-++++.++||.+.|.+|.||. ..+|+++|.|++|++|++...+|+++|.
T Consensus 330 ~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~- 407 (712)
T KOG0283|consen 330 EKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS- 407 (712)
T ss_pred ccccccccccccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-
Confidence 0000 0 0000011233456788999999999999995 5689999999999999999999999996
Q ss_pred CCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe
Q 004885 596 HTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674 (725)
Q Consensus 596 H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~ 674 (725)
|...|+||+|+| |.+||++|+-|+.||||++.... +........-|++++|.|+|. ..+.|+.+|.+++|+.+..+
T Consensus 408 HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~--Vv~W~Dl~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 408 HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK--VVDWNDLRDLITAVCYSPDGK-GAVIGTFNGYCRFYDTEGLK 484 (712)
T ss_pred cCCeeEEEEecccCCCcEeecccccceEEeecCcCe--eEeehhhhhhheeEEeccCCc-eEEEEEeccEEEEEEccCCe
Confidence 999999999999 78999999999999999998766 444444447899999999998 55689999999999999877
Q ss_pred eEEEEec---------CCCeEEEEEecCCC-EEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885 675 CAGVFKC---------QSGATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQVSHS 725 (725)
Q Consensus 675 ~v~~~~~---------~~~V~sv~fspdg~-~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s 725 (725)
.+..+.. +..|+.+.|.|... .|++++.|..|+|||+++-.+++.|+|+++
T Consensus 485 ~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n 545 (712)
T KOG0283|consen 485 LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN 545 (712)
T ss_pred EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccccc
Confidence 6655431 23699999987543 588999999999999999999999998764
No 33
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.91 E-value=1.2e-23 Score=213.19 Aligned_cols=179 Identities=24% Similarity=0.435 Sum_probs=167.0
Q ss_pred eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004885 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (725)
Q Consensus 546 ~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~-~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvW 624 (725)
.++..+.+|.+.|+++.|+|+|.+||+|+.|..|.+|++. ..+-..++++|+++|+.+.|.+|+..|++++.|++|+.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 3455678999999999999999999999999999999964 355667889999999999999999999999999999999
Q ss_pred ECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCC
Q 004885 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN 704 (725)
Q Consensus 625 Dl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg 704 (725)
|+++++ +++.+++|...|.+++-+..|..++++++.|+++++||+++..++.+++....++++.|...+..+++|+-|+
T Consensus 118 D~~tG~-~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 118 DAETGK-RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred ecccce-eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccC
Confidence 999998 8999999999999999777888899999999999999999999999998888999999999999999999999
Q ss_pred eEEEEECCCCeEEEEEeCCCC
Q 004885 705 YISILDVETQVCRLKLQVSHS 725 (725)
Q Consensus 705 ~V~IwDl~tg~~v~~l~GH~s 725 (725)
.|++||++.+.+.+.+.||..
T Consensus 197 ~ikvWd~r~~d~~~~lsGh~D 217 (338)
T KOG0265|consen 197 DIKVWDLRKNDGLYTLSGHAD 217 (338)
T ss_pred ceeeeccccCcceEEeecccC
Confidence 999999999999999999963
No 34
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.6e-23 Score=228.17 Aligned_cols=214 Identities=20% Similarity=0.305 Sum_probs=193.9
Q ss_pred CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (725)
Q Consensus 478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (725)
.+..+.++.|+|... ++.++=..|.|.+|+. .+-..++.+.-..-+
T Consensus 12 rSdRVKsVd~HPteP---------------w~la~LynG~V~IWny-------------------etqtmVksfeV~~~P 57 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEP---------------WILAALYNGDVQIWNY-------------------ETQTMVKSFEVSEVP 57 (794)
T ss_pred cCCceeeeecCCCCc---------------eEEEeeecCeeEEEec-------------------ccceeeeeeeecccc
Confidence 555667777777665 8888889999999933 333566677777788
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEe
Q 004885 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~ 637 (725)
|+++.|-...+++++|+.|..|+||+..+++.+..|+.|...|.||+.||...+++|++.|-+|++||.++.-.|..+|.
T Consensus 58 vRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfe 137 (794)
T KOG0276|consen 58 VRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFE 137 (794)
T ss_pred hhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEc
Confidence 99999999899999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCC--CEEEEEEcCCeEEEEECCCC
Q 004885 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRL--GRILAAAIENYISILDVETQ 714 (725)
Q Consensus 638 ~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg--~~Lla~s~Dg~V~IwDl~tg 714 (725)
||...|++|+|.|.....|++|+-|++|+||.+....+..++++ ..+|++|+|-+.| .+|++|+.|.+|+|||..|.
T Consensus 138 GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk 217 (794)
T KOG0276|consen 138 GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK 217 (794)
T ss_pred CcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH
Confidence 99999999999999999999999999999999999999999986 6789999998764 49999999999999999999
Q ss_pred eEEEEEeCCCC
Q 004885 715 VCRLKLQVSHS 725 (725)
Q Consensus 715 ~~v~~l~GH~s 725 (725)
.|+.+|+||..
T Consensus 218 ~CV~TLeGHt~ 228 (794)
T KOG0276|consen 218 SCVQTLEGHTN 228 (794)
T ss_pred HHHHHhhcccc
Confidence 99999999963
No 35
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.91 E-value=3.4e-22 Score=204.04 Aligned_cols=212 Identities=27% Similarity=0.480 Sum_probs=184.8
Q ss_pred CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (725)
Q Consensus 477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~ 556 (725)
.+...+.++.|++++. ++++++.|+.|.+|..... .....+..|..
T Consensus 7 ~h~~~i~~~~~~~~~~---------------~l~~~~~~g~i~i~~~~~~-------------------~~~~~~~~~~~ 52 (289)
T cd00200 7 GHTGGVTCVAFSPDGK---------------LLATGSGDGTIKVWDLETG-------------------ELLRTLKGHTG 52 (289)
T ss_pred ccCCCEEEEEEcCCCC---------------EEEEeecCcEEEEEEeeCC-------------------CcEEEEecCCc
Confidence 3456788999998765 8899999999999954332 14456678889
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEE
Q 004885 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~ 636 (725)
.|.++.|++++++|++++.|+.|++||+.+++.+..+..|...|.++.|++++.++++++.|+.|++||+++.. .+..+
T Consensus 53 ~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~ 131 (289)
T cd00200 53 PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-CLTTL 131 (289)
T ss_pred ceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-EEEEe
Confidence 99999999999999999999999999999888888899999999999999998888888889999999999766 67778
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 004885 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQV 715 (725)
Q Consensus 637 ~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~ 715 (725)
..|...|.+++|+|++. ++++++.|+.|++||+++++++..+.. ...+.+++|+|++..+++++.|+.|++||+++++
T Consensus 132 ~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~ 210 (289)
T cd00200 132 RGHTDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK 210 (289)
T ss_pred ccCCCcEEEEEEcCcCC-EEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCc
Confidence 88999999999999966 666777799999999999888888876 4589999999999899999999999999999999
Q ss_pred EEEEEeCCC
Q 004885 716 CRLKLQVSH 724 (725)
Q Consensus 716 ~v~~l~GH~ 724 (725)
.+..+.+|.
T Consensus 211 ~~~~~~~~~ 219 (289)
T cd00200 211 CLGTLRGHE 219 (289)
T ss_pred eecchhhcC
Confidence 998887775
No 36
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.6e-22 Score=202.48 Aligned_cols=200 Identities=22% Similarity=0.348 Sum_probs=170.9
Q ss_pred cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST 555 (725)
Q Consensus 476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~ 555 (725)
..+.+.+..++|+|.|. +|+++|+|.++.+|.- ....++.+.++++|.
T Consensus 58 ~~hkrsVRsvAwsp~g~---------------~La~aSFD~t~~Iw~k-----------------~~~efecv~~lEGHE 105 (312)
T KOG0645|consen 58 DGHKRSVRSVAWSPHGR---------------YLASASFDATVVIWKK-----------------EDGEFECVATLEGHE 105 (312)
T ss_pred ccchheeeeeeecCCCc---------------EEEEeeccceEEEeec-----------------CCCceeEEeeeeccc
Confidence 35667778888888775 9999999999999932 234678899999999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--C
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP--D 630 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~---~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~--~ 630 (725)
..|.|++|+++|++||+|++|+.|-||.+.. .+++.++.+|+..|..+.|||...+|+++++|.+|++|+-... -
T Consensus 106 nEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW 185 (312)
T KOG0645|consen 106 NEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDW 185 (312)
T ss_pred cceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCe
Confidence 9999999999999999999999999999863 5688899999999999999999999999999999999987632 2
Q ss_pred eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004885 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD 710 (725)
Q Consensus 631 ~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwD 710 (725)
.++.++.+|...|++++|++.|. -|++|+.|++|+||-..+ .....+...++.+.|. ...|++++.|+.|++|.
T Consensus 186 ~c~~tl~g~~~TVW~~~F~~~G~-rl~s~sdD~tv~Iw~~~~---~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 186 ECVQTLDGHENTVWSLAFDNIGS-RLVSCSDDGTVSIWRLYT---DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFK 259 (312)
T ss_pred eEEEEecCccceEEEEEecCCCc-eEEEecCCcceEeeeecc---CcchhcccceEeeeec--ccceEeccCCCEEEEEE
Confidence 57899999999999999999997 567999999999998662 1122235789999999 47899999999999997
Q ss_pred CCC
Q 004885 711 VET 713 (725)
Q Consensus 711 l~t 713 (725)
-..
T Consensus 260 ~s~ 262 (312)
T KOG0645|consen 260 ESD 262 (312)
T ss_pred ecC
Confidence 654
No 37
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1e-22 Score=210.77 Aligned_cols=203 Identities=19% Similarity=0.379 Sum_probs=181.1
Q ss_pred cccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecC
Q 004885 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (725)
Q Consensus 474 l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 553 (725)
..+.+.+.++++.|-|.+. ++.+++.|.+|+.| +..+.-.+.++.+
T Consensus 188 s~~gh~h~vS~V~f~P~gd---------------~ilS~srD~tik~W-------------------e~~tg~cv~t~~~ 233 (406)
T KOG0295|consen 188 SLIGHEHGVSSVFFLPLGD---------------HILSCSRDNTIKAW-------------------ECDTGYCVKTFPG 233 (406)
T ss_pred HhcCcccceeeEEEEecCC---------------eeeecccccceeEE-------------------ecccceeEEeccC
Confidence 4455666777777777654 99999999999999 3334467889999
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCC---------------CEEEEEeCC
Q 004885 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---------------SRLATSSAD 618 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~---------------~~Lasgs~D 618 (725)
|...|.-++.+.||.++|+|+.|-+|++|-+.+..+...+++|..+|.|++|.|.. .++++++.|
T Consensus 234 h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD 313 (406)
T KOG0295|consen 234 HSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD 313 (406)
T ss_pred chHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeeccc
Confidence 99999999999999999999999999999999999999999999999999998732 378999999
Q ss_pred CeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEE
Q 004885 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRI 697 (725)
Q Consensus 619 gtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~L 697 (725)
++|++||+.++. |+.++.+|...|..++|+|.|+ +|++|.+|++++|||++++.|...+.. ..-|++++|+.+-.++
T Consensus 314 ktIk~wdv~tg~-cL~tL~ghdnwVr~~af~p~Gk-yi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~V 391 (406)
T KOG0295|consen 314 KTIKIWDVSTGM-CLFTLVGHDNWVRGVAFSPGGK-YILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYV 391 (406)
T ss_pred ceEEEEeccCCe-EEEEEecccceeeeeEEcCCCe-EEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceE
Confidence 999999999998 8999999999999999999998 556999999999999999999999986 5669999999998899
Q ss_pred EEEEcCCeEEEEECC
Q 004885 698 LAAAIENYISILDVE 712 (725)
Q Consensus 698 la~s~Dg~V~IwDl~ 712 (725)
++|+-|-+++||..+
T Consensus 392 vTGsVdqt~KvwEcr 406 (406)
T KOG0295|consen 392 VTGSVDQTVKVWECR 406 (406)
T ss_pred EeccccceeeeeecC
Confidence 999999999999753
No 38
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.90 E-value=1.5e-21 Score=199.23 Aligned_cols=197 Identities=29% Similarity=0.539 Sum_probs=171.0
Q ss_pred cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004885 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (725)
Q Consensus 507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~ 586 (725)
.++++++.|+.|++|..... ..+..+..|...|.++.|+++++++++++.|+.|++||+.+
T Consensus 64 ~~l~~~~~~~~i~i~~~~~~-------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 124 (289)
T cd00200 64 TYLASGSSDKTIRLWDLETG-------------------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET 124 (289)
T ss_pred CEEEEEcCCCeEEEEEcCcc-------------------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 48889999999999954332 34455668888999999999988999998899999999998
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEE
Q 004885 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (725)
Q Consensus 587 ~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~ 666 (725)
++.+..+..|...|.+++|+|++.++++++.|+.|++||+++.. .+..+..|...|.+++|+|++..+ ++++.|+.|+
T Consensus 125 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~~~~i~ 202 (289)
T cd00200 125 GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK-CVATLTGHTGEVNSVAFSPDGEKL-LSSSSDGTIK 202 (289)
T ss_pred cEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc-cceeEecCccccceEEECCCcCEE-EEecCCCcEE
Confidence 89888999999999999999998889888889999999999776 678888898899999999998744 4666699999
Q ss_pred EEECCCCeeEEEEe-cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885 667 YWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH 724 (725)
Q Consensus 667 IwDl~t~~~v~~~~-~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~ 724 (725)
+||++++..+..+. +...+.+++|+|++.++++++.|+.|++||+.+++++..+.+|.
T Consensus 203 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~ 261 (289)
T cd00200 203 LWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT 261 (289)
T ss_pred EEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccC
Confidence 99999998888884 46689999999996677666669999999999999999998875
No 39
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.90 E-value=1.9e-23 Score=222.82 Aligned_cols=198 Identities=18% Similarity=0.294 Sum_probs=171.6
Q ss_pred CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004885 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (725)
Q Consensus 506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~ 585 (725)
..++.++++|+.|++|.+-++ .+.++++.+|..+|.+++|+.+|..|+++|+|+.|++||++
T Consensus 227 ~hLlLS~gmD~~vklW~vy~~------------------~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtE 288 (503)
T KOG0282|consen 227 GHLLLSGGMDGLVKLWNVYDD------------------RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTE 288 (503)
T ss_pred eeEEEecCCCceEEEEEEecC------------------cceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccc
Confidence 358999999999999954332 36788999999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc
Q 004885 586 SFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (725)
Q Consensus 586 ~~~~i~~l~~H~~~V~~IafsPd~-~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~ 664 (725)
+|.++..+.. ...++|+.|+|++ +.|++|+.|+.|+.||+++++ .+..+..|-+.|..+.|-++|.. +++.++|+.
T Consensus 289 TG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd~hLg~i~~i~F~~~g~r-FissSDdks 365 (503)
T KOG0282|consen 289 TGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYDRHLGAILDITFVDEGRR-FISSSDDKS 365 (503)
T ss_pred cceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHHhhhhheeeeEEccCCce-EeeeccCcc
Confidence 9999988864 5678999999987 889999999999999999998 78999999999999999999984 558888999
Q ss_pred EEEEECCCCee--------------------------------EEEEe--------------c---CCCeEEEEEecCCC
Q 004885 665 IRYWSINNGSC--------------------------------AGVFK--------------C---QSGATQMRFQPRLG 695 (725)
Q Consensus 665 I~IwDl~t~~~--------------------------------v~~~~--------------~---~~~V~sv~fspdg~ 695 (725)
|+||+.+.... +..|. + .+....|.|+|||+
T Consensus 366 ~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~ 445 (503)
T KOG0282|consen 366 VRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR 445 (503)
T ss_pred EEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC
Confidence 99999874321 11111 1 23356789999999
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885 696 RILAAAIENYISILDVETQVCRLKLQVSH 724 (725)
Q Consensus 696 ~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~ 724 (725)
+|++|..||.|.+||.++-+.+..+++|+
T Consensus 446 ~l~SGdsdG~v~~wdwkt~kl~~~lkah~ 474 (503)
T KOG0282|consen 446 TLCSGDSDGKVNFWDWKTTKLVSKLKAHD 474 (503)
T ss_pred eEEeecCCccEEEeechhhhhhhccccCC
Confidence 99999999999999999999999999995
No 40
>PTZ00421 coronin; Provisional
Probab=99.90 E-value=1.5e-21 Score=221.35 Aligned_cols=170 Identities=21% Similarity=0.338 Sum_probs=147.0
Q ss_pred EEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------eEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCC
Q 004885 549 QLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADR 619 (725)
Q Consensus 549 ~~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~-------~~i~~l~~H~~~V~~IafsPd~-~~Lasgs~Dg 619 (725)
..+.+|.+.|++++|+| ++++|++|+.|++|+|||+.+. ..+..+.+|...|.+|+|+|++ .+|++++.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 34679999999999999 8899999999999999999764 3567889999999999999975 6999999999
Q ss_pred eEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC--CeEEEEEecCCCEE
Q 004885 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GATQMRFQPRLGRI 697 (725)
Q Consensus 620 tIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~--~V~sv~fspdg~~L 697 (725)
+|+|||++++. .+..+.+|...|.+++|+|++. +|++++.|+.|+|||+++++.+..+..+. .+..+.|.+++..+
T Consensus 149 tVrIWDl~tg~-~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i 226 (493)
T PTZ00421 149 VVNVWDVERGK-AVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI 226 (493)
T ss_pred EEEEEECCCCe-EEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence 99999999887 7888899999999999999987 77899999999999999999988887643 35578899998888
Q ss_pred EEEEc----CCeEEEEECCCC-eEEEEE
Q 004885 698 LAAAI----ENYISILDVETQ-VCRLKL 720 (725)
Q Consensus 698 la~s~----Dg~V~IwDl~tg-~~v~~l 720 (725)
++++. |+.|++||+++. .++..+
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~ 254 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMASPYSTV 254 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCCceeEe
Confidence 87653 789999999875 344433
No 41
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.89 E-value=2.4e-21 Score=233.71 Aligned_cols=218 Identities=14% Similarity=0.257 Sum_probs=174.1
Q ss_pred CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (725)
Q Consensus 478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (725)
+...+.++.|++++. ++++|+.|+.|++|........ . .... ..+..+. +...
T Consensus 482 ~~~~V~~i~fs~dg~---------------~latgg~D~~I~iwd~~~~~~~----~------~~~~-~~~~~~~-~~~~ 534 (793)
T PLN00181 482 SSNLVCAIGFDRDGE---------------FFATAGVNKKIKIFECESIIKD----G------RDIH-YPVVELA-SRSK 534 (793)
T ss_pred CCCcEEEEEECCCCC---------------EEEEEeCCCEEEEEECCccccc----c------cccc-cceEEec-ccCc
Confidence 566688888888776 8999999999999964321000 0 0000 1112222 3467
Q ss_pred eEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeEE
Q 004885 558 VESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRT 635 (725)
Q Consensus 558 V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~~l~~ 635 (725)
|.+++|++ ++.+|++++.||+|+|||+.+++.+..+.+|...|++++|+| ++.+|++|+.|++|++||++++. ++..
T Consensus 535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-~~~~ 613 (793)
T PLN00181 535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV-SIGT 613 (793)
T ss_pred eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc-EEEE
Confidence 99999987 478999999999999999999999999999999999999997 78899999999999999999877 6777
Q ss_pred EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe-eEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004885 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVET 713 (725)
Q Consensus 636 ~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~-~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~t 713 (725)
+..+ ..|.++.|++....+|++|+.|+.|++||+++.. .+..+.. ...|.++.|. ++.+|++++.|++|+|||+++
T Consensus 614 ~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 614 IKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred EecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCC
Confidence 7654 5799999976544588899999999999998765 4555544 5689999997 568999999999999999985
Q ss_pred ------CeEEEEEeCCCC
Q 004885 714 ------QVCRLKLQVSHS 725 (725)
Q Consensus 714 ------g~~v~~l~GH~s 725 (725)
..++++|.||.+
T Consensus 692 ~~~~~~~~~l~~~~gh~~ 709 (793)
T PLN00181 692 SISGINETPLHSFMGHTN 709 (793)
T ss_pred CccccCCcceEEEcCCCC
Confidence 368889999863
No 42
>PTZ00420 coronin; Provisional
Probab=99.89 E-value=1.8e-21 Score=222.26 Aligned_cols=173 Identities=17% Similarity=0.267 Sum_probs=142.3
Q ss_pred eeEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCe--------EEEEeccCCCCeEEEEEcCCCCE-EEEE
Q 004885 546 TEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFT--------VKSTLEEHTQWITDVRFSPSLSR-LATS 615 (725)
Q Consensus 546 ~~~~~l~~H~~~V~~i~fSpd-g~~LaSgs~Dg~V~IWdl~~~~--------~i~~l~~H~~~V~~IafsPd~~~-Lasg 615 (725)
..+..+.+|.+.|.+|+|+|+ +.+||+|+.|++|+|||+.++. ++..+.+|...|.+|+|+|++.. |+++
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence 456788999999999999996 7899999999999999997532 34567899999999999998775 5789
Q ss_pred eCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC-CeEE-----EE
Q 004885 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQ-----MR 689 (725)
Q Consensus 616 s~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~-~V~s-----v~ 689 (725)
+.|++|+|||++++. .+..+. |...|.+++|+|+|. +|++++.|+.|+|||++++.++..+..+. .+.. ..
T Consensus 145 S~DgtIrIWDl~tg~-~~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~ 221 (568)
T PTZ00420 145 GFDSFVNIWDIENEK-RAFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDG 221 (568)
T ss_pred eCCCeEEEEECCCCc-EEEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeee
Confidence 999999999999887 455554 567899999999998 66778889999999999999998887643 3322 23
Q ss_pred EecCCCEEEEEEcCC----eEEEEECCC-CeEEEEEe
Q 004885 690 FQPRLGRILAAAIEN----YISILDVET-QVCRLKLQ 721 (725)
Q Consensus 690 fspdg~~Lla~s~Dg----~V~IwDl~t-g~~v~~l~ 721 (725)
|++++.+|++++.|+ .|+|||+++ ++++..+.
T Consensus 222 fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ 258 (568)
T PTZ00420 222 LGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS 258 (568)
T ss_pred EcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE
Confidence 458889999988774 799999995 56666554
No 43
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=5.4e-22 Score=212.12 Aligned_cols=197 Identities=21% Similarity=0.339 Sum_probs=165.9
Q ss_pred CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEE
Q 004885 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVL 581 (725)
Q Consensus 503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpd-g~~LaSgs~Dg~V~I 581 (725)
-..++++++|...|.|++|+ -.+...++.+.+|+.+|..+.|+|. +..|++|+.|+.+++
T Consensus 77 R~DG~LlaaGD~sG~V~vfD-------------------~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~ 137 (487)
T KOG0310|consen 77 RSDGRLLAAGDESGHVKVFD-------------------MKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKY 137 (487)
T ss_pred ecCCeEEEccCCcCcEEEec-------------------cccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEE
Confidence 34456899999999999993 1122345677899999999999995 557889999999999
Q ss_pred EECCCCeEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEe
Q 004885 582 WCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (725)
Q Consensus 582 Wdl~~~~~i~~l~~H~~~V~~IafsPd-~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs 660 (725)
||+.+......+.+|+..|.|.+|+|- +..++||++||+||+||++.....+..+ .|..+|.++.|-|.|. ++++|+
T Consensus 138 ~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs-~iasAg 215 (487)
T KOG0310|consen 138 WDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGS-LIASAG 215 (487)
T ss_pred EEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCC-EEEEcC
Confidence 999998887789999999999999994 6689999999999999999886345554 5889999999999988 677777
Q ss_pred CCCcEEEEECCCC-eeEEEEe-cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 661 NNSEIRYWSINNG-SCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 661 ~Dg~I~IwDl~t~-~~v~~~~-~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
...|+|||+-+| ..+..+. |...|+|+++..++..|++++-|+.|+|||+.+.+.++.+.
T Consensus 216 -Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~ 277 (487)
T KOG0310|consen 216 -GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK 277 (487)
T ss_pred -CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee
Confidence 568999999854 4555554 67889999999999999999999999999999999998775
No 44
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.89 E-value=2e-21 Score=208.83 Aligned_cols=229 Identities=18% Similarity=0.390 Sum_probs=185.5
Q ss_pred cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCC----------------------------
Q 004885 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA---------------------------- 527 (725)
Q Consensus 476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~---------------------------- 527 (725)
-.++..++...|+|.|. |+++|...|+||+|.....+
T Consensus 56 tEH~~~vtVAkySPsG~---------------yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~a 120 (603)
T KOG0318|consen 56 TEHAHQVTVAKYSPSGF---------------YIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAA 120 (603)
T ss_pred ccccceeEEEEeCCCce---------------EEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEE
Confidence 34677888888888776 99999999999999766531
Q ss_pred --CCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEE
Q 004885 528 --DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR 604 (725)
Q Consensus 528 --~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~Ia 604 (725)
+++.++++..-...+ ..+-.+.+|+..|.+|+|-|... ++++|++|++|.+|+-...+...++..|...|.|++
T Consensus 121 vGEGrerfg~~F~~DSG---~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VR 197 (603)
T KOG0318|consen 121 VGEGRERFGHVFLWDSG---NSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVR 197 (603)
T ss_pred EecCccceeEEEEecCC---CccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEE
Confidence 111122221111111 23456789999999999999777 699999999999999888888889999999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEe---cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-
Q 004885 605 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK- 680 (725)
Q Consensus 605 fsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~---~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~- 680 (725)
|+|||.+|+|.+.||+|.+||-.+++ .+..+. +|.+.|.+|.|+||+.. |++++.|.+++|||+.+.+++.++.
T Consensus 198 ysPDG~~Fat~gsDgki~iyDGktge-~vg~l~~~~aHkGsIfalsWsPDs~~-~~T~SaDkt~KIWdVs~~slv~t~~~ 275 (603)
T KOG0318|consen 198 YSPDGSRFATAGSDGKIYIYDGKTGE-KVGELEDSDAHKGSIFALSWSPDSTQ-FLTVSADKTIKIWDVSTNSLVSTWPM 275 (603)
T ss_pred ECCCCCeEEEecCCccEEEEcCCCcc-EEEEecCCCCccccEEEEEECCCCce-EEEecCCceEEEEEeeccceEEEeec
Confidence 99999999999999999999999988 577776 89999999999999884 5599999999999999877665543
Q ss_pred -------------------------------------------cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEE
Q 004885 681 -------------------------------------------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR 717 (725)
Q Consensus 681 -------------------------------------------~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v 717 (725)
|...|+++..++++.+|++|+.||.|.-||..+|.+-
T Consensus 276 ~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 276 GSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred CCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence 1235889999999999999999999999999998655
Q ss_pred EEE-eCCC
Q 004885 718 LKL-QVSH 724 (725)
Q Consensus 718 ~~l-~GH~ 724 (725)
+-. ++|.
T Consensus 356 ~~~g~~h~ 363 (603)
T KOG0318|consen 356 RLAGKGHT 363 (603)
T ss_pred cccccccc
Confidence 433 4443
No 45
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=7.2e-22 Score=221.83 Aligned_cols=211 Identities=18% Similarity=0.297 Sum_probs=181.3
Q ss_pred cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST 555 (725)
Q Consensus 476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~ 555 (725)
..+..++..+.|+|... ++++|+.|-+|++|.. ...+.+.++.+|-
T Consensus 48 deHdGpVRgv~FH~~qp---------------lFVSGGDDykIkVWnY-------------------k~rrclftL~GHl 93 (1202)
T KOG0292|consen 48 DEHDGPVRGVDFHPTQP---------------LFVSGGDDYKIKVWNY-------------------KTRRCLFTLLGHL 93 (1202)
T ss_pred hccCCccceeeecCCCC---------------eEEecCCccEEEEEec-------------------ccceehhhhcccc
Confidence 34566778888888776 9999999999999932 3336677889999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-----
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD----- 630 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~----- 630 (725)
+.|+.+.|++.-.+|+++|.|-+|+||+..+.+++.+++||...|+|..|+|..+.++++|-|-+|||||+..-.
T Consensus 94 DYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~ 173 (1202)
T KOG0292|consen 94 DYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKA 173 (1202)
T ss_pred ceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999985210
Q ss_pred -----------------------eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEE--EEe-cCCC
Q 004885 631 -----------------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFK-CQSG 684 (725)
Q Consensus 631 -----------------------~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~--~~~-~~~~ 684 (725)
.....+.||...|+-++|+|.-+ ++++|++|+.|++|.+...+.-. +.. |...
T Consensus 174 pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nn 252 (1202)
T KOG0292|consen 174 PGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNN 252 (1202)
T ss_pred CCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccccceeehhhhcccCC
Confidence 12345679999999999999977 88899999999999987543221 222 3567
Q ss_pred eEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 685 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 685 V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
|.++-|+|....+++.+.|++|+|||+...+++++|+
T Consensus 253 Vssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 253 VSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR 289 (1202)
T ss_pred cceEEecCccceeEecCCCccEEEEecccccceeeee
Confidence 9999999998899999999999999999999998885
No 46
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.9e-22 Score=200.24 Aligned_cols=201 Identities=19% Similarity=0.291 Sum_probs=168.6
Q ss_pred CCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEE
Q 004885 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLW 582 (725)
Q Consensus 504 ~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IW 582 (725)
.++..+++++-||++++|+.. ..-.++..+++|...|.+|.|++ ++..++++|.|++|++|
T Consensus 71 ~~e~~~~~a~GDGSLrl~d~~------------------~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW 132 (311)
T KOG0277|consen 71 NHENQVIAASGDGSLRLFDLT------------------MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLW 132 (311)
T ss_pred CCcceEEEEecCceEEEeccC------------------CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEee
Confidence 445688889999999999522 22347888999999999999998 45578888999999999
Q ss_pred ECCCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeC
Q 004885 583 CTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (725)
Q Consensus 583 dl~~~~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~ 661 (725)
+..-...+.++.+|...|+...|+| ..+.+++++.|+++++||++.+... ..+..|...|.+++|+.-..+++++++.
T Consensus 133 ~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~-~~i~ah~~Eil~cdw~ky~~~vl~Tg~v 211 (311)
T KOG0277|consen 133 DPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKF-MSIEAHNSEILCCDWSKYNHNVLATGGV 211 (311)
T ss_pred cCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCce-eEEEeccceeEeecccccCCcEEEecCC
Confidence 9999999999999999999999999 5789999999999999999988744 4488999999999999988999999999
Q ss_pred CCcEEEEECCCC-eeEEEEec-CCCeEEEEEecCCCE-EEEEEcCCeEEEEECCCC-eEEEEEeCC
Q 004885 662 NSEIRYWSINNG-SCAGVFKC-QSGATQMRFQPRLGR-ILAAAIENYISILDVETQ-VCRLKLQVS 723 (725)
Q Consensus 662 Dg~I~IwDl~t~-~~v~~~~~-~~~V~sv~fspdg~~-Lla~s~Dg~V~IwDl~tg-~~v~~l~GH 723 (725)
|+.||+||+++- .++.++.+ .-.|..|.|+|.... |++++.|-+++|||.+.+ .++.++.-|
T Consensus 212 d~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H 277 (311)
T KOG0277|consen 212 DNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH 277 (311)
T ss_pred CceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc
Confidence 999999999974 45555554 556999999998654 566777999999999865 444444444
No 47
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.89 E-value=1.4e-21 Score=217.04 Aligned_cols=186 Identities=27% Similarity=0.438 Sum_probs=163.1
Q ss_pred EEEEeeCC-CcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004885 508 FVDDGSLD-DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (725)
Q Consensus 508 ~lasGs~D-~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~ 586 (725)
+++.|+.. |.+-+|.+..+ ..+....+|...|+|++++|||.+||+|++||+|+|||..+
T Consensus 321 WiA~g~~klgQLlVweWqsE-------------------sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S 381 (893)
T KOG0291|consen 321 WIAFGCSKLGQLLVWEWQSE-------------------SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS 381 (893)
T ss_pred EEEEcCCccceEEEEEeecc-------------------ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccC
Confidence 77776653 78889955443 34556679999999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCC-CCeEEEEEccCCCeEEEEEeCCC-c
Q 004885 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNS-E 664 (725)
Q Consensus 587 ~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~-~~V~sl~fsP~g~~llaSgs~Dg-~ 664 (725)
+.|+.+|.+|+..|+.+.|+..++.+++++-||+||.||+.... +.++|.... ....||+.+|.|. ++|+|+.|. .
T Consensus 382 gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr-NfRTft~P~p~QfscvavD~sGe-lV~AG~~d~F~ 459 (893)
T KOG0291|consen 382 GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR-NFRTFTSPEPIQFSCVAVDPSGE-LVCAGAQDSFE 459 (893)
T ss_pred ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc-eeeeecCCCceeeeEEEEcCCCC-EEEeeccceEE
Confidence 99999999999999999999999999999999999999999877 677777543 3468889999988 777887665 5
Q ss_pred EEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885 665 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ 714 (725)
Q Consensus 665 I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg 714 (725)
|+||++.+|+.+..+.+ .++|.+++|+|++..|++++.|.+|++||+-..
T Consensus 460 IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 460 IFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred EEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence 99999999999999987 788999999999999999999999999998544
No 48
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.88 E-value=1.5e-21 Score=202.28 Aligned_cols=215 Identities=18% Similarity=0.265 Sum_probs=176.7
Q ss_pred cccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecC
Q 004885 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (725)
Q Consensus 474 l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 553 (725)
....+..+++++.|+.++. ||++|.++|.|++|....+ .....+..
T Consensus 101 eltgHKDSVt~~~Fshdgt---------------lLATGdmsG~v~v~~~stg-------------------~~~~~~~~ 146 (399)
T KOG0296|consen 101 ELTGHKDSVTCCSFSHDGT---------------LLATGDMSGKVLVFKVSTG-------------------GEQWKLDQ 146 (399)
T ss_pred EecCCCCceEEEEEccCce---------------EEEecCCCccEEEEEcccC-------------------ceEEEeec
Confidence 3445677889999999888 9999999999999944333 33334434
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004885 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l 633 (725)
--+.|.-+.|+|.+.+|+.|+.||.|-+|.+.+......+.+|..++++=.|.|+|++++++..||+|++||+.++. ++
T Consensus 147 e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~-p~ 225 (399)
T KOG0296|consen 147 EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQ-PL 225 (399)
T ss_pred ccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCc-ee
Confidence 55678899999999999999999999999999988888999999999999999999999999999999999998765 22
Q ss_pred EEEe---------------------------------------------------cCCCCeEEEEEccCCC--eEEEEEe
Q 004885 634 RTFT---------------------------------------------------GHSTTVMSLDFHPSKE--DLLCSCD 660 (725)
Q Consensus 634 ~~~~---------------------------------------------------~h~~~V~sl~fsP~g~--~llaSgs 660 (725)
..+. .+...+.+|.|.|... .++|+|+
T Consensus 226 ~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~ 305 (399)
T KOG0296|consen 226 HKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGS 305 (399)
T ss_pred EEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhccc
Confidence 2221 1112233333333211 2677888
Q ss_pred CCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885 661 NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH 724 (725)
Q Consensus 661 ~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~ 724 (725)
-||+|.|||+...+..+.+.+..+|+.+.|.+ ..+|++++.+|.|++||.|+|.++.++.||.
T Consensus 306 vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~ 368 (399)
T KOG0296|consen 306 VDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQ 368 (399)
T ss_pred ccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCc
Confidence 99999999999999888898989999999999 5899999999999999999999999999996
No 49
>PTZ00420 coronin; Provisional
Probab=99.88 E-value=2.4e-20 Score=213.17 Aligned_cols=212 Identities=12% Similarity=0.146 Sum_probs=160.6
Q ss_pred cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST 555 (725)
Q Consensus 476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~ 555 (725)
..+...+.++.|+|+.. .++++|+.|+.|++|....+.... ......+..+.+|.
T Consensus 71 ~gH~~~V~~lafsP~~~--------------~lLASgS~DgtIrIWDi~t~~~~~-----------~~i~~p~~~L~gH~ 125 (568)
T PTZ00420 71 KGHTSSILDLQFNPCFS--------------EILASGSEDLTIRVWEIPHNDESV-----------KEIKDPQCILKGHK 125 (568)
T ss_pred cCCCCCEEEEEEcCCCC--------------CEEEEEeCCCeEEEEECCCCCccc-----------cccccceEEeecCC
Confidence 34556788888888532 389999999999999765432100 00012345678999
Q ss_pred CCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE
Q 004885 556 SKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (725)
Q Consensus 556 ~~V~~i~fSpdg~~-LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~ 634 (725)
..|.+|+|+|++.. |++++.|++|+|||++++..+..+. |...|.+++|+|++.+|++++.|+.|+|||++++. .+.
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~-~i~ 203 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE-IAS 203 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc-EEE
Confidence 99999999998875 5789999999999999988777775 66789999999999999999999999999999987 678
Q ss_pred EEecCCCCeEEE-----EEccCCCeEEEEEeCC----CcEEEEECCC-CeeEEEEecCCCeE--EEEEe-cCCCEEEEEE
Q 004885 635 TFTGHSTTVMSL-----DFHPSKEDLLCSCDNN----SEIRYWSINN-GSCAGVFKCQSGAT--QMRFQ-PRLGRILAAA 701 (725)
Q Consensus 635 ~~~~h~~~V~sl-----~fsP~g~~llaSgs~D----g~I~IwDl~t-~~~v~~~~~~~~V~--sv~fs-pdg~~Lla~s 701 (725)
.+.+|.+.+.+. .|++++.+++ +++.| +.|+|||+++ ..++..+..+.... ...|. +++.++++|+
T Consensus 204 tl~gH~g~~~s~~v~~~~fs~d~~~Il-TtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGk 282 (568)
T PTZ00420 204 SFHIHDGGKNTKNIWIDGLGGDDNYIL-STGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGK 282 (568)
T ss_pred EEecccCCceeEEEEeeeEcCCCCEEE-EEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEE
Confidence 899998765433 3457877555 54444 4799999995 66776666533322 23344 4467788888
Q ss_pred cCCeEEEEECCCCe
Q 004885 702 IENYISILDVETQV 715 (725)
Q Consensus 702 ~Dg~V~IwDl~tg~ 715 (725)
.|+.|++|++..+.
T Consensus 283 GD~tIr~~e~~~~~ 296 (568)
T PTZ00420 283 GDGNCRYYQHSLGS 296 (568)
T ss_pred CCCeEEEEEccCCc
Confidence 99999999998774
No 50
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.88 E-value=3.1e-21 Score=200.77 Aligned_cols=208 Identities=21% Similarity=0.303 Sum_probs=169.9
Q ss_pred cCCCCcEEEEeeCCCcEEEecCCCC-CCCCCcc-----ccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 004885 502 LTDMDRFVDDGSLDDNVESFLSPDD-ADPRDRV-----GRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH 575 (725)
Q Consensus 502 ~~~~~~~lasGs~D~~V~vw~s~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~ 575 (725)
+......+++|++|..|++|....+ .+.-... ..........+..++.++.+|+.+|.++.|++ ...+++++.
T Consensus 201 v~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~Sw 279 (423)
T KOG0313|consen 201 VDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSW 279 (423)
T ss_pred ecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecc
Confidence 3444557899999999999972222 1110000 01111123345567889999999999999997 678999999
Q ss_pred CCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--eeeEEEecCCCCeEEEEEccCCC
Q 004885 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKE 653 (725)
Q Consensus 576 Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~--~~l~~~~~h~~~V~sl~fsP~g~ 653 (725)
|++|++||+.++..+.++.+ ...++||+++|..++|++|+.|..|++||.+++. .....|.+|...|.+|.|+|...
T Consensus 280 DHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~ 358 (423)
T KOG0313|consen 280 DHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNE 358 (423)
T ss_pred cceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCc
Confidence 99999999999999888875 5679999999999999999999999999999875 34578899999999999999999
Q ss_pred eEEEEEeCCCcEEEEECCCCe-eEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885 654 DLLCSCDNNSEIRYWSINNGS-CAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVE 712 (725)
Q Consensus 654 ~llaSgs~Dg~I~IwDl~t~~-~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~ 712 (725)
++|++++.|+++++||+|+.+ ++..+.. ...|.++.|.. +..|++|+.|++|+|+.-.
T Consensus 359 ~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 359 FQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred eEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 999999999999999999876 7777765 67899999986 4789999999999998643
No 51
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.88 E-value=1.6e-20 Score=202.02 Aligned_cols=214 Identities=14% Similarity=0.248 Sum_probs=171.9
Q ss_pred ccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEec--
Q 004885 475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-- 552 (725)
Q Consensus 475 ~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-- 552 (725)
...++.-+.++.|+|||. ++++.+.|++|.+| ++.+.+.+..+.
T Consensus 186 ~r~HskFV~~VRysPDG~---------------~Fat~gsDgki~iy-------------------DGktge~vg~l~~~ 231 (603)
T KOG0318|consen 186 FREHSKFVNCVRYSPDGS---------------RFATAGSDGKIYIY-------------------DGKTGEKVGELEDS 231 (603)
T ss_pred ccccccceeeEEECCCCC---------------eEEEecCCccEEEE-------------------cCCCccEEEEecCC
Confidence 345667889999999987 88999999999999 444444555555
Q ss_pred -CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE---------------------------------------
Q 004885 553 -ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--------------------------------------- 592 (725)
Q Consensus 553 -~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~--------------------------------------- 592 (725)
+|.+.|++++|+||+..|++++.|++++|||+.+.+++.+
T Consensus 232 ~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~ 311 (603)
T KOG0318|consen 232 DAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPS 311 (603)
T ss_pred CCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCC
Confidence 9999999999999999999999999999999976554433
Q ss_pred ----eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-------------------------------------
Q 004885 593 ----LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY------------------------------------- 631 (725)
Q Consensus 593 ----l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~------------------------------------- 631 (725)
+.+|...|+++..+|++++|++|+.||.|.-||..++..
T Consensus 312 ~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~ 391 (603)
T KOG0318|consen 312 VLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISL 391 (603)
T ss_pred hhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEec
Confidence 357999999999999999999999999999999643210
Q ss_pred --------------------------------------------------------------------------ee----
Q 004885 632 --------------------------------------------------------------------------SL---- 633 (725)
Q Consensus 632 --------------------------------------------------------------------------~l---- 633 (725)
.+
T Consensus 392 ~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvys 471 (603)
T KOG0318|consen 392 KDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYS 471 (603)
T ss_pred ccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEE
Confidence 00
Q ss_pred ---------EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEE-E-ecCCCeEEEEEecCCCEEEEEEc
Q 004885 634 ---------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-F-KCQSGATQMRFQPRLGRILAAAI 702 (725)
Q Consensus 634 ---------~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~-~-~~~~~V~sv~fspdg~~Lla~s~ 702 (725)
.....|.+.|++|+|+|++. +|++|+..+.|.+||+.+...... + -|...|.+|+|+|+..++++|+.
T Consensus 472 l~g~~l~ee~~~~~h~a~iT~vaySpd~~-yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSl 550 (603)
T KOG0318|consen 472 LSGDELKEEAKLLEHRAAITDVAYSPDGA-YLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSL 550 (603)
T ss_pred ecCCcccceeeeecccCCceEEEECCCCc-EEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccc
Confidence 01224778899999999988 778999999999999988766322 2 25788999999999999999999
Q ss_pred CCeEEEEECCCC-eEEEEEeCC
Q 004885 703 ENYISILDVETQ-VCRLKLQVS 723 (725)
Q Consensus 703 Dg~V~IwDl~tg-~~v~~l~GH 723 (725)
|..|.||+++.. +.+....+|
T Consensus 551 Dt~Viiysv~kP~~~i~iknAH 572 (603)
T KOG0318|consen 551 DTNVIIYSVKKPAKHIIIKNAH 572 (603)
T ss_pred cceEEEEEccChhhheEecccc
Confidence 999999999876 333333344
No 52
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.87 E-value=3.1e-21 Score=219.52 Aligned_cols=194 Identities=23% Similarity=0.379 Sum_probs=175.1
Q ss_pred CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEE-ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL-IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (725)
Q Consensus 506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl 584 (725)
+.++.+|+.|.+|++| +..+...+.. +.+|.+.|.+++|...+.+|++|+.|++++|||+
T Consensus 218 ~~~~~~~s~~~tl~~~-------------------~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~ 278 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLW-------------------DLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDC 278 (537)
T ss_pred cCeEEecCCCceeEEe-------------------ecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEec
Confidence 4588999999999999 3444455555 9999999999999877889999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc
Q 004885 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (725)
Q Consensus 585 ~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~ 664 (725)
.++.+.+++.+|.+.|.++...+ .++++|+.|.+|+||++.++. ++.++.+|.+.|.++..+ +. ++++|+.|++
T Consensus 279 ~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~-~l~l~~~h~~~V~~v~~~--~~-~lvsgs~d~~ 352 (537)
T KOG0274|consen 279 STGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGA-CLNLLRGHTGPVNCVQLD--EP-LLVSGSYDGT 352 (537)
T ss_pred CCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcc-eEEEeccccccEEEEEec--CC-EEEEEecCce
Confidence 99999999999999999998864 578889999999999999988 899999999999999998 33 7889999999
Q ss_pred EEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEEeCCCC
Q 004885 665 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQVSHS 725 (725)
Q Consensus 665 I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg-~~v~~l~GH~s 725 (725)
|+|||+.+++|+.++.+ ...|+++.+... .+++.|+.|++|++||+++. +|+++|.+|.+
T Consensus 353 v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~ 414 (537)
T KOG0274|consen 353 VKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS 414 (537)
T ss_pred EEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcc
Confidence 99999999999999987 677999988876 78999999999999999999 99999999964
No 53
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.87 E-value=2.8e-20 Score=224.41 Aligned_cols=190 Identities=22% Similarity=0.267 Sum_probs=162.0
Q ss_pred CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 004885 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT 584 (725)
Q Consensus 506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl 584 (725)
..++++++.|+.|++|+... ...+..+.+|.+.|++++|+| ++.+|++|+.|++|+|||+
T Consensus 545 ~~~las~~~Dg~v~lWd~~~-------------------~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~ 605 (793)
T PLN00181 545 KSQVASSNFEGVVQVWDVAR-------------------SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSI 605 (793)
T ss_pred CCEEEEEeCCCeEEEEECCC-------------------CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEEC
Confidence 56899999999999994322 245677889999999999997 7899999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC
Q 004885 585 ESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (725)
Q Consensus 585 ~~~~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg 663 (725)
.++..+..+..+ ..|.++.|++ ++.+|++|+.|++|++||+++...++..+.+|...|.++.|. ++. .+++++.|+
T Consensus 606 ~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~-~lvs~s~D~ 682 (793)
T PLN00181 606 NQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS-TLVSSSTDN 682 (793)
T ss_pred CCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC-EEEEEECCC
Confidence 999888888754 6799999965 689999999999999999998764577888999999999997 445 677899999
Q ss_pred cEEEEECCC------CeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEE
Q 004885 664 EIRYWSINN------GSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCR 717 (725)
Q Consensus 664 ~I~IwDl~t------~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v 717 (725)
+|+|||++. ..++..+.. ...+..++|++++.+|++|+.|+.|+||+......+
T Consensus 683 ~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~ 743 (793)
T PLN00181 683 TLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPV 743 (793)
T ss_pred EEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCce
Confidence 999999974 356677765 556889999999999999999999999998766544
No 54
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=7.1e-22 Score=196.28 Aligned_cols=186 Identities=22% Similarity=0.296 Sum_probs=159.8
Q ss_pred cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 004885 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 585 (725)
Q Consensus 507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~ 585 (725)
+.+.++|+|++|++| ....-..+.++++|..-|+...|+| ..++++++|.|+++++||++
T Consensus 118 ~~~ltsSWD~TiKLW-------------------~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr 178 (311)
T KOG0277|consen 118 RIFLTSSWDGTIKLW-------------------DPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVR 178 (311)
T ss_pred eeEEeeccCCceEee-------------------cCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEec
Confidence 345666999999999 3333456778999999999999999 67899999999999999998
Q ss_pred CCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc
Q 004885 586 SFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (725)
Q Consensus 586 ~~~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~ 664 (725)
.......++.|...|.|+.|+. +...|+||+.|+.||+||+++-..++..+.+|.-.|..|.|+|....+|++|+.|-+
T Consensus 179 ~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT 258 (311)
T KOG0277|consen 179 SPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMT 258 (311)
T ss_pred CCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccce
Confidence 7433334889999999999988 678899999999999999999888899999999999999999999999999999999
Q ss_pred EEEEECC-CCeeEEEEec-CCCeEEEEEecC-CCEEEEEEcCCeEEEEEC
Q 004885 665 IRYWSIN-NGSCAGVFKC-QSGATQMRFQPR-LGRILAAAIENYISILDV 711 (725)
Q Consensus 665 I~IwDl~-t~~~v~~~~~-~~~V~sv~fspd-g~~Lla~s~Dg~V~IwDl 711 (725)
+||||.. ...++.+..+ ..-|..+.|++- ..+++.++.|..++||+-
T Consensus 259 ~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 259 VRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 9999987 4456666665 455888998874 457888899999999983
No 55
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.87 E-value=1.2e-22 Score=208.52 Aligned_cols=213 Identities=23% Similarity=0.398 Sum_probs=174.2
Q ss_pred ccccCCCCCeeEEEEecCCCccccc------cCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceee
Q 004885 473 TLQHNGASSKSLLMFGSDGMGSLTS------APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFT 546 (725)
Q Consensus 473 ~l~~s~s~~~s~l~fs~dg~~~la~------~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~ 546 (725)
....++.++.++-.|....-.++-. +.-.+.-.++++++|+.|.+|++|++..+ +
T Consensus 208 ~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tg-------------------e 268 (499)
T KOG0281|consen 208 EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTG-------------------E 268 (499)
T ss_pred hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCC-------------------c
Confidence 3445666677777776654311111 11123344568999999999999955444 5
Q ss_pred eEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 004885 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (725)
Q Consensus 547 ~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~---~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrv 623 (725)
.+.++-+|...|..+.|+ ..++++|+.|.++.|||+.... +.+++.+|...|+.+.|+ .+++++++.|.+|++
T Consensus 269 ~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikv 344 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKV 344 (499)
T ss_pred hhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEE
Confidence 677788999999999996 5799999999999999997654 345678999999999996 569999999999999
Q ss_pred EECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEc
Q 004885 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI 702 (725)
Q Consensus 624 WDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~ 702 (725)
|++.+.+ +++++.+|...|.|+.+. ..++++|+.|.+|++||+..|.|++.+++ ..-|.+|.|.. +.+++|+.
T Consensus 345 W~~st~e-fvRtl~gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~--krIVSGaY 418 (499)
T KOG0281|consen 345 WSTSTCE-FVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSGAY 418 (499)
T ss_pred Eecccee-eehhhhcccccceehhcc---CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC--ceeeeccc
Confidence 9999998 899999999999999875 33899999999999999999999999997 44589999974 68999999
Q ss_pred CCeEEEEECCCC
Q 004885 703 ENYISILDVETQ 714 (725)
Q Consensus 703 Dg~V~IwDl~tg 714 (725)
||+|+|||+.++
T Consensus 419 DGkikvWdl~aa 430 (499)
T KOG0281|consen 419 DGKIKVWDLQAA 430 (499)
T ss_pred cceEEEEecccc
Confidence 999999999876
No 56
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.87 E-value=8.6e-21 Score=219.10 Aligned_cols=225 Identities=19% Similarity=0.339 Sum_probs=185.9
Q ss_pred cccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecC
Q 004885 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (725)
Q Consensus 474 l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 553 (725)
....+..+++|+.|++||. ++|+||.|..|.+|.-.. .......+..-.......|+.+..+.+
T Consensus 64 ~m~~h~~sv~CVR~S~dG~---------------~lAsGSDD~~v~iW~~~~-~~~~~~fgs~g~~~~vE~wk~~~~l~~ 127 (942)
T KOG0973|consen 64 TMDDHDGSVNCVRFSPDGS---------------YLASGSDDRLVMIWERAE-IGSGTVFGSTGGAKNVESWKVVSILRG 127 (942)
T ss_pred eeccccCceeEEEECCCCC---------------eEeeccCcceEEEeeecc-cCCcccccccccccccceeeEEEEEec
Confidence 3445677889999999998 999999999999994433 111111111112334567899999999
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC---
Q 004885 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--- 630 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~--- 630 (725)
|.+.|.+++|+|++.+|++++.|.+|.|||..+++.+.++++|.+.|..+.|+|-|+||++-+.|++|+||++.+-.
T Consensus 128 H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k 207 (942)
T KOG0973|consen 128 HDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK 207 (942)
T ss_pred CCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999954210
Q ss_pred -------------------------------------e-----------eeEEEecCCCCeEEEEEccC--------C--
Q 004885 631 -------------------------------------Y-----------SLRTFTGHSTTVMSLDFHPS--------K-- 652 (725)
Q Consensus 631 -------------------------------------~-----------~l~~~~~h~~~V~sl~fsP~--------g-- 652 (725)
. .-..+.||..++.+++|+|. |
T Consensus 208 ~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~ 287 (942)
T KOG0973|consen 208 SITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTS 287 (942)
T ss_pred eeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCc
Confidence 0 12345689999999999982 1
Q ss_pred -----C-eEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885 653 -----E-DLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQ 714 (725)
Q Consensus 653 -----~-~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg 714 (725)
. .++|+|+.|++|.||.....+++..... ...|..++|+|||-.|++|+.||+|.++.++..
T Consensus 288 ~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 288 TQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred cCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 1 2788899999999999987777766654 678999999999999999999999999998764
No 57
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=3.3e-21 Score=216.51 Aligned_cols=210 Identities=21% Similarity=0.346 Sum_probs=178.4
Q ss_pred CCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCe
Q 004885 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV 558 (725)
Q Consensus 479 s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V 558 (725)
+..+.-+.|+|... ++.++=..|.|.+|+. .....+..+.+|.++|
T Consensus 9 SsRvKglsFHP~rP---------------wILtslHsG~IQlWDY-------------------RM~tli~rFdeHdGpV 54 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRP---------------WILTSLHSGVIQLWDY-------------------RMGTLIDRFDEHDGPV 54 (1202)
T ss_pred cccccceecCCCCC---------------EEEEeecCceeeeehh-------------------hhhhHHhhhhccCCcc
Confidence 34455667777665 8888889999999932 2224566788999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEec
Q 004885 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 638 (725)
Q Consensus 559 ~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~ 638 (725)
+.|+|+|...++++|+.|.+|+||+.++.+++.++.+|-..|..+.||+...+|+++|.|-+||||+..+.. |+.+++|
T Consensus 55 Rgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~-~iavltG 133 (1202)
T KOG0292|consen 55 RGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK-CIAVLTG 133 (1202)
T ss_pred ceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc-eEEEEec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988 8999999
Q ss_pred CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC--------C-------------------eeE--EEEec-CCCeEEE
Q 004885 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--------G-------------------SCA--GVFKC-QSGATQM 688 (725)
Q Consensus 639 h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t--------~-------------------~~v--~~~~~-~~~V~sv 688 (725)
|...|+|..|+|..+ ++++++-|-+|||||+.. + .++ ..+++ ..+|+-+
T Consensus 134 HnHYVMcAqFhptED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwa 212 (1202)
T KOG0292|consen 134 HNHYVMCAQFHPTED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWA 212 (1202)
T ss_pred CceEEEeeccCCccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceE
Confidence 999999999999866 889999999999999852 1 111 12233 5679999
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCe--EEEEEeCCC
Q 004885 689 RFQPRLGRILAAAIENYISILDVETQV--CRLKLQVSH 724 (725)
Q Consensus 689 ~fspdg~~Lla~s~Dg~V~IwDl~tg~--~v~~l~GH~ 724 (725)
+|+|.-..|++|+.|..|++|.+...+ .+.+..||-
T Consensus 213 AfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~ 250 (1202)
T KOG0292|consen 213 AFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHY 250 (1202)
T ss_pred EecCCcceEEecCCcceeeEEEeccccceeehhhhccc
Confidence 999998999999999999999986543 455566664
No 58
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.87 E-value=4.6e-20 Score=184.56 Aligned_cols=214 Identities=16% Similarity=0.186 Sum_probs=185.3
Q ss_pred ccccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEec
Q 004885 473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP 552 (725)
Q Consensus 473 ~l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 552 (725)
.+...+.++.+-+.|+.+|. +|.+++.|..+.+|.+.++ +.+-+++
T Consensus 4 i~l~GHERplTqiKyN~eGD---------------LlFscaKD~~~~vw~s~nG-------------------erlGty~ 49 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGD---------------LLFSCAKDSTPTVWYSLNG-------------------ERLGTYD 49 (327)
T ss_pred cccccCccccceEEecCCCc---------------EEEEecCCCCceEEEecCC-------------------ceeeeec
Confidence 34456788889999999887 9999999999999966555 4677899
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-----CCeEEEEECC
Q 004885 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-----DRTVRVWDTE 627 (725)
Q Consensus 553 ~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-----DgtIrvWDl~ 627 (725)
+|++.|.||..+-+.+++++|+.|.++++||+++++.+..++- ..+|..+.|++++.+++.+.. .+.|.++|++
T Consensus 50 GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~ 128 (327)
T KOG0643|consen 50 GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIR 128 (327)
T ss_pred CCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEcc
Confidence 9999999999999999999999999999999999999999874 678999999999998877754 4689999998
Q ss_pred CCC------eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEE-e-cCCCeEEEEEecCCCEEEE
Q 004885 628 NPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-K-CQSGATQMRFQPRLGRILA 699 (725)
Q Consensus 628 ~~~------~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~-~-~~~~V~sv~fspdg~~Lla 699 (725)
... .++..+..+...++.+.|.|.+. .+++|..||.|.+||++++..+..- + +...|+.|++++|..++++
T Consensus 129 ~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT 207 (327)
T KOG0643|consen 129 DDSSDIDSEEPYLKIPTPDSKITSALWGPLGE-TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFIT 207 (327)
T ss_pred CChhhhcccCceEEecCCccceeeeeecccCC-EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEe
Confidence 432 35777778889999999999988 6669999999999999998554433 2 3668999999999999999
Q ss_pred EEcCCeEEEEECCCCeEEEEEeC
Q 004885 700 AAIENYISILDVETQVCRLKLQV 722 (725)
Q Consensus 700 ~s~Dg~V~IwDl~tg~~v~~l~G 722 (725)
++.|.+-++||+++-++++++..
T Consensus 208 ~s~Dttakl~D~~tl~v~Kty~t 230 (327)
T KOG0643|consen 208 GSKDTTAKLVDVRTLEVLKTYTT 230 (327)
T ss_pred cccCccceeeeccceeeEEEeee
Confidence 99999999999999999998853
No 59
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=2.5e-21 Score=218.75 Aligned_cols=172 Identities=24% Similarity=0.374 Sum_probs=151.6
Q ss_pred eEEEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--------------------------------C------
Q 004885 547 EFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--------------------------------F------ 587 (725)
Q Consensus 547 ~~~~l~-~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~--------------------------------~------ 587 (725)
....+. +|.+.|.|+.||+||+|||+||.|+.|+||.+.. .
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 334455 8999999999999999999999999999997643 0
Q ss_pred ----------------------eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEE
Q 004885 588 ----------------------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645 (725)
Q Consensus 588 ----------------------~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~s 645 (725)
++++.|.||.+.|.+|.|+.+ .+|++++.|+|||+|++.... |+.+|. |...|+|
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~-CL~~F~-HndfVTc 414 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKE-CLKVFS-HNDFVTC 414 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcc-eeeEEe-cCCeeEE
Confidence 122345789999999999975 689999999999999999877 888887 9999999
Q ss_pred EEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 646 l~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
|+|+|..+.+|++|+-|+.||||++...+.+.-...+.-|+++||.|||++.++|+.+|.+++|+.+..+.+..+.
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH 490 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence 9999998889999999999999999998888887778899999999999999999999999999999877766554
No 60
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.87 E-value=8.9e-21 Score=215.85 Aligned_cols=190 Identities=22% Similarity=0.322 Sum_probs=168.7
Q ss_pred CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (725)
Q Consensus 505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl 584 (725)
.+.++.+|+.|.++++|+. .+......+.+|.+.|.|+.. ...++++|+.|.+|+||++
T Consensus 260 ~~~~lvsgS~D~t~rvWd~-------------------~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v 318 (537)
T KOG0274|consen 260 GGDKLVSGSTDKTERVWDC-------------------STGECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDV 318 (537)
T ss_pred CCCEEEEEecCCcEEeEec-------------------CCCcEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEec
Confidence 3568999999999999943 333677888999999999998 4568888999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc
Q 004885 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (725)
Q Consensus 585 ~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~ 664 (725)
.++.++.++.+|.++|.+|.++ +.++++|+.|++|+|||+.+.+ ++..+.+|...|.++.+... ..+++|+.|++
T Consensus 319 ~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~-cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~ 393 (537)
T KOG0274|consen 319 TNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGK-CLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTT 393 (537)
T ss_pred cCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhce-eeeeecCCcceEEEEEecCc--ceEEeeeeccc
Confidence 9999999999999999999997 7899999999999999999887 89999999999999988875 36779999999
Q ss_pred EEEEECCCC-eeEEEEecCCC-eEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885 665 IRYWSINNG-SCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQV 722 (725)
Q Consensus 665 I~IwDl~t~-~~v~~~~~~~~-V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~G 722 (725)
|++||+++. +|+.++.++.. |..+.+ .+.+|++++.|++|++||.++++|++.+++
T Consensus 394 IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 394 IKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEG 451 (537)
T ss_pred eEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeecc
Confidence 999999999 99999988555 444433 457899999999999999999999999999
No 61
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.7e-21 Score=213.67 Aligned_cols=207 Identities=15% Similarity=0.283 Sum_probs=178.1
Q ss_pred CCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004885 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (725)
Q Consensus 504 ~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWd 583 (725)
..++++.+||.|+.|++|....+... ..-.....++.|++.|.++....+++.|++||.|-+|++|+
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~-------------~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~ 101 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNE-------------PSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWN 101 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCC-------------cccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEee
Confidence 34569999999999999965544211 11124567789999999999999999999999999999999
Q ss_pred CCCC--eEEEEeccCCCCeEEEEE-cCCCCEEEEEeCCCeEEEEECCCCCe---------eeEEEe-cCCCCeEEEEEcc
Q 004885 584 TESF--TVKSTLEEHTQWITDVRF-SPSLSRLATSSADRTVRVWDTENPDY---------SLRTFT-GHSTTVMSLDFHP 650 (725)
Q Consensus 584 l~~~--~~i~~l~~H~~~V~~Iaf-sPd~~~Lasgs~DgtIrvWDl~~~~~---------~l~~~~-~h~~~V~sl~fsP 650 (725)
.... -++.++..|...|.|+++ .++...+++|+.|+.|.|||++++.. ....+. ++...|.+++..+
T Consensus 102 ~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~ 181 (735)
T KOG0308|consen 102 AHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ 181 (735)
T ss_pred cccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC
Confidence 9876 678889999999999999 77889999999999999999997631 112222 7889999999999
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885 651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH 724 (725)
Q Consensus 651 ~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~ 724 (725)
.|. ++++|+..+.|++||.++++.+..+.+ ...|..+..++||..++++++||+|++||+.-.+|++++..|+
T Consensus 182 t~t-~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~ 255 (735)
T KOG0308|consen 182 TGT-IIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHK 255 (735)
T ss_pred cce-EEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEecc
Confidence 985 888999999999999999998888876 6679999999999999999999999999999999999999996
No 62
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.86 E-value=1.2e-20 Score=217.78 Aligned_cols=220 Identities=20% Similarity=0.315 Sum_probs=182.0
Q ss_pred eeEEEEecCCCccccccCCccCCCCcEEEEee--CCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeE
Q 004885 482 KSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGS--LDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (725)
Q Consensus 482 ~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs--~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~ 559 (725)
+-.+..+|++. -+++|+ .|+.+++|....-. +..+..+..--+.+.+...|.+.|+
T Consensus 16 IfSIdv~pdg~---------------~~aTgGq~~d~~~~iW~~~~vl-------~~~~~~~~~l~k~l~~m~~h~~sv~ 73 (942)
T KOG0973|consen 16 IFSIDVHPDGV---------------KFATGGQVLDGGIVIWSQDPVL-------DEKEEKNENLPKHLCTMDDHDGSVN 73 (942)
T ss_pred EEEEEecCCce---------------eEecCCccccccceeecccccc-------chhhhhhcccchhheeeccccCcee
Confidence 44566667666 779999 99999999432111 0001111112356778889999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCC------------------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 004885 560 SCHFSPDGKLLATGGHDKKAVLWCTES------------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 621 (725)
Q Consensus 560 ~i~fSpdg~~LaSgs~Dg~V~IWdl~~------------------~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtI 621 (725)
|+.|++||++||+||+|+.|.||.... ++++.++.+|...|.+++|+|++.+|++++.|++|
T Consensus 74 CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsV 153 (942)
T KOG0973|consen 74 CVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSV 153 (942)
T ss_pred EEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceE
Confidence 999999999999999999999998751 34678899999999999999999999999999999
Q ss_pred EEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-------CCCeEEEEEecCC
Q 004885 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRL 694 (725)
Q Consensus 622 rvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-------~~~V~sv~fspdg 694 (725)
.||+..+.+ ++..+.+|.+.|..+.|+|-|+ +||+-++|++|+||.+.+..+.+.+.. ...+..+.|+|||
T Consensus 154 iiwn~~tF~-~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG 231 (942)
T KOG0973|consen 154 IIWNAKTFE-LLKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDG 231 (942)
T ss_pred EEEccccce-eeeeeecccccccceEECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCc
Confidence 999999995 8999999999999999999998 778999999999999888777766653 3458899999999
Q ss_pred CEEEEEEc----CCeEEEEECCCCeEEEEEeCCCC
Q 004885 695 GRILAAAI----ENYISILDVETQVCRLKLQVSHS 725 (725)
Q Consensus 695 ~~Lla~s~----Dg~V~IwDl~tg~~v~~l~GH~s 725 (725)
.+|++... -.++.|.+..+.++-..|-||++
T Consensus 232 ~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~ 266 (942)
T KOG0973|consen 232 HHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSA 266 (942)
T ss_pred CeecchhhccCCcceeEEEecCCceeeeeeecCCC
Confidence 99988754 35799999999999999999974
No 63
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.86 E-value=9.3e-21 Score=201.44 Aligned_cols=193 Identities=23% Similarity=0.394 Sum_probs=162.9
Q ss_pred EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC-
Q 004885 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE- 585 (725)
Q Consensus 508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~- 585 (725)
.+++|+.|+.|++|+...... +.........+.+|.+.|.+++|++ +..+|++++.|+.+.|||++
T Consensus 192 ~Lls~~~d~~i~lwdi~~~~~------------~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~ 259 (422)
T KOG0264|consen 192 TLLSGSDDHTICLWDINAESK------------EDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRS 259 (422)
T ss_pred eEeeccCCCcEEEEecccccc------------CCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCC
Confidence 678899999999996654421 1334556778899999999999999 56689999999999999999
Q ss_pred -CCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC
Q 004885 586 -SFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (725)
Q Consensus 586 -~~~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg 663 (725)
+.++.....+|.+.|.|++|.| ++..||||+.|++|++||+++...++.++.+|...|.+|.|+|....+|++++.|+
T Consensus 260 ~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~ 339 (422)
T KOG0264|consen 260 NTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDR 339 (422)
T ss_pred CCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCC
Confidence 5667778889999999999999 57788999999999999999998899999999999999999999999999999999
Q ss_pred cEEEEECCCC------------eeEEEEec---CCCeEEEEEecCCCEEEE-EEcCCeEEEEECC
Q 004885 664 EIRYWSINNG------------SCAGVFKC---QSGATQMRFQPRLGRILA-AAIENYISILDVE 712 (725)
Q Consensus 664 ~I~IwDl~t~------------~~v~~~~~---~~~V~sv~fspdg~~Lla-~s~Dg~V~IwDl~ 712 (725)
.+.|||+..- .+...|.| ...|..+.|+|+..++++ ++.|+.+.||...
T Consensus 340 rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 340 RLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 9999999631 12223433 556999999999887554 4668999999875
No 64
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.7e-20 Score=207.30 Aligned_cols=210 Identities=21% Similarity=0.322 Sum_probs=184.4
Q ss_pred CCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecC-CCCC
Q 004885 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA-STSK 557 (725)
Q Consensus 479 s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-H~~~ 557 (725)
...++++.|+++|. +|+.|..++.|.+| +....+.+..+.+ |...
T Consensus 217 ~~~vtSv~ws~~G~---------------~LavG~~~g~v~iw-------------------D~~~~k~~~~~~~~h~~r 262 (484)
T KOG0305|consen 217 EELVTSVKWSPDGS---------------HLAVGTSDGTVQIW-------------------DVKEQKKTRTLRGSHASR 262 (484)
T ss_pred CCceEEEEECCCCC---------------EEEEeecCCeEEEE-------------------ehhhccccccccCCcCce
Confidence 45566666666665 99999999999999 3334455566667 9999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE-eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEE
Q 004885 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~-l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~ 636 (725)
|-|++|+ +..+.+|+.|+.|.++|++....... +.+|...|+.+.|++|+.+|++|+.|..+.|||..... ++..+
T Consensus 263 vg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~-p~~~~ 339 (484)
T KOG0305|consen 263 VGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE-PKFTF 339 (484)
T ss_pred eEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc-ccEEE
Confidence 9999996 78899999999999999988655444 88999999999999999999999999999999997766 78999
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEe--CCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEc--CCeEEEEECC
Q 004885 637 TGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI--ENYISILDVE 712 (725)
Q Consensus 637 ~~h~~~V~sl~fsP~g~~llaSgs--~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~--Dg~V~IwDl~ 712 (725)
..|.+.|.+++|+|....+||+|+ .|++|++||..++.++..+....-|.+|.|++..+.|+++.. ++.|.||+..
T Consensus 340 ~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~p 419 (484)
T KOG0305|consen 340 TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYP 419 (484)
T ss_pred eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecc
Confidence 999999999999999888999876 689999999999999999998899999999999888887644 7899999999
Q ss_pred CCeEEEEEeCCCC
Q 004885 713 TQVCRLKLQVSHS 725 (725)
Q Consensus 713 tg~~v~~l~GH~s 725 (725)
+.+.+..+.||..
T Consensus 420 s~~~~~~l~gH~~ 432 (484)
T KOG0305|consen 420 SMKLVAELLGHTS 432 (484)
T ss_pred ccceeeeecCCcc
Confidence 9999999999974
No 65
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.3e-19 Score=183.74 Aligned_cols=224 Identities=19% Similarity=0.237 Sum_probs=177.4
Q ss_pred CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccc-----------------------
Q 004885 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVG----------------------- 534 (725)
Q Consensus 478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~----------------------- 534 (725)
-...+..+.|+.+|. ++.+++.|..+++|+..++...+....
T Consensus 13 ~~~~i~sl~fs~~G~---------------~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk 77 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGL---------------LLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTK 77 (311)
T ss_pred CCCceeEEEecCCCC---------------EEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCC
Confidence 355678888888887 788888899999997776632221111
Q ss_pred -----cccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCC
Q 004885 535 -----RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 609 (725)
Q Consensus 535 -----~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~ 609 (725)
++... .+-+.++.+.||...|+.|+.+|-+..+++++.|++|++||++..++...+.- ..-..++|+|.|
T Consensus 78 ~d~tIryLsl---~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~--~~~pi~AfDp~G 152 (311)
T KOG1446|consen 78 EDDTIRYLSL---HDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL--SGRPIAAFDPEG 152 (311)
T ss_pred CCCceEEEEe---ecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec--CCCcceeECCCC
Confidence 11111 22356788999999999999999889999999999999999998888776643 334567899999
Q ss_pred CEEEEEeCCCeEEEEECCCC-CeeeEEEe---cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC---
Q 004885 610 SRLATSSADRTVRVWDTENP-DYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--- 682 (725)
Q Consensus 610 ~~Lasgs~DgtIrvWDl~~~-~~~l~~~~---~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~--- 682 (725)
-++|++.....|++||++.- +.+..+|. +.....+.|.|+|+|+++|++ ...+.+++.|.-+|..+.++...
T Consensus 153 LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLls-T~~s~~~~lDAf~G~~~~tfs~~~~~ 231 (311)
T KOG1446|consen 153 LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLS-TNASFIYLLDAFDGTVKSTFSGYPNA 231 (311)
T ss_pred cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEE-eCCCcEEEEEccCCcEeeeEeeccCC
Confidence 99999998889999999875 23445544 335678999999999977755 45788999999999998888752
Q ss_pred C-CeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885 683 S-GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQV 722 (725)
Q Consensus 683 ~-~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~G 722 (725)
. -..+.+|.||+.++++++.||+|.||++++|..+..+.|
T Consensus 232 ~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 232 GNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred CCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 1 235788999999999999999999999999999999988
No 66
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.85 E-value=3.5e-22 Score=203.33 Aligned_cols=168 Identities=24% Similarity=0.419 Sum_probs=152.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe--------ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004885 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--------EEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (725)
Q Consensus 553 ~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l--------~~H~~~V~~IafsPd~~~Lasgs~DgtIrvW 624 (725)
+..+.+.|..|||||.+|++|+-||.|.|||.-+++....+ --+..+|.||.|+.|...|++|+.||.|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 34566899999999999999999999999999888765443 3467899999999999999999999999999
Q ss_pred ECCCCCeeeEEEe-cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEc
Q 004885 625 DTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI 702 (725)
Q Consensus 625 Dl~~~~~~l~~~~-~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~ 702 (725)
.++++. |++.|. .|...|+|+.|+.|+..++ +++.|.+|||.-++.|+++..|++ ...|+.+.|.+||.+++++++
T Consensus 291 ri~tG~-ClRrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSs 368 (508)
T KOG0275|consen 291 RIETGQ-CLRRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASS 368 (508)
T ss_pred EEecch-HHHHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecC
Confidence 999998 788876 8999999999999988555 889999999999999999999997 566999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEeC
Q 004885 703 ENYISILDVETQVCRLKLQV 722 (725)
Q Consensus 703 Dg~V~IwDl~tg~~v~~l~G 722 (725)
||+|+||+.++.+|+.+|+.
T Consensus 369 DgtvkvW~~KtteC~~Tfk~ 388 (508)
T KOG0275|consen 369 DGTVKVWHGKTTECLSTFKP 388 (508)
T ss_pred CccEEEecCcchhhhhhccC
Confidence 99999999999999998863
No 67
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=4.7e-22 Score=220.07 Aligned_cols=197 Identities=21% Similarity=0.353 Sum_probs=176.2
Q ss_pred CCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004885 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (725)
Q Consensus 504 ~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWd 583 (725)
...+++++|++|..+.+|..... ..+..+.+|..+|.|+.|+++..+|++|+.||+|++||
T Consensus 38 ~s~r~~~~Gg~~~k~~L~~i~kp-------------------~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 38 KSSRSLVTGGEDEKVNLWAIGKP-------------------NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWD 98 (825)
T ss_pred ccceeeccCCCceeeccccccCC-------------------chhheeeccCCcceeeecCcchhhhcccccCCceeeee
Confidence 34579999999999999933222 22234789999999999999999999999999999999
Q ss_pred CCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC
Q 004885 584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (725)
Q Consensus 584 l~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg 663 (725)
++..+.++++.+|...|..+.|+|-+.++++|+.|+-+++||++... |...+.+|...|..+.|+|+|+ +++++++|.
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G-c~~~~~s~~~vv~~l~lsP~Gr-~v~~g~ed~ 176 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG-CSHTYKSHTRVVDVLRLSPDGR-WVASGGEDN 176 (825)
T ss_pred hhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC-ceeeecCCcceeEEEeecCCCc-eeeccCCcc
Confidence 99999999999999999999999999999999999999999999877 8999999999999999999998 677899899
Q ss_pred cEEEEECCCCeeEEEEe-cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 664 EIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 664 ~I~IwDl~t~~~v~~~~-~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
+|+|||+..|+.+..|+ +.+.+.++.|+|..-.+..|+.|++|++||+++.+.|-..+
T Consensus 177 tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 177 TVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK 235 (825)
T ss_pred eeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccC
Confidence 99999999999999999 47889999999997777788889999999999887776544
No 68
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.2e-20 Score=197.78 Aligned_cols=218 Identities=18% Similarity=0.245 Sum_probs=189.1
Q ss_pred ccccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEec
Q 004885 473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP 552 (725)
Q Consensus 473 ~l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 552 (725)
.....++..+.-+.|+++|+ ++|+++.|.+.-+|....+ ..++.++++.
T Consensus 218 qil~~htdEVWfl~FS~nGk---------------yLAsaSkD~Taiiw~v~~d----------------~~~kl~~tlv 266 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGK---------------YLASASKDSTAIIWIVVYD----------------VHFKLKKTLV 266 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCe---------------eEeeccCCceEEEEEEecC----------------cceeeeeeee
Confidence 46677888999999999998 9999999999999955443 1267889999
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 004885 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (725)
Q Consensus 553 ~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~-~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~ 631 (725)
+|..+|..|.||||.++|++|+.|..+.+||+.++.+.+.+. +|...+.+++|.||+..+++|+.|++|..||++...
T Consensus 267 gh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~- 345 (519)
T KOG0293|consen 267 GHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI- 345 (519)
T ss_pred cccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-
Confidence 999999999999999999999999999999999998887764 346889999999999999999999999999998643
Q ss_pred eeEEEecCC-CCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004885 632 SLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD 710 (725)
Q Consensus 632 ~l~~~~~h~-~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwD 710 (725)
+....+-. ..|.+++..+||+++++++ .|..|++|+.++..++..+..+.+|++++.+.+++++++--.+..|++||
T Consensus 346 -~~~W~gvr~~~v~dlait~Dgk~vl~v~-~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWD 423 (519)
T KOG0293|consen 346 -LGNWEGVRDPKVHDLAITYDGKYVLLVT-VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWD 423 (519)
T ss_pred -hhcccccccceeEEEEEcCCCcEEEEEe-cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEee
Confidence 34444332 4599999999999777555 69999999999887777777789999999999999999999999999999
Q ss_pred CCCCeEEEEEeCCC
Q 004885 711 VETQVCRLKLQVSH 724 (725)
Q Consensus 711 l~tg~~v~~l~GH~ 724 (725)
++..+.+..+.||.
T Consensus 424 l~e~~lv~kY~Ghk 437 (519)
T KOG0293|consen 424 LEENKLVRKYFGHK 437 (519)
T ss_pred cchhhHHHHhhccc
Confidence 99999999999985
No 69
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.85 E-value=1.4e-21 Score=208.57 Aligned_cols=172 Identities=21% Similarity=0.363 Sum_probs=157.3
Q ss_pred eeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 004885 545 FTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622 (725)
Q Consensus 545 ~~~~~~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~-~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIr 622 (725)
-+.+.++.+|+..|+++.|.| .+.+|++|+.|+.|+||++.. ++++++|.+|..+|.+++|+.++..|+++++|+.|+
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK 283 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence 356788999999999999999 899999999999999999976 899999999999999999999999999999999999
Q ss_pred EEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEE
Q 004885 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAA 701 (725)
Q Consensus 623 vWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s 701 (725)
+||++++. ++..|.. ...++|+.|+|++.++|++|+.|+.|+.||+++++.+..+.. -+.|..|.|-++|.++++++
T Consensus 284 lwDtETG~-~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 284 LWDTETGQ-VLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred eeccccce-EEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 99999998 6766653 356899999999978999999999999999999999888876 57799999999999999999
Q ss_pred cCCeEEEEECCCCeEEE
Q 004885 702 IENYISILDVETQVCRL 718 (725)
Q Consensus 702 ~Dg~V~IwDl~tg~~v~ 718 (725)
.|++|+||+.+.+..+.
T Consensus 362 Ddks~riWe~~~~v~ik 378 (503)
T KOG0282|consen 362 DDKSVRIWENRIPVPIK 378 (503)
T ss_pred cCccEEEEEcCCCccch
Confidence 99999999999875544
No 70
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=6.8e-20 Score=186.14 Aligned_cols=216 Identities=20% Similarity=0.297 Sum_probs=162.6
Q ss_pred ccccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEec
Q 004885 473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP 552 (725)
Q Consensus 473 ~l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 552 (725)
.+.-.+...++.+.|+|... .++++||||++||+|...+.. . + .-+...
T Consensus 21 ev~~pP~DsIS~l~FSP~~~--------------~~~~A~SWD~tVR~wevq~~g---------------~-~-~~ka~~ 69 (347)
T KOG0647|consen 21 EVPNPPEDSISALAFSPQAD--------------NLLAAGSWDGTVRIWEVQNSG---------------Q-L-VPKAQQ 69 (347)
T ss_pred ecCCCcccchheeEeccccC--------------ceEEecccCCceEEEEEecCC---------------c-c-cchhhh
Confidence 45556667888999999222 478899999999999554431 0 0 114456
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEECCCCC
Q 004885 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENPD 630 (725)
Q Consensus 553 ~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~--~Lasgs~DgtIrvWDl~~~~ 630 (725)
.|.++|.|++|+.||..+++|+.|+.+++||+.++. +..+-.|.++|.++.|-+... .|+||+.|++|+.||.+...
T Consensus 70 ~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~ 148 (347)
T KOG0647|consen 70 SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN 148 (347)
T ss_pred ccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC
Confidence 799999999999999999999999999999999985 456778999999999988654 89999999999999998654
Q ss_pred eeeEEE-------------------------------------ecC----CCCeEEEEEccCCCeEEEEEeCCCcEEEEE
Q 004885 631 YSLRTF-------------------------------------TGH----STTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669 (725)
Q Consensus 631 ~~l~~~-------------------------------------~~h----~~~V~sl~fsP~g~~llaSgs~Dg~I~IwD 669 (725)
++.++ +.+ ...+.||+...+... ++.|+.+|.+.|..
T Consensus 149 -pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~-~alGsiEGrv~iq~ 226 (347)
T KOG0647|consen 149 -PVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDG-FALGSIEGRVAIQY 226 (347)
T ss_pred -eeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCc-eEeeeecceEEEEe
Confidence 11111 111 123677877777663 46788888888888
Q ss_pred CCCC--eeEEEEecCC----------CeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885 670 INNG--SCAGVFKCQS----------GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQV 722 (725)
Q Consensus 670 l~t~--~~v~~~~~~~----------~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~G 722 (725)
++.+ +.-.+|+++. .|.+|+|+|..+.|+++++||++.+||-.....+++.+-
T Consensus 227 id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~ 291 (347)
T KOG0647|consen 227 IDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSET 291 (347)
T ss_pred cCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCc
Confidence 8765 3333444422 378899999999999999999999999776655554443
No 71
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.84 E-value=1.1e-19 Score=188.48 Aligned_cols=175 Identities=22% Similarity=0.282 Sum_probs=159.6
Q ss_pred eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004885 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (725)
Q Consensus 546 ~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWD 625 (725)
..+.+|..|++.|++|+.+|+.++++||+.|...+||++.++.....+.+|...|+++.|+.++.+|+||+.+|.|+||+
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCC
Q 004885 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIEN 704 (725)
Q Consensus 626 l~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg 704 (725)
..++. ....+......|.-+.|||.+. +|++|+.||.|.+|.+.++.....+.+ ..++++=+|.|+|+.++++..||
T Consensus 135 ~stg~-~~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dg 212 (399)
T KOG0296|consen 135 VSTGG-EQWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDG 212 (399)
T ss_pred cccCc-eEEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCc
Confidence 99988 4555555567788899999877 778999999999999999777777765 67799999999999999999999
Q ss_pred eEEEEECCCCeEEEEEeC
Q 004885 705 YISILDVETQVCRLKLQV 722 (725)
Q Consensus 705 ~V~IwDl~tg~~v~~l~G 722 (725)
+|++||++++.+++++.+
T Consensus 213 ti~~Wn~ktg~p~~~~~~ 230 (399)
T KOG0296|consen 213 TIIVWNPKTGQPLHKITQ 230 (399)
T ss_pred eEEEEecCCCceeEEecc
Confidence 999999999999998874
No 72
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.84 E-value=7.4e-20 Score=190.55 Aligned_cols=198 Identities=17% Similarity=0.277 Sum_probs=170.2
Q ss_pred CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC---CCEEEEEeCCCcEEEE
Q 004885 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD---GKLLATGGHDKKAVLW 582 (725)
Q Consensus 506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpd---g~~LaSgs~Dg~V~IW 582 (725)
..++.+|++||.+++|.. ..+....+.+|+++|.+++|.-. ...|++++.|.++++|
T Consensus 115 ~~~IltgsYDg~~riWd~--------------------~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw 174 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDL--------------------KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLW 174 (423)
T ss_pred CceEEEeecCCeeEEEec--------------------CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEE
Confidence 679999999999999922 23577888999999998888542 2369999999999999
Q ss_pred ECCCCeE----EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC------------------------CeeeE
Q 004885 583 CTESFTV----KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP------------------------DYSLR 634 (725)
Q Consensus 583 dl~~~~~----i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~------------------------~~~l~ 634 (725)
-++.++. +....||...|-+|+..+++.++++|+.|.+|+||+..+. ..++.
T Consensus 175 ~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 175 KWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred EecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 8876543 3344599999999999999999999999999999993211 12577
Q ss_pred EEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ 714 (725)
Q Consensus 635 ~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg 714 (725)
++.+|..+|.+|.|++. ..+++++.|.+|++||+.++.++..+.+....+++..+|....|++|+.|..|++||-+++
T Consensus 255 tl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~ 332 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG 332 (423)
T ss_pred EecccccceeeEEEcCC--CceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCC
Confidence 88999999999999984 3678999999999999999999999999999999999999899999999999999999987
Q ss_pred ---eEEEEEeCCCC
Q 004885 715 ---VCRLKLQVSHS 725 (725)
Q Consensus 715 ---~~v~~l~GH~s 725 (725)
-..++|-||.+
T Consensus 333 ~gs~v~~s~~gH~n 346 (423)
T KOG0313|consen 333 DGSVVSQSLIGHKN 346 (423)
T ss_pred CCceeEEeeecchh
Confidence 57789999975
No 73
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.84 E-value=1.6e-19 Score=190.64 Aligned_cols=230 Identities=14% Similarity=0.196 Sum_probs=181.0
Q ss_pred cccCCCCCeeEEEEecCCCc--------cccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCcee
Q 004885 474 LQHNGASSKSLLMFGSDGMG--------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545 (725)
Q Consensus 474 l~~s~s~~~s~l~fs~dg~~--------~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~ 545 (725)
....++.+++++.|.-.... ...+....+......+.+++.|..|++|.++..
T Consensus 233 ~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~------------------- 293 (506)
T KOG0289|consen 233 KILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS------------------- 293 (506)
T ss_pred cceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc-------------------
Confidence 33444555555555443321 122233333444557889999999999955443
Q ss_pred eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccC--CCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 004885 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRV 623 (725)
Q Consensus 546 ~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H--~~~V~~IafsPd~~~Lasgs~DgtIrv 623 (725)
.+...+..|..+|+.+..+|.|.||++++.|++..+.|++++..+...... .-.+++.+|||||-+|.+|..|+.|+|
T Consensus 294 s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vki 373 (506)
T KOG0289|consen 294 SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKI 373 (506)
T ss_pred cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEE
Confidence 244566789999999999999999999999999999999999887665432 235899999999999999999999999
Q ss_pred EECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEE
Q 004885 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAA 701 (725)
Q Consensus 624 WDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s 701 (725)
||+.+.. .+..|.+|.++|..|.|+.+| |+++++++|++|++||+|.-+...++.. ..+|.+++|++.|.+|++++
T Consensus 374 wdlks~~-~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g 451 (506)
T KOG0289|consen 374 WDLKSQT-NVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG 451 (506)
T ss_pred EEcCCcc-ccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec
Confidence 9999988 789999999999999999886 4778888899999999998887777765 34699999999999999998
Q ss_pred cCCeEEEEECC--CCeEEEEEeCCC
Q 004885 702 IENYISILDVE--TQVCRLKLQVSH 724 (725)
Q Consensus 702 ~Dg~V~IwDl~--tg~~v~~l~GH~ 724 (725)
.|=.|++++-. ...++..+.-|.
T Consensus 452 ~~l~Vy~~~k~~k~W~~~~~~~~~s 476 (506)
T KOG0289|consen 452 SDLQVYICKKKTKSWTEIKELADHS 476 (506)
T ss_pred ceeEEEEEecccccceeeehhhhcc
Confidence 77777777743 347777776665
No 74
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.84 E-value=7.5e-20 Score=181.46 Aligned_cols=197 Identities=23% Similarity=0.334 Sum_probs=169.5
Q ss_pred CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004885 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (725)
Q Consensus 506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~ 585 (725)
.-+|++++.|.+||.|. ..+.....++....+.|+.+...||++.||+++. -.||+||++
T Consensus 10 ~viLvsA~YDhTIRfWq-------------------a~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~ 69 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQ-------------------ALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLN 69 (311)
T ss_pred ceEEEeccCcceeeeee-------------------hhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEcc
Confidence 34899999999999993 3333566777777788999999999999999985 479999998
Q ss_pred CCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC
Q 004885 586 SFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (725)
Q Consensus 586 ~~~--~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg 663 (725)
+.+ ++.+|++|+..|+.|.|..++++++||+.||++||||++... +-+.|. |..+|++|..+|+...+| +|+.+|
T Consensus 70 S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~-~qR~~~-~~spVn~vvlhpnQteLi-s~dqsg 146 (311)
T KOG0315|consen 70 SNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS-CQRNYQ-HNSPVNTVVLHPNQTELI-SGDQSG 146 (311)
T ss_pred CCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc-cchhcc-CCCCcceEEecCCcceEE-eecCCC
Confidence 754 689999999999999999999999999999999999999966 555554 679999999999977554 999999
Q ss_pred cEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC------eEEEEEeCCCC
Q 004885 664 EIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQ------VCRLKLQVSHS 725 (725)
Q Consensus 664 ~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg------~~v~~l~GH~s 725 (725)
.|+|||+.+..|.+.+.. ...|.++.+.|||.+++++...|..+||++-+. ++++.|+.|++
T Consensus 147 ~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~ 216 (311)
T KOG0315|consen 147 NIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNG 216 (311)
T ss_pred cEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccc
Confidence 999999999888777654 567999999999999999999999999998764 67778888864
No 75
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.84 E-value=6.8e-20 Score=203.70 Aligned_cols=204 Identities=20% Similarity=0.300 Sum_probs=170.8
Q ss_pred cCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 004885 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (725)
Q Consensus 502 ~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~I 581 (725)
+.+....+++||.|.+|+.|...--.+...... +...+...+++ .-.+.|.|+.+||||++||++--|.+|+|
T Consensus 462 ~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~------k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkV 534 (888)
T KOG0306|consen 462 LSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQK------KVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKV 534 (888)
T ss_pred ecCCCCceEEecCCcEEEEEeEEEEeccCcccc------eeeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEE
Confidence 345556789999999999994321111000000 01222222333 23567999999999999999999999999
Q ss_pred EECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeC
Q 004885 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (725)
Q Consensus 582 Wdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~ 661 (725)
|-+++.+....+.||.-+|.|+.++||++.++||+.|+.|+||-++-+. |-..+.+|...|++|.|.|.. ++|++|+.
T Consensus 535 yflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD-CHKS~fAHdDSvm~V~F~P~~-~~FFt~gK 612 (888)
T KOG0306|consen 535 YFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD-CHKSFFAHDDSVMSVQFLPKT-HLFFTCGK 612 (888)
T ss_pred EEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccch-hhhhhhcccCceeEEEEcccc-eeEEEecC
Confidence 9999999999999999999999999999999999999999999999988 889999999999999999974 58889999
Q ss_pred CCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885 662 NSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ 714 (725)
Q Consensus 662 Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg 714 (725)
|+.|+-||-....++.++.. +..|++++..|+|.++++++.|..|++|.....
T Consensus 613 D~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 613 DGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred cceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCc
Confidence 99999999999999999986 778999999999999999999999999987653
No 76
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.84 E-value=7.3e-20 Score=193.10 Aligned_cols=194 Identities=16% Similarity=0.211 Sum_probs=171.4
Q ss_pred cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004885 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (725)
Q Consensus 507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~ 586 (725)
.++.+|+.|.++.+| +..+-..+.+++||.-.|+.+.|+|+...+++++.|..|+||.+..
T Consensus 232 ~~ilTGG~d~~av~~-------------------d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~ 292 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLF-------------------DKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL 292 (506)
T ss_pred CcceecCCCCceEEE-------------------ecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc
Confidence 478999999999999 3334467788999999999999999999999999999999999988
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEec--CCCCeEEEEEccCCCeEEEEEeCCCc
Q 004885 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSE 664 (725)
Q Consensus 587 ~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~--h~~~V~sl~fsP~g~~llaSgs~Dg~ 664 (725)
..+......|..+|+.+..+|.++||++++.|+++.+.|++++. ++..... ..-.+++++|||||- +|++|..|+.
T Consensus 293 ~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~-~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~ 370 (506)
T KOG0289|consen 293 SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGS-QLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGV 370 (506)
T ss_pred ccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCc-EEEEEeeccccceeEEeeEcCCce-EEeccCCCce
Confidence 77777888999999999999999999999999999999999988 3433332 223589999999987 8899999999
Q ss_pred EEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 665 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 665 I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
|+|||+.++..+..|.+ .++|..|.|+.+|.||++++.|+.|++||+|.-+.+.+|.
T Consensus 371 vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 371 VKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred EEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee
Confidence 99999999998888886 6789999999999999999999999999999887766664
No 77
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.3e-20 Score=210.10 Aligned_cols=202 Identities=17% Similarity=0.348 Sum_probs=170.7
Q ss_pred CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 004885 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT 584 (725)
Q Consensus 506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl 584 (725)
.++|++++..|.|.+|+.... ..-+.+..+..|...|+++.|++ .-.+|++||.||+|++||+
T Consensus 100 ~NlIAT~s~nG~i~vWdlnk~----------------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~Dl 163 (839)
T KOG0269|consen 100 SNLIATCSTNGVISVWDLNKS----------------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDL 163 (839)
T ss_pred hhhheeecCCCcEEEEecCcc----------------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEee
Confidence 468999999999999954332 11134456789999999999998 4568999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC
Q 004885 585 ESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (725)
Q Consensus 585 ~~~~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg 663 (725)
+..+...++.+....|.+|.|+| .+.+|+++...|.+.+||++.+..+...+.+|.++|.|+.|+|++. +||+|+.|+
T Consensus 164 R~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~-~lATGGRDK 242 (839)
T KOG0269|consen 164 RSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE-WLATGGRDK 242 (839)
T ss_pred ecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCc-eeeecCCCc
Confidence 99888888999999999999999 5788999999999999999999988999999999999999999755 899999999
Q ss_pred cEEEEECCCC--eeEEEEecCCCeEEEEEecCCCEEEEEEc---CCeEEEEECCCC-eEEEEEeCCC
Q 004885 664 EIRYWSINNG--SCAGVFKCQSGATQMRFQPRLGRILAAAI---ENYISILDVETQ-VCRLKLQVSH 724 (725)
Q Consensus 664 ~I~IwDl~t~--~~v~~~~~~~~V~sv~fspdg~~Lla~s~---Dg~V~IwDl~tg-~~v~~l~GH~ 724 (725)
.|+|||+.+. ..+.++....+|.+|+|-|+..+.++.++ |-.|+|||++-. -+.++|..|.
T Consensus 243 ~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~ 309 (839)
T KOG0269|consen 243 MVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHT 309 (839)
T ss_pred cEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccC
Confidence 9999999864 34556666789999999999887555443 789999999754 6677777775
No 78
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=5.9e-20 Score=180.88 Aligned_cols=174 Identities=19% Similarity=0.364 Sum_probs=157.5
Q ss_pred eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004885 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (725)
Q Consensus 546 ~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWD 625 (725)
+..+++..|.++|..+.|+-||++.++|+.|++|++|+...+.+++++.+|...|.+++.+.|...|++|+.|+.|.+||
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCC--eeEEEEec-CCCeEEEEEecCCCEEEEEEc
Q 004885 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFKC-QSGATQMRFQPRLGRILAAAI 702 (725)
Q Consensus 626 l~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~--~~v~~~~~-~~~V~sv~fspdg~~Lla~s~ 702 (725)
+.+++ .++.|.+|.+.|+.|.|+.+.. ++++|+.|.+|++||.+.. +++..+.. ...|.+|.... ..|++|+.
T Consensus 88 V~TGk-v~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~--heIvaGS~ 163 (307)
T KOG0316|consen 88 VNTGK-VDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE--HEIVAGSV 163 (307)
T ss_pred cccCe-eeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--cEEEeecc
Confidence 99998 7999999999999999998866 8889999999999999864 56666654 67899998874 47889999
Q ss_pred CCeEEEEECCCCeEEEEEeCC
Q 004885 703 ENYISILDVETQVCRLKLQVS 723 (725)
Q Consensus 703 Dg~V~IwDl~tg~~v~~l~GH 723 (725)
||+++.||++.|...-.+-||
T Consensus 164 DGtvRtydiR~G~l~sDy~g~ 184 (307)
T KOG0316|consen 164 DGTVRTYDIRKGTLSSDYFGH 184 (307)
T ss_pred CCcEEEEEeecceeehhhcCC
Confidence 999999999999877666655
No 79
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=1.3e-19 Score=183.19 Aligned_cols=205 Identities=18% Similarity=0.296 Sum_probs=165.5
Q ss_pred CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 004885 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWC 583 (725)
Q Consensus 505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWd 583 (725)
..+++.+|+.|+.|.+|+.....+-+....-+ +..+.-....-.+|.-.|.++.|-| |.-++.+++.|++++|||
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~----k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWD 130 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIA----KHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWD 130 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhcccee----heeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEee
Confidence 35799999999999999765543222111100 0111111222347889999999999 666899999999999999
Q ss_pred CCCCeEEEEeccCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEe
Q 004885 584 TESFTVKSTLEEHTQWITDVRFSP---SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (725)
Q Consensus 584 l~~~~~i~~l~~H~~~V~~IafsP---d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs 660 (725)
+.+......|+ -.+.|+.-+++| ...++++|..|-.|++.|+..+. +.+++.||...|.+|.|+|..+++|++|+
T Consensus 131 tnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs-~sH~LsGHr~~vlaV~Wsp~~e~vLatgs 208 (397)
T KOG4283|consen 131 TNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS-FSHTLSGHRDGVLAVEWSPSSEWVLATGS 208 (397)
T ss_pred cccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc-ceeeeccccCceEEEEeccCceeEEEecC
Confidence 99988887776 467899999999 35678888889999999999998 79999999999999999999999999999
Q ss_pred CCCcEEEEECCCC-eeEEEEe---------------cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 004885 661 NNSEIRYWSINNG-SCAGVFK---------------CQSGATQMRFQPRLGRILAAAIENYISILDVETQV 715 (725)
Q Consensus 661 ~Dg~I~IwDl~t~-~~v~~~~---------------~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~ 715 (725)
.||.|++||++.. .|..++. +.+.|..++|..++.++++++.|..+++|+.++|+
T Consensus 209 aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 209 ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred CCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 9999999999864 4554443 23568999999999999999999999999998874
No 80
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=9e-20 Score=193.89 Aligned_cols=226 Identities=19% Similarity=0.283 Sum_probs=183.8
Q ss_pred CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccC-CCceeeeEEEecCCC
Q 004885 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG-KGFTFTEFQLIPAST 555 (725)
Q Consensus 477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~H~ 555 (725)
.+-.++.++++++++. ++.+++.|++|--|....+.+.+....+..-.. .+..+++-. +.|.
T Consensus 140 ~H~~s~~~vals~d~~---------------~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r--~~h~ 202 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDK---------------RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR--KGHV 202 (479)
T ss_pred cccCcceEEEeecccc---------------ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc--cccc
Confidence 3445667777777766 889999999999997766654433332210010 122222222 4899
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEE
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~ 635 (725)
..|.|++.|+||++||+|+.|..|.|||.++.+.+.++.+|.+.|.+++|-.....|++++.|++|++|+++... .+.+
T Consensus 203 keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s-~vet 281 (479)
T KOG0299|consen 203 KEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS-YVET 281 (479)
T ss_pred ceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH-HHHH
Confidence 999999999999999999999999999999999999999999999999999888899999999999999999887 6889
Q ss_pred EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 004885 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV 715 (725)
Q Consensus 636 ~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~ 715 (725)
+.+|.+.|.+|+.....+ ++.+|+.|+++++|++.....+....+.+.+-|++|-.+ .++++|+.+|.|.+|++-+.+
T Consensus 282 lyGHqd~v~~IdaL~reR-~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKk 359 (479)
T KOG0299|consen 282 LYGHQDGVLGIDALSRER-CVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKK 359 (479)
T ss_pred HhCCccceeeechhcccc-eEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccC
Confidence 999999999999887766 677777999999999965444433334668999999877 789999999999999999999
Q ss_pred EEEEEeC
Q 004885 716 CRLKLQV 722 (725)
Q Consensus 716 ~v~~l~G 722 (725)
++++.+-
T Consensus 360 plf~~~~ 366 (479)
T KOG0299|consen 360 PLFTSRL 366 (479)
T ss_pred ceeEeec
Confidence 9988763
No 81
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=3.2e-19 Score=191.02 Aligned_cols=184 Identities=22% Similarity=0.266 Sum_probs=158.3
Q ss_pred cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 004885 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 585 (725)
Q Consensus 507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~ 585 (725)
..+++|+.|+.+++|+.... .....+.+|++.|.|.+|+| .+.+++|||+||+|++||++
T Consensus 124 t~l~s~sDd~v~k~~d~s~a-------------------~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR 184 (487)
T KOG0310|consen 124 TMLVSGSDDKVVKYWDLSTA-------------------YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTR 184 (487)
T ss_pred eEEEecCCCceEEEEEcCCc-------------------EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEec
Confidence 47788989999999944222 23567889999999999999 56689999999999999998
Q ss_pred CC-eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc
Q 004885 586 SF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (725)
Q Consensus 586 ~~-~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~ 664 (725)
.. ..+..+ .|..+|..|.|-|.+..|++++ ...|+|||+.++...+..+..|...|+|+++..++. -|++++-|+.
T Consensus 185 ~~~~~v~el-nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~-rLlS~sLD~~ 261 (487)
T KOG0310|consen 185 SLTSRVVEL-NHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDST-RLLSGSLDRH 261 (487)
T ss_pred cCCceeEEe-cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCc-eEeecccccc
Confidence 86 555555 4899999999999999999987 457999999987756666666999999999999887 4559999999
Q ss_pred EEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885 665 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE 712 (725)
Q Consensus 665 I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~ 712 (725)
|++||+.+.+.+..++..++|.+|+.+|++..+++|.++|.+.+-+..
T Consensus 262 VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 262 VKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred eEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeeehhh
Confidence 999999999999999999999999999999999999999998887543
No 82
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.8e-18 Score=169.19 Aligned_cols=228 Identities=17% Similarity=0.229 Sum_probs=179.2
Q ss_pred cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST 555 (725)
Q Consensus 476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~ 555 (725)
.+.+..+..+.|+|.|. +.++|+..++.++...++-.+.+.... ..+.......+.-+.|.
T Consensus 29 l~dsqairav~fhp~g~---------------lyavgsnskt~ric~yp~l~~~r~~he----a~~~pp~v~~kr~khhk 89 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGG---------------LYAVGSNSKTFRICAYPALIDLRHAHE----AAKQPPSVLCKRNKHHK 89 (350)
T ss_pred ecchhheeeEEecCCCc---------------eEEeccCCceEEEEccccccCcccccc----cccCCCeEEeeeccccC
Confidence 34556778888888886 889999999999986555443322111 11112223345567899
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-----EEEeccCCCCeEEEEEcCC----CCEEEEEe-CCCeEEEEE
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-----KSTLEEHTQWITDVRFSPS----LSRLATSS-ADRTVRVWD 625 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~-----i~~l~~H~~~V~~IafsPd----~~~Lasgs-~DgtIrvWD 625 (725)
+.|+|.+|+|+|.+|++|+.|++|++..++...+ ...|.-|.+.|.+++|-.+ +.+|++++ .|..|.+-|
T Consensus 90 gsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~td 169 (350)
T KOG0641|consen 90 GSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITD 169 (350)
T ss_pred ccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEee
Confidence 9999999999999999999999999987654332 2356779999999999542 45677665 478888889
Q ss_pred CCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--------CCCeEEEEEecCCCEE
Q 004885 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--------QSGATQMRFQPRLGRI 697 (725)
Q Consensus 626 l~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--------~~~V~sv~fspdg~~L 697 (725)
...+. .+..+.+|.+.|.++. +-+ ..+|++|+.|.+|++||++-..|+.++.. ...|.++++.|.|+.|
T Consensus 170 c~~g~-~~~a~sghtghilaly-swn-~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll 246 (350)
T KOG0641|consen 170 CGRGQ-GFHALSGHTGHILALY-SWN-GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLL 246 (350)
T ss_pred cCCCC-cceeecCCcccEEEEE-Eec-CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCccee
Confidence 99888 7899999999998773 222 45899999999999999999999988763 2469999999999999
Q ss_pred EEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885 698 LAAAIENYISILDVETQVCRLKLQVSHS 725 (725)
Q Consensus 698 la~s~Dg~V~IwDl~tg~~v~~l~GH~s 725 (725)
+++-.|....+||++.++.+.+|..|+.
T Consensus 247 ~sg~~dssc~lydirg~r~iq~f~phsa 274 (350)
T KOG0641|consen 247 ASGHADSSCMLYDIRGGRMIQRFHPHSA 274 (350)
T ss_pred eeccCCCceEEEEeeCCceeeeeCCCcc
Confidence 9999999999999999999999998863
No 83
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.83 E-value=1e-19 Score=195.17 Aligned_cols=215 Identities=20% Similarity=0.246 Sum_probs=162.2
Q ss_pred CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (725)
Q Consensus 478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (725)
++..++++.+.|.|. -+++|+.|-+|+.|+...-.. . ...++.+.- .-+..
T Consensus 166 gtk~Vsal~~Dp~Ga---------------R~~sGs~Dy~v~~wDf~gMda-s-----------~~~fr~l~P--~E~h~ 216 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGA---------------RFVSGSLDYTVKFWDFQGMDA-S-----------MRSFRQLQP--CETHQ 216 (641)
T ss_pred CceEEEEeeecCCCc---------------eeeeccccceEEEEecccccc-c-----------chhhhccCc--ccccc
Confidence 555667777777776 779999999999995533210 0 111222222 22345
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE------------eccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEE
Q 004885 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST------------LEEHTQWITDVRFSPS-LSRLATSSADRTVRVW 624 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~------------l~~H~~~V~~IafsPd-~~~Lasgs~DgtIrvW 624 (725)
|.++.|++.|..|++.+....++|+|-+....+.. -++|...++|.+|+|. ...|+||+.||++|||
T Consensus 217 i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiW 296 (641)
T KOG0772|consen 217 INSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIW 296 (641)
T ss_pred cceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEE
Confidence 99999999999888888888999999776554433 2589999999999995 6679999999999999
Q ss_pred ECCCCCeeeEEEe-----cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEE--e--c--CCCeEEEEEecC
Q 004885 625 DTENPDYSLRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--K--C--QSGATQMRFQPR 693 (725)
Q Consensus 625 Dl~~~~~~l~~~~-----~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~--~--~--~~~V~sv~fspd 693 (725)
|+.+.+.-+..|+ +..-.++.++|+|+|. +||+|+.||.|.+||.........+ + | ...|+||.|++|
T Consensus 297 dv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~d 375 (641)
T KOG0772|consen 297 DVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYD 375 (641)
T ss_pred ecCCchhheeEEeeccCCCcccCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccc
Confidence 9998775455554 2345689999999998 5888899999999998653322222 2 2 347999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCC-eEEEEEeC
Q 004885 694 LGRILAAAIENYISILDVETQ-VCRLKLQV 722 (725)
Q Consensus 694 g~~Lla~s~Dg~V~IwDl~tg-~~v~~l~G 722 (725)
|++|++-+.|++++|||++.. ++++...|
T Consensus 376 g~~LlSRg~D~tLKvWDLrq~kkpL~~~tg 405 (641)
T KOG0772|consen 376 GNYLLSRGFDDTLKVWDLRQFKKPLNVRTG 405 (641)
T ss_pred cchhhhccCCCceeeeeccccccchhhhcC
Confidence 999999999999999999875 66665544
No 84
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.83 E-value=3.2e-19 Score=178.14 Aligned_cols=210 Identities=17% Similarity=0.312 Sum_probs=175.7
Q ss_pred CCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCe
Q 004885 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV 558 (725)
Q Consensus 479 s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V 558 (725)
...+..++|+.+|. .+++|+.|+++++|..... .+......++|++.|
T Consensus 20 ~~~v~Sv~wn~~g~---------------~lasgs~dktv~v~n~e~~-----------------r~~~~~~~~gh~~sv 67 (313)
T KOG1407|consen 20 VQKVHSVAWNCDGT---------------KLASGSFDKTVSVWNLERD-----------------RFRKELVYRGHTDSV 67 (313)
T ss_pred hhcceEEEEcccCc---------------eeeecccCCceEEEEecch-----------------hhhhhhcccCCCcch
Confidence 34567889999887 8999999999999954332 222233457999999
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-------
Q 004885 559 ESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD------- 630 (725)
Q Consensus 559 ~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~------- 630 (725)
..++|+| ...+|++++.|++|++||++.++++..... ...-..+.|+|++.+++.++.|..|...|.++..
T Consensus 68 dql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~-~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~ 146 (313)
T KOG1407|consen 68 DQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIET-KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF 146 (313)
T ss_pred hhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeec-cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc
Confidence 9999988 456899999999999999999999887764 3444567899999999999999988888876422
Q ss_pred ---------------------------------eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEE
Q 004885 631 ---------------------------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677 (725)
Q Consensus 631 ---------------------------------~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~ 677 (725)
.++..+..|.....||.|+|+|+ .|++|+.|..+.+||+..--|++
T Consensus 147 ~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gr-yfA~GsADAlvSLWD~~ELiC~R 225 (313)
T KOG1407|consen 147 KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGR-YFATGSADALVSLWDVDELICER 225 (313)
T ss_pred cceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCc-eEeeccccceeeccChhHhhhhe
Confidence 12445667999999999999999 67899999999999999999999
Q ss_pred EEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885 678 VFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQV 722 (725)
Q Consensus 678 ~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~G 722 (725)
.+.. .-+|..+.|+.+|++|++++.|..|-|=+++||..+..++.
T Consensus 226 ~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~ 271 (313)
T KOG1407|consen 226 CISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC 271 (313)
T ss_pred eeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec
Confidence 8876 77899999999999999999999999999999988887764
No 85
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.83 E-value=8.9e-20 Score=191.59 Aligned_cols=195 Identities=21% Similarity=0.264 Sum_probs=164.9
Q ss_pred CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (725)
Q Consensus 505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl 584 (725)
..+.+.+.+.|+++++|. ....+...++.+|++.|+++.|......+++|+.|.+|++||+
T Consensus 230 ~~~~~iAas~d~~~r~Wn-------------------vd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl 290 (459)
T KOG0288|consen 230 DNKHVIAASNDKNLRLWN-------------------VDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDL 290 (459)
T ss_pred CCceEEeecCCCceeeee-------------------ccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhh
Confidence 334778888999999993 3344677889999999999999887777999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc
Q 004885 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (725)
Q Consensus 585 ~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~ 664 (725)
....|.+++.. ...+.+|+.. ...+++|-+|++||+||++... ++.....+. .|++|..++++..++ +++.|.+
T Consensus 291 ~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~-~~~sv~~gg-~vtSl~ls~~g~~lL-sssRDdt 364 (459)
T KOG0288|consen 291 QKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSAD-KTRSVPLGG-RVTSLDLSMDGLELL-SSSRDDT 364 (459)
T ss_pred hhhheeccccc-cccccceEec--ceeeeecccccceEEEeccCCc-eeeEeecCc-ceeeEeeccCCeEEe-eecCCCc
Confidence 99888776643 4456666665 4568889999999999999988 677776665 899999999998776 6688999
Q ss_pred EEEEECCCCeeEEEEec-----CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885 665 IRYWSINNGSCAGVFKC-----QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH 724 (725)
Q Consensus 665 I~IwDl~t~~~v~~~~~-----~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~ 724 (725)
+.++|+++......|.. ...++.++|+|++.|+++|+.||.|+||++.++++...+...+
T Consensus 365 l~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~ 429 (459)
T KOG0288|consen 365 LKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLST 429 (459)
T ss_pred eeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCC
Confidence 99999999988887764 4568999999999999999999999999999999999887543
No 86
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.83 E-value=1.8e-19 Score=191.77 Aligned_cols=198 Identities=17% Similarity=0.309 Sum_probs=161.5
Q ss_pred cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECC
Q 004885 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTE 585 (725)
Q Consensus 507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~ 585 (725)
.++++++..+.|.||+...........+ ...+-..+++|...-+.++|++... .|++|+.|++|++||+.
T Consensus 138 ~iVAt~t~~~dv~Vfd~tk~~s~~~~~~---------~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~ 208 (422)
T KOG0264|consen 138 NIVATKTSSGDVYVFDYTKHPSKPKASG---------ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDIN 208 (422)
T ss_pred cEEEecCCCCCEEEEEeccCCCcccccc---------cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEecc
Confidence 5788999999999996554432221111 3345567889999889999999544 79999999999999996
Q ss_pred CC-------eEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CCeeeEEEecCCCCeEEEEEccCCCeEE
Q 004885 586 SF-------TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN-PDYSLRTFTGHSTTVMSLDFHPSKEDLL 656 (725)
Q Consensus 586 ~~-------~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~-~~~~l~~~~~h~~~V~sl~fsP~g~~ll 656 (725)
.. .....+.+|...|.+++|++ +...|++++.|+.+.|||+++ ...+.....+|.+.|+|++|+|.+.++|
T Consensus 209 ~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~il 288 (422)
T KOG0264|consen 209 AESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFIL 288 (422)
T ss_pred ccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceE
Confidence 42 23567899999999999999 567889999999999999995 3336778889999999999999999999
Q ss_pred EEEeCCCcEEEEECCC-CeeEEEEec-CCCeEEEEEecCCCEEEE-EEcCCeEEEEECCC
Q 004885 657 CSCDNNSEIRYWSINN-GSCAGVFKC-QSGATQMRFQPRLGRILA-AAIENYISILDVET 713 (725)
Q Consensus 657 aSgs~Dg~I~IwDl~t-~~~v~~~~~-~~~V~sv~fspdg~~Lla-~s~Dg~V~IwDl~t 713 (725)
|+|+.|++|++||+|+ ..++.++.. ...|.+|.|+|....+++ ++.|+.+.|||+..
T Consensus 289 AT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 289 ATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred EeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 9999999999999997 456777775 677999999998776554 56699999999864
No 87
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=3.3e-19 Score=181.49 Aligned_cols=211 Identities=22% Similarity=0.365 Sum_probs=170.9
Q ss_pred cCCCCcEEEEeeCCCcEEEec------CCCCCCCCC-----ccccc------c---ccCCCcee-eeEEEecCCCCCeEE
Q 004885 502 LTDMDRFVDDGSLDDNVESFL------SPDDADPRD-----RVGRS------A---EVGKGFTF-TEFQLIPASTSKVES 560 (725)
Q Consensus 502 ~~~~~~~lasGs~D~~V~vw~------s~~~~~~~~-----~~~~~------~---~~~~~~~~-~~~~~l~~H~~~V~~ 560 (725)
+.....++.+++-|++..+|. .+....+.+ ...+. . +..++.++ .++..+.+|.+.|.|
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 334445899999999999995 222111111 11110 0 11122233 356788999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCC
Q 004885 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS 640 (725)
Q Consensus 561 i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~ 640 (725)
+.|-..|+.+++++.|.+..+||+++++.+..+.+|....+.++-+|.-+++++++.|.+.++||++..-..+..|.||.
T Consensus 278 ~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHt 357 (481)
T KOG0300|consen 278 CDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHT 357 (481)
T ss_pred hhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999997666789999999
Q ss_pred CCeEEEEEccCCCeEEEEEeCCCcEEEEECCC-CeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ 714 (725)
Q Consensus 641 ~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t-~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg 714 (725)
..|+++.|..+.+ ++++++|.+|+|||+++ ..++.++....+++.++++..+..|+.--....|++||+...
T Consensus 358 dtVTS~vF~~dd~--vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 358 DTVTSVVFNTDDR--VVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred cceeEEEEecCCc--eeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCC
Confidence 9999999998865 67999999999999987 467888888899999999987555555555678999999743
No 88
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.82 E-value=3.6e-20 Score=183.64 Aligned_cols=217 Identities=18% Similarity=0.210 Sum_probs=188.7
Q ss_pred ccccccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEE
Q 004885 471 RPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL 550 (725)
Q Consensus 471 ~~~l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (725)
.|..-+.+++++..+.|++- .+..-||.+++.|++-.+- .+.+..-+.+
T Consensus 6 ~pl~c~ghtrpvvdl~~s~i------------tp~g~flisa~kd~~pmlr-------------------~g~tgdwigt 54 (334)
T KOG0278|consen 6 TPLTCHGHTRPVVDLAFSPI------------TPDGYFLISASKDGKPMLR-------------------NGDTGDWIGT 54 (334)
T ss_pred CceEEcCCCcceeEEeccCC------------CCCceEEEEeccCCCchhc-------------------cCCCCCcEEe
Confidence 34556778889999999983 3455689999998775443 3444566789
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004885 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (725)
Q Consensus 551 l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~ 630 (725)
+.+|.+.|...+.+.+..+.|+++.|-+.+|||.-++..+..|. |..-|..++|+.|..+|+||+.++.+||||++.++
T Consensus 55 feghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~ 133 (334)
T KOG0278|consen 55 FEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK 133 (334)
T ss_pred eeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCC
Confidence 99999999999999888889999999999999999999888885 88999999999999999999999999999999999
Q ss_pred eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004885 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD 710 (725)
Q Consensus 631 ~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwD 710 (725)
.+...+.+|.+.|..+-|+.....+| +...|++||+||.+++..+.++....+|+++.++++|.+ ++.+..+.|.+||
T Consensus 134 App~E~~ghtg~Ir~v~wc~eD~~iL-SSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~i-lTia~gssV~Fwd 211 (334)
T KOG0278|consen 134 APPKEISGHTGGIRTVLWCHEDKCIL-SSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRI-LTIAYGSSVKFWD 211 (334)
T ss_pred CCchhhcCCCCcceeEEEeccCceEE-eeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCE-EEEecCceeEEec
Confidence 88999999999999999998877555 668899999999999999999999999999999999655 5666778899999
Q ss_pred CCCCeEEEEEe
Q 004885 711 VETQVCRLKLQ 721 (725)
Q Consensus 711 l~tg~~v~~l~ 721 (725)
..+...++.++
T Consensus 212 aksf~~lKs~k 222 (334)
T KOG0278|consen 212 AKSFGLLKSYK 222 (334)
T ss_pred cccccceeecc
Confidence 99988887765
No 89
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.82 E-value=4.7e-19 Score=197.10 Aligned_cols=177 Identities=26% Similarity=0.360 Sum_probs=156.5
Q ss_pred eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-----CeEE--------EEeccCCCCeEEEEEcCCCCEE
Q 004885 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-----FTVK--------STLEEHTQWITDVRFSPSLSRL 612 (725)
Q Consensus 546 ~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~-----~~~i--------~~l~~H~~~V~~IafsPd~~~L 612 (725)
..+.++++|.+.|..++.+||++.+++||.|++|++||..- +... +++ .-...|.|+.++||+++|
T Consensus 445 ~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~L 523 (888)
T KOG0306|consen 445 SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLL 523 (888)
T ss_pred hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcCCCcEE
Confidence 45567789999999999999999999999999999999731 1111 122 235779999999999999
Q ss_pred EEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEe
Q 004885 613 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQ 691 (725)
Q Consensus 613 asgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fs 691 (725)
+++--|.+|+||-+++-+ ....+-||.-+|.|++.+|++. +++||+.|..|+||-++-|.|...+-. ...|.++.|.
T Consensus 524 aVsLLdnTVkVyflDtlK-FflsLYGHkLPV~smDIS~DSk-livTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~ 601 (888)
T KOG0306|consen 524 AVSLLDNTVKVYFLDTLK-FFLSLYGHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFL 601 (888)
T ss_pred EEEeccCeEEEEEeccee-eeeeecccccceeEEeccCCcC-eEEeccCCCceEEeccccchhhhhhhcccCceeEEEEc
Confidence 999999999999999988 5677789999999999999988 888999999999999999999988765 6789999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885 692 PRLGRILAAAIENYISILDVETQVCRLKLQVSHS 725 (725)
Q Consensus 692 pdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s 725 (725)
|....+++++.|+.|+-||-+..+++..|.||++
T Consensus 602 P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ 635 (888)
T KOG0306|consen 602 PKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHS 635 (888)
T ss_pred ccceeEEEecCcceEEeechhhhhhheeeccchh
Confidence 9988899999999999999999999999999974
No 90
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.81 E-value=3.3e-19 Score=176.82 Aligned_cols=205 Identities=17% Similarity=0.248 Sum_probs=171.4
Q ss_pred ccccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEec
Q 004885 473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP 552 (725)
Q Consensus 473 ~l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 552 (725)
...+.+.+.+..+.|+.|.. +|.+|+.++-+|+|+..... .+...+.
T Consensus 94 lhsf~hkhivk~~af~~ds~---------------~lltgg~ekllrvfdln~p~------------------App~E~~ 140 (334)
T KOG0278|consen 94 LHSFEHKHIVKAVAFSQDSN---------------YLLTGGQEKLLRVFDLNRPK------------------APPKEIS 140 (334)
T ss_pred hhhhhhhheeeeEEecccch---------------hhhccchHHHhhhhhccCCC------------------CCchhhc
Confidence 34455667778888888776 88999999999999554332 2334567
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004885 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (725)
Q Consensus 553 ~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~ 632 (725)
+|++.|..+.|+...+.|+++.+|++||+||.++++.+..+. ....|+++.+++++++|.+ ...+.|++||..+.. .
T Consensus 141 ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~-~ 217 (334)
T KOG0278|consen 141 GHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFG-L 217 (334)
T ss_pred CCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEE-ecCceeEEecccccc-c
Confidence 999999999999999999999999999999999999998886 4678999999999886654 567889999999877 5
Q ss_pred eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEE-ec-CCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004885 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KC-QSGATQMRFQPRLGRILAAAIENYISILD 710 (725)
Q Consensus 633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~-~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwD 710 (725)
+..+.- ...|.+..++|+.. ++++|+.|..++.||..++..+..+ +. .++|.||+|+|+|..+++|+.||+|++|-
T Consensus 218 lKs~k~-P~nV~SASL~P~k~-~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 218 LKSYKM-PCNVESASLHPKKE-FFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred eeeccC-ccccccccccCCCc-eEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 555553 34589999999985 8889999999999999999999886 43 78999999999999999999999999998
Q ss_pred CCCCe
Q 004885 711 VETQV 715 (725)
Q Consensus 711 l~tg~ 715 (725)
...++
T Consensus 296 t~~~~ 300 (334)
T KOG0278|consen 296 TTPGK 300 (334)
T ss_pred ecCCC
Confidence 76553
No 91
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=2e-18 Score=176.36 Aligned_cols=196 Identities=15% Similarity=0.282 Sum_probs=164.7
Q ss_pred CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEE
Q 004885 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK--LLATGGHDKKAVLWC 583 (725)
Q Consensus 506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~--~LaSgs~Dg~V~IWd 583 (725)
.+|+++||.|.+|++|+. ........+-.|.+.|+|+.|.++-. .|++|+.||.|.+|+
T Consensus 53 ~~~~aSGssDetI~IYDm-------------------~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 53 GPYVASGSSDETIHIYDM-------------------RKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred ceeEeccCCCCcEEEEec-------------------cchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 469999999999999943 23355667778999999999998665 899999999999999
Q ss_pred CCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC
Q 004885 584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (725)
Q Consensus 584 l~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg 663 (725)
+..+.++..+++|.+.|+.|++||.+++.++.+.|+.+++||+-++......-.. ...+.|.|+|.|.++++.+. .
T Consensus 114 ~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~--~~at~v~w~~~Gd~F~v~~~--~ 189 (362)
T KOG0294|consen 114 VGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK--NKATLVSWSPQGDHFVVSGR--N 189 (362)
T ss_pred cCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC--CcceeeEEcCCCCEEEEEec--c
Confidence 9999999999999999999999999999999999999999999887732222222 33455999999996665543 4
Q ss_pred cEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885 664 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS 725 (725)
Q Consensus 664 ~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s 725 (725)
.|-||.+.+.+....+.....+.++.|.. +.+|++|+.|+.|++||..+..+.+.|.+|.+
T Consensus 190 ~i~i~q~d~A~v~~~i~~~~r~l~~~~l~-~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~ 250 (362)
T KOG0294|consen 190 KIDIYQLDNASVFREIENPKRILCATFLD-GSELLVGGDNEWISLKDTDSDTPLTEFLAHEN 250 (362)
T ss_pred EEEEEecccHhHhhhhhccccceeeeecC-CceEEEecCCceEEEeccCCCccceeeecchh
Confidence 69999999888777776666788888765 47899999999999999999999999999964
No 92
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.80 E-value=2.1e-19 Score=182.69 Aligned_cols=173 Identities=27% Similarity=0.419 Sum_probs=149.3
Q ss_pred eEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC------------------CeEEEEeccCCCCeEEEEEcCC
Q 004885 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------------------FTVKSTLEEHTQWITDVRFSPS 608 (725)
Q Consensus 547 ~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~------------------~~~i~~l~~H~~~V~~IafsPd 608 (725)
+...+..|..++.+.+|++||.++|+|+.|..|+|+|++. .-.+++|..|...|+++.|||.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 4456778999999999999999999999999999999861 1357889999999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeEEEe--cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe----cC
Q 004885 609 LSRLATSSADRTVRVWDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQ 682 (725)
Q Consensus 609 ~~~Lasgs~DgtIrvWDl~~~~~~l~~~~--~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~----~~ 682 (725)
...|++++.|++|++||+.... ..+.++ .....|.++.|+|.|+ +++.|....++++||+++..|..... +.
T Consensus 184 e~ILiS~srD~tvKlFDfsK~s-aKrA~K~~qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTS-AKRAFKVFQDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred hheEEeccCCCeEEEEecccHH-HHHHHHHhhccceeeeEeecCCCc-eEEEecCCCceeEEeccceeEeeecCcccccc
Confidence 9999999999999999998765 222222 2346799999999999 55577778899999999998876654 36
Q ss_pred CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 683 SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 683 ~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
+.|++|.+++.+...++++.||.|+|||--+++||.+|.
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~ 300 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG 300 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH
Confidence 779999999999999999999999999999999999886
No 93
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.80 E-value=1e-18 Score=193.37 Aligned_cols=182 Identities=24% Similarity=0.370 Sum_probs=154.7
Q ss_pred EEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 004885 509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 588 (725)
Q Consensus 509 lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~ 588 (725)
+.+|+.|..|.+| +.....++.++++|...|.|++...++. +++||.|.+++||-. ++
T Consensus 74 l~~g~~D~~i~v~-------------------~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~ 131 (745)
T KOG0301|consen 74 LVVGGMDTTIIVF-------------------KLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GE 131 (745)
T ss_pred eEeecccceEEEE-------------------ecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hh
Confidence 5667788888777 3334467788999999999999877776 999999999999975 45
Q ss_pred EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEE
Q 004885 589 VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668 (725)
Q Consensus 589 ~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~Iw 668 (725)
+...+.+|...|+++++-|+. .++||+.|++|++|.-. . ++.+|.+|...|..+++-+++. |++|+.||.|++|
T Consensus 132 l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~--~-~l~tf~gHtD~VRgL~vl~~~~--flScsNDg~Ir~w 205 (745)
T KOG0301|consen 132 LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG--T-LLKTFSGHTDCVRGLAVLDDSH--FLSCSNDGSIRLW 205 (745)
T ss_pred hhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCC--c-hhhhhccchhheeeeEEecCCC--eEeecCCceEEEE
Confidence 666799999999999999987 88999999999999873 3 7899999999999999999976 5699999999999
Q ss_pred ECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 669 SINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 669 Dl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
++ +|.++.++.+ ...|+++....+++.+++++.|++++||+.. +|+..+.
T Consensus 206 ~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~ 256 (745)
T KOG0301|consen 206 DL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT 256 (745)
T ss_pred ec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe
Confidence 99 5777766654 6779999977788999999999999999987 6665553
No 94
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=8e-18 Score=191.27 Aligned_cols=221 Identities=20% Similarity=0.275 Sum_probs=172.8
Q ss_pred cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCC-CCCCCcccc-------------ccccCC
Q 004885 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDD-ADPRDRVGR-------------SAEVGK 541 (725)
Q Consensus 476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~-~~~~~~~~~-------------~~~~~~ 541 (725)
+.+..-.+.++|.++|. |+.+++.|+.|++|....+ ++++..... ......
T Consensus 10 yaht~G~t~i~~d~~ge---------------fi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~ 74 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGE---------------FICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSE 74 (933)
T ss_pred hhccCceEEEEEcCCCC---------------EEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeec
Confidence 44555578888888886 9999999999999966655 333332210 000000
Q ss_pred Cce--------eeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEE
Q 004885 542 GFT--------FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 613 (725)
Q Consensus 542 ~~~--------~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~La 613 (725)
..+ ..+-..+...+-++++++|+-+|+++|.||.|-.|++.++.+.....++++|.++|.+|.|+|++.+||
T Consensus 75 ~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLA 154 (933)
T KOG1274|consen 75 QNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLA 154 (933)
T ss_pred cceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEE
Confidence 000 011112333457799999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCeEEEEECCCCCeeeEEEec--------CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---C
Q 004885 614 TSSADRTVRVWDTENPDYSLRTFTG--------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---Q 682 (725)
Q Consensus 614 sgs~DgtIrvWDl~~~~~~l~~~~~--------h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~---~ 682 (725)
+.+.||.|+|||+.++. +..++.+ ....+..++|+|++..+++.+. |++|++|+..++.....+.. .
T Consensus 155 vss~dG~v~iw~~~~~~-~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~-d~~Vkvy~r~~we~~f~Lr~~~~s 232 (933)
T KOG1274|consen 155 VSSCDGKVQIWDLQDGI-LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV-DNTVKVYSRKGWELQFKLRDKLSS 232 (933)
T ss_pred EEecCceEEEEEcccch-hhhhcccCCccccccccceeeeeeecCCCCeEEeecc-CCeEEEEccCCceeheeecccccc
Confidence 99999999999999876 3433332 1355788999999886765554 89999999999988888764 4
Q ss_pred CCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004885 683 SGATQMRFQPRLGRILAAAIENYISILDVET 713 (725)
Q Consensus 683 ~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~t 713 (725)
..+..+.|+|+|.||++++.||.|.|||+++
T Consensus 233 s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 233 SKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 4589999999999999999999999999994
No 95
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=2.3e-18 Score=189.33 Aligned_cols=222 Identities=17% Similarity=0.309 Sum_probs=184.8
Q ss_pred cccCCCCCeeEEEEecCCCccccc--------------cCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCcccccccc
Q 004885 474 LQHNGASSKSLLMFGSDGMGSLTS--------------APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEV 539 (725)
Q Consensus 474 l~~s~s~~~s~l~fs~dg~~~la~--------------~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~ 539 (725)
..+.++++..+..|+.......++ ....+..+.+.+.++|.|.+|++|....+.
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~------------ 106 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN------------ 106 (735)
T ss_pred eEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc------------
Confidence 467788889999998765432211 112234566688999999999999554441
Q ss_pred CCCceeeeEEEecCCCCCeEEEEE-cCCCCEEEEEeCCCcEEEEECCCCeE--EE--------Eec-cCCCCeEEEEEcC
Q 004885 540 GKGFTFTEFQLIPASTSKVESCHF-SPDGKLLATGGHDKKAVLWCTESFTV--KS--------TLE-EHTQWITDVRFSP 607 (725)
Q Consensus 540 ~~~~~~~~~~~l~~H~~~V~~i~f-Spdg~~LaSgs~Dg~V~IWdl~~~~~--i~--------~l~-~H~~~V~~IafsP 607 (725)
.-.+.++..|.+.|.|+++ -++..++|+||-|+.|+|||++++.. +. .+. ++...|++++..+
T Consensus 107 -----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~ 181 (735)
T KOG0308|consen 107 -----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ 181 (735)
T ss_pred -----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC
Confidence 1345678899999999999 77888999999999999999987622 21 223 7889999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeE
Q 004885 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGAT 686 (725)
Q Consensus 608 d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~ 686 (725)
.+..|++|+..+.|++||.++.+ .+..+.||...|.++..+++|..++ +++.||+|++||+...+|+.++.. ...|.
T Consensus 182 t~t~ivsGgtek~lr~wDprt~~-kimkLrGHTdNVr~ll~~dDGt~~l-s~sSDgtIrlWdLgqQrCl~T~~vH~e~VW 259 (735)
T KOG0308|consen 182 TGTIIVSGGTEKDLRLWDPRTCK-KIMKLRGHTDNVRVLLVNDDGTRLL-SASSDGTIRLWDLGQQRCLATYIVHKEGVW 259 (735)
T ss_pred cceEEEecCcccceEEecccccc-ceeeeeccccceEEEEEcCCCCeEe-ecCCCceEEeeeccccceeeeEEeccCceE
Confidence 99999999999999999999988 6778889999999999999998555 888999999999999999999875 66799
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885 687 QMRFQPRLGRILAAAIENYISILDVETQ 714 (725)
Q Consensus 687 sv~fspdg~~Lla~s~Dg~V~IwDl~tg 714 (725)
++..+|+-.++++|+.|+.|..-|+++.
T Consensus 260 aL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 260 ALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEeeCCCcceEEecCCCCcEEecccCCc
Confidence 9999999999999999999999999984
No 96
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.79 E-value=7.9e-18 Score=168.65 Aligned_cols=173 Identities=21% Similarity=0.247 Sum_probs=150.5
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004885 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (725)
Q Consensus 550 ~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~ 629 (725)
.+.+|..+++-|.|+.+|.+|++|+.|.++.||-..+++.+.++.+|++.|+||+.+-+.++++||+.|.++++||+.++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 46789999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred CeeeEEEecCCCCeEEEEEccCCCeEEEEEe----CCCcEEEEECC-------CCeeEEEEec-CCCeEEEEEecCCCEE
Q 004885 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD----NNSEIRYWSIN-------NGSCAGVFKC-QSGATQMRFQPRLGRI 697 (725)
Q Consensus 630 ~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs----~Dg~I~IwDl~-------t~~~v~~~~~-~~~V~sv~fspdg~~L 697 (725)
+ ++..++ ...+|..+.|+++|..++++.+ ..+.|.++|++ ..+++..+.. ...++.+.|.|-+.+|
T Consensus 85 k-~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 85 K-QLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred c-EEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 8 676665 4567999999999986665443 24579999998 3455666655 7789999999999999
Q ss_pred EEEEcCCeEEEEECCCC-eEEEEEeCCC
Q 004885 698 LAAAIENYISILDVETQ-VCRLKLQVSH 724 (725)
Q Consensus 698 la~s~Dg~V~IwDl~tg-~~v~~l~GH~ 724 (725)
++|..||.|.+||+++| +.+.+-+-|.
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~ 190 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHS 190 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhc
Confidence 99999999999999998 5666555554
No 97
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.79 E-value=3.2e-18 Score=189.42 Aligned_cols=208 Identities=20% Similarity=0.337 Sum_probs=166.7
Q ss_pred ccCCCCCeeEEEEecCCCccccc------cCCccC-CCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeee
Q 004885 475 QHNGASSKSLLMFGSDGMGSLTS------APNQLT-DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTE 547 (725)
Q Consensus 475 ~~s~s~~~s~l~fs~dg~~~la~------~s~~~~-~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~ 547 (725)
...++.+...+.|.+++..-+.+ ....+. ..+..+.+||||.++++|...+ .
T Consensus 74 l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~---------------------l 132 (745)
T KOG0301|consen 74 LVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGE---------------------L 132 (745)
T ss_pred eEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchh---------------------h
Confidence 44577788888898877522211 111111 2223478999999999993211 1
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004885 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (725)
Q Consensus 548 ~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~ 627 (725)
...+.+|+..|.++++-|++ .++|||.|++|++|.- ++.+.+|.+|...|..+++-++ ..|++|+.||.|++|++
T Consensus 133 ~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~- 207 (745)
T KOG0301|consen 133 VYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDL- 207 (745)
T ss_pred hcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecC-CCeEeecCCceEEEEec-
Confidence 22378999999999999987 7999999999999975 7889999999999999999876 45889999999999999
Q ss_pred CCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeE
Q 004885 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYI 706 (725)
Q Consensus 628 ~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V 706 (725)
+++ ++....+|...|.++...+++. ++++|++|++++||+.. .|+..+.+ ...|+++++-++ +.|++|++||.|
T Consensus 208 ~ge-~l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~N-gDIvvg~SDG~V 282 (745)
T KOG0301|consen 208 DGE-VLLEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLN-GDIVVGGSDGRV 282 (745)
T ss_pred cCc-eeeeeeccceEEEEEEecCCCC-eEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeC-CCEEEeccCceE
Confidence 455 7999999999999999666655 78899999999999987 88888887 447999998887 568899999999
Q ss_pred EEEECCC
Q 004885 707 SILDVET 713 (725)
Q Consensus 707 ~IwDl~t 713 (725)
+||..+.
T Consensus 283 rVfT~~k 289 (745)
T KOG0301|consen 283 RVFTVDK 289 (745)
T ss_pred EEEEecc
Confidence 9998764
No 98
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.79 E-value=1.1e-18 Score=187.35 Aligned_cols=203 Identities=19% Similarity=0.233 Sum_probs=158.9
Q ss_pred CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEE--EecCCC
Q 004885 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQ--LIPAST 555 (725)
Q Consensus 478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~H~ 555 (725)
+....++-+|+|+.. ..+.+++.|+++|+|...+.. +. ...++ ...+..
T Consensus 267 Hia~lt~g~whP~~k--------------~~FlT~s~DgtlRiWdv~~~k-------------~q--~qVik~k~~~g~R 317 (641)
T KOG0772|consen 267 HIAELTCGCWHPDNK--------------EEFLTCSYDGTLRIWDVNNTK-------------SQ--LQVIKTKPAGGKR 317 (641)
T ss_pred ceeeeeccccccCcc--------------cceEEecCCCcEEEEecCCch-------------hh--eeEEeeccCCCcc
Confidence 444567777888654 356678899999999654432 01 11111 112344
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEeccCCC--CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQ--WITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~---~i~~l~~H~~--~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~ 630 (725)
-.|+.|+|++||++||+|+.||.|.+|+..... ...+-..|.. .|+||.|+++|++|++-+.|.+++|||++..+
T Consensus 318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred cCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence 568999999999999999999999999975532 2334467876 89999999999999999999999999999988
Q ss_pred eeeEEEecCC--CCeEEEEEccCCCeEEEEEe------CCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEE
Q 004885 631 YSLRTFTGHS--TTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAA 701 (725)
Q Consensus 631 ~~l~~~~~h~--~~V~sl~fsP~g~~llaSgs------~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s 701 (725)
.++....+.. ..-+.++|+|+.+ ++++|. ..|.+.+||..+...+..+.. ...|..+.|+|.-+.|++++
T Consensus 398 kpL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gs 476 (641)
T KOG0772|consen 398 KPLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGS 476 (641)
T ss_pred cchhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeec
Confidence 7887776543 4568899999977 777764 356799999999888888876 67799999999999999999
Q ss_pred cCCeEEEEE
Q 004885 702 IENYISILD 710 (725)
Q Consensus 702 ~Dg~V~IwD 710 (725)
.||+++||=
T Consensus 477 gdG~~~vyY 485 (641)
T KOG0772|consen 477 GDGTAHVYY 485 (641)
T ss_pred CCCceEEEE
Confidence 999999874
No 99
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=7.1e-19 Score=184.52 Aligned_cols=176 Identities=22% Similarity=0.371 Sum_probs=151.5
Q ss_pred CceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC
Q 004885 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 618 (725)
Q Consensus 542 ~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~---~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D 618 (725)
..+..+...+..|++.|.-+.||++|++||+++.|.++.||.+.. .+..+++.+|..+|..|.|+||.++|++|+.|
T Consensus 211 qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~ 290 (519)
T KOG0293|consen 211 QIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD 290 (519)
T ss_pred cCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch
Confidence 445567788899999999999999999999999999999998755 34578899999999999999999999999999
Q ss_pred CeEEEEECCCCCeeeEEEe-cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeEEEEEecCCC
Q 004885 619 RTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLG 695 (725)
Q Consensus 619 gtIrvWDl~~~~~~l~~~~-~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~ 695 (725)
..+++||+.++. +.+.+. +|...+.+++|.|||.. +++|+.|+.|..||++ |..+..+++ ...|.+++..+||+
T Consensus 291 e~~~lwDv~tgd-~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk 367 (519)
T KOG0293|consen 291 EVLSLWDVDTGD-LRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGK 367 (519)
T ss_pred HheeeccCCcch-hhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCc
Confidence 999999999998 444443 45678999999999985 6699999999999998 555666655 45699999999999
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEE
Q 004885 696 RILAAAIENYISILDVETQVCRLKL 720 (725)
Q Consensus 696 ~Lla~s~Dg~V~IwDl~tg~~v~~l 720 (725)
++++.+.|..|++|++++..++..+
T Consensus 368 ~vl~v~~d~~i~l~~~e~~~dr~li 392 (519)
T KOG0293|consen 368 YVLLVTVDKKIRLYNREARVDRGLI 392 (519)
T ss_pred EEEEEecccceeeechhhhhhhccc
Confidence 9999999999999999887555333
No 100
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.79 E-value=3.5e-18 Score=177.93 Aligned_cols=202 Identities=20% Similarity=0.317 Sum_probs=156.4
Q ss_pred EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCC
Q 004885 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTES 586 (725)
Q Consensus 508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpd-g~~LaSgs~Dg~V~IWdl~~ 586 (725)
++++=+..|.|.+|....--..-..... .......+++.++.+|.+.=+.++|||- .-.|++|.--+.|++|...+
T Consensus 167 ~~aswse~G~V~Vw~l~~~l~~l~~~~~---~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~ 243 (440)
T KOG0302|consen 167 LCASWSENGRVQVWDLAPHLNALSEPGL---EVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST 243 (440)
T ss_pred eeeeecccCcEEEEEchhhhhhhcCccc---cccccccCceEEecccCccceeeecccccccccccCccccceEeeeecc
Confidence 6677777899999954332110000000 0012456788999999999999999992 23588888788999998876
Q ss_pred CeE---EEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCC-eeeEEEecCCCCeEEEEEccCCCeEEEEEeC
Q 004885 587 FTV---KSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (725)
Q Consensus 587 ~~~---i~~l~~H~~~V~~IafsPd-~~~Lasgs~DgtIrvWDl~~~~-~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~ 661 (725)
+.- ...|.+|+..|.++.|+|. ...|++|+.|++|+|||++.+. ......+.|.+.|+-|.|+.+-. +|++|++
T Consensus 244 g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~-lLasG~D 322 (440)
T KOG0302|consen 244 GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP-LLASGGD 322 (440)
T ss_pred CceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcc-eeeecCC
Confidence 432 2346789999999999995 6789999999999999999872 23334488999999999999877 9999999
Q ss_pred CCcEEEEECCC---CeeEEEEec-CCCeEEEEEecCCC-EEEEEEcCCeEEEEECCC
Q 004885 662 NSEIRYWSINN---GSCAGVFKC-QSGATQMRFQPRLG-RILAAAIENYISILDVET 713 (725)
Q Consensus 662 Dg~I~IwDl~t---~~~v~~~~~-~~~V~sv~fspdg~-~Lla~s~Dg~V~IwDl~t 713 (725)
||+++|||+++ +.++..|+. ..+|++|.|+|... .|++++.|..|.|||+..
T Consensus 323 dGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 323 DGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred CceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 99999999985 567888886 78899999999755 566677799999999854
No 101
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=2e-18 Score=183.13 Aligned_cols=210 Identities=19% Similarity=0.288 Sum_probs=164.0
Q ss_pred CCCCcEEEEeeCCCcEEEecC--CCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcE
Q 004885 503 TDMDRFVDDGSLDDNVESFLS--PDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKA 579 (725)
Q Consensus 503 ~~~~~~lasGs~D~~V~vw~s--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpd-g~~LaSgs~Dg~V 579 (725)
....+|+|.|.+|..|.+|+. .+...+...++...........+.-..-.+|++.|.++.|+.+ .+.||+||.|++|
T Consensus 189 ~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV 268 (463)
T KOG0270|consen 189 GGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTV 268 (463)
T ss_pred CCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceE
Confidence 456779999999999999943 3333333333322211111111112233479999999999875 4589999999999
Q ss_pred EEEECCCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEE
Q 004885 580 VLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (725)
Q Consensus 580 ~IWdl~~~~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaS 658 (725)
++||+.++++..++..|...|.++.|+| ...+|++|+.|++|++.|++.....-..+ ...+.|..+.|.|.....+++
T Consensus 269 ~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~ 347 (463)
T KOG0270|consen 269 KLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFV 347 (463)
T ss_pred EEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEEEEecCCCceeEEE
Confidence 9999999999999999999999999999 47889999999999999999654222222 244789999999999888888
Q ss_pred EeCCCcEEEEECCC-CeeEEEEec-CCCeEEEEEecCCC-EEEEEEcCCeEEEEECCC
Q 004885 659 CDNNSEIRYWSINN-GSCAGVFKC-QSGATQMRFQPRLG-RILAAAIENYISILDVET 713 (725)
Q Consensus 659 gs~Dg~I~IwDl~t-~~~v~~~~~-~~~V~sv~fspdg~-~Lla~s~Dg~V~IwDl~t 713 (725)
+..||+|+-+|+|+ ++++.+++. ..+|.+|+++..-. .+++++.|++|++|++..
T Consensus 348 ~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 348 STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence 99999999999997 489988885 67899999987654 566777899999999864
No 102
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.5e-17 Score=161.27 Aligned_cols=204 Identities=21% Similarity=0.270 Sum_probs=166.5
Q ss_pred CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (725)
Q Consensus 478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (725)
+..++-+.+|+|+|. ++++|+.|++|++.....+. ...+ ..-..+.-|.+.
T Consensus 88 hkgsiyc~~ws~~ge---------------liatgsndk~ik~l~fn~dt--~~~~------------g~dle~nmhdgt 138 (350)
T KOG0641|consen 88 HKGSIYCTAWSPCGE---------------LIATGSNDKTIKVLPFNADT--CNAT------------GHDLEFNMHDGT 138 (350)
T ss_pred cCccEEEEEecCccC---------------eEEecCCCceEEEEeccccc--cccc------------CcceeeeecCCc
Confidence 344678899999998 99999999999998444332 1111 112234568899
Q ss_pred eEEEEEcC----CCCEEEEEe-CCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004885 558 VESCHFSP----DGKLLATGG-HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (725)
Q Consensus 558 V~~i~fSp----dg~~LaSgs-~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~ 632 (725)
|.+++|-. .+.+|++++ .|..|++-|...+.....+.+|++-|.++ ++-++-.+++|+.|.+||+||++-.. +
T Consensus 139 irdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~-~ 216 (350)
T KOG0641|consen 139 IRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNS-C 216 (350)
T ss_pred eeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccc-e
Confidence 99999954 345777765 47888888999999999999999999887 44468899999999999999999877 6
Q ss_pred eEEEec-------CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCC
Q 004885 633 LRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIEN 704 (725)
Q Consensus 633 l~~~~~-------h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg 704 (725)
+.++.. ..+.|.+|+..|.|+ ++++|-.|....+||++.++.+..|.. ...|.+++|+|.-.|+++++.|.
T Consensus 217 v~~l~~~~~~~glessavaav~vdpsgr-ll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~ 295 (350)
T KOG0641|consen 217 VNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDM 295 (350)
T ss_pred eeeccCcccCCCcccceeEEEEECCCcc-eeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccc
Confidence 766542 125799999999998 889999999999999999999988865 67899999999999999999999
Q ss_pred eEEEEECCC
Q 004885 705 YISILDVET 713 (725)
Q Consensus 705 ~V~IwDl~t 713 (725)
.|++-|+..
T Consensus 296 ~ikltdlqg 304 (350)
T KOG0641|consen 296 KIKLTDLQG 304 (350)
T ss_pred eEEEeeccc
Confidence 999999864
No 103
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.78 E-value=5.5e-18 Score=180.38 Aligned_cols=200 Identities=18% Similarity=0.270 Sum_probs=172.8
Q ss_pred CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (725)
Q Consensus 477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~ 556 (725)
.+...+.+++.++|+. |+++|+.|..|.+| +..+...+.++++|.+
T Consensus 200 ~h~keil~~avS~Dgk---------------ylatgg~d~~v~Iw-------------------~~~t~ehv~~~~ghr~ 245 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGK---------------YLATGGRDRHVQIW-------------------DCDTLEHVKVFKGHRG 245 (479)
T ss_pred cccceeEEEEEcCCCc---------------EEEecCCCceEEEe-------------------cCcccchhhccccccc
Confidence 3444556677777776 99999999999999 4455577788999999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEE
Q 004885 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~ 636 (725)
.|.+++|-.....|++++.|.+|+||+++....+.++.+|...|..|....-.+.+.+|+.|+++++|++... .-..|
T Consensus 246 ~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee--sqlif 323 (479)
T KOG0299|consen 246 AVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE--SQLIF 323 (479)
T ss_pred ceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc--ceeee
Confidence 9999999877778999999999999999999999999999999999998877777778889999999999543 46788
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-----CC--------CeEEEEEecCCCEEEEEEcC
Q 004885 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----QS--------GATQMRFQPRLGRILAAAIE 703 (725)
Q Consensus 637 ~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-----~~--------~V~sv~fspdg~~Lla~s~D 703 (725)
.+|.+.+-|++|-.+.. |++|+.+|.|.+|++-+.+++.+... .. +|++++..|....+++|+.+
T Consensus 324 rg~~~sidcv~~In~~H--fvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~ 401 (479)
T KOG0299|consen 324 RGGEGSIDCVAFINDEH--FVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWS 401 (479)
T ss_pred eCCCCCeeeEEEecccc--eeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCC
Confidence 89999999999987754 67999999999999999888877752 12 78999999998899999999
Q ss_pred CeEEEEECCCC
Q 004885 704 NYISILDVETQ 714 (725)
Q Consensus 704 g~V~IwDl~tg 714 (725)
|.|++|-++.+
T Consensus 402 G~vrLW~i~~g 412 (479)
T KOG0299|consen 402 GCVRLWKIEDG 412 (479)
T ss_pred CceEEEEecCC
Confidence 99999999887
No 104
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=4.9e-18 Score=181.09 Aligned_cols=194 Identities=21% Similarity=0.318 Sum_probs=159.3
Q ss_pred CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004885 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (725)
Q Consensus 506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~ 585 (725)
+.|++.|+..++|.+|....+ ..+..+.+|--.|+|+.|+-||.+|+|||.||.|.+|.+.
T Consensus 93 G~~l~ag~i~g~lYlWelssG-------------------~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~ 153 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSG-------------------ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT 153 (476)
T ss_pred ceEEEeecccCcEEEEEeccc-------------------cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence 348888889999999944333 3455567899999999999999999999999999999762
Q ss_pred ---------CCeEEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCe
Q 004885 586 ---------SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654 (725)
Q Consensus 586 ---------~~~~i~~l~~H~~~V~~IafsPd--~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~ 654 (725)
+-++++.|..|.-+|+++...+. ..+|+|++.|.++|+||+..+. .+..+. ....+++++.+|.+.
T Consensus 154 ~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~-LLlti~-fp~si~av~lDpae~- 230 (476)
T KOG0646|consen 154 DLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV-LLLTIT-FPSSIKAVALDPAER- 230 (476)
T ss_pred eecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce-eeEEEe-cCCcceeEEEccccc-
Confidence 34678899999999999998774 5689999999999999999987 444443 346799999999977
Q ss_pred EEEEEeCCCcEEEEECCCCe----------------eEEEEec-C--CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 004885 655 LLCSCDNNSEIRYWSINNGS----------------CAGVFKC-Q--SGATQMRFQPRLGRILAAAIENYISILDVETQV 715 (725)
Q Consensus 655 llaSgs~Dg~I~IwDl~t~~----------------~v~~~~~-~--~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~ 715 (725)
.++.|+.+|.|.+.++.... .+..+.+ . ..|+|++++-||..|++|+.||.|+|||+.+.+
T Consensus 231 ~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 231 VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 55688899999998886432 2233333 2 479999999999999999999999999999988
Q ss_pred EEEEEe
Q 004885 716 CRLKLQ 721 (725)
Q Consensus 716 ~v~~l~ 721 (725)
|++++.
T Consensus 311 ~iRtl~ 316 (476)
T KOG0646|consen 311 CIRTLQ 316 (476)
T ss_pred HHHHHh
Confidence 887654
No 105
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.77 E-value=1.1e-18 Score=183.35 Aligned_cols=211 Identities=18% Similarity=0.283 Sum_probs=178.5
Q ss_pred ccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885 475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 554 (725)
Q Consensus 475 ~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H 554 (725)
.+.+...+..+.|-++.. .+++|+.|..|++|.... .....+.++.+.
T Consensus 171 ld~h~gev~~v~~l~~sd---------------tlatgg~Dr~Ik~W~v~~-----------------~k~~~~~tLaGs 218 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSD---------------TLATGGSDRIIKLWNVLG-----------------EKSELISTLAGS 218 (459)
T ss_pred hhccccccceeEEccCcc---------------hhhhcchhhhhhhhhccc-----------------chhhhhhhhhcc
Confidence 344445566777776543 689999999999994422 224566778888
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE
Q 004885 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~ 634 (725)
.+.|+.+.|.++++++++++.|+.+++|+++......+|.+|...|+++.|.-....+++|+.|.+|++||+.+.. |..
T Consensus 219 ~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~-C~k 297 (459)
T KOG0288|consen 219 LGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY-CSK 297 (459)
T ss_pred CCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhh-eec
Confidence 8999999999999999999999999999999999999999999999999998877779999999999999999866 665
Q ss_pred EEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ 714 (725)
Q Consensus 635 ~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg 714 (725)
++.. .+.+..|+..+ ..++++..|+.||+||++...++.....++.|+++..++++..|++++.|.++.++|+++.
T Consensus 298 t~l~-~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~ 373 (459)
T KOG0288|consen 298 TVLP-GSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTK 373 (459)
T ss_pred cccc-cccccceEecc---eeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccc
Confidence 5542 23466666652 2677999999999999999999999999899999999999999999999999999999999
Q ss_pred eEEEEEeC
Q 004885 715 VCRLKLQV 722 (725)
Q Consensus 715 ~~v~~l~G 722 (725)
++++.|.+
T Consensus 374 eI~~~~sA 381 (459)
T KOG0288|consen 374 EIRQTFSA 381 (459)
T ss_pred cEEEEeec
Confidence 98888764
No 106
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.77 E-value=2.5e-17 Score=164.67 Aligned_cols=222 Identities=14% Similarity=0.169 Sum_probs=158.0
Q ss_pred cccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCc------ccccccc--------
Q 004885 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDR------VGRSAEV-------- 539 (725)
Q Consensus 474 l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~------~~~~~~~-------- 539 (725)
....++.++.-++|+|... ..+++.+.|++|++|+...+...... ..-.|..
T Consensus 59 ~~~gh~~svdql~w~~~~~--------------d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~ 124 (313)
T KOG1407|consen 59 VYRGHTDSVDQLCWDPKHP--------------DLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVG 124 (313)
T ss_pred cccCCCcchhhheeCCCCC--------------cceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEe
Confidence 3444555677777777443 47888899999999965544211000 0000100
Q ss_pred --CCCceeeeEEEe-----cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEE
Q 004885 540 --GKGFTFTEFQLI-----PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL 612 (725)
Q Consensus 540 --~~~~~~~~~~~l-----~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~L 612 (725)
.+..++-..++. ......+.-++|+-++.+++....-|+|.|......+++..+..|...+.||.|+|+|++|
T Consensus 125 ~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gryf 204 (313)
T KOG1407|consen 125 NKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYF 204 (313)
T ss_pred cCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceE
Confidence 000111111110 1122334555555555544444445566666655666677778999999999999999999
Q ss_pred EEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEec
Q 004885 613 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP 692 (725)
Q Consensus 613 asgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fsp 692 (725)
++|+.|..+.+||++.-- |++.+..+.-+|..|.|+-+|+ +|++++.|..|-|-++++|..+..+.+.++...|+|+|
T Consensus 205 A~GsADAlvSLWD~~ELi-C~R~isRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHP 282 (313)
T KOG1407|consen 205 ATGSADALVSLWDVDELI-CERCISRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHP 282 (313)
T ss_pred eeccccceeeccChhHhh-hheeeccccCceEEEEeccCcc-eeeccCccceEEeEecccCCeEEEeeccCCceeEEecC
Confidence 999999999999999876 8999999999999999999998 88999999999999999999999999999999999999
Q ss_pred CCCEEEEEEcC---------CeEEEEEC
Q 004885 693 RLGRILAAAIE---------NYISILDV 711 (725)
Q Consensus 693 dg~~Lla~s~D---------g~V~IwDl 711 (725)
....|+.++.| |+|+||-+
T Consensus 283 k~~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 283 KRPLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred CCceeeEEecCCCCccccccceeEEecC
Confidence 97777766663 45666644
No 107
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=4.2e-19 Score=196.86 Aligned_cols=180 Identities=22% Similarity=0.407 Sum_probs=160.8
Q ss_pred CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004885 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (725)
Q Consensus 503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IW 582 (725)
+..+.+|++|+.||+|++|+.. ..+.++++.+|...+..+.|+|-+.++|+|+.|+-+++|
T Consensus 79 ~~~E~LlaagsasgtiK~wDle-------------------eAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iw 139 (825)
T KOG0267|consen 79 DTSERLLAAGSASGTIKVWDLE-------------------EAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIW 139 (825)
T ss_pred CcchhhhcccccCCceeeeehh-------------------hhhhhhhhhccccCcceeeeccceEEeccccccccceeh
Confidence 3344589999999999999443 335667889999999999999999999999999999999
Q ss_pred ECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC
Q 004885 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (725)
Q Consensus 583 dl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D 662 (725)
|++...|.+++.+|...|.+++|+|+|+++++++.|.+++|||+..++ .+..|..|.+.|.++.|+|.. .++++|+.|
T Consensus 140 D~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk-~~~ef~~~e~~v~sle~hp~e-~Lla~Gs~d 217 (825)
T KOG0267|consen 140 DIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK-LSKEFKSHEGKVQSLEFHPLE-VLLAPGSSD 217 (825)
T ss_pred hhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccc-cccccccccccccccccCchh-hhhccCCCC
Confidence 999888999999999999999999999999999999999999999888 789999999999999999984 589999999
Q ss_pred CcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcC
Q 004885 663 SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE 703 (725)
Q Consensus 663 g~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~D 703 (725)
++|++||+++...+...+. ..+|.+.+|+|++..+++|..+
T Consensus 218 ~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 218 RTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 9999999999888887776 6789999999998776665443
No 108
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=7.1e-18 Score=171.85 Aligned_cols=194 Identities=19% Similarity=0.343 Sum_probs=163.8
Q ss_pred CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (725)
Q Consensus 505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl 584 (725)
...++.+++.|.+.++|.... ...+..+.+|.+.|+||.|++.+.++++++.|++..||..
T Consensus 159 tqpi~gtASADhTA~iWs~Es-------------------g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 159 TQPICGTASADHTARIWSLES-------------------GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred CCcceeecccccceeEEeecc-------------------ccceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence 344889999999999994332 3567788999999999999999999999999999999941
Q ss_pred ------C------------------------------C----CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004885 585 ------E------------------------------S----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (725)
Q Consensus 585 ------~------------------------------~----~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvW 624 (725)
. + ..++..|++|.+.|.++.|-..+..++++++|.+..+|
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlw 299 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLW 299 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceee
Confidence 0 0 01345678999999999999999999999999999999
Q ss_pred ECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCC-eeEEEEec-CCCeEEEEEecCCCEEEEEEc
Q 004885 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKC-QSGATQMRFQPRLGRILAAAI 702 (725)
Q Consensus 625 Dl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~-~~v~~~~~-~~~V~sv~fspdg~~Lla~s~ 702 (725)
|++++. .+..+.||....+.++-+|..+ ++++.+.|.+.++||++.. ..+..|.+ ...|+++.|..+ ..+++++.
T Consensus 300 DVEtge-~v~~LtGHd~ELtHcstHptQr-LVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSD 376 (481)
T KOG0300|consen 300 DVETGE-VVNILTGHDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSD 376 (481)
T ss_pred eeccCc-eeccccCcchhccccccCCcce-EEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCC
Confidence 999998 8999999999999999999976 8889999999999999842 34566665 677999999987 67889999
Q ss_pred CCeEEEEECCCC-eEEEEE
Q 004885 703 ENYISILDVETQ-VCRLKL 720 (725)
Q Consensus 703 Dg~V~IwDl~tg-~~v~~l 720 (725)
|.+|+|||+++- ..+.++
T Consensus 377 DrTvKvWdLrNMRsplATI 395 (481)
T KOG0300|consen 377 DRTVKVWDLRNMRSPLATI 395 (481)
T ss_pred CceEEEeeeccccCcceee
Confidence 999999999874 344443
No 109
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=6.4e-18 Score=167.46 Aligned_cols=198 Identities=18% Similarity=0.249 Sum_probs=159.4
Q ss_pred CCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC--CCCEEEEEeCC
Q 004885 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHD 576 (725)
Q Consensus 499 s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp--dg~~LaSgs~D 576 (725)
...++-...-|++++.|+.|++|..... .....+.+|.+|.++|.-++|.. -|.+||+|++|
T Consensus 16 da~lDyygkrlATcsSD~tVkIf~v~~n----------------~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYD 79 (299)
T KOG1332|consen 16 DAQLDYYGKRLATCSSDGTVKIFEVRNN----------------GQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYD 79 (299)
T ss_pred HhhhhhhcceeeeecCCccEEEEEEcCC----------------CCceeeeEecCCCCCeeEEeecccccCcEeeEeecC
Confidence 3445566678999999999999944333 12356788999999999999965 79999999999
Q ss_pred CcEEEEECCCCe--EEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCC--eeeEEEecCCCCeEEEEEcc
Q 004885 577 KKAVLWCTESFT--VKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHP 650 (725)
Q Consensus 577 g~V~IWdl~~~~--~i~~l~~H~~~V~~IafsPd--~~~Lasgs~DgtIrvWDl~~~~--~~l~~~~~h~~~V~sl~fsP 650 (725)
|+|.||.-.+++ ....+..|...|++|+|.|. +-.|++++.||.|.|.++++.. ........|.-.|++++|.|
T Consensus 80 gkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswap 159 (299)
T KOG1332|consen 80 GKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAP 159 (299)
T ss_pred ceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecC
Confidence 999999987753 44566789999999999995 6678999999999999998762 23456678999999999999
Q ss_pred C---C----------CeEEEEEeCCCcEEEEECCCCeeE--EEEe-cCCCeEEEEEecCCC----EEEEEEcCCeEEEEE
Q 004885 651 S---K----------EDLLCSCDNNSEIRYWSINNGSCA--GVFK-CQSGATQMRFQPRLG----RILAAAIENYISILD 710 (725)
Q Consensus 651 ~---g----------~~llaSgs~Dg~I~IwDl~t~~~v--~~~~-~~~~V~sv~fspdg~----~Lla~s~Dg~V~IwD 710 (725)
. | .+-|++|+.|..|+||+..+++.+ .++. |.+.|..++|+|.-+ +|++++.||+|.||.
T Consensus 160 a~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt 239 (299)
T KOG1332|consen 160 ASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT 239 (299)
T ss_pred cCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence 6 3 134789999999999999986433 3344 367799999999753 688999999999997
Q ss_pred CC
Q 004885 711 VE 712 (725)
Q Consensus 711 l~ 712 (725)
.+
T Consensus 240 ~~ 241 (299)
T KOG1332|consen 240 KD 241 (299)
T ss_pred ec
Confidence 65
No 110
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=5.4e-18 Score=189.51 Aligned_cols=207 Identities=15% Similarity=0.250 Sum_probs=163.3
Q ss_pred cccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecC
Q 004885 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (725)
Q Consensus 474 l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 553 (725)
...++.+.+..+.|++... .+|.+||-|+.|++|+.... +...++.+
T Consensus 128 ~f~EH~Rs~~~ldfh~tep--------------~iliSGSQDg~vK~~DlR~~-------------------~S~~t~~~ 174 (839)
T KOG0269|consen 128 VFNEHERSANKLDFHSTEP--------------NILISGSQDGTVKCWDLRSK-------------------KSKSTFRS 174 (839)
T ss_pred HhhhhccceeeeeeccCCc--------------cEEEecCCCceEEEEeeecc-------------------cccccccc
Confidence 4566888889999988554 58999999999999955443 23345556
Q ss_pred CCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 004885 554 STSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (725)
Q Consensus 554 H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~-~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~ 631 (725)
....|++|.|+| .+..|+++.+.|.|.+||++. .++...+.+|.++|.|+.|+|+..+||||+.|+.|+|||..+...
T Consensus 175 nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~ 254 (839)
T KOG0269|consen 175 NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA 254 (839)
T ss_pred cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc
Confidence 788899999999 677899999999999999986 456778899999999999999999999999999999999986552
Q ss_pred eeEEEecCCCCeEEEEEccCCCeEEEEEe--CCCcEEEEECCCCe-eEEEEe-cCCCeEEEEEec-CCCEEEEEEcCCeE
Q 004885 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGS-CAGVFK-CQSGATQMRFQP-RLGRILAAAIENYI 706 (725)
Q Consensus 632 ~l~~~~~h~~~V~sl~fsP~g~~llaSgs--~Dg~I~IwDl~t~~-~v~~~~-~~~~V~sv~fsp-dg~~Lla~s~Dg~V 706 (725)
..........+|.+|+|-|...+.|++|+ .|-.|+|||++..- +..+|. +...++.|+|.. |...+++++.|++|
T Consensus 255 ~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv 334 (839)
T KOG0269|consen 255 KPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTV 334 (839)
T ss_pred cceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHH
Confidence 22222334578999999999999998887 57789999998542 334554 356688899976 33467788889887
Q ss_pred EEEECCC
Q 004885 707 SILDVET 713 (725)
Q Consensus 707 ~IwDl~t 713 (725)
..-.+++
T Consensus 335 ~qh~~kn 341 (839)
T KOG0269|consen 335 LQHLFKN 341 (839)
T ss_pred HHhhhhc
Confidence 6554443
No 111
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.76 E-value=1.3e-17 Score=177.46 Aligned_cols=215 Identities=14% Similarity=0.189 Sum_probs=174.9
Q ss_pred cccccccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEE
Q 004885 470 SRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQ 549 (725)
Q Consensus 470 s~~~l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (725)
............++++.|+|... ..++++|..-|.|-+|+.... ......+.
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~-------------~~lva~GdK~G~VG~Wn~~~~---------------~~d~d~v~ 228 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTEN-------------RKLVAVGDKGGQVGLWNFGTQ---------------EKDKDGVY 228 (498)
T ss_pred eecceeEecccceEEEEecccCc-------------ceEEEEccCCCcEEEEecCCC---------------CCccCceE
Confidence 33455556677899999999554 248999999999999966311 11223456
Q ss_pred EecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004885 550 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (725)
Q Consensus 550 ~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~~--~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl 626 (725)
.+..|+..|.++.|+| +...|++.|+||+|++-|++... .+..+......+.++.|+.+...++.+..=|.+.+||+
T Consensus 229 ~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~ 308 (498)
T KOG4328|consen 229 LFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDL 308 (498)
T ss_pred EeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEe
Confidence 6779999999999999 55689999999999999998743 33333334567888899888777888877779999999
Q ss_pred CCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCC--e---eEEEEecCCCeEEEEEecCCCEEEEEE
Q 004885 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--S---CAGVFKCQSGATQMRFQPRLGRILAAA 701 (725)
Q Consensus 627 ~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~--~---~v~~~~~~~~V~sv~fspdg~~Lla~s 701 (725)
++++.....+.-|...|.+|+++|..+++|++|+.|++++|||++.- + .+..+.|...|.+++|+|.+..|++.+
T Consensus 309 R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~ 388 (498)
T KOG4328|consen 309 RTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC 388 (498)
T ss_pred ecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec
Confidence 99886677778888899999999999999999999999999999852 2 366777788999999999999999999
Q ss_pred cCCeEEEEECC
Q 004885 702 IENYISILDVE 712 (725)
Q Consensus 702 ~Dg~V~IwDl~ 712 (725)
.|+.|+|||..
T Consensus 389 ~D~~IRv~dss 399 (498)
T KOG4328|consen 389 QDNEIRVFDSS 399 (498)
T ss_pred cCCceEEeecc
Confidence 99999999984
No 112
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=2.6e-17 Score=168.24 Aligned_cols=195 Identities=21% Similarity=0.335 Sum_probs=162.1
Q ss_pred EEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 004885 509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 588 (725)
Q Consensus 509 lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~ 588 (725)
+++|++...|--|......+ ........++.....+.+|.+.|+|+++ ++.++|+||.|-+|+|||+....
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~-------~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~ 74 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPK-------GCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRK 74 (362)
T ss_pred EEEeeeeeEEEEEEeccCcc-------ccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchh
Confidence 45677777776664322211 1112234566777888999999999999 58999999999999999999988
Q ss_pred EEEEeccCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEE
Q 004885 589 VKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (725)
Q Consensus 589 ~i~~l~~H~~~V~~IafsPd~~--~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~ 666 (725)
.+..+..|.+.|+++.|.++.. .|++|+.||.|.+|+...-. ++.++++|.+.|+.|+.+|.++ +..+.+.|+.++
T Consensus 75 qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~-~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr 152 (362)
T KOG0294|consen 75 QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE-LLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLR 152 (362)
T ss_pred hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE-EeeeecccccccceeEecCCCc-eEEEEcCCceee
Confidence 8889999999999999999754 89999999999999999875 8999999999999999999988 667888899999
Q ss_pred EEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 004885 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV 715 (725)
Q Consensus 667 IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~ 715 (725)
.||+-+|+.-..+......+.|.|+|.|.++++++. +.|-||-+++-.
T Consensus 153 ~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~-~~i~i~q~d~A~ 200 (362)
T KOG0294|consen 153 TWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGR-NKIDIYQLDNAS 200 (362)
T ss_pred eehhhcCccceeeccCCcceeeEEcCCCCEEEEEec-cEEEEEecccHh
Confidence 999999888777776667777999999998877765 458899887654
No 113
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=1.3e-17 Score=165.29 Aligned_cols=189 Identities=20% Similarity=0.336 Sum_probs=153.9
Q ss_pred CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEE
Q 004885 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKKAVLW 582 (725)
Q Consensus 505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpd--g~~LaSgs~Dg~V~IW 582 (725)
.+.+|+++++|++|.+|.. .+-.+........|...|++|+|.|. |-.||+++.||+|.|.
T Consensus 69 ~G~iLAScsYDgkVIiWke-----------------~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl 131 (299)
T KOG1332|consen 69 FGTILASCSYDGKVIIWKE-----------------ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVL 131 (299)
T ss_pred cCcEeeEeecCceEEEEec-----------------CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEE
Confidence 3469999999999999932 22255666667789999999999994 5589999999999999
Q ss_pred ECCCC---eEEEEeccCCCCeEEEEEcCC---C-----------CEEEEEeCCCeEEEEECCCCCeee-EEEecCCCCeE
Q 004885 583 CTESF---TVKSTLEEHTQWITDVRFSPS---L-----------SRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVM 644 (725)
Q Consensus 583 dl~~~---~~i~~l~~H~~~V~~IafsPd---~-----------~~Lasgs~DgtIrvWDl~~~~~~l-~~~~~h~~~V~ 644 (725)
++++. ...++...|.-.|++++|.|. + ++|++|+.|..|+||+.++....+ .++.+|.+.|.
T Consensus 132 ~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVR 211 (299)
T KOG1332|consen 132 TYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVR 211 (299)
T ss_pred EEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhh
Confidence 88753 334556789999999999995 4 579999999999999999865333 44899999999
Q ss_pred EEEEccCC---CeEEEEEeCCCcEEEEECCCC------eeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885 645 SLDFHPSK---EDLLCSCDNNSEIRYWSINNG------SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE 712 (725)
Q Consensus 645 sl~fsP~g---~~llaSgs~Dg~I~IwDl~t~------~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~ 712 (725)
.++|.|.- ...+++|+.||+|.||-.+.. +++..| ...+..+.|+..|..|++++.|+.|.+|.-.
T Consensus 212 DVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f--~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 212 DVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEF--PDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred hhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccC--CcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 99999973 457899999999999987632 222222 4679999999999999999999999999654
No 114
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=3e-17 Score=167.57 Aligned_cols=207 Identities=16% Similarity=0.156 Sum_probs=163.9
Q ss_pred eeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEE
Q 004885 482 KSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESC 561 (725)
Q Consensus 482 ~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i 561 (725)
..++.|++-|. +++.|..||.|.+| +-.++..-+.+.+|..+|+|+
T Consensus 26 a~~~~Fs~~G~---------------~lAvGc~nG~vvI~-------------------D~~T~~iar~lsaH~~pi~sl 71 (405)
T KOG1273|consen 26 AECCQFSRWGD---------------YLAVGCANGRVVIY-------------------DFDTFRIARMLSAHVRPITSL 71 (405)
T ss_pred cceEEeccCcc---------------eeeeeccCCcEEEE-------------------EccccchhhhhhccccceeEE
Confidence 67888998887 99999999999999 444555667788999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCe-----------------------------------------
Q 004885 562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI----------------------------------------- 600 (725)
Q Consensus 562 ~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V----------------------------------------- 600 (725)
+||+||++|+|+|.|..|.+||+..+.+++.+.- .++|
T Consensus 72 ~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~ 150 (405)
T KOG1273|consen 72 CWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDG 150 (405)
T ss_pred EecCCCCEeeeecCCceeEEEeccCCCceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcc
Confidence 9999999999999999999999988766554321 1111
Q ss_pred ------EEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCC-CCeEEEEEccCCCeEEEEEeCCCcEEEEECCC-
Q 004885 601 ------TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN- 672 (725)
Q Consensus 601 ------~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~-~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t- 672 (725)
.+..|++.|+++++|...|.+.++|.++-+ ++..++-.. ..|..+.|+..|+ +|+.-+.|+.||.|+++.
T Consensus 151 dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e-~vas~rits~~~IK~I~~s~~g~-~liiNtsDRvIR~ye~~di 228 (405)
T KOG1273|consen 151 DLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLE-CVASFRITSVQAIKQIIVSRKGR-FLIINTSDRVIRTYEISDI 228 (405)
T ss_pred ccccccccccccCCCCEEEEecCcceEEEEecchhe-eeeeeeechheeeeEEEEeccCc-EEEEecCCceEEEEehhhh
Confidence 123366677899999999999999999987 777777555 6789999999988 555667799999999862
Q ss_pred ------CeeEEEEe-----cCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCCC
Q 004885 673 ------GSCAGVFK-----CQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQVSHS 725 (725)
Q Consensus 673 ------~~~v~~~~-----~~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~tg~~v~~l~GH~s 725 (725)
+.+....+ ......+++|+.+|.|+++++. -..++||.-..|..++.|.|..|
T Consensus 229 ~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg 293 (405)
T KOG1273|consen 229 DDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG 293 (405)
T ss_pred cccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch
Confidence 12221111 1345788999999999988876 46799999999999999998753
No 115
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.74 E-value=4.1e-17 Score=180.22 Aligned_cols=171 Identities=20% Similarity=0.321 Sum_probs=149.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEECCCC
Q 004885 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP---SLSRLATSSADRTVRVWDTENP 629 (725)
Q Consensus 553 ~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsP---d~~~Lasgs~DgtIrvWDl~~~ 629 (725)
.....|.|+++||+|++||+|..-|.++||++...+....++.|...|.|+.|+- ..++|++++.|..|+|||+...
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn 536 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN 536 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence 4456799999999999999999999999999999888889999999999999976 3578999999999999999866
Q ss_pred CeeeEEEecCCCCeEEEEEcc-------------------------------------------------CCCeEEEEEe
Q 004885 630 DYSLRTFTGHSTTVMSLDFHP-------------------------------------------------SKEDLLCSCD 660 (725)
Q Consensus 630 ~~~l~~~~~h~~~V~sl~fsP-------------------------------------------------~g~~llaSgs 660 (725)
...+.++.+|...|++|.|.- ..+ ++++++
T Consensus 537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t~c 615 (1080)
T KOG1408|consen 537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK-LVVTVC 615 (1080)
T ss_pred cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcc-eEEEEe
Confidence 656667777777777777643 333 566888
Q ss_pred CCCcEEEEECCCCeeEEEEec----CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885 661 NNSEIRYWSINNGSCAGVFKC----QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH 724 (725)
Q Consensus 661 ~Dg~I~IwDl~t~~~v~~~~~----~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~ 724 (725)
.|+.|+|||+.+++.+..|++ .+....+..+|.|-||++.+.|.++.|||..+|+|+.++.||.
T Consensus 616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHs 683 (1080)
T KOG1408|consen 616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHS 683 (1080)
T ss_pred cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcc
Confidence 899999999999999999996 3567888999999999999999999999999999999999996
No 116
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.74 E-value=1.4e-15 Score=159.76 Aligned_cols=194 Identities=15% Similarity=0.160 Sum_probs=144.8
Q ss_pred EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCC
Q 004885 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK-KAVLWCTES 586 (725)
Q Consensus 508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg-~V~IWdl~~ 586 (725)
++++++.|+.|++|+.... +.+..+.. ...+.+++|+|+++++++++.++ .+.+||..+
T Consensus 87 l~~~~~~~~~l~~~d~~~~-------------------~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~ 146 (300)
T TIGR03866 87 LYIANEDDNLVTVIDIETR-------------------KVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT 146 (300)
T ss_pred EEEEcCCCCeEEEEECCCC-------------------eEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCC
Confidence 3445566888999944221 22223322 23468899999999999988775 567889988
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCCeeeEEEecCC-------CCeEEEEEccCCCeEEEE
Q 004885 587 FTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHS-------TTVMSLDFHPSKEDLLCS 658 (725)
Q Consensus 587 ~~~i~~l~~H~~~V~~IafsPd~~~Lasg-s~DgtIrvWDl~~~~~~l~~~~~h~-------~~V~sl~fsP~g~~llaS 658 (725)
++.+..+.. ...+.+++|+|++.+|+++ ..++.|++||++++. ++..+..+. .....++|+|+++.++++
T Consensus 147 ~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~ 224 (300)
T TIGR03866 147 YEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK-VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA 224 (300)
T ss_pred CeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce-eeeeeeecccccccccCCccceEECCCCCEEEEE
Confidence 777655432 3456789999999988654 469999999999876 445443221 123568899999977776
Q ss_pred EeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEEeCC
Q 004885 659 CDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQVS 723 (725)
Q Consensus 659 gs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s-~Dg~V~IwDl~tg~~v~~l~GH 723 (725)
...++.|.+||+++++.+..+.....+.+++|+|++.+|++++ .++.|.|||+++++++.+++..
T Consensus 225 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 225 LGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred cCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence 6667789999999988887766667899999999999988875 5899999999999999988753
No 117
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=5.5e-17 Score=179.55 Aligned_cols=191 Identities=19% Similarity=0.274 Sum_probs=157.4
Q ss_pred EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004885 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 587 (725)
Q Consensus 508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~ 587 (725)
.|+. +.+..|.+|....+. ...+..+ +...|+++.|+++|.+|++|..+|.|.|||..+.
T Consensus 190 ~laV-alg~~vylW~~~s~~-----------------v~~l~~~--~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~ 249 (484)
T KOG0305|consen 190 VLAV-ALGQSVYLWSASSGS-----------------VTELCSF--GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ 249 (484)
T ss_pred eEEE-EecceEEEEecCCCc-----------------eEEeEec--CCCceEEEEECCCCCEEEEeecCCeEEEEehhhc
Confidence 4444 366789999543331 1222222 3788999999999999999999999999999999
Q ss_pred eEEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEE
Q 004885 588 TVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (725)
Q Consensus 588 ~~i~~l~~-H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~ 666 (725)
+.+..+.+ |...|.+++|. ...+.+|+.|+.|..+|++.....+.++.+|...|..+.|++++. .+++|+.|+.|.
T Consensus 250 k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~ 326 (484)
T KOG0305|consen 250 KKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGN-QLASGGNDNVVF 326 (484)
T ss_pred cccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCC-eeccCCCccceE
Confidence 99999998 99999999997 678999999999999999998855566889999999999999988 788999999999
Q ss_pred EEECCCCeeEEEEe-cCCCeEEEEEecCCCE-EEEEEc--CCeEEEEECCCCeEEEEEe
Q 004885 667 YWSINNGSCAGVFK-CQSGATQMRFQPRLGR-ILAAAI--ENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 667 IwDl~t~~~v~~~~-~~~~V~sv~fspdg~~-Lla~s~--Dg~V~IwDl~tg~~v~~l~ 721 (725)
|||.....++..+. +...|..++|+|--.- |++|+. |+.|++||..+|+++..+.
T Consensus 327 Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd 385 (484)
T KOG0305|consen 327 IWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD 385 (484)
T ss_pred eccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc
Confidence 99997666655554 5788999999997554 555443 8999999999998887654
No 118
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=4.4e-17 Score=177.28 Aligned_cols=210 Identities=15% Similarity=0.255 Sum_probs=171.3
Q ss_pred CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004885 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (725)
Q Consensus 503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IW 582 (725)
.+....+++++.|+.+++|+..+. .......++.+.++++|.++|.|+++.+++..+++|+.||+|+.|
T Consensus 303 ~~sep~lit~sed~~lk~WnLqk~-----------~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 303 HPSEPVLITASEDGTLKLWNLQKA-----------KKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW 371 (577)
T ss_pred CCCCCeEEEeccccchhhhhhccc-----------CCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeee
Confidence 455568999999999999976331 112456678999999999999999999999999999999999999
Q ss_pred ECCC----------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee-------------------
Q 004885 583 CTES----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL------------------- 633 (725)
Q Consensus 583 dl~~----------~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l------------------- 633 (725)
++.. .....++.||...|+.+++++....|++|+.||++++|+......|+
T Consensus 372 ~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~ 451 (577)
T KOG0642|consen 372 NLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSR 451 (577)
T ss_pred ccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccch
Confidence 6531 13346788999999999999999999999999999999875433100
Q ss_pred ------------------------EEEec-------CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-
Q 004885 634 ------------------------RTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC- 681 (725)
Q Consensus 634 ------------------------~~~~~-------h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~- 681 (725)
..+.. ....+..|.++|... +.+++..|+.|+++|..++..+.....
T Consensus 452 ~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~~~~~l~s~~a~ 530 (577)
T KOG0642|consen 452 PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAHEDRSIRFFDNKTGKILHSMVAH 530 (577)
T ss_pred hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC-eeEecccCCceecccccccccchheeec
Confidence 00000 113366778888886 777999999999999999999887765
Q ss_pred CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885 682 QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH 724 (725)
Q Consensus 682 ~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~ 724 (725)
...++++++.|+|.+|++++.|+.|++|.+....|+..+..|.
T Consensus 531 ~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 531 KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred cceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 6789999999999999999999999999999999998887774
No 119
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.73 E-value=1e-16 Score=167.15 Aligned_cols=183 Identities=19% Similarity=0.371 Sum_probs=141.2
Q ss_pred EEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCC
Q 004885 509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESF 587 (725)
Q Consensus 509 lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpd-g~~LaSgs~Dg~V~IWdl~~~ 587 (725)
+.+|.--+.|++|...++ .|.. ....+.+|+..|-.++|||. ...||+||.||+|+|||++.+
T Consensus 227 LlsGDc~~~I~lw~~~~g---------~W~v-------d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~ 290 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTG---------SWKV-------DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSG 290 (440)
T ss_pred cccCccccceEeeeeccC---------ceee-------cCccccccccchhhhccCCccCceEEeeecCceEEEEEecCC
Confidence 455555677888833222 1111 12345579999999999995 458999999999999999986
Q ss_pred ---eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--eeeEEEecCCCCeEEEEEccCCCeEEEEEeCC
Q 004885 588 ---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (725)
Q Consensus 588 ---~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~--~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D 662 (725)
.++.+ +.|.+.|+.|.|+....+|++|+.||+++|||++.-+ .++..|+-|..+|++|.|+|....+|++++.|
T Consensus 291 ~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D 369 (440)
T KOG0302|consen 291 PKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGED 369 (440)
T ss_pred CccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCC
Confidence 34443 8899999999999987899999999999999998643 47889999999999999999988889899999
Q ss_pred CcEEEEECCCCe-------------------eEEEEecCCCeEEEEEecCC-CEEEEEEcCCeEEEE
Q 004885 663 SEIRYWSINNGS-------------------CAGVFKCQSGATQMRFQPRL-GRILAAAIENYISIL 709 (725)
Q Consensus 663 g~I~IwDl~t~~-------------------~v~~~~~~~~V~sv~fspdg-~~Lla~s~Dg~V~Iw 709 (725)
..|.|||+.... ++....+...+..|.|++.. ++|++.+.|| +.||
T Consensus 370 ~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 370 NQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred CcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 999999996321 22233335668889999864 4677777777 4444
No 120
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=2.5e-16 Score=161.00 Aligned_cols=207 Identities=18% Similarity=0.301 Sum_probs=149.8
Q ss_pred cccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecC
Q 004885 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (725)
Q Consensus 474 l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 553 (725)
+...+..-++.+.|++... .|..++||+++++|..... ..+..-.
T Consensus 8 l~npP~d~IS~v~f~~~~~---------------~LLvssWDgslrlYdv~~~--------------------~l~~~~~ 52 (323)
T KOG1036|consen 8 LENPPEDGISSVKFSPSSS---------------DLLVSSWDGSLRLYDVPAN--------------------SLKLKFK 52 (323)
T ss_pred cCCCChhceeeEEEcCcCC---------------cEEEEeccCcEEEEeccch--------------------hhhhhee
Confidence 3344455677888886554 6777889999999943222 1222235
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004885 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l 633 (725)
|..+|.+|+|.+ ...+++|+-||.|+++|+.++... .+-.|..+|.||.+.+....+++|++|++|++||.++.. .+
T Consensus 53 ~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~-~~ 129 (323)
T KOG1036|consen 53 HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV-VV 129 (323)
T ss_pred cCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc-cc
Confidence 788999999985 567999999999999999987765 455699999999999988899999999999999999643 33
Q ss_pred EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe---------------eE----------------------
Q 004885 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---------------CA---------------------- 676 (725)
Q Consensus 634 ~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~---------------~v---------------------- 676 (725)
..+.. ...|.++...- + .|+.|+.|..|.+||+++.. |+
T Consensus 130 ~~~d~-~kkVy~~~v~g--~-~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~ 205 (323)
T KOG1036|consen 130 GTFDQ-GKKVYCMDVSG--N-RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEY 205 (323)
T ss_pred ccccc-CceEEEEeccC--C-EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEc
Confidence 33332 22566655542 2 34455556667777776321 11
Q ss_pred -----------EEEecC----------CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885 677 -----------GVFKCQ----------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQV 722 (725)
Q Consensus 677 -----------~~~~~~----------~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~G 722 (725)
..|++| -+|++|+|+|..+.|++|++||.|.+||+.+.+.++.|.+
T Consensus 206 ~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~ 272 (323)
T KOG1036|consen 206 FDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK 272 (323)
T ss_pred cCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC
Confidence 122221 2489999999999999999999999999999887776654
No 121
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.73 E-value=1.6e-15 Score=159.35 Aligned_cols=191 Identities=14% Similarity=0.138 Sum_probs=145.5
Q ss_pred cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECC
Q 004885 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE 585 (725)
Q Consensus 507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~L-aSgs~Dg~V~IWdl~ 585 (725)
.++++++.|+.|++|..... +.+..+..|. .+.+++|+|+++.+ ++++.|+.|++||+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~-------------------~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~ 61 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATL-------------------EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLA 61 (300)
T ss_pred cEEEEecCCCEEEEEECCCC-------------------ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECC
Confidence 46788899999999944222 2344444443 36789999999976 566788999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC-C
Q 004885 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-S 663 (725)
Q Consensus 586 ~~~~i~~l~~H~~~V~~IafsPd~~~Lasg-s~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D-g 663 (725)
+++.+..+..+.. +..++|+|+++.++++ +.|+.|++||+.+.. .+..+.. ...+.+++|+|++..++ ++..+ .
T Consensus 62 ~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~-~~~~~~~-~~~~~~~~~~~dg~~l~-~~~~~~~ 137 (300)
T TIGR03866 62 TGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRK-VLAEIPV-GVEPEGMAVSPDGKIVV-NTSETTN 137 (300)
T ss_pred CCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCe-EEeEeeC-CCCcceEEECCCCCEEE-EEecCCC
Confidence 9888777765544 5688999999877655 568999999999866 5555542 23468899999998554 55544 4
Q ss_pred cEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEEe
Q 004885 664 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 664 ~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s-~Dg~V~IwDl~tg~~v~~l~ 721 (725)
.+.+||.++++++..+.....+..++|+|++.+|++++ .++.|++||+++++++..+.
T Consensus 138 ~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~ 196 (300)
T TIGR03866 138 MAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKIT 196 (300)
T ss_pred eEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeee
Confidence 57788999888877665556678899999999887665 48999999999998887765
No 122
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.73 E-value=1.1e-16 Score=171.11 Aligned_cols=230 Identities=15% Similarity=0.173 Sum_probs=185.4
Q ss_pred cCCCCCeeEEEEecCCCcccccc-----------CCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCce
Q 004885 476 HNGASSKSLLMFGSDGMGSLTSA-----------PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (725)
Q Consensus 476 ~s~s~~~s~l~fs~dg~~~la~~-----------s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~ 544 (725)
.+.+.++....|-.+|. .-.++ +........++++|+..+.|++|+.. .
T Consensus 51 as~~gdk~~~~~~K~g~-~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~-------------------~ 110 (673)
T KOG4378|consen 51 ASMAGDKVMRIKEKDGK-TPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLR-------------------A 110 (673)
T ss_pred eecCCceeEEEecccCC-CCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhH-------------------H
Confidence 44455666666766664 11111 11122334688999999999999432 2
Q ss_pred eeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccC-CCCeEEEEEcCCCCE-EEEEeCCCeEE
Q 004885 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSR-LATSSADRTVR 622 (725)
Q Consensus 545 ~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H-~~~V~~IafsPd~~~-Lasgs~DgtIr 622 (725)
....+.+++|.+.|+|+.++-...+||+++..|-|.|..+.++....+|... ...|.-+.|+|..+. |.+++++|.|.
T Consensus 111 kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vt 190 (673)
T KOG4378|consen 111 KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVT 190 (673)
T ss_pred HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEE
Confidence 2345677899999999999999999999999999999999987777777644 345668999997665 56788999999
Q ss_pred EEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEc
Q 004885 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI 702 (725)
Q Consensus 623 vWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~ 702 (725)
+||+............|..+...|||+|..+.+|++.+.|..|.+||++.......+....+.+.++|.++|.+|++|..
T Consensus 191 lwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 191 LWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNS 270 (673)
T ss_pred EEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecC
Confidence 99999877555666789999999999999999999999999999999998888888888899999999999999999999
Q ss_pred CCeEEEEECCCC-eEEEEEeCCCC
Q 004885 703 ENYISILDVETQ-VCRLKLQVSHS 725 (725)
Q Consensus 703 Dg~V~IwDl~tg-~~v~~l~GH~s 725 (725)
.|.|..||++.- .++..+..|+.
T Consensus 271 ~G~~i~YD~R~~k~Pv~v~sah~~ 294 (673)
T KOG4378|consen 271 KGELIAYDMRSTKAPVAVRSAHDA 294 (673)
T ss_pred CceEEEEecccCCCCceEeeeccc
Confidence 999999999865 78888888863
No 123
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.72 E-value=5.6e-16 Score=157.06 Aligned_cols=210 Identities=22% Similarity=0.286 Sum_probs=156.6
Q ss_pred CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (725)
Q Consensus 477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~ 556 (725)
.+...++.+.|-|..+ -++.++++|.++++| +..++.+...++ ..+
T Consensus 99 ~Hky~iss~~WyP~Dt--------------GmFtssSFDhtlKVW-------------------DtnTlQ~a~~F~-me~ 144 (397)
T KOG4283|consen 99 GHKYAISSAIWYPIDT--------------GMFTSSSFDHTLKVW-------------------DTNTLQEAVDFK-MEG 144 (397)
T ss_pred cceeeeeeeEEeeecC--------------ceeecccccceEEEe-------------------ecccceeeEEee-cCc
Confidence 3445677788888665 267889999999999 333444444332 356
Q ss_pred CeEEEEEcC---CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCE-EEEEeCCCeEEEEECCCCCee
Q 004885 557 KVESCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYS 632 (725)
Q Consensus 557 ~V~~i~fSp---dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~-Lasgs~DgtIrvWDl~~~~~~ 632 (725)
.|+.-+||| ...+||+|..|-.|+++|+.++.+.+++.+|...|.+|.|+|...+ |+||+.||.||+||++....|
T Consensus 145 ~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgc 224 (397)
T KOG4283|consen 145 KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGC 224 (397)
T ss_pred eeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccce
Confidence 788899988 3447888989999999999999999999999999999999997665 689999999999999876445
Q ss_pred eEEEe--------------cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEE-EEe---c----CCCeEEEEE
Q 004885 633 LRTFT--------------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFK---C----QSGATQMRF 690 (725)
Q Consensus 633 l~~~~--------------~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~-~~~---~----~~~V~sv~f 690 (725)
.+++. .|.+.|..++|..++.+ +++++.|..+++|+..+|+-.. .+. + +..+. +.
T Consensus 225 f~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~-l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~- 301 (397)
T KOG4283|consen 225 FRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY-LASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ- 301 (397)
T ss_pred eEEeecccCccCccccccccccceeeeeeecccchh-hhhccCccceEEeecccCcccccccccccccccccceEE-Ee-
Confidence 55443 56688999999999984 5588889999999998875322 111 1 11222 22
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885 691 QPRLGRILAAAIENYISILDVETQVCRLKLQVS 723 (725)
Q Consensus 691 spdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH 723 (725)
+-+...++..-.++.+.++++-.|..|+.+.+|
T Consensus 302 ~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h 334 (397)
T KOG4283|consen 302 SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH 334 (397)
T ss_pred ecccceEEEEecCCeEEEEEccCceEEEeeecc
Confidence 333334444455688888888888888888877
No 124
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=8.1e-16 Score=157.86 Aligned_cols=177 Identities=23% Similarity=0.345 Sum_probs=149.8
Q ss_pred eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC--CCeEEE
Q 004885 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRV 623 (725)
Q Consensus 546 ~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~--DgtIrv 623 (725)
+..+.+....+.|.++.|+++|.++++++.|.+|+|||..+++.++++..+...|..++|......++.++. |.+||+
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 334455556788999999999999999999999999999999999999988889999999876666666665 899999
Q ss_pred EECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec----------------------
Q 004885 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---------------------- 681 (725)
Q Consensus 624 WDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~---------------------- 681 (725)
.++.+.+ .++.|.||...|.+|+.+|.++ .+++++.|++|++||++..+|...+..
T Consensus 85 Lsl~dNk-ylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 85 LSLHDNK-YLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSE 162 (311)
T ss_pred EEeecCc-eEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCC
Confidence 9999988 7999999999999999999986 667999999999999995544322110
Q ss_pred ------------------------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885 682 ------------------------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH 724 (725)
Q Consensus 682 ------------------------~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~ 724 (725)
...++.|.|+|||++++.+...+.+++.|.-+|..+.+|.+|.
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~ 229 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYP 229 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeecc
Confidence 2236778999999999999999999999999999888888775
No 125
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.71 E-value=2.3e-16 Score=160.68 Aligned_cols=158 Identities=16% Similarity=0.334 Sum_probs=136.4
Q ss_pred CCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeEE-EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004885 553 ASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (725)
Q Consensus 553 ~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~-~~~i-~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~ 629 (725)
.-.+.|.+|+||| ...+++++|.|++||+|++.. +..+ +....|.++|.+++|+.|+..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 4557799999999 566777999999999999976 2322 345678999999999999999999999999999999998
Q ss_pred CeeeEEEecCCCCeEEEEEccCCC-eEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 004885 630 DYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 708 (725)
Q Consensus 630 ~~~l~~~~~h~~~V~sl~fsP~g~-~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~I 708 (725)
. +..+..|.++|.++.|-+... .+|++|+.|++|++||.+...++.++...+.|+++..-. ..++++..++.|.+
T Consensus 105 Q--~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~--pm~vVata~r~i~v 180 (347)
T KOG0647|consen 105 Q--VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLY--PMAVVATAERHIAV 180 (347)
T ss_pred C--eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccC--ceeEEEecCCcEEE
Confidence 6 778888999999999987644 377899999999999999999999999888898887654 46788888999999
Q ss_pred EECCCC
Q 004885 709 LDVETQ 714 (725)
Q Consensus 709 wDl~tg 714 (725)
|+|+.+
T Consensus 181 ynL~n~ 186 (347)
T KOG0647|consen 181 YNLENP 186 (347)
T ss_pred EEcCCC
Confidence 999765
No 126
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.71 E-value=1.2e-16 Score=176.50 Aligned_cols=190 Identities=17% Similarity=0.321 Sum_probs=154.2
Q ss_pred CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC---CCCEEEEEeCCCcE
Q 004885 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP---DGKLLATGGHDKKA 579 (725)
Q Consensus 503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp---dg~~LaSgs~Dg~V 579 (725)
.+....|++|..-|+++++ +-..+++...+++|...|.|+.||. ..++||+++.|..|
T Consensus 468 Sp~gqhLAsGDr~GnlrVy-------------------~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlI 528 (1080)
T KOG1408|consen 468 SPDGQHLASGDRGGNLRVY-------------------DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLI 528 (1080)
T ss_pred CCCcceecccCccCceEEE-------------------EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceE
Confidence 3444589999999999999 3344466778889999999999986 45689999999999
Q ss_pred EEEECCC-CeEEEEeccCCCC-------------------------------------------------eEEEEEcCCC
Q 004885 580 VLWCTES-FTVKSTLEEHTQW-------------------------------------------------ITDVRFSPSL 609 (725)
Q Consensus 580 ~IWdl~~-~~~i~~l~~H~~~-------------------------------------------------V~~IafsPd~ 609 (725)
.|||+.. ...+.++.+|+.. +++++..|+.
T Consensus 529 HV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~ 608 (1080)
T KOG1408|consen 529 HVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTS 608 (1080)
T ss_pred EEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCc
Confidence 9999853 2233333333333 4566666666
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEEEec---CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCe
Q 004885 610 SRLATSSADRTVRVWDTENPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGA 685 (725)
Q Consensus 610 ~~Lasgs~DgtIrvWDl~~~~~~l~~~~~---h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V 685 (725)
+++++++.|+.|+|||+.+++ .++.|++ |.+....|..+|.|.++. +.+.|+++.|+|+.+++|+..+.+ ...|
T Consensus 609 k~v~t~cQDrnirif~i~sgK-q~k~FKgs~~~eG~lIKv~lDPSgiY~a-tScsdktl~~~Df~sgEcvA~m~GHsE~V 686 (1080)
T KOG1408|consen 609 KLVVTVCQDRNIRIFDIESGK-QVKSFKGSRDHEGDLIKVILDPSGIYLA-TSCSDKTLCFVDFVSGECVAQMTGHSEAV 686 (1080)
T ss_pred ceEEEEecccceEEEeccccc-eeeeecccccCCCceEEEEECCCccEEE-EeecCCceEEEEeccchhhhhhcCcchhe
Confidence 889999999999999999988 6788875 667788899999998555 555599999999999999988876 5669
Q ss_pred EEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004885 686 TQMRFQPRLGRILAAAIENYISILDVET 713 (725)
Q Consensus 686 ~sv~fspdg~~Lla~s~Dg~V~IwDl~t 713 (725)
+.+.|.+|.++|++++.||.|.||.+..
T Consensus 687 TG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 687 TGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eeeeecccchhheeecCCceEEEEECch
Confidence 9999999999999999999999999864
No 127
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.71 E-value=7.9e-17 Score=172.42 Aligned_cols=191 Identities=18% Similarity=0.338 Sum_probs=155.3
Q ss_pred CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004885 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (725)
Q Consensus 506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~ 585 (725)
.+.+.+|+. +.|+||+..... +......+.++ .....|++|...|||+.|++|++-.+|.|||+.
T Consensus 431 trhVyTgGk-gcVKVWdis~pg-------------~k~PvsqLdcl-~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 431 TRHVYTGGK-GCVKVWDISQPG-------------NKSPVSQLDCL-NRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred cceeEecCC-CeEEEeeccCCC-------------CCCcccccccc-CcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 356777776 789999654432 11111222222 123569999999999999999999999999997
Q ss_pred CCeE--EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC
Q 004885 586 SFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (725)
Q Consensus 586 ~~~~--i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg 663 (725)
.... ...+....-.++.++.+||.+..++|+.||.|.|||+.+.. .++.|.+|...+.||+++++|..+. +|+-|.
T Consensus 496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-~VrqfqGhtDGascIdis~dGtklW-TGGlDn 573 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISKDGTKLW-TGGLDN 573 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-eeecccCCCCCceeEEecCCCceee-cCCCcc
Confidence 6433 33344444568889999999999999999999999999987 7999999999999999999998665 999999
Q ss_pred cEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004885 664 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 713 (725)
Q Consensus 664 ~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~t 713 (725)
+||.||++++..+.......-|.++..+|.+.+|++|-..+.|.|.....
T Consensus 574 tvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~sk 623 (705)
T KOG0639|consen 574 TVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK 623 (705)
T ss_pred ceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCC
Confidence 99999999998887777778899999999999999999999999887754
No 128
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=2.3e-16 Score=167.48 Aligned_cols=193 Identities=17% Similarity=0.227 Sum_probs=153.0
Q ss_pred CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 004885 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT 584 (725)
Q Consensus 506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl 584 (725)
.++|++||.|.+|++|+...+ ++..++..|.+.|.++.|+| ...+|++|++|++|.+.|.
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g-------------------~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~ 316 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTG-------------------KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDC 316 (463)
T ss_pred ceeEEecCCCceEEEEEcCCC-------------------CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeec
Confidence 358999999999999954333 56677888999999999999 4569999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC
Q 004885 585 ESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (725)
Q Consensus 585 ~~~~~i~~l~~H~~~V~~IafsPd-~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg 663 (725)
+........-.-.+.|..++|+|. ...++++..||+|+-+|+++...++.++..|.+.|.+|++++.-+.++++++.|+
T Consensus 317 R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~ 396 (463)
T KOG0270|consen 317 RDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDK 396 (463)
T ss_pred cCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccc
Confidence 852222111123567999999995 4567788899999999999997799999999999999999999899999999999
Q ss_pred cEEEEECCCCeeEEEEec---CCCeEEEEEecCCCE-EEEEEcCCeEEEEECCCCeEE
Q 004885 664 EIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCR 717 (725)
Q Consensus 664 ~I~IwDl~t~~~v~~~~~---~~~V~sv~fspdg~~-Lla~s~Dg~V~IwDl~tg~~v 717 (725)
.|++|++.......+..+ -+...|++++|+-.+ +++|+..+.++|||+.+...+
T Consensus 397 ~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 397 VVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred eEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 999999975444322222 234667778887665 455566778999999887544
No 129
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.71 E-value=4e-17 Score=169.32 Aligned_cols=209 Identities=17% Similarity=0.225 Sum_probs=171.2
Q ss_pred EEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC
Q 004885 486 MFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP 565 (725)
Q Consensus 486 ~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp 565 (725)
..+.||..+++-..+.+ ..+++|+.||.|++|+. ....+..++++|.+.|..|++..
T Consensus 63 ~gHrdGV~~lakhp~~l----s~~aSGs~DG~VkiWnl-------------------sqR~~~~~f~AH~G~V~Gi~v~~ 119 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKL----STVASGSCDGEVKIWNL-------------------SQRECIRTFKAHEGLVRGICVTQ 119 (433)
T ss_pred cccccccchhhcCcchh----hhhhccccCceEEEEeh-------------------hhhhhhheeecccCceeeEEecc
Confidence 44555555555443322 46799999999999943 23356778899999999999975
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEE
Q 004885 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645 (725)
Q Consensus 566 dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~s 645 (725)
..+++++.|++|+.|-++. .+++++.+ .+.+..|+-+..+..++||+. .|.|||..... ++..+..-...|.+
T Consensus 120 --~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~-Pv~smswG~Dti~s 192 (433)
T KOG0268|consen 120 --TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDN-PVSSMSWGADSISS 192 (433)
T ss_pred --cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCC-ccceeecCCCceeE
Confidence 7789999999999999865 46667765 456788888877888999865 48999998766 78888877788999
Q ss_pred EEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEEeCCC
Q 004885 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQVSH 724 (725)
Q Consensus 646 l~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg-~~v~~l~GH~ 724 (725)
+.|+|....+|++|..|+.|.+||++++.++..+...-..+.|||+|..-.++++..|..++.||++.- +.+..+.+|-
T Consensus 193 vkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhv 272 (433)
T KOG0268|consen 193 VKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHV 272 (433)
T ss_pred EecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccc
Confidence 999999999999999999999999999999998887788999999998777888888999999999875 6777777774
No 130
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.70 E-value=1.2e-16 Score=165.79 Aligned_cols=237 Identities=12% Similarity=0.205 Sum_probs=174.4
Q ss_pred cccCCCCCeeEEEEecCCCccccc---cCC---ccCCCCcEEEEeeCCCcEEEecCCCCC------------------CC
Q 004885 474 LQHNGASSKSLLMFGSDGMGSLTS---APN---QLTDMDRFVDDGSLDDNVESFLSPDDA------------------DP 529 (725)
Q Consensus 474 l~~s~s~~~s~l~fs~dg~~~la~---~s~---~~~~~~~~lasGs~D~~V~vw~s~~~~------------------~~ 529 (725)
...+++.+..+..|+.....++.. ... .+.-....+.+++.|++|+.|...... ..
T Consensus 81 ~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~ 160 (433)
T KOG0268|consen 81 TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNS 160 (433)
T ss_pred hhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccCCcceeeeccccccccccccccc
Confidence 455677777788887665322111 000 000111456677899999999633210 00
Q ss_pred CCcc----ccccccCCCceeeeEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEE
Q 004885 530 RDRV----GRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR 604 (725)
Q Consensus 530 ~~~~----~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg-~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~Ia 604 (725)
.+.. ..+|+.... .++..+.--.+.|.||.|+|-. .+|++|+.|+.|.+||++...++..+. -...-+.|+
T Consensus 161 ~FaTcGe~i~IWD~~R~---~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~Is 236 (433)
T KOG0268|consen 161 VFATCGEQIDIWDEQRD---NPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTIC 236 (433)
T ss_pred cccccCceeeecccccC---CccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eecccccee
Confidence 0111 123433322 3445555556789999999954 478888899999999999988876554 245567899
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--C
Q 004885 605 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--Q 682 (725)
Q Consensus 605 fsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~ 682 (725)
|+|+...|++++.|..+..||++.-..++..+.+|.+.|.+|+|+|.|.. |++|+.|.+|+||.++.+.....+.. -
T Consensus 237 wnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~E-fvsgsyDksIRIf~~~~~~SRdiYhtkRM 315 (433)
T KOG0268|consen 237 WNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQE-FVSGSYDKSIRIFPVNHGHSRDIYHTKRM 315 (433)
T ss_pred cCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcch-hccccccceEEEeecCCCcchhhhhHhhh
Confidence 99988889999999999999999988889999999999999999999985 56999999999999998766554432 4
Q ss_pred CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 004885 683 SGATQMRFQPRLGRILAAAIENYISILDVETQV 715 (725)
Q Consensus 683 ~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~ 715 (725)
..|.+|.|+.|..++++|+.|+.|++|.....+
T Consensus 316 q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 316 QHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred heeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 569999999999999999999999999876543
No 131
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=4.4e-15 Score=151.65 Aligned_cols=201 Identities=17% Similarity=0.305 Sum_probs=153.6
Q ss_pred CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEE
Q 004885 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLW 582 (725)
Q Consensus 505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp--dg~~LaSgs~Dg~V~IW 582 (725)
+++-+++|+.|.+|++|.+.++ ..++......+.|.+.|..|.|.+ -|..+|+|++|++|.||
T Consensus 24 ~GRRmAtCSsDq~vkI~d~~~~---------------s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 24 YGRRMATCSSDQTVKIWDSTSD---------------SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCceeeeccCCCcEEEEeccCC---------------CCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 3348899999999999965333 346777788899999999999965 68999999999999999
Q ss_pred ECC---------CCeEEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCC---------------------
Q 004885 583 CTE---------SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPD--------------------- 630 (725)
Q Consensus 583 dl~---------~~~~i~~l~~H~~~V~~IafsPd--~~~Lasgs~DgtIrvWDl~~~~--------------------- 630 (725)
.-. ......++......|++|.|.|. |-.|++++.||+||||+.-...
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 641 22345567777899999999994 7789999999999999753210
Q ss_pred ----e-----------------------------------------eeEEEecCCCCeEEEEEccCC---CeEEEEEeCC
Q 004885 631 ----Y-----------------------------------------SLRTFTGHSTTVMSLDFHPSK---EDLLCSCDNN 662 (725)
Q Consensus 631 ----~-----------------------------------------~l~~~~~h~~~V~sl~fsP~g---~~llaSgs~D 662 (725)
. .+..+.+|..+|++|+|.|.- -+++++++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 0 122234678899999999972 3478899999
Q ss_pred CcEEEEECCCCe--------------------eEEEEe-cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC---CeEEE
Q 004885 663 SEIRYWSINNGS--------------------CAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET---QVCRL 718 (725)
Q Consensus 663 g~I~IwDl~t~~--------------------~v~~~~-~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~t---g~~v~ 718 (725)
| |+||.++... .+..+. |.+.|..++|.-.|..|.+++.||.|++|...- .+|+.
T Consensus 249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~s 327 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTS 327 (361)
T ss_pred c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeee
Confidence 9 9999997311 122222 256899999999998999999999999997543 25665
Q ss_pred EEe
Q 004885 719 KLQ 721 (725)
Q Consensus 719 ~l~ 721 (725)
.|+
T Consensus 328 v~~ 330 (361)
T KOG2445|consen 328 VLK 330 (361)
T ss_pred EEe
Confidence 554
No 132
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.70 E-value=1.6e-15 Score=159.00 Aligned_cols=213 Identities=17% Similarity=0.229 Sum_probs=169.1
Q ss_pred cccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecC
Q 004885 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (725)
Q Consensus 474 l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 553 (725)
+...+...+-.+.|.|... ..+++||.|.+|.+|..++..-.+.. ...+..+.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD--------------~vIASgSeD~~v~vW~IPe~~l~~~l------------tepvv~L~g 129 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFND--------------CVIASGSEDTKVMVWQIPENGLTRDL------------TEPVVELYG 129 (472)
T ss_pred CccCccccccccccCccCC--------------ceeecCCCCceEEEEECCCcccccCc------------ccceEEEee
Confidence 4444555666677777443 58999999999999987776432222 256788999
Q ss_pred CCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004885 554 STSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (725)
Q Consensus 554 H~~~V~~i~fSpd-g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~ 632 (725)
|...|--+.|+|. .+.|++++.|.+|.|||+.+++.+.++. |...|+++.|+.||.+|+|.+.|+.|||||.++++ .
T Consensus 130 H~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~-~ 207 (472)
T KOG0303|consen 130 HQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT-V 207 (472)
T ss_pred cceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCc-E
Confidence 9999999999995 4589999999999999999999988887 99999999999999999999999999999999998 5
Q ss_pred eEEEecCCC-CeEEEEEccCCCeEEEEEe---CCCcEEEEECCCCe---eEEEEecCCCeEEEEEecCCCEEEEEEc-CC
Q 004885 633 LRTFTGHST-TVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNGS---CAGVFKCQSGATQMRFQPRLGRILAAAI-EN 704 (725)
Q Consensus 633 l~~~~~h~~-~V~sl~fsP~g~~llaSgs---~Dg~I~IwDl~t~~---~v~~~~~~~~V~sv~fspdg~~Lla~s~-Dg 704 (725)
+..-.+|.+ .-..+.|-.++. ++.+|- .+..|-+||..+-+ ....+....+|.---|++|...++.++. |+
T Consensus 208 v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~ 286 (472)
T KOG0303|consen 208 VSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDS 286 (472)
T ss_pred eeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCc
Confidence 666677765 346677888877 665543 46789999976533 3345555777888888999887766665 99
Q ss_pred eEEEEECCCCe
Q 004885 705 YISILDVETQV 715 (725)
Q Consensus 705 ~V~IwDl~tg~ 715 (725)
.|+.|.+....
T Consensus 287 ~IRYyEit~d~ 297 (472)
T KOG0303|consen 287 SIRYFEITNEP 297 (472)
T ss_pred ceEEEEecCCC
Confidence 99999997764
No 133
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.69 E-value=1.4e-15 Score=171.59 Aligned_cols=193 Identities=22% Similarity=0.315 Sum_probs=165.3
Q ss_pred cCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 004885 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (725)
Q Consensus 502 ~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~I 581 (725)
+..-++|+..|...|.|.+|+...+- ....+..-..|.++|+.++...-++.+++++.||.+++
T Consensus 456 vs~CGNF~~IG~S~G~Id~fNmQSGi----------------~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkf 519 (910)
T KOG1539|consen 456 VSFCGNFVFIGYSKGTIDRFNMQSGI----------------HRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKF 519 (910)
T ss_pred EeccCceEEEeccCCeEEEEEcccCe----------------eecccccCccccCceeEEEecCCCceEEEccCcceEEE
Confidence 34455688889999999999665552 11111123589999999999888889999999999999
Q ss_pred EECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeC
Q 004885 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (725)
Q Consensus 582 Wdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~ 661 (725)
||......+..+. -...+.++..+.....++.+..|-.|+++|+.+.. .++.|.+|...|++++|+|+|+ ++++++.
T Consensus 520 w~f~~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k-vvR~f~gh~nritd~~FS~Dgr-Wlisasm 596 (910)
T KOG1539|consen 520 WDFKKKVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRK-VVREFWGHGNRITDMTFSPDGR-WLISASM 596 (910)
T ss_pred EecCCcceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhh-hhHHhhccccceeeeEeCCCCc-EEEEeec
Confidence 9999888777775 35678899999988999999999999999999988 7999999999999999999999 5558888
Q ss_pred CCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcC-CeEEEEECCC
Q 004885 662 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-NYISILDVET 713 (725)
Q Consensus 662 Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~D-g~V~IwDl~t 713 (725)
|++||+||+.++.++-.+....+++++.|+|+|.+|+++..| ..|++|.=.+
T Consensus 597 D~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 597 DSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred CCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 999999999999999999889999999999999999999988 7899997544
No 134
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.68 E-value=2.7e-16 Score=168.36 Aligned_cols=199 Identities=16% Similarity=0.176 Sum_probs=159.8
Q ss_pred CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004885 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (725)
Q Consensus 503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IW 582 (725)
....+-|.+|+.-.++.+|+..... .+....+....-..++++.+||.++.++|+.||.|.||
T Consensus 474 ~pdgrtLivGGeastlsiWDLAapT-----------------prikaeltssapaCyALa~spDakvcFsccsdGnI~vw 536 (705)
T KOG0639|consen 474 LPDGRTLIVGGEASTLSIWDLAAPT-----------------PRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVW 536 (705)
T ss_pred cCCCceEEeccccceeeeeeccCCC-----------------cchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEE
Confidence 3445567788888888999543331 11111222333457789999999999999999999999
Q ss_pred ECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC
Q 004885 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (725)
Q Consensus 583 dl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D 662 (725)
|+.+...++.|.+|...+.||.++++|..|.||+-|.+||.||++++.. +.. ....+.|.++.++|.++ +++.|..+
T Consensus 537 DLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrq-lqq-hdF~SQIfSLg~cP~~d-WlavGMen 613 (705)
T KOG0639|consen 537 DLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ-LQQ-HDFSSQIFSLGYCPTGD-WLAVGMEN 613 (705)
T ss_pred EcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhh-hhh-hhhhhhheecccCCCcc-ceeeeccc
Confidence 9999999999999999999999999999999999999999999998763 211 12347899999999998 66789999
Q ss_pred CcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 663 SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 663 g~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
+.|.|.............+...|.++.|.+.|+++++.+.|+.+..|..--|..|...+
T Consensus 614 s~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk 672 (705)
T KOG0639|consen 614 SNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK 672 (705)
T ss_pred CcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc
Confidence 99998888765555555567889999999999999999999999999988887666544
No 135
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=7.6e-16 Score=157.40 Aligned_cols=161 Identities=23% Similarity=0.357 Sum_probs=136.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEe
Q 004885 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~ 637 (725)
..||.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|++++|+++|+.|+|++.|..|++||+..+. ++..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs-~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS-PLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-ceeEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999998 677665
Q ss_pred cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--C----CCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004885 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--Q----SGATQMRFQPRLGRILAAAIENYISILDV 711 (725)
Q Consensus 638 ~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~----~~V~sv~fspdg~~Lla~s~Dg~V~IwDl 711 (725)
..++|+.+.|+|...+.++++-.+..-.+.++..+.. ..+.. . ....+..|++.|+++++|.+.|.+.|||.
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 4578999999998877776666666666777765221 12211 1 11233468999999999999999999999
Q ss_pred CCCeEEEEEe
Q 004885 712 ETQVCRLKLQ 721 (725)
Q Consensus 712 ~tg~~v~~l~ 721 (725)
+|.+|+..++
T Consensus 183 ~t~e~vas~r 192 (405)
T KOG1273|consen 183 ETLECVASFR 192 (405)
T ss_pred chheeeeeee
Confidence 9999998876
No 136
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.2e-15 Score=163.03 Aligned_cols=193 Identities=17% Similarity=0.258 Sum_probs=160.8
Q ss_pred cccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecC
Q 004885 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (725)
Q Consensus 474 l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 553 (725)
+...+-.+++++.|+-|+. ++.+||.||.|.+|...+-. +.........++.+..
T Consensus 118 v~~aHYQ~ITcL~fs~dgs---------------~iiTgskDg~V~vW~l~~lv----------~a~~~~~~~p~~~f~~ 172 (476)
T KOG0646|consen 118 VLSAHYQSITCLKFSDDGS---------------HIITGSKDGAVLVWLLTDLV----------SADNDHSVKPLHIFSD 172 (476)
T ss_pred HHHhhccceeEEEEeCCCc---------------EEEecCCCccEEEEEEEeec----------ccccCCCccceeeecc
Confidence 4466777888888888776 99999999999999543332 1222335678889999
Q ss_pred CCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-
Q 004885 554 STSKVESCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD- 630 (725)
Q Consensus 554 H~~~V~~i~fSpd--g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~- 630 (725)
|+-+|+++...+. ..+|+|+|.|.++++||+..+..+.++. ....|.+|+.+|-.+.+++|+.+|.|.+.++..-.
T Consensus 173 HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~ 251 (476)
T KOG0646|consen 173 HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSG 251 (476)
T ss_pred CcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCc
Confidence 9999999999875 3489999999999999999999887775 36789999999999999999999999988875422
Q ss_pred --------------eeeEEEecCCC--CeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeEEEEEecC
Q 004885 631 --------------YSLRTFTGHST--TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPR 693 (725)
Q Consensus 631 --------------~~l~~~~~h~~--~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~-~~~~V~sv~fspd 693 (725)
..+..+.+|.+ .|+|++++-||. +|++|+.||.|+|||+.+..|++++. ..++|+.+.+.|-
T Consensus 252 ~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 252 QSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred ccccccccccccccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 13567788988 999999999988 88899999999999999999999988 4889999998664
No 137
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.67 E-value=3.9e-16 Score=163.50 Aligned_cols=163 Identities=21% Similarity=0.381 Sum_probs=137.4
Q ss_pred eEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-------CeEEEEeccCCCCeEEEEEcCC-CCEEEEEeC
Q 004885 547 EFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPS-LSRLATSSA 617 (725)
Q Consensus 547 ~~~~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~-------~~~i~~l~~H~~~V~~IafsPd-~~~Lasgs~ 617 (725)
..-.+.+|++.|.+++|+| +...||+||+|.+|.||.+.. .+++..|.+|...|.-|.|||. .+.|++++.
T Consensus 73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~ 152 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS 152 (472)
T ss_pred CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC
Confidence 3445679999999999999 667899999999999999854 2457789999999999999995 678899999
Q ss_pred CCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeEEEEEecCCC
Q 004885 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLG 695 (725)
Q Consensus 618 DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~ 695 (725)
|.+|.+||+.++. .+.++. |..-|.+++|+.+|. +||+.+.|..|||||.++++.+..-.. ......+.|-.++.
T Consensus 153 Dn~v~iWnv~tge-ali~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~ 229 (472)
T KOG0303|consen 153 DNTVSIWNVGTGE-ALITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK 229 (472)
T ss_pred CceEEEEeccCCc-eeeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc
Confidence 9999999999998 455555 999999999999998 788999999999999999999988754 33456677888877
Q ss_pred EEEEEEc----CCeEEEEECCC
Q 004885 696 RILAAAI----ENYISILDVET 713 (725)
Q Consensus 696 ~Lla~s~----Dg~V~IwDl~t 713 (725)
+++.+. +..|.+||-..
T Consensus 230 -i~tTGfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 230 -IFTTGFSRMSERQIALWDPNN 250 (472)
T ss_pred -eeeeccccccccceeccCccc
Confidence 555543 67899998654
No 138
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=5.8e-15 Score=163.66 Aligned_cols=218 Identities=14% Similarity=0.209 Sum_probs=168.6
Q ss_pred eeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC-CCeEE
Q 004885 482 KSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVES 560 (725)
Q Consensus 482 ~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~-~~V~~ 560 (725)
+..+-|.|.+..++|++.. .+.||.+-.|++|++|+...+ +-....+.++. ..|..
T Consensus 18 crf~d~~Ps~I~slA~s~k-----S~~lAvsRt~g~IEiwN~~~~------------------w~~~~vi~g~~drsIE~ 74 (691)
T KOG2048|consen 18 CRFVDYKPSEIVSLAYSHK-----SNQLAVSRTDGNIEIWNLSNN------------------WFLEPVIHGPEDRSIES 74 (691)
T ss_pred EEEEeeeccceEEEEEecc-----CCceeeeccCCcEEEEccCCC------------------ceeeEEEecCCCCceee
Confidence 3444555655555555332 346899999999999965443 22333444544 56999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee-EEEecC
Q 004885 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGH 639 (725)
Q Consensus 561 i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l-~~~~~h 639 (725)
++|+ ++..|++.+.+|+|..||+.+.+.+..+....+.|++++.+|..+.++.|+.||.+..+++..+.... +.+...
T Consensus 75 L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq 153 (691)
T KOG2048|consen 75 LAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQ 153 (691)
T ss_pred EEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccc
Confidence 9999 56678888999999999999999999999999999999999999999999999988888887665222 233344
Q ss_pred CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-----cCC----CeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004885 640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----CQS----GATQMRFQPRLGRILAAAIENYISILD 710 (725)
Q Consensus 640 ~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~-----~~~----~V~sv~fspdg~~Lla~s~Dg~V~IwD 710 (725)
++.|.+|+|+|++. -+++|+.||.|++||+..+..+.... ... -|.++.|-.+ ..|++|.+-|+|.+||
T Consensus 154 ~sRvLslsw~~~~~-~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd 231 (691)
T KOG2048|consen 154 KSRVLSLSWNPTGT-KIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWD 231 (691)
T ss_pred cceEEEEEecCCcc-EEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEc
Confidence 58899999999987 45699999999999999988776332 111 2788888765 6888998899999999
Q ss_pred CCCCeEEEEEeCCCC
Q 004885 711 VETQVCRLKLQVSHS 725 (725)
Q Consensus 711 l~tg~~v~~l~GH~s 725 (725)
...+..+.++..|.+
T Consensus 232 ~~~gTLiqS~~~h~a 246 (691)
T KOG2048|consen 232 SIFGTLIQSHSCHDA 246 (691)
T ss_pred ccCcchhhhhhhhhc
Confidence 999999988888753
No 139
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.9e-16 Score=184.09 Aligned_cols=222 Identities=18% Similarity=0.231 Sum_probs=171.1
Q ss_pred cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST 555 (725)
Q Consensus 476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~ 555 (725)
+.....-..++|.+.+.+. + -+++.|..||+|.+|+...- ..+.....+.+...|+
T Consensus 61 ~~s~~rF~kL~W~~~g~~~----------~-GlIaGG~edG~I~ly~p~~~-------------~~~~~~~~la~~~~h~ 116 (1049)
T KOG0307|consen 61 LQSSNRFNKLAWGSYGSHS----------H-GLIAGGLEDGNIVLYDPASI-------------IANASEEVLATKSKHT 116 (1049)
T ss_pred ccccccceeeeecccCCCc----------c-ceeeccccCCceEEecchhh-------------ccCcchHHHhhhcccC
Confidence 3344556778888877521 1 47899999999999944321 0223345566778899
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEec--cCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCe
Q 004885 556 SKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY 631 (725)
Q Consensus 556 ~~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~~~~~i~~l~--~H~~~V~~IafsPd-~~~Lasgs~DgtIrvWDl~~~~~ 631 (725)
+.|..+.|++... +||+|+.||.|.|||+...+.-.++. .-.+.|.+++|... ...|++++.+|++.|||++..+
T Consensus 117 G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~- 195 (1049)
T KOG0307|consen 117 GPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK- 195 (1049)
T ss_pred CceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC-
Confidence 9999999999654 99999999999999998754433332 13567999999874 5678899999999999999886
Q ss_pred eeEEEecCCC--CeEEEEEccCCCeEEEEEeCCC---cEEEEECCC-CeeEEEEec-CCCeEEEEEecCC-CEEEEEEcC
Q 004885 632 SLRTFTGHST--TVMSLDFHPSKEDLLCSCDNNS---EIRYWSINN-GSCAGVFKC-QSGATQMRFQPRL-GRILAAAIE 703 (725)
Q Consensus 632 ~l~~~~~h~~--~V~sl~fsP~g~~llaSgs~Dg---~I~IwDl~t-~~~v~~~~~-~~~V~sv~fspdg-~~Lla~s~D 703 (725)
.+..+..+.. .+..|.|+|++..-++++++|. .|.+||+|. ...+.++++ ..+|.+|.|++.+ .+|++++.|
T Consensus 196 pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD 275 (1049)
T KOG0307|consen 196 PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKD 275 (1049)
T ss_pred cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCC
Confidence 5666655544 4789999999887777776554 599999986 346666654 6789999999987 678888899
Q ss_pred CeEEEEECCCCeEEEEEeC
Q 004885 704 NYISILDVETQVCRLKLQV 722 (725)
Q Consensus 704 g~V~IwDl~tg~~v~~l~G 722 (725)
+.|.+|+.+|++.+..|..
T Consensus 276 ~~ii~wN~~tgEvl~~~p~ 294 (1049)
T KOG0307|consen 276 NRIICWNPNTGEVLGELPA 294 (1049)
T ss_pred CCeeEecCCCceEeeecCC
Confidence 9999999999999988864
No 140
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=5.1e-15 Score=157.86 Aligned_cols=208 Identities=15% Similarity=0.246 Sum_probs=166.4
Q ss_pred ccccccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEE
Q 004885 471 RPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL 550 (725)
Q Consensus 471 ~~~l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (725)
.....+.....++++.|+|... ++.+++.|+++++|... +..-..+..
T Consensus 205 DaNa~~ps~~~I~sv~FHp~~p---------------lllvaG~d~~lrifqvD-----------------Gk~N~~lqS 252 (514)
T KOG2055|consen 205 DANAAHPSHGGITSVQFHPTAP---------------LLLVAGLDGTLRIFQVD-----------------GKVNPKLQS 252 (514)
T ss_pred ccccCCcCcCCceEEEecCCCc---------------eEEEecCCCcEEEEEec-----------------CccChhhee
Confidence 3455555666788899998776 89999999999999442 222234455
Q ss_pred ecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEE--EeccCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004885 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKS--TLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDT 626 (725)
Q Consensus 551 l~~H~~~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~~~~~i~--~l~~H~-~~V~~IafsPd~~~Lasgs~DgtIrvWDl 626 (725)
+.--..+|.+++|.|+|. .+++++..+.+++||+.+.+... ...++. ..+..+.+++++.+|+..+..|.|.|...
T Consensus 253 ~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLha 332 (514)
T KOG2055|consen 253 IHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHA 332 (514)
T ss_pred eeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehh
Confidence 555667899999999999 99999999999999998866432 233443 35678889999999999999999999999
Q ss_pred CCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCC--eEEEEEecCCCEEEEEEcCC
Q 004885 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAIEN 704 (725)
Q Consensus 627 ~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~--V~sv~fspdg~~Lla~s~Dg 704 (725)
.++. .+..++ -.+.|..++|+.+++.++++ +.+|.|.+||++...|++.|...+. -+++|.++++.+|++|+..|
T Consensus 333 kT~e-li~s~K-ieG~v~~~~fsSdsk~l~~~-~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~G 409 (514)
T KOG2055|consen 333 KTKE-LITSFK-IEGVVSDFTFSSDSKELLAS-GGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSG 409 (514)
T ss_pred hhhh-hhheee-eccEEeeEEEecCCcEEEEE-cCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcc
Confidence 8887 566655 45789999999999866654 5588999999999999999987555 46778889999999999999
Q ss_pred eEEEEECCC
Q 004885 705 YISILDVET 713 (725)
Q Consensus 705 ~V~IwDl~t 713 (725)
.|.|||..+
T Consensus 410 iVNIYd~~s 418 (514)
T KOG2055|consen 410 IVNIYDGNS 418 (514)
T ss_pred eEEEeccch
Confidence 999999664
No 141
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.66 E-value=1.8e-15 Score=166.47 Aligned_cols=207 Identities=15% Similarity=0.222 Sum_probs=151.6
Q ss_pred CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004885 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (725)
Q Consensus 503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IW 582 (725)
.....+|+.+..||.|.+|+...-.. + ..-..+.....|...|.++.|-|....|++++.|.++++|
T Consensus 61 ~n~eHiLavadE~G~i~l~dt~~~~f------r-------~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~W 127 (720)
T KOG0321|consen 61 PNKEHILAVADEDGGIILFDTKSIVF------R-------LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPW 127 (720)
T ss_pred CCccceEEEecCCCceeeecchhhhc------c-------hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeee
Confidence 34556899999999999994422210 0 0001234556899999999999966689999999999999
Q ss_pred ECCCCeEEEE--eccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCe--------------------------ee
Q 004885 583 CTESFTVKST--LEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDY--------------------------SL 633 (725)
Q Consensus 583 dl~~~~~i~~--l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~--------------------------~l 633 (725)
|+++.+++.. +.+|.+.|.+++|+| |...|++|+.||.|.|||++-... .+
T Consensus 128 dvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~ 207 (720)
T KOG0321|consen 128 DVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRI 207 (720)
T ss_pred eeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccc
Confidence 9999988877 899999999999999 567889999999999999874320 01
Q ss_pred EEEecCCCCeEE---EEEccCCCeEEEEEeC-CCcEEEEECCCCeeEEEEe--------c----CCCeEEEEEecCCCEE
Q 004885 634 RTFTGHSTTVMS---LDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFK--------C----QSGATQMRFQPRLGRI 697 (725)
Q Consensus 634 ~~~~~h~~~V~s---l~fsP~g~~llaSgs~-Dg~I~IwDl~t~~~v~~~~--------~----~~~V~sv~fspdg~~L 697 (725)
+....+...|.+ +.+.-|.. .||+++. |+.|+|||++...+..... . ..++++++.+..|.+|
T Consensus 208 ~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L 286 (720)
T KOG0321|consen 208 RKWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYL 286 (720)
T ss_pred cccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeE
Confidence 112233334444 44455545 5667765 9999999999755443222 1 2457888888889999
Q ss_pred EEEEcCCeEEEEECCCC--eEEEEEeCC
Q 004885 698 LAAAIENYISILDVETQ--VCRLKLQVS 723 (725)
Q Consensus 698 la~s~Dg~V~IwDl~tg--~~v~~l~GH 723 (725)
++.+.|+.|++||+.+- .++..|.||
T Consensus 287 ~AsCtD~sIy~ynm~s~s~sP~~~~sg~ 314 (720)
T KOG0321|consen 287 FASCTDNSIYFYNMRSLSISPVAEFSGK 314 (720)
T ss_pred EEEecCCcEEEEeccccCcCchhhccCc
Confidence 99999999999999864 455555554
No 142
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=5.6e-16 Score=180.32 Aligned_cols=191 Identities=21% Similarity=0.393 Sum_probs=156.9
Q ss_pred cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECC
Q 004885 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTE 585 (725)
Q Consensus 507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpd-g~~LaSgs~Dg~V~IWdl~ 585 (725)
+++++|+.||.|.+|+......+ ++.. -....+.|.|++|+.. ...|++++.+|++.|||++
T Consensus 130 nlLASGa~~geI~iWDlnn~~tP-------------~~~~----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr 192 (1049)
T KOG0307|consen 130 NLLASGADDGEILIWDLNKPETP-------------FTPG----SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLR 192 (1049)
T ss_pred ceeeccCCCCcEEEeccCCcCCC-------------CCCC----CCCCcccceEeccchhhhHHhhccCCCCCceecccc
Confidence 58999999999999966553211 1111 1124567999999873 4578999999999999999
Q ss_pred CCeEEEEeccCCC--CeEEEEEcCC-CCEEEEEeCCC---eEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEE
Q 004885 586 SFTVKSTLEEHTQ--WITDVRFSPS-LSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (725)
Q Consensus 586 ~~~~i~~l~~H~~--~V~~IafsPd-~~~Lasgs~Dg---tIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSg 659 (725)
..+.+..+..|.+ .+..|+|||+ ...|++++.|. .|.+||++....+++++.+|...|.++.|++.+..++++|
T Consensus 193 ~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSs 272 (1049)
T KOG0307|consen 193 KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSS 272 (1049)
T ss_pred CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcc
Confidence 8888877776654 4778999997 45677776654 7999999998889999999999999999999998899999
Q ss_pred eCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCE-EEEEEcCCeEEEEECCCC
Q 004885 660 DNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGR-ILAAAIENYISILDVETQ 714 (725)
Q Consensus 660 s~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~-Lla~s~Dg~V~IwDl~tg 714 (725)
+.|+.|.+|+.++++.+..+.. ..++..+.|+|.... +++++.||.|.||.+.+.
T Consensus 273 gkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 273 GKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred cCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 9999999999999999999987 678999999998874 455566999999999765
No 143
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=5.7e-15 Score=151.23 Aligned_cols=229 Identities=16% Similarity=0.209 Sum_probs=163.8
Q ss_pred cccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCC-------------ccc------
Q 004885 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRD-------------RVG------ 534 (725)
Q Consensus 474 l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~-------------~~~------ 534 (725)
..-.++..++++.|+.||. .+++++.|+.|++|...+-..-.. ++.
T Consensus 81 ~LKgH~~~vt~~~FsSdGK---------------~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~ 145 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGK---------------KLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCK 145 (420)
T ss_pred hhhccCCceeeeEEcCCCc---------------eeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcc
Confidence 4456778899999999998 899999999999997655311000 000
Q ss_pred -cccccCCCceee--------------------eEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 004885 535 -RSAEVGKGFTFT--------------------EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL 593 (725)
Q Consensus 535 -~~~~~~~~~~~~--------------------~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l 593 (725)
-+.....+.++. ....-+-|...|-.+-....+++|++++.|.+|.+|+++ +..+..+
T Consensus 146 s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~i 224 (420)
T KOG2096|consen 146 SVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSI 224 (420)
T ss_pred eEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeee
Confidence 000000111111 111223455666667777788899999999999999998 8888888
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-------eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEE
Q 004885 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (725)
Q Consensus 594 ~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~-------~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~ 666 (725)
.......+..+.+|+|++|+++++.--|+||.+--.+ ..+..++||...|..++|+++.. -+++.+.||+++
T Consensus 225 dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkDG~wr 303 (420)
T KOG2096|consen 225 DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKDGKWR 303 (420)
T ss_pred ccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc-eeEEEecCCcEE
Confidence 7777778889999999999999999999999874221 23567889999999999999987 567999999999
Q ss_pred EEECCC-------CeeEEEEe---c--CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 004885 667 YWSINN-------GSCAGVFK---C--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 720 (725)
Q Consensus 667 IwDl~t-------~~~v~~~~---~--~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l 720 (725)
|||++- .+.+.+.. + .+....+..+|.|..| +.+....|++|..++|+..-++
T Consensus 304 iwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~l-A~s~gs~l~~~~se~g~~~~~~ 368 (420)
T KOG2096|consen 304 IWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSL-AVSFGSDLKVFASEDGKDYPEL 368 (420)
T ss_pred EeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEE-EeecCCceEEEEcccCccchhH
Confidence 999862 12222221 1 3345589999997655 5566678999999988654443
No 144
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=4.4e-15 Score=152.05 Aligned_cols=162 Identities=19% Similarity=0.319 Sum_probs=127.0
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe------------------------------------EEE
Q 004885 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT------------------------------------VKS 591 (725)
Q Consensus 548 ~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~------------------------------------~i~ 591 (725)
+..+++|.+.|+|++|+.||++|++++.|++|+||++++.. .++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 45789999999999999999999999999999999986421 011
Q ss_pred Ee-----------------------ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEE
Q 004885 592 TL-----------------------EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648 (725)
Q Consensus 592 ~l-----------------------~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~f 648 (725)
.+ +.|...|..+-+.-++.+|++++.|..|.+||++ +. .+..+......-+..+.
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq-~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ-LLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc-eeeeeccccccccceee
Confidence 11 1134455566666677899999999999999998 55 57777766667788899
Q ss_pred ccCCCeEEEEEeCCCcEEEEECC---CCe-----eEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885 649 HPSKEDLLCSCDNNSEIRYWSIN---NGS-----CAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVE 712 (725)
Q Consensus 649 sP~g~~llaSgs~Dg~I~IwDl~---t~~-----~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~ 712 (725)
+|+|+ ++++++-.-.|+||.+- .|+ .+..+++ ...|+.++|+++...+++++.||+++|||..
T Consensus 237 SP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 237 SPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred CCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 99999 67777777889999863 222 2334443 6779999999999999999999999999975
No 145
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.64 E-value=1.7e-14 Score=152.00 Aligned_cols=131 Identities=26% Similarity=0.446 Sum_probs=102.9
Q ss_pred EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC--
Q 004885 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-- 585 (725)
Q Consensus 508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~-- 585 (725)
++++|+.|..|++|......+ ......+.....+..|...|++|.|+|+|.+||+|+.+|.|.+|-..
T Consensus 28 ~laT~G~D~~iriW~v~r~~~----------~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~ 97 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEP----------GGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDV 97 (434)
T ss_pred ceecccCccceeeeeeeecCC----------CCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCc
Confidence 899999999999995544321 11225677888899999999999999999999999999999999654
Q ss_pred ------C--------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEc
Q 004885 586 ------S--------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649 (725)
Q Consensus 586 ------~--------~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fs 649 (725)
+ +....++.+|...|++++|+|++.++++++.|.++++||+..+. .+..+.+|...|..++|+
T Consensus 98 ~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~-l~~~~~dh~~yvqgvawD 174 (434)
T KOG1009|consen 98 RIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ-LLAILDDHEHYVQGVAWD 174 (434)
T ss_pred CCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce-eEeeccccccccceeecc
Confidence 2 34456778899999999999999999999999999999998665 333333343333333333
No 146
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.64 E-value=6.6e-15 Score=151.46 Aligned_cols=188 Identities=15% Similarity=0.260 Sum_probs=141.2
Q ss_pred CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEC
Q 004885 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCT 584 (725)
Q Consensus 506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg-~~LaSgs~Dg~V~IWdl 584 (725)
+.|++.|+.-|.|++.+. ........+.+|...|+.|.|+|+. ++|++||.|.+|++||+
T Consensus 105 ~p~la~~G~~GvIrVid~-------------------~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI 165 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDV-------------------VSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNI 165 (385)
T ss_pred CeeEEeecceeEEEEEec-------------------chhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEec
Confidence 446666666677777632 2224556788999999999999965 59999999999999999
Q ss_pred CCCeEEEEe---ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe--------------------------eeE-
Q 004885 585 ESFTVKSTL---EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--------------------------SLR- 634 (725)
Q Consensus 585 ~~~~~i~~l---~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~--------------------------~l~- 634 (725)
.+..++.+| .+|...|.+|+|++++++|++|+.|.+|++|++..+.. +..
T Consensus 166 ~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fs 245 (385)
T KOG1034|consen 166 QTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFS 245 (385)
T ss_pred cCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccc
Confidence 999999887 67999999999999999999999999999999872210 000
Q ss_pred EEecCC------------------------------------------------------CCeEEEE--EccCCCeEEEE
Q 004885 635 TFTGHS------------------------------------------------------TTVMSLD--FHPSKEDLLCS 658 (725)
Q Consensus 635 ~~~~h~------------------------------------------------------~~V~sl~--fsP~g~~llaS 658 (725)
+-.-|. ..|+-|. |+|.++ +||.
T Consensus 246 t~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~la~ 324 (385)
T KOG1034|consen 246 TTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-MLAL 324 (385)
T ss_pred ccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-HHhh
Confidence 000011 1233332 334444 6778
Q ss_pred EeCCCcEEEEECCCCeeE--EEEec---CCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004885 659 CDNNSEIRYWSINNGSCA--GVFKC---QSGATQMRFQPRLGRILAAAIENYISILDVET 713 (725)
Q Consensus 659 gs~Dg~I~IwDl~t~~~v--~~~~~---~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~t 713 (725)
|...|.|.+||+++.... .++.+ ...|...+|+.|+..|++...|++|.-||..+
T Consensus 325 gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv~ 384 (385)
T KOG1034|consen 325 GNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRVS 384 (385)
T ss_pred ccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEeec
Confidence 888999999999876542 22222 56699999999999999999999999999653
No 147
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=2.8e-14 Score=162.72 Aligned_cols=180 Identities=17% Similarity=0.278 Sum_probs=141.0
Q ss_pred CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004885 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (725)
Q Consensus 503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IW 582 (725)
.+.+.+++.||.|-.|++....+ ......+++|.++|.++.|+|.+++||+.+-||.|+||
T Consensus 105 ~g~g~~iaagsdD~~vK~~~~~D-------------------~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 105 SGSGKMIAAGSDDTAVKLLNLDD-------------------SSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred ecCCcEEEeecCceeEEEEeccc-------------------cchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 33445999999999999994433 35667889999999999999999999999999999999
Q ss_pred ECCCCeEEEEecc--------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEe--cCCCCeEEEEEccCC
Q 004885 583 CTESFTVKSTLEE--------HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT--GHSTTVMSLDFHPSK 652 (725)
Q Consensus 583 dl~~~~~i~~l~~--------H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~--~h~~~V~sl~fsP~g 652 (725)
|+.++.+..++.+ ....++.++|+|++..|+..+.|++|++|+..+.. ....+. .+...+.++.|+|.|
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we-~~f~Lr~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE-LQFKLRDKLSSSKFSDLQWSPNG 244 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCce-eheeecccccccceEEEEEcCCC
Confidence 9998887766543 14567788999998888888899999999998876 333333 234458999999998
Q ss_pred CeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeE
Q 004885 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYI 706 (725)
Q Consensus 653 ~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V 706 (725)
. +||+++.||.|.|||+++- .+.+....|++++|.|++..+-.....|..
T Consensus 245 ~-YiAAs~~~g~I~vWnv~t~---~~~~~~~~Vc~~aw~p~~n~it~~~~~g~~ 294 (933)
T KOG1274|consen 245 K-YIAASTLDGQILVWNVDTH---ERHEFKRAVCCEAWKPNANAITLITALGTL 294 (933)
T ss_pred c-EEeeeccCCcEEEEecccc---hhccccceeEEEecCCCCCeeEEEeecccc
Confidence 8 6678888999999999982 222224779999999997765444444433
No 148
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=2.4e-14 Score=146.54 Aligned_cols=154 Identities=18% Similarity=0.277 Sum_probs=133.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004885 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l 633 (725)
..+.|.++.|+|.+..|++++.||++++||+........+ .|..++.+++|.+ ...+++|+.||.|+++|+.++. .
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~--~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN--E 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCc--c
Confidence 3567999999998889999999999999999887555445 4899999999997 4679999999999999999876 5
Q ss_pred EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004885 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 713 (725)
Q Consensus 634 ~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~t 713 (725)
..+-.|..+|.||.+++... .+++|+.|++|++||.++..++..+.....|.++... +..|++|+.|..|.+||+++
T Consensus 88 ~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred eeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEEEccc
Confidence 66677999999999998755 6779999999999999987788888777789888876 45899999999999999987
Q ss_pred C
Q 004885 714 Q 714 (725)
Q Consensus 714 g 714 (725)
-
T Consensus 165 ~ 165 (323)
T KOG1036|consen 165 L 165 (323)
T ss_pred c
Confidence 5
No 149
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.60 E-value=1e-13 Score=149.12 Aligned_cols=200 Identities=21% Similarity=0.236 Sum_probs=153.8
Q ss_pred CCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeE
Q 004885 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (725)
Q Consensus 480 ~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~ 559 (725)
.-+.++.|.++|. +.+|..+|+|.+|.. ...+..+...+|.+.|.
T Consensus 247 k~Vl~v~F~engd----------------viTgDS~G~i~Iw~~-------------------~~~~~~k~~~aH~ggv~ 291 (626)
T KOG2106|consen 247 KFVLCVTFLENGD----------------VITGDSGGNILIWSK-------------------GTNRISKQVHAHDGGVF 291 (626)
T ss_pred eEEEEEEEcCCCC----------------EEeecCCceEEEEeC-------------------CCceEEeEeeecCCceE
Confidence 3456677777665 678889999999922 22234444459999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCe-----------EEE-----------------------------EeccCCCC
Q 004885 560 SCHFSPDGKLLATGGHDKKAVLWCTESFT-----------VKS-----------------------------TLEEHTQW 599 (725)
Q Consensus 560 ~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~-----------~i~-----------------------------~l~~H~~~ 599 (725)
+++.-.+|.+|- |+.|.+|..||-.-.+ .++ +..+|...
T Consensus 292 ~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~de 370 (626)
T KOG2106|consen 292 SLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDE 370 (626)
T ss_pred EEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccc
Confidence 999999998555 9999999999832000 000 11357788
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEE
Q 004885 600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679 (725)
Q Consensus 600 V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~ 679 (725)
...++.+|+...++||+.|+.+++|+ + .+ +..-+-...++.|++|+|.| .++.|...|...+.|.++...+...
T Consensus 371 lwgla~hps~~q~~T~gqdk~v~lW~-~-~k--~~wt~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~ 444 (626)
T KOG2106|consen 371 LWGLATHPSKNQLLTCGQDKHVRLWN-D-HK--LEWTKIIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIH 444 (626)
T ss_pred eeeEEcCCChhheeeccCcceEEEcc-C-Cc--eeEEEEecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEE
Confidence 89999999999999999999999999 2 22 22222334789999999998 6788999999999999997777766
Q ss_pred ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEEe
Q 004885 680 KCQSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQ 721 (725)
Q Consensus 680 ~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg-~~v~~l~ 721 (725)
.....++.|+|+|+|.+|++++.|+.|+||.+... ..+..+.
T Consensus 445 ~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~ 487 (626)
T KOG2106|consen 445 TDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG 487 (626)
T ss_pred ecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEee
Confidence 66788999999999999999999999999998654 4443333
No 150
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.60 E-value=2.7e-13 Score=144.68 Aligned_cols=177 Identities=30% Similarity=0.451 Sum_probs=148.5
Q ss_pred eeeEEEecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEE
Q 004885 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVR 622 (725)
Q Consensus 545 ~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~-Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~-~Lasgs~DgtIr 622 (725)
......+..|...|.+++|+|+++++++++. |+.+++|++.....+..+.+|...|.+++|+|++. .+++++.|+.|+
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 224 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224 (466)
T ss_pred CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence 4566778899999999999999998888886 99999999999888999999999999999999887 555558999999
Q ss_pred EEECCCCCeeeE-EEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee-EEEE-ecCCCeEEEEEecCCCEEEE
Q 004885 623 VWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVF-KCQSGATQMRFQPRLGRILA 699 (725)
Q Consensus 623 vWDl~~~~~~l~-~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~-v~~~-~~~~~V~sv~fspdg~~Lla 699 (725)
+||...+. .+. .+.+|...+ ...|+|++. ++++++.|+.+++||++.... +..+ .+...+.++.|.|++..+++
T Consensus 225 ~wd~~~~~-~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 225 LWDLSTGK-LLRSTLSGHSDSV-VSSFSPDGS-LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS 301 (466)
T ss_pred EEECCCCc-EEeeecCCCCcce-eEeECCCCC-EEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE
Confidence 99998666 455 688888775 448999984 666899999999999987654 4444 33678999999998888888
Q ss_pred EEcCCeEEEEECCCCeEEEEEe--CCC
Q 004885 700 AAIENYISILDVETQVCRLKLQ--VSH 724 (725)
Q Consensus 700 ~s~Dg~V~IwDl~tg~~v~~l~--GH~ 724 (725)
++.|+.+.+||+++........ +|.
T Consensus 302 ~~~d~~~~~~~~~~~~~~~~~~~~~~~ 328 (466)
T COG2319 302 GSSDGTVRLWDLETGKLLSSLTLKGHE 328 (466)
T ss_pred eeCCCcEEEEEcCCCceEEEeeecccC
Confidence 8889889999999987777665 554
No 151
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.60 E-value=2.5e-14 Score=161.52 Aligned_cols=203 Identities=14% Similarity=0.168 Sum_probs=164.4
Q ss_pred CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004885 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (725)
Q Consensus 503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IW 582 (725)
..-++++++.-.+..++.|......-++..+... .++.....++||+.+++|++.+.|+..|+|-+|
T Consensus 409 ~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~-------------~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~f 475 (910)
T KOG1539|consen 409 KEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPK-------------RFKKDDINATAVCVSFCGNFVFIGYSKGTIDRF 475 (910)
T ss_pred hhhcceeEEecCcceEEEEeccCcccccEEecCc-------------cccccCcceEEEEEeccCceEEEeccCCeEEEE
Confidence 4445566666667778888665554333222211 111234568999999999999999999999999
Q ss_pred ECCCCeEEEEe---ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEE
Q 004885 583 CTESFTVKSTL---EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (725)
Q Consensus 583 dl~~~~~i~~l---~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSg 659 (725)
++.++-....+ ..|.++|++++.+--++.+++++.+|.+++||..+.. .+..+. -...+.++..+.... +++.+
T Consensus 476 NmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~-l~~~l~-l~~~~~~iv~hr~s~-l~a~~ 552 (910)
T KOG1539|consen 476 NMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV-LKKSLR-LGSSITGIVYHRVSD-LLAIA 552 (910)
T ss_pred EcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc-eeeeec-cCCCcceeeeeehhh-hhhhh
Confidence 99999888888 5899999999999888999999999999999999876 444443 335678888888766 77777
Q ss_pred eCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 660 DNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 660 s~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
.+|-.|+++|+.+.+.++.|.+ ...|++++|+|||++|++++.|++|++||+-++.++-.|.
T Consensus 553 ~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~ 615 (910)
T KOG1539|consen 553 LDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL 615 (910)
T ss_pred cCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe
Confidence 8899999999999999999985 7889999999999999999999999999999998887653
No 152
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.58 E-value=2.5e-14 Score=158.79 Aligned_cols=210 Identities=20% Similarity=0.302 Sum_probs=163.3
Q ss_pred ccccccccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCC-----cEEEecCCCCCCCCCccccccccCCCc
Q 004885 469 ISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDD-----NVESFLSPDDADPRDRVGRSAEVGKGF 543 (725)
Q Consensus 469 ~s~~~l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~-----~V~vw~s~~~~~~~~~~~~~~~~~~~~ 543 (725)
+++....+.++..+.++..+|++. ++++++... .|++| ...
T Consensus 515 wPEv~KLYGHGyEv~~l~~s~~gn---------------liASaCKS~~~ehAvI~lw-------------------~t~ 560 (764)
T KOG1063|consen 515 WPEVHKLYGHGYEVYALAISPTGN---------------LIASACKSSLKEHAVIRLW-------------------NTA 560 (764)
T ss_pred chhhHHhccCceeEEEEEecCCCC---------------EEeehhhhCCccceEEEEE-------------------ecc
Confidence 445567788999999999999887 777766543 46777 455
Q ss_pred eeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 004885 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (725)
Q Consensus 544 ~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~----~~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dg 619 (725)
.+..+..+.+|.-.|+-++|||||++|+++|.|.++.+|..... ......+.|+.-|.++.|+|++.+|+|++.|+
T Consensus 561 ~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK 640 (764)
T KOG1063|consen 561 NWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDK 640 (764)
T ss_pred chhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCc
Confidence 66777789999999999999999999999999999999987432 12234688999999999999999999999999
Q ss_pred eEEEEECCCC--CeeeE-EEecCCCCeEEEEEccC----CCeEEEEEeCCCcEEEEECCC-------CeeEE------EE
Q 004885 620 TVRVWDTENP--DYSLR-TFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSINN-------GSCAG------VF 679 (725)
Q Consensus 620 tIrvWDl~~~--~~~l~-~~~~h~~~V~sl~fsP~----g~~llaSgs~Dg~I~IwDl~t-------~~~v~------~~ 679 (725)
+|+||..... .+..+ ....+...|+.++|.|. ..++++.|-..|.|.+|.... +.... .+
T Consensus 641 ~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~ 720 (764)
T KOG1063|consen 641 KVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATI 720 (764)
T ss_pred eEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeecccccccc
Confidence 9999998876 32222 44567789999999874 334788899999999998651 11110 11
Q ss_pred ecCCCeEEEEEecCC----------CEEEEEEcCCeEEEEECC
Q 004885 680 KCQSGATQMRFQPRL----------GRILAAAIENYISILDVE 712 (725)
Q Consensus 680 ~~~~~V~sv~fspdg----------~~Lla~s~Dg~V~IwDl~ 712 (725)
.+...|+.++|.|.. ..|++|+.|..++|+++.
T Consensus 721 ~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 721 GPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred ChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 124568999999752 246888999999999874
No 153
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=3.7e-14 Score=146.75 Aligned_cols=197 Identities=16% Similarity=0.202 Sum_probs=155.1
Q ss_pred CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEE
Q 004885 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWC 583 (725)
Q Consensus 506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp--dg~~LaSgs~Dg~V~IWd 583 (725)
...++++-..+.|++|+. .+...+..+++|...+..++|.. ....+.+|+.||+|++||
T Consensus 40 e~~vav~lSngsv~lyd~-------------------~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD 100 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDK-------------------GTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWD 100 (376)
T ss_pred ceeEEEEecCCeEEEEec-------------------cchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEE
Confidence 356788888899999932 23356667788888899999976 356899999999999999
Q ss_pred CCCCeE--EEEeccCC-CCeEEEEEcCCCCEEEEEeC----CCeEEEEECCCCCeeeE-EEecCCCCeEEEEEccCCCeE
Q 004885 584 TESFTV--KSTLEEHT-QWITDVRFSPSLSRLATSSA----DRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDL 655 (725)
Q Consensus 584 l~~~~~--i~~l~~H~-~~V~~IafsPd~~~Lasgs~----DgtIrvWDl~~~~~~l~-~~~~h~~~V~sl~fsP~g~~l 655 (725)
++.... ...+..|. .+..|++...++..+++|.. |-.|.+||++.....++ .+..|...|++|+|+|..+.+
T Consensus 101 ~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnl 180 (376)
T KOG1188|consen 101 IRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNL 180 (376)
T ss_pred eecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCe
Confidence 987543 33445565 56777777767788888753 67899999998875444 446799999999999999999
Q ss_pred EEEEeCCCcEEEEECCCC----eeEEEEecCCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 656 LCSCDNNSEIRYWSINNG----SCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 656 laSgs~Dg~I~IwDl~t~----~~v~~~~~~~~V~sv~fspdg-~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
|++|+.||-|.|||++.. .++.++.+...|.++.|..++ +.|.+-+...+..+|+++.+.++..++
T Consensus 181 LlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 181 LLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred EEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 999999999999999754 345566667789999999875 357788889999999999987665543
No 154
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.57 E-value=2.6e-14 Score=156.59 Aligned_cols=157 Identities=20% Similarity=0.353 Sum_probs=131.9
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------eEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEE
Q 004885 555 TSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD 625 (725)
Q Consensus 555 ~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~-------~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWD 625 (725)
...|++++|.| |...||+++.||.|++|.+..+ ++..+++.|...|+++.||| -.+.|+++++|.+|++||
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 34599999999 7789999999999999998642 45677889999999999999 577899999999999999
Q ss_pred CCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe-eEEEEec--CCCeEEEEEecCCCEEEEEEc
Q 004885 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKC--QSGATQMRFQPRLGRILAAAI 702 (725)
Q Consensus 626 l~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~-~v~~~~~--~~~V~sv~fspdg~~Lla~s~ 702 (725)
+.+.. ....+.+|.+.|.+++|+|+|+ .+++.+.||+|+||..+.+. .+..-++ ...-..|.|.-||+++++.+.
T Consensus 707 l~~~~-~~~~l~gHtdqIf~~AWSpdGr-~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gf 784 (1012)
T KOG1445|consen 707 LANAK-LYSRLVGHTDQIFGIAWSPDGR-RIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGF 784 (1012)
T ss_pred hhhhh-hhheeccCcCceeEEEECCCCc-ceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecc
Confidence 99988 5778899999999999999998 77899999999999998653 3333222 344677889999999998887
Q ss_pred C----CeEEEEECCC
Q 004885 703 E----NYISILDVET 713 (725)
Q Consensus 703 D----g~V~IwDl~t 713 (725)
| ..|.+||..+
T Consensus 785 dk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 785 DKSSERQVQMYDAQT 799 (1012)
T ss_pred cccchhhhhhhhhhh
Confidence 5 4688888765
No 155
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.57 E-value=8.7e-14 Score=141.10 Aligned_cols=202 Identities=19% Similarity=0.327 Sum_probs=153.2
Q ss_pred CeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEE
Q 004885 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560 (725)
Q Consensus 481 ~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~ 560 (725)
.+.++.|.|++. -+++- .|.+|.+|...+.... ...+.. ..-.+|....++
T Consensus 125 ~i~cvew~Pns~---------------klasm-~dn~i~l~~l~ess~~---vaev~s----------s~s~e~~~~fts 175 (370)
T KOG1007|consen 125 KINCVEWEPNSD---------------KLASM-DDNNIVLWSLDESSKI---VAEVLS----------SESAEMRHSFTS 175 (370)
T ss_pred ceeeEEEcCCCC---------------eeEEe-ccCceEEEEcccCcch---heeecc----------cccccccceecc
Confidence 678999999776 22322 3788999966554321 111100 001125666888
Q ss_pred EEEcC--CCCEEEEEeCCCcEEEEECCCCeEEEEe-ccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeeEEE
Q 004885 561 CHFSP--DGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTF 636 (725)
Q Consensus 561 i~fSp--dg~~LaSgs~Dg~V~IWdl~~~~~i~~l-~~H~~~V~~IafsPd~~-~Lasgs~DgtIrvWDl~~~~~~l~~~ 636 (725)
-+|+| +++.+++.+ |+++..||+++.++...+ ..|...|.+++|.|+.. +|+||+.||.|+|||.+..+.++..+
T Consensus 176 g~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el 254 (370)
T KOG1007|consen 176 GAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL 254 (370)
T ss_pred cccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc
Confidence 99999 788888875 889999999987665554 57888999999999854 67899999999999999999899999
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe-----------------------------eEEEEe-cCCCeE
Q 004885 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-----------------------------CAGVFK-CQSGAT 686 (725)
Q Consensus 637 ~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~-----------------------------~v~~~~-~~~~V~ 686 (725)
.+|.-.|++|.|+|....++.+++.|..|.+|....-. .+.++. +...|+
T Consensus 255 ~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY 334 (370)
T KOG1007|consen 255 PGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVY 334 (370)
T ss_pred CCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceE
Confidence 99999999999999999899999999999999763211 111222 356799
Q ss_pred EEEEecCCCEEEEE-EcCCeEEEEECC
Q 004885 687 QMRFQPRLGRILAA-AIENYISILDVE 712 (725)
Q Consensus 687 sv~fspdg~~Lla~-s~Dg~V~IwDl~ 712 (725)
+++|+....++++. +.||.|.|=.+.
T Consensus 335 ~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 335 ALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred EEeeccCCCeeEEEeccCceEEeecCC
Confidence 99999888887766 669999886654
No 156
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.57 E-value=2.1e-14 Score=157.18 Aligned_cols=196 Identities=15% Similarity=0.191 Sum_probs=146.5
Q ss_pred cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 004885 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 585 (725)
Q Consensus 507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~ 585 (725)
.-|++++.|+.|++|....+.-. .........+.+|..+|+++.|+| -.+.|+++++|-+|++||+.
T Consensus 641 ~rLAVa~ddg~i~lWr~~a~gl~------------e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 641 ERLAVATDDGQINLWRLTANGLP------------ENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred HHeeecccCceEEEEEeccCCCC------------cccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 35788899999999966554311 122345567889999999999999 45689999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCC-CCeEEEEEccCCCeEEEEEeC---
Q 004885 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDN--- 661 (725)
Q Consensus 586 ~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~-~~V~sl~fsP~g~~llaSgs~--- 661 (725)
+.+....|.+|.+.|.+++|+|+|+.+++.+.||+|+||..+....++..-.+-. ..-..|.|.-+|++++|+|-+
T Consensus 709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~S 788 (1012)
T KOG1445|consen 709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSS 788 (1012)
T ss_pred hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccc
Confidence 9999999999999999999999999999999999999999998775555544322 334667888899988877752
Q ss_pred CCcEEEEECCCC--eeEEEEec--CCCeEEEEEecCCCEE-EEEEcCCeEEEEECCCC
Q 004885 662 NSEIRYWSINNG--SCAGVFKC--QSGATQMRFQPRLGRI-LAAAIENYISILDVETQ 714 (725)
Q Consensus 662 Dg~I~IwDl~t~--~~v~~~~~--~~~V~sv~fspdg~~L-la~s~Dg~V~IwDl~tg 714 (725)
...|.+||..+- ..+.+... ...+.--.+++|...| ++|-.|..|.+|.+-..
T Consensus 789 eRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 789 ERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred hhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCC
Confidence 345888887653 33333322 2223333456666654 45556899999987543
No 157
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=2.6e-13 Score=134.84 Aligned_cols=204 Identities=12% Similarity=0.121 Sum_probs=145.3
Q ss_pred CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004885 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (725)
Q Consensus 503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IW 582 (725)
.+..+|+++|..+|.|-++....-..... +......+....+|.++|+.++|. ..+|++|+ ||.|+-|
T Consensus 19 sp~~~~l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw 86 (325)
T KOG0649|consen 19 SPSKQYLFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGW 86 (325)
T ss_pred CCcceEEEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEe
Confidence 34456999999999999984433211110 111123445568999999999997 56777776 6999999
Q ss_pred ECCCCeE------EEE--eccCC-----CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEc
Q 004885 583 CTESFTV------KST--LEEHT-----QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649 (725)
Q Consensus 583 dl~~~~~------i~~--l~~H~-----~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fs 649 (725)
..+.... +.. ..-|. -.|+++-..|...-+++++.|+.+..||++++. ..+++++|+..|.++.-.
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~-i~r~~rGHtDYvH~vv~R 165 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR-IQREYRGHTDYVHSVVGR 165 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE-EEEEEcCCcceeeeeeec
Confidence 7654221 111 11122 358899999987777777799999999999998 789999999999999984
Q ss_pred cCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-----------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE
Q 004885 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL 718 (725)
Q Consensus 650 P~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-----------~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~ 718 (725)
..... +.+|+.||++||||.++++++..++. ...|-+++.+.| ++ +|+....+.+|.+++.+++.
T Consensus 166 ~~~~q-ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed--Wl-vCGgGp~lslwhLrsse~t~ 241 (325)
T KOG0649|consen 166 NANGQ-ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED--WL-VCGGGPKLSLWHLRSSESTC 241 (325)
T ss_pred ccCcc-eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc--eE-EecCCCceeEEeccCCCceE
Confidence 44443 45999999999999999999988763 123455555443 54 55566789999999886555
Q ss_pred EE--eCC
Q 004885 719 KL--QVS 723 (725)
Q Consensus 719 ~l--~GH 723 (725)
.| ++|
T Consensus 242 vfpipa~ 248 (325)
T KOG0649|consen 242 VFPIPAR 248 (325)
T ss_pred EEecccc
Confidence 54 454
No 158
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.56 E-value=8.1e-14 Score=141.32 Aligned_cols=170 Identities=21% Similarity=0.372 Sum_probs=135.3
Q ss_pred CceeeeEEEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-EEEe-----ccCCCCeEEEEEcC--CCCEE
Q 004885 542 GFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTL-----EEHTQWITDVRFSP--SLSRL 612 (725)
Q Consensus 542 ~~~~~~~~~l~-~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~-i~~l-----~~H~~~V~~IafsP--d~~~L 612 (725)
..+++.+..+. .+-+.|.|+.|.|++..|++-. |..|.+|++..+.. +..+ .+|....++-+|+| ++..+
T Consensus 109 ~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv 187 (370)
T KOG1007|consen 109 SSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQV 187 (370)
T ss_pred cchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceE
Confidence 34555666665 5667999999999999998876 88999999987654 3332 23566788889999 57777
Q ss_pred EEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC-CeeEEEEec-CCCeEEEEE
Q 004885 613 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKC-QSGATQMRF 690 (725)
Q Consensus 613 asgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t-~~~v~~~~~-~~~V~sv~f 690 (725)
++.+ |+++..||+++.......-..|...|..++|+|+..++|++|++||.|+|||.+. ..++..+.. ...|.+|+|
T Consensus 188 ~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRf 266 (370)
T KOG1007|consen 188 ATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRF 266 (370)
T ss_pred EEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEe
Confidence 7664 8999999999877444555678888999999999999999999999999999986 445666654 567999999
Q ss_pred ecCCC-EEEEEEcCCeEEEEECCC
Q 004885 691 QPRLG-RILAAAIENYISILDVET 713 (725)
Q Consensus 691 spdg~-~Lla~s~Dg~V~IwDl~t 713 (725)
+|... .|+++++|..|.+|...+
T Consensus 267 n~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 267 NPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred cCccceEEEecCCCceeEEEeccc
Confidence 99654 577888899999998754
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.56 E-value=2.9e-14 Score=152.93 Aligned_cols=164 Identities=18% Similarity=0.263 Sum_probs=137.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEE
Q 004885 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~ 636 (725)
.-+|++......++++|+..++|+|||++...+.+.+++|...|++|.+...+.+|++++..|.|.|..+.++. ....|
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~-~tt~f 159 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQ-KTTTF 159 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCc-cccce
Confidence 34555555555899999999999999999877888899999999999999999999999999999999999877 34455
Q ss_pred ecC-CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe--cCCCeEEEEEecCCCE-EEEEEcCCeEEEEECC
Q 004885 637 TGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGR-ILAAAIENYISILDVE 712 (725)
Q Consensus 637 ~~h-~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~--~~~~V~sv~fspdg~~-Lla~s~Dg~V~IwDl~ 712 (725)
... ...|.-+.|+|..+.+|.+++++|.|.+||+....++..+. |..+...|||+|.... |++.+.|..|.+||.+
T Consensus 160 ~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 160 TIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred ecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence 433 34567899999999999999999999999999887777665 3678899999998775 5566889999999999
Q ss_pred CCeEEEEEe
Q 004885 713 TQVCRLKLQ 721 (725)
Q Consensus 713 tg~~v~~l~ 721 (725)
..+...+|.
T Consensus 240 s~~s~~~l~ 248 (673)
T KOG4378|consen 240 SQASTDRLT 248 (673)
T ss_pred cccccceee
Confidence 876655543
No 160
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.56 E-value=5.4e-14 Score=150.09 Aligned_cols=217 Identities=19% Similarity=0.170 Sum_probs=161.5
Q ss_pred cccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecC
Q 004885 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (725)
Q Consensus 474 l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 553 (725)
+.+.++..++.+.|+|... .-+.+.|.||+|++-+... ..++++..++.
T Consensus 229 ~f~~hs~~Vs~l~F~P~n~--------------s~i~ssSyDGtiR~~D~~~-----------------~i~e~v~s~~~ 277 (498)
T KOG4328|consen 229 LFTPHSGPVSGLKFSPANT--------------SQIYSSSYDGTIRLQDFEG-----------------NISEEVLSLDT 277 (498)
T ss_pred EeccCCccccceEecCCCh--------------hheeeeccCceeeeeeecc-----------------hhhHHHhhcCc
Confidence 4455666677777777554 3467788999999874322 22333444434
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-EEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCC-
Q 004885 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD- 630 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~-i~~l~~H~~~V~~IafsPd-~~~Lasgs~DgtIrvWDl~~~~- 630 (725)
....+..+.|+.+...++.+..-|.+.+||+++... ...+.-|...|+.|+++|- ..+|+|++.|++++|||++.-.
T Consensus 278 d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~ 357 (498)
T KOG4328|consen 278 DNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRG 357 (498)
T ss_pred cceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcC
Confidence 445578889988888888888778999999988544 6677789999999999995 5678999999999999998632
Q ss_pred -e-eeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC----CCeeEEEEec---C-C--CeEEEEEecCCCEEE
Q 004885 631 -Y-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN----NGSCAGVFKC---Q-S--GATQMRFQPRLGRIL 698 (725)
Q Consensus 631 -~-~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~----t~~~v~~~~~---~-~--~V~sv~fspdg~~Ll 698 (725)
. ++.....|...|.++.|+|.+..+ ++.+.|..|+|||.. .-....++.| . . ......|.|+..+++
T Consensus 358 K~sp~lst~~HrrsV~sAyFSPs~gtl-~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~ 436 (498)
T KOG4328|consen 358 KASPFLSTLPHRRSVNSAYFSPSGGTL-LTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIV 436 (498)
T ss_pred CCCcceecccccceeeeeEEcCCCCce-EeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEE
Confidence 1 234556799999999999999875 466669999999983 3344455554 1 1 245568999988888
Q ss_pred EEEcCCeEEEEECCCCeEEEEEeC
Q 004885 699 AAAIENYISILDVETQVCRLKLQV 722 (725)
Q Consensus 699 a~s~Dg~V~IwDl~tg~~v~~l~G 722 (725)
++..-..|-|||-..++.++.|.+
T Consensus 437 vg~~~r~IDv~~~~~~q~v~el~~ 460 (498)
T KOG4328|consen 437 VGRYPRPIDVFDGNGGQMVCELHD 460 (498)
T ss_pred EeccCcceeEEcCCCCEEeeeccC
Confidence 888888899999999998877643
No 161
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.56 E-value=5e-14 Score=155.19 Aligned_cols=200 Identities=21% Similarity=0.256 Sum_probs=141.5
Q ss_pred CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEC
Q 004885 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCT 584 (725)
Q Consensus 506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl 584 (725)
+..|++.+-|.++++|+.... .+.-...+.+|.+.|.+++|.|+.. .|++|+.||.|.|||+
T Consensus 112 e~~lVsasGDsT~r~Wdvk~s-----------------~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~ 174 (720)
T KOG0321|consen 112 ESLLVSASGDSTIRPWDVKTS-----------------RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC 174 (720)
T ss_pred ceeEEEccCCceeeeeeeccc-----------------eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence 357888889999999954332 2233345779999999999999554 8899999999999998
Q ss_pred CCCe---------------------------EEEEeccCCCCeEE---EEEcCCCCEEEEEeC-CCeEEEEECCCCCee-
Q 004885 585 ESFT---------------------------VKSTLEEHTQWITD---VRFSPSLSRLATSSA-DRTVRVWDTENPDYS- 632 (725)
Q Consensus 585 ~~~~---------------------------~i~~l~~H~~~V~~---IafsPd~~~Lasgs~-DgtIrvWDl~~~~~~- 632 (725)
+... .+...+.|...|.. +.+.-|...|++++. |+.|+|||+++....
T Consensus 175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~ 254 (720)
T KOG0321|consen 175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAY 254 (720)
T ss_pred eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccc
Confidence 5321 11122345555555 556678888999887 999999999975421
Q ss_pred ------eEEEecC---CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe--eEEEEec---CCCeEEEEEecCCCEEE
Q 004885 633 ------LRTFTGH---STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKC---QSGATQMRFQPRLGRIL 698 (725)
Q Consensus 633 ------l~~~~~h---~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~--~v~~~~~---~~~V~sv~fspdg~~Ll 698 (725)
+..+..| .-.+.++..+..|.+++|+|. |+.|++||+.... ++..+.+ ..--..-..+||+.+|+
T Consensus 255 r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~ 333 (720)
T KOG0321|consen 255 RQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLL 333 (720)
T ss_pred ccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEe
Confidence 1112223 345788888888999998888 9999999998643 3333333 11122234689999999
Q ss_pred EEEcCCeEEEEECCCC-eEEEEEeCC
Q 004885 699 AAAIENYISILDVETQ-VCRLKLQVS 723 (725)
Q Consensus 699 a~s~Dg~V~IwDl~tg-~~v~~l~GH 723 (725)
+++.|..++||.+.+- .....+.||
T Consensus 334 SgSsd~~ayiw~vs~~e~~~~~l~Gh 359 (720)
T KOG0321|consen 334 SGSSDEQAYIWVVSSPEAPPALLLGH 359 (720)
T ss_pred ccCCCcceeeeeecCccCChhhhhCc
Confidence 9999999999999875 344444454
No 162
>KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only]
Probab=99.56 E-value=2.1e-15 Score=151.42 Aligned_cols=77 Identities=32% Similarity=0.733 Sum_probs=64.7
Q ss_pred CcchHHHHHHHHHHHHHhhCChHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHHHHhhhhhc----cCccchhhhhhh
Q 004885 4 NNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIART----NEKHSESAASYI 79 (725)
Q Consensus 4 ~~~~~~~~L~~yiydyl~k~~~~~~A~~f~~e~~~~~~~~~~~~~~~fL~eWw~~fwd~f~a~~----~~~~s~~a~qYi 79 (725)
++-.||++|..||||||++-+.+++|++|+.|..+..+ +.+-.+.+||.+|||||||+|||.. ...|+..++.+.
T Consensus 12 Sd~qArekLa~YvYEYLlhvgaqksaqtflseirwekn-itlge~p~FLhsWWcvFwDLYcAAPeRRd~c~HSsEAKaFh 90 (354)
T KOG4594|consen 12 SDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKN-ITLGEPPGFLHSWWCVFWDLYCAAPERRDTCEHSSEAKAFH 90 (354)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhh-hhccCCcchhhhhHHHHHHHhhcCccccCcccccHhhhhhh
Confidence 56679999999999999999999999999999986655 5677788999999999999999944 346666666655
Q ss_pred hH
Q 004885 80 ES 81 (725)
Q Consensus 80 q~ 81 (725)
+.
T Consensus 91 dy 92 (354)
T KOG4594|consen 91 DY 92 (354)
T ss_pred hh
Confidence 53
No 163
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.55 E-value=2e-12 Score=138.03 Aligned_cols=198 Identities=25% Similarity=0.406 Sum_probs=154.9
Q ss_pred cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC-CCeEEEEE-cCCCC-EEEEEeC-CCcEEEE
Q 004885 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHF-SPDGK-LLATGGH-DKKAVLW 582 (725)
Q Consensus 507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~-~~V~~i~f-Spdg~-~LaSgs~-Dg~V~IW 582 (725)
..+..++.|+.+.+|...... ..+..+..+. ..+..+.+ ++++. +++..+. |+.+++|
T Consensus 78 ~~~~~~~~d~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 78 ELLLSGSSDGTIKLWDLDNGE------------------KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred cEEEEecCCCcEEEEEcCCCc------------------eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 377888899999999543331 2334444433 36777777 78787 5555445 9999999
Q ss_pred ECCC-CeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEe
Q 004885 583 CTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (725)
Q Consensus 583 dl~~-~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs 660 (725)
|... ......+..|...|.+++|+|++.++++++. |+.+++|++.... .+..+.+|...|.+++|+|++..++++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-eEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 9988 7888889999999999999999998888885 9999999999865 68888889999999999999875665668
Q ss_pred CCCcEEEEECCCCeeEE-EEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeE-EEEEeCC
Q 004885 661 NNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC-RLKLQVS 723 (725)
Q Consensus 661 ~Dg~I~IwDl~t~~~v~-~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~-v~~l~GH 723 (725)
.|+.|++||...+.++. .+..+.......|++++..+++++.|+.+++||++.... +..+.+|
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 283 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH 283 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecC
Confidence 89999999999888777 455433332227999987888889999999999987654 4444455
No 164
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.55 E-value=7.7e-14 Score=143.35 Aligned_cols=202 Identities=15% Similarity=0.210 Sum_probs=146.2
Q ss_pred CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC---CeEEEEEcCCCCEEEEEeCCCcE
Q 004885 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPDGKLLATGGHDKKA 579 (725)
Q Consensus 503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~---~V~~i~fSpdg~~LaSgs~Dg~V 579 (725)
.+...++++.+.|.-|.+|++.++.... .++-+ .|-+ ...|++|+|||..|++| +..+|
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lra-------------Sy~~y----dh~de~taAhsL~Fs~DGeqlfaG-ykrci 181 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRA-------------SYRAY----DHQDEYTAAHSLQFSPDGEQLFAG-YKRCI 181 (406)
T ss_pred CCccceeeeccccCceeeeecccccccc-------------chhhh----hhHHhhhhheeEEecCCCCeEeec-ccceE
Confidence 4455688888899999999665542110 00000 1222 25689999999999887 56799
Q ss_pred EEEEC-CCCeEE--EEec-----cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEcc
Q 004885 580 VLWCT-ESFTVK--STLE-----EHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP 650 (725)
Q Consensus 580 ~IWdl-~~~~~i--~~l~-----~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP 650 (725)
+|||+ +.++.. .... +..+-|.|++|+| +...+++++...++-||.-.... ++..+.+|.+.|+.++|++
T Consensus 182 rvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~-pl~llggh~gGvThL~~~e 260 (406)
T KOG2919|consen 182 RVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR-PLQLLGGHGGGVTHLQWCE 260 (406)
T ss_pred EEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC-ceeeecccCCCeeeEEecc
Confidence 99999 444322 1112 2367899999999 56689999999999998888777 7888899999999999999
Q ss_pred CCCeEEEEEeCCCcEEEEECCCC-eeEEEEecC-C-CeEEEE--EecCCCEEEEEEcCCeEEEEECCC-CeEEEEEeCC
Q 004885 651 SKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQ-S-GATQMR--FQPRLGRILAAAIENYISILDVET-QVCRLKLQVS 723 (725)
Q Consensus 651 ~g~~llaSgs~Dg~I~IwDl~t~-~~v~~~~~~-~-~V~sv~--fspdg~~Lla~s~Dg~V~IwDl~t-g~~v~~l~GH 723 (725)
+|+.++.-+..|-.|-+||++.. .++..+..+ + .--.|- ..|++.+|++|+.||.|++||+++ |..+..+..|
T Consensus 261 dGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~ 339 (406)
T KOG2919|consen 261 DGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNY 339 (406)
T ss_pred CcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccc
Confidence 99987755556788999999863 445455431 1 223444 468889999999999999999998 6655555444
No 165
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=5.7e-14 Score=149.06 Aligned_cols=194 Identities=19% Similarity=0.230 Sum_probs=148.4
Q ss_pred eEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEE
Q 004885 483 SLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCH 562 (725)
Q Consensus 483 s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~ 562 (725)
.+++|+.+|. .+++|+.|+++|+|.++.. ..+.....|...|.+++
T Consensus 148 k~vaf~~~gs---------------~latgg~dg~lRv~~~Ps~-------------------~t~l~e~~~~~eV~DL~ 193 (398)
T KOG0771|consen 148 KVVAFNGDGS---------------KLATGGTDGTLRVWEWPSM-------------------LTILEEIAHHAEVKDLD 193 (398)
T ss_pred eEEEEcCCCC---------------EeeeccccceEEEEecCcc-------------------hhhhhhHhhcCccccce
Confidence 6677777765 8999999999999965444 23445567889999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCeEEEEec--cCCCCeEEEEEcCCC---C--EEEEEeCCCeEEEEECCCCCe----
Q 004885 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSL---S--RLATSSADRTVRVWDTENPDY---- 631 (725)
Q Consensus 563 fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~--~H~~~V~~IafsPd~---~--~Lasgs~DgtIrvWDl~~~~~---- 631 (725)
|+|||++|++-+.| ..+||+++++.++.... +....+..|.|.-++ . .++.-...+.|+.||+..-..
T Consensus 194 FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l 272 (398)
T KOG0771|consen 194 FSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFL 272 (398)
T ss_pred eCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccccc
Confidence 99999999999999 89999999987665554 233456678888765 2 223333455677766643221
Q ss_pred eeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 004885 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISIL 709 (725)
Q Consensus 632 ~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s~Dg~V~Iw 709 (725)
..+........|++++.+++|+ +++.|+.||.|.|++..+-+++..++. ...|+.+.|+||.++++..+.|..+.|.
T Consensus 273 ~~~~~~~~~~siSsl~VS~dGk-f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 273 RLRKKIKRFKSISSLAVSDDGK-FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred chhhhhhccCcceeEEEcCCCc-EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence 2222223335799999999998 888999999999999999888887774 4569999999999999999999988888
Q ss_pred ECC
Q 004885 710 DVE 712 (725)
Q Consensus 710 Dl~ 712 (725)
.+.
T Consensus 352 ~l~ 354 (398)
T KOG0771|consen 352 KLA 354 (398)
T ss_pred EEe
Confidence 764
No 166
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=8.4e-14 Score=150.90 Aligned_cols=210 Identities=19% Similarity=0.285 Sum_probs=163.5
Q ss_pred cccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEe-c
Q 004885 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-P 552 (725)
Q Consensus 474 l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ 552 (725)
....+..++.++.|+.+|. +|++||.|-.+.|| +-+..+.++.+ .
T Consensus 45 eL~GH~GCVN~LeWn~dG~---------------lL~SGSDD~r~ivW-------------------d~~~~KllhsI~T 90 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGE---------------LLASGSDDTRLIVW-------------------DPFEYKLLHSIST 90 (758)
T ss_pred hhccccceecceeecCCCC---------------EEeecCCcceEEee-------------------cchhcceeeeeec
Confidence 3445777899999999998 99999999999999 33344444444 4
Q ss_pred CCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCC----------CeEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCC
Q 004885 553 ASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSL-SRLATSSADR 619 (725)
Q Consensus 553 ~H~~~V~~i~fSp--dg~~LaSgs~Dg~V~IWdl~~----------~~~i~~l~~H~~~V~~IafsPd~-~~Lasgs~Dg 619 (725)
+|+..|.|+.|-| +.+++++|..|+.|+++|+.. .+....+..|...|..|+..|++ ..+.+++.||
T Consensus 91 gHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDG 170 (758)
T KOG1310|consen 91 GHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDG 170 (758)
T ss_pred ccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCc
Confidence 8999999999999 456899999999999999974 23445667899999999999987 7889999999
Q ss_pred eEEEEECCCCCeeeEEEec---------CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC--------C---------
Q 004885 620 TVRVWDTENPDYSLRTFTG---------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--------G--------- 673 (725)
Q Consensus 620 tIrvWDl~~~~~~l~~~~~---------h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t--------~--------- 673 (725)
+|+-+|++.+..|-..... ..-...++.++|...++|+.|+.|-..++||.+. +
T Consensus 171 tirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~ 250 (758)
T KOG1310|consen 171 TIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKD 250 (758)
T ss_pred ceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcc
Confidence 9999999986644332221 1234688999999999999999999999999541 1
Q ss_pred -eeEEEEec-------------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEE
Q 004885 674 -SCAGVFKC-------------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCR 717 (725)
Q Consensus 674 -~~v~~~~~-------------~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v 717 (725)
.|+.-|.. ...++-+.|+|+|..|++.-....|++||+..++..
T Consensus 251 ~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 251 CRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred cchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 13433321 112566789999999888877788999999887543
No 167
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=6.4e-13 Score=147.66 Aligned_cols=203 Identities=17% Similarity=0.296 Sum_probs=162.5
Q ss_pred cccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecC
Q 004885 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (725)
Q Consensus 474 l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 553 (725)
+.....+.+..++|.+.+ -|.+.+.+|.|.-| +-.+++....+..
T Consensus 64 i~g~~drsIE~L~W~e~~----------------RLFS~g~sg~i~Ew-------------------Dl~~lk~~~~~d~ 108 (691)
T KOG2048|consen 64 IHGPEDRSIESLAWAEGG----------------RLFSSGLSGSITEW-------------------DLHTLKQKYNIDS 108 (691)
T ss_pred EecCCCCceeeEEEccCC----------------eEEeecCCceEEEE-------------------ecccCceeEEecC
Confidence 333445556666666333 35666677888888 3445567777788
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE--EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 004885 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~--~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~ 631 (725)
..+.|.+++.+|.+..++.|++||.++.++...++... .|...++.|.+++|+|++..|++|+.||.|++||+..+.
T Consensus 109 ~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~- 187 (691)
T KOG2048|consen 109 NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQ- 187 (691)
T ss_pred CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCc-
Confidence 88999999999999999999999988888887766543 344456899999999999999999999999999999887
Q ss_pred eeEEEe--------cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEc
Q 004885 632 SLRTFT--------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI 702 (725)
Q Consensus 632 ~l~~~~--------~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~ 702 (725)
.+.... +...-|++|.|-.++ .+++|+..|+|.+||...+..+..+.. ...|.+++..+++.++++++.
T Consensus 188 t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGv 265 (691)
T KOG2048|consen 188 TLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGV 265 (691)
T ss_pred eEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccC
Confidence 333111 123458888888665 578999999999999999999998886 778999999999999999999
Q ss_pred CCeEEEEECCCC
Q 004885 703 ENYISILDVETQ 714 (725)
Q Consensus 703 Dg~V~IwDl~tg 714 (725)
|+.|.-|...+.
T Consensus 266 d~~ii~~~~~~~ 277 (691)
T KOG2048|consen 266 DPKIIQYSLTTN 277 (691)
T ss_pred CCceEEEEecCC
Confidence 999999988776
No 168
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.54 E-value=2e-13 Score=138.65 Aligned_cols=188 Identities=13% Similarity=0.225 Sum_probs=146.0
Q ss_pred CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEC
Q 004885 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCT 584 (725)
Q Consensus 506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl 584 (725)
.+++.+.|.|.+..+|....+ ........+-+|...|++|+|..++. .||++|.||.||+||+
T Consensus 163 p~~igtSSiDTTCTiWdie~~----------------~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDL 226 (364)
T KOG0290|consen 163 PNLIGTSSIDTTCTIWDIETG----------------VSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDL 226 (364)
T ss_pred cceeEeecccCeEEEEEEeec----------------cccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEe
Confidence 357888899999999954333 22234456779999999999998554 8999999999999999
Q ss_pred CCCeEEEEec---cCCCCeEEEEEcC-CCCEEEEEeCCC-eEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEE
Q 004885 585 ESFTVKSTLE---EHTQWITDVRFSP-SLSRLATSSADR-TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (725)
Q Consensus 585 ~~~~~i~~l~---~H~~~V~~IafsP-d~~~Lasgs~Dg-tIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSg 659 (725)
+..+.-.++. ....+...++|++ |-++++|-..|. .|.|.|++.+..++..+.+|.+.|+.|+|.|.....+|+|
T Consensus 227 R~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hicta 306 (364)
T KOG0290|consen 227 RSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTA 306 (364)
T ss_pred cccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeec
Confidence 8755433332 2246788899988 567788876654 7999999999889999999999999999999999999999
Q ss_pred eCCCcEEEEECCCC------eeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 004885 660 DNNSEIRYWSINNG------SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISIL 709 (725)
Q Consensus 660 s~Dg~I~IwDl~t~------~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~Iw 709 (725)
++|..+.|||+..- .++..+...+.|..+.|++...-.++.+.++.+.|.
T Consensus 307 GDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 307 GDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred CCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 99999999999752 234444457889999999765555555566666554
No 169
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.53 E-value=3.3e-13 Score=138.80 Aligned_cols=219 Identities=16% Similarity=0.223 Sum_probs=161.0
Q ss_pred EEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEE
Q 004885 484 LLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHF 563 (725)
Q Consensus 484 ~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~f 563 (725)
-+.|+|||. .+.+-+.|..+.+|..+.+........... ......++.. ....|+..+|
T Consensus 54 gckWSPDGS---------------ciL~~sedn~l~~~nlP~dlys~~~~~~~~----~~~~~~~r~~--eg~tvydy~w 112 (406)
T KOG2919|consen 54 GCKWSPDGS---------------CILSLSEDNCLNCWNLPFDLYSKKADGPLN----FSKHLSYRYQ--EGETVYDYCW 112 (406)
T ss_pred cceeCCCCc---------------eEEeecccCeeeEEecChhhcccCCCCccc----cccceeEEec--cCCEEEEEEe
Confidence 458999998 677788999999997766543322211110 0001112222 2345888888
Q ss_pred c-------CCCCEEEEEeCCCcEEEEECCCCeEEEEecc--CC---CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-
Q 004885 564 S-------PDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HT---QWITDVRFSPSLSRLATSSADRTVRVWDTENPD- 630 (725)
Q Consensus 564 S-------pdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~--H~---~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~- 630 (725)
- |+.+++|+.+.|.-|++||.-+++....+.+ |- ....+++|+|||..|+.| ...+|+|||+..+.
T Consensus 113 Ys~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr 191 (406)
T KOG2919|consen 113 YSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGR 191 (406)
T ss_pred eeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCC
Confidence 5 5778999999999999999999887766643 32 234689999999999876 57789999995443
Q ss_pred e-eeEEEe-----cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEc-
Q 004885 631 Y-SLRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI- 702 (725)
Q Consensus 631 ~-~l~~~~-----~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~- 702 (725)
. .+.... +..+.|.+++|+|....+++.++...++-||.-....++..+.. .++|+.++|+++|..|++|+.
T Consensus 192 ~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk 271 (406)
T KOG2919|consen 192 DCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK 271 (406)
T ss_pred CCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC
Confidence 1 122222 23677999999999888999999888888988888877777665 788999999999999999987
Q ss_pred CCeEEEEECCCC-eEEEEEeCCC
Q 004885 703 ENYISILDVETQ-VCRLKLQVSH 724 (725)
Q Consensus 703 Dg~V~IwDl~tg-~~v~~l~GH~ 724 (725)
|..|.+||++.. .++..|.+|.
T Consensus 272 ~dkIl~WDiR~~~~pv~~L~rhv 294 (406)
T KOG2919|consen 272 DDKILCWDIRYSRDPVYALERHV 294 (406)
T ss_pred CCeEEEEeehhccchhhhhhhhc
Confidence 789999999864 6666776664
No 170
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.53 E-value=5.9e-14 Score=155.89 Aligned_cols=168 Identities=18% Similarity=0.313 Sum_probs=139.4
Q ss_pred eeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC
Q 004885 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK-----KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 618 (725)
Q Consensus 544 ~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg-----~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D 618 (725)
.+.+++.+.||...|+|++.+|++++||+++... .|++|+..+...+..+.+|.-.|+.++|+||+++|++.+.|
T Consensus 514 LwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD 593 (764)
T KOG1063|consen 514 LWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRD 593 (764)
T ss_pred cchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecC
Confidence 3456778889999999999999999999997643 68999999998888999999999999999999999999999
Q ss_pred CeEEEEECCCCCe---eeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCC--eeEEE---EecCCCeEEEEE
Q 004885 619 RTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGV---FKCQSGATQMRF 690 (725)
Q Consensus 619 gtIrvWDl~~~~~---~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~--~~v~~---~~~~~~V~sv~f 690 (725)
.++.+|....... .....+.|+.-|++++|+|++.+ |+|++.|.+|+||..... +++.. ++....|+.++|
T Consensus 594 Rt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~-FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~ 672 (764)
T KOG1063|consen 594 RTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKY-FATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAY 672 (764)
T ss_pred ceEEeeeeecccchhhhhccccccceEEEEcccCcccce-eEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEe
Confidence 9999998854432 23346789999999999999874 889999999999999877 55544 344788999998
Q ss_pred ecCC----C-EEEEEEcCCeEEEEECC
Q 004885 691 QPRL----G-RILAAAIENYISILDVE 712 (725)
Q Consensus 691 spdg----~-~Lla~s~Dg~V~IwDl~ 712 (725)
.|-. . .+++|-..|.|.+|...
T Consensus 673 ~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 673 LPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred eccccccccceEEEEecccEEEEEecc
Confidence 7632 2 34455557999999865
No 171
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.53 E-value=2.8e-13 Score=137.64 Aligned_cols=216 Identities=17% Similarity=0.248 Sum_probs=158.1
Q ss_pred cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST 555 (725)
Q Consensus 476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~ 555 (725)
+.+...++.+.|.|+..+.+. .+|++ .+..+|+|...+++ .+.....+.... .-..+.
T Consensus 93 fd~~YP~tK~~wiPd~~g~~p----------dlLAT--s~D~LRlWri~~ee-~~~~~~~~L~~~---------kns~~~ 150 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYP----------DLLAT--SSDFLRLWRIGDEE-SRVELQSVLNNN---------KNSEFC 150 (364)
T ss_pred CCCCCCccceEecCCccccCc----------chhhc--ccCeEEEEeccCcC-CceehhhhhccC---------cccccC
Confidence 344556777888887753322 35555 34689999766542 111111111111 123567
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCe---EEEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCC
Q 004885 556 SKVESCHFSP-DGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPD 630 (725)
Q Consensus 556 ~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~~---~i~~l~~H~~~V~~IafsPd~-~~Lasgs~DgtIrvWDl~~~~ 630 (725)
.++++..|+. |-++|.++|-|-+..|||++++. ....+-.|...|++|+|...+ ..|++++.||.||+||++...
T Consensus 151 aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le 230 (364)
T KOG0290|consen 151 APLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE 230 (364)
T ss_pred CcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc
Confidence 7899999987 77899999999999999998852 456678999999999999854 578899999999999999876
Q ss_pred eeeEEEecC--CCCeEEEEEccCCCeEEEEEeCC-CcEEEEECCC-CeeEEEEec-CCCeEEEEEecCCC-EEEEEEcCC
Q 004885 631 YSLRTFTGH--STTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINN-GSCAGVFKC-QSGATQMRFQPRLG-RILAAAIEN 704 (725)
Q Consensus 631 ~~l~~~~~h--~~~V~sl~fsP~g~~llaSgs~D-g~I~IwDl~t-~~~v~~~~~-~~~V~sv~fspdg~-~Lla~s~Dg 704 (725)
.....+... ..+...++|++...+++++-..| ..|.|.|++. ...+..+.. .+.|+.|+|.|... +|++++.|.
T Consensus 231 HSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~ 310 (364)
T KOG0290|consen 231 HSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDC 310 (364)
T ss_pred cceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcc
Confidence 444444432 46788999999888888876544 5699999996 455666664 67899999999754 688888899
Q ss_pred eEEEEECCC
Q 004885 705 YISILDVET 713 (725)
Q Consensus 705 ~V~IwDl~t 713 (725)
.+.|||+..
T Consensus 311 qaliWDl~q 319 (364)
T KOG0290|consen 311 QALIWDLQQ 319 (364)
T ss_pred eEEEEeccc
Confidence 999999864
No 172
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.53 E-value=1.7e-13 Score=140.83 Aligned_cols=204 Identities=19% Similarity=0.242 Sum_probs=163.9
Q ss_pred CCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCe
Q 004885 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV 558 (725)
Q Consensus 479 s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V 558 (725)
-.++++++|+.|++ .++.+.....|.+|... ....++..+++..|...|
T Consensus 10 ~~pitchAwn~drt---------------~iAv~~~~~evhiy~~~----------------~~~~w~~~htls~Hd~~v 58 (361)
T KOG1523|consen 10 LEPITCHAWNSDRT---------------QIAVSPNNHEVHIYSML----------------GADLWEPAHTLSEHDKIV 58 (361)
T ss_pred cCceeeeeecCCCc---------------eEEeccCCceEEEEEec----------------CCCCceeceehhhhCcce
Confidence 34678999999887 66777777778888321 122367889999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECC-C--CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe---e
Q 004885 559 ESCHFSPDGKLLATGGHDKKAVLWCTE-S--FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---S 632 (725)
Q Consensus 559 ~~i~fSpdg~~LaSgs~Dg~V~IWdl~-~--~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~---~ 632 (725)
++|+|+|..+.|++|+.|...+||... . .++.-++..|...+++|.|+|..+.|++|+....|.||-++.... .
T Consensus 59 tgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVs 138 (361)
T KOG1523|consen 59 TGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVS 138 (361)
T ss_pred eEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehh
Confidence 999999999999999999999999983 3 345566778999999999999999999999999999998875431 1
Q ss_pred eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC-----C-------------CeeEEEE-ecCCCeEEEEEecC
Q 004885 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-----N-------------GSCAGVF-KCQSGATQMRFQPR 693 (725)
Q Consensus 633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~-----t-------------~~~v~~~-~~~~~V~sv~fspd 693 (725)
...-+.+.+.|++++|+|++- ++++|+.|+..|||..- . |..+..+ ...+.|..+.|+|.
T Consensus 139 KhikkPirStv~sldWhpnnV-LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s 217 (361)
T KOG1523|consen 139 KHIKKPIRSTVTSLDWHPNNV-LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS 217 (361)
T ss_pred hhhCCccccceeeeeccCCcc-eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC
Confidence 233445678899999999965 88899999999998642 1 2233344 23577999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCC
Q 004885 694 LGRILAAAIENYISILDVETQ 714 (725)
Q Consensus 694 g~~Lla~s~Dg~V~IwDl~tg 714 (725)
|..|+-.+.|.+|.+-|....
T Consensus 218 G~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 218 GNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred CCEeeEecCCCceEEeecCCC
Confidence 999999999999999997765
No 173
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=9.3e-14 Score=151.64 Aligned_cols=179 Identities=18% Similarity=0.283 Sum_probs=147.1
Q ss_pred eeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC--------CCeEEEEeccCCCCeEEEEEcCCCCEEEEEe
Q 004885 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--------SFTVKSTLEEHTQWITDVRFSPSLSRLATSS 616 (725)
Q Consensus 545 ~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~--------~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs 616 (725)
|....++..|.+.|+.+.|.+....|++|++|+++++|++. ..+++.+|.+|.++|.|+++.+++..+++|+
T Consensus 284 w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg 363 (577)
T KOG0642|consen 284 WNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG 363 (577)
T ss_pred cceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec
Confidence 55555888999999999999999999999999999999992 2357889999999999999999999999999
Q ss_pred CCCeEEEEECC---------CCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee-E----------
Q 004885 617 ADRTVRVWDTE---------NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-A---------- 676 (725)
Q Consensus 617 ~DgtIrvWDl~---------~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~-v---------- 676 (725)
.||+|++|++. .+.....++.||.+.|+.++++.... .|++|+.||+||.|+...... +
T Consensus 364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~-~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~P 442 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD-RLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYP 442 (577)
T ss_pred cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc-ceeeecCCceEEeeccCCcCccccCCccccCCc
Confidence 99999999553 12234567889999999999999866 566999999999998764332 0
Q ss_pred ---------------------------------EEEec--------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 004885 677 ---------------------------------GVFKC--------QSGATQMRFQPRLGRILAAAIENYISILDVETQV 715 (725)
Q Consensus 677 ---------------------------------~~~~~--------~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~ 715 (725)
..+.. ...+..|.++|.....+++..|+.|+++|..+++
T Consensus 443 lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~ 522 (577)
T KOG0642|consen 443 LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK 522 (577)
T ss_pred ceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc
Confidence 00000 0124567888988889999999999999999999
Q ss_pred EEEEEeCCC
Q 004885 716 CRLKLQVSH 724 (725)
Q Consensus 716 ~v~~l~GH~ 724 (725)
+++....|.
T Consensus 523 ~l~s~~a~~ 531 (577)
T KOG0642|consen 523 ILHSMVAHK 531 (577)
T ss_pred cchheeecc
Confidence 999888774
No 174
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=3.6e-14 Score=153.66 Aligned_cols=167 Identities=17% Similarity=0.328 Sum_probs=137.3
Q ss_pred eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-ccCCCCeEEEEEcC--CCCEEEEEeCCCeEE
Q 004885 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTVR 622 (725)
Q Consensus 546 ~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l-~~H~~~V~~IafsP--d~~~Lasgs~DgtIr 622 (725)
.....+.||++-|.|+.|+.+|.+|++||.|-.+.|||.-..+.++.+ .+|...|.++.|-| +.+.+++|..|+.|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 344567899999999999999999999999999999999877777655 68999999999999 577899999999999
Q ss_pred EEECCC---------CCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe-eEEEEe---------c-C
Q 004885 623 VWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK---------C-Q 682 (725)
Q Consensus 623 vWDl~~---------~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~-~v~~~~---------~-~ 682 (725)
|||+.. .....+.+..|...|..|+-.|+++..|.+++.||+|+-||++... |-.... . -
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 999985 2235677788999999999999998899999999999999998631 111110 0 1
Q ss_pred CCeEEEEEecCCC-EEEEEEcCCeEEEEECC
Q 004885 683 SGATQMRFQPRLG-RILAAAIENYISILDVE 712 (725)
Q Consensus 683 ~~V~sv~fspdg~-~Lla~s~Dg~V~IwDl~ 712 (725)
-...++..+|... +|++|++|-.+++||.+
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 2357788888765 56777889999999953
No 175
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.51 E-value=2.1e-12 Score=129.86 Aligned_cols=156 Identities=19% Similarity=0.294 Sum_probs=112.8
Q ss_pred EEEEEcCCCCEEEEEeC---C-------CcEEEEECCC-CeEEEEec-cCCCCeEEEEEcCCCCEEEEE--eCCCeEEEE
Q 004885 559 ESCHFSPDGKLLATGGH---D-------KKAVLWCTES-FTVKSTLE-EHTQWITDVRFSPSLSRLATS--SADRTVRVW 624 (725)
Q Consensus 559 ~~i~fSpdg~~LaSgs~---D-------g~V~IWdl~~-~~~i~~l~-~H~~~V~~IafsPd~~~Lasg--s~DgtIrvW 624 (725)
..+.|+++|++|++-.. | +...||.++. ...+..+. ...++|.+++|+|+++.|+++ ..+..|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46889999987664322 2 2344554422 22333332 234579999999999987655 357799999
Q ss_pred ECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEe--CCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEc
Q 004885 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI 702 (725)
Q Consensus 625 Dl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs--~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~ 702 (725)
|++ .. .+..+. ...+..|.|+|+|+.+++++. ..|.|.+||+++.+++..+++ ..++.++|+|+|++|++++.
T Consensus 89 d~~-~~-~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GK-KIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-cc-EeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc-CcEEEEEEcCCCCEEEEEEe
Confidence 997 33 455553 467889999999996655442 246799999999999888875 45899999999999998875
Q ss_pred ------CCeEEEEECCCCeEEEEE
Q 004885 703 ------ENYISILDVETQVCRLKL 720 (725)
Q Consensus 703 ------Dg~V~IwDl~tg~~v~~l 720 (725)
|+.++||+.. |+.+...
T Consensus 164 ~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred ccceeccccEEEEEec-CeEeEec
Confidence 7899999985 7776654
No 176
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.50 E-value=3.2e-13 Score=139.16 Aligned_cols=162 Identities=17% Similarity=0.351 Sum_probs=135.5
Q ss_pred ecCCCCCeEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCe---EEEEe--ccCCCCeEEEEEcCC----CCEEEEEe
Q 004885 551 IPASTSKVESCHFSP-----DGKLLATGGHDKKAVLWCTESFT---VKSTL--EEHTQWITDVRFSPS----LSRLATSS 616 (725)
Q Consensus 551 l~~H~~~V~~i~fSp-----dg~~LaSgs~Dg~V~IWdl~~~~---~i~~l--~~H~~~V~~IafsPd----~~~Lasgs 616 (725)
.+.|+.+|..++|++ +-..+|+++. ..|.||...... .+..+ ..|....+.++|+-+ ..+++.++
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 357889999999985 2235666654 478888765432 22222 347788899999774 34788899
Q ss_pred CCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec----CCCeEEEEEec
Q 004885 617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGATQMRFQP 692 (725)
Q Consensus 617 ~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~----~~~V~sv~fsp 692 (725)
.-|.|+|.|+.+.. +...+.+|...|..|.|+|+...++++|+.|..||+|++++..|+..|.+ ...|.++.|++
T Consensus 113 ~~GvIrVid~~~~~-~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~ 191 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQ-CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL 191 (385)
T ss_pred ceeEEEEEecchhh-hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC
Confidence 99999999999988 78999999999999999999999999999999999999999999999975 56799999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCC
Q 004885 693 RLGRILAAAIENYISILDVETQ 714 (725)
Q Consensus 693 dg~~Lla~s~Dg~V~IwDl~tg 714 (725)
+|.+|++++.|..|++|++...
T Consensus 192 ~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 192 DGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred CCCeeeccCCcceEEEEecChh
Confidence 9999999999999999999854
No 177
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=1.4e-12 Score=129.70 Aligned_cols=193 Identities=16% Similarity=0.251 Sum_probs=143.2
Q ss_pred CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004885 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (725)
Q Consensus 506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~ 585 (725)
++++.+|+. |.|+-|.+.+.... ....+.|+........ ..---.|+++...|..+-|+.++.|+.++-||++
T Consensus 72 d~~Lls~gd-G~V~gw~W~E~~es-~~~K~lwe~~~P~~~~-----~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE 144 (325)
T KOG0649|consen 72 DDFLLSGGD-GLVYGWEWNEEEES-LATKRLWEVKIPMQVD-----AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLE 144 (325)
T ss_pred hhheeeccC-ceEEEeeehhhhhh-ccchhhhhhcCccccC-----cccCCccceeEeccCCCcEEEecCCeEEEEEEec
Confidence 346777654 99999988766432 2333444432221111 0112358999999987777777789999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEec---------C-CCCeEEEEEccCCCeE
Q 004885 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG---------H-STTVMSLDFHPSKEDL 655 (725)
Q Consensus 586 ~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~---------h-~~~V~sl~fsP~g~~l 655 (725)
+++..+++++|+..|.++.-......+++|+.||++||||+++.+ ++..+.. | ...|.+++.+.+ .
T Consensus 145 ~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k-~v~~ie~yk~~~~lRp~~g~wigala~~ed---W 220 (325)
T KOG0649|consen 145 DGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQK-HVSMIEPYKNPNLLRPDWGKWIGALAVNED---W 220 (325)
T ss_pred CCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccc-eeEEeccccChhhcCcccCceeEEEeccCc---e
Confidence 999999999999999999986666789999999999999999988 5555432 2 234677766544 4
Q ss_pred EEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885 656 LCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE 712 (725)
Q Consensus 656 laSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~ 712 (725)
++ |+....+.+|.++..+++..|....+|..+.|..| .+++++..+.|.-|.+.
T Consensus 221 lv-CGgGp~lslwhLrsse~t~vfpipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 221 LV-CGGGPKLSLWHLRSSESTCVFPIPARVHLVDFVDD--CVLIGGEGNHVQSYTLN 274 (325)
T ss_pred EE-ecCCCceeEEeccCCCceEEEecccceeEeeeecc--eEEEeccccceeeeeec
Confidence 43 44467899999999999999998899999999865 56777767777777654
No 178
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.49 E-value=2.4e-14 Score=161.14 Aligned_cols=196 Identities=22% Similarity=0.297 Sum_probs=158.4
Q ss_pred CCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 004885 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 578 (725)
Q Consensus 499 s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~ 578 (725)
+..++...+++.+|+.|..|++|...++ ......+||.+.|+.++.+.+..+++++|.|+.
T Consensus 195 ca~fDrtg~~Iitgsdd~lvKiwS~et~-------------------~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 195 CAIFDRTGRYIITGSDDRLVKIWSMETA-------------------RCLASCRGHSGDITDLAVSSNNTMIAAASNDKV 255 (1113)
T ss_pred eeeeccccceEeecCccceeeeeeccch-------------------hhhccCCCCccccchhccchhhhhhhhcccCce
Confidence 3334445569999999999999943222 455677899999999999998889999999999
Q ss_pred EEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-C----------------------------
Q 004885 579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-P---------------------------- 629 (725)
Q Consensus 579 V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~-~---------------------------- 629 (725)
|++|.+.++.++.++.+|++.|++|+|+|-. +.+.||++++||.+- .
T Consensus 256 IrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f 331 (1113)
T KOG0644|consen 256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRF 331 (1113)
T ss_pred EEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccc
Confidence 9999999999999999999999999999943 677899999998760 0
Q ss_pred ---C----e----------------------------------------------eeEEEecCCCCeEEEEEccCCCeEE
Q 004885 630 ---D----Y----------------------------------------------SLRTFTGHSTTVMSLDFHPSKEDLL 656 (725)
Q Consensus 630 ---~----~----------------------------------------------~l~~~~~h~~~V~sl~fsP~g~~ll 656 (725)
. . .++...+|...+..+.++|-...+.
T Consensus 332 ~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ 411 (1113)
T KOG0644|consen 332 LTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIA 411 (1113)
T ss_pred ccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhh
Confidence 0 0 0111235677888899999888888
Q ss_pred EEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEE
Q 004885 657 CSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCR 717 (725)
Q Consensus 657 aSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v 717 (725)
.+++.||.+.|||+-.|.++..+.. +..+...+|+++|..++....-|.+.|+...-++..
T Consensus 412 msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 412 MSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred hhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCccc
Confidence 8999999999999999988877654 777889999999988877777788999876655433
No 179
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=1e-12 Score=140.54 Aligned_cols=167 Identities=16% Similarity=0.246 Sum_probs=142.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--CeEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCC
Q 004885 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPD 630 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~--~~~i~~l~~H~~~V~~IafsPd~~-~Lasgs~DgtIrvWDl~~~~ 630 (725)
..+.|+|+.|+|...+|++|+.|++++||-++. ...+..+.--..+|.+.+|+|+|. .+++++....+..||+.+.+
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 346799999999999999999999999999865 234445544578999999999998 89999999999999998876
Q ss_pred e-eeEEEecCC-CCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 004885 631 Y-SLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 708 (725)
Q Consensus 631 ~-~l~~~~~h~-~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~I 708 (725)
. .+....++. ..+..+..++++. +++..+..|.|.+....++..+..++..+.|..++|+.|++.|++++.+|.|.+
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 2 122223333 3577788899988 667788899999999999999999999999999999999999999999999999
Q ss_pred EECCCCeEEEEEe
Q 004885 709 LDVETQVCRLKLQ 721 (725)
Q Consensus 709 wDl~tg~~v~~l~ 721 (725)
||++...|+++|.
T Consensus 371 ~nl~~~~~~~rf~ 383 (514)
T KOG2055|consen 371 WNLRQNSCLHRFV 383 (514)
T ss_pred EecCCcceEEEEe
Confidence 9999999999885
No 180
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.7e-12 Score=132.92 Aligned_cols=173 Identities=18% Similarity=0.265 Sum_probs=130.7
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----CeEEEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEE
Q 004885 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWD 625 (725)
Q Consensus 552 ~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~----~~~i~~l~~H~~~V~~IafsP--d~~~Lasgs~DgtIrvWD 625 (725)
.+|.+-|.|+.|.+.|+++|+|+.|.+|+|||.+. ..+...++.|.+.|..|.|.+ -|..+++|+.|++++||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 47889999999999999999999999999999643 467778899999999999965 389999999999999997
Q ss_pred CCCCC--------eeeEEEecCCCCeEEEEEccCC-CeEEEEEeCCCcEEEEECCCC------eeEEEEe--------cC
Q 004885 626 TENPD--------YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNG------SCAGVFK--------CQ 682 (725)
Q Consensus 626 l~~~~--------~~l~~~~~h~~~V~sl~fsP~g-~~llaSgs~Dg~I~IwDl~t~------~~v~~~~--------~~ 682 (725)
-.... ....++....+.|++|+|.|.. ...+++++.||.||||+...- .+...+. +.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 63211 1244566677899999999974 336789999999999987543 2333333 35
Q ss_pred CCeEEEEEecCC---CEEEEEEcC-----CeEEEEECCCC----eEEEEEeCCC
Q 004885 683 SGATQMRFQPRL---GRILAAAIE-----NYISILDVETQ----VCRLKLQVSH 724 (725)
Q Consensus 683 ~~V~sv~fspdg---~~Lla~s~D-----g~V~IwDl~tg----~~v~~l~GH~ 724 (725)
....||.|+|.. .+|++|+.+ +.++||....+ ..+.+|.+|.
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~ 223 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT 223 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC
Confidence 568899998753 245555443 37899976543 4556666664
No 181
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.46 E-value=1.7e-12 Score=147.57 Aligned_cols=215 Identities=17% Similarity=0.232 Sum_probs=159.3
Q ss_pred cccccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEe
Q 004885 472 PTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI 551 (725)
Q Consensus 472 ~~l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l 551 (725)
+.+.+.....++++.|.|... .+++.|..+|.|.+|+.....+.. ....-...
T Consensus 235 Pe~~~~~~s~v~~~~f~p~~p--------------~ll~gG~y~GqV~lWD~~~~~~~~-------------~s~ls~~~ 287 (555)
T KOG1587|consen 235 PELVLESPSEVTCLKFCPFDP--------------NLLAGGCYNGQVVLWDLRKGSDTP-------------PSGLSALE 287 (555)
T ss_pred ceEEEecCCceeEEEeccCCc--------------ceEEeeccCceEEEEEccCCCCCC-------------Cccccccc
Confidence 445566677788888888554 588999999999999766554321 11111233
Q ss_pred cCCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCe-----------------------------------------
Q 004885 552 PASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTESFT----------------------------------------- 588 (725)
Q Consensus 552 ~~H~~~V~~i~fSpdg--~~LaSgs~Dg~V~IWdl~~~~----------------------------------------- 588 (725)
..|..+|+.+.|..+. .-|++++.||.|..|+++...
T Consensus 288 ~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGT 367 (555)
T KOG1587|consen 288 VSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGT 367 (555)
T ss_pred ccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEc
Confidence 4688889999996643 348888889999999764110
Q ss_pred ----E------------------EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEE
Q 004885 589 ----V------------------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (725)
Q Consensus 589 ----~------------------i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl 646 (725)
. ...+..|.++|++|.++|=+..++..+.|.+|+||.......++..+..+...|+++
T Consensus 368 e~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~v 447 (555)
T KOG1587|consen 368 EEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDV 447 (555)
T ss_pred CCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeee
Confidence 0 001224678899999999666555555599999999984444788888888889999
Q ss_pred EEccCCCeEEEEEeCCCcEEEEECCCCe--eEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004885 647 DFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVET 713 (725)
Q Consensus 647 ~fsP~g~~llaSgs~Dg~I~IwDl~t~~--~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~t 713 (725)
+|+|....+|++++.||.|.|||+.... ++.+.+. ....+.+.|++.|..|++|...|.|++|++..
T Consensus 448 aWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 448 AWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 9999999999999999999999997543 3333333 45567788899889999999999999999964
No 182
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=3.7e-12 Score=143.43 Aligned_cols=161 Identities=16% Similarity=0.138 Sum_probs=115.8
Q ss_pred eEEEEEcCCCCEEEEEe-CCCcEEEE--ECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCeee
Q 004885 558 VESCHFSPDGKLLATGG-HDKKAVLW--CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSL 633 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs-~Dg~V~IW--dl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs-~DgtIrvWDl~~~~~~l 633 (725)
+.+++|+|||+.|+.++ .++.+.|| |+.++. +..+..+...+.++.|+||++.|+.++ .++.+.||+++......
T Consensus 250 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~ 328 (429)
T PRK01742 250 NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA 328 (429)
T ss_pred cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 44789999999888764 67866555 665554 445666777788999999999776554 57888888876543223
Q ss_pred EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEEC--
Q 004885 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDV-- 711 (725)
Q Consensus 634 ~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl-- 711 (725)
..+ .+.. .++.|+|+|+.+++++ .+ .|.+||+.++.+...... ....++.|+|+|++|++++.++.+.+|++
T Consensus 329 ~~l-~~~~--~~~~~SpDG~~ia~~~-~~-~i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~ 402 (429)
T PRK01742 329 SLV-GGRG--YSAQISADGKTLVMIN-GD-NVVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVS 402 (429)
T ss_pred EEe-cCCC--CCccCCCCCCEEEEEc-CC-CEEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 333 3433 4678999999665544 34 466799998876543322 23467889999999999999998888876
Q ss_pred CCCeEEEEEeCCCC
Q 004885 712 ETQVCRLKLQVSHS 725 (725)
Q Consensus 712 ~tg~~v~~l~GH~s 725 (725)
.+|++++.+.+|.+
T Consensus 403 ~~G~~~~~l~~~~g 416 (429)
T PRK01742 403 ADGRFKARLPGSDG 416 (429)
T ss_pred CCCCceEEccCCCC
Confidence 46889999988753
No 183
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.46 E-value=1e-11 Score=130.09 Aligned_cols=155 Identities=17% Similarity=0.266 Sum_probs=128.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc---CCCCeEEEEEcCCCCEEEEEe--CCCeEEEEECCCC
Q 004885 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE---HTQWITDVRFSPSLSRLATSS--ADRTVRVWDTENP 629 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~---H~~~V~~IafsPd~~~Lasgs--~DgtIrvWDl~~~ 629 (725)
...|.+|.++ .++|+++-++. |+|||+++.+.++++.. +...+.++.+++.+.+|+--+ ..|.|.|||+.+-
T Consensus 87 pt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl 163 (391)
T KOG2110|consen 87 PTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL 163 (391)
T ss_pred CCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc
Confidence 4568888884 56777777664 99999999998887753 445566666666677887543 3689999999998
Q ss_pred CeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc-EEEEECCCCeeEEEEec---CCCeEEEEEecCCCEEEEEEcCCe
Q 004885 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-IRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENY 705 (725)
Q Consensus 630 ~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~-I~IwDl~t~~~v~~~~~---~~~V~sv~fspdg~~Lla~s~Dg~ 705 (725)
. ++..+..|.+.+.+++|+++|. ++|++++.|+ ||||++.+|..+..|+. ...|.+++|+|++.+|.+.+..++
T Consensus 164 ~-~v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT 241 (391)
T KOG2110|consen 164 Q-PVNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET 241 (391)
T ss_pred e-eeeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCe
Confidence 7 7899999999999999999998 8899998886 89999999999999985 345899999999999988888999
Q ss_pred EEEEECCCC
Q 004885 706 ISILDVETQ 714 (725)
Q Consensus 706 V~IwDl~tg 714 (725)
|+||.+++-
T Consensus 242 VHiFKL~~~ 250 (391)
T KOG2110|consen 242 VHIFKLEKV 250 (391)
T ss_pred EEEEEeccc
Confidence 999998764
No 184
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.44 E-value=1.7e-12 Score=130.45 Aligned_cols=158 Identities=20% Similarity=0.279 Sum_probs=126.4
Q ss_pred CCCCCeEEEEEcC-CCC--EEEEEeCCCcEEEEECCCCe----------EEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 004885 553 ASTSKVESCHFSP-DGK--LLATGGHDKKAVLWCTESFT----------VKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (725)
Q Consensus 553 ~H~~~V~~i~fSp-dg~--~LaSgs~Dg~V~IWdl~~~~----------~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dg 619 (725)
+..+.|.|..|.- +++ +|++|.++|.|.+||+.++. .+.....|..+|.++.|.+.-..=++|+.+.
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~d 227 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADD 227 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccc
Confidence 3457788888644 344 56788889999999998873 3344567999999999998666667888888
Q ss_pred eEEEEECCCCC--eeeEEE-ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCC
Q 004885 620 TVRVWDTENPD--YSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLG 695 (725)
Q Consensus 620 tIrvWDl~~~~--~~l~~~-~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~ 695 (725)
.+..|.+.... ..++.+ .-..-.|..+.+.||++ ++++++.|+.||||..++..++..++. ..+|.+++|+|+.+
T Consensus 228 kl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~ 306 (323)
T KOG0322|consen 228 KLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE 306 (323)
T ss_pred cceeeeeccccCcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc
Confidence 89999887542 112211 11224588999999987 999999999999999999999999886 67899999999999
Q ss_pred EEEEEEcCCeEEEEEC
Q 004885 696 RILAAAIENYISILDV 711 (725)
Q Consensus 696 ~Lla~s~Dg~V~IwDl 711 (725)
.+++++.|..|.+|++
T Consensus 307 lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 307 LMAAASKDARISLWKL 322 (323)
T ss_pred hhhhccCCceEEeeec
Confidence 9999999999999987
No 185
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.43 E-value=1.9e-12 Score=136.82 Aligned_cols=164 Identities=20% Similarity=0.328 Sum_probs=137.4
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCC---------eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004885 555 TSKVESCHFSPDGK-LLATGGHDKKAVLWCTESF---------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (725)
Q Consensus 555 ~~~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~~~---------~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvW 624 (725)
..+|..+.|.++.. +||||+.|..|+||-+... +....+..|...|++|.|+|+++.|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 45699999998766 9999999999999987431 2345678899999999999999999999999999999
Q ss_pred ECC--------C-----C--CeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEE
Q 004885 625 DTE--------N-----P--DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQM 688 (725)
Q Consensus 625 Dl~--------~-----~--~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv 688 (725)
-.. + . -.....+.+|...|..++|+|++. ++++++.|..+++||+..|..+..+.. ...|..+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV 171 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc-eeeeeeccceEEEEEeccceeEeecccccccccee
Confidence 765 2 1 123456778999999999999988 777999999999999999999888865 5669999
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 004885 689 RFQPRLGRILAAAIENYISILDVETQVCRLK 719 (725)
Q Consensus 689 ~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~ 719 (725)
+|.|.+.++++-+.|...+++.+.....++.
T Consensus 172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~ 202 (434)
T KOG1009|consen 172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKR 202 (434)
T ss_pred ecchhhhhhhhhccCcccceeeeeeeeeeee
Confidence 9999999999999999888888776554443
No 186
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.43 E-value=1e-11 Score=137.07 Aligned_cols=199 Identities=16% Similarity=0.287 Sum_probs=148.0
Q ss_pred CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (725)
Q Consensus 478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (725)
+.+++..++|.|||... +++ .+..+-+|+..++ ..+.++++|.+.
T Consensus 11 ~~hci~d~afkPDGsqL-------------~lA---Ag~rlliyD~ndG-------------------~llqtLKgHKDt 55 (1081)
T KOG1538|consen 11 AEHCINDIAFKPDGTQL-------------ILA---AGSRLLVYDTSDG-------------------TLLQPLKGHKDT 55 (1081)
T ss_pred cccchheeEECCCCceE-------------EEe---cCCEEEEEeCCCc-------------------ccccccccccce
Confidence 44578889999998711 333 3456778854444 467789999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE--------EEEe---------------------------c--cCCCCe
Q 004885 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTV--------KSTL---------------------------E--EHTQWI 600 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~--------i~~l---------------------------~--~H~~~V 600 (725)
|+|++|+.||+++|+|+.|+.|.||+-.-... +... . .....|
T Consensus 56 VycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~ 135 (1081)
T KOG1538|consen 56 VYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRI 135 (1081)
T ss_pred EEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeE
Confidence 99999999999999999999999997532111 1100 0 123567
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCC-eeeEEEecCCCCeEEEEEccCC----CeEEEEEeCCCcEEEEECCCCee
Q 004885 601 TDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSK----EDLLCSCDNNSEIRYWSINNGSC 675 (725)
Q Consensus 601 ~~IafsPd~~~Lasgs~DgtIrvWDl~~~~-~~l~~~~~h~~~V~sl~fsP~g----~~llaSgs~Dg~I~IwDl~t~~~ 675 (725)
.+++|..||.+|+.|-.||+|.+-+..... ..+..-.+..++|++|+|+|.. ..+++..+...++.+|.+. |+.
T Consensus 136 ~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~ 214 (1081)
T KOG1538|consen 136 ICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQ 214 (1081)
T ss_pred EEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-cee
Confidence 889999999999999999999988654433 1222333567899999999963 3478888888899988887 555
Q ss_pred EEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885 676 AGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVE 712 (725)
Q Consensus 676 v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~ 712 (725)
+..-+. .-...|+.+.++|.+++.|++|+.+++|..+
T Consensus 215 Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~ 252 (1081)
T KOG1538|consen 215 IGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD 252 (1081)
T ss_pred ecccccCCCCchhheeccCCcEEEEccCCCceEEEeec
Confidence 543332 4567899999999999999999999999754
No 187
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=1.5e-12 Score=142.69 Aligned_cols=178 Identities=18% Similarity=0.266 Sum_probs=129.3
Q ss_pred ceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCC--EEEEEeCCC-
Q 004885 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADR- 619 (725)
Q Consensus 543 ~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~--~Lasgs~Dg- 619 (725)
+.......+++|++.|+||...|.|.+|++|+.||+|+||.+.++.|++++.- .+.|.||+|+|.++ .|+++-.+.
T Consensus 388 FPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~ 466 (733)
T KOG0650|consen 388 FPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECV 466 (733)
T ss_pred CcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCce
Confidence 44455667899999999999999999999999999999999999999887653 44677777777433 232222111
Q ss_pred --------------------------------------------------------------------------------
Q 004885 620 -------------------------------------------------------------------------------- 619 (725)
Q Consensus 620 -------------------------------------------------------------------------------- 619 (725)
T Consensus 467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~ 546 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK 546 (733)
T ss_pred EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence
Q ss_pred eEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEE
Q 004885 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRIL 698 (725)
Q Consensus 620 tIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Ll 698 (725)
.|.|+++.... ....|....+.|.++.|+|...++|++. -..|+|||+.....+..+.. ...|..++.+|.|..|+
T Consensus 547 ~VliHQLSK~~-sQ~PF~kskG~vq~v~FHPs~p~lfVaT--q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli 623 (733)
T KOG0650|consen 547 SVLIHQLSKRK-SQSPFRKSKGLVQRVKFHPSKPYLFVAT--QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLI 623 (733)
T ss_pred eEEEEeccccc-ccCchhhcCCceeEEEecCCCceEEEEe--ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEE
Confidence 22222222211 1122223446799999999988776544 46799999998777766654 56799999999999999
Q ss_pred EEEcCCeEEEEECCCC-eEEEEEeCCC
Q 004885 699 AAAIENYISILDVETQ-VCRLKLQVSH 724 (725)
Q Consensus 699 a~s~Dg~V~IwDl~tg-~~v~~l~GH~ 724 (725)
+++.|+.+..||+.-+ ++.+++.-|.
T Consensus 624 ~gs~d~k~~WfDldlsskPyk~lr~H~ 650 (733)
T KOG0650|consen 624 LGSYDKKMCWFDLDLSSKPYKTLRLHE 650 (733)
T ss_pred EecCCCeeEEEEcccCcchhHHhhhhh
Confidence 9999999999999755 5666665553
No 188
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.41 E-value=1.2e-13 Score=155.56 Aligned_cols=120 Identities=23% Similarity=0.464 Sum_probs=112.6
Q ss_pred eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004885 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (725)
Q Consensus 546 ~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWD 625 (725)
+.++.+.+|...|+|+.|...|.+|++|+.|..|+||..++..++..+.||.+.|++++.+.+..++++++.|..|++|-
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC
Q 004885 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (725)
Q Consensus 626 l~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~ 671 (725)
+..+. ++..+.+|++.|++|+|+|.. +.+.||++++||.+
T Consensus 261 l~~~~-pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 261 LPDGA-PVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDAR 300 (1113)
T ss_pred cCCCc-hHHHHhccccceeeeccCccc-----cCCCCCceEecccc
Confidence 99988 899999999999999999973 66779999999987
No 189
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.40 E-value=4.2e-12 Score=137.95 Aligned_cols=103 Identities=23% Similarity=0.299 Sum_probs=92.9
Q ss_pred eEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004885 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (725)
Q Consensus 547 ~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl 626 (725)
++..+.--.+.|..++|+|||++||+.+.||.+||||..+.+.+..++..-+...||+|+||+++|++|+.|.-|.||.+
T Consensus 282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred ccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEe
Confidence 33344444568999999999999999999999999999998888888888899999999999999999999999999999
Q ss_pred CCCCeeeEEEecCCCCeEEEEEcc
Q 004885 627 ENPDYSLRTFTGHSTTVMSLDFHP 650 (725)
Q Consensus 627 ~~~~~~l~~~~~h~~~V~sl~fsP 650 (725)
.... .+..-.+|.++|..|+|+|
T Consensus 362 ~erR-VVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 362 EERR-VVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ccce-EEEeccccccceeeEeecc
Confidence 9887 7888899999999999997
No 190
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.39 E-value=6.3e-11 Score=128.02 Aligned_cols=155 Identities=17% Similarity=0.210 Sum_probs=128.0
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004885 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (725)
Q Consensus 550 ~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~ 629 (725)
...+|.+....++.+|+.+.+++|+.|+.|++|+ ..+.+.+.. -..++.|++|+|.+ .++.|...|...|.|.++.
T Consensus 363 ~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~ 438 (626)
T KOG2106|consen 363 TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQ 438 (626)
T ss_pred EEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccc
Confidence 4458999999999999999999999999999999 444444332 35788999999999 9999999999999999985
Q ss_pred CeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC-CeeEEEEe-c-CCCeEEEEEecCCCEEEEEEcCCeE
Q 004885 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFK-C-QSGATQMRFQPRLGRILAAAIENYI 706 (725)
Q Consensus 630 ~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t-~~~v~~~~-~-~~~V~sv~fspdg~~Lla~s~Dg~V 706 (725)
. .+. ++...+.+++++|+|+|. +||.|+.|+.|+||-+.. +....... + ..+|+.+.|++|+.+|.+-+.|-.|
T Consensus 439 ~-lv~-~~~d~~~ls~v~ysp~G~-~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~ei 515 (626)
T KOG2106|consen 439 D-LVT-IHTDNEQLSVVRYSPDGA-FLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEI 515 (626)
T ss_pred e-eEE-EEecCCceEEEEEcCCCC-EEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEE
Confidence 5 343 343488999999999998 888999999999999864 33333222 2 4789999999999999999999999
Q ss_pred EEEEC
Q 004885 707 SILDV 711 (725)
Q Consensus 707 ~IwDl 711 (725)
-.|..
T Consensus 516 LyW~~ 520 (626)
T KOG2106|consen 516 LYWKP 520 (626)
T ss_pred EEEcc
Confidence 99943
No 191
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.39 E-value=6.6e-11 Score=128.30 Aligned_cols=185 Identities=12% Similarity=0.151 Sum_probs=130.4
Q ss_pred EEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCC-
Q 004885 509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTES- 586 (725)
Q Consensus 509 lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs-~Dg~V~IWdl~~- 586 (725)
.++...|+.|.+|..... .+++.+..+. +.+....++++|++++|++++ .++.|.+|+++.
T Consensus 5 y~~~~~~~~I~~~~~~~~----------------g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~ 67 (330)
T PRK11028 5 YIASPESQQIHVWNLNHE----------------GALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADD 67 (330)
T ss_pred EEEcCCCCCEEEEEECCC----------------CceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCC
Confidence 344467899999955211 1223444443 235577899999999887764 478999999863
Q ss_pred CeE--EEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCe---eeEEEecCCCCeEEEEEccCCCeEEEEEe
Q 004885 587 FTV--KSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (725)
Q Consensus 587 ~~~--i~~l~~H~~~V~~IafsPd~~~Lasgs~-DgtIrvWDl~~~~~---~l~~~~~h~~~V~sl~fsP~g~~llaSgs 660 (725)
++. +.... .......|+|+|++++|++++. ++.|.+||+++... .+..+. +.....+++|+|+++.++++..
T Consensus 68 g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~ 145 (330)
T PRK11028 68 GALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCL 145 (330)
T ss_pred CceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeC
Confidence 332 22222 2345678999999999988875 88999999975331 222222 2345788899999998888888
Q ss_pred CCCcEEEEECCCCeeEE-------EEecCCCeEEEEEecCCCEEEEEEc-CCeEEEEECC
Q 004885 661 NNSEIRYWSINNGSCAG-------VFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVE 712 (725)
Q Consensus 661 ~Dg~I~IwDl~t~~~v~-------~~~~~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~ 712 (725)
.++.|++||+.+...+. .+........+.|+|++++++++.. ++.|.+||+.
T Consensus 146 ~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 146 KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 88999999998633221 1222456788999999999988876 8999999997
No 192
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=2.6e-12 Score=140.90 Aligned_cols=155 Identities=17% Similarity=0.273 Sum_probs=131.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004885 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (725)
Q Consensus 553 ~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~ 632 (725)
-..+.|.++.|+|...+|++++. ..|+|||+.....+..+......|..+++||.|..|+.++.|+.++++|+.-...+
T Consensus 564 kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskP 642 (733)
T KOG0650|consen 564 KSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKP 642 (733)
T ss_pred hcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcch
Confidence 34566999999999999988874 58999999887777777777889999999999999999999999999999987778
Q ss_pred eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC------CCeeEE---EEec-----CCCeEEEEEecCCCEEE
Q 004885 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN------NGSCAG---VFKC-----QSGATQMRFQPRLGRIL 698 (725)
Q Consensus 633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~------t~~~v~---~~~~-----~~~V~sv~fspdg~~Ll 698 (725)
..++.-|...|++|+||+.-. +||+|+.||++.||--. ....+. .+.+ ..+|..++|+|.-.+|+
T Consensus 643 yk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLf 721 (733)
T KOG0650|consen 643 YKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLF 721 (733)
T ss_pred hHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEE
Confidence 889999999999999999877 99999999999988432 222232 2322 34588899999999999
Q ss_pred EEEcCCeEEEE
Q 004885 699 AAAIENYISIL 709 (725)
Q Consensus 699 a~s~Dg~V~Iw 709 (725)
+++.||+|++|
T Consensus 722 sAGAd~tirlf 732 (733)
T KOG0650|consen 722 SAGADGTIRLF 732 (733)
T ss_pred ecCCCceEEee
Confidence 99999999998
No 193
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=1.4e-11 Score=138.82 Aligned_cols=162 Identities=17% Similarity=0.230 Sum_probs=117.7
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeE--EEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEE
Q 004885 549 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVR 622 (725)
Q Consensus 549 ~~l~~H~~~V~~i~fSpdg~~LaSgs~D---g~V~IWdl~~~~~--i~~l~~H~~~V~~IafsPd~~~Lasgs-~DgtIr 622 (725)
..+..|...|.+.+|||||+.|+.++.+ ..|++||+.+++. +..+.+| ..+++|+||+++|+.++ .++.+.
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~ 273 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLN 273 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEE
Confidence 3456677889999999999999887754 3699999988754 3333433 44789999999887764 678666
Q ss_pred EE--ECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCC-eeEEEEecCCCeEEEEEecCCCEEEE
Q 004885 623 VW--DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILA 699 (725)
Q Consensus 623 vW--Dl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~-~~v~~~~~~~~V~sv~fspdg~~Lla 699 (725)
|| |+.++. +..+..+...+.++.|+|+|+.++++++.++.+.||+++.. .....+.+. . .++.|+|||++|++
T Consensus 274 Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~-~-~~~~~SpDG~~ia~ 349 (429)
T PRK01742 274 IYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGR-G-YSAQISADGKTLVM 349 (429)
T ss_pred EEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCC-C-CCccCCCCCCEEEE
Confidence 65 555544 55666677778899999999988877777888888876532 222333222 2 56789999999988
Q ss_pred EEcCCeEEEEECCCCeEEE
Q 004885 700 AAIENYISILDVETQVCRL 718 (725)
Q Consensus 700 ~s~Dg~V~IwDl~tg~~v~ 718 (725)
++.++ |.+||+.++++..
T Consensus 350 ~~~~~-i~~~Dl~~g~~~~ 367 (429)
T PRK01742 350 INGDN-VVKQDLTSGSTEV 367 (429)
T ss_pred EcCCC-EEEEECCCCCeEE
Confidence 87755 6669999986543
No 194
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=2.4e-12 Score=136.89 Aligned_cols=161 Identities=22% Similarity=0.224 Sum_probs=126.7
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEe-
Q 004885 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT- 637 (725)
Q Consensus 559 ~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~- 637 (725)
.+++|+.+|..|++++.||++|||+..+...+.....|...|.+++|+||+++|++.+.| ..+||+++++. ++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~-~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA-ALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc-hhhhcCC
Confidence 789999999999999999999999988877777788899999999999999999999999 89999999985 454443
Q ss_pred -cCCCCeEEEEEccCC---CeEEE-EEeCCCcEEEEECCCCee---E---EEEecCCCeEEEEEecCCCEEEEEEcCCeE
Q 004885 638 -GHSTTVMSLDFHPSK---EDLLC-SCDNNSEIRYWSINNGSC---A---GVFKCQSGATQMRFQPRLGRILAAAIENYI 706 (725)
Q Consensus 638 -~h~~~V~sl~fsP~g---~~lla-Sgs~Dg~I~IwDl~t~~~---v---~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V 706 (725)
.-......+.|+-++ ..+++ .....+.|+.||+...+. + ..+.....|++++++++|++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 223346677887765 32222 233445677777653222 1 111225689999999999999999999999
Q ss_pred EEEECCCCeEEEEEe
Q 004885 707 SILDVETQVCRLKLQ 721 (725)
Q Consensus 707 ~IwDl~tg~~v~~l~ 721 (725)
.|+++.+-++++-++
T Consensus 306 ai~~~~~lq~~~~vk 320 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVK 320 (398)
T ss_pred EEEEeceeeeeEeeh
Confidence 999999998888775
No 195
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.37 E-value=4.7e-12 Score=137.20 Aligned_cols=162 Identities=18% Similarity=0.255 Sum_probs=120.6
Q ss_pred EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004885 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 587 (725)
Q Consensus 508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~ 587 (725)
.++.++.||++.+.. ...+..+.+.+|.+.|.|-.|+|||.-|+++++||.|+||.- +|
T Consensus 77 ~~~i~s~DGkf~il~--------------------k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sG 135 (737)
T KOG1524|consen 77 TLLICSNDGRFVILN--------------------KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SG 135 (737)
T ss_pred eEEEEcCCceEEEec--------------------ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cc
Confidence 455567788887771 112334567799999999999999999999999999999984 44
Q ss_pred eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEE
Q 004885 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667 (725)
Q Consensus 588 ~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~I 667 (725)
-...++.....+|+|++|.|+...++-|. .+.+.|=-+.-.. .+...+.|.+-|.+++|++..+ ++++|+.|-..+|
T Consensus 136 MLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~-k~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfKv 212 (737)
T KOG1524|consen 136 MLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANS-KIIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFKI 212 (737)
T ss_pred hHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeeccccc-ceeEEeccCcEEEEeecCcccc-ceeecCCceeEEe
Confidence 44445555678999999999877665554 3445555555444 5677889999999999999976 8889999999999
Q ss_pred EECCCCeeEEEEecCCCeEEEEEecC
Q 004885 668 WSINNGSCAGVFKCQSGATQMRFQPR 693 (725)
Q Consensus 668 wDl~t~~~v~~~~~~~~V~sv~fspd 693 (725)
||.........-.+..+|++++|.|+
T Consensus 213 WD~~G~~Lf~S~~~ey~ITSva~npd 238 (737)
T KOG1524|consen 213 WDAQGANLFTSAAEEYAITSVAFNPE 238 (737)
T ss_pred ecccCcccccCChhccceeeeeeccc
Confidence 99864333333334556666666666
No 196
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=1.4e-10 Score=130.67 Aligned_cols=163 Identities=13% Similarity=0.141 Sum_probs=114.0
Q ss_pred CeEEEEEcCCCCEEEEE-eCCC--cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEE--ECCCCC
Q 004885 557 KVESCHFSPDGKLLATG-GHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVW--DTENPD 630 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSg-s~Dg--~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-DgtIrvW--Dl~~~~ 630 (725)
.+.+++|+|||+.|+.. +.++ .|++||+++++... +..+...+....|+||++.|+..+. ++...|| |+.++.
T Consensus 244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~ 322 (429)
T PRK03629 244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA 322 (429)
T ss_pred CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC
Confidence 35568999999988754 4454 58899998876654 4444556789999999998876665 3444444 666554
Q ss_pred eeeEEEecCCCCeEEEEEccCCCeEEEEEeCC--CcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCe---
Q 004885 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY--- 705 (725)
Q Consensus 631 ~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D--g~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~--- 705 (725)
...+..+...+.+++|+|+|+.+++++..+ ..|++||+.++.... +..........|+|||.+|+.++.++.
T Consensus 323 --~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~ 399 (429)
T PRK03629 323 --PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDTFLDETPSIAPNGTMVIYSSSQGMGSV 399 (429)
T ss_pred --eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCCCCCCCceECCCCCEEEEEEcCCCceE
Confidence 344444445567899999999776665544 358889998886543 333233457889999999999888754
Q ss_pred EEEEECCCCeEEEEEeCCC
Q 004885 706 ISILDVETQVCRLKLQVSH 724 (725)
Q Consensus 706 V~IwDl~tg~~v~~l~GH~ 724 (725)
+.++++ +|+....+.+|.
T Consensus 400 l~~~~~-~G~~~~~l~~~~ 417 (429)
T PRK03629 400 LNLVST-DGRFKARLPATD 417 (429)
T ss_pred EEEEEC-CCCCeEECccCC
Confidence 677787 466667777764
No 197
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.37 E-value=1.1e-11 Score=127.78 Aligned_cols=157 Identities=15% Similarity=0.231 Sum_probs=131.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004885 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~---~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~ 630 (725)
-..+|+|.+|++|+..+|++...+.|.||.... .+..+++..|...|++|+|.|..+.|++|+.|..-+||....+.
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 356799999999999999999999999998754 56889999999999999999999999999999999999994433
Q ss_pred --eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-----cCCCeEEEEEecCCCEEEEEEcC
Q 004885 631 --YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----CQSGATQMRFQPRLGRILAAAIE 703 (725)
Q Consensus 631 --~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~-----~~~~V~sv~fspdg~~Lla~s~D 703 (725)
.+...+..+...+++|.|+|..+ .|++|+....|.||-++...--..-+ ....|++++|+|++-.|++|+.|
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D 167 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD 167 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence 23455666788999999999977 77889888899999887543221111 25679999999998889999999
Q ss_pred CeEEEEEC
Q 004885 704 NYISILDV 711 (725)
Q Consensus 704 g~V~IwDl 711 (725)
+..+||..
T Consensus 168 ~k~rVfSa 175 (361)
T KOG1523|consen 168 GKCRVFSA 175 (361)
T ss_pred cceeEEEE
Confidence 99999964
No 198
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.35 E-value=1.4e-10 Score=125.76 Aligned_cols=156 Identities=15% Similarity=0.214 Sum_probs=109.9
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEE-------EeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEC
Q 004885 556 SKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKS-------TLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDT 626 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs-~Dg~V~IWdl~~~~~i~-------~l~~H~~~V~~IafsPd~~~Lasgs~-DgtIrvWDl 626 (725)
....+++|+|+++++++++ .++.|.+||+++...+. .+. .......++|+|++++|++++. +++|.+||+
T Consensus 126 ~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~ 204 (330)
T PRK11028 126 EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQL 204 (330)
T ss_pred CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEE
Confidence 3467889999999886554 56899999997633221 111 1234678999999999988876 899999999
Q ss_pred CCC--C-eeeEEEecC------CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe----eEEEEecCCCeEEEEEecC
Q 004885 627 ENP--D-YSLRTFTGH------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS----CAGVFKCQSGATQMRFQPR 693 (725)
Q Consensus 627 ~~~--~-~~l~~~~~h------~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~----~v~~~~~~~~V~sv~fspd 693 (725)
+.. . ..+..+..+ ......+.|+|++++++++...++.|.+|++.... .+..+........++|+|+
T Consensus 205 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~d 284 (330)
T PRK11028 205 KDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHS 284 (330)
T ss_pred eCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCC
Confidence 742 2 122222211 12234688999999777766668899999996432 2333333345678999999
Q ss_pred CCEEEEEEc-CCeEEEEECC
Q 004885 694 LGRILAAAI-ENYISILDVE 712 (725)
Q Consensus 694 g~~Lla~s~-Dg~V~IwDl~ 712 (725)
|++|+++.. +++|.||++.
T Consensus 285 g~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 285 GKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCEEEEEEccCCcEEEEEEc
Confidence 999998876 8999999874
No 199
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=1.5e-10 Score=121.04 Aligned_cols=220 Identities=15% Similarity=0.207 Sum_probs=146.7
Q ss_pred cccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecC
Q 004885 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (725)
Q Consensus 474 l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 553 (725)
+....-+.+++++|.|-+.. -++.|+. .-|.+|....... ..+.... -+.-...+...++
T Consensus 135 Lks~sQrnvtclawRPlsas--------------elavgCr-~gIciW~~s~tln----~~r~~~~-~s~~~~qvl~~pg 194 (445)
T KOG2139|consen 135 LKSVSQRNVTCLAWRPLSAS--------------ELAVGCR-AGICIWSDSRTLN----ANRNIRM-MSTHHLQVLQDPG 194 (445)
T ss_pred ecchhhcceeEEEeccCCcc--------------eeeeeec-ceeEEEEcCcccc----ccccccc-ccccchhheeCCC
Confidence 33444567899999997762 3444444 5688893322211 1110000 0111123344456
Q ss_pred CCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004885 554 STSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSgs~-Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~ 632 (725)
| ..|+++.|.+||..+++++. |..|.|||.+++..+.....--+.++-+.|+||+.+|+.+..|+..++|.......+
T Consensus 195 h-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~ 273 (445)
T KOG2139|consen 195 H-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTK 273 (445)
T ss_pred C-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhccccee
Confidence 6 67999999999999999886 568999999998776555444678999999999999999999999999977765534
Q ss_pred eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe-------------eEEEEe----------cCCCeEEEE
Q 004885 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-------------CAGVFK----------CQSGATQMR 689 (725)
Q Consensus 633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~-------------~v~~~~----------~~~~V~sv~ 689 (725)
.+...+ .+.|...+|+|+|..+|++++..-.|+-....... .+..+. ..+++.+++
T Consensus 274 erw~lg-sgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~la 352 (445)
T KOG2139|consen 274 ERWILG-SGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLA 352 (445)
T ss_pred cceecc-CCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceee
Confidence 444443 35899999999999999988755444333222110 011110 135689999
Q ss_pred EecCCCEEEEEEcC--------CeEEEEECCCCe
Q 004885 690 FQPRLGRILAAAIE--------NYISILDVETQV 715 (725)
Q Consensus 690 fspdg~~Lla~s~D--------g~V~IwDl~tg~ 715 (725)
|+|.|.+|++.-.. ..|.+||.+..-
T Consensus 353 wDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp 386 (445)
T KOG2139|consen 353 WDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP 386 (445)
T ss_pred ECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence 99999999887542 357788877653
No 200
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=1.4e-10 Score=130.65 Aligned_cols=167 Identities=17% Similarity=0.146 Sum_probs=117.5
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEEC
Q 004885 551 IPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDT 626 (725)
Q Consensus 551 l~~H~~~V~~i~fSpdg~~LaSgs~D---g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~La-sgs~DgtIrvWDl 626 (725)
+..+...|.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+.+.+|+||++.|+ +.+.++...||.+
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 269 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV 269 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence 44567789999999999999887653 359999998876543 333345667899999998876 5677887777765
Q ss_pred CCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEE--CCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCC
Q 004885 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS--INNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN 704 (725)
Q Consensus 627 ~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwD--l~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg 704 (725)
+.....+..+..+...+..+.|+|+|+.+++++..++...||. +.++................|+|||++|+.++.++
T Consensus 270 d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~ 349 (427)
T PRK02889 270 NADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVG 349 (427)
T ss_pred ECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccC
Confidence 4322235556556666778899999998777666556666664 45554333322233455689999999998877654
Q ss_pred ---eEEEEECCCCeEEE
Q 004885 705 ---YISILDVETQVCRL 718 (725)
Q Consensus 705 ---~V~IwDl~tg~~v~ 718 (725)
.|.+||+.+++...
T Consensus 350 g~~~I~v~d~~~g~~~~ 366 (427)
T PRK02889 350 GAFKLYVQDLATGQVTA 366 (427)
T ss_pred CcEEEEEEECCCCCeEE
Confidence 69999999886543
No 201
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=2.8e-11 Score=126.85 Aligned_cols=164 Identities=17% Similarity=0.220 Sum_probs=131.9
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC------CeEEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCeE
Q 004885 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------FTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTV 621 (725)
Q Consensus 549 ~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~------~~~i~~l~~-H~~~V~~IafsPd~~~Lasgs~DgtI 621 (725)
+.+.+|.+-|.+|.|+.++++|++|+.|..++||+++. .+++..... |...|.|++|....++|++|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 45679999999999999999999999999999999853 455655543 55899999999999999999999999
Q ss_pred EEEECCCCCeeeEEEec--CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe----eEEEEecCCCeEEEEEecCCC
Q 004885 622 RVWDTENPDYSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS----CAGVFKCQSGATQMRFQPRLG 695 (725)
Q Consensus 622 rvWDl~~~~~~l~~~~~--h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~----~v~~~~~~~~V~sv~fspdg~ 695 (725)
.+.|+++.. .+..+.. ..+.|..+..+|..+ +|++.+.++.|.|||++... ++..........++.|+|...
T Consensus 130 I~HDiEt~q-si~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 130 IKHDIETKQ-SIYVANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred Eeeecccce-eeeeecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 999999987 4555432 235899999999955 77788889999999998654 222223356788999999876
Q ss_pred EEEE-EEcCCeEEEEECCCC
Q 004885 696 RILA-AAIENYISILDVETQ 714 (725)
Q Consensus 696 ~Lla-~s~Dg~V~IwDl~tg 714 (725)
.|++ .+..+.+.|||++..
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred eeEEeccccCCCCceeeccc
Confidence 6554 455788999999865
No 202
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=4.1e-10 Score=127.13 Aligned_cols=164 Identities=13% Similarity=0.122 Sum_probs=122.8
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEeCCCe--EE
Q 004885 549 QLIPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRT--VR 622 (725)
Q Consensus 549 ~~l~~H~~~V~~i~fSpdg~~LaSgs~---Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~La-sgs~Dgt--Ir 622 (725)
..+..|...|.+.+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+.+.+|+||++.|+ +.+.++. |.
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence 345577788999999999998887764 468999999887654 4455667788999999998775 5555554 77
Q ss_pred EEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEE
Q 004885 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA 700 (725)
Q Consensus 623 vWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg--~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~ 700 (725)
+||+.++. +..+..+.......+|+|+|+.++++...+| .|++||+..+...........+..+.|+|+|++|+..
T Consensus 274 ~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 274 TMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFT 351 (435)
T ss_pred EEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEE
Confidence 77888765 4556666666788999999997776665444 5888898876655444444567788999999999887
Q ss_pred EcC---CeEEEEECCCCe
Q 004885 701 AIE---NYISILDVETQV 715 (725)
Q Consensus 701 s~D---g~V~IwDl~tg~ 715 (725)
..+ ..|.+||+.++.
T Consensus 352 ~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 352 KQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred EcCCCceEEEEEECCCCc
Confidence 653 468899986553
No 203
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.31 E-value=7.6e-11 Score=128.31 Aligned_cols=160 Identities=16% Similarity=0.242 Sum_probs=122.6
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeEEEEec----cCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCC---------
Q 004885 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD--------- 630 (725)
Q Consensus 565 pdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~----~H~~~V~~IafsPd-~~~Lasgs~DgtIrvWDl~~~~--------- 630 (725)
+++--|++|-.-|-|.+.|....+..+.+. -....|+||.|-|. ...++.+-.+|.+.+||.+...
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 355567788778888888865422221111 12478999999995 4566677779999999764210
Q ss_pred ------e------------eeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEe
Q 004885 631 ------Y------------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQ 691 (725)
Q Consensus 631 ------~------------~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fs 691 (725)
. ++..+.--.+.|..++|+|||. +||+.+.||.+||||..+.+++..++. -++..||+|+
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGK-YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS 341 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCc-eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence 0 1222222345789999999998 677889999999999999888777765 6889999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885 692 PRLGRILAAAIENYISILDVETQVCRLKLQVSHS 725 (725)
Q Consensus 692 pdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s 725 (725)
|||+||++|+.|..|.||.+..+++|.+=+||.+
T Consensus 342 PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkS 375 (636)
T KOG2394|consen 342 PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKS 375 (636)
T ss_pred CCccEEEecCCcceEEEEEeccceEEEecccccc
Confidence 9999999999999999999999999999999975
No 204
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.30 E-value=1.8e-10 Score=115.87 Aligned_cols=119 Identities=18% Similarity=0.288 Sum_probs=91.9
Q ss_pred CCCeEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCC
Q 004885 555 TSKVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENP 629 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSg--s~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D---gtIrvWDl~~~ 629 (725)
.+.|.+++|+|+|+.||++ ..++.|.+||++ .+.+..+. ...+..|.|+|+|++|++++.+ |.|.+||+++.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 3569999999999987654 457799999996 56666664 5678899999999999998754 67999999976
Q ss_pred CeeeEEEecCCCCeEEEEEccCCCeEEEEEe-----CCCcEEEEECCCCeeEEEEe
Q 004885 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFK 680 (725)
Q Consensus 630 ~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs-----~Dg~I~IwDl~t~~~v~~~~ 680 (725)
+ .+..+. | ..++.++|+|+|++++.+.+ .|..++||+.. |+.+....
T Consensus 136 ~-~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 136 K-KISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred E-Eeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 6 455443 3 34789999999997765554 37889999985 66665543
No 205
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.30 E-value=2.5e-11 Score=131.66 Aligned_cols=180 Identities=11% Similarity=0.149 Sum_probs=133.9
Q ss_pred CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (725)
Q Consensus 478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (725)
+...+.+-.|++||+ -+.+.+.||.|++|.- .+. ...++.....+
T Consensus 103 H~~A~~~gRW~~dGt---------------gLlt~GEDG~iKiWSr-----------------sGM---LRStl~Q~~~~ 147 (737)
T KOG1524|consen 103 HAAAISSGRWSPDGA---------------GLLTAGEDGVIKIWSR-----------------SGM---LRSTVVQNEES 147 (737)
T ss_pred hhhhhhhcccCCCCc---------------eeeeecCCceEEEEec-----------------cch---HHHHHhhcCce
Confidence 344556667777776 6788889999999921 111 11233345567
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEe
Q 004885 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~ 637 (725)
|+|++|.|+.+.++.|- .+.+.|=.+.....+-.++.|.+-|.+++|++..+.+++|+.|...+|||.... .+..-.
T Consensus 148 v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~--~Lf~S~ 224 (737)
T KOG1524|consen 148 IRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA--NLFTSA 224 (737)
T ss_pred eEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc--ccccCC
Confidence 99999999887666653 356777777666667788999999999999999999999999999999998743 466667
Q ss_pred cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 004885 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 708 (725)
Q Consensus 638 ~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~I 708 (725)
.|..+|++|+|.|+ . +++.++. .++|+=.. ..+.|..++|++||..+.+|+..|.|.+
T Consensus 225 ~~ey~ITSva~npd-~-~~~v~S~-nt~R~~~p----------~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 225 AEEYAITSVAFNPE-K-DYLLWSY-NTARFSSP----------RVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred hhccceeeeeeccc-c-ceeeeee-eeeeecCC----------CccceEEEEEcCCCceeeccccCceEEE
Confidence 88999999999999 3 5555553 35552111 2467999999999998888877776543
No 206
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=1.5e-10 Score=122.27 Aligned_cols=199 Identities=16% Similarity=0.271 Sum_probs=152.9
Q ss_pred CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC-EEEEEeCC--CcE
Q 004885 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHD--KKA 579 (725)
Q Consensus 503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~-~LaSgs~D--g~V 579 (725)
.-.+.+|.+|-.+|.+.+|........ . .....+..+ ..+..+.-++... ++|+|+.. ..+
T Consensus 112 ~~~dg~Litc~~sG~l~~~~~k~~d~h------------s---s~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~l 175 (412)
T KOG3881|consen 112 KLADGTLITCVSSGNLQVRHDKSGDLH------------S---SKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINEL 175 (412)
T ss_pred hhcCCEEEEEecCCcEEEEeccCCccc------------c---ccceeeecC-CceeeeccCCCCCceEecCchhcccce
Confidence 344557788888899999944322100 0 111112222 4466677776444 56668888 889
Q ss_pred EEEECCCCeEEEEecc---------CCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEE
Q 004885 580 VLWCTESFTVKSTLEE---------HTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648 (725)
Q Consensus 580 ~IWdl~~~~~i~~l~~---------H~~~V~~IafsPd--~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~f 648 (725)
.|||++..+.+..-+. -.-+++++.|-+. ...|+++..-+.||+||.+....++..|.-...+|+++..
T Consensus 176 kiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l 255 (412)
T KOG3881|consen 176 KIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGL 255 (412)
T ss_pred eeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeee
Confidence 9999988755544321 1245778999887 7889999999999999999888889999888899999999
Q ss_pred ccCCCeEEEEEeCCCcEEEEECCCCeeEEE-Eec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE
Q 004885 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL 718 (725)
Q Consensus 649 sP~g~~llaSgs~Dg~I~IwDl~t~~~v~~-~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~ 718 (725)
.|.++ +++++..-+.+..||++.++.+.. ++. .+.|++|..+|.+.++++|+-|..|+|+|+.+.+.++
T Consensus 256 ~p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 256 TPSGN-FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred cCCCc-EEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhh
Confidence 99998 666888899999999999988877 555 7889999999999999999999999999999965543
No 207
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=1e-10 Score=122.25 Aligned_cols=186 Identities=15% Similarity=0.172 Sum_probs=131.6
Q ss_pred CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecC-CCC
Q 004885 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA-STS 556 (725)
Q Consensus 478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-H~~ 556 (725)
...+...++|+++-. -++.+..|..|++|...+ +....++. ...
T Consensus 97 s~~dlr~~aWhqH~~---------------~fava~nddvVriy~kss--------------------t~pt~Lks~sQr 141 (445)
T KOG2139|consen 97 SEIDLRGVAWHQHII---------------AFAVATNDDVVRIYDKSS--------------------TCPTKLKSVSQR 141 (445)
T ss_pred hhcceeeEeechhhh---------------hhhhhccCcEEEEeccCC--------------------CCCceecchhhc
Confidence 455777888887433 457788999999993322 11122222 234
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC----eE----------EEEeccCCCCeEEEEEcCCCCEEEEEeC-CCe
Q 004885 557 KVESCHFSP-DGKLLATGGHDKKAVLWCTESF----TV----------KSTLEEHTQWITDVRFSPSLSRLATSSA-DRT 620 (725)
Q Consensus 557 ~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~----~~----------i~~l~~H~~~V~~IafsPd~~~Lasgs~-Dgt 620 (725)
.|+|++|-| .++.|++|+..| |.||..+.. .. +....+| .+|+++.|.+|+..+++++. |..
T Consensus 142 nvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsss 219 (445)
T KOG2139|consen 142 NVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSS 219 (445)
T ss_pred ceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcce
Confidence 599999999 455788887654 899976431 11 1122445 68999999999999999987 678
Q ss_pred EEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC-CCeeEEEEecCCCeEEEEEecCCCEEEE
Q 004885 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKCQSGATQMRFQPRLGRILA 699 (725)
Q Consensus 621 IrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~-t~~~v~~~~~~~~V~sv~fspdg~~Lla 699 (725)
|.|||.+++. ++.....-.+.++-+.|+||+.++|| +.-|+..++|... +..+.+-.-..+.|...+|+|+|.+|+.
T Consensus 220 i~iWdpdtg~-~~pL~~~glgg~slLkwSPdgd~lfa-At~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf 297 (445)
T KOG2139|consen 220 IMIWDPDTGQ-KIPLIPKGLGGFSLLKWSPDGDVLFA-ATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLF 297 (445)
T ss_pred EEEEcCCCCC-cccccccCCCceeeEEEcCCCCEEEE-ecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEE
Confidence 9999999987 34433334467889999999997664 5559999999554 4455555555678999999999998776
Q ss_pred EEc
Q 004885 700 AAI 702 (725)
Q Consensus 700 ~s~ 702 (725)
+..
T Consensus 298 ~~s 300 (445)
T KOG2139|consen 298 ACS 300 (445)
T ss_pred EEc
Confidence 554
No 208
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=1.2e-10 Score=133.24 Aligned_cols=194 Identities=19% Similarity=0.176 Sum_probs=149.9
Q ss_pred EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCC---CEEEEEeCCCcEEEEEC
Q 004885 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG---KLLATGGHDKKAVLWCT 584 (725)
Q Consensus 508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg---~~LaSgs~Dg~V~IWdl 584 (725)
++... .+..|.+| ...+...++.+++|...++.+.+.|.. .++++++.||+|++||.
T Consensus 30 ~l~~~-~~~~V~Vy-------------------S~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~ 89 (792)
T KOG1963|consen 30 FLFLC-TGNFVKVY-------------------STATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDW 89 (792)
T ss_pred EEEEe-eCCEEEEE-------------------ecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecC
Confidence 44433 55788999 333335566889999999999998844 36789999999999987
Q ss_pred CCCeEEEEe-----------------------------------------------------------------------
Q 004885 585 ESFTVKSTL----------------------------------------------------------------------- 593 (725)
Q Consensus 585 ~~~~~i~~l----------------------------------------------------------------------- 593 (725)
..+..++++
T Consensus 90 ~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~ 169 (792)
T KOG1963|consen 90 SDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDN 169 (792)
T ss_pred CCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEc
Confidence 544332211
Q ss_pred --------------------------------ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC---CCeeeEEEec
Q 004885 594 --------------------------------EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---PDYSLRTFTG 638 (725)
Q Consensus 594 --------------------------------~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~---~~~~l~~~~~ 638 (725)
..|...++|+++||++++++++..||.|.+|.--. .....+.++-
T Consensus 170 ~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW 249 (792)
T KOG1963|consen 170 NSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW 249 (792)
T ss_pred CCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe
Confidence 01455678999999999999999999999995332 2335678889
Q ss_pred CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE
Q 004885 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL 718 (725)
Q Consensus 639 h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~ 718 (725)
|...|++++|+++|.+++ +|+.++.+.+|.+.+++....-+..+.|..+.|+||+.++.+...|+.|.+..+.+-+...
T Consensus 250 H~~~V~~L~fS~~G~~Ll-SGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~ 328 (792)
T KOG1963|consen 250 HHDEVNSLSFSSDGAYLL-SGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKS 328 (792)
T ss_pred cccccceeEEecCCceEe-ecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhh
Confidence 999999999999999555 9999999999999998843333347899999999999999999999999999886655544
Q ss_pred EEeC
Q 004885 719 KLQV 722 (725)
Q Consensus 719 ~l~G 722 (725)
++.|
T Consensus 329 tIsg 332 (792)
T KOG1963|consen 329 TISG 332 (792)
T ss_pred hccC
Confidence 4443
No 209
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=4.5e-10 Score=126.52 Aligned_cols=164 Identities=15% Similarity=0.168 Sum_probs=109.5
Q ss_pred CCCeEEEEEcCCCCEEE-EEeCCCcEEEEE--CCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEC--CC
Q 004885 555 TSKVESCHFSPDGKLLA-TGGHDKKAVLWC--TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDT--EN 628 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~La-Sgs~Dg~V~IWd--l~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-DgtIrvWDl--~~ 628 (725)
.+.+.+.+|+|||+.|+ +.+.++...||. +..+. ...+..+...+....|+||+++|+..+. ++...||.+ .+
T Consensus 239 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~ 317 (427)
T PRK02889 239 KGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG 317 (427)
T ss_pred CCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC
Confidence 34567899999999776 567788766665 44443 4556656666778899999998876554 566666655 44
Q ss_pred CCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCC--
Q 004885 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN-- 704 (725)
Q Consensus 629 ~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg--~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg-- 704 (725)
+. ...+..+.......+|+|+|+++++++..++ .|++||+.++...... .......+.|+|||+.|+.++.++
T Consensus 318 g~--~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-~~~~~~~p~~spdg~~l~~~~~~~g~ 394 (427)
T PRK02889 318 GA--AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT-DTTRDESPSFAPNGRYILYATQQGGR 394 (427)
T ss_pred Cc--eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-CCCCccCceECCCCCEEEEEEecCCC
Confidence 33 2222222334556899999997665554333 6999999987654333 333457889999999988887643
Q ss_pred -eEEEEECCCCeEEEEEeCC
Q 004885 705 -YISILDVETQVCRLKLQVS 723 (725)
Q Consensus 705 -~V~IwDl~tg~~v~~l~GH 723 (725)
.+.+.++ +|...+.+..+
T Consensus 395 ~~l~~~~~-~g~~~~~l~~~ 413 (427)
T PRK02889 395 SVLAAVSS-DGRIKQRLSVQ 413 (427)
T ss_pred EEEEEEEC-CCCceEEeecC
Confidence 4667777 46666655443
No 210
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=3.1e-10 Score=128.05 Aligned_cols=165 Identities=21% Similarity=0.191 Sum_probs=120.7
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEeCCC--eEEE
Q 004885 550 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADR--TVRV 623 (725)
Q Consensus 550 ~l~~H~~~V~~i~fSpdg~~LaSgs~D---g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~La-sgs~Dg--tIrv 623 (725)
.+..|...|.+.+|+|||+.|+.++.+ ..|++||+.+++... +..+.+.+.+++|+||++.|+ +.+.++ .|.+
T Consensus 198 ~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~ 276 (433)
T PRK04922 198 TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYV 276 (433)
T ss_pred EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEE
Confidence 345667789999999999999887743 369999998876543 333445566889999998775 455555 6999
Q ss_pred EECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc--EEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEE
Q 004885 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 701 (725)
Q Consensus 624 WDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~--I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s 701 (725)
||+.++. +..+..+......++|+|+|+.++++...++. |+++|+.++..............++|+|||++|+..+
T Consensus 277 ~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~ 354 (433)
T PRK04922 277 MDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVH 354 (433)
T ss_pred EECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEE
Confidence 9998876 45555565566789999999977777665555 7777887776544333334455789999999988876
Q ss_pred cCC---eEEEEECCCCeEE
Q 004885 702 IEN---YISILDVETQVCR 717 (725)
Q Consensus 702 ~Dg---~V~IwDl~tg~~v 717 (725)
.++ .|.+||+.+++..
T Consensus 355 ~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 355 GSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred CCCCceeEEEEECCCCCeE
Confidence 543 6999999888654
No 211
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=5.7e-10 Score=125.90 Aligned_cols=162 Identities=17% Similarity=0.164 Sum_probs=112.0
Q ss_pred CCCeEEEEEcCCCCEEE-EEeCCC--cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCe--EEEEECCC
Q 004885 555 TSKVESCHFSPDGKLLA-TGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRT--VRVWDTEN 628 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~La-Sgs~Dg--~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-Dgt--IrvWDl~~ 628 (725)
.+.+.+++|+|||+.|+ +.+.++ .|++||+.+++.. .+..+......++|+||+++|+.++. ++. |.++|+.+
T Consensus 247 ~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~ 325 (433)
T PRK04922 247 RGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG 325 (433)
T ss_pred CCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 34456889999999765 555555 5999999887654 45556666678999999998877664 444 66667766
Q ss_pred CCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcC---
Q 004885 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE--- 703 (725)
Q Consensus 629 ~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg--~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~D--- 703 (725)
+. ...+..+......++|+|+|+.++++...++ .|.+||+.++... .+........+.|+|||++|+..+.+
T Consensus 326 g~--~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~ 402 (433)
T PRK04922 326 GS--AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGR 402 (433)
T ss_pred CC--eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCc
Confidence 55 2333223344557899999997766554333 5999999887755 33333345678999999988877763
Q ss_pred CeEEEEECCCCeEEEEEe
Q 004885 704 NYISILDVETQVCRLKLQ 721 (725)
Q Consensus 704 g~V~IwDl~tg~~v~~l~ 721 (725)
..|.++|+.. .....+.
T Consensus 403 ~~L~~~~~~g-~~~~~l~ 419 (433)
T PRK04922 403 GVLAAVSTDG-RVRQRLV 419 (433)
T ss_pred eEEEEEECCC-CceEEcc
Confidence 4688888854 4445444
No 212
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=4e-11 Score=124.51 Aligned_cols=145 Identities=19% Similarity=0.341 Sum_probs=114.0
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCe-eeEEEecCC-CCe
Q 004885 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDY-SLRTFTGHS-TTV 643 (725)
Q Consensus 568 ~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsP--d~~~Lasgs~DgtIrvWDl~~~~~-~l~~~~~h~-~~V 643 (725)
..+|++...|.|++||..++..+..|++|...++.++|.. ....+.+|+.||+||+||++.... ....+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688888899999999999999999999999999999977 456789999999999999997652 334455555 344
Q ss_pred EEEEEccCCCeEEEEEe----CCCcEEEEECCCCee-EEEEe--cCCCeEEEEEecCCC-EEEEEEcCCeEEEEECCC
Q 004885 644 MSLDFHPSKEDLLCSCD----NNSEIRYWSINNGSC-AGVFK--CQSGATQMRFQPRLG-RILAAAIENYISILDVET 713 (725)
Q Consensus 644 ~sl~fsP~g~~llaSgs----~Dg~I~IwDl~t~~~-v~~~~--~~~~V~sv~fspdg~-~Lla~s~Dg~V~IwDl~t 713 (725)
.+++..-.+. ++++|. .+-.|.+||+|.... +..+. |...|++++|+|... .|++|+.||.|.|||++.
T Consensus 121 ~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 121 ICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK 197 (376)
T ss_pred eEeeccCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence 5555443444 776664 355799999998765 66554 478899999999765 677888899999999874
No 213
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=1.1e-09 Score=123.56 Aligned_cols=161 Identities=12% Similarity=0.078 Sum_probs=113.6
Q ss_pred cCCCCCeEEEEEcCCCCEEE-EEeCCCc--EEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEE
Q 004885 552 PASTSKVESCHFSPDGKLLA-TGGHDKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWD 625 (725)
Q Consensus 552 ~~H~~~V~~i~fSpdg~~La-Sgs~Dg~--V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-Dg--tIrvWD 625 (725)
..+.+.+.+.+|+|||+.|+ +.+.++. |++||+.++.. ..+..+........|+||+++|+..+. ++ .|.+||
T Consensus 242 ~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d 320 (435)
T PRK05137 242 GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMN 320 (435)
T ss_pred ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEE
Confidence 34556678999999999765 5555654 77778887665 446666667788999999998877664 33 688888
Q ss_pred CCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC--CcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcC
Q 004885 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 703 (725)
Q Consensus 626 l~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D--g~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~D 703 (725)
+..+. ...+..+...+..+.|+|+|+.++++.... ..|.+||+..+. ...+.....+..+.|+|||+.|+..+.+
T Consensus 321 ~~g~~--~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 321 ADGSN--PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGFLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred CCCCC--eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCCCCCCCCeECCCCCEEEEEEcc
Confidence 87655 344444455677789999999776655433 358888986543 3444444457789999999988776653
Q ss_pred ------CeEEEEECCCCeE
Q 004885 704 ------NYISILDVETQVC 716 (725)
Q Consensus 704 ------g~V~IwDl~tg~~ 716 (725)
..|.++|+..+..
T Consensus 398 ~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 398 PGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred CCCCCcceEEEEECCCCce
Confidence 3688889876543
No 214
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.25 E-value=7e-10 Score=114.57 Aligned_cols=157 Identities=10% Similarity=0.178 Sum_probs=122.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeEEEEeccCC--CCeEEEEEcCCCCEEEE-EeCCCeEEEEECCCC
Q 004885 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHT--QWITDVRFSPSLSRLAT-SSADRTVRVWDTENP 629 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~-~~~~i~~l~~H~--~~V~~IafsPd~~~Las-gs~DgtIrvWDl~~~ 629 (725)
...+|.+|++.+ .+|++.- ..+|+||... +.+.++.++.-. ..+.+++-+.+..+|+. |-.-|.|.|-|+...
T Consensus 93 f~~~I~~V~l~r--~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~ 169 (346)
T KOG2111|consen 93 FNSEIKAVKLRR--DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAST 169 (346)
T ss_pred eccceeeEEEcC--CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhc
Confidence 356799999964 4566664 5789999987 456666664333 23444433334445543 345789999999876
Q ss_pred Ce-eeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc-EEEEECCCCeeEEEEec---CCCeEEEEEecCCCEEEEEEcCC
Q 004885 630 DY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-IRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIEN 704 (725)
Q Consensus 630 ~~-~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~-I~IwDl~t~~~v~~~~~---~~~V~sv~fspdg~~Lla~s~Dg 704 (725)
.. ....+.+|.+.|.|++.+-+|. ++||++..|+ |||||..+|..+.+++. +..|.+|+|+|+..+|++++..|
T Consensus 170 ~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKg 248 (346)
T KOG2111|consen 170 KPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKG 248 (346)
T ss_pred CcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCC
Confidence 63 3578889999999999999987 8899998887 89999999999999985 56799999999999999988899
Q ss_pred eEEEEECCCC
Q 004885 705 YISILDVETQ 714 (725)
Q Consensus 705 ~V~IwDl~tg 714 (725)
+|+||.++..
T Consensus 249 TlHiF~l~~~ 258 (346)
T KOG2111|consen 249 TLHIFSLRDT 258 (346)
T ss_pred eEEEEEeecC
Confidence 9999998753
No 215
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.24 E-value=7.3e-10 Score=130.18 Aligned_cols=206 Identities=15% Similarity=0.140 Sum_probs=147.6
Q ss_pred CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004885 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (725)
Q Consensus 503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IW 582 (725)
.++..|+++||.||+|++|....-. +++...+...++..-...+.++.+.+.+..+|+++.||.|++.
T Consensus 1058 ~~~~s~FvsgS~DGtVKvW~~~k~~------------~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~ 1125 (1431)
T KOG1240|consen 1058 SEHTSLFVSGSDDGTVKVWNLRKLE------------GEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVL 1125 (1431)
T ss_pred CCCCceEEEecCCceEEEeeehhhh------------cCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEE
Confidence 3445799999999999999554331 1223344445555456789999999999999999999999999
Q ss_pred ECCCCe-------EEEEeccCC-CCeE-EEEEcC-CCC-EEEEEeCCCeEEEEECCCCCeeeEEE--ecCCCCeEEEEEc
Q 004885 583 CTESFT-------VKSTLEEHT-QWIT-DVRFSP-SLS-RLATSSADRTVRVWDTENPDYSLRTF--TGHSTTVMSLDFH 649 (725)
Q Consensus 583 dl~~~~-------~i~~l~~H~-~~V~-~IafsP-d~~-~Lasgs~DgtIrvWDl~~~~~~l~~~--~~h~~~V~sl~fs 649 (725)
+++-.+ ..+....+. +.+. .-+|.. ... .|+.+..-+.|..||++.... ...+ ....+.|++++.+
T Consensus 1126 ~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~-~w~lk~~~~hG~vTSi~id 1204 (1431)
T KOG1240|consen 1126 RIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD-AWRLKNQLRHGLVTSIVID 1204 (1431)
T ss_pred EccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh-HHhhhcCccccceeEEEec
Confidence 987521 122222222 3333 334433 233 677888889999999987652 2222 2234779999999
Q ss_pred cCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeEEEEEecCCC---EEEEEEc--CCeEEEEECCCCeEEEEEeC
Q 004885 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLG---RILAAAI--ENYISILDVETQVCRLKLQV 722 (725)
Q Consensus 650 P~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~---~Lla~s~--Dg~V~IwDl~tg~~v~~l~G 722 (725)
|.+. +++.|...|.+-+||++-+.++..+.+ ..++..++.+|-.+ ..++++. .+.|.+|++++|.|-..|..
T Consensus 1205 p~~~-WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~ 1283 (1431)
T KOG1240|consen 1205 PWCN-WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWA 1283 (1431)
T ss_pred CCce-EEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEc
Confidence 9988 777999999999999999999988876 66788888776543 4444444 68899999999988777653
No 216
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=2.7e-10 Score=131.80 Aligned_cols=201 Identities=14% Similarity=0.159 Sum_probs=136.3
Q ss_pred CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (725)
Q Consensus 505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl 584 (725)
...++.+|+.||.||+|..-.+...+......|..-.+ .+.+-.+.-.-+.|-....+|+++|.-..|+|||+
T Consensus 1122 D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~-------~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa 1194 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSD-------QLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDA 1194 (1387)
T ss_pred chhheeeeccCceEEEecccccccCCceeEEeeccccc-------cCccCCCCCeeeehhhhCCeEEecCCeeEEEEEec
Confidence 34567899999999999433222112222222211111 01111122234567665556666666889999999
Q ss_pred CCCeEEEEec-cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCC--eeeEEEecCCCC--eEEEEEccCCCeEEEE
Q 004885 585 ESFTVKSTLE-EHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTT--VMSLDFHPSKEDLLCS 658 (725)
Q Consensus 585 ~~~~~i~~l~-~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~--~~l~~~~~h~~~--V~sl~fsP~g~~llaS 658 (725)
+...++..+. +....|+++.-+- .++.|+.|..||.|++||.+... ..+..++.|... |..+.+.+.|-.-+++
T Consensus 1195 ~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvS 1274 (1387)
T KOG1517|consen 1195 HKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVS 1274 (1387)
T ss_pred ccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceee
Confidence 8877665553 3345566665443 47899999999999999998654 357788889877 9999999987655789
Q ss_pred EeCCCcEEEEECCCCeeEEEEe------cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004885 659 CDNNSEIRYWSINNGSCAGVFK------CQSGATQMRFQPRLGRILAAAIENYISILDVET 713 (725)
Q Consensus 659 gs~Dg~I~IwDl~t~~~v~~~~------~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~t 713 (725)
|+.||.|++||++.......+. ..+..+++..+++...+++|+. ..|+||++..
T Consensus 1275 gs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1275 GSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG 1334 (1387)
T ss_pred eccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh
Confidence 9999999999999743332222 1335999999999777766666 9999999863
No 217
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=2.4e-10 Score=120.01 Aligned_cols=211 Identities=12% Similarity=0.093 Sum_probs=155.0
Q ss_pred CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEe-cCCC
Q 004885 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PAST 555 (725)
Q Consensus 477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~H~ 555 (725)
.+..++.++.|+..+ +||++|+.|..+++|....... ..+-+++... ..|.
T Consensus 54 ~H~GCiNAlqFS~N~---------------~~L~SGGDD~~~~~W~~de~~~-------------~k~~KPI~~~~~~H~ 105 (609)
T KOG4227|consen 54 EHTGCINALQFSHND---------------RFLASGGDDMHGRVWNVDELMV-------------RKTPKPIGVMEHPHR 105 (609)
T ss_pred hhccccceeeeccCC---------------eEEeecCCcceeeeechHHHHh-------------hcCCCCceeccCccc
Confidence 355567777887755 4999999999999995432210 0111222222 3566
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~--H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l 633 (725)
..|.|++|.....+|++|+.+++|...|+++...+.++.. ..+.|+.+..+|..+.|++.+.++.|.+||++.....+
T Consensus 106 SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~ 185 (609)
T KOG4227|consen 106 SNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPI 185 (609)
T ss_pred cceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCC
Confidence 8899999998888999999999999999999988877753 23589999999999999999999999999998754222
Q ss_pred --EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe-eEEEEe---c----CCCeEEEEEecCCCEEEEEEcC
Q 004885 634 --RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK---C----QSGATQMRFQPRLGRILAAAIE 703 (725)
Q Consensus 634 --~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~-~v~~~~---~----~~~V~sv~fspdg~~Lla~s~D 703 (725)
............+-|+|....+|++.+..+.+.+||++... .+.... . .....++.|+|.|..+++.-..
T Consensus 186 ~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~ 265 (609)
T KOG4227|consen 186 SLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRG 265 (609)
T ss_pred ceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhcc
Confidence 23333445678899999999999999989999999998532 221111 1 2234678899999888877665
Q ss_pred CeEEEEECCCCe
Q 004885 704 NYISILDVETQV 715 (725)
Q Consensus 704 g~V~IwDl~tg~ 715 (725)
..-.+||+-+.+
T Consensus 266 ~~P~~~D~~S~R 277 (609)
T KOG4227|consen 266 KCPLYFDFISQR 277 (609)
T ss_pred CCCEEeeeeccc
Confidence 556666766543
No 218
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.23 E-value=2.1e-10 Score=134.62 Aligned_cols=179 Identities=16% Similarity=0.160 Sum_probs=136.1
Q ss_pred ceeeeEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCC-------CeEEEEeccCCCCeEEEEEcCCCCEEEE
Q 004885 543 FTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLAT 614 (725)
Q Consensus 543 ~~~~~~~~l~~H~~~V~~i~fSpdg-~~LaSgs~Dg~V~IWdl~~-------~~~i~~l~~H~~~V~~IafsPd~~~Las 614 (725)
.+...+..+..|...|..++.+++. .+|++||.||+|+|||.+. .+...++......+.++.+.+++..+|+
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence 3446778889999999999998755 8999999999999999864 1233444445788999999999999999
Q ss_pred EeCCCeEEEEECCCCC--e----eeEEEecCC-CCe-EEEEEccCCC-eEEEEEeCCCcEEEEECCCCeeEEEEec---C
Q 004885 615 SSADRTVRVWDTENPD--Y----SLRTFTGHS-TTV-MSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKC---Q 682 (725)
Q Consensus 615 gs~DgtIrvWDl~~~~--~----~l~~~~~h~-~~V-~sl~fsP~g~-~llaSgs~Dg~I~IwDl~t~~~v~~~~~---~ 682 (725)
++.||.|++.+++... . +.+....+. +.| ..-+|..... .+++.+..-+.|..||++.......++. +
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence 9999999999987621 1 111111121 223 3333433322 3667777788899999998777666664 6
Q ss_pred CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 683 SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 683 ~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
+-|++++.+|.+.+++.|+..|.+.+||+|-+..+.++.
T Consensus 1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~ 1234 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE 1234 (1431)
T ss_pred cceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc
Confidence 789999999999999999999999999999988877664
No 219
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.22 E-value=4.1e-11 Score=128.50 Aligned_cols=161 Identities=13% Similarity=0.202 Sum_probs=140.7
Q ss_pred eeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004885 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (725)
Q Consensus 545 ~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvW 624 (725)
..++++++.|. .|..+.|-|..=+|++++..|.++.-|+.+|+.+..+..-.+.+..++-.|-...+-+|...|+|.+|
T Consensus 200 GtElHClk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlW 278 (545)
T KOG1272|consen 200 GTELHCLKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLW 278 (545)
T ss_pred CcEEeehhhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEec
Confidence 35777887775 48999999988899999999999999999999998888778889999999988899999999999999
Q ss_pred ECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCC
Q 004885 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN 704 (725)
Q Consensus 625 Dl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg 704 (725)
...... ++..+.+|.++|.+|++++.|. +++|.+.|..|+|||+++...+.++....+...++|+..| +++++...
T Consensus 279 SP~ske-PLvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~G~ 354 (545)
T KOG1272|consen 279 SPNSKE-PLVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSYGD 354 (545)
T ss_pred CCCCcc-hHHHHHhcCCCcceEEECCCCc-EEeecccccceeEeeeccccccceeecCCCcccccccccc--ceeeecCC
Confidence 999887 7888889999999999999998 5668888999999999998877777766778889998763 66777778
Q ss_pred eEEEEE
Q 004885 705 YISILD 710 (725)
Q Consensus 705 ~V~IwD 710 (725)
.|.||.
T Consensus 355 ~v~iw~ 360 (545)
T KOG1272|consen 355 HVQIWK 360 (545)
T ss_pred eeeeeh
Confidence 899994
No 220
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=2.2e-09 Score=121.00 Aligned_cols=163 Identities=19% Similarity=0.178 Sum_probs=115.5
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCC--eEEEEE
Q 004885 552 PASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADR--TVRVWD 625 (725)
Q Consensus 552 ~~H~~~V~~i~fSpdg~~LaSgs~---Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasg-s~Dg--tIrvWD 625 (725)
..+...+.+.+|||||+.|+..+. +..|++||+.+++... +....+.+..++|+||++.|+.. +.++ .|.+||
T Consensus 195 t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d 273 (429)
T PRK03629 195 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMD 273 (429)
T ss_pred ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEE
Confidence 345678999999999998886543 3579999998875433 22233445578999999988754 4444 588999
Q ss_pred CCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc--EEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcC
Q 004885 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 703 (725)
Q Consensus 626 l~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~--I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~D 703 (725)
+.++. +..+..+...+..++|+|+|+.++++...++. |+++|+.++...........+...+|+|||++|+.++.+
T Consensus 274 ~~tg~--~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~ 351 (429)
T PRK03629 274 LASGQ--IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSN 351 (429)
T ss_pred CCCCC--EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEcc
Confidence 98876 34444445567899999999977766665554 555577766554333333456778999999998887653
Q ss_pred ---CeEEEEECCCCeEE
Q 004885 704 ---NYISILDVETQVCR 717 (725)
Q Consensus 704 ---g~V~IwDl~tg~~v 717 (725)
..|.+||+.+++..
T Consensus 352 ~g~~~I~~~dl~~g~~~ 368 (429)
T PRK03629 352 GGQQHIAKQDLATGGVQ 368 (429)
T ss_pred CCCceEEEEECCCCCeE
Confidence 46899999988643
No 221
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.21 E-value=6.1e-09 Score=114.86 Aligned_cols=193 Identities=19% Similarity=0.199 Sum_probs=137.4
Q ss_pred EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004885 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 587 (725)
Q Consensus 508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~ 587 (725)
++++-..++.|.+. +..+.+.+..+......-..+.|+|||+++++++.|+.|.++|+.+.
T Consensus 8 ~~V~~~~~~~v~vi-------------------D~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~ 68 (369)
T PF02239_consen 8 FYVVERGSGSVAVI-------------------DGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG 68 (369)
T ss_dssp EEEEEGGGTEEEEE-------------------ETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS
T ss_pred EEEEecCCCEEEEE-------------------ECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc
Confidence 44555567888888 44445666677655443445789999999999999999999999999
Q ss_pred eEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCeeeEEEec-------CCCCeEEEEEccCCCeEEEEE
Q 004885 588 TVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTG-------HSTTVMSLDFHPSKEDLLCSC 659 (725)
Q Consensus 588 ~~i~~l~~H~~~V~~IafsPd~~~Lasgs-~DgtIrvWDl~~~~~~l~~~~~-------h~~~V~sl~fsP~g~~llaSg 659 (725)
+.+.++.. .....++++++|++++++++ .++.+.++|.++.+ .+..+.. ....+..|..+|.+..++++-
T Consensus 69 ~~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle-~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l 146 (369)
T PF02239_consen 69 KVVATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLE-PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL 146 (369)
T ss_dssp SEEEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE
T ss_pred cEEEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEecccccc-ceeecccccccccccCCCceeEEecCCCCEEEEEE
Confidence 99988875 34568899999999998776 58999999999887 5655542 234678888899988677666
Q ss_pred eCCCcEEEEECCCCeeE--EEEecCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEe
Q 004885 660 DNNSEIRYWSINNGSCA--GVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 660 s~Dg~I~IwDl~t~~~v--~~~~~~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~tg~~v~~l~ 721 (725)
-+.+.|.+.|....+.+ ..+..........|+|++++++++.. ++.|.++|.++++.+..+.
T Consensus 147 kd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 147 KDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp TTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred ccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEee
Confidence 66688999998765433 44445677889999999999887654 6899999999998887654
No 222
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.21 E-value=3.1e-10 Score=129.33 Aligned_cols=159 Identities=23% Similarity=0.297 Sum_probs=122.5
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeE--EE----EeccCCCCeEEEEEcCCC--CEEEEEeCCCeEEEEE
Q 004885 555 TSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTV--KS----TLEEHTQWITDVRFSPSL--SRLATSSADRTVRVWD 625 (725)
Q Consensus 555 ~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~~~--i~----~l~~H~~~V~~IafsPd~--~~Lasgs~DgtIrvWD 625 (725)
...|+|++|+| +..+||.|+++|.|.+||++.+.. .. ....|..+|+.+.|..+. .-|++++.||.|+.|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 56799999999 666889999999999999987543 22 224688999999997743 4599999999999998
Q ss_pred CCCCCe--------------------------------------------------------e------eEEEecCCCCe
Q 004885 626 TENPDY--------------------------------------------------------S------LRTFTGHSTTV 643 (725)
Q Consensus 626 l~~~~~--------------------------------------------------------~------l~~~~~h~~~V 643 (725)
++.-.. . ...+..|.+.|
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v 401 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV 401 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence 752110 0 11233467889
Q ss_pred EEEEEccCCCeEEEEEeCCCcEEEEECC-CCeeEEEEec-CCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCC
Q 004885 644 MSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKC-QSGATQMRFQPRLGRILAAA-IENYISILDVETQ 714 (725)
Q Consensus 644 ~sl~fsP~g~~llaSgs~Dg~I~IwDl~-t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s-~Dg~V~IwDl~tg 714 (725)
+++.++|-+..+|.+++ |-+|+||... ...++..+.. ...|++++|+|....++++. .||.|.|||+...
T Consensus 402 ~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred EeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 99999999988887777 8999999987 6667766665 34499999999876655554 4899999999643
No 223
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.21 E-value=3.1e-09 Score=111.70 Aligned_cols=120 Identities=23% Similarity=0.347 Sum_probs=98.3
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCe-EEEEEC
Q 004885 550 LIPASTSKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT-VRVWDT 626 (725)
Q Consensus 550 ~l~~H~~~V~~i~fSpdg~~LaSgs--~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dgt-IrvWDl 626 (725)
+...+...+.++.++..+.+||.-+ ..|.|.|||+.+-+.+.++..|.+.|-+++|+++|.+|||++..|+ |||+.+
T Consensus 124 t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v 203 (391)
T KOG2110|consen 124 TTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSV 203 (391)
T ss_pred ccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEc
Confidence 3334566677777777777888543 3689999999999999999999999999999999999999999886 789999
Q ss_pred CCCCeeeEEEecC--CCCeEEEEEccCCCeEEEEEeCCCcEEEEECC
Q 004885 627 ENPDYSLRTFTGH--STTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (725)
Q Consensus 627 ~~~~~~l~~~~~h--~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~ 671 (725)
.++. .+..|+-- ...|.+++|+|++. +|++.+..++|+||.++
T Consensus 204 ~~G~-kl~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 204 PEGQ-KLYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLE 248 (391)
T ss_pred CCcc-EeeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEec
Confidence 9988 56666522 24589999999988 66666778899999886
No 224
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.21 E-value=4.6e-11 Score=132.05 Aligned_cols=149 Identities=21% Similarity=0.338 Sum_probs=124.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEE
Q 004885 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~ 636 (725)
.|..++|-|||..|+.+. +..+.|||...|..+.++++|...|+|++|+.||+++++|+.|+.|.+|.-.-.. .+ .
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~L-k- 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-IL-K- 89 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-ee-e-
Confidence 599999999999877764 4579999999999999999999999999999999999999999999999876544 22 2
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE 712 (725)
Q Consensus 637 ~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~ 712 (725)
-.|...|-|+.|+|-.. .+++|+-. ..-+|..... .+...+....|.+++|..||.+++.|-.+|+|.|-+..
T Consensus 90 YSH~D~IQCMsFNP~~h-~LasCsLs-dFglWS~~qK-~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~ 162 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITH-QLASCSLS-DFGLWSPEQK-SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN 162 (1081)
T ss_pred eccCCeeeEeecCchHH-Hhhhcchh-hccccChhhh-hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC
Confidence 25889999999999966 67788743 4668887643 34444446789999999999999999999999998643
No 225
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.19 E-value=3.1e-09 Score=118.79 Aligned_cols=164 Identities=18% Similarity=0.177 Sum_probs=120.9
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEE-EeCCC--eEEE
Q 004885 550 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADR--TVRV 623 (725)
Q Consensus 550 ~l~~H~~~V~~i~fSpdg~~LaSgs~D---g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Las-gs~Dg--tIrv 623 (725)
.+..+...+.+.+|+|||++|+.++.+ ..|++||+.+++... +..+...+.+++|+||++.|+. .+.++ .|.+
T Consensus 184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~ 262 (417)
T TIGR02800 184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYV 262 (417)
T ss_pred EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEE
Confidence 344566678999999999999887654 479999998876543 3345566778999999987764 44444 5888
Q ss_pred EECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEE
Q 004885 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 701 (725)
Q Consensus 624 WDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg--~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s 701 (725)
||+.++. ...+..+........|+|+|+.++++...++ .|++||+.+++..........+..+.|+|++.+|+.++
T Consensus 263 ~d~~~~~--~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~ 340 (417)
T TIGR02800 263 MDLDGKQ--LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVH 340 (417)
T ss_pred EECCCCC--EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEE
Confidence 9998765 3444455555667899999997776665444 58888888776554443455678889999999999888
Q ss_pred cCC---eEEEEECCCCeE
Q 004885 702 IEN---YISILDVETQVC 716 (725)
Q Consensus 702 ~Dg---~V~IwDl~tg~~ 716 (725)
.++ .|.+||+.++..
T Consensus 341 ~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 341 REGGGFNIAVMDLDGGGE 358 (417)
T ss_pred ccCCceEEEEEeCCCCCe
Confidence 765 799999988644
No 226
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=3.7e-09 Score=119.10 Aligned_cols=165 Identities=18% Similarity=0.139 Sum_probs=110.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-----CCcEEEEECCC---CeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEE-
Q 004885 555 TSKVESCHFSPDGKLLATGGH-----DKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVW- 624 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~-----Dg~V~IWdl~~---~~~i~~l~~H~~~V~~IafsPd~~~Lasgs-~DgtIrvW- 624 (725)
.+.....+|||||+.|+..+. |..+.+|++.. +........+...+...+|+||++.|+..+ .++...||
T Consensus 230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~ 309 (428)
T PRK01029 230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYI 309 (428)
T ss_pred CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence 334567899999998876553 22344477664 233333333334456789999999877655 46655555
Q ss_pred -ECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC--CcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEE
Q 004885 625 -DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 701 (725)
Q Consensus 625 -Dl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D--g~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s 701 (725)
++.........+..+...+....|+|+|+.++++...+ ..|.+||+.++++.........+..+.|+|||++|+..+
T Consensus 310 ~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~ 389 (428)
T PRK01029 310 MQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSA 389 (428)
T ss_pred EECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEE
Confidence 44322213444555556678899999999777666544 369999999887755444344678899999999887665
Q ss_pred c---CCeEEEEECCCCeEEEE
Q 004885 702 I---ENYISILDVETQVCRLK 719 (725)
Q Consensus 702 ~---Dg~V~IwDl~tg~~v~~ 719 (725)
. +..|++||+.+++...-
T Consensus 390 ~~~g~~~L~~vdl~~g~~~~L 410 (428)
T PRK01029 390 GNSNESELYLISLITKKTRKI 410 (428)
T ss_pred CCCCCceEEEEECCCCCEEEe
Confidence 4 35799999988865443
No 227
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.19 E-value=6.5e-10 Score=113.69 Aligned_cols=169 Identities=19% Similarity=0.200 Sum_probs=133.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE--EeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeee
Q 004885 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSL 633 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~--~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~~l 633 (725)
...++.|++.+.-++++..+|.+.+-+........ .+++|...++...|+. +.+.+++|+.|+.+..||++.+...+
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 45688999989999999999999976665544444 7899999999999987 46789999999999999999655344
Q ss_pred EE-EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC-CCeeEEEEecCCCeEEEEEecCCC-EEEEEEcCCeEEEEE
Q 004885 634 RT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKCQSGATQMRFQPRLG-RILAAAIENYISILD 710 (725)
Q Consensus 634 ~~-~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~-t~~~v~~~~~~~~V~sv~fspdg~-~Lla~s~Dg~V~IwD 710 (725)
.. ..-|...|.+|.-+|..+.++++|+.|..|++||.+ -++++..-...++|..++++|... .+++++.-+.++|.+
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~ 282 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD 282 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence 33 567889999999999888899999999999999999 478887777789999999999744 344555556677777
Q ss_pred CCCC--e---EEEEEeCCCC
Q 004885 711 VETQ--V---CRLKLQVSHS 725 (725)
Q Consensus 711 l~tg--~---~v~~l~GH~s 725 (725)
...+ + .....++|++
T Consensus 283 ~~~~~~e~~~~~~s~~~hdS 302 (339)
T KOG0280|consen 283 SSDKVLEFQIVLPSDKIHDS 302 (339)
T ss_pred ecccccchheeeeccccccc
Confidence 6654 3 4455566653
No 228
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.18 E-value=8.9e-11 Score=118.28 Aligned_cols=152 Identities=18% Similarity=0.267 Sum_probs=120.0
Q ss_pred EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004885 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 587 (725)
Q Consensus 508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~ 587 (725)
++++|-.++.|.+|+...+. ..... ...++.+..+..|..+|.++.|.+.-..=++|+.+.++.+|++...
T Consensus 167 lllaGyEsghvv~wd~S~~~----~~~~~-----~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s 237 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGD----KIIQL-----PQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHS 237 (323)
T ss_pred EEEEeccCCeEEEEEccCCc----eeecc-----ccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccc
Confidence 66778889999999665541 11111 1123445566789999999999876666778888999999988642
Q ss_pred --eE--EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC
Q 004885 588 --TV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (725)
Q Consensus 588 --~~--i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg 663 (725)
.+ ...++-..-.|..+.+.||++.++|+++|+.||||..++.. ++..++-|.+.|++++|+|+.+ ++++++.|+
T Consensus 238 ~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~-pLAVLkyHsagvn~vAfspd~~-lmAaaskD~ 315 (323)
T KOG0322|consen 238 TGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN-PLAVLKYHSAGVNAVAFSPDCE-LMAAASKDA 315 (323)
T ss_pred cCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC-chhhhhhhhcceeEEEeCCCCc-hhhhccCCc
Confidence 11 11222224568899999999999999999999999999988 8999999999999999999966 899999999
Q ss_pred cEEEEEC
Q 004885 664 EIRYWSI 670 (725)
Q Consensus 664 ~I~IwDl 670 (725)
+|.+|++
T Consensus 316 rISLWkL 322 (323)
T KOG0322|consen 316 RISLWKL 322 (323)
T ss_pred eEEeeec
Confidence 9999986
No 229
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=4.2e-10 Score=130.26 Aligned_cols=158 Identities=17% Similarity=0.252 Sum_probs=120.7
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC---CeEEEEeccCCCC--eEEEEEcCCCC-EEEEEeCCCeEEEEECC
Q 004885 555 TSKVESCHFSP-DGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQW--ITDVRFSPSLS-RLATSSADRTVRVWDTE 627 (725)
Q Consensus 555 ~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~---~~~i~~l~~H~~~--V~~IafsPd~~-~Lasgs~DgtIrvWDl~ 627 (725)
...|+++.-+- .|+.|++|..||.|++||.+. ...+..++.|... |..+.+-+.|- .|++|+.||.|++||++
T Consensus 1208 ~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1208 STLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLR 1287 (1387)
T ss_pred CccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecc
Confidence 34466665543 578999999999999999875 3457788899888 99999998654 59999999999999999
Q ss_pred CC-CeeeEEEecCC--C-CeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--------CCCeEEEEEecCCC
Q 004885 628 NP-DYSLRTFTGHS--T-TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--------QSGATQMRFQPRLG 695 (725)
Q Consensus 628 ~~-~~~l~~~~~h~--~-~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--------~~~V~sv~fspdg~ 695 (725)
.. .....++..|. + .++++..|+..+ ++++|+. +.|+||++. |+.+..++. .+.+.|++|+|..-
T Consensus 1288 ~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~ 1364 (1387)
T KOG1517|consen 1288 MSSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRL 1364 (1387)
T ss_pred cCcccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhH
Confidence 84 22222333332 3 489999999977 8878876 899999997 333333331 45689999999977
Q ss_pred EEEEEEcCCeEEEEECCCCe
Q 004885 696 RILAAAIENYISILDVETQV 715 (725)
Q Consensus 696 ~Lla~s~Dg~V~IwDl~tg~ 715 (725)
.+++|+.|.+|.||......
T Consensus 1365 llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1365 LLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hhhhccCCceEEEeecCCcC
Confidence 78888889999999887653
No 230
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=5.2e-10 Score=118.19 Aligned_cols=177 Identities=13% Similarity=0.106 Sum_probs=141.0
Q ss_pred CCCCcEEEEeeCC--CcEEEecCCCCCCCCCccccccccCC---CceeeeEEEecCCCCCeEEEEEcCC--CCEEEEEeC
Q 004885 503 TDMDRFVDDGSLD--DNVESFLSPDDADPRDRVGRSAEVGK---GFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGH 575 (725)
Q Consensus 503 ~~~~~~lasGs~D--~~V~vw~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~H~~~V~~i~fSpd--g~~LaSgs~ 575 (725)
+....++++|+.. ..+++|+..... .+|.... ..---.+ .-.++++.|-+. ...||++..
T Consensus 158 ~~~p~Iva~GGke~~n~lkiwdle~~~-------qiw~aKNvpnD~L~LrV------PvW~tdi~Fl~g~~~~~fat~T~ 224 (412)
T KOG3881|consen 158 DTDPYIVATGGKENINELKIWDLEQSK-------QIWSAKNVPNDRLGLRV------PVWITDIRFLEGSPNYKFATITR 224 (412)
T ss_pred CCCCceEecCchhcccceeeeecccce-------eeeeccCCCCcccccee------eeeeccceecCCCCCceEEEEec
Confidence 4455688889999 889999654441 1121111 0000011 234788999886 778999999
Q ss_pred CCcEEEEECCC-CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCe
Q 004885 576 DKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654 (725)
Q Consensus 576 Dg~V~IWdl~~-~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~ 654 (725)
-+.|++||... .+++..|.--..+|+++...|+++.|++|..-+.+..||++.+......+.+..+.|.+|..+|.++
T Consensus 225 ~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~- 303 (412)
T KOG3881|consen 225 YHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHP- 303 (412)
T ss_pred ceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCc-
Confidence 99999999986 4577778777889999999999999999999999999999999855556899999999999999988
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecC
Q 004885 655 LLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR 693 (725)
Q Consensus 655 llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspd 693 (725)
++++|+-|+.|||+|+.+..++...-....+++|.+.++
T Consensus 304 ~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 304 VLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred eEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 888999999999999999888777766788888888665
No 231
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.13 E-value=8.4e-10 Score=128.40 Aligned_cols=149 Identities=19% Similarity=0.262 Sum_probs=126.2
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCC
Q 004885 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS 640 (725)
Q Consensus 561 i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~ 640 (725)
+-++++.-++++|+--+.|.+|+....+.-..+.+|.+.|.++.|+-|++++++++.|.++|+|++++.+....+..+|.
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs 218 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS 218 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc
Confidence 33455666899999999999999874433336889999999999999999999999999999999999885555778999
Q ss_pred CCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004885 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVET 713 (725)
Q Consensus 641 ~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~t 713 (725)
..|+.++|+|. .+++++.|-+.++|+.+ +..+.+++. ...+..++..++.-.+++++.|+.+++||+..
T Consensus 219 aRvw~~~~~~n---~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 219 ARVWACCFLPN---RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ceeEEEEeccc---eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 99999999998 57799999999999766 444446654 56799999999988889999999999999865
No 232
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.12 E-value=2.9e-10 Score=137.10 Aligned_cols=189 Identities=22% Similarity=0.297 Sum_probs=149.5
Q ss_pred CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004885 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (725)
Q Consensus 503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IW 582 (725)
++...+..+|+-|+.|++|.+..+. .+...+ .+-...|+.+.|+..|+.+..+..||.+.+|
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~~~----------------~v~~~r--t~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~ 2278 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQ----------------QVVCFR--TAGNSRVTRSRFNHQGNKFGIVDGDGDLSLW 2278 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccCCC----------------eEEEee--ccCcchhhhhhhcccCCceeeeccCCceeec
Confidence 3445688999999999999654442 111111 1233789999999999999999999999999
Q ss_pred ECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe---CCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEE
Q 004885 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS---ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (725)
Q Consensus 583 dl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs---~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSg 659 (725)
.+. .++......|.....+++|-. ..+++++ .++.+.+||..-+...-..-++|.+.++++++.|... +|++|
T Consensus 2279 q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q-llisg 2354 (2439)
T KOG1064|consen 2279 QAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ-LLISG 2354 (2439)
T ss_pred ccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce-EEEec
Confidence 987 566777888999999999975 5677764 4779999997654322222278999999999999977 78899
Q ss_pred eCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885 660 DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQV 722 (725)
Q Consensus 660 s~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~G 722 (725)
+.+|.|++||++..+.++.+.. ++ ...++++++.+|.|+||++..-..+++|++
T Consensus 2355 gr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred CCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 9999999999999888887764 45 457899999999999999998888887764
No 233
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=8e-09 Score=116.35 Aligned_cols=164 Identities=17% Similarity=0.171 Sum_probs=117.8
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEeCCC--eEEE
Q 004885 550 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADR--TVRV 623 (725)
Q Consensus 550 ~l~~H~~~V~~i~fSpdg~~LaSgs~D---g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~La-sgs~Dg--tIrv 623 (725)
.+..+...+....|+|||+.|+..+.+ ..|.+||+.+++... +....+.+...+|+||+++|+ +.+.++ .|.+
T Consensus 193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~ 271 (430)
T PRK00178 193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYV 271 (430)
T ss_pred EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEE
Confidence 344566779999999999998876644 368999998876543 333344566789999999876 444454 6888
Q ss_pred EECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEE
Q 004885 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 701 (725)
Q Consensus 624 WDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg--~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s 701 (725)
||+.++. ...+..+........|+|+|+.++++...++ .|+++|+.+++...............|+|+|++|+..+
T Consensus 272 ~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~ 349 (430)
T PRK00178 272 MDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVH 349 (430)
T ss_pred EECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEE
Confidence 8998765 3445556566778899999998877765554 57788888777544332233345678999999988876
Q ss_pred cC-C--eEEEEECCCCeE
Q 004885 702 IE-N--YISILDVETQVC 716 (725)
Q Consensus 702 ~D-g--~V~IwDl~tg~~ 716 (725)
.+ + .|.+||+.+++.
T Consensus 350 ~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 350 RQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred ccCCceEEEEEECCCCCE
Confidence 53 2 588999998754
No 234
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=2.5e-09 Score=117.42 Aligned_cols=226 Identities=12% Similarity=0.126 Sum_probs=153.8
Q ss_pred CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCcccccccc------------CCCce
Q 004885 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEV------------GKGFT 544 (725)
Q Consensus 477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~------------~~~~~ 544 (725)
......+.+..++||. .++++|..-..|++|....- ..++.++.+. .+..-
T Consensus 49 e~p~ast~ik~s~DGq--------------Y~lAtG~YKP~ikvydlanL---SLKFERhlDae~V~feiLsDD~SK~v~ 111 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQ--------------YLLATGTYKPQIKVYDLANL---SLKFERHLDAEVVDFEILSDDYSKSVF 111 (703)
T ss_pred CCccccceeEecCCCc--------------EEEEecccCCceEEEEcccc---eeeeeecccccceeEEEeccchhhheE
Confidence 3444557778888887 46788888899999954332 1111111111 11111
Q ss_pred eeeEEEecCCC-----------CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEE
Q 004885 545 FTEFQLIPAST-----------SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 613 (725)
Q Consensus 545 ~~~~~~l~~H~-----------~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~La 613 (725)
+..-+.+.-|. ..-.+++++.-..-|++++....|+-++++.|..+..|....+.+++|..++...+|+
T Consensus 112 L~~DR~IefHak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla 191 (703)
T KOG2321|consen 112 LQNDRTIEFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLA 191 (703)
T ss_pred eecCceeeehhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEE
Confidence 11112222221 1123455544333344444556799999999999988888889999999999989999
Q ss_pred EEeCCCeEEEEECCCCCeeeEEEe------cCCC-----CeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-
Q 004885 614 TSSADRTVRVWDTENPDYSLRTFT------GHST-----TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC- 681 (725)
Q Consensus 614 sgs~DgtIrvWDl~~~~~~l~~~~------~h~~-----~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~- 681 (725)
+|+.||.|-.||.+... .+.++. .|.+ .|+++.|+.+|- -+++|..+|.|.|||+++.+++..-.+
T Consensus 192 ~Gt~~g~VEfwDpR~ks-rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa~~pl~~kdh~ 269 (703)
T KOG2321|consen 192 CGTEDGVVEFWDPRDKS-RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRASKPLLVKDHG 269 (703)
T ss_pred ecccCceEEEecchhhh-hheeeecccccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEcccCCceeecccC
Confidence 99999999999999876 233222 2333 399999998865 567888999999999999988877766
Q ss_pred -CCCeEEEEEecCCCE-EEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 682 -QSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 682 -~~~V~sv~fspdg~~-Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
.-+|..+.|.+.+.. .++......++|||-.+|+....++
T Consensus 270 ~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE 311 (703)
T KOG2321|consen 270 YELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE 311 (703)
T ss_pred CccceeeecccccCCCceEEecchHHhhhcccccCCceeecc
Confidence 667999999776433 3333445789999999998777665
No 235
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=4.6e-09 Score=120.54 Aligned_cols=167 Identities=17% Similarity=0.262 Sum_probs=133.9
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004885 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (725)
Q Consensus 552 ~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~----~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~ 627 (725)
..|...++|.++||+++++|+|..||.|.||.--. ......+.-|...|++++|+++|.+|++|+..+.+.+|.+.
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 35777799999999999999999999999996422 23345678899999999999999999999999999999999
Q ss_pred CCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec------------CCCeEEEEEecCCC
Q 004885 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------------QSGATQMRFQPRLG 695 (725)
Q Consensus 628 ~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~------------~~~V~sv~fspdg~ 695 (725)
+++ ...+..-.++|..+.++|++. +++.+..|..|.+....+-....++.+ .+-.+.++++|.-+
T Consensus 282 T~~--kqfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~ 358 (792)
T KOG1963|consen 282 TGK--KQFLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN 358 (792)
T ss_pred CCC--cccccccCCeeEEEEEcCCCC-eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence 987 344444568899999999988 555666799999987755443333322 23367889999778
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 696 RILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 696 ~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
.++..+.-+.|.+||+-+.+.+..+.
T Consensus 359 ~~vln~~~g~vQ~ydl~td~~i~~~~ 384 (792)
T KOG1963|consen 359 SLVLNGHPGHVQFYDLYTDSTIYKLQ 384 (792)
T ss_pred ceeecCCCceEEEEeccccceeeeEE
Confidence 88888999999999999887666554
No 236
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=2e-09 Score=118.24 Aligned_cols=164 Identities=16% Similarity=0.270 Sum_probs=132.5
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec------cCCC-----CeEEEEEcCCCCEEEEEe
Q 004885 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE------EHTQ-----WITDVRFSPSLSRLATSS 616 (725)
Q Consensus 548 ~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~------~H~~-----~V~~IafsPd~~~Lasgs 616 (725)
+..+....+.|++|..++...+|++|+.||.|-.||.++...+.++. .|.+ .|+++.|+-+|-.+++|.
T Consensus 168 L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGt 247 (703)
T KOG2321|consen 168 LNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGT 247 (703)
T ss_pred ccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeec
Confidence 33445556889999999988899999999999999998866555543 2333 399999999999999999
Q ss_pred CCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCC-CeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCC
Q 004885 617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG 695 (725)
Q Consensus 617 ~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g-~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~ 695 (725)
.+|.|.|||++.....+..-.+..-+|..+.|.+.+ ...+++++ ...++|||-.+|+....++....+..+|+-|+++
T Consensus 248 s~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sG 326 (703)
T KOG2321|consen 248 STGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSG 326 (703)
T ss_pred cCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecc-hHHhhhcccccCCceeeccccCCcCceeeecCCc
Confidence 999999999999885444445556789999997762 22455655 6789999999999999999888899999999999
Q ss_pred EEEEEEcCCeEEEEECC
Q 004885 696 RILAAAIENYISILDVE 712 (725)
Q Consensus 696 ~Lla~s~Dg~V~IwDl~ 712 (725)
.++++-.+..+..|=+.
T Consensus 327 m~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 327 MFFTANESSKMHTYYIP 343 (703)
T ss_pred eEEEecCCCcceeEEcc
Confidence 99999888777666443
No 237
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=3.6e-08 Score=111.05 Aligned_cols=161 Identities=14% Similarity=0.087 Sum_probs=107.2
Q ss_pred CCeEEEEEcCCCCEEE-EEeCCC--cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEECCCC
Q 004885 556 SKVESCHFSPDGKLLA-TGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWDTENP 629 (725)
Q Consensus 556 ~~V~~i~fSpdg~~La-Sgs~Dg--~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-Dg--tIrvWDl~~~ 629 (725)
+.+.+.+|+|||+.|+ +.+.++ .|++||+.++... .+..+...+....|+||++.|+..+. ++ .|.++|+.++
T Consensus 243 g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 243 GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 3456789999999876 444555 5888899877654 45556666777899999998766553 33 5777788776
Q ss_pred CeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcC---C
Q 004885 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE---N 704 (725)
Q Consensus 630 ~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg--~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~D---g 704 (725)
.. ..+...........|+|+|+.++++...++ .|.+||+.++.... +..........|+|+|+.++.++.+ .
T Consensus 322 ~~--~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~~~~~~p~~spdg~~i~~~~~~~g~~ 398 (430)
T PRK00178 322 RA--ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDTSLDESPSVAPNGTMLIYATRQQGRG 398 (430)
T ss_pred CE--EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCCCCCCCceECCCCCEEEEEEecCCce
Confidence 62 222222233456789999997776665444 58889998876533 3322233466899999998887764 3
Q ss_pred eEEEEECCCCeEEEEEe
Q 004885 705 YISILDVETQVCRLKLQ 721 (725)
Q Consensus 705 ~V~IwDl~tg~~v~~l~ 721 (725)
.|.++++.. .....+.
T Consensus 399 ~l~~~~~~g-~~~~~l~ 414 (430)
T PRK00178 399 VLMLVSING-RVRLPLP 414 (430)
T ss_pred EEEEEECCC-CceEECc
Confidence 577888854 3333443
No 238
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.07 E-value=2.8e-09 Score=111.00 Aligned_cols=218 Identities=16% Similarity=0.224 Sum_probs=150.1
Q ss_pred cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC-
Q 004885 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS- 554 (725)
Q Consensus 476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H- 554 (725)
.....-++++.|...|. +|++|..+|.|.+|.-.....+ .+.....+..|
T Consensus 22 vteadiis~vef~~~Ge---------------~LatGdkgGRVv~f~r~~~~~~--------------ey~~~t~fqshe 72 (433)
T KOG1354|consen 22 VTEADIISAVEFDHYGE---------------RLATGDKGGRVVLFEREKLYKG--------------EYNFQTEFQSHE 72 (433)
T ss_pred echhcceeeEEeecccc---------------eEeecCCCCeEEEeeccccccc--------------ceeeeeeeeccC
Confidence 34445566677776665 9999999999999933222211 11222222222
Q ss_pred -----------CCCeEEEEEcCCCC--EEEEEeCCCcEEEEECCCCeE--------------------------------
Q 004885 555 -----------TSKVESCHFSPDGK--LLATGGHDKKAVLWCTESFTV-------------------------------- 589 (725)
Q Consensus 555 -----------~~~V~~i~fSpdg~--~LaSgs~Dg~V~IWdl~~~~~-------------------------------- 589 (725)
..+|..|.|.++++ .++....|++|++|-+.....
T Consensus 73 pEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~ve 152 (433)
T KOG1354|consen 73 PEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVE 152 (433)
T ss_pred cccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceee
Confidence 35688999998665 567777899999997743110
Q ss_pred ---EEEe-ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--eeeEEEecCC-----CCeEEEEEccCCCeEEEE
Q 004885 590 ---KSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHS-----TTVMSLDFHPSKEDLLCS 658 (725)
Q Consensus 590 ---i~~l-~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~--~~l~~~~~h~-----~~V~sl~fsP~g~~llaS 658 (725)
.+++ .+|..-|++|.+..|...++++. |=.|.+|+++-.. ..+..++.+. .-|++..|+|....+|+-
T Consensus 153 a~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~Y 231 (433)
T KOG1354|consen 153 ASPRRVYANAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVY 231 (433)
T ss_pred eeeeeeccccceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEE
Confidence 0111 35788899999999988888764 7889999987543 2344444443 568999999998888888
Q ss_pred EeCCCcEEEEECCCCee-EE---EEec-------------CCCeEEEEEecCCCEEEEEEcCCeEEEEEC-CCCeEEEEE
Q 004885 659 CDNNSEIRYWSINNGSC-AG---VFKC-------------QSGATQMRFQPRLGRILAAAIENYISILDV-ETQVCRLKL 720 (725)
Q Consensus 659 gs~Dg~I~IwDl~t~~~-v~---~~~~-------------~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl-~tg~~v~~l 720 (725)
.+..|+|++.|++...+ .. .|+. -..|..+.|+++|+|+++- .--+|+|||+ ...+++.++
T Consensus 232 SSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsR-Dyltvk~wD~nme~~pv~t~ 310 (433)
T KOG1354|consen 232 SSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSR-DYLTVKLWDLNMEAKPVETY 310 (433)
T ss_pred ecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEe-ccceeEEEeccccCCcceEE
Confidence 88899999999984321 11 1110 2347889999999888754 3378999999 556888888
Q ss_pred eCCC
Q 004885 721 QVSH 724 (725)
Q Consensus 721 ~GH~ 724 (725)
+-|.
T Consensus 311 ~vh~ 314 (433)
T KOG1354|consen 311 PVHE 314 (433)
T ss_pred eehH
Confidence 7764
No 239
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.04 E-value=5.4e-08 Score=108.78 Aligned_cols=164 Identities=17% Similarity=0.185 Sum_probs=110.3
Q ss_pred CCCCCeEEEEEcCCCCEEEE-EeCCC--cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEEC
Q 004885 553 ASTSKVESCHFSPDGKLLAT-GGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWDT 626 (725)
Q Consensus 553 ~H~~~V~~i~fSpdg~~LaS-gs~Dg--~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-Dg--tIrvWDl 626 (725)
.+.+.+.+++|+|||+.|+. .+.++ .|++||+.++... .+..+........|+|++++|+.++. ++ .|.+||+
T Consensus 231 ~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~ 309 (417)
T TIGR02800 231 SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDA 309 (417)
T ss_pred cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 34556778999999997764 44444 5888998876543 44445555667899999998876654 33 5777888
Q ss_pred CCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCC
Q 004885 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN 704 (725)
Q Consensus 627 ~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg--~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg 704 (725)
.++. ...+..+...+..+.|+|+++.++++....+ .|.+||+.++.... +..........|+|++++|+.++.++
T Consensus 310 ~~~~--~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 310 DGGE--VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDTGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CCCC--EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCCCCCCCceECCCCCEEEEEEeCC
Confidence 7665 3444445566788999999986665544322 68899998765433 33233455678999999988887753
Q ss_pred ---eEEEEECCCCeEEEEEe
Q 004885 705 ---YISILDVETQVCRLKLQ 721 (725)
Q Consensus 705 ---~V~IwDl~tg~~v~~l~ 721 (725)
.+++++.. +.....+.
T Consensus 387 ~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 387 GRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred CcEEEEEEECC-CceeeECC
Confidence 46666654 44455554
No 240
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.04 E-value=4.9e-10 Score=120.34 Aligned_cols=161 Identities=12% Similarity=0.158 Sum_probs=129.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---------------------------------------EEEEeccCCC
Q 004885 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFT---------------------------------------VKSTLEEHTQ 598 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~---------------------------------------~i~~l~~H~~ 598 (725)
-+.+.|+.+|++|+.|+..|.|-.+|..+.. .+++++.| .
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~-~ 210 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRH-I 210 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhc-C
Confidence 3456666666666666666666666655443 33334333 4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEE
Q 004885 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV 678 (725)
Q Consensus 599 ~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~ 678 (725)
.|..+.|-|..-+|++++..|.++.-|+.++. .+..+..-.+.+..++-+|-.. ++.+|...|+|.+|.....+++..
T Consensus 211 ~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk-lVa~~~t~~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP~skePLvK 288 (545)
T KOG1272|consen 211 RVARLEFLPYHFLLVAASEAGFLKYQDVSTGK-LVASIRTGAGRTDVMKQNPYNA-VIHLGHSNGTVSLWSPNSKEPLVK 288 (545)
T ss_pred chhhhcccchhheeeecccCCceEEEeechhh-hhHHHHccCCccchhhcCCccc-eEEEcCCCceEEecCCCCcchHHH
Confidence 57788899988889999999999999999998 6777777778899999999866 888999999999999998877766
Q ss_pred Eec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 679 FKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 679 ~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
+-+ .++|.+|++.++|.|+++++.|..|+|||+++...++++.
T Consensus 289 iLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~ 332 (545)
T KOG1272|consen 289 ILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR 332 (545)
T ss_pred HHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceee
Confidence 554 7899999999999999999999999999999987666654
No 241
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=5.3e-10 Score=121.50 Aligned_cols=172 Identities=15% Similarity=0.225 Sum_probs=133.6
Q ss_pred eEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 004885 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (725)
Q Consensus 547 ~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~-------~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dg 619 (725)
.+..+.+|...|+.++--.+.+-+++++.|++|++|.++. ..+-.++..|..+|.++.|-.+.++++++ |+
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 4567889999999998888888999999999999999863 34667888999999999999988888877 89
Q ss_pred eEEEEECCCCCeeeE-EEe-cCCCCeEEEEEcc--CCCeEEEEEeCCCcEEEEECCCCeeEEEEec------CCCeEEEE
Q 004885 620 TVRVWDTENPDYSLR-TFT-GHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------QSGATQMR 689 (725)
Q Consensus 620 tIrvWDl~~~~~~l~-~~~-~h~~~V~sl~fsP--~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~------~~~V~sv~ 689 (725)
.|.+||.--+. .+. ... ...+.+..+..-+ +...+++.|+...+|+++|.+.+..+..++. ..-+.+++
T Consensus 805 giHlWDPFigr-~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 805 GIHLWDPFIGR-LLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred cceeecccccc-hhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 99999986655 222 111 1112222232223 3343455557889999999999888877764 23488999
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 690 FQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 690 fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
+.+.|.+++++-+.|+|.+.|.++|+++.+++
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence 99999999999999999999999999988765
No 242
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.04 E-value=1.5e-09 Score=126.37 Aligned_cols=142 Identities=22% Similarity=0.365 Sum_probs=119.4
Q ss_pred cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004885 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (725)
Q Consensus 507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~ 586 (725)
-++++|+.-+.|-+|....++ ..+ .+.+|.+.|..+.|+-||++++++|+|.++++|++++
T Consensus 146 ~~i~~gsv~~~iivW~~~~dn------------------~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s 206 (967)
T KOG0974|consen 146 LYIASGSVFGEIIVWKPHEDN------------------KPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDS 206 (967)
T ss_pred EEEEeccccccEEEEeccccC------------------Ccc-eecccCCceEEEEEccCCcEEEEEecCcceeeeeccc
Confidence 377888888999999554221 011 6789999999999999999999999999999999999
Q ss_pred CeEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCC-CCeEEEEEccCCCeEEEEEeCCCc
Q 004885 587 FTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSE 664 (725)
Q Consensus 587 ~~~i~-~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~-~~V~sl~fsP~g~~llaSgs~Dg~ 664 (725)
.+... +.-+|+..|..+.|+|+ +++|++.|.+.++|+.+... +..+.+|. ..|+.++..++.. +++|++.|+.
T Consensus 207 ~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~--l~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~ 281 (967)
T KOG0974|consen 207 REVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ--LEVYDEHSGKGIWKIAVPIGVI-IKVTGGNDST 281 (967)
T ss_pred ccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccce--ehhhhhhhhcceeEEEEcCCce-EEEeeccCcc
Confidence 77665 67789999999999998 99999999999999776543 56888886 4689999887755 7889999999
Q ss_pred EEEEECCC
Q 004885 665 IRYWSINN 672 (725)
Q Consensus 665 I~IwDl~t 672 (725)
|++||+..
T Consensus 282 lk~~~l~~ 289 (967)
T KOG0974|consen 282 LKLWDLNG 289 (967)
T ss_pred hhhhhhhc
Confidence 99999864
No 243
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=1.7e-08 Score=114.47 Aligned_cols=163 Identities=19% Similarity=0.204 Sum_probs=113.4
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEE-EeCCCe--EEEE
Q 004885 551 IPASTSKVESCHFSPDGKLLATGGHD-K--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADRT--VRVW 624 (725)
Q Consensus 551 l~~H~~~V~~i~fSpdg~~LaSgs~D-g--~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Las-gs~Dgt--IrvW 624 (725)
+..+...+.+..|+|||+.|+..+.+ + .|++||+.+++... +....+.....+|+||++.|+. .+.++. |.+|
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~ 291 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVV 291 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence 34456678999999999988876543 3 58889998776532 2222334457899999997764 555664 7777
Q ss_pred ECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEc
Q 004885 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI 702 (725)
Q Consensus 625 Dl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg--~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~ 702 (725)
|+.++. +..+..+...+..++|+|+|+.++++...++ .|+++|+.+++..............+|+|||++|+..+.
T Consensus 292 dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~ 369 (448)
T PRK04792 292 DIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNR 369 (448)
T ss_pred ECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEe
Confidence 887765 4455555566788999999998877776554 477778887765443222233456799999999888765
Q ss_pred C-C--eEEEEECCCCeE
Q 004885 703 E-N--YISILDVETQVC 716 (725)
Q Consensus 703 D-g--~V~IwDl~tg~~ 716 (725)
+ + .|.++|+.+++.
T Consensus 370 ~~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 370 TNGKFNIARQDLETGAM 386 (448)
T ss_pred cCCceEEEEEECCCCCe
Confidence 3 3 567789888754
No 244
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.01 E-value=4.4e-08 Score=111.10 Aligned_cols=161 Identities=13% Similarity=0.150 Sum_probs=106.0
Q ss_pred eEEEEEcCCCCEEEE-EeCCCc--EEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEECCCCCe
Q 004885 558 VESCHFSPDGKLLAT-GGHDKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWDTENPDY 631 (725)
Q Consensus 558 V~~i~fSpdg~~LaS-gs~Dg~--V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-Dg--tIrvWDl~~~~~ 631 (725)
....+|+|||+.|+. .+.++. |++||+.+++.. .+..+...+...+|+||+++|+..+. ++ .|.++|+.++.
T Consensus 264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~- 341 (448)
T PRK04792 264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK- 341 (448)
T ss_pred cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-
Confidence 457899999997764 566664 777888776643 45555566778899999998766553 34 46666777665
Q ss_pred eeEEEecCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcC-C--eE
Q 004885 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YI 706 (725)
Q Consensus 632 ~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg--~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~D-g--~V 706 (725)
...+..........+|+|+|+.++++...++ .|.++|+.++.... +..........|+|+|+.|+..+.+ + .|
T Consensus 342 -~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l 419 (448)
T PRK04792 342 -VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTRLDESPSVAPNGTMVIYSTTYQGKQVL 419 (448)
T ss_pred -EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCCCCCCceECCCCCEEEEEEecCCceEE
Confidence 2222222223456799999998777666555 45667888776533 2222223355899999988877653 3 47
Q ss_pred EEEECCCCeEEEEEeCC
Q 004885 707 SILDVETQVCRLKLQVS 723 (725)
Q Consensus 707 ~IwDl~tg~~v~~l~GH 723 (725)
+++++ +|.....+..+
T Consensus 420 ~~~~~-~G~~~~~l~~~ 435 (448)
T PRK04792 420 AAVSI-DGRFKARLPAG 435 (448)
T ss_pred EEEEC-CCCceEECcCC
Confidence 78887 56666666543
No 245
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.01 E-value=6.6e-09 Score=108.31 Aligned_cols=124 Identities=25% Similarity=0.427 Sum_probs=100.4
Q ss_pred eEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----------------------------------------
Q 004885 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---------------------------------------- 586 (725)
Q Consensus 547 ~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~---------------------------------------- 586 (725)
..+....|...|..+.|+-...++++++.|+.+..-..+.
T Consensus 106 ~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~ 185 (404)
T KOG1409|consen 106 FLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQN 185 (404)
T ss_pred hhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeec
Confidence 3455668899999999988888899888887654322211
Q ss_pred -CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcE
Q 004885 587 -FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (725)
Q Consensus 587 -~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I 665 (725)
-..+.++.+|.+.|++++|.|...+|++|..|..|.+||+--.........+|...|..+...+.-. .+++++.||.|
T Consensus 186 ~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~-~l~S~~edg~i 264 (404)
T KOG1409|consen 186 GCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTR-QLISCGEDGGI 264 (404)
T ss_pred CCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhe-eeeeccCCCeE
Confidence 1234567789999999999999999999999999999999877767778889999999998877655 66799999999
Q ss_pred EEEECC
Q 004885 666 RYWSIN 671 (725)
Q Consensus 666 ~IwDl~ 671 (725)
.+||++
T Consensus 265 ~~w~mn 270 (404)
T KOG1409|consen 265 VVWNMN 270 (404)
T ss_pred EEEecc
Confidence 999986
No 246
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=1.6e-09 Score=117.16 Aligned_cols=229 Identities=17% Similarity=0.188 Sum_probs=154.2
Q ss_pred CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCC-CCCCcccccccc-----------------
Q 004885 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA-DPRDRVGRSAEV----------------- 539 (725)
Q Consensus 478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~-~~~~~~~~~~~~----------------- 539 (725)
+..++..+.|+..|. .+++||.|..|.+|.+.... ..+...+++...
T Consensus 141 H~GcVntV~FN~~Gd---------------~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~ 205 (559)
T KOG1334|consen 141 HKGCVNTVHFNQRGD---------------VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTS 205 (559)
T ss_pred CCCccceeeecccCc---------------eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceec
Confidence 445667778887776 89999999999999775542 111111111111
Q ss_pred -----------CCCceeeeEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEe---ccCCC---CeE
Q 004885 540 -----------GKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTL---EEHTQ---WIT 601 (725)
Q Consensus 540 -----------~~~~~~~~~~~l~~H~~~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~~~~~i~~l---~~H~~---~V~ 601 (725)
.........+.+..|.+.|..++.-|+.. -|.+++.|+.|.-+|++...+...+ +.+.. ..+
T Consensus 206 s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~ 285 (559)
T KOG1334|consen 206 SRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLY 285 (559)
T ss_pred cccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeee
Confidence 11112233566778999999999999654 6889999999999999875443322 22333 567
Q ss_pred EEEEcCC-CCEEEEEeCCCeEEEEECCCCCee-----eEEEe------cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEE
Q 004885 602 DVRFSPS-LSRLATSSADRTVRVWDTENPDYS-----LRTFT------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669 (725)
Q Consensus 602 ~IafsPd-~~~Lasgs~DgtIrvWDl~~~~~~-----l~~~~------~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwD 669 (725)
+|+.+|- ...+++++.|-.+++||.+.-... +..|. .....|++++|+.++..++++-. |-.|+++.
T Consensus 286 ~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn-De~IYLF~ 364 (559)
T KOG1334|consen 286 TIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN-DEDIYLFN 364 (559)
T ss_pred eEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec-ccceEEec
Confidence 8999995 458999999999999998753311 12222 22356999999988888887666 66788885
Q ss_pred CCC--C----------eeEE-EEec---CCCeEEEE-EecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885 670 INN--G----------SCAG-VFKC---QSGATQMR-FQPRLGRILAAAIENYISILDVETQVCRLKLQV 722 (725)
Q Consensus 670 l~t--~----------~~v~-~~~~---~~~V~sv~-fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~G 722 (725)
-.- | ..+. .+++ ...|..+- |-|...|+++|+..|.|.||+-.++++|.-++|
T Consensus 365 ~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg 434 (559)
T KOG1334|consen 365 KSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG 434 (559)
T ss_pred cccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhc
Confidence 432 2 1122 2444 23366665 467778999988899999999998876655444
No 247
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.96 E-value=6e-08 Score=107.55 Aligned_cols=144 Identities=19% Similarity=0.228 Sum_probs=122.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEec--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCe
Q 004885 566 DGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV 643 (725)
Q Consensus 566 dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~--~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V 643 (725)
|-..|+-|...|.|.+|++..++....+. .|.+.|.++.++-+-..|.+++.|+.+.+|+..... .++.+.+....+
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-~~~~~~~~~~~~ 147 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-IIRIWKEQKPLV 147 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-eeeeeccCCCcc
Confidence 34468888889999999999998887775 689999999999998999999999999999999877 788888888899
Q ss_pred EEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecC-----CCEEEEEEc-CCeEEEEECCC
Q 004885 644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPR-----LGRILAAAI-ENYISILDVET 713 (725)
Q Consensus 644 ~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspd-----g~~Lla~s~-Dg~V~IwDl~t 713 (725)
.+++.+||+. ++++++ +.|++||+++++.+..|.+ .+.|.++.|-.+ |.+++++.. +..|.+|-++.
T Consensus 148 ~sl~is~D~~-~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 148 SSLCISPDGK-ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ceEEEcCCCC-EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9999999987 666665 7899999999999999998 567999999876 677776644 56677776544
No 248
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.94 E-value=1.7e-06 Score=94.83 Aligned_cols=163 Identities=18% Similarity=0.250 Sum_probs=112.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCe--EE--EEe-ccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECC
Q 004885 555 TSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFT--VK--STL-EEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTE 627 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~-Dg~V~IWdl~~~~--~i--~~l-~~H~~~V~~IafsPd~~~Lasgs-~DgtIrvWDl~ 627 (725)
.....++.|+||+++++++.. ...|++|+++... .. ..+ .........++|+|+++++++.. .+++|.+|++.
T Consensus 143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 355789999999998887643 3479999987644 21 222 23346678999999999886665 47899999998
Q ss_pred CCCeee---EEEec----C--CCCeEEEEEccCCCeEEEEEeCCCcEEEEECC--CCe--eEEEEec-CCCeEEEEEecC
Q 004885 628 NPDYSL---RTFTG----H--STTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--NGS--CAGVFKC-QSGATQMRFQPR 693 (725)
Q Consensus 628 ~~~~~l---~~~~~----h--~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~--t~~--~v~~~~~-~~~V~sv~fspd 693 (725)
.....+ ..+.. . ......|+++|+|++++++...+..|.+|+++ ++. .+..+.. ......+.++|+
T Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~ 302 (345)
T PF10282_consen 223 PSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPD 302 (345)
T ss_dssp TTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TT
T ss_pred ccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCC
Confidence 322112 12211 1 12578999999999999888888999999994 333 3334443 445899999999
Q ss_pred CCEEEEEEc-CCeEEEEEC--CCCeEE
Q 004885 694 LGRILAAAI-ENYISILDV--ETQVCR 717 (725)
Q Consensus 694 g~~Lla~s~-Dg~V~IwDl--~tg~~v 717 (725)
|++|+++.. ++.|.+|++ ++|...
T Consensus 303 g~~l~Va~~~s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 303 GRYLYVANQDSNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp SSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred CCEEEEEecCCCeEEEEEEeCCCCcEE
Confidence 999998876 578999976 577544
No 249
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.91 E-value=1.2e-08 Score=108.41 Aligned_cols=164 Identities=16% Similarity=0.206 Sum_probs=112.8
Q ss_pred ccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 004885 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (725)
Q Consensus 501 ~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~ 580 (725)
...+..++++.+..++..-+++...... +..+.....+......|+.+..+......-.++....+.
T Consensus 69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~-------------~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~d 135 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSSKQRAVFDYRENPK-------------GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFD 135 (390)
T ss_pred ccCCCceEEEEEeCCCceEEEEEecCCC-------------cceeeeEeecccCcceeeeeeccceEEEEeecCCceeee
Confidence 3455566888877777765664333211 111222223333333455555443333333455566777
Q ss_pred EEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEe
Q 004885 581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (725)
Q Consensus 581 IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs 660 (725)
+|.+..+.+. .+-||-..+++|+|+||+.+|+|+..|..|||-.+......-..+.||+..|..++.-++- .|++++
T Consensus 136 i~s~~~~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~--~LlS~s 212 (390)
T KOG3914|consen 136 ILSADSGRCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY--LLLSGS 212 (390)
T ss_pred eecccccCcc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc--eeeecC
Confidence 7777664443 4558999999999999999999999999999988876653334567899999999998763 577999
Q ss_pred CCCcEEEEECCCCeeEEEEe
Q 004885 661 NNSEIRYWSINNGSCAGVFK 680 (725)
Q Consensus 661 ~Dg~I~IwDl~t~~~v~~~~ 680 (725)
.|++|++||+++|+++.++.
T Consensus 213 GD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 213 GDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred CCCcEEEEecccCCcccccc
Confidence 99999999999999887765
No 250
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.90 E-value=2e-08 Score=104.13 Aligned_cols=160 Identities=15% Similarity=0.168 Sum_probs=116.3
Q ss_pred CCeEEEEEcCCCCEEEE-EeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCE-EEEEeCCCeEEEEECCCCCeee
Q 004885 556 SKVESCHFSPDGKLLAT-GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSL 633 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaS-gs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~-Lasgs~DgtIrvWDl~~~~~~l 633 (725)
+.|.-|.|..|..++++ ...|+.|.+|++...+-...+.+...++..++|+|||+. |.+...|-.|.||.+.+...
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~-- 126 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG-- 126 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee--
Confidence 55778899888776655 566889999999988877788888899999999999965 56677899999999998762
Q ss_pred EEEecCCCCeEEEEEccCCCeEEEEEeC------------------------------------CCcEEEEECCCCeeEE
Q 004885 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDN------------------------------------NSEIRYWSINNGSCAG 677 (725)
Q Consensus 634 ~~~~~h~~~V~sl~fsP~g~~llaSgs~------------------------------------Dg~I~IwDl~t~~~v~ 677 (725)
..+.--...+..++|+|+|+. .+.++. +..+.|||---.-.+.
T Consensus 127 ~~~~~pK~~~kg~~f~~dg~f-~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~ 205 (447)
T KOG4497|consen 127 YLLPHPKTNVKGYAFHPDGQF-CAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY 205 (447)
T ss_pred EEecccccCceeEEECCCCce-eeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee
Confidence 222222345688899999873 333321 1234445433222333
Q ss_pred EEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE
Q 004885 678 VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL 718 (725)
Q Consensus 678 ~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~ 718 (725)
.++..-++..+.|+|.+.+|++|+.|+.++|.+--+.+.+.
T Consensus 206 aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ 246 (447)
T KOG4497|consen 206 AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFG 246 (447)
T ss_pred eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehh
Confidence 44446789999999999999999999999998876655443
No 251
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.90 E-value=6e-08 Score=107.50 Aligned_cols=157 Identities=15% Similarity=0.185 Sum_probs=125.9
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeEEEEecc---CCCCeEEEEEc------C--------------CCCEEEEEeCCCeE
Q 004885 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEE---HTQWITDVRFS------P--------------SLSRLATSSADRTV 621 (725)
Q Consensus 565 pdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~---H~~~V~~Iafs------P--------------d~~~Lasgs~DgtI 621 (725)
|-..++|....||.++|||+...+....|.. -++..++..|. | +-..++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 3456899999999999999987766555432 13445555552 1 22357778889999
Q ss_pred EEEECCCCCeeeEEE--ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEE
Q 004885 622 RVWDTENPDYSLRTF--TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRIL 698 (725)
Q Consensus 622 rvWDl~~~~~~l~~~--~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Ll 698 (725)
-+|++..++ ....+ .+|.+.|.++.++.+-. .|.+++.|+.|..|+...+..++.++. ...+.+++.+||+..++
T Consensus 83 ~~ys~~~g~-it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 83 LLYSVAGGE-ITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred EEEEecCCe-EEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence 999999887 33444 47999999999988766 566999999999999999999999987 66799999999998888
Q ss_pred EEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885 699 AAAIENYISILDVETQVCRLKLQVSHS 725 (725)
Q Consensus 699 a~s~Dg~V~IwDl~tg~~v~~l~GH~s 725 (725)
+++ +.|++||+++++.+.+|.||.+
T Consensus 161 ~as--~~ik~~~~~~kevv~~ftgh~s 185 (541)
T KOG4547|consen 161 TAS--RQIKVLDIETKEVVITFTGHGS 185 (541)
T ss_pred ecc--ceEEEEEccCceEEEEecCCCc
Confidence 775 6899999999999999999965
No 252
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.88 E-value=3.5e-07 Score=94.95 Aligned_cols=140 Identities=19% Similarity=0.273 Sum_probs=101.4
Q ss_pred CCCEEEEEe-CCCcEEEEECCCCeE--EEEeccCCCCeEEEEEcCCCCEEEEEeCCCe-EEEEECCCCCeeeEEEec--C
Q 004885 566 DGKLLATGG-HDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRT-VRVWDTENPDYSLRTFTG--H 639 (725)
Q Consensus 566 dg~~LaSgs-~Dg~V~IWdl~~~~~--i~~l~~H~~~V~~IafsPd~~~Lasgs~Dgt-IrvWDl~~~~~~l~~~~~--h 639 (725)
+..+||.-| .-|.|.|-|+...+. ...+.+|.+.|.||+.+-+|.+|||++..|+ |||||..+++ .+..++. .
T Consensus 147 ~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~-~l~E~RRG~d 225 (346)
T KOG2111|consen 147 NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGT-LLQELRRGVD 225 (346)
T ss_pred CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCc-EeeeeecCCc
Confidence 334555433 458999999976544 4678899999999999999999999999886 7999999998 5655542 2
Q ss_pred CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEE------------------------EEec-CCCeEEEEEecCC
Q 004885 640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG------------------------VFKC-QSGATQMRFQPRL 694 (725)
Q Consensus 640 ~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~------------------------~~~~-~~~V~sv~fspdg 694 (725)
...|.+++|+|+.. +||++++.|+|+||.++....-. .+.. .+...-++|..+-
T Consensus 226 ~A~iy~iaFSp~~s-~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~ 304 (346)
T KOG2111|consen 226 RADIYCIAFSPNSS-WLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSET 304 (346)
T ss_pred hheEEEEEeCCCcc-EEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCC
Confidence 35699999999987 67788889999999987422110 0111 2334455666665
Q ss_pred CEEEEEEcCCeEE
Q 004885 695 GRILAAAIENYIS 707 (725)
Q Consensus 695 ~~Lla~s~Dg~V~ 707 (725)
..+++.+.||.-+
T Consensus 305 nsvi~i~~Dgsy~ 317 (346)
T KOG2111|consen 305 NTVIAICADGSYY 317 (346)
T ss_pred CeEEEEEeCCcEE
Confidence 6677777777654
No 253
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=4.8e-09 Score=113.44 Aligned_cols=170 Identities=21% Similarity=0.342 Sum_probs=140.2
Q ss_pred eeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-ccCCCCeEEEEEcC--CCCEEEEEeCCCeE
Q 004885 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTV 621 (725)
Q Consensus 545 ~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l-~~H~~~V~~IafsP--d~~~Lasgs~DgtI 621 (725)
+.....|..|.+-|..|.|+..|..|++||.|..|.+||.........+ .+|...|.--.|-| +...|++++.||.|
T Consensus 132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 3455678899999999999999999999999999999999887766555 57888888888988 45679999999999
Q ss_pred EEEECCCCCeee--EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec----CC---CeEEEEEec
Q 004885 622 RVWDTENPDYSL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QS---GATQMRFQP 692 (725)
Q Consensus 622 rvWDl~~~~~~l--~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~----~~---~V~sv~fsp 692 (725)
++=.+...+++. ..+..|.+.|..++..|+..+-|.+|+.|+.|.-+|++.+.....+.+ .. ....|+..|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 998887655333 455679999999999999999999999999999999998766555543 22 468889999
Q ss_pred CCC-EEEEEEcCCeEEEEECCCC
Q 004885 693 RLG-RILAAAIENYISILDVETQ 714 (725)
Q Consensus 693 dg~-~Lla~s~Dg~V~IwDl~tg 714 (725)
... .+++++.|-.++|||.+.-
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~ 314 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRI 314 (559)
T ss_pred CCccccccCChhhhhhhhcccch
Confidence 877 5777788999999998753
No 254
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.85 E-value=2.8e-08 Score=102.28 Aligned_cols=204 Identities=17% Similarity=0.283 Sum_probs=136.3
Q ss_pred CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC------------CCCeEEEEEcCCCC--EE
Q 004885 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS------------TSKVESCHFSPDGK--LL 570 (725)
Q Consensus 505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H------------~~~V~~i~fSpdg~--~L 570 (725)
.+.|+++|...|.|.+|.-.... +..++.+..+.+| ...|..|.|..++. .+
T Consensus 37 tg~YlatGDkgGRVvlfer~~s~--------------~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 37 TGLYLATGDKGGRVVLFEREKSY--------------GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred ccceEeecCCCceEEEeeccccc--------------ccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence 33499999999999999322221 1112222222222 25688899976543 56
Q ss_pred EEEeCCCcEEEEECCCCe-------------------------------------EE-----EEe-ccCCCCeEEEEEcC
Q 004885 571 ATGGHDKKAVLWCTESFT-------------------------------------VK-----STL-EEHTQWITDVRFSP 607 (725)
Q Consensus 571 aSgs~Dg~V~IWdl~~~~-------------------------------------~i-----~~l-~~H~~~V~~IafsP 607 (725)
+..+.|++|++|.+.... .+ +++ ..|..-|.+|.|..
T Consensus 103 LlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns 182 (460)
T COG5170 103 LLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS 182 (460)
T ss_pred EEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence 667789999999763210 00 111 34677788999998
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCe--eeEEEecCC-----CCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe-eEE--
Q 004885 608 SLSRLATSSADRTVRVWDTENPDY--SLRTFTGHS-----TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAG-- 677 (725)
Q Consensus 608 d~~~Lasgs~DgtIrvWDl~~~~~--~l~~~~~h~-----~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~-~v~-- 677 (725)
|...++++ .|-.|.+|+++-... .+..++.|. ..|++..|+|....++...+..|.|++-|++... |..
T Consensus 183 D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~ 261 (460)
T COG5170 183 DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK 261 (460)
T ss_pred chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence 87777766 477899999876543 344455554 4589999999877777777779999999998422 111
Q ss_pred -EE----e--------c-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEEeCCC
Q 004885 678 -VF----K--------C-QSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQVSH 724 (725)
Q Consensus 678 -~~----~--------~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg-~~v~~l~GH~ 724 (725)
.+ . . ...|..+.|+++|+++++ -.--+|+|||++.. .|++++.-|.
T Consensus 262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIls-RdyltvkiwDvnm~k~pikTi~~h~ 322 (460)
T COG5170 262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILS-RDYLTVKIWDVNMAKNPIKTIPMHC 322 (460)
T ss_pred hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEE-eccceEEEEecccccCCceeechHH
Confidence 01 0 0 245788999999887764 34478999999875 7888887663
No 255
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.84 E-value=6.1e-08 Score=99.49 Aligned_cols=171 Identities=20% Similarity=0.201 Sum_probs=119.0
Q ss_pred ceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC-CCeEEEE-eccCCCCeEEEEEcC-CCCEEEEEeCC
Q 004885 543 FTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE-SFTVKST-LEEHTQWITDVRFSP-SLSRLATSSAD 618 (725)
Q Consensus 543 ~~~~~~~~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~-~~~~i~~-l~~H~~~V~~IafsP-d~~~Lasgs~D 618 (725)
..++.+...++|..++..+.|+. +-+++++|+.|+.+..||++ ..+.+.. .+-|...|.+|.-+| ...+|+||+.|
T Consensus 153 ~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYD 232 (339)
T KOG0280|consen 153 MVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYD 232 (339)
T ss_pred eeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccc
Confidence 34455668889999999999986 45689999999999999998 3444443 567899999998887 57899999999
Q ss_pred CeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCe-EEEEEeCCCcEEEEECCCCeeE--EEEecCCC----eEEEEEe
Q 004885 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-LLCSCDNNSEIRYWSINNGSCA--GVFKCQSG----ATQMRFQ 691 (725)
Q Consensus 619 gtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~-llaSgs~Dg~I~IwDl~t~~~v--~~~~~~~~----V~sv~fs 691 (725)
..|++||.++...++..-. -.+.|+.++++|.... ++++|..+| .+|.++..+... ..+..... +..-.|.
T Consensus 233 e~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd 310 (339)
T KOG0280|consen 233 ECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWD 310 (339)
T ss_pred cceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccc
Confidence 9999999997664554432 3478999999997443 455665554 778877654333 12222222 3444453
Q ss_pred cCCCEEEEEEc-CCeEE-EEECCCCe
Q 004885 692 PRLGRILAAAI-ENYIS-ILDVETQV 715 (725)
Q Consensus 692 pdg~~Lla~s~-Dg~V~-IwDl~tg~ 715 (725)
.....|++|+. |+.|+ +|-.-|+.
T Consensus 311 ~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 311 SKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred cccceeeeeeccccceeeeeeeccCC
Confidence 33345666654 67655 77655543
No 256
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.84 E-value=1.9e-06 Score=93.82 Aligned_cols=162 Identities=13% Similarity=0.080 Sum_probs=113.1
Q ss_pred eEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeEEEEecc----------------C---C------------CCeEEE-
Q 004885 558 VESCHFSPDGKLLATGGH--DKKAVLWCTESFTVKSTLEE----------------H---T------------QWITDV- 603 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~--Dg~V~IWdl~~~~~i~~l~~----------------H---~------------~~V~~I- 603 (725)
-..++++|||++|++... +..|.|.|+.+++.+..+.- | . ..+...
T Consensus 107 ~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~ 186 (352)
T TIGR02658 107 PWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTE 186 (352)
T ss_pred cceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeee
Confidence 347888999998887653 67899999887665543210 0 0 001111
Q ss_pred -------------EEcC-CCCEEEEEeCCCeEEEEECCCCCe----eeEEEec-------CCCCeEEEEEccCCCeEEEE
Q 004885 604 -------------RFSP-SLSRLATSSADRTVRVWDTENPDY----SLRTFTG-------HSTTVMSLDFHPSKEDLLCS 658 (725)
Q Consensus 604 -------------afsP-d~~~Lasgs~DgtIrvWDl~~~~~----~l~~~~~-------h~~~V~sl~fsP~g~~llaS 658 (725)
.|.+ +++++++... |+|.+.|+..... .+..+.. ..+.+.-++++|+++.+++.
T Consensus 187 vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~ 265 (352)
T TIGR02658 187 VFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLL 265 (352)
T ss_pred eecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEE
Confidence 1223 6777766665 9999999654331 1222211 12334459999999988875
Q ss_pred Ee---------CCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCC-EEEEEE-cCCeEEEEECCCCeEEEEE
Q 004885 659 CD---------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG-RILAAA-IENYISILDVETQVCRLKL 720 (725)
Q Consensus 659 gs---------~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~-~Lla~s-~Dg~V~IwDl~tg~~v~~l 720 (725)
.. ..+.|.++|..+++.+..+.....+..|+|+||++ +|++.. .++.|.|+|+.+++.++++
T Consensus 266 ~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 266 ADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred ecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 42 22589999999999999999888999999999999 777666 4788999999999999988
No 257
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.82 E-value=3.5e-08 Score=105.05 Aligned_cols=159 Identities=10% Similarity=0.125 Sum_probs=116.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCe----EEEEeccCCCCeEEEEEcCCCCEEEEEe---CCCeEEEEECCCCC
Q 004885 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSS---ADRTVRVWDTENPD 630 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~----~i~~l~~H~~~V~~IafsPd~~~Lasgs---~DgtIrvWDl~~~~ 630 (725)
+..+.+++++++||++..++...++++.... .+.++.. ...-+.+.|..+...+..+. ....+.+|....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-- 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-- 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccc--
Confidence 4556678888899988888887777765422 2222222 23344555555555544443 344566666655
Q ss_pred eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe--cCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 004885 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISI 708 (725)
Q Consensus 631 ~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~--~~~~V~sv~fspdg~~Lla~s~Dg~V~I 708 (725)
.+.+.+.||-.-++.|+|+||+. ++++++.|..|||-.......+..|. |..-|..++.-++ ..|++++.|++|++
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRL 219 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEE
Confidence 25677789999999999999987 77799999999998887766666554 3566999998887 66899999999999
Q ss_pred EECCCCeEEEEEe
Q 004885 709 LDVETQVCRLKLQ 721 (725)
Q Consensus 709 wDl~tg~~v~~l~ 721 (725)
||+++|++++++.
T Consensus 220 Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 220 WDITSGKLLDTCD 232 (390)
T ss_pred EecccCCcccccc
Confidence 9999999987764
No 258
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.81 E-value=2.3e-07 Score=104.53 Aligned_cols=136 Identities=17% Similarity=0.132 Sum_probs=96.0
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCCcEEEE--ECCC-CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCC
Q 004885 556 SKVESCHFSPDGKLLATGG-HDKKAVLW--CTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTEN 628 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs-~Dg~V~IW--dl~~-~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D---gtIrvWDl~~ 628 (725)
+.+...+|+|||+.|+..+ .++...|| ++.. +.....+..+...+....|+||+++|+..+.+ ..|.+||+.+
T Consensus 281 ~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 281 GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT 360 (428)
T ss_pred CCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 3456789999999777655 46655555 4432 23344455555677889999999988876543 4699999988
Q ss_pred CCeeeEEEecCCCCeEEEEEccCCCeEEEEEeC--CCcEEEEECCCCeeEEEEecCCCeEEEEEecC
Q 004885 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFKCQSGATQMRFQPR 693 (725)
Q Consensus 629 ~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~--Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspd 693 (725)
+. ...+......+..+.|+|+|+.+++++.. ...|++||+.+++........+.+...+|+|.
T Consensus 361 g~--~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 361 GR--DYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred CC--eEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCC
Confidence 76 33443334467889999999987776653 34688999998877666655566778889875
No 259
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.81 E-value=1.1e-06 Score=97.07 Aligned_cols=197 Identities=13% Similarity=0.115 Sum_probs=127.6
Q ss_pred CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEC
Q 004885 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCT 584 (725)
Q Consensus 506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs-~Dg~V~IWdl 584 (725)
.+++.+.+.|+.|.+++.. +.+.+..++... ...++++|+||++++++. .++.|.|+|.
T Consensus 48 gr~~yv~~rdg~vsviD~~-------------------~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~ 107 (369)
T PF02239_consen 48 GRYLYVANRDGTVSVIDLA-------------------TGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDA 107 (369)
T ss_dssp SSEEEEEETTSEEEEEETT-------------------SSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEET
T ss_pred CCEEEEEcCCCeEEEEECC-------------------cccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEecc
Confidence 3477777889999999432 224555554433 468899999999888765 6899999999
Q ss_pred CCCeEEEEeccC-------CCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEE
Q 004885 585 ESFTVKSTLEEH-------TQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656 (725)
Q Consensus 585 ~~~~~i~~l~~H-------~~~V~~IafsPd~~~Lasgs~-DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~ll 656 (725)
++.+.+..+... ...+..|..+|....++..-. .+.|-+.|......................|+|++++++
T Consensus 108 ~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~ 187 (369)
T PF02239_consen 108 ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFL 187 (369)
T ss_dssp TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEE
T ss_pred ccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceee
Confidence 999988877532 346788888888775655544 478888898776544444444556788999999999888
Q ss_pred EEEeCCCcEEEEECCCCeeEEEEec-----CCCeEEEEEecCC----------CEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 657 CSCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQPRL----------GRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 657 aSgs~Dg~I~IwDl~t~~~v~~~~~-----~~~V~sv~fspdg----------~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
++...+..|-++|..+++.+..+.. ..++..+ .+|.. ...++.-..+.+.+||..+.+.+++++
T Consensus 188 va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~ 266 (369)
T PF02239_consen 188 VAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIP 266 (369)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE
T ss_pred ecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEE
Confidence 8877788999999999988877653 1223322 23322 222233334567789999999999887
Q ss_pred CC
Q 004885 722 VS 723 (725)
Q Consensus 722 GH 723 (725)
..
T Consensus 267 ~~ 268 (369)
T PF02239_consen 267 TQ 268 (369)
T ss_dssp -S
T ss_pred CC
Confidence 53
No 260
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=2.7e-07 Score=101.84 Aligned_cols=151 Identities=21% Similarity=0.263 Sum_probs=110.7
Q ss_pred EEEEcCCCC-E--EEEEeCCC---------cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe--CCCeEEEEE
Q 004885 560 SCHFSPDGK-L--LATGGHDK---------KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS--ADRTVRVWD 625 (725)
Q Consensus 560 ~i~fSpdg~-~--LaSgs~Dg---------~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs--~DgtIrvWD 625 (725)
.+.|++-|. + |++..-|+ ++++.++....+...+. ..++|.++.|+|+++-++++- .-.++.|||
T Consensus 222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifn 300 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFN 300 (566)
T ss_pred EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEc
Confidence 466777665 2 23333344 68888887545544444 479999999999998776653 456899999
Q ss_pred CCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeC--CCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEc-
Q 004885 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI- 702 (725)
Q Consensus 626 l~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~--Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~- 702 (725)
++-. ++..|. .++=+++-|+|.|+.++++|-. -|.|-|||+.+.+++..++. ...+-+.|+|||.++++++.
T Consensus 301 lr~~--~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a-~~tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 301 LRGK--PVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA-ANTTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred CCCC--EeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc-CCceEEEEcCCCcEEEEEecc
Confidence 9843 344443 4666889999999966655533 47899999999999998886 45677889999999999876
Q ss_pred -----CCeEEEEECCCCeEE
Q 004885 703 -----ENYISILDVETQVCR 717 (725)
Q Consensus 703 -----Dg~V~IwDl~tg~~v 717 (725)
|+.++||+.. |..+
T Consensus 376 PRlrvdNg~Kiwhyt-G~~l 394 (566)
T KOG2315|consen 376 PRLRVDNGIKIWHYT-GSLL 394 (566)
T ss_pred ccEEecCCeEEEEec-Ccee
Confidence 7899999975 4444
No 261
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.80 E-value=2.1e-08 Score=112.77 Aligned_cols=177 Identities=16% Similarity=0.217 Sum_probs=133.3
Q ss_pred EEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCC-CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004885 549 QLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (725)
Q Consensus 549 ~~l~~H~~~V~~i~fSpdg-~~LaSgs~Dg~V~IWdl~~-~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl 626 (725)
..+.+|+..|+++-|+|.. ..+++|+-|..|..||+++ ..++..+..-...-..|+|+.....+++.+...-|+|||+
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~ 187 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDL 187 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEec
Confidence 3567999999999999954 4899999999999999987 3455555544566788999886666667777888999999
Q ss_pred CCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe--eEEEEecCCCeEEEEEecCCCEEEE--EEc
Q 004885 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKCQSGATQMRFQPRLGRILA--AAI 702 (725)
Q Consensus 627 ~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~--~v~~~~~~~~V~sv~fspdg~~Lla--~s~ 702 (725)
+.+..++..+++|...|..++|.......+.+++.|++|++||..... ..+......+|..-++-|-|.-+++ ...
T Consensus 188 r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G 267 (1081)
T KOG0309|consen 188 RKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVG 267 (1081)
T ss_pred cCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccC
Confidence 999989999999999999999987655567799999999999987543 3334444566777777775543222 222
Q ss_pred CCeEE---------EEECCCC-eEEEEEeCCCC
Q 004885 703 ENYIS---------ILDVETQ-VCRLKLQVSHS 725 (725)
Q Consensus 703 Dg~V~---------IwDl~tg-~~v~~l~GH~s 725 (725)
++.|. .|++.++ +.|++|.||+.
T Consensus 268 ~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D 300 (1081)
T KOG0309|consen 268 GNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD 300 (1081)
T ss_pred CeeeeeccccchhhhhccccCCcceeeecCcch
Confidence 33444 4444444 89999999974
No 262
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.79 E-value=1.1e-07 Score=99.29 Aligned_cols=160 Identities=17% Similarity=0.285 Sum_probs=117.0
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC---eEEEEeccC-----CCCeEEEEEcCC-CCEEEEEeCCCeEE
Q 004885 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEH-----TQWITDVRFSPS-LSRLATSSADRTVR 622 (725)
Q Consensus 552 ~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~---~~i~~l~~H-----~~~V~~IafsPd-~~~Lasgs~DgtIr 622 (725)
.+|+-.|.+|.++.|...++++. |=.|.+|+++-. -.+..++.+ +..|++..|||. ...|+-++..|+|+
T Consensus 161 NaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred ccceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 47999999999999999998874 788999998531 122223333 467899999995 56777888899999
Q ss_pred EEECCCCCeeeE---------------EEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC-CCeeEEEEecC----
Q 004885 623 VWDTENPDYSLR---------------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKCQ---- 682 (725)
Q Consensus 623 vWDl~~~~~~l~---------------~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~-t~~~v~~~~~~---- 682 (725)
+.|++....|.. .|.+-...|..+.|++.|++++ +-+ =-+|++||+. ..+++.++..+
T Consensus 240 LcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryil-sRD-yltvk~wD~nme~~pv~t~~vh~~lr 317 (433)
T KOG1354|consen 240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYIL-SRD-YLTVKLWDLNMEAKPVETYPVHEYLR 317 (433)
T ss_pred EeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEE-Eec-cceeEEEeccccCCcceEEeehHhHH
Confidence 999985432211 1222335689999999999655 443 3689999994 45566555421
Q ss_pred ---------CC---eEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885 683 ---------SG---ATQMRFQPRLGRILAAAIENYISILDVETQ 714 (725)
Q Consensus 683 ---------~~---V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg 714 (725)
.. -..++|+.++.++++|+..+.++||++..|
T Consensus 318 ~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 318 SKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred HHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 11 256889999999999999999999997655
No 263
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.78 E-value=2.5e-06 Score=93.52 Aligned_cols=157 Identities=13% Similarity=0.136 Sum_probs=113.5
Q ss_pred CCeEEEEEcCCCCEEEEEeC----CCcEEEEECCCC--e--EEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEC
Q 004885 556 SKVESCHFSPDGKLLATGGH----DKKAVLWCTESF--T--VKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDT 626 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~----Dg~V~IWdl~~~--~--~i~~l~~H~~~V~~IafsPd~~~Lasgs~-DgtIrvWDl 626 (725)
.....++++|++++|+++.+ ++.|..|.+... . .+............|+++|++++|+++.. +++|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 44677899999999998877 468999988653 3 33333333456678999999999999985 889999999
Q ss_pred CCCCeeeEE---Ee----------cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe--eE--EEE--ecCCCeEE
Q 004885 627 ENPDYSLRT---FT----------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CA--GVF--KCQSGATQ 687 (725)
Q Consensus 627 ~~~~~~l~~---~~----------~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~--~v--~~~--~~~~~V~s 687 (725)
......... +. .......++.|+|++++++++.-....|++|++.... .. ..+ ....+...
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 875422221 11 1235578999999999888776666789999998654 32 222 23677899
Q ss_pred EEEecCCCEEEEEEc-CCeEEEEECC
Q 004885 688 MRFQPRLGRILAAAI-ENYISILDVE 712 (725)
Q Consensus 688 v~fspdg~~Lla~s~-Dg~V~IwDl~ 712 (725)
++|+|+++++++... ++.|.+|++.
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeec
Confidence 999999999888776 7899999998
No 264
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.73 E-value=5.4e-08 Score=100.99 Aligned_cols=140 Identities=16% Similarity=0.276 Sum_probs=111.9
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCCeeeEEEec
Q 004885 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTG 638 (725)
Q Consensus 560 ~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasg-s~DgtIrvWDl~~~~~~l~~~~~ 638 (725)
-++|||+|++||+++.- .+.|-|.++......+.. -..|..|.|.-|..+++.+ ..|+.|.+|++..++. ...+..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-YCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeeccee-EEEecc
Confidence 57899999999999865 888999887665544432 3567788999887776554 5688999999998873 445555
Q ss_pred CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEc
Q 004885 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI 702 (725)
Q Consensus 639 h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~ 702 (725)
...++.+++|+|+|+.++.+..-|-.|.||.+.+.++...--.+..+..++|+|||++.+.++.
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sR 153 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSR 153 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeec
Confidence 6678999999999999999999999999999998877665544677899999999988776654
No 265
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.69 E-value=5.2e-06 Score=103.11 Aligned_cols=156 Identities=13% Similarity=0.138 Sum_probs=110.8
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEeccC---------------CCCeEEEEEcCCCCEEEEE-eCCCeE
Q 004885 559 ESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEH---------------TQWITDVRFSPSLSRLATS-SADRTV 621 (725)
Q Consensus 559 ~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H---------------~~~V~~IafsPd~~~Lasg-s~DgtI 621 (725)
.+++|+| ++.++++.+.++.|++||..++... .+.+. -.....|+|+|++.+|+++ ..++.|
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I 764 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI 764 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence 5899999 5666677778899999998776543 22111 1234679999998865544 557899
Q ss_pred EEEECCCCCeeeEE------------EecC--------CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec
Q 004885 622 RVWDTENPDYSLRT------------FTGH--------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 681 (725)
Q Consensus 622 rvWDl~~~~~~l~~------------~~~h--------~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~ 681 (725)
++||+.++...+.. +..+ -.....|+|+++|. ++++...+++|++||..++.+......
T Consensus 765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG~ 843 (1057)
T PLN02919 765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAGT 843 (1057)
T ss_pred EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEecc
Confidence 99999876522111 0000 11236889999987 777888899999999998776544321
Q ss_pred C--------------CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 004885 682 Q--------------SGATQMRFQPRLGRILAAAIENYISILDVETQVC 716 (725)
Q Consensus 682 ~--------------~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~ 716 (725)
. .....|+++++|..+++-+.++.|++||+++++.
T Consensus 844 G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 844 GKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 1 1467899999998777777789999999999865
No 266
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.66 E-value=6e-06 Score=92.82 Aligned_cols=155 Identities=10% Similarity=0.045 Sum_probs=108.6
Q ss_pred CeEEEEEcCCCCE-EEEEeCC---CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEE-EeCC--CeEEEEECCCC
Q 004885 557 KVESCHFSPDGKL-LATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSAD--RTVRVWDTENP 629 (725)
Q Consensus 557 ~V~~i~fSpdg~~-LaSgs~D---g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Las-gs~D--gtIrvWDl~~~ 629 (725)
.+....|+|||+. ++..+.+ ..|+++|+.+++...... ..+.+...+|+||++.|+. .+.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6789999999984 6654443 468899998876654443 4556777889999987654 3333 46777888776
Q ss_pred CeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcC----
Q 004885 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE---- 703 (725)
Q Consensus 630 ~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg--~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~D---- 703 (725)
. ...+..+........|+|||+.++++.+..+ .|+++|+.+++......... ....|+|||++|+..+..
T Consensus 268 ~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~~ 343 (419)
T PRK04043 268 T--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--NNSSVSTYKNYIVYSSRETNNE 343 (419)
T ss_pred c--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC--cCceECCCCCEEEEEEcCCCcc
Confidence 5 3444444443456789999998888776544 58888998877644433211 235899999998887653
Q ss_pred -----CeEEEEECCCCeE
Q 004885 704 -----NYISILDVETQVC 716 (725)
Q Consensus 704 -----g~V~IwDl~tg~~ 716 (725)
..|.+.|+.++..
T Consensus 344 ~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 344 FGKNTFNLYLISTNSDYI 361 (419)
T ss_pred cCCCCcEEEEEECCCCCe
Confidence 3688899988854
No 267
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=5.7e-08 Score=104.37 Aligned_cols=200 Identities=17% Similarity=0.150 Sum_probs=144.5
Q ss_pred CCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEE
Q 004885 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLW 582 (725)
Q Consensus 504 ~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~-Dg~V~IW 582 (725)
.+..|+.+++.|+.++.|.-. ...-...+..+..|-+.|.+++.+-++.+++|.+. |+.++++
T Consensus 18 tka~fiiqASlDGh~KFWkKs----------------~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 18 TKAKFIIQASLDGHKKFWKKS----------------RISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred ehhheEEeeecchhhhhcCCC----------------CccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEE
Confidence 344699999999999999211 01234566778899999999999999999999777 9999999
Q ss_pred ECCCCeEEEEec--cCCCCeEEEEEcCCC--CEEEEE-eCCCeEEEEECCCCCeeeEEE-ecCCCCeEEEEEccCCCeEE
Q 004885 583 CTESFTVKSTLE--EHTQWITDVRFSPSL--SRLATS-SADRTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLL 656 (725)
Q Consensus 583 dl~~~~~i~~l~--~H~~~V~~IafsPd~--~~Lasg-s~DgtIrvWDl~~~~~~l~~~-~~h~~~V~sl~fsP~g~~ll 656 (725)
|+++...+..++ .-.+.+. +..++.. ..|+++ -.++.|.|+|-.........+ .-|..+|.++.+.+.+. .+
T Consensus 82 DvEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D-s~ 159 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD-SA 159 (558)
T ss_pred EeeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc-ce
Confidence 998765443322 1122222 2223321 134443 347889999987665333333 45889999999999988 55
Q ss_pred EEEeCCCcEEEEECCC------CeeEEEEe----------cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 004885 657 CSCDNNSEIRYWSINN------GSCAGVFK----------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 720 (725)
Q Consensus 657 aSgs~Dg~I~IwDl~t------~~~v~~~~----------~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l 720 (725)
++.+..|-|..|.... .+....++ +....+++.|+|++..+.+-+.|..|+++++++|+.+..+
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 6888889999999872 22222222 3456899999999999999999999999999999888766
Q ss_pred e
Q 004885 721 Q 721 (725)
Q Consensus 721 ~ 721 (725)
.
T Consensus 240 D 240 (558)
T KOG0882|consen 240 D 240 (558)
T ss_pred h
Confidence 4
No 268
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.59 E-value=1.5e-05 Score=89.59 Aligned_cols=155 Identities=14% Similarity=0.100 Sum_probs=101.1
Q ss_pred CCCCeEEEEEcCCCCEEEE-EeCC--CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEECC
Q 004885 554 STSKVESCHFSPDGKLLAT-GGHD--KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWDTE 627 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaS-gs~D--g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-Dg--tIrvWDl~ 627 (725)
..+.+.+..|+|||+.|+. .+.+ ..|.++|+.++... .+..+........|+||++.|+-.+. .+ .|.+.|+.
T Consensus 231 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~ 309 (419)
T PRK04043 231 SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN 309 (419)
T ss_pred CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECC
Confidence 3455677889999986654 3333 46888888777643 44444443455689999987766553 33 57788888
Q ss_pred CCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC--------CcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEE
Q 004885 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILA 699 (725)
Q Consensus 628 ~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D--------g~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla 699 (725)
++.....++.+. ....|+|+|+.+++++..+ ..|.+.|+.++.... +..........|+|||+.|+.
T Consensus 310 ~g~~~rlt~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~~~~~p~~SPDG~~I~f 384 (419)
T PRK04043 310 SGSVEQVVFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTANGVNQFPRFSSDGGSIMF 384 (419)
T ss_pred CCCeEeCccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCCCCcCCeEECCCCCEEEE
Confidence 766312222221 1248999999887776543 368888998876543 332233446889999998877
Q ss_pred EEcC---CeEEEEECCCC
Q 004885 700 AAIE---NYISILDVETQ 714 (725)
Q Consensus 700 ~s~D---g~V~IwDl~tg 714 (725)
.+.+ ..|.++++...
T Consensus 385 ~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 385 IKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEccCCcEEEEEEecCCC
Confidence 7653 34778888653
No 269
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=1.3e-06 Score=96.52 Aligned_cols=134 Identities=17% Similarity=0.240 Sum_probs=100.4
Q ss_pred CCCCeEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCC
Q 004885 554 STSKVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTEN 628 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSg--s~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D---gtIrvWDl~~ 628 (725)
..++|.|+.|+|+++-++++ -.=-+|.|||++ +.++..+. .++-+++-|+|.|++|+.++.+ |.|-|||+.+
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN 345 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence 36899999999999866554 445689999986 45554553 5778899999999999999875 7899999999
Q ss_pred CCeeeEEEecCCCCeEEEEEccCCCeEEEEEe-----CCCcEEEEECCCCeeEEEEecCCCeEEEEEecCC
Q 004885 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL 694 (725)
Q Consensus 629 ~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs-----~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg 694 (725)
.+ ++..+.... .+-++|+|+|.+++.+.+ .|..|+||+.. |..+...........++|-|..
T Consensus 346 ~K-~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f~sEL~qv~W~P~~ 412 (566)
T KOG2315|consen 346 RK-LIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMFKSELLQVEWRPFN 412 (566)
T ss_pred hh-hccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-CceeehhhhhHhHhheeeeecC
Confidence 66 677776543 456899999997664333 37789999987 6666554433367788887653
No 270
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.58 E-value=6.2e-06 Score=83.99 Aligned_cols=205 Identities=11% Similarity=0.044 Sum_probs=130.4
Q ss_pred cccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC-CCEEEEEe
Q 004885 496 TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGG 574 (725)
Q Consensus 496 a~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpd-g~~LaSgs 574 (725)
.+....+-....+|+.|+.-+...+|...... + .......|...|+-+.=.-| .-.+..++
T Consensus 74 ~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~--------------~----h~~~cd~snn~v~~~~r~cd~~~~~~i~s 135 (344)
T KOG4532|consen 74 TFTPGSFINKCVTLADGGASGQFDLFACNTND--------------G----HLYQCDVSNNDVTLVKRYCDLKFPLNIAS 135 (344)
T ss_pred cccchHhhccccEEEeccccceeeeecccCcc--------------c----ceeeecccccchhhhhhhcccccceeecc
Confidence 33334444555689999999999999433221 0 11111222222221111111 12467778
Q ss_pred CCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-eeE-EEecCCCCeEEEEEccCC
Q 004885 575 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLR-TFTGHSTTVMSLDFHPSK 652 (725)
Q Consensus 575 ~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~-~l~-~~~~h~~~V~sl~fsP~g 652 (725)
.|.++++++++.+.....+.-..-.+..++++++++++++.+....|..|.++.... .+. ........-.+..|+...
T Consensus 136 ndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~ 215 (344)
T KOG4532|consen 136 NDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND 215 (344)
T ss_pred CCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc
Confidence 888898888865433322221112388999999999999999999999999987553 233 233344556778898875
Q ss_pred CeEEEEEeCCCcEEEEECCCCeeEEEEe------cCCCeEEEEEecCCC--EEEEEEcCCeEEEEECCCCeEEEE
Q 004885 653 EDLLCSCDNNSEIRYWSINNGSCAGVFK------CQSGATQMRFQPRLG--RILAAAIENYISILDVETQVCRLK 719 (725)
Q Consensus 653 ~~llaSgs~Dg~I~IwDl~t~~~v~~~~------~~~~V~sv~fspdg~--~Lla~s~Dg~V~IwDl~tg~~v~~ 719 (725)
. .+|++..||++.|||++.-......+ +.+.+..+.|++.|. .|+..-.-+.+.|.|+++++-...
T Consensus 216 ~-~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 216 L-QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV 289 (344)
T ss_pred c-eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE
Confidence 5 88899999999999999643332221 357799999998654 333333357899999999865443
No 271
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.58 E-value=1.5e-05 Score=84.44 Aligned_cols=162 Identities=12% Similarity=0.120 Sum_probs=117.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCC--CeEEE--EeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEE
Q 004885 553 ASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTES--FTVKS--TLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVW 624 (725)
Q Consensus 553 ~H~~~V~~i~fSpdg~~LaSgs~---Dg~V~IWdl~~--~~~i~--~l~~H~~~V~~IafsPd~~~Lasgs~-DgtIrvW 624 (725)
.+.+.++-++|+|+.++|.++-. +|.|-.|.++. ++... .......+-+.|++++++++|+++.. .+.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 44566889999999999888755 46777777664 44321 11222334488999999999999986 5799999
Q ss_pred ECCCCCee--eEEEecCCCC----------eEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEE----EecCCCeEEE
Q 004885 625 DTENPDYS--LRTFTGHSTT----------VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKCQSGATQM 688 (725)
Q Consensus 625 Dl~~~~~~--l~~~~~h~~~----------V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~----~~~~~~V~sv 688 (725)
-+...... +.....|.+. +....|.|+++++++..-.--+|.+|++..|..... ++...+...|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 98764312 2223345555 899999999996554443445799999997765432 2346778999
Q ss_pred EEecCCCEEEEEEc-CCeEEEEECCCC
Q 004885 689 RFQPRLGRILAAAI-ENYISILDVETQ 714 (725)
Q Consensus 689 ~fspdg~~Lla~s~-Dg~V~IwDl~tg 714 (725)
.|+|++++..+..+ +++|.||.....
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 99999998887777 899999998873
No 272
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.57 E-value=2e-05 Score=81.36 Aligned_cols=163 Identities=15% Similarity=0.154 Sum_probs=111.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc-------CCCCeEEEEEcCC------CCEEEEEeCCCeEEEE
Q 004885 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPS------LSRLATSSADRTVRVW 624 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~-------H~~~V~~IafsPd------~~~Lasgs~DgtIrvW 624 (725)
=+-++||||+.+||.+...|+|+|||+.... +..+.. -...|..+.|.+. ...|++...+|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 5679999999999999999999999987533 333321 2355677777552 2357777888888877
Q ss_pred ECCCC---C-eeeEEE--ec-CCCCeEEEEEccCCCeEEEEEeCCC----------cEEEEECCCCeeE-----------
Q 004885 625 DTENP---D-YSLRTF--TG-HSTTVMSLDFHPSKEDLLCSCDNNS----------EIRYWSINNGSCA----------- 676 (725)
Q Consensus 625 Dl~~~---~-~~l~~~--~~-h~~~V~sl~fsP~g~~llaSgs~Dg----------~I~IwDl~t~~~v----------- 676 (725)
-+..+ . .....| .. +...|.++.|+|..+.+++.|+... -+..|-+-++.+.
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~ 204 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDI 204 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccc
Confidence 75321 1 122222 22 3568999999999886666654322 2555654322110
Q ss_pred ----------E-----EEe----cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 677 ----------G-----VFK----CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 677 ----------~-----~~~----~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
+ .+. ....|..|..+|||..|++...+|.|.+|++-+-++...++
T Consensus 205 ~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 205 TASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred cccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 0 010 14568999999999999999999999999999887776654
No 273
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.55 E-value=1.5e-05 Score=84.59 Aligned_cols=207 Identities=14% Similarity=0.177 Sum_probs=129.7
Q ss_pred CccCCCCcEEEEeeCC-CcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeC-CC
Q 004885 500 NQLTDMDRFVDDGSLD-DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DK 577 (725)
Q Consensus 500 ~~~~~~~~~lasGs~D-~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~-Dg 577 (725)
..++...+|+.++... +.|.++-..++.........+.....+.. .+--+..+.+..|.|++++|++++- -.
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~------~rQ~~~h~H~a~~tP~~~~l~v~DLG~D 167 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPH------ERQESPHVHSANFTPDGRYLVVPDLGTD 167 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCC------ccccCCccceeeeCCCCCEEEEeecCCc
Confidence 3456667788777764 56777754443222111111111111100 0011222889999999999988753 23
Q ss_pred cEEEEECCCCeEEEEe---ccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCeeeEEEec---------CCCCeE
Q 004885 578 KAVLWCTESFTVKSTL---EEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTG---------HSTTVM 644 (725)
Q Consensus 578 ~V~IWdl~~~~~i~~l---~~H~~~V~~IafsPd~~~Lasgs~-DgtIrvWDl~~~~~~l~~~~~---------h~~~V~ 644 (725)
+|.+|+++.+.....- ..-...-..|.|||++++.++.+. +++|.+|..+.....+..+.. -.....
T Consensus 168 ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~a 247 (346)
T COG2706 168 RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAA 247 (346)
T ss_pred eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCcee
Confidence 6999999876543211 123456789999999999876654 999999999875322333221 124578
Q ss_pred EEEEccCCCeEEEEEeCCCcEEEEECCCC-eeEEEEec----CCCeEEEEEecCCCEEEEEEcC-CeEEEEECC
Q 004885 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKC----QSGATQMRFQPRLGRILAAAIE-NYISILDVE 712 (725)
Q Consensus 645 sl~fsP~g~~llaSgs~Dg~I~IwDl~t~-~~v~~~~~----~~~V~sv~fspdg~~Lla~s~D-g~V~IwDl~ 712 (725)
+|..+++|+.++++--....|.+|.+... ..+..+.. ........|++.+++|+++..+ ..|.||.+.
T Consensus 248 aIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 248 AIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred EEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 89999999976665555567888887642 22333222 2337889999999999999885 568888664
No 274
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.54 E-value=2e-07 Score=94.30 Aligned_cols=198 Identities=12% Similarity=0.170 Sum_probs=123.9
Q ss_pred EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004885 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 587 (725)
Q Consensus 508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~ 587 (725)
.++++..++.+.++ ...+....+.|+...+ ....+++.-|++.-.+-+.+-.++.++++..||.+.+++.+..
T Consensus 49 ~lf~~e~~~~~ss~-----g~~r~~~~~~~~rt~~--i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~ 121 (319)
T KOG4714|consen 49 ILFTGETSSQIISL-----GKGRGRCISLWERDDG--IDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKD 121 (319)
T ss_pred eeecccchhheeee-----ccceEEEechhhcccC--cCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHH
Confidence 55666666666665 2223333344433222 3344555566665555555557788999999999999998652
Q ss_pred eE-EEEeccCCCCeEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeC
Q 004885 588 TV-KSTLEEHTQWITDVRFSPSLSRLATSSA-----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (725)
Q Consensus 588 ~~-i~~l~~H~~~V~~IafsPd~~~Lasgs~-----DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~ 661 (725)
.. .+.+..-...-.+.++...++.|.++.. -+..+.|+++-.+..+.... ....|++++-+|....++++|+.
T Consensus 122 ~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~ 200 (319)
T KOG4714|consen 122 LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK-ALDAVTALCSHPAQQHLVCCGTD 200 (319)
T ss_pred HhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccc-ccccchhhhCCcccccEEEEecC
Confidence 11 1111111111122223333444444321 23456777765442222222 22349999999999999999999
Q ss_pred CCcEEEEECCCCeeEEEE-e-cCCCeEEEEEecCC-CEEEEEEcCCeEEEEECCC
Q 004885 662 NSEIRYWSINNGSCAGVF-K-CQSGATQMRFQPRL-GRILAAAIENYISILDVET 713 (725)
Q Consensus 662 Dg~I~IwDl~t~~~v~~~-~-~~~~V~sv~fspdg-~~Lla~s~Dg~V~IwDl~t 713 (725)
||.|.+||.++......+ + ++..+..|-|+|.. ..|++++.||.+.-||..+
T Consensus 201 dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 201 DGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred CCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 999999999987544333 2 36789999999964 5799999999999999875
No 275
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.53 E-value=2.2e-07 Score=113.03 Aligned_cols=166 Identities=16% Similarity=0.305 Sum_probs=136.0
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004885 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (725)
Q Consensus 550 ~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~-H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~ 628 (725)
.++.+-..|.++.-+|...+.+||+.||.|++|....+..+.+++. -...|+.+.|+.+|..+..+..||.+.+|.+.
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence 3455667788999999999999999999999999887777766642 23789999999999999999999999999998
Q ss_pred CCeeeEEEecCCCCeEEEEEccCCCeEEEEEe---CCCcEEEEECCC---CeeEEEEecCCCeEEEEEecCCCEEEEEEc
Q 004885 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINN---GSCAGVFKCQSGATQMRFQPRLGRILAAAI 702 (725)
Q Consensus 629 ~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs---~Dg~I~IwDl~t---~~~v~~~~~~~~V~sv~fspdg~~Lla~s~ 702 (725)
++ +......|.....+++|-.. ++++++ .++.+.+||..- ..++. .-|.++++++++.|....|++|+.
T Consensus 2282 pk-~~~s~qchnk~~~Df~Fi~s---~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2282 PK-PYTSWQCHNKALSDFRFIGS---LLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred Cc-ceeccccCCccccceeeeeh---hhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCC
Confidence 34 67888899999999999863 555554 567899999753 23444 345788999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEe
Q 004885 703 ENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 703 Dg~V~IwDl~tg~~v~~l~ 721 (725)
+|.|++||++-.+.+++|+
T Consensus 2357 ~G~v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred cCcEEEeehHHHHHHHHhh
Confidence 9999999999887777664
No 276
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.50 E-value=1.8e-06 Score=99.77 Aligned_cols=157 Identities=18% Similarity=0.214 Sum_probs=120.8
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC---------C
Q 004885 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---------D 618 (725)
Q Consensus 548 ~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~---------D 618 (725)
.+...-..+.|+-++. +++++++|...|+|.+-|.++.+.++++..|++.|.+++. .|+.|++|+. |
T Consensus 170 ~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D 245 (1118)
T KOG1275|consen 170 TRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMD 245 (1118)
T ss_pred eeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeeccccccccccc
Confidence 3333333444666666 6889999999999999999999999999999999998766 4889999986 6
Q ss_pred CeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEE---CCCCee-EEEE-ecCCCeEEEEEecC
Q 004885 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS---INNGSC-AGVF-KCQSGATQMRFQPR 693 (725)
Q Consensus 619 gtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwD---l~t~~~-v~~~-~~~~~V~sv~fspd 693 (725)
..|+|||++... .+.-+.-+.++ .-+.|+|.-...+|.++..|...+.| +.+... +..+ .....+..++++++
T Consensus 246 ~FvkVYDLRmmr-al~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn 323 (1118)
T KOG1275|consen 246 PFVKVYDLRMMR-ALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSN 323 (1118)
T ss_pred chhhhhhhhhhh-ccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCC
Confidence 678999999866 34444334343 56889998777788888889999999 333211 1112 22566999999999
Q ss_pred CCEEEEEEcCCeEEEEE
Q 004885 694 LGRILAAAIENYISILD 710 (725)
Q Consensus 694 g~~Lla~s~Dg~V~IwD 710 (725)
+..++.+..+|.|.+|.
T Consensus 324 ~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 324 GDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CceEEEecccCcEeeec
Confidence 99999999999999997
No 277
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=4.2e-07 Score=99.39 Aligned_cols=193 Identities=16% Similarity=0.170 Sum_probs=128.0
Q ss_pred CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004885 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (725)
Q Consensus 506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~ 585 (725)
++-+.+++.|++|++|....+.|++ .+-....++..|+.+|.++.|-.+-++++++ |+.|.+||.-
T Consensus 747 ENSFiSASkDKTVKLWSik~EgD~~------------~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPF 812 (1034)
T KOG4190|consen 747 ENSFISASKDKTVKLWSIKPEGDEI------------GTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPF 812 (1034)
T ss_pred ccceeeccCCceEEEEEeccccCcc------------ccceeeeEhhhccCcccceeeeeccceeeec--cCcceeeccc
Confidence 3456788999999999665554332 1223445678999999999999888888877 8899999976
Q ss_pred CCeEEEEec--cCCCCeEEEEEcCC--CCEE-EEEeCCCeEEEEECCCCCee--eEEE--ecCCCCeEEEEEccCCCeEE
Q 004885 586 SFTVKSTLE--EHTQWITDVRFSPS--LSRL-ATSSADRTVRVWDTENPDYS--LRTF--TGHSTTVMSLDFHPSKEDLL 656 (725)
Q Consensus 586 ~~~~i~~l~--~H~~~V~~IafsPd--~~~L-asgs~DgtIrvWDl~~~~~~--l~~~--~~h~~~V~sl~fsP~g~~ll 656 (725)
-++.+.... ...+.+..|..-++ ...+ +.|+...+|+++|.+..+.. ++.. .+....+.+++..+.|++ +
T Consensus 813 igr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~-l 891 (1034)
T KOG4190|consen 813 IGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNK-L 891 (1034)
T ss_pred ccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcch-h
Confidence 665544221 11233444444443 3333 44467899999999987632 2222 233466899999999984 5
Q ss_pred EEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEE-EECCCC
Q 004885 657 CSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISI-LDVETQ 714 (725)
Q Consensus 657 aSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~I-wDl~tg 714 (725)
+++-.+|+|.+.|.++|+.+..+.. ......++ .|....++....|.++.| |..-.|
T Consensus 892 Aa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 892 AAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred hHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCC
Confidence 5666789999999999999987764 33333333 233355555556666666 655444
No 278
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.47 E-value=9.9e-07 Score=92.38 Aligned_cols=159 Identities=14% Similarity=0.276 Sum_probs=115.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECC----CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC--
Q 004885 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-- 628 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~----~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~-- 628 (725)
..+++++.+.++...|++|-..|+|.-+.+. ....++.+..|...|..+-|+-...++++.+.|+.+..--.+.
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~ 147 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGN 147 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCC
Confidence 3567777777777777777777777777553 2334455567888888888887777888777775442211110
Q ss_pred --------------------------------------CCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEEC
Q 004885 629 --------------------------------------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670 (725)
Q Consensus 629 --------------------------------------~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl 670 (725)
.-..+.++.+|.+.+.+++|.+... ++++|..|..|.+||+
T Consensus 148 ~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdi 226 (404)
T KOG1409|consen 148 RLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDI 226 (404)
T ss_pred cccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc-EEEeccccCceEEEec
Confidence 0014567789999999999999866 7779999999999999
Q ss_pred CCC--eeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885 671 NNG--SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ 714 (725)
Q Consensus 671 ~t~--~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg 714 (725)
--. .....+.+...|..+...+.-..+++++.||.|.+||++..
T Consensus 227 gg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 227 GGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred cCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 643 33344445677888887777788999999999999998754
No 279
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.46 E-value=7.3e-07 Score=90.31 Aligned_cols=95 Identities=15% Similarity=0.339 Sum_probs=74.5
Q ss_pred cEEEEECCCCeEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEE
Q 004885 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656 (725)
Q Consensus 578 ~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd-~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~ll 656 (725)
..++|+++..+.+..-......|++++-+|. ...+++|+.||.+-+||.++...++..+..|+..++.|-|+|....-|
T Consensus 160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L 239 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL 239 (319)
T ss_pred ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence 4566666543322211112234999999995 567788889999999999998878888999999999999999877778
Q ss_pred EEEeCCCcEEEEECCC
Q 004885 657 CSCDNNSEIRYWSINN 672 (725)
Q Consensus 657 aSgs~Dg~I~IwDl~t 672 (725)
++|++||.+..||..+
T Consensus 240 ft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDAST 255 (319)
T ss_pred eEecCCCcEEEEcCCC
Confidence 8999999999999874
No 280
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.46 E-value=1.8e-07 Score=62.89 Aligned_cols=27 Identities=41% Similarity=0.685 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhhCChHHHHHHHHhcC
Q 004885 10 KMLDVYIYDYLLKRKLHASAKAFQTEG 36 (725)
Q Consensus 10 ~~L~~yiydyl~k~~~~~~A~~f~~e~ 36 (725)
+.||.+|||||+++|+.+||++|.+|+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 479999999999999999999999985
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.46 E-value=4.9e-05 Score=94.53 Aligned_cols=159 Identities=14% Similarity=0.124 Sum_probs=111.3
Q ss_pred CeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEeccC-----------------CCCeEEEEEcC-CCCEEEEEeC
Q 004885 557 KVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEH-----------------TQWITDVRFSP-SLSRLATSSA 617 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~-Dg~V~IWdl~~~~~i~~l~~H-----------------~~~V~~IafsP-d~~~Lasgs~ 617 (725)
.-..|+++++++.|+++.. .+.|+++|..++. +.++.+- -...++|+|+| ++..+++...
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 4578999998887666654 5689999987754 3333210 11346899999 4556667777
Q ss_pred CCeEEEEECCCCCeeeEEEecC---------------CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-
Q 004885 618 DRTVRVWDTENPDYSLRTFTGH---------------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC- 681 (725)
Q Consensus 618 DgtIrvWDl~~~~~~l~~~~~h---------------~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~- 681 (725)
++.|++||..++. +..+.+. -.....|+|+|++..++++-..++.|++||+.++........
T Consensus 704 ~~~I~v~d~~~g~--v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~ 781 (1057)
T PLN02919 704 QHQIWEYNISDGV--TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGD 781 (1057)
T ss_pred CCeEEEEECCCCe--EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecc
Confidence 8999999998765 2333221 123567999999988888888889999999987653221100
Q ss_pred ---------------------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE
Q 004885 682 ---------------------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL 718 (725)
Q Consensus 682 ---------------------~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~ 718 (725)
-.....|+|+++|..+++-..++.|++||..++.+..
T Consensus 782 ~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t 839 (1057)
T PLN02919 782 PTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT 839 (1057)
T ss_pred cccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE
Confidence 0124689999998877777778999999999887653
No 282
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.45 E-value=1e-05 Score=87.84 Aligned_cols=148 Identities=16% Similarity=0.167 Sum_probs=119.0
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004885 552 PASTSKVESCHFSPDGKLLATGGHDK-KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (725)
Q Consensus 552 ~~H~~~V~~i~fSpdg~~LaSgs~Dg-~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~ 630 (725)
-+|.+.|.-..+..+++-++.|..|| .|-|+|.++++.. .+...-+.|.++..+++|++++++.....|-+.|++++.
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 36778899999998888999999999 9999999887755 445567889999999999999999999999999999988
Q ss_pred eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC----cEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEc
Q 004885 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI 702 (725)
Q Consensus 631 ~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg----~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~ 702 (725)
....-....+-|+.++|||+++ ++|-+--+| .|+++|+.+++..........=.+-+|.||+++|..-+.
T Consensus 435 -v~~idkS~~~lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 435 -VRLIDKSEYGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred -eeEecccccceeEEEEEcCCce-eEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence 3333345567899999999988 555544344 699999999888776665555677889999998765543
No 283
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.9e-06 Score=91.90 Aligned_cols=169 Identities=16% Similarity=0.177 Sum_probs=124.0
Q ss_pred eeeeEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeE
Q 004885 544 TFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTV 621 (725)
Q Consensus 544 ~~~~~~~l~~H~~~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd-~~~Lasgs~DgtI 621 (725)
+++....+..|...|.+++|||..+ ++..++.+.+|+|.|+++..++..+..| ..+++++|+-| ..+|+.|...|.|
T Consensus 182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMV 260 (463)
T ss_pred CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceE
Confidence 3344557778889999999999777 7889999999999999999988888887 78999999986 4567888889999
Q ss_pred EEEECCCCCeeeEEEec---------------------------------------------------CCCCeEEEEEcc
Q 004885 622 RVWDTENPDYSLRTFTG---------------------------------------------------HSTTVMSLDFHP 650 (725)
Q Consensus 622 rvWDl~~~~~~l~~~~~---------------------------------------------------h~~~V~sl~fsP 650 (725)
.|||++.++..+..+.+ ..+.+.++.+++
T Consensus 261 lvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 261 LVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99999865421110000 011122222222
Q ss_pred ----------------------------------------------------------CCCeEEEEEeCCCcEEEEECCC
Q 004885 651 ----------------------------------------------------------SKEDLLCSCDNNSEIRYWSINN 672 (725)
Q Consensus 651 ----------------------------------------------------------~g~~llaSgs~Dg~I~IwDl~t 672 (725)
+...+++.++..+++.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 2244555666667889999999
Q ss_pred CeeEEEEecCCCeEEEEEe-cCCCEEEEEEcCCeEEEEECCC
Q 004885 673 GSCAGVFKCQSGATQMRFQ-PRLGRILAAAIENYISILDVET 713 (725)
Q Consensus 673 ~~~v~~~~~~~~V~sv~fs-pdg~~Lla~s~Dg~V~IwDl~t 713 (725)
++.+.++....+|..++.. -++..+++.-.|..++||..++
T Consensus 421 ~evvQ~l~~~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~es 462 (463)
T KOG1645|consen 421 FEVVQTLALSEPVLDICPNDTNGSSYLALLTDDRVHIYKNES 462 (463)
T ss_pred hheeeecccCcceeecceeecCCcchhhheecceEEEEecCC
Confidence 9999999888889888854 3455666777788999997654
No 284
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.44 E-value=0.00022 Score=73.99 Aligned_cols=158 Identities=15% Similarity=0.122 Sum_probs=107.1
Q ss_pred eEEEEEc-CCCCEEEEEeCCCcEEEEECCCCeEEEEecc-----CCCCeEEEEEcCCCCEEEEEeCC--------CeEEE
Q 004885 558 VESCHFS-PDGKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPSLSRLATSSAD--------RTVRV 623 (725)
Q Consensus 558 V~~i~fS-pdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~-----H~~~V~~IafsPd~~~Lasgs~D--------gtIrv 623 (725)
...+++. +++ .|+.+..++ +.++|..+++....+.. .....+++++.|+|++.++.... +.|..
T Consensus 42 ~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 6677777 565 455555544 56669888765444332 34668899999999987776653 45666
Q ss_pred EECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee----EEEE-ec--C-CCeEEEEEecCCC
Q 004885 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVF-KC--Q-SGATQMRFQPRLG 695 (725)
Q Consensus 624 WDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~----v~~~-~~--~-~~V~sv~fspdg~ 695 (725)
++.. +. +......-.....|+|+|+++.++++-+..+.|..|++..... ...+ .. . +..-.++++.+|.
T Consensus 120 ~~~~-~~--~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~ 196 (246)
T PF08450_consen 120 IDPD-GK--VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN 196 (246)
T ss_dssp EETT-SE--EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-
T ss_pred ECCC-Ce--EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC
Confidence 6766 33 3333333456789999999998888888889999999863221 1222 21 2 2377899999988
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 696 RILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 696 ~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
.+++....+.|.++|.+ |+.+..+.
T Consensus 197 l~va~~~~~~I~~~~p~-G~~~~~i~ 221 (246)
T PF08450_consen 197 LWVADWGGGRIVVFDPD-GKLLREIE 221 (246)
T ss_dssp EEEEEETTTEEEEEETT-SCEEEEEE
T ss_pred EEEEEcCCCEEEEECCC-ccEEEEEc
Confidence 77777778999999988 88777665
No 285
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.44 E-value=3.9e-05 Score=83.44 Aligned_cols=148 Identities=14% Similarity=0.130 Sum_probs=119.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC-eEEEEECCCCCeeeEEEecCCCCeE
Q 004885 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-TVRVWDTENPDYSLRTFTGHSTTVM 644 (725)
Q Consensus 566 dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dg-tIrvWDl~~~~~~l~~~~~h~~~V~ 644 (725)
+|.+++..|. |.+.|.+...+..+. .+|...|.-..+..+.+-++.|..|| .+-|+|.++++ +..+.+.-+.|.
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e--~kr~e~~lg~I~ 405 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE--VKRIEKDLGNIE 405 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce--EEEeeCCccceE
Confidence 7889999885 678888876665543 35677899999988888899999999 89999999876 677777778999
Q ss_pred EEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCC----eEEEEECCCCeEEEE
Q 004885 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIEN----YISILDVETQVCRLK 719 (725)
Q Consensus 645 sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg----~V~IwDl~tg~~v~~ 719 (725)
++..+++|+. ++.+.....|.++|++++.....-+. .+-|+.+.|+|++++++-+--+| .|++||+.+++....
T Consensus 406 av~vs~dGK~-~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v 484 (668)
T COG4946 406 AVKVSPDGKK-VVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV 484 (668)
T ss_pred EEEEcCCCcE-EEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe
Confidence 9999999984 45666678899999999876554443 45699999999999988875554 699999999876643
No 286
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.44 E-value=5.9e-07 Score=94.03 Aligned_cols=158 Identities=16% Similarity=0.249 Sum_probs=116.3
Q ss_pred EEEEcCC--CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC----Ceee
Q 004885 560 SCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP----DYSL 633 (725)
Q Consensus 560 ~i~fSpd--g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~----~~~l 633 (725)
.|+|+-+ +-. ++.+.+-.|-+-|++++-.- .|. ..+.|.++.|+-.+.+++.|+..|.|.++|++.. ..+.
T Consensus 216 ~CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 216 SCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred hhhhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence 3466642 223 55566778888898875432 232 4677889999988999999999999999999876 3344
Q ss_pred EEEecCCCCeEEEEEcc-CCCeEEEEEeCCCcEEEEECCCCee---EEEEecC---CCeEEEEEecCCCEEEEEEcCCeE
Q 004885 634 RTFTGHSTTVMSLDFHP-SKEDLLCSCDNNSEIRYWSINNGSC---AGVFKCQ---SGATQMRFQPRLGRILAAAIENYI 706 (725)
Q Consensus 634 ~~~~~h~~~V~sl~fsP-~g~~llaSgs~Dg~I~IwDl~t~~~---v~~~~~~---~~V~sv~fspdg~~Lla~s~Dg~V 706 (725)
..+ -|.+.|+++..-. ++.++ .+.+.+|.|++||++--+| +..++++ ..-.-+.+.+..+.+++++.|...
T Consensus 293 ~rl-yh~Ssvtslq~Lq~s~q~L-maS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcyt 370 (425)
T KOG2695|consen 293 QRL-YHDSSVTSLQILQFSQQKL-MASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYT 370 (425)
T ss_pred EEE-EcCcchhhhhhhccccceE-eeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEE
Confidence 444 4888899988766 55544 4666799999999998777 7777642 112234456777889999999999
Q ss_pred EEEECCCCeEEEEEeC
Q 004885 707 SILDVETQVCRLKLQV 722 (725)
Q Consensus 707 ~IwDl~tg~~v~~l~G 722 (725)
+||.++.|..+.+++-
T Consensus 371 RiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 371 RIWSLDSGHLLCTIPF 386 (425)
T ss_pred EEEecccCceeeccCC
Confidence 9999999998887753
No 287
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=7.7e-06 Score=93.85 Aligned_cols=174 Identities=10% Similarity=0.122 Sum_probs=121.6
Q ss_pred CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (725)
Q Consensus 505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl 584 (725)
++++++-|+.+|.|.++..... . .+...|+.. ..+|.++++|+.||+|.|-.+
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~~~--------------------~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl 100 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQGN--------------------P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSL 100 (846)
T ss_pred hcceeeeccccceEEEEecCCc--------------------c-ccccccccc------ccCCceEEEecCCCcEEEeec
Confidence 4568999999999998832111 1 111223222 458999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCC-----CCEEEEEeCCCeEEEEECCCCCe-eeEEEecCCCCeEEEEEccCCCeEEEE
Q 004885 585 ESFTVKSTLEEHTQWITDVRFSPS-----LSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (725)
Q Consensus 585 ~~~~~i~~l~~H~~~V~~IafsPd-----~~~Lasgs~DgtIrvWDl~~~~~-~l~~~~~h~~~V~sl~fsP~g~~llaS 658 (725)
.+.....++. ...++.+|+++|+ .+.+++|+.-| +.++.-+--.. .......-.++|.+++|.-+ +++-
T Consensus 101 ~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~---lIAW 175 (846)
T KOG2066|consen 101 FTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN---LIAW 175 (846)
T ss_pred cCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc---EEEE
Confidence 8877766665 3568999999997 56799998888 76665332111 11134555689999999743 7767
Q ss_pred EeCCCcEEEEECCCCeeEEEEecC-------CCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004885 659 CDNNSEIRYWSINNGSCAGVFKCQ-------SGATQMRFQPRLGRILAAAIENYISILDVET 713 (725)
Q Consensus 659 gs~Dg~I~IwDl~t~~~v~~~~~~-------~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~t 713 (725)
++++ .|+|||+.++..+..++.. .-...+.|.++. . ++.|...+|+|..++.
T Consensus 176 and~-Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~-LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 176 ANDD-GVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-R-LVIGWGDSVKICSIKK 234 (846)
T ss_pred ecCC-CcEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-e-EEEecCCeEEEEEEec
Confidence 7655 4999999998888777641 124667888873 3 3456777899988873
No 288
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.33 E-value=8.5e-07 Score=92.90 Aligned_cols=136 Identities=17% Similarity=0.266 Sum_probs=106.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----eEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECC
Q 004885 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-----TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTE 627 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~-----~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~ 627 (725)
.++.|.++.|...+++++.|+..|.|.++|++.. .+...+ -|...|+++..-- ++.+|++.+.+|+|++||++
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence 3567999999988999999999999999999764 334344 4889999998766 78899999999999999998
Q ss_pred CCCee---eEEEecCCCCeEEEEEc--cCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-----CCeEEEEEec
Q 004885 628 NPDYS---LRTFTGHSTTVMSLDFH--PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-----SGATQMRFQP 692 (725)
Q Consensus 628 ~~~~~---l~~~~~h~~~V~sl~fs--P~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~-----~~V~sv~fsp 692 (725)
--+ + +..+.||...-.-+-++ +... ++++++.|-..|||.++.+..+.+++.. ..+.+++|..
T Consensus 330 ~~K-~~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 330 ATK-CKKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred hhh-cccceeeeecccccccccccccccccc-eEEEccCeeEEEEEecccCceeeccCCCCccccccccceehhc
Confidence 765 5 88888886554444333 4444 6667888999999999999999888752 2456666653
No 289
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.32 E-value=4.9e-05 Score=77.63 Aligned_cols=155 Identities=13% Similarity=0.045 Sum_probs=111.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE
Q 004885 558 VESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~--~~i~-~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~ 634 (725)
+..+++++|++++++.+....|..|.++.. ..+. .....+..=.+..|+.....+|++..||++.|||++....+..
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 789999999999999999999999988652 2333 2223344456788999999999999999999999998663332
Q ss_pred EE----ecCCCCeEEEEEccCCCe-EEEEEeCCCcEEEEECCCCeeEEEEec---------CCCeEEEEEecCCCEEEEE
Q 004885 635 TF----TGHSTTVMSLDFHPSKED-LLCSCDNNSEIRYWSINNGSCAGVFKC---------QSGATQMRFQPRLGRILAA 700 (725)
Q Consensus 635 ~~----~~h~~~V~sl~fsP~g~~-llaSgs~Dg~I~IwDl~t~~~v~~~~~---------~~~V~sv~fspdg~~Lla~ 700 (725)
.. ..|.+.+..+.|++.|.. +|+..-.-+.+.+.|++++.-...+.. ...|...+|+.++..+.+.
T Consensus 241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~ 320 (344)
T KOG4532|consen 241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVK 320 (344)
T ss_pred hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccc
Confidence 22 348899999999986542 444444567899999999865544432 2347777888887776665
Q ss_pred EcCCeEEEEECCC
Q 004885 701 AIENYISILDVET 713 (725)
Q Consensus 701 s~Dg~V~IwDl~t 713 (725)
..+ .+.-|++.+
T Consensus 321 ~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 321 NEL-QGAEYNILS 332 (344)
T ss_pred cch-hhheeeccc
Confidence 543 345555543
No 290
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.31 E-value=2.5e-06 Score=96.44 Aligned_cols=209 Identities=12% Similarity=0.155 Sum_probs=138.6
Q ss_pred ccccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEec
Q 004885 473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP 552 (725)
Q Consensus 473 ~l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 552 (725)
.+.|.+++.++.+-|++... .++++++.|..|..|+..... ..+....
T Consensus 108 f~lhghsraitd~n~~~q~p--------------dVlatcsvdt~vh~wd~rSp~------------------~p~ys~~ 155 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHP--------------DVLATCSVDTYVHAWDMRSPH------------------RPFYSTS 155 (1081)
T ss_pred EEEecCccceeccccCCCCC--------------cceeeccccccceeeeccCCC------------------cceeeee
Confidence 45566666666666666433 478999999999999554331 1222222
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCC
Q 004885 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD 630 (725)
Q Consensus 553 ~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~-~~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~ 630 (725)
.-.....-++|+-....+.+.+..+.|+|||++. +.++..+++|...|+.++|.. ....+.+++.|++|+.||.++..
T Consensus 156 ~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 156 SWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred cccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence 3334467789987555566666788899999976 567888999999999999976 35678899999999999998765
Q ss_pred eeeEEEecCCCCeEEEEEccCCCeEEEEEeC-CCcEEEEECCC----------CeeEEEEecCC-CeEEEEEe-------
Q 004885 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINN----------GSCAGVFKCQS-GATQMRFQ------- 691 (725)
Q Consensus 631 ~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~-Dg~I~IwDl~t----------~~~v~~~~~~~-~V~sv~fs------- 691 (725)
...........+|+.-+|-|-|+-+++--.. +..|.+++.++ ...++.|.++. .|....|-
T Consensus 236 ~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~ 315 (1081)
T KOG0309|consen 236 TESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDG 315 (1081)
T ss_pred cccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccC
Confidence 3333344455678888888876643322221 22344443332 35677777643 34444332
Q ss_pred -cCC--CEEEEEEcCCeEEEEECCC
Q 004885 692 -PRL--GRILAAAIENYISILDVET 713 (725)
Q Consensus 692 -pdg--~~Lla~s~Dg~V~IwDl~t 713 (725)
.|. -.|++-+.|.++++|-+.+
T Consensus 316 d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 316 DYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CCCccceeEEEeecCCceEeeeccH
Confidence 221 2588889999999998764
No 291
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.31 E-value=2.1e-06 Score=62.42 Aligned_cols=38 Identities=29% Similarity=0.543 Sum_probs=36.1
Q ss_pred eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004885 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (725)
Q Consensus 546 ~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWd 583 (725)
+.+..+++|.+.|++|+|+|++.+|++|+.|++|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788999999999999999999999999999999997
No 292
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.30 E-value=7e-06 Score=84.97 Aligned_cols=158 Identities=18% Similarity=0.287 Sum_probs=111.2
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC---eEEEEeccC-----CCCeEEEEEcCC-CCEEEEEeCCCeEE
Q 004885 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEH-----TQWITDVRFSPS-LSRLATSSADRTVR 622 (725)
Q Consensus 552 ~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~---~~i~~l~~H-----~~~V~~IafsPd-~~~Lasgs~DgtIr 622 (725)
.+|.-.|.+|.|+.|...++++ .|-.|.+|+++-. -.+..++.| ...|++..|+|. ...+.-++..|+|+
T Consensus 169 NaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred ccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 5789999999999988888887 4778999998631 223334444 356889999995 45666677799999
Q ss_pred EEECCCCCeee---------------EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC-CeeEEEEec-----
Q 004885 623 VWDTENPDYSL---------------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKC----- 681 (725)
Q Consensus 623 vWDl~~~~~~l---------------~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t-~~~v~~~~~----- 681 (725)
+-|++....|. ..|.+-...|..+.|+++|++++ +-+ --+|+|||++. ..++.++..
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIl-sRd-yltvkiwDvnm~k~pikTi~~h~~l~ 325 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYIL-SRD-YLTVKIWDVNMAKNPIKTIPMHCDLM 325 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEE-Eec-cceEEEEecccccCCceeechHHHHH
Confidence 99998433221 11223346789999999998544 444 46899999986 456666632
Q ss_pred --------CCCe---EEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885 682 --------QSGA---TQMRFQPRLGRILAAAIENYISILDVE 712 (725)
Q Consensus 682 --------~~~V---~sv~fspdg~~Lla~s~Dg~V~IwDl~ 712 (725)
...| ..+.|+.|...+++|+..+..-||-..
T Consensus 326 ~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 326 DELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred HHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 1222 457788888899999887777777643
No 293
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.27 E-value=0.00038 Score=76.08 Aligned_cols=172 Identities=14% Similarity=0.149 Sum_probs=111.0
Q ss_pred eeeEEEecCCCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCeEEEEeccC-------CCCeEEEEEcC
Q 004885 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSP 607 (725)
Q Consensus 545 ~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~----------Dg~V~IWdl~~~~~i~~l~~H-------~~~V~~IafsP 607 (725)
.+.+.++..-..+-. + +|||++.|++|.. +..|.|||+.+.+.+..+.-- ......++++|
T Consensus 37 ~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~ 114 (352)
T TIGR02658 37 GRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP 114 (352)
T ss_pred CEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC
Confidence 344444443322222 4 9999998876655 789999999999998877631 22334789999
Q ss_pred CCCEEEEEeC--CCeEEEEECCCCCeeeEEEe---------------------cCC----------CCeEEE--------
Q 004885 608 SLSRLATSSA--DRTVRVWDTENPDYSLRTFT---------------------GHS----------TTVMSL-------- 646 (725)
Q Consensus 608 d~~~Lasgs~--DgtIrvWDl~~~~~~l~~~~---------------------~h~----------~~V~sl-------- 646 (725)
|+++|++... +..|.+.|+.+++. +..+. +.. ..+...
T Consensus 115 dgk~l~V~n~~p~~~V~VvD~~~~kv-v~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~ 193 (352)
T TIGR02658 115 DNKTLLFYQFSPSPAVGVVDLEGKAF-VRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDE 193 (352)
T ss_pred CCCEEEEecCCCCCEEEEEECCCCcE-EEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCcc
Confidence 9999998763 68899999987652 11110 000 001111
Q ss_pred ------EEcc-CCCeEEEEEeCCCcEEEEECCCC-----eeEEEEec--------CCCeEEEEEecCCCEEEEEEc----
Q 004885 647 ------DFHP-SKEDLLCSCDNNSEIRYWSINNG-----SCAGVFKC--------QSGATQMRFQPRLGRILAAAI---- 702 (725)
Q Consensus 647 ------~fsP-~g~~llaSgs~Dg~I~IwDl~t~-----~~v~~~~~--------~~~V~sv~fspdg~~Lla~s~---- 702 (725)
.|.+ +|..++++.. |.|++.|+... ..+..+.. .+++.-++++++++++++...
T Consensus 194 ~v~~rP~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~ 271 (352)
T TIGR02658 194 YLINHPAYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAK 271 (352)
T ss_pred ccccCCceEcCCCcEEEEecC--CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCcc
Confidence 1233 6665665543 99999996432 22222211 233455999999999888531
Q ss_pred ------CCeEEEEECCCCeEEEEEe
Q 004885 703 ------ENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 703 ------Dg~V~IwDl~tg~~v~~l~ 721 (725)
.+.|.++|+++++.+.++.
T Consensus 272 ~thk~~~~~V~ViD~~t~kvi~~i~ 296 (352)
T TIGR02658 272 WTHKTASRFLFVVDAKTGKRLRKIE 296 (352)
T ss_pred ccccCCCCEEEEEECCCCeEEEEEe
Confidence 2689999999999999886
No 294
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.27 E-value=2.5e-06 Score=62.07 Aligned_cols=39 Identities=36% Similarity=0.548 Sum_probs=36.9
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004885 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (725)
Q Consensus 587 ~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWD 625 (725)
++++.++.+|...|++|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
No 295
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.25 E-value=4.3e-07 Score=103.98 Aligned_cols=167 Identities=17% Similarity=0.192 Sum_probs=121.8
Q ss_pred eeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC--eE
Q 004885 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TV 621 (725)
Q Consensus 544 ~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dg--tI 621 (725)
.++..+.++.|+...+|++|+-+.++|++|+..|.|++|++.+|.......+|..+|+-|.-+.+|..+++.+.-. -.
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 4567778889999999999999999999999999999999999999999999999999999988998877765433 46
Q ss_pred EEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-----CCCeEEEEEecCCCE
Q 004885 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQPRLGR 696 (725)
Q Consensus 622 rvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-----~~~V~sv~fspdg~~ 696 (725)
.+|++.......+.|. .-.++.|+.....- +.|.....+.|||+.++..+.++-. ...-..+.|+|+...
T Consensus 1170 aLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r-~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD----EDKAVKFSNSLQFR-ALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HHhccccccCcccccc----ccceeehhhhHHHH-HhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 7999987554566665 34678887653322 2333335688999999877665321 122356678887555
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEE
Q 004885 697 ILAAAIENYISILDVETQVCRLKL 720 (725)
Q Consensus 697 Lla~s~Dg~V~IwDl~tg~~v~~l 720 (725)
++- || .+||++..+.|+.|
T Consensus 1245 Iln---dG--vLWDvR~~~aIh~F 1263 (1516)
T KOG1832|consen 1245 ILN---DG--VLWDVRIPEAIHRF 1263 (1516)
T ss_pred Eee---Cc--eeeeeccHHHHhhh
Confidence 432 33 35666655544443
No 296
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.20 E-value=0.00032 Score=71.76 Aligned_cols=148 Identities=11% Similarity=0.054 Sum_probs=96.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEe-ccCC---CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCC
Q 004885 566 DGKLLATGGHDKKAVLWCTESFTVKSTL-EEHT---QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 641 (725)
Q Consensus 566 dg~~LaSgs~Dg~V~IWdl~~~~~i~~l-~~H~---~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~ 641 (725)
++..+++++.|+.|+.+|..+++.+... .... ...........+..++.+..++.|..+|++++. .+-.+.....
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~-~~w~~~~~~~ 153 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGK-LLWKYPVGEP 153 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTE-EEEEEESSTT
T ss_pred cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCc-EEEEeecCCC
Confidence 4556777778889999999999998874 3221 112222233347888999889999999999988 4554444332
Q ss_pred C----------e-EEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004885 642 T----------V-MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD 710 (725)
Q Consensus 642 ~----------V-~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwD 710 (725)
. + ..+.+. ++ .++ .++.++.+..+|+.+++.+.... ...+..+ ...++..|++++.++.|.+||
T Consensus 154 ~~~~~~~~~~~~~~~~~~~-~~-~v~-~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~~-~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVIS-DG-RVY-VSSGDGRVVAVDLATGEKLWSKP-ISGIYSL-PSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp -SS--EEEETTEEEEEECC-TT-EEE-EECCTSSEEEEETTTTEEEEEEC-SS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred CCCcceeeecccccceEEE-CC-EEE-EEcCCCeEEEEECCCCCEEEEec-CCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence 2 1 222222 33 344 55556654444999999775333 2333332 456678888888999999999
Q ss_pred CCCCeEEEE
Q 004885 711 VETQVCRLK 719 (725)
Q Consensus 711 l~tg~~v~~ 719 (725)
+++|+.+-.
T Consensus 229 ~~tG~~~W~ 237 (238)
T PF13360_consen 229 LKTGKVVWQ 237 (238)
T ss_dssp TTTTEEEEE
T ss_pred CCCCCEEeE
Confidence 999998743
No 297
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.20 E-value=5.3e-06 Score=93.50 Aligned_cols=158 Identities=15% Similarity=0.197 Sum_probs=120.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---------------EEEEeccCCCCeEEEEEcCCCCEEEEEeCC
Q 004885 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---------------VKSTLEEHTQWITDVRFSPSLSRLATSSAD 618 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~---------------~i~~l~~H~~~V~~IafsPd~~~Lasgs~D 618 (725)
......|+.|+....+||+|+.||.++|..+.+.. .-.++++|...|..+.|..+...|-|+..+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 34568999999999999999999999999775421 124578999999999999999999999999
Q ss_pred CeEEEEECCCCCeeeEEEe-cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCE
Q 004885 619 RTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGR 696 (725)
Q Consensus 619 gtIrvWDl~~~~~~l~~~~-~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~ 696 (725)
|.|.||-+-++..+...+. ...+.|.+++|..+|..+ |..-.||.|.|=.++. ..+.--+. ......+.|++|.+.
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kI-cIvYeDGavIVGsvdG-NRIwgKeLkg~~l~hv~ws~D~~~ 170 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKI-CIVYEDGAVIVGSVDG-NRIWGKELKGQLLAHVLWSEDLEQ 170 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEE-EEEEccCCEEEEeecc-ceecchhcchheccceeecccHHH
Confidence 9999999988764333332 234678999999999854 5666688887766653 33321111 223567889999888
Q ss_pred EEEEEcCCeEEEEECCC
Q 004885 697 ILAAAIENYISILDVET 713 (725)
Q Consensus 697 Lla~s~Dg~V~IwDl~t 713 (725)
++.+-..|.+.+||...
T Consensus 171 ~Lf~~ange~hlydnqg 187 (1189)
T KOG2041|consen 171 ALFKKANGETHLYDNQG 187 (1189)
T ss_pred HHhhhcCCcEEEecccc
Confidence 88888889999999754
No 298
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.19 E-value=0.00011 Score=80.86 Aligned_cols=162 Identities=19% Similarity=0.221 Sum_probs=107.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCc---------------EEEEECCCCeEEEEecc-------------------------
Q 004885 556 SKVESCHFSPDGKLLATGGHDKK---------------AVLWCTESFTVKSTLEE------------------------- 595 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~---------------V~IWdl~~~~~i~~l~~------------------------- 595 (725)
..|..+.|||.+++|.+-++... +.|||+.++..+..+..
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~ 151 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG 151 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc
Confidence 34888999999999988665444 88999877655433211
Q ss_pred -----C---------------CCCeEEEEEcCC--CCEEEE-----EeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEE
Q 004885 596 -----H---------------TQWITDVRFSPS--LSRLAT-----SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648 (725)
Q Consensus 596 -----H---------------~~~V~~IafsPd--~~~Las-----gs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~f 648 (725)
| ...|....|+|. +..|+. .+.++++++|.+.... .+.+-.-....-..+.|
T Consensus 152 ~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s-~l~tk~lfk~~~~qLkW 230 (561)
T COG5354 152 SSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS-VLVTKNLFKVSGVQLKW 230 (561)
T ss_pred CeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC-eeeeeeeEeecccEEEE
Confidence 1 134667778884 334443 3456788888887554 33322212223356889
Q ss_pred ccCCCeEEEEEeC----------CCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEE--cCCeEEEEECCCCeE
Q 004885 649 HPSKEDLLCSCDN----------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--IENYISILDVETQVC 716 (725)
Q Consensus 649 sP~g~~llaSgs~----------Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s--~Dg~V~IwDl~tg~~ 716 (725)
.+.|++++|-... ...++|+++....+.......++|..++|.|.+..+++++ .+..+.++|++.. +
T Consensus 231 ~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l 309 (561)
T COG5354 231 QVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-L 309 (561)
T ss_pred ecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-e
Confidence 9999987764432 2468889988655555544478999999999988776665 4788999999866 4
Q ss_pred EEE
Q 004885 717 RLK 719 (725)
Q Consensus 717 v~~ 719 (725)
++.
T Consensus 310 ~~~ 312 (561)
T COG5354 310 RFY 312 (561)
T ss_pred EEe
Confidence 433
No 299
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.19 E-value=4.9e-05 Score=86.82 Aligned_cols=180 Identities=16% Similarity=0.224 Sum_probs=128.2
Q ss_pred CCceeeeEEEecCCCCCeEEEEEcCC------------CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcC-
Q 004885 541 KGFTFTEFQLIPASTSKVESCHFSPD------------GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP- 607 (725)
Q Consensus 541 ~~~~~~~~~~l~~H~~~V~~i~fSpd------------g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsP- 607 (725)
+..++..+..++-|...|+.+.|.|- .-+||++...|.|.+||+..+..+..+..|..+|-+++|-+
T Consensus 41 Ds~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~ 120 (1062)
T KOG1912|consen 41 DSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPA 120 (1062)
T ss_pred ehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeec
Confidence 45566778888999999999999872 12578888899999999999888888999999999999977
Q ss_pred --CC-CEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC----CeeEEEEe
Q 004885 608 --SL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFK 680 (725)
Q Consensus 608 --d~-~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t----~~~v~~~~ 680 (725)
+. ..|+......+|.+|+..+++ .+-.+........|+.++|-...-|+.-+..|.|.+.+.-. ......+.
T Consensus 121 rd~Srd~LlaIh~ss~lvLwntdtG~-k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~q 199 (1062)
T KOG1912|consen 121 RDDSRDVLLAIHGSSTLVLWNTDTGE-KFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQ 199 (1062)
T ss_pred cCcchheeEEecCCcEEEEEEccCCc-eeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEE
Confidence 33 467777778899999999988 34444444456777888886544455555567776665431 11111111
Q ss_pred ----cCC-------------------------CeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 681 ----CQS-------------------------GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 681 ----~~~-------------------------~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
+.. -...++|+|.-+.++....-..+.|+|++-..|+..+.
T Consensus 200 I~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvp 269 (1062)
T KOG1912|consen 200 ITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVP 269 (1062)
T ss_pred EecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEE
Confidence 000 02335778887777888888889999998777766553
No 300
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.16 E-value=0.00022 Score=75.71 Aligned_cols=157 Identities=12% Similarity=0.128 Sum_probs=111.8
Q ss_pred EEEcCCCCEEEEEeC-----CCcEEEEECC-CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-----------------
Q 004885 561 CHFSPDGKLLATGGH-----DKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------------- 617 (725)
Q Consensus 561 i~fSpdg~~LaSgs~-----Dg~V~IWdl~-~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~----------------- 617 (725)
-+||+||++|++.-. .|.|-|||+. +...+..+..|.-.-..|.+.||++.|+++..
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 579999999998643 4799999998 67888899888877888999999988877632
Q ss_pred -CCeEEEEECCCCCeeeEE--E--ecCCCCeEEEEEccCCCeEEEEEeCCCc-------EEEEECCCCeeEEEEec----
Q 004885 618 -DRTVRVWDTENPDYSLRT--F--TGHSTTVMSLDFHPSKEDLLCSCDNNSE-------IRYWSINNGSCAGVFKC---- 681 (725)
Q Consensus 618 -DgtIrvWDl~~~~~~l~~--~--~~h~~~V~sl~fsP~g~~llaSgs~Dg~-------I~IwDl~t~~~v~~~~~---- 681 (725)
+..+.+.|..++. .+.. + .-|.-.|..+++.++|. +++.+-..|. |-+++. +..+..+..
T Consensus 136 M~psL~~ld~~sG~-ll~q~~Lp~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~ 211 (305)
T PF07433_consen 136 MQPSLVYLDARSGA-LLEQVELPPDLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQ 211 (305)
T ss_pred cCCceEEEecCCCc-eeeeeecCccccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHH
Confidence 2234555666665 3333 3 23667899999999987 4445443332 333433 333333321
Q ss_pred ----CCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEe
Q 004885 682 ----QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 682 ----~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~tg~~v~~l~ 721 (725)
...+-+|+++.++..+++++- .+.+.+||..+++++....
T Consensus 212 ~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 212 WRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP 256 (305)
T ss_pred HHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc
Confidence 466999999999888766655 6899999999999887654
No 301
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.14 E-value=2.5e-05 Score=89.19 Aligned_cols=151 Identities=17% Similarity=0.282 Sum_probs=120.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCC------------CEEEEEeCCCeEEEEE
Q 004885 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL------------SRLATSSADRTVRVWD 625 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~------------~~Lasgs~DgtIrvWD 625 (725)
-.++.|+|.| +||.|+. ..|.|.|..+.+.+..++-|...|+.|.|.|.. -+|+++...|.|.+||
T Consensus 18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 5678899766 6787775 478999999999999999999999999998721 2467777889999999
Q ss_pred CCCCCeeeEEEecCCCCeEEEEEccC---CCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecC-CCEEEEE
Q 004885 626 TENPDYSLRTFTGHSTTVMSLDFHPS---KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPR-LGRILAA 700 (725)
Q Consensus 626 l~~~~~~l~~~~~h~~~V~sl~fsP~---g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspd-g~~Lla~ 700 (725)
..... .+..+..|..+|-.++|-+. .++++++-....+|.+|+..+|..+..+.. +....++.++|- .+++.+-
T Consensus 96 ~~~~s-~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l 174 (1062)
T KOG1912|consen 96 FVLAS-VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVL 174 (1062)
T ss_pred ehhhh-hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEE
Confidence 99877 57778888899999998763 446777777778999999999999988887 444566888874 3567677
Q ss_pred EcCCeEEEEEC
Q 004885 701 AIENYISILDV 711 (725)
Q Consensus 701 s~Dg~V~IwDl 711 (725)
+..|.|.+.+.
T Consensus 175 ~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 175 GSKGFVLSCKD 185 (1062)
T ss_pred ccCceEEEEec
Confidence 77888777765
No 302
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.14 E-value=0.00066 Score=70.45 Aligned_cols=143 Identities=15% Similarity=0.167 Sum_probs=99.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEE
Q 004885 555 TSKVESCHFSPDGKLLATGGHD--------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWD 625 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~D--------g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~La-sgs~DgtIrvWD 625 (725)
....+++++.++|++.++.... +.|..++.. ++...... .-...+.|+|+|+++.|+ +-+..+.|..++
T Consensus 85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~ 162 (246)
T PF08450_consen 85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFD 162 (246)
T ss_dssp TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEE
T ss_pred cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEe
Confidence 4557899999999987776644 557777776 55443333 356678999999998776 456678899999
Q ss_pred CCCCCe---eeEEE---ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-CCeEEEEEe-cCCCEE
Q 004885 626 TENPDY---SLRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQ-PRLGRI 697 (725)
Q Consensus 626 l~~~~~---~l~~~---~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~-~~V~sv~fs-pdg~~L 697 (725)
+..... ..+.+ ....+..-.++++.+|+ ++++.-..+.|.++|.+ |+.+..+... ..+++++|. ++.+.|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L 240 (246)
T PF08450_consen 163 LDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTL 240 (246)
T ss_dssp EETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEE
T ss_pred ccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEE
Confidence 875432 11222 22223478899999987 66676678899999988 8888888764 689999994 666776
Q ss_pred EEEE
Q 004885 698 LAAA 701 (725)
Q Consensus 698 la~s 701 (725)
++.+
T Consensus 241 ~vTt 244 (246)
T PF08450_consen 241 YVTT 244 (246)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6654
No 303
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.13 E-value=0.00023 Score=78.77 Aligned_cols=149 Identities=14% Similarity=0.024 Sum_probs=98.3
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeccCCC-------CeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCeeeEEEec
Q 004885 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-------WITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTFTG 638 (725)
Q Consensus 568 ~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~-------~V~~IafsP--d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~ 638 (725)
..++.+..++.|..+|..+++.+........ .+..+.-+| .+..+++++.++.+..||..+++ .+-...
T Consensus 191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~-~~W~~~- 268 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR-VLWKRD- 268 (377)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc-EEEeec-
Confidence 4677888889999999999887655431100 011111112 35678888899999999999887 333322
Q ss_pred CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CC-CeEEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 004885 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QS-GATQMRFQPRLGRILAAAIENYISILDVETQVC 716 (725)
Q Consensus 639 h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~-~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~ 716 (725)
. .....+.. .+..+ +.++.||.|+.+|..+++.+..+.. .. .+.+... .++.|++++.+|.|++||.++|+.
T Consensus 269 ~-~~~~~p~~--~~~~v-yv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 269 A-SSYQGPAV--DDNRL-YVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSF 342 (377)
T ss_pred c-CCccCceE--eCCEE-EEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence 1 11222222 34434 4566799999999999988876632 22 2233333 357889999999999999999999
Q ss_pred EEEEeCCC
Q 004885 717 RLKLQVSH 724 (725)
Q Consensus 717 v~~l~GH~ 724 (725)
+.+++.+.
T Consensus 343 ~~~~~~~~ 350 (377)
T TIGR03300 343 VARLKTDG 350 (377)
T ss_pred EEEEEcCC
Confidence 98887543
No 304
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.12 E-value=0.00022 Score=87.40 Aligned_cols=154 Identities=16% Similarity=0.276 Sum_probs=104.2
Q ss_pred eEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEe----ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004885 558 VESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTL----EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~---Dg~V~IWdl~~~~~i~~l----~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~ 630 (725)
-.+++|-|.|++||+.-. ...|.+|.-+. -.-..| ......|..+.|++|+..|+....|. |.+|-..+-.
T Consensus 259 e~~l~WrPsG~lIA~~q~~~~~~~VvFfErNG-LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 259 EGALSWRPSGNLIASSQRLPDRHDVVFFERNG-LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred cCCccCCCCCCEEEEEEEcCCCcEEEEEecCC-cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence 457999999999998865 34666776433 222222 23456899999999999999987666 9999998866
Q ss_pred eee-EEEec-CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC----CC--------eeE--------------------
Q 004885 631 YSL-RTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN----NG--------SCA-------------------- 676 (725)
Q Consensus 631 ~~l-~~~~~-h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~----t~--------~~v-------------------- 676 (725)
.-+ ..+.- ....+..+.|+|.....|.....+|.+.++++. .+ ..+
T Consensus 337 WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPP 416 (928)
T PF04762_consen 337 WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPP 416 (928)
T ss_pred EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCc
Confidence 222 23321 223455599999877666666655666554432 11 011
Q ss_pred ----EEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004885 677 ----GVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 713 (725)
Q Consensus 677 ----~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~t 713 (725)
..+.....|..++|++++..+++...||.|.+|....
T Consensus 417 PMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 417 PMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred hHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 1222356799999999988889999999999998543
No 305
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=2.2e-05 Score=90.19 Aligned_cols=151 Identities=15% Similarity=0.193 Sum_probs=108.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE
Q 004885 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~ 634 (725)
.+.++|++++ +++|+-|.++|.|++++... .. .+...|+.. ..+|.+++||+.||+|.|-.+.+... ..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~-~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE-IT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc-ce
Confidence 3568899985 78999999999999998753 33 444455544 55799999999999999999988762 33
Q ss_pred EEecCCCCeEEEEEccC----CCeEEEEEeCCCcEEEEECC---CCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEE
Q 004885 635 TFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSIN---NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS 707 (725)
Q Consensus 635 ~~~~h~~~V~sl~fsP~----g~~llaSgs~Dg~I~IwDl~---t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~ 707 (725)
.+. ...++.+|+++|+ ....+++|+..| +.++.-+ +...+......+.|.+|+|..+ +++-..|-.|+
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~---lIAWand~Gv~ 182 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN---LIAWANDDGVK 182 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc---EEEEecCCCcE
Confidence 222 3368999999998 223577888777 6666432 2223323334788999999843 55555666699
Q ss_pred EEECCCCeEEEEEe
Q 004885 708 ILDVETQVCRLKLQ 721 (725)
Q Consensus 708 IwDl~tg~~v~~l~ 721 (725)
|||+.+++.+..++
T Consensus 183 vyd~~~~~~l~~i~ 196 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIP 196 (846)
T ss_pred EEeccccceeeccC
Confidence 99999998887665
No 306
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.09 E-value=0.00016 Score=81.97 Aligned_cols=203 Identities=11% Similarity=0.193 Sum_probs=127.9
Q ss_pred CeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEE
Q 004885 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560 (725)
Q Consensus 481 ~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~ 560 (725)
.-.++.|+.... |+++|+.||.+++.....+.+-....+ .....++..-.++++|++.|.-
T Consensus 16 kL~c~~WNke~g---------------yIAcgG~dGlLKVlKl~t~t~d~~~~g----laa~snLsmNQtLeGH~~sV~v 76 (1189)
T KOG2041|consen 16 KLHCAEWNKESG---------------YIACGGADGLLKVLKLGTDTTDLNKSG----LAAASNLSMNQTLEGHNASVMV 76 (1189)
T ss_pred eEEEEEEcccCC---------------eEEeccccceeEEEEccccCCcccccc----cccccccchhhhhccCcceEEE
Confidence 446677776554 999999999999996544432111111 1112334455688999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEeCCCeEE--------EEECC---
Q 004885 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSADRTVR--------VWDTE--- 627 (725)
Q Consensus 561 i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~--l~~H~~~V~~IafsPd~~~Lasgs~DgtIr--------vWDl~--- 627 (725)
+.|+.....|-+...+|.|.||-+-.+.-... -....+.|.+++|..+|..++..-.||.|. ||.-+
T Consensus 77 vTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg 156 (1189)
T KOG2041|consen 77 VTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG 156 (1189)
T ss_pred EEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch
Confidence 99998888999999999999998755432111 122356788888888888776666666553 34211
Q ss_pred --------------------CCC----------------eeeE----EEecCCCCeEEEEEc--------cCCCeEEEEE
Q 004885 628 --------------------NPD----------------YSLR----TFTGHSTTVMSLDFH--------PSKEDLLCSC 659 (725)
Q Consensus 628 --------------------~~~----------------~~l~----~~~~h~~~V~sl~fs--------P~g~~llaSg 659 (725)
+++ .|.. .+......|..+.|. |+.+ .|+.|
T Consensus 157 ~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavc 235 (1189)
T KOG2041|consen 157 QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVC 235 (1189)
T ss_pred heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEE
Confidence 000 0100 111111235555553 3444 56677
Q ss_pred eCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcC
Q 004885 660 DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 703 (725)
Q Consensus 660 s~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~D 703 (725)
-.+|.+.|..-.+......+...-.+..+.|+++|..|++++.|
T Consensus 236 y~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 236 YANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred EcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCc
Confidence 77777777655544333444444668899999999999988763
No 307
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.05 E-value=2.4e-05 Score=90.79 Aligned_cols=143 Identities=19% Similarity=0.254 Sum_probs=112.5
Q ss_pred CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeC---------C
Q 004885 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH---------D 576 (725)
Q Consensus 506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~---------D 576 (725)
.+++.+|...|+|.+- +..+++.++++.+|++.|.++.. .|++|++||. |
T Consensus 187 nr~lf~G~t~G~V~Lr-------------------D~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D 245 (1118)
T KOG1275|consen 187 NRNLFCGDTRGTVFLR-------------------DPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMD 245 (1118)
T ss_pred CcEEEeecccceEEee-------------------cCCcCceeeeeeccccceeeeec--cCCeEEEeeccccccccccc
Confidence 3677888888887776 55667889999999999998887 6899999986 5
Q ss_pred CcEEEEECCCCeEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEE---CCCCCeeeEEEecCCCCeEEEEEccCC
Q 004885 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWD---TENPDYSLRTFTGHSTTVMSLDFHPSK 652 (725)
Q Consensus 577 g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd-~~~Lasgs~DgtIrvWD---l~~~~~~l~~~~~h~~~V~sl~fsP~g 652 (725)
..|+|||++..+.+.-+.-+.++ .-+.|+|. ...+++++..|.+.+-| +.++...+..+......+..+++++++
T Consensus 246 ~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~ 324 (1118)
T KOG1275|consen 246 PFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNG 324 (1118)
T ss_pred chhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCC
Confidence 56899999887666555444443 56788996 56788889999999999 666643455556666779999999998
Q ss_pred CeEEEEEeCCCcEEEEECC
Q 004885 653 EDLLCSCDNNSEIRYWSIN 671 (725)
Q Consensus 653 ~~llaSgs~Dg~I~IwDl~ 671 (725)
. .++.++.+|.|.+|.-+
T Consensus 325 ~-alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 325 D-ALAFGDHEGHVNLWADR 342 (1118)
T ss_pred c-eEEEecccCcEeeecCC
Confidence 8 78899999999999743
No 308
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.04 E-value=0.0011 Score=74.95 Aligned_cols=111 Identities=14% Similarity=0.143 Sum_probs=78.9
Q ss_pred eEEEEEcC-CCCEEEEE----eCCCcE----EEEECCCCeE--EE-EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004885 558 VESCHFSP-DGKLLATG----GHDKKA----VLWCTESFTV--KS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (725)
Q Consensus 558 V~~i~fSp-dg~~LaSg----s~Dg~V----~IWdl~~~~~--i~-~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWD 625 (725)
..++.||- +...+.+. +.+|.+ .+|++...+. +. +--.....|.|++++|+.+.|+.|+.||+|.+||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 46777876 33444443 334433 3455543321 11 1124678899999999999999999999999999
Q ss_pred CCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC
Q 004885 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (725)
Q Consensus 626 l~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t 672 (725)
...+. ..+....-..+.++|||+|. ++++|+..|.|.+||+.-
T Consensus 288 ~~~~~---t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 288 TTRGV---TLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMAL 330 (545)
T ss_pred cCCCe---eeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeec
Confidence 98764 33334445689999999998 777899899999999863
No 309
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.01 E-value=0.00096 Score=73.79 Aligned_cols=147 Identities=11% Similarity=0.058 Sum_probs=92.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCe--
Q 004885 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-- 643 (725)
Q Consensus 566 dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V-- 643 (725)
++..+++++.|+.|+.+|..+++.+...... ..+.+.... .+..++.++.++.|..||.++++ .+-.+......+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~-~~W~~~~~~~~~~~ 180 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGE-RLWTYSRVTPALTL 180 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCc-eeeEEccCCCceee
Confidence 4677888889999999999999988766532 222211111 35577788889999999999887 333333221111
Q ss_pred ---EEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCC-----------e-EEEEEecCCCEEEEEEcCCeEEE
Q 004885 644 ---MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-----------A-TQMRFQPRLGRILAAAIENYISI 708 (725)
Q Consensus 644 ---~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~-----------V-~sv~fspdg~~Lla~s~Dg~V~I 708 (725)
.+..+. + . .++.+..++.|..+|+++|+.+........ + .+..+ .++.+++++.++.++.
T Consensus 181 ~~~~sp~~~-~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a 255 (377)
T TIGR03300 181 RGSASPVIA-D-G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAA 255 (377)
T ss_pred cCCCCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEE
Confidence 111122 2 3 455677789999999999987765432110 0 11112 2356777777888888
Q ss_pred EECCCCeEEEEE
Q 004885 709 LDVETQVCRLKL 720 (725)
Q Consensus 709 wDl~tg~~v~~l 720 (725)
||+++|+.+-..
T Consensus 256 ~d~~tG~~~W~~ 267 (377)
T TIGR03300 256 LDLRSGRVLWKR 267 (377)
T ss_pred EECCCCcEEEee
Confidence 888888766544
No 310
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.00037 Score=80.96 Aligned_cols=195 Identities=11% Similarity=0.121 Sum_probs=127.1
Q ss_pred EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC-eEEEEEcCCCCEEEEEeCCC-----cEEE
Q 004885 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK-VESCHFSPDGKLLATGGHDK-----KAVL 581 (725)
Q Consensus 508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~-V~~i~fSpdg~~LaSgs~Dg-----~V~I 581 (725)
.++.|+.||.|..+ ...+..+..+.++... |..+....+..+|++.++|+ .|+|
T Consensus 37 ~vvigt~~G~V~~L--------------------n~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llki 96 (933)
T KOG2114|consen 37 SVVIGTADGRVVIL--------------------NSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKI 96 (933)
T ss_pred eEEEeeccccEEEe--------------------cccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEE
Confidence 78889999998877 2233444556666666 44444443446888887776 4899
Q ss_pred EECCCC------eEE---EEec----cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC---CCCeeeEEEecCCCCeEE
Q 004885 582 WCTESF------TVK---STLE----EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NPDYSLRTFTGHSTTVMS 645 (725)
Q Consensus 582 Wdl~~~------~~i---~~l~----~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~---~~~~~l~~~~~h~~~V~s 645 (725)
|+++.. .++ +.+. ....++.+++.+.+-..+++|-.||.|.++.-+ ...........-.++|+.
T Consensus 97 w~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITg 176 (933)
T KOG2114|consen 97 WDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITG 176 (933)
T ss_pred ecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCcee
Confidence 998632 233 1121 124678899999998889999999999988432 222122333344578999
Q ss_pred EEEccCCCeEEEEEeCCCcEEEEECCCCee-EEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe-C
Q 004885 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-V 722 (725)
Q Consensus 646 l~fsP~g~~llaSgs~Dg~I~IwDl~t~~~-v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~-G 722 (725)
+.|..++..+++++. -..|.+|.+....+ ...+.. +..+.|..|++....++++ .+..|.+||......-..|. |
T Consensus 177 L~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca-~~e~l~fY~sd~~~~cfaf~~g 254 (933)
T KOG2114|consen 177 LALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA-GSEFLYFYDSDGRGPCFAFEVG 254 (933)
T ss_pred eEEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe-cCceEEEEcCCCcceeeeecCC
Confidence 999999886443443 35799999985442 333443 5567788887764435544 45679999988766666666 6
Q ss_pred CC
Q 004885 723 SH 724 (725)
Q Consensus 723 H~ 724 (725)
|.
T Consensus 255 ~k 256 (933)
T KOG2114|consen 255 EK 256 (933)
T ss_pred Ce
Confidence 53
No 311
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.00 E-value=0.0012 Score=70.16 Aligned_cols=161 Identities=12% Similarity=0.108 Sum_probs=111.2
Q ss_pred eeeeEEEecCCCCCeEEEEEcCCCCEEEEEe------------------CCCcEEEEECCCCeEEEE--e--ccCCCCeE
Q 004885 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGG------------------HDKKAVLWCTESFTVKST--L--EEHTQWIT 601 (725)
Q Consensus 544 ~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs------------------~Dg~V~IWdl~~~~~i~~--l--~~H~~~V~ 601 (725)
.+..+..+..|.-.-..+.+.|||+.|+++- .+..+.+.|..+++.+.. + ..|...|.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR 166 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence 4566777777777778899999998777651 123455567777777665 4 34778899
Q ss_pred EEEEcCCCCEEEEEeCCC-------eEEEEECCCCCeeeEEE-------ecCCCCeEEEEEccCCCeEEEEEeCCCcEEE
Q 004885 602 DVRFSPSLSRLATSSADR-------TVRVWDTENPDYSLRTF-------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667 (725)
Q Consensus 602 ~IafsPd~~~Lasgs~Dg-------tIrvWDl~~~~~~l~~~-------~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~I 667 (725)
.+++.+++..++.+-+.+ .|-+|+.... +..+ ......|-+|++++++..+.+|+-..+++.+
T Consensus 167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~---~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA---LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred eEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc---ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 999999988777765543 2444444332 2222 2234679999999999988889999999999
Q ss_pred EECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004885 668 WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD 710 (725)
Q Consensus 668 wDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwD 710 (725)
||..++.++..... ..+..++..+++ +++++..|.+...+
T Consensus 244 ~d~~tg~~~~~~~l-~D~cGva~~~~~--f~~ssG~G~~~~~~ 283 (305)
T PF07433_consen 244 WDAATGRLLGSVPL-PDACGVAPTDDG--FLVSSGQGQLIRLS 283 (305)
T ss_pred EECCCCCEeecccc-CceeeeeecCCc--eEEeCCCccEEEcc
Confidence 99999999887764 446667666664 44444455544433
No 312
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.98 E-value=2.8e-06 Score=97.53 Aligned_cols=192 Identities=17% Similarity=0.167 Sum_probs=129.8
Q ss_pred cccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 004885 496 TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH 575 (725)
Q Consensus 496 a~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~ 575 (725)
.+.+..+....++++.|+..|.|++|.+..+ ........|...|+-+.-+.||..+++.+.
T Consensus 1103 ~fTc~afs~~~~hL~vG~~~Geik~~nv~sG-------------------~~e~s~ncH~SavT~vePs~dgs~~Ltsss 1163 (1516)
T KOG1832|consen 1103 LFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG-------------------SMEESVNCHQSAVTLVEPSVDGSTQLTSSS 1163 (1516)
T ss_pred ceeeEEeecCCceEEeeeccceEEEEEccCc-------------------cccccccccccccccccccCCcceeeeecc
Confidence 3445555667789999999999999955444 233455689999999999999997766544
Q ss_pred CC--cEEEEECCC-CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEec---CCCCeEEEEEc
Q 004885 576 DK--KAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG---HSTTVMSLDFH 649 (725)
Q Consensus 576 Dg--~V~IWdl~~-~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~---h~~~V~sl~fs 649 (725)
-. ..-+|++.+ +...+.|.+ ..++.|+.....-+.|+....+.|||+.+...+...+.+ ....-.++.|+
T Consensus 1164 ~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~Fs 1239 (1516)
T KOG1832|consen 1164 SSSPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFS 1239 (1516)
T ss_pred ccCchHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccC
Confidence 33 467999865 445555543 457788765333344444456889999998743333332 22234778899
Q ss_pred cCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 650 P~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
|+...+| +|| .+||++..+.++.|..-..-..=.|+|.|..++.-+ .|||++|.+.+++.+
T Consensus 1240 P~D~LIl----ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1240 PCDTLIL----NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVP 1300 (1516)
T ss_pred CCcceEe----eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhHHHHHHhcCc
Confidence 9977333 255 379999988888876422222234899998887754 499999987666543
No 313
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.98 E-value=0.00025 Score=79.83 Aligned_cols=76 Identities=20% Similarity=0.213 Sum_probs=64.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004885 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (725)
Q Consensus 553 ~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~ 630 (725)
.....|.|++++|+...|+.|+.||+|.+||...+... +..+.-.++.++|||+|..|++|+.-|.+.+||+.-..
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 56778999999999999999999999999998765433 33345678899999999999999999999999986543
No 314
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.95 E-value=0.00066 Score=74.87 Aligned_cols=150 Identities=17% Similarity=0.133 Sum_probs=104.3
Q ss_pred EEEEEcCCCCEEEEEe-----------CCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe--CCCeEEEEE
Q 004885 559 ESCHFSPDGKLLATGG-----------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS--ADRTVRVWD 625 (725)
Q Consensus 559 ~~i~fSpdg~~LaSgs-----------~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs--~DgtIrvWD 625 (725)
..+.|.+.|++|++-- ....++|+++... .+....+-.++|.+++|.|.++.+++++ .+-.+.++|
T Consensus 226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~ 304 (561)
T COG5354 226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER-SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFD 304 (561)
T ss_pred cEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc-ccceeccccccceeeeecccCCceeEEecccccceeecc
Confidence 4577888888665321 1246788888643 3333335688999999999988877665 578899999
Q ss_pred CCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEe--CCCcEEEEECCCCeeEE-EEecCCCeEEEEEecCCCEEEEEEc
Q 004885 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRILAAAI 702 (725)
Q Consensus 626 l~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs--~Dg~I~IwDl~t~~~v~-~~~~~~~V~sv~fspdg~~Lla~s~ 702 (725)
++.. ++.+ .....=..+.|+|.++++|++|- .-|.|-|||......+. .+.+ ....-+.|+||+.++.+...
T Consensus 305 lr~N---l~~~-~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~-~n~s~~~wspd~qF~~~~~t 379 (561)
T COG5354 305 LRGN---LRFY-FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG-LNTSYCDWSPDGQFYDTDTT 379 (561)
T ss_pred cccc---eEEe-cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeec-CCceEeeccCCceEEEecCC
Confidence 9865 2222 22334466889999998876543 34679999988654444 5543 45666789999998877643
Q ss_pred ------CCeEEEEECCCC
Q 004885 703 ------ENYISILDVETQ 714 (725)
Q Consensus 703 ------Dg~V~IwDl~tg 714 (725)
|+.|+|||+...
T Consensus 380 s~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 380 SEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred CcccccCcceEEEEecCc
Confidence 789999998643
No 315
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.92 E-value=0.0003 Score=80.96 Aligned_cols=150 Identities=11% Similarity=0.067 Sum_probs=105.6
Q ss_pred EEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-----------------------
Q 004885 562 HFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------------------- 617 (725)
Q Consensus 562 ~fSpdg~~La-Sgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~----------------------- 617 (725)
-+++||+.+. +.-+.+.|.+.|.++.+....+.- ......++++|+++++++.+.
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn 277 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN 277 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence 3456776553 333456777888887766665543 224456677888877776651
Q ss_pred -----------------CCeEEEEECCC----CCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe--
Q 004885 618 -----------------DRTVRVWDTEN----PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-- 674 (725)
Q Consensus 618 -----------------DgtIrvWDl~~----~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~-- 674 (725)
+++|.+.|..+ .. .+..+..-....+.|+++|||+++++++..+.+|.|+|+.+.+
T Consensus 278 i~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~-~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~ 356 (635)
T PRK02888 278 IARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGS-ALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDL 356 (635)
T ss_pred hHHHHHhhhCCCEEEECCCEEEEEECCccccCCc-ceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhh
Confidence 24577788776 22 2333333445678999999999999999999999999998754
Q ss_pred ----------eEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004885 675 ----------CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 713 (725)
Q Consensus 675 ----------~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~t 713 (725)
.+...+...+....+|+++|..+.+.--|..|..||+.+
T Consensus 357 ~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 357 FDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 244444456677889999987666667799999999987
No 316
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.91 E-value=0.00053 Score=70.15 Aligned_cols=144 Identities=11% Similarity=0.011 Sum_probs=95.7
Q ss_pred CCCcEEEEECCCCeEEEEeccCCCCeEEEE--EcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCC
Q 004885 575 HDKKAVLWCTESFTVKSTLEEHTQWITDVR--FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652 (725)
Q Consensus 575 ~Dg~V~IWdl~~~~~i~~l~~H~~~V~~Ia--fsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g 652 (725)
.+++|..||..+++.+....- ...+.... ..+++.++++++.++.|..||..+++ .+-.+.. ...+...... .+
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~-~~W~~~~-~~~~~~~~~~-~~ 76 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGK-VLWRFDL-PGPISGAPVV-DG 76 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSE-EEEEEEC-SSCGGSGEEE-ET
T ss_pred CCCEEEEEECCCCCEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCC-EEEEeec-cccccceeee-cc
Confidence 368999999999999887753 11122222 23356788888999999999999987 4444443 2221111122 23
Q ss_pred CeEEEEEeCCCcEEEEECCCCeeEEEE-ecC----CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885 653 EDLLCSCDNNSEIRYWSINNGSCAGVF-KCQ----SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVS 723 (725)
Q Consensus 653 ~~llaSgs~Dg~I~IwDl~t~~~v~~~-~~~----~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH 723 (725)
..++ .+..++.|+.+|..+|+.+..+ ... .....+....++..++++..++.|..+|+++|+.+-.+..+
T Consensus 77 ~~v~-v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~ 151 (238)
T PF13360_consen 77 GRVY-VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVG 151 (238)
T ss_dssp TEEE-EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESS
T ss_pred cccc-cccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecC
Confidence 3344 4456789999999999999884 322 11223333334678888888999999999999998887653
No 317
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.91 E-value=0.0009 Score=82.18 Aligned_cols=152 Identities=16% Similarity=0.206 Sum_probs=101.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeC---C---CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC---CCeEEEE
Q 004885 554 STSKVESCHFSPDGKLLATGGH---D---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVW 624 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSgs~---D---g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~---DgtIrvW 624 (725)
+.+.-..|+|-.||.++|+.+. + ..|+||+-+ |....+.+.-.+--.+++|.|.|.+||+.-. ...|.+|
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence 4556778999999999998764 2 478999965 6655555544455568899999999998864 2344455
Q ss_pred ECCCCCeeeEEE----ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe----cCCCeEEEEEecCCC-
Q 004885 625 DTENPDYSLRTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQMRFQPRLG- 695 (725)
Q Consensus 625 Dl~~~~~~l~~~----~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~----~~~~V~sv~fspdg~- 695 (725)
.- ++- .-..| ......|..+.|++++. +||..-.| .|.+|-..+.....+.+ ....+..+.|+|...
T Consensus 287 Er-NGL-rhgeF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~ 362 (928)
T PF04762_consen 287 ER-NGL-RHGEFTLRFDPEEEKVIELAWNSDSE-ILAVWLED-RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPL 362 (928)
T ss_pred ec-CCc-EeeeEecCCCCCCceeeEEEECCCCC-EEEEEecC-CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCC
Confidence 43 222 11222 23456799999999988 66665544 49999998876543332 234456699999755
Q ss_pred EEEEEEcCCeEEEEE
Q 004885 696 RILAAAIENYISILD 710 (725)
Q Consensus 696 ~Lla~s~Dg~V~IwD 710 (725)
.|.+.+.++.+.+++
T Consensus 363 ~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 363 RLHVLTSNGQYEIYD 377 (928)
T ss_pred EEEEEecCCcEEEEE
Confidence 355555556665544
No 318
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.00034 Score=75.96 Aligned_cols=151 Identities=16% Similarity=0.187 Sum_probs=111.2
Q ss_pred EEEEE-eCCCcEEEEECCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC----CCe----------
Q 004885 569 LLATG-GHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN----PDY---------- 631 (725)
Q Consensus 569 ~LaSg-s~Dg~V~IWdl~~~~--~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~----~~~---------- 631 (725)
.|+++ -.++.+.|+|-.... ....-.-|..+|.++.+.+-++.+++....|.|..|.... +..
T Consensus 113 ~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eT 192 (558)
T KOG0882|consen 113 LIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHET 192 (558)
T ss_pred eEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccc
Confidence 34433 456889999976533 2333356899999999999999999999999999999873 110
Q ss_pred eeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec------------------------------
Q 004885 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------------------------------ 681 (725)
Q Consensus 632 ~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~------------------------------ 681 (725)
-+..+........++.|+|++. .+.+-+.|..|+++++++++.+..+..
T Consensus 193 dLy~f~K~Kt~pts~Efsp~g~-qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverel 271 (558)
T KOG0882|consen 193 DLYGFPKAKTEPTSFEFSPDGA-QISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVEREL 271 (558)
T ss_pred hhhcccccccCccceEEccccC-cccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhH
Confidence 1122333456789999999988 556777899999999999876654431
Q ss_pred ----CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 682 ----QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 682 ----~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
...-+.++|+..+.+|+.++-=| |+|+++.++++++.+-
T Consensus 272 ek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 272 EKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred hhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 11235678888888888887655 9999999999998774
No 319
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.82 E-value=0.0057 Score=68.27 Aligned_cols=177 Identities=15% Similarity=0.100 Sum_probs=104.6
Q ss_pred eeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe--cc------CCCCeEEEEEcC-----CC-
Q 004885 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EE------HTQWITDVRFSP-----SL- 609 (725)
Q Consensus 544 ~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l--~~------H~~~V~~IafsP-----d~- 609 (725)
.+.+...++...+.|++++.| |=-++|+|..+|.+.|.|++....+..- .. ....|+++.|.. |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 467777888889999999998 5669999999999999999988877652 22 234688888863 22
Q ss_pred --CEEEEEeCCCeEEEEECCC---CCeee---EEEecCCCCeEEEE-EccC--------------------CCeEEEEEe
Q 004885 610 --SRLATSSADRTVRVWDTEN---PDYSL---RTFTGHSTTVMSLD-FHPS--------------------KEDLLCSCD 660 (725)
Q Consensus 610 --~~Lasgs~DgtIrvWDl~~---~~~~l---~~~~~h~~~V~sl~-fsP~--------------------g~~llaSgs 660 (725)
-.+++|...|.+.+|.+.- +.+.+ .....+.+.|..|. |+.+ -+.+++.++
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 3688999999999998751 11111 12224556666665 3221 022444554
Q ss_pred CCCcEEEEECCCCeeEEEEecC-CCeEEEEEe-----cCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885 661 NNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQ-----PRLGRILAAAIENYISILDVETQVCRLKLQV 722 (725)
Q Consensus 661 ~Dg~I~IwDl~t~~~v~~~~~~-~~V~sv~fs-----pdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~G 722 (725)
+..|||+...+.+..+..... ..+..+++- ..+..|++-..+|.|++|.+-.-+.+..+.-
T Consensus 234 -e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l 300 (395)
T PF08596_consen 234 -ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL 300 (395)
T ss_dssp -SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred -ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC
Confidence 678999999988776655521 223444553 2344566667899999999998888877654
No 320
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=0.00084 Score=74.66 Aligned_cols=152 Identities=11% Similarity=0.188 Sum_probs=95.8
Q ss_pred EEEEEcCCCCEEEEEeC----------CCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEE
Q 004885 559 ESCHFSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWD 625 (725)
Q Consensus 559 ~~i~fSpdg~~LaSgs~----------Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~---DgtIrvWD 625 (725)
..+.|-.+|.+|+.--. -..+-|+.++....-.....-...|...+|.|.|+.+++.+. ..++.+|.
T Consensus 397 ckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~ 476 (698)
T KOG2314|consen 397 CKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYA 476 (698)
T ss_pred cEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEE
Confidence 34566667777764211 112344444432221112234678899999999998877654 35788998
Q ss_pred CCC-CCe--eeEEEecCCCCeEEEEEccCCCeEEEEE--eCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEE
Q 004885 626 TEN-PDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSC--DNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILA 699 (725)
Q Consensus 626 l~~-~~~--~l~~~~~h~~~V~sl~fsP~g~~llaSg--s~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla 699 (725)
+++ ... .+..+. ....+.|-|+|.|..+++.+ +..|.+.++|+....+..+-.. +...+.+.|+|.|+|+++
T Consensus 477 ~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT 554 (698)
T KOG2314|consen 477 VETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVT 554 (698)
T ss_pred eecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEE
Confidence 873 221 122232 24578899999999665544 3478899999986444333222 567889999999999999
Q ss_pred EEc------CCeEEEEECC
Q 004885 700 AAI------ENYISILDVE 712 (725)
Q Consensus 700 ~s~------Dg~V~IwDl~ 712 (725)
+++ |..-+||++.
T Consensus 555 ~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 555 SSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred eeehhhhccccceEEEEee
Confidence 876 3445555543
No 321
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=0.00053 Score=76.21 Aligned_cols=156 Identities=17% Similarity=0.198 Sum_probs=107.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-----------CCeEEEEEC
Q 004885 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-----------DRTVRVWDT 626 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-----------DgtIrvWDl 626 (725)
-+-+.|||.|.||+|--.-| |.+|--.+...+..|. |. .|.-+.|+|+.+||+|=+. ...++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 35689999999999986554 8899877666665554 54 4889999999999998653 247999999
Q ss_pred CCCCeeeEEEecCC---CCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEc
Q 004885 627 ENPDYSLRTFTGHS---TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI 702 (725)
Q Consensus 627 ~~~~~~l~~~~~h~---~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~ 702 (725)
.++. ..+.|.... ..-.-+.|+.|+++ + ++.....|.||+.....++..-.. -.+|....|+|.+..|+.=..
T Consensus 290 ~tG~-lkrsF~~~~~~~~~WP~frWS~DdKy-~-Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtp 366 (698)
T KOG2314|consen 290 ATGL-LKRSFPVIKSPYLKWPIFRWSHDDKY-F-ARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTP 366 (698)
T ss_pred cccc-hhcceeccCCCccccceEEeccCCce-e-EEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcc
Confidence 9987 566665422 22345789999873 3 344446799999876443322111 467888999998666554333
Q ss_pred C-----CeEEEEECCCCeEEEE
Q 004885 703 E-----NYISILDVETQVCRLK 719 (725)
Q Consensus 703 D-----g~V~IwDl~tg~~v~~ 719 (725)
+ ..+.+..+-+++.+++
T Consensus 367 e~~~~parvtL~evPs~~~iRt 388 (698)
T KOG2314|consen 367 ETNNIPARVTLMEVPSKREIRT 388 (698)
T ss_pred cccCCcceEEEEecCccceeee
Confidence 1 4566776666655544
No 322
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.71 E-value=0.00071 Score=76.12 Aligned_cols=162 Identities=19% Similarity=0.205 Sum_probs=107.4
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEe---CC-CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCe--EEE
Q 004885 551 IPASTSKVESCHFSPDGKLLATGG---HD-KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRT--VRV 623 (725)
Q Consensus 551 l~~H~~~V~~i~fSpdg~~LaSgs---~D-g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasg-s~Dgt--Irv 623 (725)
+..-...+..-+|+|++..++..+ .. ..++++|+++++....+. ..+.-...+|+||+++|+-+ ..|+. |.+
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~ 266 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYL 266 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEE
Confidence 334455678889999998766542 22 358999998876554443 23344566899999887654 45665 555
Q ss_pred EECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc--EEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEE
Q 004885 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 701 (725)
Q Consensus 624 WDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~--I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s 701 (725)
.|+.... +..+..-.+.-+.-.|+|+|++++++.+..|. |.++|++.+...+.......-..-.|+|||.+|+..+
T Consensus 267 ~dl~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 267 MDLDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFES 344 (425)
T ss_pred EcCCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEe
Confidence 5776655 33344333444577899999999988887776 6666777665533333333333778999999998887
Q ss_pred cC-Ce--EEEEECCCCe
Q 004885 702 IE-NY--ISILDVETQV 715 (725)
Q Consensus 702 ~D-g~--V~IwDl~tg~ 715 (725)
.. |. |.++|+.++.
T Consensus 345 ~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 345 SSGGQWDIDKNDLASGG 361 (425)
T ss_pred ccCCceeeEEeccCCCC
Confidence 53 43 7778877665
No 323
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.65 E-value=0.0043 Score=64.51 Aligned_cols=172 Identities=11% Similarity=0.118 Sum_probs=108.1
Q ss_pred CeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEE
Q 004885 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560 (725)
Q Consensus 481 ~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~ 560 (725)
.-..++|+||++ +++.....|+|++|+.....--...... .. .-.-...|..
T Consensus 45 QWRkl~WSpD~t---------------lLa~a~S~G~i~vfdl~g~~lf~I~p~~------~~-------~~d~~~Aiag 96 (282)
T PF15492_consen 45 QWRKLAWSPDCT---------------LLAYAESTGTIRVFDLMGSELFVIPPAM------SF-------PGDLSDAIAG 96 (282)
T ss_pred hheEEEECCCCc---------------EEEEEcCCCeEEEEecccceeEEcCccc------cc-------CCccccceee
Confidence 567889999998 8888888899999955432100000000 00 0012344666
Q ss_pred EEEcCCC------CEEEEEeCCCcEEEEECCC-----CeEEEEec---cCCCCeEEEEEcCCCCEEEEEeC----CC---
Q 004885 561 CHFSPDG------KLLATGGHDKKAVLWCTES-----FTVKSTLE---EHTQWITDVRFSPSLSRLATSSA----DR--- 619 (725)
Q Consensus 561 i~fSpdg------~~LaSgs~Dg~V~IWdl~~-----~~~i~~l~---~H~~~V~~IafsPd~~~Lasgs~----Dg--- 619 (725)
+.|..-. ..|++-.++|.++-|-+.. ....+++. .+...|+++.|+|..++|++|+. |+
T Consensus 97 l~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~ 176 (282)
T PF15492_consen 97 LIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK 176 (282)
T ss_pred eEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc
Confidence 6664311 1466667888887776532 23333332 24678999999999998887764 11
Q ss_pred ----eEEEEECCCCCe-------------------------eeEEE---ecCCCCeEEEEEccCCCeEEEEEeCCCcEEE
Q 004885 620 ----TVRVWDTENPDY-------------------------SLRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667 (725)
Q Consensus 620 ----tIrvWDl~~~~~-------------------------~l~~~---~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~I 667 (725)
-+..|.+-++.. .+..+ ......|..|..+|+|. +||+...+|.|.+
T Consensus 177 a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsL 255 (282)
T PF15492_consen 177 ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSL 255 (282)
T ss_pred ccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCC-EEEEEEcCCeEEE
Confidence 356676533220 00011 11346799999999998 7888999999999
Q ss_pred EECCCCeeEEEEec
Q 004885 668 WSINNGSCAGVFKC 681 (725)
Q Consensus 668 wDl~t~~~v~~~~~ 681 (725)
|++.+-++...++.
T Consensus 256 W~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 256 WEIPSLRLQRSWKQ 269 (282)
T ss_pred EecCcchhhcccch
Confidence 99998877777654
No 324
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.54 E-value=2.2e-05 Score=88.14 Aligned_cols=186 Identities=16% Similarity=0.231 Sum_probs=122.2
Q ss_pred cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEe----CCCcEEE
Q 004885 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGG----HDKKAVL 581 (725)
Q Consensus 507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp-dg~~LaSgs----~Dg~V~I 581 (725)
.+++.|..+|.|.+....+..+. ......+|....+|++|++ |.++||+|- .|..+.|
T Consensus 71 cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I 133 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI 133 (783)
T ss_pred hhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHHHHhhhhhhcccCCccc
Confidence 47888999999998865554322 1223457788899999998 667777773 3568999
Q ss_pred EECCCC--eEE--EEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEE
Q 004885 582 WCTESF--TVK--STLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656 (725)
Q Consensus 582 Wdl~~~--~~i--~~l~-~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~ll 656 (725)
||+.+. .+. ..|. +......+++|..+.+.+++|...+.++++|++........+ .+..|..+..+|-...++
T Consensus 134 wdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~ 211 (783)
T KOG1008|consen 134 WDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYF 211 (783)
T ss_pred eecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCce
Confidence 999765 111 1122 133456688888888899999999999999998432111111 123456677788444467
Q ss_pred EEEeCCCcEEEEE-CCCC-eeEEEEec-----CCCeEEEEEecCCCE-EEEEEc-CCeEEEEECC
Q 004885 657 CSCDNNSEIRYWS-INNG-SCAGVFKC-----QSGATQMRFQPRLGR-ILAAAI-ENYISILDVE 712 (725)
Q Consensus 657 aSgs~Dg~I~IwD-l~t~-~~v~~~~~-----~~~V~sv~fspdg~~-Lla~s~-Dg~V~IwDl~ 712 (725)
|+-. ||.|.+|| .++- .++..+.+ ...+..++|+|...- +++... .++|+.||+.
T Consensus 212 cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 212 CSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred eccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 6655 99999999 4332 22222222 234899999997543 444444 4889999875
No 325
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.54 E-value=0.00066 Score=78.45 Aligned_cols=70 Identities=20% Similarity=0.239 Sum_probs=63.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004885 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~ 627 (725)
+++++|+|..-.|+.|=.-|.+.+|...+.+.-.....|..+|..+.|+++|..++|+..-|.|.+|.++
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 6779999988889999889999999988877766777899999999999999999999999999999876
No 326
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.038 Score=61.53 Aligned_cols=163 Identities=17% Similarity=0.194 Sum_probs=121.5
Q ss_pred CeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCee
Q 004885 557 KVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYS 632 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~---Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs-~DgtIrvWDl~~~~~~ 632 (725)
.-..++|+++++.+.++.. +++|.+.|..+.+.+.+...-..+ ..++++|++..++++. .+++|.+.|..... .
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~-v 194 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNS-V 194 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcc-e
Confidence 4678999999987776655 689999998888877765433334 8999999999777765 68899999977654 2
Q ss_pred eEE----EecCCCCeEEEEEccCCCeEEEEEeCC--CcEEEEECCCCeeEEE-EecCC-CeEEEEEecCCCEEEEEEc-C
Q 004885 633 LRT----FTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGV-FKCQS-GATQMRFQPRLGRILAAAI-E 703 (725)
Q Consensus 633 l~~----~~~h~~~V~sl~fsP~g~~llaSgs~D--g~I~IwDl~t~~~v~~-~~~~~-~V~sv~fspdg~~Lla~s~-D 703 (725)
.+. ...-...-..+.++|+|.+++++...+ +.|.+.|..++..... +.... ....+.++|+|..+.+... .
T Consensus 195 ~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~ 274 (381)
T COG3391 195 VRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQG 274 (381)
T ss_pred eccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCC
Confidence 220 011123346789999999888777765 6899999998877765 22222 5678899999998888855 4
Q ss_pred CeEEEEECCCCeEEEEEe
Q 004885 704 NYISILDVETQVCRLKLQ 721 (725)
Q Consensus 704 g~V~IwDl~tg~~v~~l~ 721 (725)
+.|.+.|..+...+..+.
T Consensus 275 ~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 275 GTVSVIDGATDRVVKTGP 292 (381)
T ss_pred CeEEEEeCCCCceeeeec
Confidence 899999999987777654
No 327
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.45 E-value=0.055 Score=56.57 Aligned_cols=152 Identities=12% Similarity=0.233 Sum_probs=91.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe------EEEEe-----ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT------VKSTL-----EEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~------~i~~l-----~~H~~~V~~IafsPd~~~Lasgs~DgtIrvW 624 (725)
+..-.|++..++.++++.-.++.+.++++.... ....+ ..+...+..++|+|....|+++....-.+||
T Consensus 65 ~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~ 144 (248)
T PF06977_consen 65 GDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLY 144 (248)
T ss_dssp SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEE
T ss_pred CCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhE
Confidence 457788998778777776678999999884311 11111 1345678999999987777777766666666
Q ss_pred ECCC--CCeeeE--EEe------cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC----------C
Q 004885 625 DTEN--PDYSLR--TFT------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS----------G 684 (725)
Q Consensus 625 Dl~~--~~~~l~--~~~------~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~----------~ 684 (725)
.+.. ....+. ... .....+.++.|+|....+++..+.+..|.++| .+|+.+..+.... .
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~Q 223 (248)
T PF06977_consen 145 EVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQ 223 (248)
T ss_dssp EEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---S
T ss_pred EEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCC
Confidence 6653 211111 111 13355899999999888999999899999999 6688877776422 3
Q ss_pred eEEEEEecCCCEEEEEEcCCeEEEE
Q 004885 685 ATQMRFQPRLGRILAAAIENYISIL 709 (725)
Q Consensus 685 V~sv~fspdg~~Lla~s~Dg~V~Iw 709 (725)
...|+|.++| .|+.++.-+..++|
T Consensus 224 pEGIa~d~~G-~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 224 PEGIAFDPDG-NLYIVSEPNLFYRF 247 (248)
T ss_dssp EEEEEE-TT---EEEEETTTEEEEE
T ss_pred ccEEEECCCC-CEEEEcCCceEEEe
Confidence 7889999986 56666777766665
No 328
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.43 E-value=0.031 Score=58.36 Aligned_cols=171 Identities=12% Similarity=0.175 Sum_probs=100.6
Q ss_pred EEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeccC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004885 548 FQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWD 625 (725)
Q Consensus 548 ~~~l~~H~~~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~~~~~i~~l~~H-~~~V~~IafsPd~~~Lasgs~DgtIrvWD 625 (725)
.+.+.+-...|..|+|+|+.+ ++++....+.|..++. +++.++.+.-. .+....|++.-++.++++.-.++.+.+++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 455666667799999999755 6667777888888886 46777766433 35688999988887777776789999998
Q ss_pred CCCCCe--ee---EEEe-----cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC---CeeEEEEe---------cCC
Q 004885 626 TENPDY--SL---RTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---GSCAGVFK---------CQS 683 (725)
Q Consensus 626 l~~~~~--~l---~~~~-----~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t---~~~v~~~~---------~~~ 683 (725)
+..... .. ..+. .+...+..|+|+|.+..++++.- ..-..||.++. ...+.... ...
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE-~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE-RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE-SSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC-CCChhhEEEccccCccceeeccccccccccceec
Confidence 843221 11 1111 24456899999999887886654 44455655543 22222111 134
Q ss_pred CeEEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEe
Q 004885 684 GATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 684 ~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~tg~~v~~l~ 721 (725)
.+.++.++|..+.|++-+. ...|.++| .+|+++..+.
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~ 209 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLS 209 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEE
Confidence 5789999998777666655 67899999 6677666553
No 329
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.43 E-value=0.0062 Score=72.67 Aligned_cols=143 Identities=12% Similarity=0.104 Sum_probs=97.9
Q ss_pred CCCEEEEE-eCCCcEEEEECCCCeEEEEeccCCCC-eEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCCeeeEEEec
Q 004885 566 DGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSP-----SLSRLATSSADRTVRVWDTENPDYSLRTFTG 638 (725)
Q Consensus 566 dg~~LaSg-s~Dg~V~IWdl~~~~~i~~l~~H~~~-V~~IafsP-----d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~ 638 (725)
+.++|+.- .....|+-.|++.|+.+..+..|... |.+++-.. ...-.++|-.+..+..||.+-....+.....
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 44444443 45678999999999999999887654 55443221 1334677778889999999865422222111
Q ss_pred ----CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004885 639 ----HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDV 711 (725)
Q Consensus 639 ----h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl 711 (725)
......|++-..+| .||.|+.+|.||+||--..+....+.+ +.+|..|+.+.||++|+++ ++..|.++|.
T Consensus 572 k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaT-c~tyLlLi~t 646 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILAT-CKTYLLLIDT 646 (794)
T ss_pred cccccCCCceEEEecCCc--eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEe-ecceEEEEEE
Confidence 23446777777676 478899999999999543333344444 7899999999999887665 4567777775
No 330
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.00035 Score=75.07 Aligned_cols=92 Identities=14% Similarity=0.230 Sum_probs=79.9
Q ss_pred EEEEECCCCeEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEE
Q 004885 579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 657 (725)
Q Consensus 579 V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~-~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~lla 657 (725)
|++.+..+.+....+..|...|.+++|+|..+ ++..++.+.+|+|.|+++.. ++..+..+ ..+++++|+-+..+++.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-VVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce-eeeheecc-CCceeeeeccCCcceeE
Confidence 77777666666667788899999999999766 78888999999999999877 67788777 78999999999998999
Q ss_pred EEeCCCcEEEEECCC
Q 004885 658 SCDNNSEIRYWSINN 672 (725)
Q Consensus 658 Sgs~Dg~I~IwDl~t 672 (725)
+|..+|.|.|||++.
T Consensus 253 aGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQ 267 (463)
T ss_pred EeccCceEEEEEccC
Confidence 999999999999985
No 331
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.41 E-value=0.016 Score=70.12 Aligned_cols=156 Identities=17% Similarity=0.247 Sum_probs=98.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECC----C-------------------CeEEEEeccC---------------
Q 004885 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE----S-------------------FTVKSTLEEH--------------- 596 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~----~-------------------~~~i~~l~~H--------------- 596 (725)
.+.|.+++||||+.+++..+.+.+|.+.+-. . |+....|.+.
T Consensus 109 d~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~ 188 (1265)
T KOG1920|consen 109 DNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKA 188 (1265)
T ss_pred cCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccccc
Confidence 4569999999999999988888888776431 0 1111122211
Q ss_pred ------CCCeEEEEEcCCCCEEEEEe----CC-CeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEE---eCC
Q 004885 597 ------TQWITDVRFSPSLSRLATSS----AD-RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC---DNN 662 (725)
Q Consensus 597 ------~~~V~~IafsPd~~~Lasgs----~D-gtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSg---s~D 662 (725)
...=+.|.|.-||.++++.. .+ +.|+|||-+ +. .-.+-....+--.+++|-|.|. ++++- ..|
T Consensus 189 ~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~-Lns~se~~~~l~~~LsWkPsgs-~iA~iq~~~sd 265 (1265)
T KOG1920|consen 189 LEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GA-LNSTSEPVEGLQHSLSWKPSGS-LIAAIQCKTSD 265 (1265)
T ss_pred ccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-ch-hhcccCcccccccceeecCCCC-eEeeeeecCCC
Confidence 11123589999999998843 24 799999987 32 1111112223457799999887 44443 245
Q ss_pred CcEEEEECCCCeeEEEE----ec-CCCeEEEEEecCCCEEEEEEc---CCeEEEEECCCC
Q 004885 663 SEIRYWSINNGSCAGVF----KC-QSGATQMRFQPRLGRILAAAI---ENYISILDVETQ 714 (725)
Q Consensus 663 g~I~IwDl~t~~~v~~~----~~-~~~V~sv~fspdg~~Lla~s~---Dg~V~IwDl~tg 714 (725)
+.|.+|.-+ |-....| .. ...|..++|+.++..|++..+ ...|.+|-+.+.
T Consensus 266 ~~IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 266 SDIVFFERN-GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CcEEEEecC-CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 678888643 4333333 22 234999999999877776333 344999988775
No 332
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.34 E-value=0.015 Score=64.95 Aligned_cols=146 Identities=11% Similarity=0.034 Sum_probs=93.7
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeccCCC-------CeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCeeeEEEec
Q 004885 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-------WITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTFTG 638 (725)
Q Consensus 568 ~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~-------~V~~IafsP--d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~ 638 (725)
..++.++.++.|..+|..+++.+........ ....+..+| .+..++.++.++.+..+|+.+++. +-...
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~-~W~~~- 283 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI-VWKRE- 283 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE-EEeec-
Confidence 3566677889999999988887665431110 111122233 356777888899999999998873 22211
Q ss_pred CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 004885 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVC 716 (725)
Q Consensus 639 h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~ 716 (725)
......+.. .+..++ .++.+|.|..+|..+++.+..... .....+..+. +++|++++.||.|.++|..+|+.
T Consensus 284 -~~~~~~~~~--~~~~vy-~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~g~l~v~~~~G~l~~ld~~tG~~ 357 (394)
T PRK11138 284 -YGSVNDFAV--DGGRIY-LVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--NGYLVVGDSEGYLHWINREDGRF 357 (394)
T ss_pred -CCCccCcEE--ECCEEE-EEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--CCEEEEEeCCCEEEEEECCCCCE
Confidence 111222222 234344 566789999999999987765432 1222333332 46888999999999999999998
Q ss_pred EEEEe
Q 004885 717 RLKLQ 721 (725)
Q Consensus 717 v~~l~ 721 (725)
+.+++
T Consensus 358 ~~~~~ 362 (394)
T PRK11138 358 VAQQK 362 (394)
T ss_pred EEEEE
Confidence 87765
No 333
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.024 Score=63.08 Aligned_cols=159 Identities=15% Similarity=0.182 Sum_probs=115.6
Q ss_pred eEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEECCCCCeee
Q 004885 558 VESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSL 633 (725)
Q Consensus 558 V~~i~fSpdg~~L-aSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~---DgtIrvWDl~~~~~~l 633 (725)
-.++++++.++.+ ++...+..|.+.|..+.+.+....- ......++++|++..++++.. ++++.+.|..+... +
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~-~ 153 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV-T 153 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE-E
Confidence 4578888888854 4444568999999877666655432 226678999999988877765 68888888888773 4
Q ss_pred EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEE-----EEecCCCeEEEEEecCCCEEEEEEcC---Ce
Q 004885 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-----VFKCQSGATQMRFQPRLGRILAAAIE---NY 705 (725)
Q Consensus 634 ~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~-----~~~~~~~V~sv~fspdg~~Lla~s~D---g~ 705 (725)
.....-..+ ..++++|+|..++++-..++.|.++|.......+ ..........+.++|+|.++.+.... +.
T Consensus 154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence 433322233 8899999999888777788999999987766553 12224556788999999977766553 59
Q ss_pred EEEEECCCCeEEEE
Q 004885 706 ISILDVETQVCRLK 719 (725)
Q Consensus 706 V~IwDl~tg~~v~~ 719 (725)
|.+.|..++.....
T Consensus 233 v~~id~~~~~v~~~ 246 (381)
T COG3391 233 VLKIDTATGNVTAT 246 (381)
T ss_pred EEEEeCCCceEEEe
Confidence 99999998866654
No 334
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0012 Score=74.76 Aligned_cols=94 Identities=17% Similarity=0.196 Sum_probs=78.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeE-EEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004885 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~-~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l 633 (725)
...|.-+.|+|.-.+||++..+|.|.++.+. ...+.++.-|...++ +++|.|||+.|++|-.||+|++.|++++. .+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~-~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG-RL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC-ce
Confidence 3458889999999999999999999999987 778888887777777 99999999999999999999999999988 34
Q ss_pred EE-EecCCCCeEEEEEcc
Q 004885 634 RT-FTGHSTTVMSLDFHP 650 (725)
Q Consensus 634 ~~-~~~h~~~V~sl~fsP 650 (725)
.. ...-...|.++-|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 43 223345677777764
No 335
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.25 E-value=0.029 Score=60.76 Aligned_cols=159 Identities=13% Similarity=0.173 Sum_probs=94.1
Q ss_pred eeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEe-ccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 004885 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTL-EEHTQWITDVRFSPSLSRLATSSADRTV 621 (725)
Q Consensus 544 ~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~-~i~~l-~~H~~~V~~IafsPd~~~Lasgs~DgtI 621 (725)
.++.+... ...++|++|+-- ++. |+++. .+.|++|++...+ ....- ......|+++... +++|++|+..+.|
T Consensus 78 ~l~~i~~~-~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv 151 (321)
T PF03178_consen 78 KLKLIHST-EVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSV 151 (321)
T ss_dssp EEEEEEEE-EESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSE
T ss_pred EEEEEEEE-eecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCE
Confidence 44444333 346789998876 444 44443 5789999998766 33322 2123356666655 5699999988888
Q ss_pred EEEECCCCCeeeEEE--ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC-------Ce----eEEEEecCCCeEEE
Q 004885 622 RVWDTENPDYSLRTF--TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GS----CAGVFKCQSGATQM 688 (725)
Q Consensus 622 rvWDl~~~~~~l~~~--~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t-------~~----~v~~~~~~~~V~sv 688 (725)
.++..+.....+..+ ......+++++|-++++ .++.++.+|.|.++.... +. .+..+.....|+++
T Consensus 152 ~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~ 230 (321)
T PF03178_consen 152 SLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSF 230 (321)
T ss_dssp EEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEE
T ss_pred EEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceE
Confidence 877554432223322 22345689999987775 777899999999988762 22 23344446778888
Q ss_pred ---EEecC--CC------EEEEEEcCCeEEEE
Q 004885 689 ---RFQPR--LG------RILAAAIENYISIL 709 (725)
Q Consensus 689 ---~fspd--g~------~Lla~s~Dg~V~Iw 709 (725)
++.|. +. .++.++.+|.|.+.
T Consensus 231 ~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 231 RRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 44452 22 37788889988743
No 336
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.25 E-value=0.042 Score=56.59 Aligned_cols=147 Identities=10% Similarity=0.022 Sum_probs=89.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeE-EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeE
Q 004885 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM 644 (725)
Q Consensus 566 dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~-~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~ 644 (725)
-|++++.|++.|.+++.+++++..+..+.... .|. .....+++..+..++.|++....|.++.. ++...+.-.+.-.
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~vk~~a~~d~~~glIycgshd~~~yalD~~~~~-cVykskcgG~~f~ 139 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG-CVYKSKCGGGTFV 139 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehh-hhccceEEcCCCceEEEecCCCcEEEecccccc-eEEecccCCceec
Confidence 47789999999999999999998777665322 222 23356688999999999999999999877 6666554444445
Q ss_pred EEEEccCCCeEEEEEeCCCcEEEEECCCCe--eEEEEecCCCeEE--EEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 004885 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKCQSGATQ--MRFQPRLGRILAAAIENYISILDVETQVCRLK 719 (725)
Q Consensus 645 sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~--~v~~~~~~~~V~s--v~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~ 719 (725)
+-+..|-...++++. ..|.|.-...+.+. .+..+...+++.+ ++.. .++..+.-||.+.-|| +.|+.+.+
T Consensus 140 sP~i~~g~~sly~a~-t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~---~sv~i~~VdG~l~~f~-~sG~qvwr 213 (354)
T KOG4649|consen 140 SPVIAPGDGSLYAAI-TAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCVG---SSVIITTVDGVLTSFD-ESGRQVWR 213 (354)
T ss_pred cceecCCCceEEEEe-ccceEEEEccCCCCcceehhhhcCCccccCceecc---ceEEEEEeccEEEEEc-CCCcEEEe
Confidence 556666333355433 34555545555442 2222222333322 2222 3445555566666665 44544443
No 337
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.25 E-value=0.002 Score=74.64 Aligned_cols=109 Identities=15% Similarity=0.250 Sum_probs=84.8
Q ss_pred EEEEEcCCCCEEEEEeC----CCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE
Q 004885 559 ESCHFSPDGKLLATGGH----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (725)
Q Consensus 559 ~~i~fSpdg~~LaSgs~----Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~ 634 (725)
+-+.|+|...+||+++. .|+|.||- ++|++-+... ..-.+++++|||..-.|+.|-.-|.+.+|...+.+ .-.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e-~ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE-THT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCce-eee
Confidence 45689999999988864 57888884 4555433222 12335679999998888999889999999998776 345
Q ss_pred EEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC
Q 004885 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (725)
Q Consensus 635 ~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~ 671 (725)
....|..+|..+.|+++|. .+++++.-|.|.+|...
T Consensus 96 v~~th~a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGT-VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eccCCCCCceeEEecCCCC-eEEEcCCCceeEEEEee
Confidence 5567999999999999998 66699999999999765
No 338
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.23 E-value=0.0066 Score=68.70 Aligned_cols=142 Identities=13% Similarity=0.156 Sum_probs=81.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE-ECCCCCee
Q 004885 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW-DTENPDYS 632 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvW-Dl~~~~~~ 632 (725)
.......+.++|+|+++++++ ||...|+.....+.... +.-..++|.+. ..+|+-....+|.|+ ++.+..
T Consensus 31 ~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~-- 101 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----GSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEV-- 101 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----EE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-T--
T ss_pred CCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccccc-----CceeEEEEecC-ccEEEEECCCeEEEEEcCcccc--
Confidence 344578999999999999865 78888888555444322 33456789884 457777778899996 443322
Q ss_pred eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE 712 (725)
Q Consensus 633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~ 712 (725)
...+... ..+..|-. |. +|+..+ ++.|.+||+.+++.++.+... +|..|.|++++.+++..+.+ .|.|++..
T Consensus 102 ~k~i~~~-~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~val~t~~-~i~il~~~ 173 (443)
T PF04053_consen 102 VKSIKLP-FSVEKIFG---GN-LLGVKS-SDFICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVALVTKD-SIYILKYN 173 (443)
T ss_dssp T-----S-S-EEEEE----SS-SEEEEE-TTEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred ceEEcCC-cccceEEc---Cc-EEEEEC-CCCEEEEEhhHcceeeEEecC-CCcEEEEECCCCEEEEEeCC-eEEEEEec
Confidence 1222211 22444433 66 454444 448999999999999999864 38999999998888877654 56666543
No 339
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.22 E-value=0.019 Score=69.59 Aligned_cols=151 Identities=17% Similarity=0.171 Sum_probs=88.7
Q ss_pred eEEEEEcCCCCEEEEEe----CC-CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe---CCCeEEEEECCCC
Q 004885 558 VESCHFSPDGKLLATGG----HD-KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS---ADRTVRVWDTENP 629 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs----~D-g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs---~DgtIrvWDl~~~ 629 (725)
=+.|+|--||.++|+.. .+ ++|+|||.+ +..-.+-+...+.=.+++|-|.|..+++.. .|..|.+|.-+.-
T Consensus 198 ~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL 276 (1265)
T KOG1920|consen 198 KTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGL 276 (1265)
T ss_pred CceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCc
Confidence 35699999999999832 24 799999976 433322222334446899999999988764 3567888865422
Q ss_pred Ce--eeEEEecCCCCeEEEEEccCCCeEEEE---EeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCE-EEEEEc
Q 004885 630 DY--SLRTFTGHSTTVMSLDFHPSKEDLLCS---CDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGR-ILAAAI 702 (725)
Q Consensus 630 ~~--~l~~~~~h~~~V~sl~fsP~g~~llaS---gs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~-Lla~s~ 702 (725)
.. ....+......|..++|+.++. +|+. +.....|++|-+.+......-.. -....-+.|+|.-.+ |.+-..
T Consensus 277 ~hg~f~l~~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~~~W~p~~~~~L~v~~~ 355 (1265)
T KOG1920|consen 277 RHGEFVLPFPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKALLMWDPVTEKTLHVLRE 355 (1265)
T ss_pred cccccccCCcccccchheeeecCCCC-ceeeeecccccceEEEEEecCeEEEEEEEEeccccccccccCCCceeEEEEec
Confidence 10 1112222334499999999987 5555 33444599999987654332221 011111667775332 222224
Q ss_pred CCeEEEEE
Q 004885 703 ENYISILD 710 (725)
Q Consensus 703 Dg~V~IwD 710 (725)
+|.+.++|
T Consensus 356 sG~~~v~~ 363 (1265)
T KOG1920|consen 356 SGQRLVRD 363 (1265)
T ss_pred CCcEEEEE
Confidence 45444444
No 340
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.016 Score=67.95 Aligned_cols=155 Identities=16% Similarity=0.217 Sum_probs=102.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCC-----eEEEEECCCC-
Q 004885 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADR-----TVRVWDTENP- 629 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd-~~~Lasgs~Dg-----tIrvWDl~~~- 629 (725)
.|+| |++.+..++.|+.||.|.+.+- ....++.|..+...|...-|.-+ ..+|++.+.|+ .|+|||++..
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4544 4567889999999999999873 34555677777766333334444 46777776654 5999998743
Q ss_pred ----Ceee---EEEe----cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC---C-Ce-eEEEEecCCCeEEEEEecC
Q 004885 630 ----DYSL---RTFT----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---N-GS-CAGVFKCQSGATQMRFQPR 693 (725)
Q Consensus 630 ----~~~l---~~~~----~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~---t-~~-~v~~~~~~~~V~sv~fspd 693 (725)
..++ +.+. ....++.+++.+.+-. .+|.|-.+|.|.++.-+ . +. .........+|+.+.+..+
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 1233 2222 1345788899998855 67778889999988542 1 11 1222234788999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCe
Q 004885 694 LGRILAAAIENYISILDVETQV 715 (725)
Q Consensus 694 g~~Lla~s~Dg~V~IwDl~tg~ 715 (725)
+..++.+..-..|.+|.+....
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~ 204 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRT 204 (933)
T ss_pred CceeEEEEecceeEEEEecCCC
Confidence 8875555555678888887433
No 341
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.19 E-value=8.4e-05 Score=83.67 Aligned_cols=154 Identities=12% Similarity=0.113 Sum_probs=103.9
Q ss_pred CCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCe--EEEEeccCCCCeEEEEEcC-CCCEEEEEe----CCCeEEEEE
Q 004885 555 TSKVESCHFSPDG--KLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSP-SLSRLATSS----ADRTVRVWD 625 (725)
Q Consensus 555 ~~~V~~i~fSpdg--~~LaSgs~Dg~V~IWdl~~~~--~i~~l~~H~~~V~~IafsP-d~~~Lasgs----~DgtIrvWD 625 (725)
.-.+.|+++.-+. .++++|..+|.|.+..++... ...+..+|...+++++|.+ |...||.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 4557888886643 478999999999999886532 2334567889999999999 556676663 266899999
Q ss_pred CCCCCe-ee--EEEe-cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEec-CCCEEEEE
Q 004885 626 TENPDY-SL--RTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP-RLGRILAA 700 (725)
Q Consensus 626 l~~~~~-~l--~~~~-~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fsp-dg~~Lla~ 700 (725)
+.+.-. +. ..|. +....+.++||..+.+ ++.+|...+.|+++|++........-....+..+.++| .++|+ +.
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~-cs 213 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYF-CS 213 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcc-hhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCce-ec
Confidence 987521 11 1122 2445677899996655 77788888899999998322111111123455666666 33444 55
Q ss_pred EcCCeEEEEE
Q 004885 701 AIENYISILD 710 (725)
Q Consensus 701 s~Dg~V~IwD 710 (725)
..|+.|.+||
T Consensus 214 ~~dg~iAiwD 223 (783)
T KOG1008|consen 214 NSDGDIAIWD 223 (783)
T ss_pred cccCceeecc
Confidence 6699999999
No 342
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.13 E-value=0.083 Score=59.21 Aligned_cols=157 Identities=14% Similarity=0.098 Sum_probs=92.8
Q ss_pred eEEEEEcCCCCEEEEE-eCCC----cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC-----------eE
Q 004885 558 VESCHFSPDGKLLATG-GHDK----KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-----------TV 621 (725)
Q Consensus 558 V~~i~fSpdg~~LaSg-s~Dg----~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dg-----------tI 621 (725)
+..+++|||+++||.+ +..| .|+|+|+++++.+....... ....+.|.++++.|+....|. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 4468899999988755 3334 69999999997764321111 122399999988776665433 37
Q ss_pred EEEECCCCCee-eEEEecCCCC--eEEEEEccCCCeEEEEEeCCC---cEEEEECCCC-----eeEEEEecCCCeEEEEE
Q 004885 622 RVWDTENPDYS-LRTFTGHSTT--VMSLDFHPSKEDLLCSCDNNS---EIRYWSINNG-----SCAGVFKCQSGATQMRF 690 (725)
Q Consensus 622 rvWDl~~~~~~-l~~~~~h~~~--V~sl~fsP~g~~llaSgs~Dg---~I~IwDl~t~-----~~v~~~~~~~~V~sv~f 690 (725)
++|.+.++... ...|.+.... ...+..+++++++++...... .|++.|+..+ ...........+....-
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 88888876532 3444443332 578889999998887665433 4888898875 33344443344433332
Q ss_pred ecCCCEEEEEEc---CCeEEEEECCCCe
Q 004885 691 QPRLGRILAAAI---ENYISILDVETQV 715 (725)
Q Consensus 691 spdg~~Lla~s~---Dg~V~IwDl~tg~ 715 (725)
+..+.+++.+.. .+.|...++.+..
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccc
Confidence 333333333322 3567777776653
No 343
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.12 E-value=0.0012 Score=45.14 Aligned_cols=38 Identities=37% Similarity=0.575 Sum_probs=33.5
Q ss_pred eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004885 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (725)
Q Consensus 546 ~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWd 583 (725)
..+..+..|...|.++.|++++.++++++.|+.|++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34566678899999999999999999999999999996
No 344
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.12 E-value=0.0094 Score=67.16 Aligned_cols=144 Identities=16% Similarity=0.190 Sum_probs=91.3
Q ss_pred CCeEEEEEcCCCCEEE-EEeCCCc--EEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCe--EEEEECCCC
Q 004885 556 SKVESCHFSPDGKLLA-TGGHDKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRT--VRVWDTENP 629 (725)
Q Consensus 556 ~~V~~i~fSpdg~~La-Sgs~Dg~--V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs-~Dgt--IrvWDl~~~ 629 (725)
+.-...+|+|||++|+ +...|+. |+++|+...... .+..-.+.-+.-.|+|||++|+-.+ ..|. |.+.|++..
T Consensus 238 g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 238 GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC
Confidence 3345688999999765 4455664 556677665533 3443334444667999999876554 4554 555566655
Q ss_pred CeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc--EEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEc
Q 004885 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI 702 (725)
Q Consensus 630 ~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~--I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~ 702 (725)
. ...+......-....|+|+|+++++....+|. |.+.|+.++..++.+.........+|.+++..++..+.
T Consensus 317 ~--~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 317 Q--VTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred c--eeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEecc
Confidence 5 34444333333478899999977766644455 77778877665666655555566677888777665544
No 345
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.07 E-value=0.00083 Score=47.06 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHHhcCCCC
Q 004885 9 DKMLDVYIYDYLLKRKLHASAKAFQTEGKVS 39 (725)
Q Consensus 9 ~~~L~~yiydyl~k~~~~~~A~~f~~e~~~~ 39 (725)
+..|+..|++||.+.|+.++|++|.+|.++.
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 4579999999999999999999999998764
No 346
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.06 E-value=0.0018 Score=44.16 Aligned_cols=39 Identities=41% Similarity=0.578 Sum_probs=34.4
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004885 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (725)
Q Consensus 587 ~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWD 625 (725)
+.++..+..|...|.++.|++++.++++++.|+.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778899999999999999999999999999996
No 347
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.03 E-value=0.019 Score=64.10 Aligned_cols=135 Identities=13% Similarity=0.058 Sum_probs=88.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecC-CCCeEE
Q 004885 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMS 645 (725)
Q Consensus 567 g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h-~~~V~s 645 (725)
+..+++++.++.+..+|..+++.+..... .....+.. .+..|+.++.|+.|..+|..+++. +-..... .....+
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~-~W~~~~~~~~~~~s 330 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVE-LWSQSDLLHRLLTA 330 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcE-EEcccccCCCcccC
Confidence 45677777899999999999987765432 11112222 466788888999999999998862 2211111 111222
Q ss_pred EEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEE-EEEecCCCEEEEEEcCCeEEEEEC
Q 004885 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQ-MRFQPRLGRILAAAIENYISILDV 711 (725)
Q Consensus 646 l~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~s-v~fspdg~~Lla~s~Dg~V~IwDl 711 (725)
.... +. .++.++.||.|+++|..+|+.+..++. ...+.+ ..+. ++.|++++.||.|+.+++
T Consensus 331 p~v~--~g-~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~--~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 331 PVLY--NG-YLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVVA--DDKLLIQARDGTVYAITR 393 (394)
T ss_pred CEEE--CC-EEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEEE--CCEEEEEeCCceEEEEeC
Confidence 2222 33 455778899999999999999888765 233332 2232 468899999999998875
No 348
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0026 Score=72.02 Aligned_cols=92 Identities=17% Similarity=0.249 Sum_probs=76.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeE-EEEEccCCCeEEEEEeCCCcEEEEECCCCeeE
Q 004885 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676 (725)
Q Consensus 598 ~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~-sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v 676 (725)
-.|.-+.|+|..+.||++..+|.|-++.+.- . .+.++.-+...|+ +++|.|||+ +++.|-.||+|++.|+.++..+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~-q-Rlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNW-Q-RLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEecc-c-eeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCce
Confidence 4577889999999999999999998888873 3 4666665666666 999999987 8889999999999999999888
Q ss_pred EE--EecCCCeEEEEEec
Q 004885 677 GV--FKCQSGATQMRFQP 692 (725)
Q Consensus 677 ~~--~~~~~~V~sv~fsp 692 (725)
.. +.....|.++.|++
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 87 44467788888863
No 349
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.01 E-value=0.015 Score=67.32 Aligned_cols=103 Identities=17% Similarity=0.120 Sum_probs=73.7
Q ss_pred CCCCEEEEEeCCCcEEEEECCC-----CeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCe-------
Q 004885 565 PDGKLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDY------- 631 (725)
Q Consensus 565 pdg~~LaSgs~Dg~V~IWdl~~-----~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-DgtIrvWDl~~~~~------- 631 (725)
++|++...+ +++|.|.|..+ ...+..+. -......|+++||++++++++. +.+|.|.|+.+...
T Consensus 286 kdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 286 KAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred hCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 467766653 67899999987 34554443 3566789999999999877655 88999999987441
Q ss_pred ----eeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC
Q 004885 632 ----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (725)
Q Consensus 632 ----~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t 672 (725)
.+....- .-.-...+|+++|. .+.|.-.|..|..||+..
T Consensus 363 ~~~~vvaevev-GlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 363 PRDAVVAEPEL-GLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccceEEEeecc-CCCcceEEECCCCC-EEEeEeecceeEEEehHH
Confidence 1122221 22334578999986 777888899999999975
No 350
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.00 E-value=0.047 Score=56.22 Aligned_cols=137 Identities=12% Similarity=0.040 Sum_probs=93.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEE
Q 004885 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (725)
Q Consensus 567 g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl 646 (725)
..+++.|++.+.+.-.|..+++.+..-. -...|.+-+.- -+++++.|+..|.+.+.+..++.. ...|.....--...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~-~w~f~~~~~vk~~a 99 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQ-IWNFVILETVKVRA 99 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhh-eeeeeehhhhccce
Confidence 3478899999999999999988775432 12334333322 367899999999999999999873 33333222222233
Q ss_pred EEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCe-EEEEEecCCCEEEEEEcCCeEE
Q 004885 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-TQMRFQPRLGRILAAAIENYIS 707 (725)
Q Consensus 647 ~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V-~sv~fspdg~~Lla~s~Dg~V~ 707 (725)
..++++. ++..++.|+..+..|.++..|+...+..+.+ .+-+..|-...|+++...|.|-
T Consensus 100 ~~d~~~g-lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 100 QCDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVL 160 (354)
T ss_pred EEcCCCc-eEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEE
Confidence 4567776 6778899999999999999999998875543 3445566334555555544443
No 351
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.99 E-value=0.0058 Score=70.15 Aligned_cols=115 Identities=16% Similarity=0.129 Sum_probs=85.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEE
Q 004885 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~-~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~ 635 (725)
.|.--+++..+++|+.|+.-|.|++|+-..+.... ...+-.+.+..+.++++..++|.|+..|.|.|+-+.........
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~ 114 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD 114 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence 34444555578999999999999999977655432 23334556667778888888999999999999988764321111
Q ss_pred -----EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC
Q 004885 636 -----FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (725)
Q Consensus 636 -----~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t 672 (725)
-..|...|++++|++++..+ ++|+..|.|.+-.+..
T Consensus 115 ~~t~~d~~~~~rVTal~Ws~~~~k~-ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 115 YVTPCDKSHKCRVTALEWSKNGMKL-YSGDSQGKVVLTELDS 155 (726)
T ss_pred eeccccccCCceEEEEEecccccEE-eecCCCceEEEEEech
Confidence 12367889999999999855 5999999998887776
No 352
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.95 E-value=0.15 Score=55.01 Aligned_cols=163 Identities=13% Similarity=0.050 Sum_probs=102.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc----C-CCCeEEEEEcCCCCEEEEEeC-----C----CeE
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE----H-TQWITDVRFSPSLSRLATSSA-----D----RTV 621 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~----H-~~~V~~IafsPd~~~Lasgs~-----D----gtI 621 (725)
+.+.++..-..+..|+++. .-+++++.+++..+..+.. . ....+++...|+|.+.++... . ..-
T Consensus 66 ~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G 143 (307)
T COG3386 66 GGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTG 143 (307)
T ss_pred CCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcc
Confidence 3345555554555666664 3467777766555333211 1 245678899999887776544 1 122
Q ss_pred EEEECC-CCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC--C----eeEEEEe-c-CCCeEEEEEec
Q 004885 622 RVWDTE-NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--G----SCAGVFK-C-QSGATQMRFQP 692 (725)
Q Consensus 622 rvWDl~-~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t--~----~~v~~~~-~-~~~V~sv~fsp 692 (725)
+||-+. .+. .++.+..+-..-+.|+|+|+++.++++=+..+.|+-|++.. + +....+. . .+..-.++...
T Consensus 144 ~lyr~~p~g~-~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa 222 (307)
T COG3386 144 SLYRVDPDGG-VVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA 222 (307)
T ss_pred eEEEEcCCCC-EEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC
Confidence 455544 333 46666666667789999999997777766668888888762 1 1111111 1 35567788888
Q ss_pred CCCEEEEEEcCC-eEEEEECCCCeEEEEEeC
Q 004885 693 RLGRILAAAIEN-YISILDVETQVCRLKLQV 722 (725)
Q Consensus 693 dg~~Lla~s~Dg-~V~IwDl~tg~~v~~l~G 722 (725)
+|.+.+++..+| .|.+|+.. |+.+..++-
T Consensus 223 dG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l 252 (307)
T COG3386 223 DGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL 252 (307)
T ss_pred CCCEEEecccCCceEEEECCC-CcEEEEEEC
Confidence 877765555554 89999998 888877754
No 353
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.92 E-value=0.048 Score=49.46 Aligned_cols=101 Identities=16% Similarity=0.153 Sum_probs=70.2
Q ss_pred eEEEEEcC---C-CCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee
Q 004885 600 ITDVRFSP---S-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675 (725)
Q Consensus 600 V~~IafsP---d-~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~ 675 (725)
|+++++.. + ...|++|+.|..||+|+-+. .+..+..+ +.|++++-...+ .|+.+-.+|+|-+|+-. ..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e---~~~Ei~e~-~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~--~R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE---IVAEITET-DKVTSLCSLGGG--RFAYALANGTVGVYDRS--QR 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc---EEEEEecc-cceEEEEEcCCC--EEEEEecCCEEEEEeCc--ce
Confidence 45555544 3 35799999999999998764 55666544 567777776664 47788889999999863 34
Q ss_pred EEEEecCCCeEEEEEecCCC----EEEEEEcCCeEEE
Q 004885 676 AGVFKCQSGATQMRFQPRLG----RILAAAIENYISI 708 (725)
Q Consensus 676 v~~~~~~~~V~sv~fspdg~----~Lla~s~Dg~V~I 708 (725)
+...+....++++++..-.+ .|++|-.+|.|-+
T Consensus 74 lWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 74 LWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 45555556688887654332 6888877887754
No 354
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.84 E-value=0.089 Score=55.31 Aligned_cols=144 Identities=16% Similarity=0.144 Sum_probs=93.0
Q ss_pred CCCEEEEEeCCCcEEEEECCC-CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEE---------
Q 004885 566 DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT--------- 635 (725)
Q Consensus 566 dg~~LaSgs~Dg~V~IWdl~~-~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~--------- 635 (725)
.++.|+.|.++| |+++++.. ....... +...|..+...|+-+.|++-+ |+.+.++++..-......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 578899999888 99999833 3333333 233499999999877776665 599999998764421110
Q ss_pred ----EecCCCCeEEEE--EccCCCeEEEEEeCCCcEEEEECCCC-----eeEEEEecCCCeEEEEEecCCCEEEEEEcCC
Q 004885 636 ----FTGHSTTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINNG-----SCAGVFKCQSGATQMRFQPRLGRILAAAIEN 704 (725)
Q Consensus 636 ----~~~h~~~V~sl~--fsP~g~~llaSgs~Dg~I~IwDl~t~-----~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg 704 (725)
.......+..++ -...+...++.+. ...|.||..... .....+.....+.+++|.. ..++++. .+
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~--~~i~v~~-~~ 157 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLG--NKICVGT-SK 157 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeC--CEEEEEe-CC
Confidence 111223455444 1233444554444 458888877542 4666777788999999994 4565555 45
Q ss_pred eEEEEECCCCeEE
Q 004885 705 YISILDVETQVCR 717 (725)
Q Consensus 705 ~V~IwDl~tg~~v 717 (725)
...+.|+.++...
T Consensus 158 ~f~~idl~~~~~~ 170 (275)
T PF00780_consen 158 GFYLIDLNTGSPS 170 (275)
T ss_pred ceEEEecCCCCce
Confidence 5888999877543
No 355
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.83 E-value=0.12 Score=55.93 Aligned_cols=140 Identities=11% Similarity=0.109 Sum_probs=88.2
Q ss_pred CCEEEEEeC----------CCcEEEEECCCC----eEEEEe--ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004885 567 GKLLATGGH----------DKKAVLWCTESF----TVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (725)
Q Consensus 567 g~~LaSgs~----------Dg~V~IWdl~~~----~~i~~l--~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~ 630 (725)
..+|++|.. .|.|.++++... ..+..+ ....++|++|+-. ++ +|+.+. ++.|.+|++....
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcc
Confidence 357776643 288999999873 122222 2357889998876 33 444444 5889999998877
Q ss_pred -eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC-CeeEEEEec---CCCeEEEEEecCCCEEEEEEcCCe
Q 004885 631 -YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKC---QSGATQMRFQPRLGRILAAAIENY 705 (725)
Q Consensus 631 -~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t-~~~v~~~~~---~~~V~sv~fspdg~~Lla~s~Dg~ 705 (725)
.....+......|.++.... + +++.|+....|.++..+. ...+..+.. ...++++.|-+++..++++..+|.
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~~--~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn 195 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVFK--N-YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN 195 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEET--T-EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE
T ss_pred cchhhheecceEEEEEEeccc--c-EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe
Confidence 33334443444677777663 3 666788777788774443 232333322 455889999866678888888999
Q ss_pred EEEEECC
Q 004885 706 ISILDVE 712 (725)
Q Consensus 706 V~IwDl~ 712 (725)
|.++...
T Consensus 196 l~~l~~~ 202 (321)
T PF03178_consen 196 LFVLRYN 202 (321)
T ss_dssp EEEEEE-
T ss_pred EEEEEEC
Confidence 9999876
No 356
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.81 E-value=0.064 Score=60.79 Aligned_cols=136 Identities=13% Similarity=0.171 Sum_probs=78.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC----------CeeeEEE
Q 004885 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP----------DYSLRTF 636 (725)
Q Consensus 567 g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~----------~~~l~~~ 636 (725)
|.+|+..+.+ .|.+||+.+++.++.+... .|..|.|++++.+++..+.+ ++.|++.+.. ...+..+
T Consensus 117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~ 192 (443)
T PF04053_consen 117 GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELI 192 (443)
T ss_dssp SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEE
T ss_pred CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEE
Confidence 8878777655 8999999999999988743 48999999999999888755 5677665433 0023334
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE 712 (725)
Q Consensus 637 ~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~ 712 (725)
......|.+.+|.-+ .++.+.. . .|+. +-+|..........++.-+.+.+....++....|+.|..+.+.
T Consensus 193 ~E~~~~IkSg~W~~d--~fiYtT~-~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 193 HEISERIKSGCWVED--CFIYTTS-N-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEE-S--SEEEEETT--EEEEE-T-T-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred EEecceeEEEEEEcC--EEEEEcC-C-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 333578999999866 3444433 3 6766 4444433322225677777788866777777788888777654
No 357
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.78 E-value=0.14 Score=55.49 Aligned_cols=155 Identities=8% Similarity=0.046 Sum_probs=96.3
Q ss_pred CEEEEEeCCCcEEEEECC-CCeEEEE----eccCCCCe-EEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee-EEEecC-
Q 004885 568 KLLATGGHDKKAVLWCTE-SFTVKST----LEEHTQWI-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGH- 639 (725)
Q Consensus 568 ~~LaSgs~Dg~V~IWdl~-~~~~i~~----l~~H~~~V-~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l-~~~~~h- 639 (725)
..|.+-|.||++.-..++ .++.... |.....++ ..-++...+..++-.+.+|.|+--|+....... ..+.--
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t 227 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT 227 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence 357777789999888887 3554322 11112222 233344444555557889988888887655211 111100
Q ss_pred ---------CCCeEEEEEccCCCeEEEEEeC--CC-------cEEEEECCCCeeEEEEecCCCeEEEEEecCCC-EEEEE
Q 004885 640 ---------STTVMSLDFHPSKEDLLCSCDN--NS-------EIRYWSINNGSCAGVFKCQSGATQMRFQPRLG-RILAA 700 (725)
Q Consensus 640 ---------~~~V~sl~fsP~g~~llaSgs~--Dg-------~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~-~Lla~ 700 (725)
.+.---+++++..+.+++.-.. ++ .|.+||+.+++.+..+.....+.+|.++.+.. +|++.
T Consensus 228 ~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~ 307 (342)
T PF06433_consen 228 DAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYAL 307 (342)
T ss_dssp HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEE
T ss_pred ccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEE
Confidence 1223346778766656654321 11 58899999999999999877888999998877 44444
Q ss_pred E-cCCeEEEEECCCCeEEEEEeC
Q 004885 701 A-IENYISILDVETQVCRLKLQV 722 (725)
Q Consensus 701 s-~Dg~V~IwDl~tg~~v~~l~G 722 (725)
+ .++.|.|||..+|+.++++++
T Consensus 308 ~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 308 SAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp ETTTTEEEEEETTT--EEEEE--
T ss_pred cCCCCeEEEEeCcCCcEEeehhc
Confidence 4 478999999999999999874
No 358
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.74 E-value=0.054 Score=49.17 Aligned_cols=101 Identities=21% Similarity=0.214 Sum_probs=65.7
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004885 558 VESCHFSP---DG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (725)
Q Consensus 558 V~~i~fSp---dg-~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l 633 (725)
|+++++.. || +.|++|+.|..|+||+-+ ..+..+.. ...|++++-... ..|+.+-.+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl--- 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL--- 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCccee---
Confidence 56666654 33 489999999999999744 56666665 456777766655 678888899999998775432
Q ss_pred EEEecCCCCeEEEEEc---cCCCeEEEEEeCCCcEE
Q 004885 634 RTFTGHSTTVMSLDFH---PSKEDLLCSCDNNSEIR 666 (725)
Q Consensus 634 ~~~~~h~~~V~sl~fs---P~g~~llaSgs~Dg~I~ 666 (725)
-..+. ...++++++. -+|..-|++|-.+|.|-
T Consensus 75 WRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 12221 2235555443 34444566777788764
No 359
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.71 E-value=0.18 Score=58.11 Aligned_cols=152 Identities=16% Similarity=0.121 Sum_probs=92.6
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeccCCCC--eEEEEEcC--CCCEEEEEe---------CCCeEEEEECCCCCeeeE
Q 004885 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--ITDVRFSP--SLSRLATSS---------ADRTVRVWDTENPDYSLR 634 (725)
Q Consensus 568 ~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~--V~~IafsP--d~~~Lasgs---------~DgtIrvWDl~~~~~~l~ 634 (725)
..++.++.|+.|+-+|.++++.+..+...... -..+.-+| .+.+++.++ .++.|..+|..+++. +-
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~-~W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKL-LW 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCce-ee
Confidence 57778888999999999999998877543221 01122222 134555553 367889999998873 33
Q ss_pred EEecC-C-------------------CCe-EEEEEccCCCeEEEEEeCCC------------------cEEEEECCCCee
Q 004885 635 TFTGH-S-------------------TTV-MSLDFHPSKEDLLCSCDNNS------------------EIRYWSINNGSC 675 (725)
Q Consensus 635 ~~~~h-~-------------------~~V-~sl~fsP~g~~llaSgs~Dg------------------~I~IwDl~t~~~ 675 (725)
.+... . ..| ....+++.+..++ .++.++ .|.-+|+++|+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~-vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVY-VGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEE-EECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 32211 1 001 1234454445344 454444 699999999999
Q ss_pred EEEEecC-CCe------EEEEEe----cCCC---EEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 676 AGVFKCQ-SGA------TQMRFQ----PRLG---RILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 676 v~~~~~~-~~V------~sv~fs----pdg~---~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
+..+... ... ....+. -++. .+++++.+|.|..+|+++|+.+-..+
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence 9887641 111 111111 1232 46677779999999999998876553
No 360
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=0.018 Score=64.35 Aligned_cols=143 Identities=15% Similarity=0.162 Sum_probs=98.2
Q ss_pred CCCE-EEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCE-------EEEEeCCCeEEEEECCCCCe-eeEEE
Q 004885 566 DGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-------LATSSADRTVRVWDTENPDY-SLRTF 636 (725)
Q Consensus 566 dg~~-LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~-------Lasgs~DgtIrvWDl~~~~~-~l~~~ 636 (725)
+.++ |.++..-..|+-.|++.|+.+..++-|.. |+-+.+.|+.+. -+.|-.|..|.-||.+-... .+...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 4554 44566667899999999999999987766 888888886432 35566788999999985442 23333
Q ss_pred ecCC----CCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004885 637 TGHS----TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDV 711 (725)
Q Consensus 637 ~~h~----~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl 711 (725)
.+|. ..-.|++-..+| .+|.|+.+|.||+||--.......+++ ..+|..|..+.+|.+|++ .++..+.+.|+
T Consensus 423 q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~-Tc~tyLlLi~t 499 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILA-TCKTYLLLIDT 499 (644)
T ss_pred eccccccccccceeeecCCc--eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEE-ecccEEEEEEE
Confidence 3332 223444444444 678999999999999743333344444 688999999999888764 55677777765
Q ss_pred C
Q 004885 712 E 712 (725)
Q Consensus 712 ~ 712 (725)
.
T Consensus 500 ~ 500 (644)
T KOG2395|consen 500 L 500 (644)
T ss_pred e
Confidence 3
No 361
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.69 E-value=0.64 Score=48.76 Aligned_cols=160 Identities=14% Similarity=0.183 Sum_probs=90.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE--------------eccCCCCeEEEE--EcCCCCEEEEEeCCCeE
Q 004885 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--------------LEEHTQWITDVR--FSPSLSRLATSSADRTV 621 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~--------------l~~H~~~V~~Ia--fsPd~~~Lasgs~DgtI 621 (725)
|..+...++-+.|++-+ |+.|+++++........ .......+..++ -...+...+.....++|
T Consensus 38 I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i 116 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKI 116 (275)
T ss_pred EEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEE
Confidence 89999998877776664 59999999876433321 111223344444 11233344444446688
Q ss_pred EEEECCCC--C--eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-----------------
Q 004885 622 RVWDTENP--D--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----------------- 680 (725)
Q Consensus 622 rvWDl~~~--~--~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~----------------- 680 (725)
.+|..... . ...+.+. ....+.+++|..+ .+|.+.. ....+.|+.++.....+.
T Consensus 117 ~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~---~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~ 191 (275)
T PF00780_consen 117 LIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGN---KICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKP 191 (275)
T ss_pred EEEEEECCcccccceeEEEE-cCCCcEEEEEeCC---EEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCc
Confidence 88887653 1 1334443 3367888999843 4445543 346666666443221110
Q ss_pred -----c------------------CC-C--eEEEEEec-------CCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885 681 -----C------------------QS-G--ATQMRFQP-------RLGRILAAAIENYISILDVETQVCRLKLQVSH 724 (725)
Q Consensus 681 -----~------------------~~-~--V~sv~fsp-------dg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~ 724 (725)
. .+ . -..+.|.. ...||++.. ++.|.||++.++++++++.+++
T Consensus 192 ~~~~~~~~~e~Ll~~~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~~~pyli~~~-~~~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 192 LGIFQLSDNEFLLCYDNIGVFVNKNGEPSRKSTIQWSSAPQSVAYSSPYLIAFS-SNSIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred eEEEEeCCceEEEEecceEEEEcCCCCcCcccEEEcCCchhEEEEECCEEEEEC-CCEEEEEECcCCcEEEEEECCC
Confidence 0 00 0 01222221 124555544 4669999999999999998753
No 362
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.63 E-value=0.06 Score=58.10 Aligned_cols=144 Identities=14% Similarity=0.200 Sum_probs=95.0
Q ss_pred CeEEEEEcCCCCEEEEEeC------C---CcEEEEECC-CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEE
Q 004885 557 KVESCHFSPDGKLLATGGH------D---KKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWD 625 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~------D---g~V~IWdl~-~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-DgtIrvWD 625 (725)
.-+++.+.|+|.+.++... + ..-.||-++ .+..++.+..|-..-+.|+|+||++.|+.+.. .+.|..|+
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~ 191 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYD 191 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence 3567888888887665433 1 112445444 46666667766667789999999988877765 47888887
Q ss_pred CCC--C---C-eeeEEEecCCCCeEEEEEccCCCeEEEEEeCC-CcEEEEECCCCeeEEEEecC-CCeEEEEEe-cCCCE
Q 004885 626 TEN--P---D-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAGVFKCQ-SGATQMRFQ-PRLGR 696 (725)
Q Consensus 626 l~~--~---~-~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D-g~I~IwDl~t~~~v~~~~~~-~~V~sv~fs-pdg~~ 696 (725)
+.. . . .....+..+.+..-.++.+.+|. +.+++..+ +.|.+|+.. ++.+..++.. ..+++++|- |+.+.
T Consensus 192 ~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~ 269 (307)
T COG3386 192 LDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNT 269 (307)
T ss_pred cCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCE
Confidence 762 1 1 11222223446666778888887 44333334 389999999 9999998875 778999985 44555
Q ss_pred EEEEEc
Q 004885 697 ILAAAI 702 (725)
Q Consensus 697 Lla~s~ 702 (725)
|++++.
T Consensus 270 L~iTs~ 275 (307)
T COG3386 270 LYITSA 275 (307)
T ss_pred EEEEec
Confidence 555544
No 363
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.63 E-value=0.06 Score=63.27 Aligned_cols=145 Identities=8% Similarity=0.015 Sum_probs=84.9
Q ss_pred CCeEEEEEcCCCCEEEEEe------CCC--cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---------
Q 004885 556 SKVESCHFSPDGKLLATGG------HDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--------- 618 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs------~Dg--~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D--------- 618 (725)
..+...+++|||+.++..- .|. .|.+++.. +.......+ ...+.-.|+|++..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 3578899999999877665 244 45555542 222222333 237888999998877766532
Q ss_pred ---CeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEE---EECCCCee-E---EEEec--CCCeE
Q 004885 619 ---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY---WSINNGSC-A---GVFKC--QSGAT 686 (725)
Q Consensus 619 ---gtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~I---wDl~t~~~-v---~~~~~--~~~V~ 686 (725)
+.+.+.+++.+. ... ...+.|..+.|+|||..+++.. ++.|++ -....|.. + ..+.. ...+.
T Consensus 427 ~~~gql~~~~vd~ge--~~~--~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~ 500 (591)
T PRK13616 427 PATGQLARTPVDASA--VAS--RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAV 500 (591)
T ss_pred CCCceEEEEeccCch--hhh--ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeecccCCccc
Confidence 223333443332 111 2346799999999999877665 467777 44344431 1 11222 23468
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEE
Q 004885 687 QMRFQPRLGRILAAAIENYISILD 710 (725)
Q Consensus 687 sv~fspdg~~Lla~s~Dg~V~IwD 710 (725)
++.|..++. |+++..++...+|.
T Consensus 501 ~l~W~~~~~-L~V~~~~~~~~v~~ 523 (591)
T PRK13616 501 SLDWRTGDS-LVVGRSDPEHPVWY 523 (591)
T ss_pred cceEecCCE-EEEEecCCCCceEE
Confidence 899999966 45555544333443
No 364
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.62 E-value=0.088 Score=60.65 Aligned_cols=153 Identities=10% Similarity=0.072 Sum_probs=95.5
Q ss_pred EEEcCCCCEEEEEeCCC------------------cEEEEECCCCeEEEEeccCCCCeE------EEEEc----CCCC--
Q 004885 561 CHFSPDGKLLATGGHDK------------------KAVLWCTESFTVKSTLEEHTQWIT------DVRFS----PSLS-- 610 (725)
Q Consensus 561 i~fSpdg~~LaSgs~Dg------------------~V~IWdl~~~~~i~~l~~H~~~V~------~Iafs----Pd~~-- 610 (725)
.++.+.+.+++.++.|+ .|.-+|.++++.+..+..-...+. ...+. -++.
T Consensus 222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~ 301 (488)
T cd00216 222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPV 301 (488)
T ss_pred eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCee
Confidence 34444556777776554 799999999999887642111111 00111 1232
Q ss_pred -EEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEE-----------------EeCCCcEEEEECCC
Q 004885 611 -RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS-----------------CDNNSEIRYWSINN 672 (725)
Q Consensus 611 -~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaS-----------------gs~Dg~I~IwDl~t 672 (725)
.++.++.+|.+...|.++++ .+-..... ...+..+| ..+++. ...+|.|.-+|+.+
T Consensus 302 ~~V~~g~~~G~l~ald~~tG~-~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t 375 (488)
T cd00216 302 PAIVHAPKNGFFYVLDRTTGK-LISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT 375 (488)
T ss_pred EEEEEECCCceEEEEECCCCc-EeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCC
Confidence 57888899999999999998 33332211 11233344 223321 12357899999999
Q ss_pred CeeEEEEecC---------CCe--EEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 673 GSCAGVFKCQ---------SGA--TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 673 ~~~v~~~~~~---------~~V--~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
|+.+...... ... ..+. -.++.|++++.||.|+.+|.++|+.+-+++
T Consensus 376 G~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 376 GKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred CcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 9988777643 111 1222 245688888899999999999999887765
No 365
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.57 E-value=0.061 Score=56.19 Aligned_cols=156 Identities=15% Similarity=0.149 Sum_probs=97.6
Q ss_pred EEEcCCCCEEEEEeCC-----CcEEEEECCC-CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE--------EC
Q 004885 561 CHFSPDGKLLATGGHD-----KKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW--------DT 626 (725)
Q Consensus 561 i~fSpdg~~LaSgs~D-----g~V~IWdl~~-~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvW--------Dl 626 (725)
-+|||||.+|...-.| |.|-|||.+. ...+..+..|.-.-..+.|.+|++.++.+. |-|... ++
T Consensus 119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNl 196 (366)
T COG3490 119 GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNL 196 (366)
T ss_pred cccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccch
Confidence 3689999998876543 6899999875 456677888888888999999999988874 333333 22
Q ss_pred CCCCeeeEEE-------------e--cCCCCeEEEEEccCCCeEEEEEeCCCc-----EEEEECCCCeeEEEEec-----
Q 004885 627 ENPDYSLRTF-------------T--GHSTTVMSLDFHPSKEDLLCSCDNNSE-----IRYWSINNGSCAGVFKC----- 681 (725)
Q Consensus 627 ~~~~~~l~~~-------------~--~h~~~V~sl~fsP~g~~llaSgs~Dg~-----I~IwDl~t~~~v~~~~~----- 681 (725)
++.+..+..+ . -+.-.|..++..++|. +++.|-..|- --|=-...++.+..+..
T Consensus 197 dsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgt-vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~ 275 (366)
T COG3490 197 DSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGT-VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQT 275 (366)
T ss_pred hhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCc-EEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHH
Confidence 2222111111 1 1234578888888877 5555543221 11111123333333332
Q ss_pred ---CCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEE
Q 004885 682 ---QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLK 719 (725)
Q Consensus 682 ---~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~tg~~v~~ 719 (725)
...|-+|+.+.+.++++..+- .+...|||..||.++..
T Consensus 276 ~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 276 AAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred HHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence 234778888877677666655 56789999999987753
No 366
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.52 E-value=0.01 Score=68.11 Aligned_cols=117 Identities=8% Similarity=0.108 Sum_probs=87.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee
Q 004885 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675 (725)
Q Consensus 596 H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~ 675 (725)
|...|.--+++..+++++.|+.-|.+.+|+-..+........+..+.+..++.+++ .+++|+|+..|.|.|+-+..+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~-e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV-EYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecch-hHhhhhhcCCceEEeehhhccCC
Confidence 34455555667788999999999999999988776444444444455566667776 45888888899999998875322
Q ss_pred -----EEEEe--cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004885 676 -----AGVFK--CQSGATQMRFQPRLGRILAAAIENYISILDVET 713 (725)
Q Consensus 676 -----v~~~~--~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~t 713 (725)
+..+. +...|++++|++++..+++|...|.|..-.+.+
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 11111 245699999999999999999999999888876
No 367
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.51 E-value=0.034 Score=61.20 Aligned_cols=153 Identities=16% Similarity=0.162 Sum_probs=89.8
Q ss_pred cCCCCEEEEE---------eCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE
Q 004885 564 SPDGKLLATG---------GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (725)
Q Consensus 564 Spdg~~LaSg---------s~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~ 634 (725)
|||+++++.. +..+.+.|||+++++....... ...+....|+|+++.++-.. ++.|.++++.++.....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 5788876663 2346789999998766544333 56788999999999988876 67899998876642212
Q ss_pred EEec-------C---------CCCeEEEEEccCCCeEEEEEeCCCcEEEEE-----------------------------
Q 004885 635 TFTG-------H---------STTVMSLDFHPSKEDLLCSCDNNSEIRYWS----------------------------- 669 (725)
Q Consensus 635 ~~~~-------h---------~~~V~sl~fsP~g~~llaSgs~Dg~I~IwD----------------------------- 669 (725)
+..+ - -+.-..+-|+|+++++++..-++..|+.+.
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 2222 0 122356889999997776655555444433
Q ss_pred ------CCCCeeEE-EEe-----cCCCeEEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEE
Q 004885 670 ------INNGSCAG-VFK-----CQSGATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRL 718 (725)
Q Consensus 670 ------l~t~~~v~-~~~-----~~~~V~sv~fspdg~~Lla~s~D-----g~V~IwDl~tg~~v~ 718 (725)
+.+++... ... ...-+..+.|.+++..|++.-.+ ..|.++|+.++++..
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~ 224 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRV 224 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEE
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeE
Confidence 32222210 000 01226778899997745554332 357788888875443
No 368
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.49 E-value=0.1 Score=57.40 Aligned_cols=149 Identities=19% Similarity=0.257 Sum_probs=89.4
Q ss_pred CCCCeEEEEEcCCCCEEEE--EeCCC---cEEEEECCCCeEEEEecc-CCCCe---EEEEEc-CCC-CEEEEEeCCCeEE
Q 004885 554 STSKVESCHFSPDGKLLAT--GGHDK---KAVLWCTESFTVKSTLEE-HTQWI---TDVRFS-PSL-SRLATSSADRTVR 622 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaS--gs~Dg---~V~IWdl~~~~~i~~l~~-H~~~V---~~Iafs-Pd~-~~Lasgs~DgtIr 622 (725)
-...+..+.|.++++.|+. ..++. .+.++|..++.+...++. ....| ..+.|. +++ .+|.....||.-+
T Consensus 182 ~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~h 261 (353)
T PF00930_consen 182 QDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRH 261 (353)
T ss_dssp SSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEE
T ss_pred CccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcE
Confidence 3455889999999883333 34433 466778877654433322 22333 355554 554 4555666788655
Q ss_pred EEECCCCCeeeEEEecCCCCeEE-EEEccCCCeEEEEEeCCC----cEEEEECCCCeeEEEEecCCCe-EEEEEecCCCE
Q 004885 623 VWDTENPDYSLRTFTGHSTTVMS-LDFHPSKEDLLCSCDNNS----EIRYWSINNGSCAGVFKCQSGA-TQMRFQPRLGR 696 (725)
Q Consensus 623 vWDl~~~~~~l~~~~~h~~~V~s-l~fsP~g~~llaSgs~Dg----~I~IwDl~t~~~v~~~~~~~~V-~sv~fspdg~~ 696 (725)
||-++........+......|.. +.|+++++.+++++..++ .|+..++..+..+..+.+.... ..+.|+|++++
T Consensus 262 ly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y 341 (353)
T PF00930_consen 262 LYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKY 341 (353)
T ss_dssp EEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSE
T ss_pred EEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCE
Confidence 55444433235566655566744 778999888888887633 5666677733445555554444 49999999998
Q ss_pred EEEEEc
Q 004885 697 ILAAAI 702 (725)
Q Consensus 697 Lla~s~ 702 (725)
++...+
T Consensus 342 ~v~~~s 347 (353)
T PF00930_consen 342 YVDTYS 347 (353)
T ss_dssp EEEEEE
T ss_pred EEEEEc
Confidence 876654
No 369
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.45 E-value=0.13 Score=58.48 Aligned_cols=145 Identities=11% Similarity=0.102 Sum_probs=92.4
Q ss_pred CCeEEEEEcCC----CCEEEEEeCCCcEEEEECCC-----CeEEEEec-cCC--CC--eEEEEEcCCCCEEEEEeCCCeE
Q 004885 556 SKVESCHFSPD----GKLLATGGHDKKAVLWCTES-----FTVKSTLE-EHT--QW--ITDVRFSPSLSRLATSSADRTV 621 (725)
Q Consensus 556 ~~V~~i~fSpd----g~~LaSgs~Dg~V~IWdl~~-----~~~i~~l~-~H~--~~--V~~IafsPd~~~Lasgs~DgtI 621 (725)
..|..+.|.|- ...|++.-+.+.|.||-+.. .+.+..-. +.. .+ --.+.|||....|++-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 45999999984 33566667889999998742 22221111 111 11 2367799999888877666655
Q ss_pred EEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee-----EEEEecCCCeEEEEEecCCCE
Q 004885 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-----AGVFKCQSGATQMRFQPRLGR 696 (725)
Q Consensus 622 rvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~-----v~~~~~~~~V~sv~fspdg~~ 696 (725)
.+++++.....+..-....+.|.|.||..||..++++.+..=.-+|||-..... -..|...+.|.+|.-.-| ..
T Consensus 137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~d-sq 215 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVD-SQ 215 (671)
T ss_pred EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEecc-ce
Confidence 677777655455554556688999999999999888777666778998754322 123333455666554433 33
Q ss_pred EEEEE
Q 004885 697 ILAAA 701 (725)
Q Consensus 697 Lla~s 701 (725)
++++.
T Consensus 216 VAvaT 220 (671)
T PF15390_consen 216 VAVAT 220 (671)
T ss_pred EEEEe
Confidence 44433
No 370
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.34 E-value=0.4 Score=53.97 Aligned_cols=157 Identities=10% Similarity=0.024 Sum_probs=81.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-------ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE-ECC
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPSLSRLATSSADRTVRVW-DTE 627 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l-------~~H~~~V~~IafsPd~~~Lasgs~DgtIrvW-Dl~ 627 (725)
+.|.++.|+.+.+ |++...||++++||+.... ...+ .-....|..+.+..+|-.+++ .++.|.+. +..
T Consensus 81 ~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~ 156 (410)
T PF04841_consen 81 GRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNID 156 (410)
T ss_pred CCEEEEEECCCCe-EEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCcc
Confidence 7899999987555 5566689999999986333 1111 111111222233334433333 23333332 222
Q ss_pred CCCeeeEEE----------ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEE
Q 004885 628 NPDYSLRTF----------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 697 (725)
Q Consensus 628 ~~~~~l~~~----------~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~L 697 (725)
... ..+.+ ..+.....-..++.+.. +.+....++.|.+.+-..... +...+++..|+++|+++++
T Consensus 157 ~~~-~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSpng~~i 231 (410)
T PF04841_consen 157 EPV-KLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSPNGKFI 231 (410)
T ss_pred ccc-hhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECCCCCEE
Confidence 111 11111 00111000022333433 223333345555444332211 3334689999999999999
Q ss_pred EEEEcCCeEEEEECCCCeEEEEEe
Q 004885 698 LAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 698 la~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
+.-..+|.+.|.+..-.+++..+.
T Consensus 232 Al~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 232 ALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred EEEECCCCEEEEECcccceeEEee
Confidence 888889999998876666665554
No 371
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.28 E-value=0.0024 Score=74.67 Aligned_cols=164 Identities=9% Similarity=0.090 Sum_probs=102.5
Q ss_pred EEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC--CeEE-----EEeccCCCCeEEEEEcC---CCCEEEEEeC
Q 004885 549 QLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES--FTVK-----STLEEHTQWITDVRFSP---SLSRLATSSA 617 (725)
Q Consensus 549 ~~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~--~~~i-----~~l~~H~~~V~~IafsP---d~~~Lasgs~ 617 (725)
..+++..+.|-.++|-. +...++ -.-|.+.|||++- |+.. +........+.-|.|+| +..+++.+..
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence 34678888999999954 333333 3446788998753 4332 22233344556666666 6677788888
Q ss_pred CCeEEEEECCCCCeeeEEEecCCCCeEEEE-----------EccCCCeEEEEEeCCCcEEEEECC-----CCeeEEEEec
Q 004885 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLD-----------FHPSKEDLLCSCDNNSEIRYWSIN-----NGSCAGVFKC 681 (725)
Q Consensus 618 DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~-----------fsP~g~~llaSgs~Dg~I~IwDl~-----t~~~v~~~~~ 681 (725)
+++|++..+++.. ...|.+|..++..++ .+|||. +|++++.||.+++|-+. .-.|++.++.
T Consensus 204 ~~~i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi~g~~~~rclhewkp 280 (1283)
T KOG1916|consen 204 GGEIRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIYITGKIVHRCLHEWKP 280 (1283)
T ss_pred CCceeEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeeeeeccccHhhhhccCC
Confidence 9999998877654 244555766655544 578987 77788889988887653 4456666665
Q ss_pred CCCeEEEEEecC---------CC--EEEEEEc-CCeEEEEECCCCeEE
Q 004885 682 QSGATQMRFQPR---------LG--RILAAAI-ENYISILDVETQVCR 717 (725)
Q Consensus 682 ~~~V~sv~fspd---------g~--~Lla~s~-Dg~V~IwDl~tg~~v 717 (725)
+.+-..+||..+ +. ++++++. ...+++|.....+|+
T Consensus 281 hd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 281 HDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 443333444321 11 2344433 467999998877776
No 372
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.15 E-value=0.13 Score=58.65 Aligned_cols=147 Identities=16% Similarity=0.143 Sum_probs=88.2
Q ss_pred CCeEEEEEcCCCCEEE-EEe--CCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCC----CCEEEEEeCCCeEEEEECCC
Q 004885 556 SKVESCHFSPDGKLLA-TGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS----LSRLATSSADRTVRVWDTEN 628 (725)
Q Consensus 556 ~~V~~i~fSpdg~~La-Sgs--~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd----~~~Lasgs~DgtIrvWDl~~ 628 (725)
-+|..++|. ||+.++ +.- ..|.+++=| .+.+..| .-|..+.|.|- ...|+..-..+.|.||-+.-
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 458899998 677444 432 334444322 2334333 45899999983 33566667789999998852
Q ss_pred CC----eeeEEEecCC---CC--eEEEEEccCCCeEEEEEeCCCcEEEEECCC--CeeEEEEecCCCeEEEEEecCCCEE
Q 004885 629 PD----YSLRTFTGHS---TT--VMSLDFHPSKEDLLCSCDNNSEIRYWSINN--GSCAGVFKCQSGATQMRFQPRLGRI 697 (725)
Q Consensus 629 ~~----~~l~~~~~h~---~~--V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t--~~~v~~~~~~~~V~sv~fspdg~~L 697 (725)
.. ..+..-..+. -+ --.+.|||....+.+-...|-.| +++++. ......++..+.|.|.||..||.+|
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV-~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSV-LPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL 170 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeE-eeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence 11 0111111111 11 24578999987444434444333 566653 3444556668889999999999988
Q ss_pred EEEEcC-CeEEEEEC
Q 004885 698 LAAAIE-NYISILDV 711 (725)
Q Consensus 698 la~s~D-g~V~IwDl 711 (725)
+++-.. =.-+|||-
T Consensus 171 VVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDS 185 (671)
T ss_pred EEEeCCeEEEEEecC
Confidence 777543 34677873
No 373
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.11 E-value=0.11 Score=62.27 Aligned_cols=98 Identities=10% Similarity=0.119 Sum_probs=71.4
Q ss_pred EEEEEeCCCcEEEEECCCC--eEEEE-ec--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCe
Q 004885 569 LLATGGHDKKAVLWCTESF--TVKST-LE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV 643 (725)
Q Consensus 569 ~LaSgs~Dg~V~IWdl~~~--~~i~~-l~--~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V 643 (725)
-.++|-.+..|..||.+-. +++.. .+ .......|++-+.+| +||+|+.+|.||+||-.. ......+.+...+|
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g-~~AKT~lp~lG~pI 621 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLG-KRAKTALPGLGDPI 621 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccc-hhhhhcCCCCCCCe
Confidence 4566777889999998753 22211 11 123456777766654 799999999999999543 33556667778999
Q ss_pred EEEEEccCCCeEEEEEeCCCcEEEEEC
Q 004885 644 MSLDFHPSKEDLLCSCDNNSEIRYWSI 670 (725)
Q Consensus 644 ~sl~fsP~g~~llaSgs~Dg~I~IwDl 670 (725)
..|+.+.||+++||||. ..|.+++.
T Consensus 622 ~~iDvt~DGkwilaTc~--tyLlLi~t 646 (794)
T PF08553_consen 622 IGIDVTADGKWILATCK--TYLLLIDT 646 (794)
T ss_pred eEEEecCCCcEEEEeec--ceEEEEEE
Confidence 99999999999998884 67888875
No 374
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.07 E-value=0.52 Score=56.61 Aligned_cols=81 Identities=25% Similarity=0.326 Sum_probs=56.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC----------CCeE--E-EEe--------ccCCCCeEEEEEcCC---
Q 004885 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE----------SFTV--K-STL--------EEHTQWITDVRFSPS--- 608 (725)
Q Consensus 553 ~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~----------~~~~--i-~~l--------~~H~~~V~~IafsPd--- 608 (725)
.-...|..|.++++|++||..|..+. .|..+. .++. . +++ ..+...|..+.|||.
T Consensus 82 ~~~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 82 PPLFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES 160 (717)
T ss_pred CCceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence 34456899999999999999887664 443332 1111 1 111 134567899999995
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeE
Q 004885 609 LSRLATSSADRTVRVWDTENPDYSLR 634 (725)
Q Consensus 609 ~~~Lasgs~DgtIrvWDl~~~~~~l~ 634 (725)
+..|++-..|+++|+||+.....+..
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~~~~p~~ 186 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISDPQHPWQ 186 (717)
T ss_pred CCeEEEEecCCEEEEEecCCCCCCeE
Confidence 57899999999999999986554433
No 375
>PHA02713 hypothetical protein; Provisional
Probab=95.93 E-value=0.15 Score=59.68 Aligned_cols=148 Identities=13% Similarity=0.100 Sum_probs=76.6
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCC-------------------
Q 004885 566 DGKLLATGGHDK-----KAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADR------------------- 619 (725)
Q Consensus 566 dg~~LaSgs~Dg-----~V~IWdl~~~~--~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dg------------------- 619 (725)
++++.+.||.++ +|.+||..+.+ .+..+.........+.+ ++...+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccc
Confidence 678888888764 47889876542 22222111111122222 566667776542
Q ss_pred ----eEEEEECCCCCee-eEEEecCCCCeEEEEEccCCCeEEEEEeCC------CcEEEEECCC-CeeE--EEEecCCCe
Q 004885 620 ----TVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINN-GSCA--GVFKCQSGA 685 (725)
Q Consensus 620 ----tIrvWDl~~~~~~-l~~~~~h~~~V~sl~fsP~g~~llaSgs~D------g~I~IwDl~t-~~~v--~~~~~~~~V 685 (725)
+|..||..+..-. +..+.........+.+ + ..+++.|+.+ ..|..||..+ .+.. ..+......
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~--~-~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~ 505 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH--K-DDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA 505 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccCcEEEE--C-CEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence 4667777765411 1111101111111222 2 3477777643 2467899887 4544 333322222
Q ss_pred EEEEEecCCCEEEEEEcCC--eEEEEECCCCeEEEE
Q 004885 686 TQMRFQPRLGRILAAAIEN--YISILDVETQVCRLK 719 (725)
Q Consensus 686 ~sv~fspdg~~Lla~s~Dg--~V~IwDl~tg~~v~~ 719 (725)
..++.. ++..+++|+.|+ .|..||..+.+-...
T Consensus 506 ~~~~~~-~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 506 LHTILH-DNTIMMLHCYESYMLQDTFNVYTYEWNHI 540 (557)
T ss_pred ceeEEE-CCEEEEEeeecceeehhhcCcccccccch
Confidence 333333 456677777777 789999988754433
No 376
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.93 E-value=3.8 Score=45.82 Aligned_cols=159 Identities=13% Similarity=0.062 Sum_probs=90.8
Q ss_pred eEEEEEcCCCCEEEEEeCC----CcEEEEECCCC----eEEEEeccCCCCe-EEEEEcCCCCEEEEEeC---CCeEEEEE
Q 004885 558 VESCHFSPDGKLLATGGHD----KKAVLWCTESF----TVKSTLEEHTQWI-TDVRFSPSLSRLATSSA---DRTVRVWD 625 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~D----g~V~IWdl~~~----~~i~~l~~H~~~V-~~IafsPd~~~Lasgs~---DgtIrvWD 625 (725)
...+..++|+++|+..+.. ..|++.|+... .....+......+ ..+... .+.+++.... ++.|...+
T Consensus 229 ~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~ 307 (414)
T PF02897_consen 229 FVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVD 307 (414)
T ss_dssp EEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEE
T ss_pred EEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEec
Confidence 6688899999987754332 34777788764 2233333333334 444444 4444444332 45777778
Q ss_pred CCCCCe--eeEEEecCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEE
Q 004885 626 TENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILA 699 (725)
Q Consensus 626 l~~~~~--~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg--~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla 699 (725)
+.+... ....+..+...+.-..+...+.++++....++ .|++||+..+.....+.. .+.|..+...++...+..
T Consensus 308 l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~ 387 (414)
T PF02897_consen 308 LADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRF 387 (414)
T ss_dssp TTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEE
T ss_pred ccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEE
Confidence 887762 23356666665444555556677777776665 488999994555555554 334566665666665544
Q ss_pred EEc----CCeEEEEECCCCeEE
Q 004885 700 AAI----ENYISILDVETQVCR 717 (725)
Q Consensus 700 ~s~----Dg~V~IwDl~tg~~v 717 (725)
..+ -.+|..||+.+++..
T Consensus 388 ~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 388 SYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEETTEEEEEEEEETTTTCEE
T ss_pred EEeCCCCCCEEEEEECCCCCEE
Confidence 433 378999999998653
No 377
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=0.085 Score=63.75 Aligned_cols=140 Identities=11% Similarity=0.054 Sum_probs=89.1
Q ss_pred CeEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeEE-----EEe------ccCCCCeEEEEEcCC-CCEEEEEeCCCeEE
Q 004885 557 KVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVK-----STL------EEHTQWITDVRFSPS-LSRLATSSADRTVR 622 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSg--s~Dg~V~IWdl~~~~~i-----~~l------~~H~~~V~~IafsPd-~~~Lasgs~DgtIr 622 (725)
.|..+...+|+...++. +.+-.|.+||+++.... .-| ........++.|.|. -...+++..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 35555556677754443 44458899998753211 111 222345668889985 34567788899999
Q ss_pred EEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-----CCCeEEEEEecCCCEE
Q 004885 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQPRLGRI 697 (725)
Q Consensus 623 vWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-----~~~V~sv~fspdg~~L 697 (725)
|..+......+..+ .....+++|+|+|.|. -++.|...|++.-|-.. ......+.+ ...|.+|+|-....++
T Consensus 182 V~~~~~~~~~v~s~-p~t~~~Tav~WSprGK-Ql~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSF-PVTNSQTAVLWSPRGK-QLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhccc-CcccceeeEEeccccc-eeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEE
Confidence 98876544223332 2345689999999998 55688888998877654 333333332 3679999998775555
Q ss_pred EE
Q 004885 698 LA 699 (725)
Q Consensus 698 la 699 (725)
++
T Consensus 259 vv 260 (1405)
T KOG3630|consen 259 VV 260 (1405)
T ss_pred EE
Confidence 44
No 378
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.87 E-value=1.2 Score=51.88 Aligned_cols=151 Identities=11% Similarity=0.058 Sum_probs=90.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccCC-CCeEEEEEcC--CCCEEEEEe------CCCeEEEEECCCCCeeeEEEe
Q 004885 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSP--SLSRLATSS------ADRTVRVWDTENPDYSLRTFT 637 (725)
Q Consensus 567 g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~-~~V~~IafsP--d~~~Lasgs------~DgtIrvWDl~~~~~~l~~~~ 637 (725)
+..|+.++.|+.|.-+|.++++.+....... ..-..+.-+| .+..|+++. .++.|..+|+++++. +-.+.
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~-lW~~~ 198 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKL-VWRRY 198 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCce-eEecc
Confidence 3467778889999999999999887654211 0001111122 133455543 268899999988873 22111
Q ss_pred cC-------------------------------CCCe-EEEEEccCCCeEEEEEeC----CC-----------cEEEEEC
Q 004885 638 GH-------------------------------STTV-MSLDFHPSKEDLLCSCDN----NS-----------EIRYWSI 670 (725)
Q Consensus 638 ~h-------------------------------~~~V-~sl~fsP~g~~llaSgs~----Dg-----------~I~IwDl 670 (725)
.- ...| ..+.++|..+.+++-.++ ++ +|.-.|+
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 10 0111 234667765544433222 12 5777899
Q ss_pred CCCeeEEEEec-CCCe---------EEEEEecCCC---EEEEEEcCCeEEEEECCCCeEEE
Q 004885 671 NNGSCAGVFKC-QSGA---------TQMRFQPRLG---RILAAAIENYISILDVETQVCRL 718 (725)
Q Consensus 671 ~t~~~v~~~~~-~~~V---------~sv~fspdg~---~Lla~s~Dg~V~IwDl~tg~~v~ 718 (725)
++|+....|.. +..+ .-+.+..+|+ .++.+..+|.++++|.++|+.+.
T Consensus 279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence 99999988874 2221 2223334665 45567779999999999999873
No 379
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.87 E-value=0.28 Score=57.49 Aligned_cols=126 Identities=10% Similarity=0.099 Sum_probs=82.0
Q ss_pred CceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec-cCCCCeEEEEEcC--CCCEEEEEeCC
Q 004885 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSP--SLSRLATSSAD 618 (725)
Q Consensus 542 ~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~-~H~~~V~~IafsP--d~~~Lasgs~D 618 (725)
...+....++......+.-+.-|.-++..++-+....+.|||.+.+.....-. ...+.|.+++|.. ++..+++.+..
T Consensus 16 ~~~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~ 95 (631)
T PF12234_consen 16 KIEWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFP 95 (631)
T ss_pred eEEEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcC
Confidence 34455555665555566667776656655555555689999998876443222 3467899999964 78899999999
Q ss_pred CeEEEEECC-----CCC---eeeEE--EecCC-CCeEEEEEccCCCeEEEEEeCCCcEEEEEC
Q 004885 619 RTVRVWDTE-----NPD---YSLRT--FTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670 (725)
Q Consensus 619 gtIrvWDl~-----~~~---~~l~~--~~~h~-~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl 670 (725)
..|.+|.-. +.. ..++. +..|+ .+|.+..|.++|. ++ .++ +..+.|+|-
T Consensus 96 ~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-Lv-V~s-GNqlfv~dk 155 (631)
T PF12234_consen 96 HHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LV-VGS-GNQLFVFDK 155 (631)
T ss_pred cEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe-EE-EEe-CCEEEEECC
Confidence 999998542 211 12222 23333 5789999999986 43 333 356888874
No 380
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.74 E-value=0.6 Score=51.70 Aligned_cols=144 Identities=11% Similarity=0.116 Sum_probs=80.3
Q ss_pred CCeEEEEEcCCCCEEEEEe-----------CCC-cEEEEECCC--Ce--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 004885 556 SKVESCHFSPDGKLLATGG-----------HDK-KAVLWCTES--FT--VKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs-----------~Dg-~V~IWdl~~--~~--~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dg 619 (725)
.....|+|.++|+++++.. ..+ .|.+++-.+ ++ ....+.......+.|+|.+++ |++++.+.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 3467899999999777653 223 677776432 32 233444444556889999888 44445454
Q ss_pred eEEEEECCCC-----C--eeeEEEec----CCCCeEEEEEccCCCeEEEEEeC------------------CCcEEEEEC
Q 004885 620 TVRVWDTENP-----D--YSLRTFTG----HSTTVMSLDFHPSKEDLLCSCDN------------------NSEIRYWSI 670 (725)
Q Consensus 620 tIrvWDl~~~-----~--~~l~~~~~----h~~~V~sl~fsP~g~~llaSgs~------------------Dg~I~IwDl 670 (725)
.+++.|.... . ..+..+.. +...+..++|.|+|..+++.++. .+.|.-+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 4445455421 1 11112222 12347789999998744433321 134555565
Q ss_pred CCCeeEEEEecCCCeEEEEEecCCCEEEEEE
Q 004885 671 NNGSCAGVFKCQSGATQMRFQPRLGRILAAA 701 (725)
Q Consensus 671 ~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s 701 (725)
.+++.............++|+++|..+++-.
T Consensus 172 dg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 5544332222233467899999977765533
No 381
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.66 E-value=1.1 Score=48.27 Aligned_cols=161 Identities=12% Similarity=0.183 Sum_probs=85.6
Q ss_pred CceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 004885 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 621 (725)
Q Consensus 542 ~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtI 621 (725)
+.+++.+. ..-.+.+..+..++||+++++++.-..+.-||--...-...-+.-...|..|.|.|++.+.+++ ..+.|
T Consensus 133 G~tW~~~~--~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~ 209 (302)
T PF14870_consen 133 GKTWQAVV--SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQI 209 (302)
T ss_dssp TSSEEEEE---S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEE
T ss_pred CCCeeEcc--cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEE
Confidence 45565443 3445779999999999999988766666678754321122223346889999999997766654 78888
Q ss_pred EEEECCCCCeeeEE----EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec----CCCeEEEEEecC
Q 004885 622 RVWDTENPDYSLRT----FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGATQMRFQPR 693 (725)
Q Consensus 622 rvWDl~~~~~~l~~----~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~----~~~V~sv~fspd 693 (725)
++=+.......... +....-.+.+++|.+++. ++++|+ .|.+ +...+.|+.=...+. ...++.|.|.+.
T Consensus 210 ~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~ 286 (302)
T PF14870_consen 210 QFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNP 286 (302)
T ss_dssp EEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEET
T ss_pred EEccCCCCccccccccCCcccCceeeEEEEecCCCC-EEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCC
Confidence 87772211101111 111223489999998866 665555 5655 556666654444432 445888998765
Q ss_pred CCEEEEEEcCCeEEEE
Q 004885 694 LGRILAAAIENYISIL 709 (725)
Q Consensus 694 g~~Lla~s~Dg~V~Iw 709 (725)
..-++.+.+|.|--|
T Consensus 287 -~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 287 -DKGFVLGQDGVLLRY 301 (302)
T ss_dssp -TEEEEE-STTEEEEE
T ss_pred -CceEEECCCcEEEEe
Confidence 556667888887655
No 382
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.63 E-value=1.4 Score=49.59 Aligned_cols=53 Identities=11% Similarity=0.181 Sum_probs=41.2
Q ss_pred CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeEEEEEecC
Q 004885 640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPR 693 (725)
Q Consensus 640 ~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fspd 693 (725)
.+++..+++||+++ ++|....+|.+.|++.+-.+++..+.. ......|.|+-+
T Consensus 216 ~~~i~~iavSpng~-~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 216 DGPIIKIAVSPNGK-FIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred CCCeEEEEECCCCC-EEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence 36799999999998 566667789999998877777777665 356778888765
No 383
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.61 E-value=0.19 Score=56.25 Aligned_cols=146 Identities=13% Similarity=0.058 Sum_probs=83.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC--------
Q 004885 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-------- 628 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~-------- 628 (725)
.|+++.|+++..-|++|...|.|.||.....+... ..-...-..+.+.+- ...++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 48999999998899999999999999764322111 000001111111110 00111222333322
Q ss_pred CCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---------CCCeEEEEEec-----CC
Q 004885 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---------QSGATQMRFQP-----RL 694 (725)
Q Consensus 629 ~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~---------~~~V~sv~fsp-----dg 694 (725)
+-.+...+....+.|++++.+.-| ++|.|..+|.+.|.|+|....+..-.. ...|+++.|.- |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred ccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 112344555567899999998665 788999999999999998887766432 23588888862 22
Q ss_pred ---CEEEEEEcCCeEEEEECC
Q 004885 695 ---GRILAAAIENYISILDVE 712 (725)
Q Consensus 695 ---~~Lla~s~Dg~V~IwDl~ 712 (725)
-.+++|...|.+.+|.+-
T Consensus 153 ySSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEe
Confidence 257788888999999774
No 384
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.61 E-value=0.023 Score=57.54 Aligned_cols=139 Identities=13% Similarity=0.080 Sum_probs=79.9
Q ss_pred EEEEeCCCcEEEEECCCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEE
Q 004885 570 LATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648 (725)
Q Consensus 570 LaSgs~Dg~V~IWdl~~~~~i~-~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~f 648 (725)
|..-+.|+.|+-++++..+... .-..|.... ....-+..+++|+.+|.|.+|...-.......+..-...|.++
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~---~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~-- 107 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQ---RVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG-- 107 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcce---eecccCceEEeecccceEEEecCCccchHHHhhhcccccceec--
Confidence 4444668888888775432211 111122111 1122356789999999999998873321111111112233322
Q ss_pred ccCCCe--EEEEEeCCCcEEEEECCCCeeEEEEecC--CCeEEEEEecCCCEEEEE--EcCCeEEEEECCC
Q 004885 649 HPSKED--LLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAA--AIENYISILDVET 713 (725)
Q Consensus 649 sP~g~~--llaSgs~Dg~I~IwDl~t~~~v~~~~~~--~~V~sv~fspdg~~Lla~--s~Dg~V~IwDl~t 713 (725)
-|.++. +.|++..||.||.|++.-.+.+....++ ..+........++.+..+ +.|..++.|+++.
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 344444 7888999999999999887776655542 344444455555666666 6677777777654
No 385
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.58 E-value=0.93 Score=47.56 Aligned_cols=143 Identities=13% Similarity=0.075 Sum_probs=86.9
Q ss_pred CeEEEEEcCCCCEEEEEe-CC--CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE-CCCCCee
Q 004885 557 KVESCHFSPDGKLLATGG-HD--KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD-TENPDYS 632 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs-~D--g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWD-l~~~~~~ 632 (725)
.+...+++++++.+|... .+ ..|+++... .....+. -...+..-.|++++...+....+...+++. ...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 588999999999777655 23 345555433 3222221 123778889999977777766666667773 3333312
Q ss_pred eEEEecC--CCCeEEEEEccCCCeEEEEEe--CCCcEEEEECC---CC---e---eEEEEec-CCCeEEEEEecCCCEEE
Q 004885 633 LRTFTGH--STTVMSLDFHPSKEDLLCSCD--NNSEIRYWSIN---NG---S---CAGVFKC-QSGATQMRFQPRLGRIL 698 (725)
Q Consensus 633 l~~~~~h--~~~V~sl~fsP~g~~llaSgs--~Dg~I~IwDl~---t~---~---~v~~~~~-~~~V~sv~fspdg~~Ll 698 (725)
....... .+.|.++.++|||..+.+... .++.|.|--+. .+ . .+..... ...++.+.|.+++..++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 2222211 127999999999998776653 34667766543 22 1 1111111 45789999999977666
Q ss_pred EEEc
Q 004885 699 AAAI 702 (725)
Q Consensus 699 a~s~ 702 (725)
.+..
T Consensus 182 ~~~~ 185 (253)
T PF10647_consen 182 LGRS 185 (253)
T ss_pred EeCC
Confidence 6554
No 386
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.57 E-value=0.16 Score=59.67 Aligned_cols=112 Identities=12% Similarity=0.166 Sum_probs=67.2
Q ss_pred CCeEEEEEcCCCCEEEEEe------CCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC---------
Q 004885 598 QWITDVRFSPSLSRLATSS------ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--------- 662 (725)
Q Consensus 598 ~~V~~IafsPd~~~Lasgs------~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D--------- 662 (725)
..+...+++|++..++... .|..-.||-...+........+ ...+...|+|+|..+.+....+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC--CCCCCceECCCCCceEEEecCcceEEEeccC
Confidence 4678999999998876654 2444444433222212222233 2378899999988665543322
Q ss_pred --CcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEE---EECCCC
Q 004885 663 --SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI---LDVETQ 714 (725)
Q Consensus 663 --g~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~I---wDl~tg 714 (725)
+.|.+.+++.+.... .....|..+.|+|||.+++... ++.|.| -....|
T Consensus 428 ~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G 481 (591)
T PRK13616 428 ATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDG 481 (591)
T ss_pred CCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCC
Confidence 234444444433322 2246799999999999888766 467766 444444
No 387
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.45 E-value=1.5 Score=48.57 Aligned_cols=191 Identities=14% Similarity=0.190 Sum_probs=100.6
Q ss_pred CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (725)
Q Consensus 506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~-~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl 584 (725)
.++|..+..|+.-.+|...-. . .++.-|.... .......++++++.|+-...+..|+..|+
T Consensus 48 ~kllF~s~~dg~~nly~lDL~--------------t----~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL 109 (386)
T PF14583_consen 48 RKLLFASDFDGNRNLYLLDLA--------------T----GEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDL 109 (386)
T ss_dssp -EEEEEE-TTSS-EEEEEETT--------------T-----EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEET
T ss_pred CEEEEEeccCCCcceEEEEcc--------------c----CEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEEC
Confidence 367778888888777732111 1 1222222222 22334667788888877666778999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEc--CCCCEEEEEeC----------------------CCeEEEEECCCCCeeeEEEecCC
Q 004885 585 ESFTVKSTLEEHTQWITDVRFS--PSLSRLATSSA----------------------DRTVRVWDTENPDYSLRTFTGHS 640 (725)
Q Consensus 585 ~~~~~i~~l~~H~~~V~~Iafs--Pd~~~Lasgs~----------------------DgtIrvWDl~~~~~~l~~~~~h~ 640 (725)
++.+....+......+-...|. .++..++.+-. ...|..-|+.++. ...+....
T Consensus 110 ~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~--~~~v~~~~ 187 (386)
T PF14583_consen 110 DTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE--RKVVFEDT 187 (386)
T ss_dssp TT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEES
T ss_pred CcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc--eeEEEecC
Confidence 9987766666666666556664 34555443211 1345556777765 45555566
Q ss_pred CCeEEEEEccCCCeEEEEEeC---CC-cEEEEECCC-CeeEEEEec---CCCeEEEEEecCCCEEEEEEc-----CCeEE
Q 004885 641 TTVMSLDFHPSKEDLLCSCDN---NS-EIRYWSINN-GSCAGVFKC---QSGATQMRFQPRLGRILAAAI-----ENYIS 707 (725)
Q Consensus 641 ~~V~sl~fsP~g~~llaSgs~---Dg-~I~IwDl~t-~~~v~~~~~---~~~V~sv~fspdg~~Lla~s~-----Dg~V~ 707 (725)
..+..+-|+|....+++-|-. +. .-|||-+++ +.-...+.. ...+..=-|.|||..|+.-+. +..|.
T Consensus 188 ~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~ 267 (386)
T PF14583_consen 188 DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIA 267 (386)
T ss_dssp S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEE
T ss_pred ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEE
Confidence 778999999998888887763 22 135665543 222222222 233555578999987765433 45688
Q ss_pred EEECCCCeE
Q 004885 708 ILDVETQVC 716 (725)
Q Consensus 708 IwDl~tg~~ 716 (725)
-+|+.+++.
T Consensus 268 ~~d~~t~~~ 276 (386)
T PF14583_consen 268 GYDPDTGER 276 (386)
T ss_dssp EE-TTT--E
T ss_pred eeCCCCCCc
Confidence 888888753
No 388
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.44 E-value=3.5 Score=50.02 Aligned_cols=155 Identities=9% Similarity=0.057 Sum_probs=93.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCe-------------EEEEEcC--CCCEEEEEeC----------CCe
Q 004885 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI-------------TDVRFSP--SLSRLATSSA----------DRT 620 (725)
Q Consensus 566 dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V-------------~~IafsP--d~~~Lasgs~----------Dgt 620 (725)
++..|+.++.|+.|.-.|.++++.+..+.. .+.| ..+.-.| .+..+++|+. +|.
T Consensus 259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~ 337 (764)
T TIGR03074 259 CARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV 337 (764)
T ss_pred cCCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence 455788888999999999999998877632 2211 1111222 2445666643 688
Q ss_pred EEEEECCCCCeeeEEEecC---------------C-CCe-EEEEEccCCCeEEEEE-----------------eCCCcEE
Q 004885 621 VRVWDTENPDYSLRTFTGH---------------S-TTV-MSLDFHPSKEDLLCSC-----------------DNNSEIR 666 (725)
Q Consensus 621 IrvWDl~~~~~~l~~~~~h---------------~-~~V-~sl~fsP~g~~llaSg-----------------s~Dg~I~ 666 (725)
|+-+|+++++..-+...+. . ..+ ..+++++....+++-. ...+.|.
T Consensus 338 I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slv 417 (764)
T TIGR03074 338 IRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLV 417 (764)
T ss_pred EEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEE
Confidence 9999999988322222110 0 011 2345555544333211 1134577
Q ss_pred EEECCCCeeEEEEec-CCCeE---------EEEEec-CCC---EEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 667 YWSINNGSCAGVFKC-QSGAT---------QMRFQP-RLG---RILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 667 IwDl~t~~~v~~~~~-~~~V~---------sv~fsp-dg~---~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
-.|+++|+.+..+.. +..+. -+.+.. +|+ .++.+..+|.++++|.+||+.+..++
T Consensus 418 ALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 418 ALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred EEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 788899998887764 32221 122332 443 67777889999999999999887653
No 389
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.41 E-value=4.3 Score=42.73 Aligned_cols=169 Identities=16% Similarity=0.155 Sum_probs=102.3
Q ss_pred eeeeEEEecCCCCC-eEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeEEEEeccC-CCCeEEEEEcCCCCEEEEE-eCC
Q 004885 544 TFTEFQLIPASTSK-VESCHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATS-SAD 618 (725)
Q Consensus 544 ~~~~~~~l~~H~~~-V~~i~fSpdg~~LaSgs~Dg--~V~IWdl~~~~~i~~l~~H-~~~V~~IafsPd~~~Lasg-s~D 618 (725)
.++.+..+...... .-.+.|..++.++-+.+.-| .|+.+|+.+++......-. ...-..|+... +.|+-- =.+
T Consensus 32 ~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~ 109 (264)
T PF05096_consen 32 SYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKE 109 (264)
T ss_dssp EEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSS
T ss_pred eeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecC
Confidence 34455555433333 34678867888888887766 7999999998876544321 22223444442 334333 347
Q ss_pred CeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec------CCCeEEEEEec
Q 004885 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------QSGATQMRFQP 692 (725)
Q Consensus 619 gtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~------~~~V~sv~fsp 692 (725)
+...+||..+-+ .+..+.- .+.-+.++ .++..+++| +....|+++|..+.+.+..+.. -..++-+.|.
T Consensus 110 ~~~f~yd~~tl~-~~~~~~y-~~EGWGLt--~dg~~Li~S-DGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i- 183 (264)
T PF05096_consen 110 GTGFVYDPNTLK-KIGTFPY-PGEGWGLT--SDGKRLIMS-DGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI- 183 (264)
T ss_dssp SEEEEEETTTTE-EEEEEE--SSS--EEE--ECSSCEEEE--SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-
T ss_pred CeEEEEccccce-EEEEEec-CCcceEEE--cCCCEEEEE-CCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-
Confidence 899999999876 5666653 34557777 445656644 4466899999998887777764 1235667776
Q ss_pred CCCEEEEEEc-CCeEEEEECCCCeEEEEEe
Q 004885 693 RLGRILAAAI-ENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 693 dg~~Lla~s~-Dg~V~IwDl~tg~~v~~l~ 721 (725)
+ +.|.+--. ...|.+.|..+|+++..+.
T Consensus 184 ~-G~IyANVW~td~I~~Idp~tG~V~~~iD 212 (264)
T PF05096_consen 184 N-GKIYANVWQTDRIVRIDPETGKVVGWID 212 (264)
T ss_dssp T-TEEEEEETTSSEEEEEETTT-BEEEEEE
T ss_pred c-CEEEEEeCCCCeEEEEeCCCCeEEEEEE
Confidence 3 56665544 6789999999999988764
No 390
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.40 E-value=0.56 Score=47.95 Aligned_cols=136 Identities=13% Similarity=0.099 Sum_probs=79.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccC--------CCCeEEEEEcCCCCEEE-EEeCCCeEEEEEC
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH--------TQWITDVRFSPSLSRLA-TSSADRTVRVWDT 626 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H--------~~~V~~IafsPd~~~La-sgs~DgtIrvWDl 626 (725)
...++-..+|+|++++-.-.|-.. ++....+....-+.+| -.--+.++|+.+.+.++ +-+.+-+|.-||.
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~-~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy 187 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGD-DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY 187 (310)
T ss_pred cccccCccCCCCceeeeeeccccc-cccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence 345566778999985433222111 1111122222222233 23335788988766664 4456778888884
Q ss_pred --CCCCe----eeEEEecC---C-CCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecC
Q 004885 627 --ENPDY----SLRTFTGH---S-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPR 693 (725)
Q Consensus 627 --~~~~~----~l~~~~~h---~-~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspd 693 (725)
.++.. .+..++.. . -.--.++.+.+|. +++++-..++|..+|..+|+.+.+++. ...|+++||--.
T Consensus 188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-LYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-EEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 33321 22222210 0 1112344455666 777777789999999999999999987 677999999643
No 391
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.29 E-value=2.1 Score=45.33 Aligned_cols=168 Identities=13% Similarity=0.139 Sum_probs=105.5
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004885 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (725)
Q Consensus 551 l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H-~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~ 629 (725)
+.+-...|.++.|+|+.+.|++......-.||=...|..++++.-. -.....|.|.-++.++++--.+..+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 3455556999999999998888877777777766778888776421 233456778777777777777888888877654
Q ss_pred Cee---------eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe-eEE--EEec--------CCCeEEEE
Q 004885 630 DYS---------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAG--VFKC--------QSGATQMR 689 (725)
Q Consensus 630 ~~~---------l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~-~v~--~~~~--------~~~V~sv~ 689 (725)
... +............++|+|....++++-- -.-+.||.+.... .+. .... -..|.++.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE-r~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE-RNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc-cCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 311 1111122445788999999887775544 4446666554322 111 0000 13477788
Q ss_pred EecCCCEEEEEE-cCCeEEEEECCCCeEEEEE
Q 004885 690 FQPRLGRILAAA-IENYISILDVETQVCRLKL 720 (725)
Q Consensus 690 fspdg~~Lla~s-~Dg~V~IwDl~tg~~v~~l 720 (725)
|++..+.|++-+ .++.|...|+. |.++..+
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~l 270 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLS-GEVIELL 270 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecC-CCeeeeE
Confidence 887666555544 45777777765 3334433
No 392
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.25 E-value=0.57 Score=55.02 Aligned_cols=150 Identities=10% Similarity=0.069 Sum_probs=82.2
Q ss_pred EEEEcCCCCEEEEEeCC------CcEEEEECCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEEC
Q 004885 560 SCHFSPDGKLLATGGHD------KKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDT 626 (725)
Q Consensus 560 ~i~fSpdg~~LaSgs~D------g~V~IWdl~~~~--~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dg-----tIrvWDl 626 (725)
++++. ++.+.++||.| .+|.+||..+.+ .+..+...........+ ++...++|+.|| +|-.||.
T Consensus 327 ~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp 403 (571)
T KOG4441|consen 327 GVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDP 403 (571)
T ss_pred cEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecC
Confidence 34443 56788899998 356777776543 21112211222222222 577888898886 4778888
Q ss_pred CCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC------cEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEE
Q 004885 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS------EIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRIL 698 (725)
Q Consensus 627 ~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg------~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Ll 698 (725)
.+... .................-+..++++|+.++ +|..||..+......-.. ......++.-. +..++
T Consensus 404 ~~~~W--~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~-~~iYv 480 (571)
T KOG4441|consen 404 VTNKW--TPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLN-GKIYV 480 (571)
T ss_pred CCCcc--cccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEEC-CEEEE
Confidence 77652 222112222233333333355777877544 578899888766544332 22233344433 34555
Q ss_pred EEEcCC-----eEEEEECCCCe
Q 004885 699 AAAIEN-----YISILDVETQV 715 (725)
Q Consensus 699 a~s~Dg-----~V~IwDl~tg~ 715 (725)
+|+.|+ +|..||.++.+
T Consensus 481 vGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 481 VGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred ECCccCCCccceEEEEcCCCCc
Confidence 666554 47889887753
No 393
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=95.10 E-value=2.6 Score=49.65 Aligned_cols=163 Identities=17% Similarity=0.200 Sum_probs=91.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE--EEec-cCCC------CeEEEEEcCCCCEEEEEeC-C---CeE
Q 004885 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLE-EHTQ------WITDVRFSPSLSRLATSSA-D---RTV 621 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i--~~l~-~H~~------~V~~IafsPd~~~Lasgs~-D---gtI 621 (725)
.+.|..|.|.++++.+++...+|.|.+||....... ..+. .+.. .|......-...++++.+. + -++
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 567999999999999999999999999999332211 1121 1222 2222221122345544443 2 257
Q ss_pred EEEECCCCCeeeEEEe---cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-------CCeEEEEEe
Q 004885 622 RVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-------SGATQMRFQ 691 (725)
Q Consensus 622 rvWDl~~~~~~l~~~~---~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~-------~~V~sv~fs 691 (725)
+++.+......+..+. -+........|+-..+.++.- .+++|.+|++...+...++... ..+.++.-
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~- 285 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKP- 285 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeec-
Confidence 7888822221222222 222233344444333335544 5789999999988877766532 13444432
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 692 PRLGRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 692 pdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
|...+++. +.++.|++.|+.-..++.+++
T Consensus 286 ~s~nRvLL-s~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 286 PSPNRVLL-SVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred CCCCeEEE-EcCCEEEEEeehhhhhhhhhh
Confidence 22234333 456889999987665555443
No 394
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.01 E-value=1.4 Score=51.27 Aligned_cols=143 Identities=12% Similarity=0.092 Sum_probs=87.0
Q ss_pred cEEEEECCCCeEEEEeccCCCCeE---------EEEEcCCCC---EEEEEeCCCeEEEEECCCCCeeeEE--------Ee
Q 004885 578 KAVLWCTESFTVKSTLEEHTQWIT---------DVRFSPSLS---RLATSSADRTVRVWDTENPDYSLRT--------FT 637 (725)
Q Consensus 578 ~V~IWdl~~~~~i~~l~~H~~~V~---------~IafsPd~~---~Lasgs~DgtIrvWDl~~~~~~l~~--------~~ 637 (725)
+|.-.|+++++....+......+. -+.+..+++ .++.+..+|.+.+.|-++++. +.. +.
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~-i~~~~~~~~~~w~ 350 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL-LSAEPFVDTVNWA 350 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce-eccccccCCcccc
Confidence 677778899998877754222222 222334555 677889999999999998873 311 10
Q ss_pred ---c-CC-CCe----------------------------EEEEEccCCCeEEEEEeC-----------------------
Q 004885 638 ---G-HS-TTV----------------------------MSLDFHPSKEDLLCSCDN----------------------- 661 (725)
Q Consensus 638 ---~-h~-~~V----------------------------~sl~fsP~g~~llaSgs~----------------------- 661 (725)
. .. .++ ..++++|....+++-...
T Consensus 351 ~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~ 430 (527)
T TIGR03075 351 TGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGL 430 (527)
T ss_pred cccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceecccc
Confidence 0 00 000 124566655433322111
Q ss_pred ---------CCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 662 ---------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 662 ---------Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
-|.|.-||+.+++.+..+....+...-.+.-.+..++++..||.++++|.+||+.+-.++
T Consensus 431 ~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~ 499 (527)
T TIGR03075 431 TIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFK 499 (527)
T ss_pred ccCCCCCCCceeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence 245778888888888777653322111122244567777779999999999999988775
No 395
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.00 E-value=0.6 Score=54.86 Aligned_cols=144 Identities=14% Similarity=0.141 Sum_probs=77.0
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCC--eEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCC------eEEEEECCCCCe
Q 004885 566 DGKLLATGGHDK-----KAVLWCTESF--TVKSTLEEHTQWITDVRFSP-SLSRLATSSADR------TVRVWDTENPDY 631 (725)
Q Consensus 566 dg~~LaSgs~Dg-----~V~IWdl~~~--~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~Dg------tIrvWDl~~~~~ 631 (725)
+|.+.|+||.|| +|-.||..+. ..+.... .......... ++...++|+.|+ ++..||..+...
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~---~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W 456 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML---TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW 456 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCCCC---cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce
Confidence 788999999997 4666776542 2222121 1222222222 567777777554 567888877652
Q ss_pred ee-EEEecCCCCeEEEEEccCCCeEEEEEeCCC-----cEEEEECCCCeeEEEEecCCCeEEEEEe-cCCCEEEEEEcC-
Q 004885 632 SL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKCQSGATQMRFQ-PRLGRILAAAIE- 703 (725)
Q Consensus 632 ~l-~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg-----~I~IwDl~t~~~v~~~~~~~~V~sv~fs-pdg~~Lla~s~D- 703 (725)
.. .....-.... .++.- +..+++.|+.|+ +|..||..+.+....-....+...+... -++..+++|+.|
T Consensus 457 ~~~~~M~~~R~~~-g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~ 533 (571)
T KOG4441|consen 457 TLIAPMNTRRSGF-GVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDG 533 (571)
T ss_pred eecCCcccccccc-eEEEE--CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccC
Confidence 11 1111111111 12222 245888888776 3788998877665543222222222222 233556666666
Q ss_pred ----CeEEEEECCCCe
Q 004885 704 ----NYISILDVETQV 715 (725)
Q Consensus 704 ----g~V~IwDl~tg~ 715 (725)
++|..||..+.+
T Consensus 534 ~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 534 NNNLNTVECYDPETDT 549 (571)
T ss_pred ccccceeEEcCCCCCc
Confidence 468888887763
No 396
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.93 E-value=0.092 Score=63.20 Aligned_cols=97 Identities=21% Similarity=0.202 Sum_probs=68.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCC-eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeE
Q 004885 566 DGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM 644 (725)
Q Consensus 566 dg~~LaSgs~Dg~V~IWdl~~~-~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~ 644 (725)
-+-+++.|+..|.|-..|.... .....-+.-.++|++++|+-+|.+++.|-.+|.|.+||+.+++ .++.+..|..+++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k-~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK-ILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc-ceeeeeecCCccc
Confidence 3457888888888888887542 1111112235899999999999999999999999999999977 6777777766655
Q ss_pred EEEE---ccCCCeEEEEEeCCCc
Q 004885 645 SLDF---HPSKEDLLCSCDNNSE 664 (725)
Q Consensus 645 sl~f---sP~g~~llaSgs~Dg~ 664 (725)
.+-+ ..++. .+.+++..|.
T Consensus 177 ~vi~v~~t~~nS-~llt~D~~Gs 198 (1206)
T KOG2079|consen 177 GVIFVGRTSQNS-KLLTSDTGGS 198 (1206)
T ss_pred eEEEEEEeCCCc-EEEEccCCCc
Confidence 5443 33333 4556666664
No 397
>PHA03098 kelch-like protein; Provisional
Probab=94.90 E-value=0.78 Score=53.31 Aligned_cols=142 Identities=8% Similarity=0.003 Sum_probs=69.9
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeE--EEEeccCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEECCCCCee
Q 004885 566 DGKLLATGGHD-----KKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENPDYS 632 (725)
Q Consensus 566 dg~~LaSgs~D-----g~V~IWdl~~~~~--i~~l~~H~~~V~~IafsPd~~~Lasgs~D------gtIrvWDl~~~~~~ 632 (725)
++++++.||.+ ..+.+||..+.+- +..+....... +++. -++..++.|+.+ ..+.+||..+..-
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W- 418 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKW- 418 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCee-
Confidence 67778888765 3577788765331 11111111111 1222 245666666632 3578888876542
Q ss_pred eEEEecCC--CCeEEEEEccCCCeEEEEEeCC--------CcEEEEECCCCeeEEEEe--cCCCeEEEEEecCCCEEEEE
Q 004885 633 LRTFTGHS--TTVMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAA 700 (725)
Q Consensus 633 l~~~~~h~--~~V~sl~fsP~g~~llaSgs~D--------g~I~IwDl~t~~~v~~~~--~~~~V~sv~fspdg~~Lla~ 700 (725)
....... ....+++.. + +.+++.|+.+ ..+.+||..+.+....-. ......+++.. ++..++.|
T Consensus 419 -~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~G 494 (534)
T PHA03098 419 -SKGSPLPISHYGGCAIYH-D-GKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF-NNKIYVVG 494 (534)
T ss_pred -eecCCCCccccCceEEEE-C-CEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE-CCEEEEEc
Confidence 1111100 001122222 3 3466666532 138889998776543321 11111222222 44555666
Q ss_pred EcC-----CeEEEEECCCC
Q 004885 701 AIE-----NYISILDVETQ 714 (725)
Q Consensus 701 s~D-----g~V~IwDl~tg 714 (725)
+.+ +.|.+||.++.
T Consensus 495 G~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 495 GDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCcCCcccceeEEEeCCCC
Confidence 543 47899999876
No 398
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.85 E-value=0.074 Score=63.96 Aligned_cols=101 Identities=12% Similarity=0.154 Sum_probs=70.2
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-C---C
Q 004885 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-Q---S 683 (725)
Q Consensus 608 d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~---~ 683 (725)
-+..++.|+..|.|-..|+...-.....-..-.++|++++|+.+|. +++.|-.+|.|.+||+.+++.++.+.. . .
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 3456788888888888887764322222223457899999999988 777888899999999999988887764 2 3
Q ss_pred CeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004885 684 GATQMRFQPRLGRILAAAIENYISILDV 711 (725)
Q Consensus 684 ~V~sv~fspdg~~Lla~s~Dg~V~IwDl 711 (725)
+|.-+.|..++..++++...|. +|.+
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 3444555556555666655665 4543
No 399
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.73 E-value=0.36 Score=54.35 Aligned_cols=110 Identities=12% Similarity=0.151 Sum_probs=76.0
Q ss_pred eEEEEEcCCCCE-------EEEEeCCCcEEEEECCC-Ce-EEEEeccCC----CCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004885 558 VESCHFSPDGKL-------LATGGHDKKAVLWCTES-FT-VKSTLEEHT----QWITDVRFSPSLSRLATSSADRTVRVW 624 (725)
Q Consensus 558 V~~i~fSpdg~~-------LaSgs~Dg~V~IWdl~~-~~-~i~~l~~H~----~~V~~IafsPd~~~Lasgs~DgtIrvW 624 (725)
|+-+.+.|+.+. -+.|-.|..|+-||.+- +. .+....+|. ....|++-..+ -+|++|+.+|.||+|
T Consensus 378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLY 456 (644)
T KOG2395|consen 378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLY 456 (644)
T ss_pred cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCC-ceEEEeecCCcEEee
Confidence 666666665442 23556688899999763 22 232333332 33455555544 589999999999999
Q ss_pred ECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC
Q 004885 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (725)
Q Consensus 625 Dl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~ 671 (725)
|-- +......+.+...+|..|..+.+|+++|+|| +..+.+.|+.
T Consensus 457 dri-~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t~ 500 (644)
T KOG2395|consen 457 DRI-GRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDTL 500 (644)
T ss_pred hhh-hhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEEe
Confidence 983 3335567788889999999999999998887 4677777764
No 400
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.69 E-value=2.8 Score=44.45 Aligned_cols=149 Identities=12% Similarity=0.203 Sum_probs=92.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE-------e--ccC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004885 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST-------L--EEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~-------l--~~H-~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~ 627 (725)
-..|.|..++.++++--.+..++++.++....+.. + ..+ ......++|+|....|+.+-.-.-++||.+.
T Consensus 131 pE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 131 PETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred hhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 34577777777888888888898888765432211 1 112 5568899999988888888777666666554
Q ss_pred CCC--eeeEEEecCC-------CCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC----------CeEEE
Q 004885 628 NPD--YSLRTFTGHS-------TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS----------GATQM 688 (725)
Q Consensus 628 ~~~--~~l~~~~~h~-------~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~----------~V~sv 688 (725)
... ..+.....+. ..|.++.|++..+.+++-+.+++.|-..|.. |..+..+.... ....|
T Consensus 211 ~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGi 289 (316)
T COG3204 211 QSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGI 289 (316)
T ss_pred cCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCccee
Confidence 322 1111111111 3478889998888899999888888888877 44444443211 13556
Q ss_pred EEecCCCEEEEEEcCCeEEE
Q 004885 689 RFQPRLGRILAAAIENYISI 708 (725)
Q Consensus 689 ~fspdg~~Lla~s~Dg~V~I 708 (725)
+..++|. |+.++.-+-.+.
T Consensus 290 amDd~g~-lYIvSEPnlfy~ 308 (316)
T COG3204 290 AMDDDGN-LYIVSEPNLFYR 308 (316)
T ss_pred EECCCCC-EEEEecCCccee
Confidence 7776644 444454443333
No 401
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.68 E-value=2.9 Score=43.93 Aligned_cols=120 Identities=12% Similarity=-0.005 Sum_probs=80.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCC--eEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee
Q 004885 598 QWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675 (725)
Q Consensus 598 ~~V~~IafsPd~~~Lasgs~Dg--tIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~ 675 (725)
...-.+.|..++.++-+.+.-| .|+.+|+.+++..........-.-..++...+ .++...=.++...+||..+.+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEecCCeEEEEccccceE
Confidence 3345777866777777777655 79999999988333333333333445555533 4555556789999999999999
Q ss_pred EEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 676 AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 676 v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
+.++...+.-..++ .|+..|+.+.....|+++|.++.+.++++.
T Consensus 123 ~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 123 IGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp EEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred EEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEE
Confidence 99998877777777 456788888778899999999887777665
No 402
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.57 E-value=3.9 Score=45.81 Aligned_cols=153 Identities=18% Similarity=0.235 Sum_probs=81.0
Q ss_pred EEEcCCCCEEEEEe--C----CCcEEEEECCCCeEEEEeccCC---CCeEEEEEcCCCCEEEEEeC--------------
Q 004885 561 CHFSPDGKLLATGG--H----DKKAVLWCTESFTVKSTLEEHT---QWITDVRFSPSLSRLATSSA-------------- 617 (725)
Q Consensus 561 i~fSpdg~~LaSgs--~----Dg~V~IWdl~~~~~i~~l~~H~---~~V~~IafsPd~~~Lasgs~-------------- 617 (725)
+..-|+|.+++++- . -|-+.++|-++.+.+..++... ..-+++-|.|..+.++|+..
T Consensus 135 ~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d 214 (461)
T PF05694_consen 135 VHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPED 214 (461)
T ss_dssp EEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTT
T ss_pred eeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhH
Confidence 44456888877752 2 2468888988888887776432 34578888998888888754
Q ss_pred ------CCeEEEEECCCCCeeeEEEecC-CC-CeEEEEEc--cCCCeEEEEEeCCCcEEEEEC-CCCee----EEEEec-
Q 004885 618 ------DRTVRVWDTENPDYSLRTFTGH-ST-TVMSLDFH--PSKEDLLCSCDNNSEIRYWSI-NNGSC----AGVFKC- 681 (725)
Q Consensus 618 ------DgtIrvWDl~~~~~~l~~~~~h-~~-~V~sl~fs--P~g~~llaSgs~Dg~I~IwDl-~t~~~----v~~~~~- 681 (725)
..++.+||+.+.+ .+.++.-- .+ .+..|.|. |+..+=|+.|.-...|..|-- +.++. +..+..
T Consensus 215 ~~~~~yG~~l~vWD~~~r~-~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~ 293 (461)
T PF05694_consen 215 LEAGKYGHSLHVWDWSTRK-LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAK 293 (461)
T ss_dssp HHHH-S--EEEEEETTTTE-EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--E
T ss_pred hhcccccCeEEEEECCCCc-EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCc
Confidence 3589999999987 56665432 22 35567765 555655666655555555533 44432 222211
Q ss_pred -----------------CCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCC
Q 004885 682 -----------------QSGATQMRFQPRLGRILAAAI-ENYISILDVETQ 714 (725)
Q Consensus 682 -----------------~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~tg 714 (725)
..-|+.|..+.|.++|.++.. +|.|+.||+..-
T Consensus 294 ~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 294 KVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp E--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred ccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 123799999999999988887 899999999763
No 403
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.56 E-value=1.3 Score=48.20 Aligned_cols=136 Identities=7% Similarity=0.060 Sum_probs=88.9
Q ss_pred CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCCeeeEEEe-cC--C---
Q 004885 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFT-GH--S--- 640 (725)
Q Consensus 577 g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~----------DgtIrvWDl~~~~~~l~~~~-~h--~--- 640 (725)
+.|+|+|.++++.+..+.. +..-.+.++|+++.+++++. .-.|.+||..+-. +...+. .. .
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~-~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLS-PTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTE-EEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCc-ccceEecCCcchhee
Confidence 4799999999998877753 34455778999998887542 3469999999876 333221 11 1
Q ss_pred -CCeEEEEEccCCCeEEEEEe-CCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC-CCeEE
Q 004885 641 -TTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE-TQVCR 717 (725)
Q Consensus 641 -~~V~sl~fsP~g~~llaSgs-~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~-tg~~v 717 (725)
.....+.++.+++++++.-- =.-.|.|.|+..++.+.++...+.+.-.-+.+ ..+.+.|.||.+..+.+. .|+..
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~--~~F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGN--RGFSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEET--TEEEEEETTSCEEEEEETSTSSEE
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCC--CceEEEecCCceEEEEECCCCCEe
Confidence 12234577888887665432 23469999999999998887644333333333 357778889998888887 45544
No 404
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.54 E-value=0.12 Score=52.50 Aligned_cols=104 Identities=19% Similarity=0.173 Sum_probs=68.1
Q ss_pred cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEE-cCCCCEEEEEeCCCcEEEEECC
Q 004885 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHF-SPDGKLLATGGHDKKAVLWCTE 585 (725)
Q Consensus 507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~f-Spdg~~LaSgs~Dg~V~IWdl~ 585 (725)
.-+.+|+.|+.|.+|.+.-.....+++.. -...|.|+.- -.++.+..+++.|+.|+.|++.
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s------------------~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~ 132 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCS------------------GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIK 132 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhc------------------ccccceeccccccccceeEEeccCCceeeeccc
Confidence 46788999999999976533222211111 1112333322 2255688899999999999999
Q ss_pred CCeEEEEeccCC-CCeEEEEEcCCCCEEEEE--eCCCeEEEEECCC
Q 004885 586 SFTVKSTLEEHT-QWITDVRFSPSLSRLATS--SADRTVRVWDTEN 628 (725)
Q Consensus 586 ~~~~i~~l~~H~-~~V~~IafsPd~~~Lasg--s~DgtIrvWDl~~ 628 (725)
..+.+...-.|. .++........++.|+.+ +.|..++.|++..
T Consensus 133 p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 133 PNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 888887777777 555555555556666666 6677777777754
No 405
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.50 E-value=0.95 Score=53.19 Aligned_cols=111 Identities=10% Similarity=0.070 Sum_probs=69.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEc--cCCCeEEEEEeCCCcEEEEECC----
Q 004885 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH--PSKEDLLCSCDNNSEIRYWSIN---- 671 (725)
Q Consensus 598 ~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fs--P~g~~llaSgs~Dg~I~IwDl~---- 671 (725)
..+.-+.-+.-++..++-+...++.|||.+.+...........+.|.+++|. |++..+++.|- .+.|.+|.-.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf-~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGF-PHHVLLYTQLRYDY 108 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEc-CcEEEEEEccchhh
Confidence 3444455555445445545566899999988763222222456789999986 67776665554 6778887431
Q ss_pred -----CCeeEEEEec----CCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004885 672 -----NGSCAGVFKC----QSGATQMRFQPRLGRILAAAIENYISILDV 711 (725)
Q Consensus 672 -----t~~~v~~~~~----~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl 711 (725)
....+..+.. ..+|.+.+|.++|..++ | .++.+.|+|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV-~-sGNqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVV-G-SGNQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEE-E-eCCEEEEECC
Confidence 1234444432 46799999999964443 3 3567888874
No 406
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.37 E-value=6.7 Score=42.29 Aligned_cols=110 Identities=16% Similarity=0.200 Sum_probs=58.9
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC-C
Q 004885 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-N 672 (725)
Q Consensus 594 ~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~-t 672 (725)
.+-.+.+..+...+++++++++.....+.-||--...- ..........|.++.|.|++. +.+.+ ..|.|++=+.. .
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w-~~~~r~~~~riq~~gf~~~~~-lw~~~-~Gg~~~~s~~~~~ 217 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTW-QPHNRNSSRRIQSMGFSPDGN-LWMLA-RGGQIQFSDDPDD 217 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS--EEEEE-TTTEEEEEE-TTE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccc-eEEccCccceehhceecCCCC-EEEEe-CCcEEEEccCCCC
Confidence 34457789999999999999998777778888764331 222233457899999999987 43333 67888888722 2
Q ss_pred CeeEEE--Ee--c-CCCeEEEEEecCCCEEEEEEcCCeEE
Q 004885 673 GSCAGV--FK--C-QSGATQMRFQPRLGRILAAAIENYIS 707 (725)
Q Consensus 673 ~~~v~~--~~--~-~~~V~sv~fspdg~~Lla~s~Dg~V~ 707 (725)
.+.-.. .. . .-.+..++|.+++...+ ++..|.|.
T Consensus 218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa-~gg~G~l~ 256 (302)
T PF14870_consen 218 GETWSEPIIPIKTNGYGILDLAYRPPNEIWA-VGGSGTLL 256 (302)
T ss_dssp EEEE---B-TTSS--S-EEEEEESSSS-EEE-EESTT-EE
T ss_pred ccccccccCCcccCceeeEEEEecCCCCEEE-EeCCccEE
Confidence 211111 11 1 33489999998855544 55555443
No 407
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.30 E-value=1.2 Score=49.09 Aligned_cols=143 Identities=13% Similarity=0.076 Sum_probs=79.6
Q ss_pred eEEEEEcCCCCEE-EEEeCCC--cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE
Q 004885 558 VESCHFSPDGKLL-ATGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (725)
Q Consensus 558 V~~i~fSpdg~~L-aSgs~Dg--~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~ 634 (725)
-+.=+|.+||+.| +++..|+ .+++.|+.+++....-.+-........++|+++.++-...+..|+..|+++.+ ...
T Consensus 38 F~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e-~~~ 116 (386)
T PF14583_consen 38 FYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE-ERV 116 (386)
T ss_dssp TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---EEE
T ss_pred ecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCc-EEE
Confidence 3344677888754 5555565 56666888877664333222223356678888887766667789999999987 334
Q ss_pred EEecCCCCeEEEEEc--cCCCeEEEEEe---C-------------------CCcEEEEECCCCeeEEEEecCCCeEEEEE
Q 004885 635 TFTGHSTTVMSLDFH--PSKEDLLCSCD---N-------------------NSEIRYWSINNGSCAGVFKCQSGATQMRF 690 (725)
Q Consensus 635 ~~~~h~~~V~sl~fs--P~g~~llaSgs---~-------------------Dg~I~IwDl~t~~~v~~~~~~~~V~sv~f 690 (725)
.+......+-...|. .++. .++.+- . ...|.-.|+.+|+....+.....+..+-|
T Consensus 117 vy~~p~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~f 195 (386)
T PF14583_consen 117 VYEVPDDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQF 195 (386)
T ss_dssp EEE--TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEE
T ss_pred EEECCcccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCccc
Confidence 444455555445554 3344 332221 0 22567778899988888887888999999
Q ss_pred ecCCCEEEEEEc
Q 004885 691 QPRLGRILAAAI 702 (725)
Q Consensus 691 spdg~~Lla~s~ 702 (725)
+|....+++=+.
T Consensus 196 sP~dp~li~fCH 207 (386)
T PF14583_consen 196 SPTDPTLIMFCH 207 (386)
T ss_dssp ETTEEEEEEEEE
T ss_pred CCCCCCEEEEec
Confidence 998776666544
No 408
>PRK10115 protease 2; Provisional
Probab=94.17 E-value=3.3 Score=49.91 Aligned_cols=111 Identities=13% Similarity=0.076 Sum_probs=67.5
Q ss_pred eEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEEC
Q 004885 558 VESCHFSPDGKLLATGGH-----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDT 626 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~-----Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D------gtIrvWDl 626 (725)
+..+.|+||+++|+.+.. ...|++.|+.++..+....... -..++|.+|++.|+....+ ..|.+|++
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 677889999998876532 2368889998776432221111 1468999998876655432 36788888
Q ss_pred CCCCe-eeEEEecCCCCeE-EEEEccCCCeEEEEEe--CCCcEEEEEC
Q 004885 627 ENPDY-SLRTFTGHSTTVM-SLDFHPSKEDLLCSCD--NNSEIRYWSI 670 (725)
Q Consensus 627 ~~~~~-~l~~~~~h~~~V~-sl~fsP~g~~llaSgs--~Dg~I~IwDl 670 (725)
.++.. ....+........ .+..+.++.++++.+. .++.+.+|+.
T Consensus 207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 87721 2333443333333 3333447776665544 3457889985
No 409
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.07 E-value=0.059 Score=63.55 Aligned_cols=120 Identities=18% Similarity=0.245 Sum_probs=73.7
Q ss_pred CCeEEEEEcC---CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEE-----------EcCCCCEEEEEeCCCeE
Q 004885 556 SKVESCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR-----------FSPSLSRLATSSADRTV 621 (725)
Q Consensus 556 ~~V~~i~fSp---dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~Ia-----------fsPd~~~Lasgs~DgtI 621 (725)
..+.-|.|+| +.-++.++..++.|++.+++.... ..+.+|..++++++ .+|||+.|++.+.||.+
T Consensus 181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v 259 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSV 259 (1283)
T ss_pred CCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcc
Confidence 3344455544 556777788888998887754322 34556776666544 57899999999999998
Q ss_pred EEEECCCCC----eeeEEEecCCC-CeEEEEEccC-------CCe--EEEEEeCCCcEEEEECCCCeeE
Q 004885 622 RVWDTENPD----YSLRTFTGHST-TVMSLDFHPS-------KED--LLCSCDNNSEIRYWSINNGSCA 676 (725)
Q Consensus 622 rvWDl~~~~----~~l~~~~~h~~-~V~sl~fsP~-------g~~--llaSgs~Dg~I~IwDl~t~~~v 676 (725)
+.|.+.-.. .|+...+.|.+ +-.|.-|+.. +.+ ++-+.+.+..+++|.....+|+
T Consensus 260 ~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 260 GFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 888764211 25566666663 2222223221 112 2223345567999988877777
No 410
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.06 E-value=0.25 Score=59.98 Aligned_cols=114 Identities=11% Similarity=0.001 Sum_probs=77.4
Q ss_pred CCeEEEEEcCCCCEE--EEEeCCCeEEEEECCCCCeee----EEEe------cCCCCeEEEEEccCCCeEEEEEeCCCcE
Q 004885 598 QWITDVRFSPSLSRL--ATSSADRTVRVWDTENPDYSL----RTFT------GHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (725)
Q Consensus 598 ~~V~~IafsPd~~~L--asgs~DgtIrvWDl~~~~~~l----~~~~------~h~~~V~sl~fsP~g~~llaSgs~Dg~I 665 (725)
.+|..+...+|.... +..+.+..|.+||+++-.... ..+. .....+.++.|.|.-....+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 445556666675543 333445688999997543111 1111 1224467888999866667778889999
Q ss_pred EEEECCCCe-eEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004885 666 RYWSINNGS-CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDV 711 (725)
Q Consensus 666 ~IwDl~t~~-~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl 711 (725)
+|..+.... .+..+.....+++++|+|.|..+++|-..|++.-|..
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P 227 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP 227 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeec
Confidence 998876432 2334455677999999999999999999999988864
No 411
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=93.96 E-value=0.15 Score=39.00 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=27.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl 584 (725)
...|.+++|+|...+||.+..||.|.||.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 456999999999999999999999999998
No 412
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.94 E-value=8.2 Score=40.42 Aligned_cols=115 Identities=15% Similarity=0.097 Sum_probs=68.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCeEE-EEe--ccCCCCeEEEEEcCCCCEEEEEe---CCCeEEEEECCCC
Q 004885 557 KVESCHFSPDGKLLATGGHDKKAVLWC-TESFTVK-STL--EEHTQWITDVRFSPSLSRLATSS---ADRTVRVWDTENP 629 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWd-l~~~~~i-~~l--~~H~~~V~~IafsPd~~~Lasgs---~DgtIrvWDl~~~ 629 (725)
.++.-.|++++...+....+..++++. ..++... ..+ ..-...|..++++|||.+++... .++.|.|--+...
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~ 146 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD 146 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence 577889999988777776666667763 2332221 111 11122899999999999887665 3566666654321
Q ss_pred C--------eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEE-EECC
Q 004885 630 D--------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY-WSIN 671 (725)
Q Consensus 630 ~--------~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~I-wDl~ 671 (725)
. ..+.........+.+++|.+++..+++....++.+.. +.+.
T Consensus 147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~d 197 (253)
T PF10647_consen 147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVD 197 (253)
T ss_pred CCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEcc
Confidence 1 0122222334678999999998744444444444444 4443
No 413
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=93.88 E-value=6.5 Score=48.00 Aligned_cols=157 Identities=18% Similarity=0.222 Sum_probs=93.6
Q ss_pred CCCCCeEEEEEc---C--C--CCEEEEEeCCCcEEEEEC------CC---------CeEEEEeccC---CCCeEEEEEcC
Q 004885 553 ASTSKVESCHFS---P--D--GKLLATGGHDKKAVLWCT------ES---------FTVKSTLEEH---TQWITDVRFSP 607 (725)
Q Consensus 553 ~H~~~V~~i~fS---p--d--g~~LaSgs~Dg~V~IWdl------~~---------~~~i~~l~~H---~~~V~~IafsP 607 (725)
....+|..|+|. . + .++|++- ....+.|+.. .. ..++..+..+ ..+..+|+|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456778889987 2 2 2355554 4556777661 11 1233344322 34678999999
Q ss_pred -CCCEEEEEeCCCeEEEEECCC----CCeeeEEEecCC----------CCeEEEEEccCCCeEEEEEeCCCcEEEEECCC
Q 004885 608 -SLSRLATSSADRTVRVWDTEN----PDYSLRTFTGHS----------TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (725)
Q Consensus 608 -d~~~Lasgs~DgtIrvWDl~~----~~~~l~~~~~h~----------~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t 672 (725)
+...||+.+..|...|||+.. ....+.....+. .....|.|.++...+| .|+ ...+.++|+++
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lL-v~~-r~~l~~~d~~~ 233 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLL-VCN-RSKLMLIDFES 233 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEE-EEc-CCceEEEECCC
Confidence 567899999999999999921 111111111111 2345788988877555 454 46799999998
Q ss_pred CeeEE---EEecCCCeEEEEEecCCC-EEEEEEcCCeEEEEECCC
Q 004885 673 GSCAG---VFKCQSGATQMRFQPRLG-RILAAAIENYISILDVET 713 (725)
Q Consensus 673 ~~~v~---~~~~~~~V~sv~fspdg~-~Lla~s~Dg~V~IwDl~t 713 (725)
..... ..+....|..+.-+++.. ++++- ....|..+|+.+
T Consensus 234 ~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 234 NWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKS 277 (765)
T ss_pred CCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccC
Confidence 75533 222245688888777632 22222 225677777766
No 414
>PHA02790 Kelch-like protein; Provisional
Probab=93.81 E-value=2.5 Score=48.56 Aligned_cols=141 Identities=9% Similarity=0.070 Sum_probs=70.6
Q ss_pred CCCEEEEEeCC--CcEEEEECCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEECCCCCeeeE-EEe
Q 004885 566 DGKLLATGGHD--KKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADR---TVRVWDTENPDYSLR-TFT 637 (725)
Q Consensus 566 dg~~LaSgs~D--g~V~IWdl~~~~--~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dg---tIrvWDl~~~~~~l~-~~~ 637 (725)
++++.++||.+ ..|..||..+.+ .+..+.........+.+ ++...+.|+.++ .+..||.++..-... ...
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~ 395 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY 395 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence 67777888764 357788865432 22122211111112222 566667776543 467788876542110 000
Q ss_pred cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe--cCCCeEEEEEecCCCEEEEEEcC-----CeEEEEE
Q 004885 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIE-----NYISILD 710 (725)
Q Consensus 638 ~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~--~~~~V~sv~fspdg~~Lla~s~D-----g~V~IwD 710 (725)
........+.+ + +.+++.| |.+.+||.++.+....-. ....-.+++.. ++..+++||.+ ..|.+||
T Consensus 396 ~~r~~~~~~~~--~-~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~-~~~IYviGG~~~~~~~~~ve~Yd 468 (480)
T PHA02790 396 YPHYKSCALVF--G-RRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELIIV-DNKLLLIGGFYRGSYIDTIEVYN 468 (480)
T ss_pred CccccceEEEE--C-CEEEEEC---CceEEecCCCCcEeEcCCCCCCccccEEEEE-CCEEEEECCcCCCcccceEEEEE
Confidence 01111112222 2 3466666 457789988776553322 11122233333 44566666643 4688999
Q ss_pred CCCCe
Q 004885 711 VETQV 715 (725)
Q Consensus 711 l~tg~ 715 (725)
.++++
T Consensus 469 ~~~~~ 473 (480)
T PHA02790 469 NRTYS 473 (480)
T ss_pred CCCCe
Confidence 88764
No 415
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.64 E-value=10 Score=40.43 Aligned_cols=149 Identities=9% Similarity=0.063 Sum_probs=93.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE---EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK---STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i---~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~ 632 (725)
+.+.++.|+ +++...+..+.-++|+|+.+...- ..+. ..+--+++.. .|++..++..|.-+-+.|+.++..+
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~ln-t~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLN-TDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceecccc-CCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCc
Confidence 456778885 577888888888999999874432 2222 1233344444 5889999987777889999887754
Q ss_pred eE--EEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe---eEEEEecCCCeEEEEEecCCCEEEEEEcCCeEE
Q 004885 633 LR--TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFKCQSGATQMRFQPRLGRILAAAIENYIS 707 (725)
Q Consensus 633 l~--~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~---~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~ 707 (725)
.. .+.......+.++.+ |++-+ .+..|+-+.|.|+.+.. .+........+.++..+++.-++ +..+..|.
T Consensus 162 ~lagrya~~~~d~~~v~IS--Gn~AY-vA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~--vvy~egvl 236 (370)
T COG5276 162 QLAGRYALPGGDTHDVAIS--GNYAY-VAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYL--VVYDEGVL 236 (370)
T ss_pred eeeeeeccCCCCceeEEEe--cCeEE-EEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEE--EEcccceE
Confidence 33 233333444667776 34344 44457889999998643 33444445578888888873333 33333455
Q ss_pred EEECCCC
Q 004885 708 ILDVETQ 714 (725)
Q Consensus 708 IwDl~tg 714 (725)
+-|..+.
T Consensus 237 ivd~s~~ 243 (370)
T COG5276 237 IVDVSGP 243 (370)
T ss_pred EEecCCC
Confidence 6665544
No 416
>PRK13684 Ycf48-like protein; Provisional
Probab=93.63 E-value=2.9 Score=45.74 Aligned_cols=159 Identities=14% Similarity=0.136 Sum_probs=88.9
Q ss_pred CceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEE-EECCCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 004885 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL-WCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADR 619 (725)
Q Consensus 542 ~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~I-Wdl~~~~~i~-~l~~H~~~V~~IafsPd~~~Lasgs~Dg 619 (725)
+.++..+.. .-.+.+.++.+.+++.+++++. .|.+.. +|- .++.-. ....-...++++.+.++++.++++ ..|
T Consensus 161 G~tW~~~~~--~~~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G 235 (334)
T PRK13684 161 GKNWEALVE--DAAGVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGG 235 (334)
T ss_pred CCCceeCcC--CCcceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCC
Confidence 444544332 2245689999999887766654 565543 222 222111 122335678999999998877665 456
Q ss_pred eEEEEECCCCCeeeEEEec----CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe---c-CCCeEEEEEe
Q 004885 620 TVRVWDTENPDYSLRTFTG----HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---C-QSGATQMRFQ 691 (725)
Q Consensus 620 tIrvWDl~~~~~~l~~~~~----h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~---~-~~~V~sv~fs 691 (725)
.+++=..+.+. ....... ....+.++.|.+++. ++++ +.+|.|. .....++.-.... . ....+.+.|.
T Consensus 236 ~~~~~s~d~G~-sW~~~~~~~~~~~~~l~~v~~~~~~~-~~~~-G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~ 311 (334)
T PRK13684 236 QIRFNDPDDLE-SWSKPIIPEITNGYGYLDLAYRTPGE-IWAG-GGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFL 311 (334)
T ss_pred EEEEccCCCCC-ccccccCCccccccceeeEEEcCCCC-EEEE-cCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEe
Confidence 66432333332 1111111 123578899999876 5544 4466554 4445444332222 1 2357778887
Q ss_pred cCCCEEEEEEcCCeEEEEE
Q 004885 692 PRLGRILAAAIENYISILD 710 (725)
Q Consensus 692 pdg~~Lla~s~Dg~V~IwD 710 (725)
.++ ..++++..|.|-.|+
T Consensus 312 ~~~-~~~~~G~~G~il~~~ 329 (334)
T PRK13684 312 DPE-KGFVLGQRGVLLRYV 329 (334)
T ss_pred CCC-ceEEECCCceEEEec
Confidence 664 456677778887775
No 417
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.51 E-value=13 Score=39.98 Aligned_cols=69 Identities=16% Similarity=0.200 Sum_probs=48.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCC------C-eEEEEecc-----CCCCeEEEEEcCCCC------------EEE
Q 004885 558 VESCHFSPDGKLLATGGHDKKAVLWCTES------F-TVKSTLEE-----HTQWITDVRFSPSLS------------RLA 613 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~------~-~~i~~l~~-----H~~~V~~IafsPd~~------------~La 613 (725)
-..|+|+|.+.+.++...-++..+||... . ..+.++.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 35799999998888888888999999861 1 22333331 134577777775332 367
Q ss_pred EEeCCCeEEEEEC
Q 004885 614 TSSADRTVRVWDT 626 (725)
Q Consensus 614 sgs~DgtIrvWDl 626 (725)
.++.||+|.-|..
T Consensus 105 f~tEdGTisaW~p 117 (336)
T TIGR03118 105 FVTEDGTLSGWAP 117 (336)
T ss_pred EEeCCceEEeecC
Confidence 7889999999985
No 418
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.44 E-value=3.5 Score=42.35 Aligned_cols=121 Identities=10% Similarity=0.081 Sum_probs=79.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEE
Q 004885 597 TQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (725)
Q Consensus 597 ~~~V~~IafsPd~~~Lasgs~----------DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~ 666 (725)
....++-..+|+|+++ .|.. .|.++.|-.... +..+...-.--+.++|+.+.+.++++-+.+-+|.
T Consensus 108 knR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~~h~---v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLAGHQ---VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred hcccccCccCCCCcee-eeeeccccccccccccEEEEeccCCC---ceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence 3456677789999984 3332 244555554321 2333333344577899988888888888888887
Q ss_pred EEE--CCCCe-----eEEEEec-----CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 667 YWS--INNGS-----CAGVFKC-----QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 667 IwD--l~t~~-----~v~~~~~-----~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
-|| ..+|. .+..++. +-..-.++...+|..++++-..++|..+|..+|+.+.+++
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik 250 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK 250 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE
Confidence 787 44443 3333332 1123445667788888888888999999999999998875
No 419
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.34 E-value=11 Score=45.83 Aligned_cols=153 Identities=15% Similarity=0.162 Sum_probs=93.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccCCC--------CeEEEEEcC----------------CCCEEEEEeCCCeEE
Q 004885 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ--------WITDVRFSP----------------SLSRLATSSADRTVR 622 (725)
Q Consensus 567 g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~--------~V~~IafsP----------------d~~~Lasgs~DgtIr 622 (725)
+..|+.|+.++.|+-.|..+++.+..+..... .+..+.+.. .+.+|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 45677778888999999999998887753221 122233321 345888899999999
Q ss_pred EEECCCCCeeeEEEecCCCCeE-------------EEEEcc--CCCeEEEEEeC----------CCcEEEEECCCCeeEE
Q 004885 623 VWDTENPDYSLRTFTGHSTTVM-------------SLDFHP--SKEDLLCSCDN----------NSEIRYWSINNGSCAG 677 (725)
Q Consensus 623 vWDl~~~~~~l~~~~~h~~~V~-------------sl~fsP--~g~~llaSgs~----------Dg~I~IwDl~t~~~v~ 677 (725)
-.|.++++. +..|. ..+.|. .+.-.| .+..++ .++. +|.|+-+|+++|+.+.
T Consensus 274 ALDA~TGk~-~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VI-vG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADTGKL-CEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVV-IGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCCCCE-EEEec-CCCceeeecccCcCCCcccccccCCEEECCEEE-EEecccccccccCCCcEEEEEECCCCcEee
Confidence 999999984 33332 111110 011111 123233 4432 5889999999999988
Q ss_pred EEecC----------C--------C-eEEEEEecCCCEEEEEEc------------------CCeEEEEECCCCeEEEEE
Q 004885 678 VFKCQ----------S--------G-ATQMRFQPRLGRILAAAI------------------ENYISILDVETQVCRLKL 720 (725)
Q Consensus 678 ~~~~~----------~--------~-V~sv~fspdg~~Lla~s~------------------Dg~V~IwDl~tg~~v~~l 720 (725)
.+... + . ...+++++..+.++.... .+.|.-.|++||+.+-.+
T Consensus 351 ~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~ 430 (764)
T TIGR03074 351 AWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVF 430 (764)
T ss_pred EEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEe
Confidence 77531 0 0 133455665555444221 256888899999888777
Q ss_pred eC
Q 004885 721 QV 722 (725)
Q Consensus 721 ~G 722 (725)
+-
T Consensus 431 Q~ 432 (764)
T TIGR03074 431 QT 432 (764)
T ss_pred cc
Confidence 64
No 420
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.27 E-value=6.6 Score=47.72 Aligned_cols=149 Identities=13% Similarity=0.112 Sum_probs=95.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC--CCeee
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--PDYSL 633 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~--~~~~l 633 (725)
+.|.++..- +|++||.- ...|++|++.+.+.++.-..|..++..+...-.++.+++|.--++|.+.-.+. +....
T Consensus 830 Gav~aL~~f-ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~e 906 (1096)
T KOG1897|consen 830 GAVYALVEF-NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEE 906 (1096)
T ss_pred cceeehhhh-CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEE
Confidence 445554432 57766654 56899999988888887788899999999999999999999888776655443 33333
Q ss_pred EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC-------------------CeeEEEEecCCCeEEE--EEec
Q 004885 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------------------GSCAGVFKCQSGATQM--RFQP 692 (725)
Q Consensus 634 ~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t-------------------~~~v~~~~~~~~V~sv--~fsp 692 (725)
..-..+..+++++.+-.+.. ++.+..+|.+.+.-.++ |+.+..|.+..-|.++ ...|
T Consensus 907 vArD~~p~Wmtaveil~~d~--ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~~~ 984 (1096)
T KOG1897|consen 907 VARDYNPNWMTAVEILDDDT--YLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRHGSLVMQLGDSMIP 984 (1096)
T ss_pred eehhhCccceeeEEEecCce--EEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeeecceEeeccccccC
Confidence 33345667788888766543 33455567776664432 1223333332223331 2244
Q ss_pred CCCEEEEEEcCCeEEEE
Q 004885 693 RLGRILAAAIENYISIL 709 (725)
Q Consensus 693 dg~~Lla~s~Dg~V~Iw 709 (725)
-+..++.|..+|.|-+.
T Consensus 985 ~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen 985 LEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred CCCcEEEEEccceEEEE
Confidence 45568888888887654
No 421
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.16 E-value=2.3 Score=48.01 Aligned_cols=143 Identities=15% Similarity=0.205 Sum_probs=90.3
Q ss_pred CCCEEE-EEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCC-------EEEEEeCCCeEEEEECCCCCeeeEEEe
Q 004885 566 DGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-------RLATSSADRTVRVWDTENPDYSLRTFT 637 (725)
Q Consensus 566 dg~~La-Sgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~-------~Lasgs~DgtIrvWDl~~~~~~l~~~~ 637 (725)
|..+|+ .|+...+++-.|++-|+.+..+.-|... -|.|.|..+ .-++|-.+..|.-.|.+-....+...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~- 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV- 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee-
Confidence 555544 5666778999999999999999877654 567777432 23455556666666766443222221
Q ss_pred cCCCCeEEEEEccC---CCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885 638 GHSTTVMSLDFHPS---KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVE 712 (725)
Q Consensus 638 ~h~~~V~sl~fsP~---g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~ 712 (725)
.....++.-.|+.- ..-+++.++..|.|++||--.-.....+.. ...|..|....+|.++++. +...|.+.|++
T Consensus 555 esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaT-Ck~yllL~d~~ 632 (776)
T COG5167 555 ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILAT-CKNYLLLTDVP 632 (776)
T ss_pred eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEe-ecceEEEEecc
Confidence 11122333333321 122677889999999999654333333443 5779999999998887654 45778888875
No 422
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.11 E-value=2.8 Score=44.20 Aligned_cols=143 Identities=13% Similarity=0.112 Sum_probs=89.8
Q ss_pred eEEEEEcCCCC-EEEEEeCCCc-EEEEECCCCeEEEEeccCCCC--eEEEEEcCCCCEEEEEeCC-----CeEEEEECCC
Q 004885 558 VESCHFSPDGK-LLATGGHDKK-AVLWCTESFTVKSTLEEHTQW--ITDVRFSPSLSRLATSSAD-----RTVRVWDTEN 628 (725)
Q Consensus 558 V~~i~fSpdg~-~LaSgs~Dg~-V~IWdl~~~~~i~~l~~H~~~--V~~IafsPd~~~Lasgs~D-----gtIrvWDl~~ 628 (725)
...|+|+|... -++.+-.-|+ ..++|........++...++. .-.=.|+||+.+|+..-.| |.|-|||.+.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 34577888443 4555655554 467888776544443221111 1122599999999877554 6899999997
Q ss_pred CCeeeEEEecCCCCeEEEEEccCCCeEEEEEe------C-----------CCcEEEEECCCCeeEEEEec-----CCCeE
Q 004885 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD------N-----------NSEIRYWSINNGSCAGVFKC-----QSGAT 686 (725)
Q Consensus 629 ~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs------~-----------Dg~I~IwDl~t~~~v~~~~~-----~~~V~ 686 (725)
+-..+..+..|.-.-..+.|.+||+.++++.+ . .-++.+.|..+|..+.+... .-.|.
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiR 229 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIR 229 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhccee
Confidence 76677888888888899999999996655433 0 01233444445555544332 34577
Q ss_pred EEEEecCCCEEEEE
Q 004885 687 QMRFQPRLGRILAA 700 (725)
Q Consensus 687 sv~fspdg~~Lla~ 700 (725)
.++..+||..++.+
T Consensus 230 Hld~g~dgtvwfgc 243 (366)
T COG3490 230 HLDIGRDGTVWFGC 243 (366)
T ss_pred eeeeCCCCcEEEEE
Confidence 78888886555444
No 423
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=93.10 E-value=6.5 Score=43.62 Aligned_cols=144 Identities=14% Similarity=0.149 Sum_probs=89.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcC----CCCE--EEEEe-CC---CeEEEEECCCCCeeeEE
Q 004885 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP----SLSR--LATSS-AD---RTVRVWDTENPDYSLRT 635 (725)
Q Consensus 566 dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsP----d~~~--Lasgs-~D---gtIrvWDl~~~~~~l~~ 635 (725)
...+|+....++-+.+||+.. +.+..+. .+.++.|+... +++. |+.++ .+ .+|++|.+......+..
T Consensus 67 ~kSlIigTdK~~GL~VYdL~G-k~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~ 143 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDG-KELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD 143 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred ccceEEEEeCCCCEEEEcCCC-cEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence 445777778888999999864 4555553 23444444322 3332 34443 32 47999987642223433
Q ss_pred Eec-------CCCCeEEEEEc--c-CCCeEEEEEeCCCcEEEEECC---CC----eeEEEEecCCCeEEEEEecCCCEEE
Q 004885 636 FTG-------HSTTVMSLDFH--P-SKEDLLCSCDNNSEIRYWSIN---NG----SCAGVFKCQSGATQMRFQPRLGRIL 698 (725)
Q Consensus 636 ~~~-------h~~~V~sl~fs--P-~g~~llaSgs~Dg~I~IwDl~---t~----~~v~~~~~~~~V~sv~fspdg~~Ll 698 (725)
+.. ....++.+|+- + +|..+++....+|.+.-|-+. .+ +.++.|.....+..|..+...++|+
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLY 223 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEE
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEE
Confidence 321 12346777763 3 456566677788988877664 33 5688888878899999999999999
Q ss_pred EEEcCCeEEEEECC
Q 004885 699 AAAIENYISILDVE 712 (725)
Q Consensus 699 a~s~Dg~V~IwDl~ 712 (725)
++-.+.-|.-|+++
T Consensus 224 vgEE~~GIW~y~Ae 237 (381)
T PF02333_consen 224 VGEEDVGIWRYDAE 237 (381)
T ss_dssp EEETTTEEEEEESS
T ss_pred EecCccEEEEEecC
Confidence 99999889999886
No 424
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.98 E-value=3.1 Score=42.32 Aligned_cols=139 Identities=16% Similarity=0.239 Sum_probs=83.1
Q ss_pred CEEEEEeCCCcEEEEECCC--CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---C---eEEEE---ECC-CCCeeeE-
Q 004885 568 KLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---R---TVRVW---DTE-NPDYSLR- 634 (725)
Q Consensus 568 ~~LaSgs~Dg~V~IWdl~~--~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D---g---tIrvW---Dl~-~~~~~l~- 634 (725)
+.|+.+...++|.+|++.. ...+..|.. -+.|..+.++..|++|+|--.+ . .+|+| +.. ....++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 4444445567899999873 445566654 4789999999999999997432 2 56664 222 1111111
Q ss_pred EEec---------------------CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee-E-----EEEe-----c-
Q 004885 635 TFTG---------------------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-A-----GVFK-----C- 681 (725)
Q Consensus 635 ~~~~---------------------h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~-v-----~~~~-----~- 681 (725)
.+.| -...+.+++-.|...++++.+ ++.+.+|.+..... . ..|. +
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~ 185 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHI 185 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEEEecccccEEechhhhhhee
Confidence 1112 234577888888766677554 46888998764333 1 1121 1
Q ss_pred -CCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885 682 -QSGATQMRFQPRLGRILAAAIENYISILDVE 712 (725)
Q Consensus 682 -~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~ 712 (725)
.-.+..+++..+ +++..++..++|+.+.
T Consensus 186 ~~~~p~~v~ic~~---yiA~~s~~ev~Vlkl~ 214 (215)
T PF14761_consen 186 DNFKPTQVAICEG---YIAVMSDLEVLVLKLE 214 (215)
T ss_pred cCceEEEEEEEee---EEEEecCCEEEEEEEe
Confidence 222566777643 4555667778887654
No 425
>PHA02713 hypothetical protein; Provisional
Probab=92.80 E-value=1.8 Score=50.72 Aligned_cols=140 Identities=8% Similarity=0.052 Sum_probs=69.9
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCeE--EEEeccCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCCee
Q 004885 566 DGKLLATGGHD------KKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTENPDYS 632 (725)
Q Consensus 566 dg~~LaSgs~D------g~V~IWdl~~~~~--i~~l~~H~~~V~~IafsPd~~~Lasgs~Dg-----tIrvWDl~~~~~~ 632 (725)
+++++++||.+ ..|..||..+..- +..+.........+.+ +++..+.|+.++ ++.+||..+..-
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W- 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKW- 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeE-
Confidence 67777777754 3477888765432 1111111111222222 566677777653 478899886541
Q ss_pred eEEEec---CCCCeEEEEEccCCCeEEEEEeCCC-----------------------cEEEEECCCCeeEEEEec--CCC
Q 004885 633 LRTFTG---HSTTVMSLDFHPSKEDLLCSCDNNS-----------------------EIRYWSINNGSCAGVFKC--QSG 684 (725)
Q Consensus 633 l~~~~~---h~~~V~sl~fsP~g~~llaSgs~Dg-----------------------~I~IwDl~t~~~v~~~~~--~~~ 684 (725)
..... .......+.+ + +.+++.|+.++ .|..||..+.+....-.. ...
T Consensus 380 -~~~~~mp~~r~~~~~~~~--~-g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~ 455 (557)
T PHA02713 380 -KMLPDMPIALSSYGMCVL--D-QYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI 455 (557)
T ss_pred -EECCCCCcccccccEEEE--C-CEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc
Confidence 11111 1111112222 3 44777776542 477788877655432221 111
Q ss_pred eEEEEEecCCCEEEEEEcC------CeEEEEECCC
Q 004885 685 ATQMRFQPRLGRILAAAIE------NYISILDVET 713 (725)
Q Consensus 685 V~sv~fspdg~~Lla~s~D------g~V~IwDl~t 713 (725)
-.+++. -++..+++|+.+ ..|..||.++
T Consensus 456 ~~~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 456 RPGVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred cCcEEE-ECCEEEEEeCCCCCCccceeEEEecCCC
Confidence 122332 234555556543 2477899886
No 426
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.70 E-value=3.3 Score=46.38 Aligned_cols=146 Identities=10% Similarity=0.125 Sum_probs=76.3
Q ss_pred CeEEEEEcCCCCEEEEEeC--------------------CCcEEEEECCCCeEEEEeccCC--CCeEEEEEcC--CCCEE
Q 004885 557 KVESCHFSPDGKLLATGGH--------------------DKKAVLWCTESFTVKSTLEEHT--QWITDVRFSP--SLSRL 612 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~--------------------Dg~V~IWdl~~~~~i~~l~~H~--~~V~~IafsP--d~~~L 612 (725)
.-+++-|.|..+.++|... ..++.+||+.+.+.+.++.--. ..+..|+|.. +..+-
T Consensus 182 ~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~g 261 (461)
T PF05694_consen 182 FGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYG 261 (461)
T ss_dssp ----EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EE
T ss_pred CCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccce
Confidence 3467778887777777642 4589999999999998875322 3456777754 44443
Q ss_pred EE-EeCCCeEEEEEC-CCCCe---eeEEEec-----------------CCCCeEEEEEccCCCeEEEEEeCCCcEEEEEC
Q 004885 613 AT-SSADRTVRVWDT-ENPDY---SLRTFTG-----------------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670 (725)
Q Consensus 613 as-gs~DgtIrvWDl-~~~~~---~l~~~~~-----------------h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl 670 (725)
++ +.-..+|..|-- +.+.. .+..+.. -..-|+.|.++.|.++|++++=.+|.||.||+
T Consensus 262 Fvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDI 341 (461)
T PF05694_consen 262 FVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDI 341 (461)
T ss_dssp EEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-
T ss_pred EEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEec
Confidence 33 334555554433 33221 1111111 12457999999999999999999999999999
Q ss_pred CCC---eeEEEEec-----------------CCCeEEEEEecCCCEEEEEEc
Q 004885 671 NNG---SCAGVFKC-----------------QSGATQMRFQPRLGRILAAAI 702 (725)
Q Consensus 671 ~t~---~~v~~~~~-----------------~~~V~sv~fspdg~~Lla~s~ 702 (725)
... +.+..+.. .++..-|..|-||++|+++.+
T Consensus 342 SDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 342 SDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred CCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 753 33333321 123466888999999888765
No 427
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.19 E-value=1.1 Score=50.31 Aligned_cols=86 Identities=12% Similarity=0.149 Sum_probs=59.1
Q ss_pred EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-C-CCeEEEEE-ecC---------------CCEE
Q 004885 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-Q-SGATQMRF-QPR---------------LGRI 697 (725)
Q Consensus 636 ~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~-~~V~sv~f-spd---------------g~~L 697 (725)
+......+.+|+.+|++. +.++.+.-|.|.++|+.++..++.+++ . ..+.=+.. ... ...+
T Consensus 303 l~D~~R~~~~i~~sP~~~-laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGR-LAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred eccCCceEEEEEECCCCC-EEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence 334445689999999977 677777789999999999999988886 1 11111111 111 1122
Q ss_pred E--EEEcCCeEEEEECCCCeEEEEEeC
Q 004885 698 L--AAAIENYISILDVETQVCRLKLQV 722 (725)
Q Consensus 698 l--a~s~Dg~V~IwDl~tg~~v~~l~G 722 (725)
+ -+-.-|.|.||++++|..+..+.-
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 2 334479999999999999988763
No 428
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.18 E-value=4.2 Score=48.49 Aligned_cols=112 Identities=15% Similarity=0.139 Sum_probs=75.0
Q ss_pred eEEEEEcC--CCCEEEEEeCCCcEEEEECCC-------C----e---------EEEEeccCCCCeEEEEEc--CCCCEEE
Q 004885 558 VESCHFSP--DGKLLATGGHDKKAVLWCTES-------F----T---------VKSTLEEHTQWITDVRFS--PSLSRLA 613 (725)
Q Consensus 558 V~~i~fSp--dg~~LaSgs~Dg~V~IWdl~~-------~----~---------~i~~l~~H~~~V~~Iafs--Pd~~~La 613 (725)
|+-|.... +...|+.|..||.|.+|.+++ . . +...+. -...+++++++ ...++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 56555544 455899999999999997631 0 0 111222 24578999998 7788899
Q ss_pred EEeCCCeEEEEECCCC--CeeeEEEecCCCCeEEEEEccCC-----CeEEEEEeCCCcEEEEEC
Q 004885 614 TSSADRTVRVWDTENP--DYSLRTFTGHSTTVMSLDFHPSK-----EDLLCSCDNNSEIRYWSI 670 (725)
Q Consensus 614 sgs~DgtIrvWDl~~~--~~~l~~~~~h~~~V~sl~fsP~g-----~~llaSgs~Dg~I~IwDl 670 (725)
+++....|.||-.... ......-..|...|.+|+|-++. ...+++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 9988888888755432 11111122355678999998764 236778888999999888
No 429
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.13 E-value=0.44 Score=36.49 Aligned_cols=35 Identities=11% Similarity=0.110 Sum_probs=30.3
Q ss_pred CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEE
Q 004885 682 QSGATQMRFQPRLGRILAAAIENYISILDVETQVCR 717 (725)
Q Consensus 682 ~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v 717 (725)
...|..++|+|....|+.+..||.|.||.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 467999999999999999999999999999 55443
No 430
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=91.93 E-value=9.7 Score=46.54 Aligned_cols=125 Identities=10% Similarity=0.084 Sum_probs=79.6
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-----eEEEEeccCCC----------CeEEEEEcCCCCEEEEEeCC
Q 004885 555 TSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-----TVKSTLEEHTQ----------WITDVRFSPSLSRLATSSAD 618 (725)
Q Consensus 555 ~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~-----~~i~~l~~H~~----------~V~~IafsPd~~~Lasgs~D 618 (725)
.....+++|+| +.+.||+....|...||++... ..+.....+.+ .-..|.|.++...|++++ .
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r 223 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-R 223 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-C
Confidence 34678999999 5568999999999999999211 11111111222 234788988888888876 4
Q ss_pred CeEEEEECCCCCeee-EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCC----eeEEEEec
Q 004885 619 RTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFKC 681 (725)
Q Consensus 619 gtIrvWDl~~~~~~l-~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~----~~v~~~~~ 681 (725)
..+.++|+++..... .........|.++.-+|.....++... ..+|...|+... +.+..++|
T Consensus 224 ~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~~~~~~~~llSwkH 290 (765)
T PF10214_consen 224 SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKSSSEKLTRLLSWKH 290 (765)
T ss_pred CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccCCCCCeeeeeeccc
Confidence 568899999876311 222234467888888887333333333 367878888762 44555555
No 431
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.90 E-value=3.8 Score=45.71 Aligned_cols=119 Identities=17% Similarity=0.202 Sum_probs=81.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE----EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004885 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i----~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~ 629 (725)
..++|.+|.||+|.+.||+--.|++|.+++....+.. .+.+..+..|....|+.+ +-++..+..| +.+|.+...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 3468999999999999999999999999998433221 122333456889999866 4555555444 677777665
Q ss_pred CeeeEEEecCCCCeEEEEEccCCCeEEEEEe-CCCcEEEEECCCCe
Q 004885 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGS 674 (725)
Q Consensus 630 ~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs-~Dg~I~IwDl~t~~ 674 (725)
...++..+.|.-.|.-..|+++.+.++.+.+ ..+++.=+-++++.
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence 5567778888888988999998775443333 34445445555443
No 432
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=91.64 E-value=9.8 Score=42.93 Aligned_cols=145 Identities=12% Similarity=0.149 Sum_probs=90.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCe--EEEEe--ccCCCCeEEEEEc---CC-CCEEEEEeCCCeEEEEECCCCC--------
Q 004885 567 GKLLATGGHDKKAVLWCTESFT--VKSTL--EEHTQWITDVRFS---PS-LSRLATSSADRTVRVWDTENPD-------- 630 (725)
Q Consensus 567 g~~LaSgs~Dg~V~IWdl~~~~--~i~~l--~~H~~~V~~Iafs---Pd-~~~Lasgs~DgtIrvWDl~~~~-------- 630 (725)
...|++||.+|.++||+..... ....+ ..-..+|..|..- +. ....+..-.-..+.||.+....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 3589999999999999975422 11111 1235677777653 22 2223333556778888873221
Q ss_pred eeeEEEecCC--CCeEEEEEcc----CCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCC
Q 004885 631 YSLRTFTGHS--TTVMSLDFHP----SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN 704 (725)
Q Consensus 631 ~~l~~~~~h~--~~V~sl~fsP----~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg 704 (725)
..+.....|. .....+++-| .++.++|.=+.||.+.+|+-+.....+.+...--...++|++....+++++++.
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~ 196 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSW 196 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCce
Confidence 2233333343 2334444433 335788899999999999987655444444333345677888888899998888
Q ss_pred eEEEEEC
Q 004885 705 YISILDV 711 (725)
Q Consensus 705 ~V~IwDl 711 (725)
.|..|..
T Consensus 197 ~l~~Yky 203 (418)
T PF14727_consen 197 TLECYKY 203 (418)
T ss_pred eEEEecH
Confidence 8888864
No 433
>PRK13684 Ycf48-like protein; Provisional
Probab=91.63 E-value=11 Score=41.17 Aligned_cols=106 Identities=16% Similarity=0.161 Sum_probs=59.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEE-EEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee
Q 004885 597 TQWITDVRFSPSLSRLATSSADRTVR-VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675 (725)
Q Consensus 597 ~~~V~~IafsPd~~~Lasgs~DgtIr-vWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~ 675 (725)
...+.++.+.|++.+++++. .|.+. .+|-. +..-..........++++.+.+++. +++.+ ..|.+++-..+.+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~g-g~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPG-QTAWTPHQRNSSRRLQSMGFQPDGN-LWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCCC-CCeEEEeeCCCcccceeeeEcCCCC-EEEEe-cCCEEEEccCCCCCc
Confidence 45789999999887776664 44333 22222 1111122223346789999999987 44444 457664333444432
Q ss_pred EEEEe-----cCCCeEEEEEecCCCEEEEEEcCCeEE
Q 004885 676 AGVFK-----CQSGATQMRFQPRLGRILAAAIENYIS 707 (725)
Q Consensus 676 v~~~~-----~~~~V~sv~fspdg~~Lla~s~Dg~V~ 707 (725)
-.... ....+..+.|.+++. +++++.+|.|.
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~ 283 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLL 283 (334)
T ss_pred cccccCCccccccceeeEEEcCCCC-EEEEcCCCeEE
Confidence 22111 124578899998755 55566666554
No 434
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.60 E-value=8.3 Score=41.64 Aligned_cols=108 Identities=8% Similarity=0.091 Sum_probs=51.5
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCeE---EEEeccCCCCe--EEEEEcCCCCEEEEEeC-----CCeEEEEECCCCC
Q 004885 566 DGKLLATGGHDK-----KAVLWCTESFTV---KSTLEEHTQWI--TDVRFSPSLSRLATSSA-----DRTVRVWDTENPD 630 (725)
Q Consensus 566 dg~~LaSgs~Dg-----~V~IWdl~~~~~---i~~l~~H~~~V--~~IafsPd~~~Lasgs~-----DgtIrvWDl~~~~ 630 (725)
++++++.|+.++ .|..||+.+.+- ...+..-..+. .+++.. ++.+.+.|+. ...+.+||+.+..
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 566777777643 566677765442 11221111111 122222 4555566654 2357788887655
Q ss_pred eee-EEEecCCCCeEEEEEccCCCeEEEEEeCCC----cEEEEECCCCeeE
Q 004885 631 YSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNGSCA 676 (725)
Q Consensus 631 ~~l-~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg----~I~IwDl~t~~~v 676 (725)
-.. ..+... ......+..-+ ..+++.|+.++ .+.+||+.+.+..
T Consensus 151 W~~~~~~p~~-~r~~~~~~~~~-~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 151 WFELPDFPGE-PRVQPVCVKLQ-NELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred eeECCCCCCC-CCCcceEEEEC-CEEEEEcCCCCccccceEEEecCCCeeE
Confidence 211 111111 11111211223 34777777553 3568898876654
No 435
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.53 E-value=6.8 Score=36.96 Aligned_cols=118 Identities=11% Similarity=0.062 Sum_probs=75.8
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCCe-------eeEEEecCCCCeEEEEEcc----CCCeEEEEEeCCCcEEEEECC
Q 004885 603 VRFSPSLSRLATSSADRTVRVWDTENPDY-------SLRTFTGHSTTVMSLDFHP----SKEDLLCSCDNNSEIRYWSIN 671 (725)
Q Consensus 603 IafsPd~~~Lasgs~DgtIrvWDl~~~~~-------~l~~~~~h~~~V~sl~fsP----~g~~llaSgs~Dg~I~IwDl~ 671 (725)
-.|......|+.++..+.|.|++...... .+..+ .-...|++|+--+ ++..+|+.|+ ...|-.||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 35655566777888888888888764321 22222 2335577775444 2345777777 5578899999
Q ss_pred CCeeEEEEecCCCeEEEEEecC---CCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885 672 NGSCAGVFKCQSGATQMRFQPR---LGRILAAAIENYISILDVETQVCRLKLQV 722 (725)
Q Consensus 672 t~~~v~~~~~~~~V~sv~fspd---g~~Lla~s~Dg~V~IwDl~tg~~v~~l~G 722 (725)
+..-+.--+...+|.+|.+-.- ..-++..+....|.-||.+..+..-+..|
T Consensus 82 ~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVtg 135 (136)
T PF14781_consen 82 NNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVTG 135 (136)
T ss_pred cCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEecc
Confidence 8766655555688888877322 23466667777888888876666655443
No 436
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.52 E-value=2.1 Score=48.05 Aligned_cols=91 Identities=15% Similarity=0.192 Sum_probs=64.9
Q ss_pred EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEE-EEE-ccC----------------
Q 004885 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS-LDF-HPS---------------- 651 (725)
Q Consensus 590 i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~s-l~f-sP~---------------- 651 (725)
...|......+.+|..+|++.+.++.+.-|.|.++|+.++. .++.++|..+.=.. +.. ...
T Consensus 300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~-vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~ 378 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGI-VVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF 378 (415)
T ss_pred EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCCh-hhhhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence 34555666778999999999999998888999999999877 67777765542111 110 111
Q ss_pred CCeEEEEEeCCCcEEEEECCCCeeEEEEec
Q 004885 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKC 681 (725)
Q Consensus 652 g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~ 681 (725)
.-.|++-+-..|.|.||++++|..+..+..
T Consensus 379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 379 ALFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred eEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 123445566788999999999988887765
No 437
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=91.15 E-value=11 Score=42.45 Aligned_cols=31 Identities=13% Similarity=0.200 Sum_probs=25.5
Q ss_pred CeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885 684 GATQMRFQPRLGRILAAAIENYISILDVETQ 714 (725)
Q Consensus 684 ~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg 714 (725)
.|.+|++.+..+.+++...++.|.+||+..+
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 3899999998889999999999999999753
No 438
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.10 E-value=8.1 Score=42.76 Aligned_cols=98 Identities=10% Similarity=0.074 Sum_probs=54.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----e--EE-EEecc----CCCCeEEEEEcCCCCEEEEEeCC-----
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESF-----T--VK-STLEE----HTQWITDVRFSPSLSRLATSSAD----- 618 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~-----~--~i-~~l~~----H~~~V~~IafsPd~~~Lasgs~D----- 618 (725)
...+.++|.+++ +++ ++.+..+++.|.+.. + .+ ..+.. +...+..++|.||+.+.++.+..
T Consensus 72 ~~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~ 149 (367)
T TIGR02604 72 SMVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKV 149 (367)
T ss_pred CCccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCcee
Confidence 346889998888 444 444544444455321 2 11 12222 23457789999998876654421
Q ss_pred --------------CeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEE
Q 004885 619 --------------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (725)
Q Consensus 619 --------------gtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaS 658 (725)
+.|..+|.+... +..+..--.....++|+|+|. ++++
T Consensus 150 ~~~~~~~~~~~~~~g~i~r~~pdg~~--~e~~a~G~rnp~Gl~~d~~G~-l~~t 200 (367)
T TIGR02604 150 TRPGTSDESRQGLGGGLFRYNPDGGK--LRVVAHGFQNPYGHSVDSWGD-VFFC 200 (367)
T ss_pred ccCCCccCcccccCceEEEEecCCCe--EEEEecCcCCCccceECCCCC-EEEE
Confidence 345555555443 333332223457899999987 5544
No 439
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.99 E-value=13 Score=41.64 Aligned_cols=144 Identities=8% Similarity=0.080 Sum_probs=80.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCC--CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe----
Q 004885 558 VESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---- 631 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~--~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~---- 631 (725)
...+..++|+.+++.+..-..++-||--. ...+ -......++.+.|.+++..++++ .+|.+. |....+..
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~--~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPH--NRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEe--cCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccc
Confidence 44566777887777765433333444321 1222 12234668999999998877766 455543 33333320
Q ss_pred eeEEEec--CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe----cCCCeEEEEEecCCCEEEEEEcCCe
Q 004885 632 SLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQMRFQPRLGRILAAAIENY 705 (725)
Q Consensus 632 ~l~~~~~--h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~----~~~~V~sv~fspdg~~Lla~s~Dg~ 705 (725)
....... ....+.++.|.+++. ++++| .+|.|... ...|+.-.... .....+.+.|.++ ...++.+.+|.
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G-~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~-~~g~~~G~~G~ 392 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKE-AWAAG-GSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDD-KKGFVLGNDGV 392 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCc-EEEEE-CCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCC-CceEEEeCCcE
Confidence 1111111 123588999998876 55444 46766554 34444322222 1456889999776 45556677787
Q ss_pred EEEE
Q 004885 706 ISIL 709 (725)
Q Consensus 706 V~Iw 709 (725)
|.-|
T Consensus 393 il~~ 396 (398)
T PLN00033 393 LLRY 396 (398)
T ss_pred EEEe
Confidence 7655
No 440
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.67 E-value=1 Score=32.69 Aligned_cols=42 Identities=5% Similarity=0.067 Sum_probs=33.6
Q ss_pred cCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEe
Q 004885 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQ 691 (725)
Q Consensus 650 P~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fs 691 (725)
|+++.+++++..++.|.++|..++..+..+........++|+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 577878888888899999999999988888875556666653
No 441
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.46 E-value=8.6 Score=45.91 Aligned_cols=142 Identities=14% Similarity=0.182 Sum_probs=86.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEE------EEec----------------cCCCCeEEEEEcC--CCCEEEEEeCCCeEE
Q 004885 567 GKLLATGGHDKKAVLWCTESFTVK------STLE----------------EHTQWITDVRFSP--SLSRLATSSADRTVR 622 (725)
Q Consensus 567 g~~LaSgs~Dg~V~IWdl~~~~~i------~~l~----------------~H~~~V~~IafsP--d~~~Lasgs~DgtIr 622 (725)
.+++++|. .+.|+||+.+..... ..+. .-...|+.|...- +...|+.|..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 66777765 678999988642211 0110 0112345554433 456789999999999
Q ss_pred EEECCC-------C----C--------eeeEEEecCCCCeEEEEEc--cCCCeEEEEEeCCCcEEEEECCCC--eeE--E
Q 004885 623 VWDTEN-------P----D--------YSLRTFTGHSTTVMSLDFH--PSKEDLLCSCDNNSEIRYWSINNG--SCA--G 677 (725)
Q Consensus 623 vWDl~~-------~----~--------~~l~~~~~h~~~V~sl~fs--P~g~~llaSgs~Dg~I~IwDl~t~--~~v--~ 677 (725)
+|.+++ . . .+...+. ....+++|+++ ...+ ++|++++...|.||-+... +.. .
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r-lIAVSsNs~~VTVFaf~l~~~r~~~~~ 205 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR-LIAVSSNSQEVTVFAFALVDERFYHVP 205 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce-EEEEecCCceEEEEEEecccccccccc
Confidence 996531 0 0 0111222 23578999998 5544 7888887788888765431 111 1
Q ss_pred EEecCCCeEEEEEecCC----C--EEEEEEcCCeEEEEEC
Q 004885 678 VFKCQSGATQMRFQPRL----G--RILAAAIENYISILDV 711 (725)
Q Consensus 678 ~~~~~~~V~sv~fspdg----~--~Lla~s~Dg~V~IwDl 711 (725)
...+..-|.+|+|-++. + +|++++-.|.|.+|++
T Consensus 206 s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 206 SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 22345669999997654 1 5666667899988887
No 442
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=90.33 E-value=8.1 Score=40.74 Aligned_cols=152 Identities=14% Similarity=0.059 Sum_probs=102.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEE
Q 004885 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~ 636 (725)
.-+.++-.|||..-+++...+.|--.|-.+++....-.+....-..|..-||+...++-+.. -|.-.|-++.+ +..|
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~e--vt~f 139 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLE--VTRF 139 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccc--eEEe
Confidence 35678889999999999888889888999998877666666777788899998777665444 56666666654 3333
Q ss_pred e---c-CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004885 637 T---G-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILD 710 (725)
Q Consensus 637 ~---~-h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s~Dg~V~IwD 710 (725)
. . -........|++.|. +.+++. .|.---.|-. ...+.+|.. ....+.||..|+|...++.-.++.|...|
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~-lWFt~q-~G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiarid 216 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGN-LWFTGQ-IGAYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARID 216 (353)
T ss_pred ecccccCCCcccceeeCCCcc-EEEeec-cccceecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcc
Confidence 2 1 234578889999988 555665 2211111211 123334433 45678889999988777766677777777
Q ss_pred CCCC
Q 004885 711 VETQ 714 (725)
Q Consensus 711 l~tg 714 (725)
-.++
T Consensus 217 p~~~ 220 (353)
T COG4257 217 PFAG 220 (353)
T ss_pred cccC
Confidence 6655
No 443
>PHA03098 kelch-like protein; Provisional
Probab=90.11 E-value=3.2 Score=48.24 Aligned_cols=143 Identities=11% Similarity=0.044 Sum_probs=69.5
Q ss_pred CCCEEEEEeCCC------cEEEEECCCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCCee
Q 004885 566 DGKLLATGGHDK------KAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYS 632 (725)
Q Consensus 566 dg~~LaSgs~Dg------~V~IWdl~~~~~i~~--l~~H~~~V~~IafsPd~~~Lasgs~D-----gtIrvWDl~~~~~~ 632 (725)
++.+++.||.++ .+..||..+.+-... +.........+.+ ++..++.|+.+ ..+.+||..+..-
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W- 370 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKW- 370 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCce-
Confidence 566677776543 567788766443211 1111111222222 56666777765 3567788776541
Q ss_pred eEEEec--CCCCeEEEEEccCCCeEEEEEeCC------CcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEEc
Q 004885 633 LRTFTG--HSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAI 702 (725)
Q Consensus 633 l~~~~~--h~~~V~sl~fsP~g~~llaSgs~D------g~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s~ 702 (725)
..... +...-.+++.. ++.+++.|+.+ ..|.+||+.+.+....-.. .....+++. .++..++.|+.
T Consensus 371 -~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~ 446 (534)
T PHA03098 371 -REEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY-HDGKIYVIGGI 446 (534)
T ss_pred -eeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE-ECCEEEEECCc
Confidence 11111 11111122221 34477776632 3588999887665432221 111122222 23445555543
Q ss_pred C--------CeEEEEECCCCe
Q 004885 703 E--------NYISILDVETQV 715 (725)
Q Consensus 703 D--------g~V~IwDl~tg~ 715 (725)
+ ..+.+||.++.+
T Consensus 447 ~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 447 SYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred cCCCCCcccceEEEecCCCCc
Confidence 2 238899988763
No 444
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.58 E-value=4.6 Score=45.11 Aligned_cols=152 Identities=13% Similarity=0.127 Sum_probs=88.4
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCC---eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe---e
Q 004885 559 ESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---S 632 (725)
Q Consensus 559 ~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~---~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~---~ 632 (725)
+.+-|. |.+..+.|-..|-+.=|-+... -++..--...++|.+|.|++|.+.|++--.|++|-+++...... .
T Consensus 26 ngvFfD-DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFD-DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeec-cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 344454 3333333334555666655432 22222223467999999999999999999999999998843221 1
Q ss_pred eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC-CeeEEEEec-CCCeEEEEEecCCCEEEEEEc--CCeEEE
Q 004885 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKC-QSGATQMRFQPRLGRILAAAI--ENYISI 708 (725)
Q Consensus 633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t-~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~--Dg~V~I 708 (725)
..+.+.....|...+|....+ +. ... +..|.+|-+.. .+.++..+. ...|.-..|+++-..++.++. .+++.-
T Consensus 105 ~~~ck~k~~~IlGF~W~~s~e-~A-~i~-~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnp 181 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSSTE-IA-FIT-DQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNP 181 (657)
T ss_pred HHHhccCcceeEEEEEecCee-EE-EEe-cCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecccccccccc
Confidence 223333345688899987744 33 333 33466665432 222333332 466888888888776555544 455555
Q ss_pred EECCCC
Q 004885 709 LDVETQ 714 (725)
Q Consensus 709 wDl~tg 714 (725)
+-++++
T Consensus 182 f~~~~~ 187 (657)
T KOG2377|consen 182 FHFRAG 187 (657)
T ss_pred EEEeec
Confidence 555544
No 445
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.50 E-value=13 Score=41.07 Aligned_cols=149 Identities=8% Similarity=0.026 Sum_probs=84.5
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEeccC--CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCC-CCeEE
Q 004885 569 LLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMS 645 (725)
Q Consensus 569 ~LaSgs~Dg~V~IWdl~~~~~i~~l~~H--~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~-~~V~s 645 (725)
.++++..||.|.-.|.+++..+.....- ...+.+-.+..+|+ |+.++.++.+..+|.+++. .+-.+.... ..+..
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~-~~W~~~~~~~~~~~~ 147 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGT-LVWSRNVGGSPYYAS 147 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCc-EEEEEecCCCeEEec
Confidence 4555577888888888888766433221 12222222333554 7788889989999998777 343333333 11222
Q ss_pred EEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCC-eEEEEEe--cCCCEEEEEEc--CCeEEEEECCCCeEEEEE
Q 004885 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQ--PRLGRILAAAI--ENYISILDVETQVCRLKL 720 (725)
Q Consensus 646 l~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~-V~sv~fs--pdg~~Lla~s~--Dg~V~IwDl~tg~~v~~l 720 (725)
..+-.++. +..++.++.+...|..++..+..+..... -..+... .....++++.. ++.+.-+|+++|..+-..
T Consensus 148 ~~v~~~~~--v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 148 PPVVGDGT--VYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred CcEEcCcE--EEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEeeee
Confidence 22233332 33343678999999999988777654221 0011111 12234555555 567888888888776654
Q ss_pred e
Q 004885 721 Q 721 (725)
Q Consensus 721 ~ 721 (725)
+
T Consensus 226 ~ 226 (370)
T COG1520 226 K 226 (370)
T ss_pred e
Confidence 3
No 446
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.43 E-value=32 Score=37.45 Aligned_cols=144 Identities=12% Similarity=0.178 Sum_probs=85.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCc------EEEEECCC--C--eEEE-----EeccCCC--------CeEEEEEcCCCCE
Q 004885 555 TSKVESCHFSPDGKLLATGGHDKK------AVLWCTES--F--TVKS-----TLEEHTQ--------WITDVRFSPSLSR 611 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~Dg~------V~IWdl~~--~--~~i~-----~l~~H~~--------~V~~IafsPd~~~ 611 (725)
-+.+..|.+.+++..+++.+.++. +..+++.. . ..+. .+..-.+ ...+|++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 356888999876666666677777 66565543 1 1111 1111111 3457888778888
Q ss_pred EEEEeCC------CeEEEEECCCCCeeeEEE---------------ecCCCCeEEEEEccCCCeEEEEEe----CCC--c
Q 004885 612 LATSSAD------RTVRVWDTENPDYSLRTF---------------TGHSTTVMSLDFHPSKEDLLCSCD----NNS--E 664 (725)
Q Consensus 612 Lasgs~D------gtIrvWDl~~~~~~l~~~---------------~~h~~~V~sl~fsP~g~~llaSgs----~Dg--~ 664 (725)
+++.-.+ ..|+.++.. +. .+..+ ........+|+++|+|..++++.- .|+ .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~-~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GR-VIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-Cc-ccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 8887777 788888876 33 22222 113356899999999986554321 122 1
Q ss_pred -------EEE--EECCC-CeeEEEEe----------cCCCeEEEEEecCCCEEEEE
Q 004885 665 -------IRY--WSINN-GSCAGVFK----------CQSGATQMRFQPRLGRILAA 700 (725)
Q Consensus 665 -------I~I--wDl~t-~~~v~~~~----------~~~~V~sv~fspdg~~Lla~ 700 (725)
++| ||..+ +.....+. ....|+.+.+-++++.|+.-
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 455 45544 32333222 13568899999998866654
No 447
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=89.36 E-value=45 Score=38.12 Aligned_cols=55 Identities=20% Similarity=0.181 Sum_probs=37.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE--EEEec-----cCCCCeEEEEEcCCC
Q 004885 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLE-----EHTQWITDVRFSPSL 609 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~--i~~l~-----~H~~~V~~IafsPd~ 609 (725)
-..-..|+|.||+++|++--..|.|++++..++.. +..+. .-......|+|+|+-
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 44578999999998777765469999998654422 21111 124678999999874
No 448
>PRK10350 hypothetical protein; Provisional
Probab=89.29 E-value=1.1 Score=40.99 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=7.2
Q ss_pred cCccchhhhhh-hhH
Q 004885 68 NEKHSESAASY-IES 81 (725)
Q Consensus 68 ~~~~s~~a~qY-iq~ 81 (725)
+..++.....| +..
T Consensus 21 N~~NNPnqpGY~ipS 35 (145)
T PRK10350 21 NTLNNPNQPGYQIPS 35 (145)
T ss_pred hccCCCCCCCCcCcH
Confidence 44445555667 443
No 449
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=89.00 E-value=2.3 Score=41.90 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=26.9
Q ss_pred CCeEEEEEccC-----CCeEEEEEeCCCcEEEEECCC
Q 004885 641 TTVMSLDFHPS-----KEDLLCSCDNNSEIRYWSINN 672 (725)
Q Consensus 641 ~~V~sl~fsP~-----g~~llaSgs~Dg~I~IwDl~t 672 (725)
..|.+++|+|. ++.+|++...++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 37899999994 467899999999999998763
No 450
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=88.85 E-value=19 Score=41.41 Aligned_cols=143 Identities=12% Similarity=0.058 Sum_probs=75.2
Q ss_pred CCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCC---CCeEEEEEccC
Q 004885 575 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS---TTVMSLDFHPS 651 (725)
Q Consensus 575 ~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~---~~V~sl~fsP~ 651 (725)
..+.+.++|.+ |.....+.........+.+.++|.+++... ..++.+|+... .+..+.--. ..-+.+.+.|+
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~--v~~~~~l~~~~~~~HHD~~~l~n 200 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGK--VIWEYDLPGGYYDFHHDIDELPN 200 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT----EEEEEE--TTEE-B-S-EEE-TT
T ss_pred CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCC--EEEeeecCCcccccccccEECCC
Confidence 34556666643 444444432222222266778888777665 77888888643 233332211 11356778899
Q ss_pred CCeEEEEEe-------------CCCcEEEEECCCCeeEEEEec--------C--------------------CCeEEEEE
Q 004885 652 KEDLLCSCD-------------NNSEIRYWSINNGSCAGVFKC--------Q--------------------SGATQMRF 690 (725)
Q Consensus 652 g~~llaSgs-------------~Dg~I~IwDl~t~~~v~~~~~--------~--------------------~~V~sv~f 690 (725)
|+.++++.. .| .|..+| .+|+.+..+.. . -++.+|.+
T Consensus 201 Gn~L~l~~~~~~~~~~~~~~~~~D-~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~y 278 (477)
T PF05935_consen 201 GNLLILASETKYVDEDKDVDTVED-VIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDY 278 (477)
T ss_dssp S-EEEEEEETTEE-TS-EE---S--EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEE
T ss_pred CCEEEEEeecccccCCCCccEecC-EEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEE
Confidence 886554441 22 366677 77777766542 1 23789999
Q ss_pred ecCCCEEEEEEcC-CeEEEEECCCCeEEEEEeCCC
Q 004885 691 QPRLGRILAAAIE-NYISILDVETQVCRLKLQVSH 724 (725)
Q Consensus 691 spdg~~Lla~s~D-g~V~IwDl~tg~~v~~l~GH~ 724 (725)
.+....|++.+.. ..|..+|.++++++-.+-.|.
T Consensus 279 d~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 279 DPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp ETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred eCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 9966677766664 689999999999998887764
No 451
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.70 E-value=9.1 Score=39.00 Aligned_cols=104 Identities=17% Similarity=0.216 Sum_probs=63.3
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC--C---cEEEE---ECC--CCeeEE--
Q 004885 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--S---EIRYW---SIN--NGSCAG-- 677 (725)
Q Consensus 610 ~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D--g---~I~Iw---Dl~--t~~~v~-- 677 (725)
+.|+.+.....|.+|++......+..-...-+.|..+.++..|++++..-... . .+|+| ... ....+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 45555566788999999954433333333447899999999999655432211 2 45664 222 111111
Q ss_pred ---------------------EEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885 678 ---------------------VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ 714 (725)
Q Consensus 678 ---------------------~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg 714 (725)
.+.....+.+++.+|-.+.|++|+ ++.+.+|.+...
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence 111245678888888877776654 567888887654
No 452
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=88.65 E-value=37 Score=36.28 Aligned_cols=149 Identities=11% Similarity=0.064 Sum_probs=90.0
Q ss_pred cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004885 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (725)
Q Consensus 507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~ 586 (725)
.++....++.-+++++..+...++ ++..+.- .+.-+++.. .|++..++..|.-+.+.|+.+
T Consensus 97 ~yvyvad~ssGL~IvDIS~P~sP~----------------~~~~lnt-~gyaygv~v--sGn~aYVadlddgfLivdvsd 157 (370)
T COG5276 97 EYVYVADWSSGLRIVDISTPDSPT----------------LIGFLNT-DGYAYGVYV--SGNYAYVADLDDGFLIVDVSD 157 (370)
T ss_pred cEEEEEcCCCceEEEeccCCCCcc----------------eeccccC-CceEEEEEe--cCCEEEEeeccCcEEEEECCC
Confidence 355555577778888554443221 1111111 134556666 588888888677788888865
Q ss_pred C---eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCC-CeEEEEEccCCCeEEEEEeCC
Q 004885 587 F---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST-TVMSLDFHPSKEDLLCSCDNN 662 (725)
Q Consensus 587 ~---~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~-~V~sl~fsP~g~~llaSgs~D 662 (725)
. .....+.........++++ |++-+.+..|+-+.|-|+.++..++..-.-..+ .+.++..+++.. +++.. +
T Consensus 158 pssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~-y~vvy--~ 232 (370)
T COG5276 158 PSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRA-YLVVY--D 232 (370)
T ss_pred CCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCee-EEEEc--c
Confidence 3 2333444444445666665 678888889999999999988754433322233 688888877644 33222 3
Q ss_pred CcEEEEECCCCeeEEEE
Q 004885 663 SEIRYWSINNGSCAGVF 679 (725)
Q Consensus 663 g~I~IwDl~t~~~v~~~ 679 (725)
..+.+-|..+.+....+
T Consensus 233 egvlivd~s~~ssp~~~ 249 (370)
T COG5276 233 EGVLIVDVSGPSSPTVF 249 (370)
T ss_pred cceEEEecCCCCCceEe
Confidence 45778887766544333
No 453
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=88.47 E-value=25 Score=43.04 Aligned_cols=134 Identities=13% Similarity=0.058 Sum_probs=79.1
Q ss_pred cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccC--CCe-
Q 004885 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS--KED- 654 (725)
Q Consensus 578 ~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~--g~~- 654 (725)
.||+++-. ..+..+.. .+.++....+.+...++.++.++.+...++.........-......|.|++++|- ++.
T Consensus 471 ~iRl~ss~--~~~~~W~~-p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~ 547 (1096)
T KOG1897|consen 471 SIRLVSSA--GLRSEWRP-PGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNK 547 (1096)
T ss_pred cEEEEcch--hhhhcccC-CCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCc
Confidence 45665533 12223332 3445555555566677777777888777777655222222233467999999976 444
Q ss_pred --EEEEEeCCCcEEEEE-CCCCeeEEEEe--c---CCCeEEEEEecCCCEEEEEEcCCeEEEE--ECCCC
Q 004885 655 --LLCSCDNNSEIRYWS-INNGSCAGVFK--C---QSGATQMRFQPRLGRILAAAIENYISIL--DVETQ 714 (725)
Q Consensus 655 --llaSgs~Dg~I~IwD-l~t~~~v~~~~--~---~~~V~sv~fspdg~~Lla~s~Dg~V~Iw--Dl~tg 714 (725)
+++.|..+..+.+.- +.+...+.... . ...|.-.+|-.|..+|+++..||.+.-| |..+|
T Consensus 548 s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg 617 (1096)
T KOG1897|consen 548 SRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTG 617 (1096)
T ss_pred ceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccc
Confidence 888888776655543 33333333322 2 2335555666667899999999988655 44554
No 454
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.44 E-value=2.9 Score=42.90 Aligned_cols=74 Identities=15% Similarity=0.170 Sum_probs=52.8
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCCeeeEE------Ee-------cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC
Q 004885 605 FSPSLSRLATSSADRTVRVWDTENPDYSLRT------FT-------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (725)
Q Consensus 605 fsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~------~~-------~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~ 671 (725)
+..++.+|++.+.+|.+++||+.+.+..+.. +. .....|..+.+..+|. .+++-+ +|..+.||.+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-PIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC-EEEEEe-CCCEEEeccc
Confidence 3446788999999999999999987632221 11 2456788899998876 444554 5789999988
Q ss_pred CCeeEEEEe
Q 004885 672 NGSCAGVFK 680 (725)
Q Consensus 672 t~~~v~~~~ 680 (725)
-+..+....
T Consensus 96 L~~W~~vsd 104 (219)
T PF07569_consen 96 LGCWIRVSD 104 (219)
T ss_pred cceeEEecc
Confidence 776665544
No 455
>PRK10115 protease 2; Provisional
Probab=87.93 E-value=71 Score=38.63 Aligned_cols=152 Identities=11% Similarity=0.023 Sum_probs=77.6
Q ss_pred EEEEEcCCCCEEEEEeCC------CcEEEEECCCC--eEEEEeccCCCCeEEEEEcC-CCCEEEEEeC---CCeEEEEEC
Q 004885 559 ESCHFSPDGKLLATGGHD------KKAVLWCTESF--TVKSTLEEHTQWITDVRFSP-SLSRLATSSA---DRTVRVWDT 626 (725)
Q Consensus 559 ~~i~fSpdg~~LaSgs~D------g~V~IWdl~~~--~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~---DgtIrvWDl 626 (725)
..++|++|++.|+.+..+ ..|+.+++.++ +....+.+.........+.+ ++++++..+. ++.+.+|+.
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 458999999866655432 36788888876 44445554334344233334 7777654433 457888885
Q ss_pred CCCCeeeEEEecCCCCe-EEEEEccCCCeEEEEEeCC-C--cEEEEECC-CCeeEEEEec--CCCeEEEEEecCCCEEEE
Q 004885 627 ENPDYSLRTFTGHSTTV-MSLDFHPSKEDLLCSCDNN-S--EIRYWSIN-NGSCAGVFKC--QSGATQMRFQPRLGRILA 699 (725)
Q Consensus 627 ~~~~~~l~~~~~h~~~V-~sl~fsP~g~~llaSgs~D-g--~I~IwDl~-t~~~v~~~~~--~~~V~sv~fspdg~~Lla 699 (725)
.........+..+...+ ..+. +. +..+++....+ . .|...++. .++....+.. ...+..+.+.. .+|++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~-~~-~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~--~~l~~ 330 (686)
T PRK10115 255 ELADAEPFVFLPRRKDHEYSLD-HY-QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT--DWLVV 330 (686)
T ss_pred cCCCCCceEEEECCCCCEEEEE-eC-CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC--CEEEE
Confidence 43221122222233222 2222 32 34455444322 2 34444554 2333334444 23577788873 45554
Q ss_pred EE-cCCe--EEEEECCCC
Q 004885 700 AA-IENY--ISILDVETQ 714 (725)
Q Consensus 700 ~s-~Dg~--V~IwDl~tg 714 (725)
.. .++. |.++|+.++
T Consensus 331 ~~~~~g~~~l~~~~~~~~ 348 (686)
T PRK10115 331 EERQRGLTSLRQINRKTR 348 (686)
T ss_pred EEEeCCEEEEEEEcCCCC
Confidence 44 4554 555565433
No 456
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=87.75 E-value=1.9 Score=32.35 Aligned_cols=31 Identities=39% Similarity=0.623 Sum_probs=26.3
Q ss_pred CCeEEEEEcCC-C--CEEEEEeCCCcEEEEECCC
Q 004885 556 SKVESCHFSPD-G--KLLATGGHDKKAVLWCTES 586 (725)
Q Consensus 556 ~~V~~i~fSpd-g--~~LaSgs~Dg~V~IWdl~~ 586 (725)
+.|.+|.|||+ + .+|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46899999984 4 5888888889999999985
No 457
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=87.75 E-value=26 Score=38.26 Aligned_cols=100 Identities=18% Similarity=0.227 Sum_probs=55.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE---EEEe----ccCCCCeEEEEEcCC---CCEEEEEeC-C--------
Q 004885 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTL----EEHTQWITDVRFSPS---LSRLATSSA-D-------- 618 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~---i~~l----~~H~~~V~~IafsPd---~~~Lasgs~-D-------- 618 (725)
-+.|+|.|||++|++ ...|.|++++ ..+.. +..+ ......+..|+|+|+ ..+|++... .
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 578999999987665 5699999999 34333 2222 223467899999994 334433322 1
Q ss_pred CeEEEEECCCCC-------eeeEEEec---CCCCeEEEEEccCCCeEEEEEe
Q 004885 619 RTVRVWDTENPD-------YSLRTFTG---HSTTVMSLDFHPSKEDLLCSCD 660 (725)
Q Consensus 619 gtIrvWDl~~~~-------~~l~~~~~---h~~~V~sl~fsP~g~~llaSgs 660 (725)
..|.-|.+.... ..+..+.. .......|.|.|+|. |+++.+
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G 132 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVG 132 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeC
Confidence 244445444331 11122222 223457799999995 665554
No 458
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=87.20 E-value=2 Score=32.21 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=26.6
Q ss_pred CCeEEEEEccCCC--eEEEEEeCCCcEEEEECCC
Q 004885 641 TTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINN 672 (725)
Q Consensus 641 ~~V~sl~fsP~g~--~llaSgs~Dg~I~IwDl~t 672 (725)
+.|.++.|+|... .+|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998654 6888887789999999995
No 459
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=86.91 E-value=54 Score=36.12 Aligned_cols=153 Identities=12% Similarity=0.051 Sum_probs=82.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCC-CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecC--CCC
Q 004885 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH--STT 642 (725)
Q Consensus 566 dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~-~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h--~~~ 642 (725)
+|+ |+.++.++.++.+|.++++.+........ .+..-.+. ....++.++.++.+...|..++.......... ...
T Consensus 111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~ 188 (370)
T COG1520 111 DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLS 188 (370)
T ss_pred CCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccc
Confidence 666 77788899999999988998888776551 11111111 22344444467888888888776322211110 111
Q ss_pred eEEEEEccCCCeEEEEEeC--CCcEEEEECCCCeeEEEEecCCCeE-----EE-EEec----CCCEEEEEEcCCeEEEEE
Q 004885 643 VMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFKCQSGAT-----QM-RFQP----RLGRILAAAIENYISILD 710 (725)
Q Consensus 643 V~sl~fsP~g~~llaSgs~--Dg~I~IwDl~t~~~v~~~~~~~~V~-----sv-~fsp----dg~~Lla~s~Dg~V~IwD 710 (725)
+..--...+ . .++.+.. ++.+.-+|..+|......+....+. .. .+.. .+..++.++.++.+..+|
T Consensus 189 ~~~~~~~~~-~-~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~ 266 (370)
T COG1520 189 IYGSPAIAS-G-TVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLD 266 (370)
T ss_pred cccCceeec-c-eEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEE
Confidence 111111112 2 2334443 5567777888888776654211111 01 1100 012345666678888999
Q ss_pred CCCCeEEEEEeC
Q 004885 711 VETQVCRLKLQV 722 (725)
Q Consensus 711 l~tg~~v~~l~G 722 (725)
..+|+.+-+++.
T Consensus 267 ~~~G~~~W~~~~ 278 (370)
T COG1520 267 ADTGELIWSFPA 278 (370)
T ss_pred cCCCceEEEEec
Confidence 999888776654
No 460
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=86.88 E-value=0.059 Score=59.91 Aligned_cols=148 Identities=16% Similarity=0.172 Sum_probs=97.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEE-EeCCCeEEEEECCCCCeeeEEE
Q 004885 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADRTVRVWDTENPDYSLRTF 636 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Las-gs~DgtIrvWDl~~~~~~l~~~ 636 (725)
-....|-+.+.-++.++.+..|..||-.. ..+..+. ..+...+++|+-+++.++. +-..+.+.+||+.+.......+
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~ag-q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~ 114 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAG-QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES 114 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhc-ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence 34456777666688888888999998543 3332222 2455678888888776544 4567899999998754211222
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004885 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILD 710 (725)
Q Consensus 637 ~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~-~~~~V~sv~fspdg~~Lla~s~Dg~V~IwD 710 (725)
.+. ..-.-+.|++... .++.+...|.|.|++..+.+.+.... +...+++++|.+. .+.+.+++|..+.+-.
T Consensus 115 gg~-~s~sll~wsKg~~-el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lE-d~vil~dcd~~L~v~~ 186 (615)
T KOG2247|consen 115 GGT-SSKSLLAWSKGTP-ELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLE-DYVILCDCDNTLSVTT 186 (615)
T ss_pred cCc-chHHHHhhccCCc-cccccccccceEEEeccchhhhhhhcccccceeEEEeccc-ceeeecCcHHHHHHhh
Confidence 221 1122267887766 44566778899999988776665554 5678999999998 5666777765544433
No 461
>PHA02790 Kelch-like protein; Provisional
Probab=86.74 E-value=9.2 Score=44.03 Aligned_cols=138 Identities=7% Similarity=-0.012 Sum_probs=65.1
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCeEEE--EeccCCCCeEEEEEcCCCCEEEEEeCC--CeEEEEECCCCCeeeEEE
Q 004885 566 DGKLLATGGHDK-----KAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYSLRTF 636 (725)
Q Consensus 566 dg~~LaSgs~Dg-----~V~IWdl~~~~~i~--~l~~H~~~V~~IafsPd~~~Lasgs~D--gtIrvWDl~~~~~~l~~~ 636 (725)
++.++++||.++ ++..||..+.+-.. .+.........+. -++...+.|+.+ .++..||..+.. ....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~--W~~~ 346 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAA--WVNM 346 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCe--EEEC
Confidence 455667777543 56678876643221 1111111122222 256666777653 357788876543 1111
Q ss_pred ecC---CCCeEEEEEccCCCeEEEEEeCCC---cEEEEECCCCeeEEEEecCCC--eEEEEEecCCCEEEEEEcCCeEEE
Q 004885 637 TGH---STTVMSLDFHPSKEDLLCSCDNNS---EIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAIENYISI 708 (725)
Q Consensus 637 ~~h---~~~V~sl~fsP~g~~llaSgs~Dg---~I~IwDl~t~~~v~~~~~~~~--V~sv~fspdg~~Lla~s~Dg~V~I 708 (725)
..- ......+.+ + +.+++.|+.++ .+.+||.++......-....+ -.+++ .-+ +.|++.+ |.+.+
T Consensus 347 ~~l~~~r~~~~~~~~--~-g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~-~~IYv~G--G~~e~ 419 (480)
T PHA02790 347 PSLLKPRCNPAVASI--N-NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFG-RRLFLVG--RNAEF 419 (480)
T ss_pred CCCCCCCcccEEEEE--C-CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EEC-CEEEEEC--CceEE
Confidence 111 111112222 3 44777777543 477889887655432221111 11222 223 3444433 34677
Q ss_pred EECCCC
Q 004885 709 LDVETQ 714 (725)
Q Consensus 709 wDl~tg 714 (725)
||.++.
T Consensus 420 ydp~~~ 425 (480)
T PHA02790 420 YCESSN 425 (480)
T ss_pred ecCCCC
Confidence 777665
No 462
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=86.49 E-value=8.7 Score=40.09 Aligned_cols=140 Identities=14% Similarity=0.139 Sum_probs=76.1
Q ss_pred EEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-C--CeEEEEECCC-CCeee-EEE---ecCCCCeEEEEEccC
Q 004885 580 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-D--RTVRVWDTEN-PDYSL-RTF---TGHSTTVMSLDFHPS 651 (725)
Q Consensus 580 ~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-D--gtIrvWDl~~-~~~~l-~~~---~~h~~~V~sl~fsP~ 651 (725)
.+||+.+.+..-.-......+.+-.|-+||++|.+|+. | ..|++++... ...+. ... -....+=.++..-||
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D 128 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD 128 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence 46887775543222222334444567889999999876 3 3588888654 11111 111 011122334455678
Q ss_pred CCeEEEEEeCCCcEEEEECCC-CeeEEEE---ec------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 652 KEDLLCSCDNNSEIRYWSINN-GSCAGVF---KC------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 652 g~~llaSgs~Dg~I~IwDl~t-~~~v~~~---~~------~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
|+.+++.|....+..+|.-+. ......+ .. ..--.-+...|+|+.++.+..+ -.|||..+.+.++.|.
T Consensus 129 G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 129 GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTLP 206 (243)
T ss_pred CCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeCC
Confidence 885555555544566666532 1111111 10 0112345668998888777654 4567998888877764
No 463
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.49 E-value=5.7 Score=45.10 Aligned_cols=74 Identities=11% Similarity=0.136 Sum_probs=47.6
Q ss_pred CeEEEEEccCCCeEEEEEeCCCcEEEEEC----------CCCeeEEEEe------------cCCCeEEEEEecCC---CE
Q 004885 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSI----------NNGSCAGVFK------------CQSGATQMRFQPRL---GR 696 (725)
Q Consensus 642 ~V~sl~fsP~g~~llaSgs~Dg~I~IwDl----------~t~~~v~~~~------------~~~~V~sv~fspdg---~~ 696 (725)
.|..|..++.|..++.+| .+|.+ |..+ +.|+.+.... .+-.+..++|+|+. .+
T Consensus 105 eV~~vl~s~~GS~VaL~G-~~Gi~-vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIG-IKGLM-VMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred EEEEEEecCCCceEEEec-CCeeE-EEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 477888899998555444 46644 4333 2333221111 12236778999985 57
Q ss_pred EEEEEcCCeEEEEECCCCeEE
Q 004885 697 ILAAAIENYISILDVETQVCR 717 (725)
Q Consensus 697 Lla~s~Dg~V~IwDl~tg~~v 717 (725)
|+.-.+|++|+|||+...+.+
T Consensus 183 L~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEEEecCcEEEEEecCCcchh
Confidence 888899999999999765444
No 464
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.23 E-value=8.4 Score=43.83 Aligned_cols=76 Identities=20% Similarity=0.237 Sum_probs=46.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEC---------CCCeEEE---Ee-------c-cCCCCeEEEEEcCCC---CE
Q 004885 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCT---------ESFTVKS---TL-------E-EHTQWITDVRFSPSL---SR 611 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl---------~~~~~i~---~l-------~-~H~~~V~~IafsPd~---~~ 611 (725)
.-.|.-|..++.|..++-+|.+|.+.++=. ++++.+. ++ . ...-.+.-++|||+. ..
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 345888999999999999998986665431 2222111 11 0 011224456777753 55
Q ss_pred EEEEeCCCeEEEEECCCCC
Q 004885 612 LATSSADRTVRVWDTENPD 630 (725)
Q Consensus 612 Lasgs~DgtIrvWDl~~~~ 630 (725)
|..-+.|.+|||||+....
T Consensus 183 L~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEEEecCcEEEEEecCCcc
Confidence 6666677777777776544
No 465
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=85.61 E-value=54 Score=39.04 Aligned_cols=124 Identities=14% Similarity=0.175 Sum_probs=70.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee-EEEe-cCCCCeEEEEEcc------CCCeEEEEEe-CC--CcE
Q 004885 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFT-GHSTTVMSLDFHP------SKEDLLCSCD-NN--SEI 665 (725)
Q Consensus 597 ~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l-~~~~-~h~~~V~sl~fsP------~g~~llaSgs-~D--g~I 665 (725)
...|..|.|.++++.+++.-.+|.|.+||........ .... .+...|.-=+|-+ ....+|+.+. .+ -++
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 5779999999999999999999999999993322111 0111 1111111112222 2233444444 22 257
Q ss_pred EEEEC--CCCeeEEEE---ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 666 RYWSI--NNGSCAGVF---KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 666 ~IwDl--~t~~~v~~~---~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
+++.+ +...+...- ..........|+-..+.|+.- .+++|.+|++-..+..+++.
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~ 268 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTIS 268 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEE
Confidence 78888 333333221 112334444455444544433 77899999998887777654
No 466
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.57 E-value=20 Score=42.54 Aligned_cols=40 Identities=8% Similarity=0.100 Sum_probs=33.2
Q ss_pred CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 682 QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 682 ~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
...+..|.++|+.++|+.-..+|.|.+-+++..++...+.
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 4678889999998999888889999999888877776665
No 467
>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.
Probab=85.53 E-value=0.25 Score=52.55 Aligned_cols=6 Identities=50% Similarity=0.584 Sum_probs=0.0
Q ss_pred CccHHH
Q 004885 49 GGFLFE 54 (725)
Q Consensus 49 ~~fL~e 54 (725)
+.||.|
T Consensus 276 D~~L~e 281 (468)
T PF11498_consen 276 DTFLNE 281 (468)
T ss_dssp ------
T ss_pred HHHHhh
Confidence 455655
No 468
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=85.35 E-value=32 Score=41.71 Aligned_cols=74 Identities=19% Similarity=0.304 Sum_probs=48.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC----------CCe--eeEEE--------ecCCCCeEEEEEccCC---C
Q 004885 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTEN----------PDY--SLRTF--------TGHSTTVMSLDFHPSK---E 653 (725)
Q Consensus 597 ~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~----------~~~--~l~~~--------~~h~~~V~sl~fsP~g---~ 653 (725)
...|..|.++|+|.+|+..|..+.+ |-.+.. +.. ..+++ ..+...|..+.|+|.+ .
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 3568889999999999988876643 333311 111 11111 1234578999999984 4
Q ss_pred eEEEEEeCCCcEEEEECCC
Q 004885 654 DLLCSCDNNSEIRYWSINN 672 (725)
Q Consensus 654 ~llaSgs~Dg~I~IwDl~t 672 (725)
.++ .-..|++||+||+..
T Consensus 163 ~l~-vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 163 HLV-VLTSDNTLRLYDISD 180 (717)
T ss_pred eEE-EEecCCEEEEEecCC
Confidence 444 555599999999975
No 469
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.18 E-value=4.8 Score=41.33 Aligned_cols=65 Identities=11% Similarity=0.079 Sum_probs=44.1
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-------c-------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004885 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------E-------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (725)
Q Consensus 563 fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l-------~-------~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~ 628 (725)
+..++++|++...+|.+++||+.+.+.+..- . .....|..+.++.+|.-|++-+ +|...+||.+-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 3347889999999999999999987765321 1 2345567777776666665554 45566666653
No 470
>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.
Probab=84.82 E-value=0.28 Score=52.17 Aligned_cols=6 Identities=17% Similarity=0.506 Sum_probs=0.0
Q ss_pred CCCCCC
Q 004885 129 TQHLND 134 (725)
Q Consensus 129 ~~~~~~ 134 (725)
.+..||
T Consensus 379 q~qmng 384 (468)
T PF11498_consen 379 QHQMNG 384 (468)
T ss_dssp ------
T ss_pred hhhccc
Confidence 344554
No 471
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=84.18 E-value=35 Score=32.30 Aligned_cols=115 Identities=15% Similarity=0.061 Sum_probs=68.3
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCC--------eEEEEeccCCCCeEEEEEcC-----CCCEEEEEeCCCeEEEEE
Q 004885 559 ESCHFSPDGKLLATGGHDKKAVLWCTESF--------TVKSTLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWD 625 (725)
Q Consensus 559 ~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~--------~~i~~l~~H~~~V~~IafsP-----d~~~Lasgs~DgtIrvWD 625 (725)
..-.|......|++++.-++|.|++.... ..+..+. -...|++|+--+ ..+.|+.|+ ...|-.||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence 34566555567888888999999986532 2333443 345677775433 245566665 56789999
Q ss_pred CCCCCeeeEEEecCCCCeEEEEEccC---CCeEEEEEeCCCcEEEEECCCCeeEEE
Q 004885 626 TENPDYSLRTFTGHSTTVMSLDFHPS---KEDLLCSCDNNSEIRYWSINNGSCAGV 678 (725)
Q Consensus 626 l~~~~~~l~~~~~h~~~V~sl~fsP~---g~~llaSgs~Dg~I~IwDl~t~~~v~~ 678 (725)
+.+... ..++.-...|.++.+-.- ...+++.|+ +-.|.-||..-.+...+
T Consensus 80 V~~N~d--~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 80 VENNSD--LFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWT 132 (136)
T ss_pred cccCch--hhhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEE
Confidence 987652 223334467888776321 122444443 55677777665444433
No 472
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=83.49 E-value=66 Score=34.20 Aligned_cols=112 Identities=14% Similarity=0.068 Sum_probs=58.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-Ee-ccC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004885 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TL-EEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~-~l-~~H-~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l 633 (725)
.-..|..-|||..-++-+.. -|.-.|-++.+..+ .+ ..| ........|++.+.+.+|+...-. --.|..+. .+
T Consensus 105 ~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~y-GrLdPa~~--~i 180 (353)
T COG4257 105 SPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAY-GRLDPARN--VI 180 (353)
T ss_pred CCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccc-eecCcccC--ce
Confidence 34566667777655554332 34444544433221 11 112 345677889999998888763211 01111111 23
Q ss_pred EEEecC-CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCC
Q 004885 634 RTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673 (725)
Q Consensus 634 ~~~~~h-~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~ 673 (725)
.+|..- ...-..||..|+|..++ +.-.+..|-..|..++
T Consensus 181 ~vfpaPqG~gpyGi~atpdGsvwy-aslagnaiaridp~~~ 220 (353)
T COG4257 181 SVFPAPQGGGPYGICATPDGSVWY-ASLAGNAIARIDPFAG 220 (353)
T ss_pred eeeccCCCCCCcceEECCCCcEEE-EeccccceEEcccccC
Confidence 333221 23456788899988444 4444556767776655
No 473
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=83.20 E-value=14 Score=42.02 Aligned_cols=61 Identities=13% Similarity=0.309 Sum_probs=48.6
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC
Q 004885 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (725)
Q Consensus 608 d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~ 671 (725)
...+++.++..|-||+||--... ....+.+....|..|....+|.++||+|- ..|.+.|++
T Consensus 572 esGyIa~as~kGDirLyDRig~r-AKtalP~lG~aIk~idvta~Gk~ilaTCk--~yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKR-AKTALPGLGDAIKHIDVTANGKHILATCK--NYLLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehhhcch-hhhcCcccccceeeeEeecCCcEEEEeec--ceEEEEecc
Confidence 45689999999999999975433 34556666788999999999999998884 578788875
No 474
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=83.08 E-value=12 Score=40.44 Aligned_cols=91 Identities=13% Similarity=0.069 Sum_probs=63.4
Q ss_pred EEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEc
Q 004885 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI 702 (725)
Q Consensus 623 vWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~ 702 (725)
++|+.+++.... +. .-..+..|+. |+ +.++-+..|+|..+|.++|+........+....++|. |.+++++-+
T Consensus 189 vidv~s~evl~~---GL-smPhSPRWhd-gr-LwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmS 260 (335)
T TIGR03032 189 VIDIPSGEVVAS---GL-SMPHSPRWYQ-GK-LWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLS 260 (335)
T ss_pred EEEeCCCCEEEc---Cc-cCCcCCcEeC-Ce-EEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEec
Confidence 466666552111 11 1234456653 34 6777778899999999988877777777888999998 677777644
Q ss_pred ----C----------------CeEEEEECCCCeEEEEEe
Q 004885 703 ----E----------------NYISILDVETQVCRLKLQ 721 (725)
Q Consensus 703 ----D----------------g~V~IwDl~tg~~v~~l~ 721 (725)
+ .-|.|.|++||.+++.|+
T Consensus 261 k~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~ 299 (335)
T TIGR03032 261 KLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLR 299 (335)
T ss_pred cccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEE
Confidence 1 248899999999888765
No 475
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=82.83 E-value=39 Score=38.59 Aligned_cols=106 Identities=11% Similarity=0.136 Sum_probs=61.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-eeEEE----e-cCCCCeEEEEEccCC------CeEEEEEeC---
Q 004885 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTF----T-GHSTTVMSLDFHPSK------EDLLCSCDN--- 661 (725)
Q Consensus 597 ~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~-~l~~~----~-~h~~~V~sl~fsP~g------~~llaSgs~--- 661 (725)
-...+.|+|.|++++|++--..|.|++++..+... .+..+ . .-.+....|+|+|+- .+++++.+.
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence 45678999999998777766579999998655431 11111 1 124678999999874 345555321
Q ss_pred ------CCcEEEEECCCC--e---eEEEEec-----CCCeEEEEEecCCCEEEEEEc
Q 004885 662 ------NSEIRYWSINNG--S---CAGVFKC-----QSGATQMRFQPRLGRILAAAI 702 (725)
Q Consensus 662 ------Dg~I~IwDl~t~--~---~v~~~~~-----~~~V~sv~fspdg~~Lla~s~ 702 (725)
...|.-|.+... . ....+.. ...-..|+|.|||..+++.+.
T Consensus 109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECC
Confidence 223444544311 1 1112221 123567889999876555544
No 476
>PLN02153 epithiospecifier protein
Probab=82.55 E-value=56 Score=35.52 Aligned_cols=52 Identities=17% Similarity=0.087 Sum_probs=28.2
Q ss_pred CcEEEEECCCCeeEEEEec-----CCCeEEEEEecCCCEEEEEEcC--------------CeEEEEECCCCe
Q 004885 663 SEIRYWSINNGSCAGVFKC-----QSGATQMRFQPRLGRILAAAIE--------------NYISILDVETQV 715 (725)
Q Consensus 663 g~I~IwDl~t~~~v~~~~~-----~~~V~sv~fspdg~~Lla~s~D--------------g~V~IwDl~tg~ 715 (725)
..|.+||+.+.+....-.. .....+++. .++..++.|+.. +.|.+||+++.+
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHAV-VGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeeeEE-ECCEEEEECcccCCccccccccccccccEEEEEcCccE
Confidence 3588999987765543211 111222222 234556666641 268888987653
No 477
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.91 E-value=8.3 Score=48.27 Aligned_cols=143 Identities=14% Similarity=0.243 Sum_probs=85.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEE--------cCCCCEEEEEeCCCeEEEEECCCCCe--eeEEE
Q 004885 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF--------SPSLSRLATSSADRTVRVWDTENPDY--SLRTF 636 (725)
Q Consensus 567 g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~Iaf--------sPd~~~Lasgs~DgtIrvWDl~~~~~--~l~~~ 636 (725)
++..+|- |..+.+|+.+++.....+.+-+..|..|.. .|.=.++++.+.--.|.++-+.-... ....|
T Consensus 91 ~RaWiTi--Dn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f 168 (1311)
T KOG1900|consen 91 GRAWITI--DNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIF 168 (1311)
T ss_pred cceEEEe--CCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccc
Confidence 4444444 788999999987777777766666666653 22334455555555566664432211 11112
Q ss_pred e------cCCCCeEEEEEccCCCeEEEEEeCCCcEEE--EECCC---Ce-eE----------------EEEe--cCCCeE
Q 004885 637 T------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRY--WSINN---GS-CA----------------GVFK--CQSGAT 686 (725)
Q Consensus 637 ~------~h~~~V~sl~fsP~g~~llaSgs~Dg~I~I--wDl~t---~~-~v----------------~~~~--~~~~V~ 686 (725)
. .....|.++....+|+ +|++|- ||.|+- |.... ++ |- ..+. ...+|.
T Consensus 169 ~~~~~i~~dg~~V~~I~~t~nGR-IF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~ 246 (1311)
T KOG1900|consen 169 NTSFKISVDGVSVNCITYTENGR-IFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIR 246 (1311)
T ss_pred ccceeeecCCceEEEEEeccCCc-EEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcce
Confidence 1 2245688888777777 665655 554432 21111 11 11 1111 245789
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCC
Q 004885 687 QMRFQPRLGRILAAAIENYISILDVET 713 (725)
Q Consensus 687 sv~fspdg~~Lla~s~Dg~V~IwDl~t 713 (725)
.+..+.....+.+-+..++|.+||+..
T Consensus 247 qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 247 QITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeEeccccceeeeeccCceEEEEEccC
Confidence 999988877888888899999999986
No 478
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=80.74 E-value=1e+02 Score=34.62 Aligned_cols=105 Identities=14% Similarity=0.165 Sum_probs=58.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee----
Q 004885 600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---- 675 (725)
Q Consensus 600 V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~---- 675 (725)
...+...+++.+++.+.....++-||--...- ...-......+.++.|.+++. +++++ .+|.| +|....+..
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W-~~~~~~~~~~l~~v~~~~dg~-l~l~g-~~G~l-~~S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYW-QPHNRASARRIQNMGWRADGG-LWLLT-RGGGL-YVSKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcce-EEecCCCccceeeeeEcCCCC-EEEEe-CCceE-EEecCCCCccccc
Confidence 44456667777776665444444444422110 111222345688999999988 44343 46665 444444431
Q ss_pred -EEEEec---CCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 004885 676 -AGVFKC---QSGATQMRFQPRLGRILAAAIENYISIL 709 (725)
Q Consensus 676 -v~~~~~---~~~V~sv~fspdg~~Lla~s~Dg~V~Iw 709 (725)
...... ...++.+.|.++ +.+++++..|.|.+.
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d-~~~~a~G~~G~v~~s 353 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSK-KEAWAAGGSGILLRS 353 (398)
T ss_pred ceeecccCCCCcceEEEEEcCC-CcEEEEECCCcEEEe
Confidence 222221 234889999887 456667777766554
No 479
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=80.63 E-value=24 Score=38.54 Aligned_cols=102 Identities=13% Similarity=0.211 Sum_probs=55.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe--eeEEE----ecCCCCeEEEEEccC---CCeEEEEEeCC-------
Q 004885 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTF----TGHSTTVMSLDFHPS---KEDLLCSCDNN------- 662 (725)
Q Consensus 599 ~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~--~l~~~----~~h~~~V~sl~fsP~---g~~llaSgs~D------- 662 (725)
..+.|+|.||+++|++ ...|.|++++ ..+.. .+..+ .........++|+|+ ..+++++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999877665 5599999999 33331 22222 123456899999994 34455554422
Q ss_pred -CcEEEEECCCC-------eeE-EEEec----CCCeEEEEEecCCCEEEEEEc
Q 004885 663 -SEIRYWSINNG-------SCA-GVFKC----QSGATQMRFQPRLGRILAAAI 702 (725)
Q Consensus 663 -g~I~IwDl~t~-------~~v-~~~~~----~~~V~sv~fspdg~~Lla~s~ 702 (725)
..|.-|.+..+ +.+ ..+.. ......|.|.|||..+++.+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 13433444332 111 11121 344677999999855555544
No 480
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=79.86 E-value=11 Score=43.85 Aligned_cols=71 Identities=23% Similarity=0.205 Sum_probs=43.7
Q ss_pred CCCCEEEEEeCCCcEEEEECCC----CeEEEE--ecc--------------------CCCCeEEEEEcC----CCCEEEE
Q 004885 565 PDGKLLATGGHDKKAVLWCTES----FTVKST--LEE--------------------HTQWITDVRFSP----SLSRLAT 614 (725)
Q Consensus 565 pdg~~LaSgs~Dg~V~IWdl~~----~~~i~~--l~~--------------------H~~~V~~IafsP----d~~~Las 614 (725)
.+...|+.+..||.+....... +..... +.. -...+..++++. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3666788888899888776653 221111 111 123456667766 6789999
Q ss_pred EeCCCeEEEEECCCCCeeeEEE
Q 004885 615 SSADRTVRVWDTENPDYSLRTF 636 (725)
Q Consensus 615 gs~DgtIrvWDl~~~~~~l~~~ 636 (725)
.+.|+++|+||+.+.. ++.+.
T Consensus 236 l~~D~~LRiW~l~t~~-~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQ-CLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTC-EEEEE
T ss_pred EeCCCeEEEEECCCCe-EEEEe
Confidence 9999999999999988 54443
No 481
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=78.92 E-value=9.4 Score=44.58 Aligned_cols=73 Identities=19% Similarity=0.339 Sum_probs=43.3
Q ss_pred CCCCEEEEEeCCCeEEEEECCC---CCeeeE--EEec--------------------CCCCeEEEEEcc---CCCeEEEE
Q 004885 607 PSLSRLATSSADRTVRVWDTEN---PDYSLR--TFTG--------------------HSTTVMSLDFHP---SKEDLLCS 658 (725)
Q Consensus 607 Pd~~~Lasgs~DgtIrvWDl~~---~~~~l~--~~~~--------------------h~~~V~sl~fsP---~g~~llaS 658 (725)
++...|+.+..||.+....... ...... .+.. ....+.+++++. ++..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3666788888898887777654 111111 1111 123455666665 24457789
Q ss_pred EeCCCcEEEEECCCCeeEEEE
Q 004885 659 CDNNSEIRYWSINNGSCAGVF 679 (725)
Q Consensus 659 gs~Dg~I~IwDl~t~~~v~~~ 679 (725)
.+.|+.||+||+.++.++.+.
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999997655
No 482
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=78.70 E-value=1.2e+02 Score=34.26 Aligned_cols=206 Identities=14% Similarity=0.111 Sum_probs=104.6
Q ss_pred ccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885 475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 554 (725)
Q Consensus 475 ~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H 554 (725)
.|.-.+..-.+++.+.|. .....++..-+.||.+.+| +...+.....+..
T Consensus 124 eh~l~~~a~nm~~G~Fgg----------~~~~~~IcVQS~DG~L~~f-------------------eqe~~~f~~~lp~- 173 (418)
T PF14727_consen 124 EHSLQRTAYNMCCGPFGG----------VKGRDFICVQSMDGSLSFF-------------------EQESFAFSRFLPD- 173 (418)
T ss_pred EEecccceeEEEEEECCC----------CCCceEEEEEecCceEEEE-------------------eCCcEEEEEEcCC-
Confidence 344445555566666554 1113588889999999999 2222222223322
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--------------------Ce---EEEEeccCCCCeEEE---EEcCC
Q 004885 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTES--------------------FT---VKSTLEEHTQWITDV---RFSPS 608 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~--------------------~~---~i~~l~~H~~~V~~I---afsPd 608 (725)
.----.++|++....|++++.+..|..|.... ++ +.+++. -...|.+| .++..
T Consensus 174 ~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~ 252 (418)
T PF14727_consen 174 FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSS 252 (418)
T ss_pred CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCC
Confidence 22234577777778888888888888875421 00 011111 12223333 33322
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEE-E------ccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec
Q 004885 609 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD-F------HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 681 (725)
Q Consensus 609 ~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~-f------sP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~ 681 (725)
...+++-+ ..++.+.+.. +. ++..+.......|++ | .+.....++.++.++.+.||.=. +.+...+.
T Consensus 253 ~~~IvvLg-er~Lf~l~~~-G~--l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~--~L~WsA~l 326 (418)
T PF14727_consen 253 ESDIVVLG-ERSLFCLKDN-GS--LRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT--TLVWSAQL 326 (418)
T ss_pred CceEEEEe-cceEEEEcCC-Ce--EEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC--eEEEecCC
Confidence 22233322 3445444442 22 222222222222222 1 22323346677778999998533 33333333
Q ss_pred CCCeEEEE---EecCCCEEEEEEcCCeEEEEECCCCeEE
Q 004885 682 QSGATQMR---FQPRLGRILAAAIENYISILDVETQVCR 717 (725)
Q Consensus 682 ~~~V~sv~---fspdg~~Lla~s~Dg~V~IwDl~tg~~v 717 (725)
.....+|. |..-.+.|++-+.+|.|.+-=+.|.-.+
T Consensus 327 ~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~ 365 (418)
T PF14727_consen 327 PHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSL 365 (418)
T ss_pred CCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCCcc
Confidence 22222333 3333467778888999999888776433
No 483
>PLN02153 epithiospecifier protein
Probab=78.07 E-value=1.1e+02 Score=33.26 Aligned_cols=55 Identities=9% Similarity=0.023 Sum_probs=27.9
Q ss_pred CeEEEEECCCCCeeeEEEec----CCCCeEEEEEccCCCeEEEEEeCC--------------CcEEEEECCCCeeE
Q 004885 619 RTVRVWDTENPDYSLRTFTG----HSTTVMSLDFHPSKEDLLCSCDNN--------------SEIRYWSINNGSCA 676 (725)
Q Consensus 619 gtIrvWDl~~~~~~l~~~~~----h~~~V~sl~fsP~g~~llaSgs~D--------------g~I~IwDl~t~~~v 676 (725)
..|.+||+.+..-......+ ......++.+ +..+++.|+.. ..|.+||+.+....
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~ 289 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHAVV---GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWE 289 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeeeEEE---CCEEEEECcccCCccccccccccccccEEEEEcCccEEE
Confidence 35788888876522111111 1111122222 34577777641 25788888776554
No 484
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=77.88 E-value=35 Score=36.43 Aligned_cols=98 Identities=14% Similarity=0.163 Sum_probs=61.3
Q ss_pred CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe------CCCeEEEEECCCCCeeeEEEec-----CCCCeEE
Q 004885 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS------ADRTVRVWDTENPDYSLRTFTG-----HSTTVMS 645 (725)
Q Consensus 577 g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs------~DgtIrvWDl~~~~~~l~~~~~-----h~~~V~s 645 (725)
..|++||..+.+-...-.+-.+.|+++.|..+..+++.|. ....+..||+.+.. ...+.+ -.++|..
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~--w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT--WSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe--eeecCCcccccCCCcEEE
Confidence 3589999876544333334567899999996666666664 24578889998765 334433 2367888
Q ss_pred EEEcc-CCCeEEEEEe-CC--CcEEEEECCCCeeE
Q 004885 646 LDFHP-SKEDLLCSCD-NN--SEIRYWSINNGSCA 676 (725)
Q Consensus 646 l~fsP-~g~~llaSgs-~D--g~I~IwDl~t~~~v 676 (725)
+.+.. ++..++++|. .+ ..|..||-.....+
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i 128 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSI 128 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCceEec
Confidence 87753 3344555544 23 34777776554443
No 485
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=77.79 E-value=46 Score=41.70 Aligned_cols=154 Identities=12% Similarity=0.113 Sum_probs=81.5
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEc---------CCCCEEEEEeCCCeEEEEECCCCCeee
Q 004885 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS---------PSLSRLATSSADRTVRVWDTENPDYSL 633 (725)
Q Consensus 563 fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~Iafs---------Pd~~~Lasgs~DgtIrvWDl~~~~~~l 633 (725)
|..+++.|+.|..-+.-+|.-+.+ ..++.+.+|...+..+.|+ -.+.++++-+..|.|.+|+++.....+
T Consensus 582 f~~~~~Tl~~gnlg~~rriVQVtp-~~~rllDg~~r~lq~i~fd~~~~vv~~sv~dpyv~v~~~~g~i~~~~l~~~s~rl 660 (1366)
T KOG1896|consen 582 FTRDGPTLFAGNLGNERRIVQVTP-SGLRLLDGDLRMLQRIPFDSGAIVVQTSVADPYVAVRSSEGRITLYDLEEKSHRL 660 (1366)
T ss_pred eEeccceEEEEecCCceEEEEEcc-ceeEEecCcchheeEeccccCCcEEEEeccCceEEEEEcCCceEEEEeccccchh
Confidence 556777777776555334433322 2223344443333333332 245678888888889999998764333
Q ss_pred EEEecCCCCeEEEEEccCCCeEEEEEe-CCCcEEEEECCCC--ee----EEEEecCCCeEEEEEecCC--CEEEEEEcCC
Q 004885 634 RTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNG--SC----AGVFKCQSGATQMRFQPRL--GRILAAAIEN 704 (725)
Q Consensus 634 ~~~~~h~~~V~sl~fsP~g~~llaSgs-~Dg~I~IwDl~t~--~~----v~~~~~~~~V~sv~fspdg--~~Lla~s~Dg 704 (725)
..-..+...+.+++..++-..++.+-+ -.+....-+.+.. .. ....+...+ . .|+. -+++++..+|
T Consensus 661 ~~~~~~s~~~~sv~~~~dlsg~f~~~s~l~~k~~~~~gr~~~~~~~~~~~~kv~~~eg--g---~~~~~~~~~~~~~e~g 735 (1366)
T KOG1896|consen 661 ALHDPMSFKVVSVSLPADLSGMFTTLSDLSLKGNEANGRSSEAEGLQSLPCKVDDEEG--G---SPEQEPYWCVFVTESG 735 (1366)
T ss_pred hccCcccceeEEEechhhhccceEEEeeecccCcccccccccccccccCCccccCCCC--C---CcccCceEEEEEcCCC
Confidence 333334667788877777555554443 1111111111111 00 011111000 0 2222 4667777889
Q ss_pred eEEEEECCCCeEEEEEeC
Q 004885 705 YISILDVETQVCRLKLQV 722 (725)
Q Consensus 705 ~V~IwDl~tg~~v~~l~G 722 (725)
.+.||++....++..+..
T Consensus 736 ~leiy~~pd~~lVf~v~~ 753 (1366)
T KOG1896|consen 736 TLEIYALPDFDLVFEVDM 753 (1366)
T ss_pred ceEEEccCCcceEEEeec
Confidence 999999999988887654
No 486
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=77.27 E-value=93 Score=34.47 Aligned_cols=141 Identities=13% Similarity=0.117 Sum_probs=68.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEC--CCCeEEEEeccCC-----CCeEEEEEcCCCCEEEE-------------
Q 004885 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCT--ESFTVKSTLEEHT-----QWITDVRFSPSLSRLAT------------- 614 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl--~~~~~i~~l~~H~-----~~V~~IafsPd~~~Las------------- 614 (725)
.+.-..|+|...+.-|+.|. ...=+|.+ ..+. ...+..+. ....++.+++++...+|
T Consensus 114 CGRPLGl~f~~~ggdL~VaD--AYlGL~~V~p~g~~-a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~ 190 (376)
T KOG1520|consen 114 CGRPLGIRFDKKGGDLYVAD--AYLGLLKVGPEGGL-AELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVF 190 (376)
T ss_pred cCCcceEEeccCCCeEEEEe--cceeeEEECCCCCc-ceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEE
Confidence 35567889988776666663 33444443 3222 11111111 11223444443332222
Q ss_pred ----EeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc-EEEEECCC--CeeEEEEe-cCCCeE
Q 004885 615 ----SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-IRYWSINN--GSCAGVFK-CQSGAT 686 (725)
Q Consensus 615 ----gs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~-I~IwDl~t--~~~v~~~~-~~~~V~ 686 (725)
+..+|.+.-||..+.. .+.+...-...+.|+.+|++..++++-..-.. .++|=-.. |......+ ..+-.-
T Consensus 191 a~l~g~~~GRl~~YD~~tK~--~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PD 268 (376)
T KOG1520|consen 191 AALEGDPTGRLFRYDPSTKV--TKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPD 268 (376)
T ss_pred eeecCCCccceEEecCcccc--hhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCc
Confidence 2345666677776654 34444334456889999999866655443333 34553211 11111111 123344
Q ss_pred EEEEecCCCEEEEE
Q 004885 687 QMRFQPRLGRILAA 700 (725)
Q Consensus 687 sv~fspdg~~Lla~ 700 (725)
.|+.+.+|.+.++-
T Consensus 269 NIR~~~~G~fWVal 282 (376)
T KOG1520|consen 269 NIRRDSTGHFWVAL 282 (376)
T ss_pred ceeECCCCCEEEEE
Confidence 56666666555444
No 487
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=76.83 E-value=9.6 Score=27.26 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=23.8
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEeCC--CcEEEE
Q 004885 637 TGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYW 668 (725)
Q Consensus 637 ~~h~~~V~sl~fsP~g~~llaSgs~D--g~I~Iw 668 (725)
...........|+|||+.+++++..+ |...||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 33445678899999999999888877 776666
No 488
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=75.64 E-value=6.3 Score=44.03 Aligned_cols=163 Identities=15% Similarity=0.158 Sum_probs=93.5
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-EEEe-ccCCC----CeE-EEEEcCCCCEEEEEeCCCeEEE
Q 004885 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTL-EEHTQ----WIT-DVRFSPSLSRLATSSADRTVRV 623 (725)
Q Consensus 551 l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~-i~~l-~~H~~----~V~-~IafsPd~~~Lasgs~DgtIrv 623 (725)
+..-...|..+-..|||+.|..-+. ..+.|+++.+... .+.+ ....+ .|+ .+..-..+.-+++++.||.|.-
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ 294 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ 294 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence 4445566888999999998877654 6788888765321 1111 11111 111 1111224556788888998887
Q ss_pred E-ECCCCCe----eeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEE
Q 004885 624 W-DTENPDY----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL 698 (725)
Q Consensus 624 W-Dl~~~~~----~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Ll 698 (725)
| |++.... .++.++-....|..+.-.. .+..|++-+..|++.++.....+.+..-..-..+.-++++|++.+++
T Consensus 295 WFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll 373 (733)
T COG4590 295 WFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLL 373 (733)
T ss_pred eeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchhe
Confidence 6 6654431 1222222223333332222 23356677778888777655444433222334677889999988775
Q ss_pred EEEcCCeEEEEECCCCeE
Q 004885 699 AAAIENYISILDVETQVC 716 (725)
Q Consensus 699 a~s~Dg~V~IwDl~tg~~ 716 (725)
+ -..|.|+++.+++..+
T Consensus 374 ~-e~~gki~~~~l~Nr~P 390 (733)
T COG4590 374 S-EDQGKIRLAQLENRNP 390 (733)
T ss_pred e-ecCCceEEEEecCCCC
Confidence 4 4457899998887643
No 489
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=74.94 E-value=1e+02 Score=35.56 Aligned_cols=118 Identities=19% Similarity=0.209 Sum_probs=61.0
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCC---CeEEEEEcCCCCEEEEEe--------------CCC----
Q 004885 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ---WITDVRFSPSLSRLATSS--------------ADR---- 619 (725)
Q Consensus 561 i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~---~V~~IafsPd~~~Lasgs--------------~Dg---- 619 (725)
+.+.++|.+++..+ ..++.+|+. |+.+..+.--.. .=.++.+.|+|++|+.+. .|.
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 56677888777665 778888875 555544432121 124667778888887766 121
Q ss_pred -----eEEEEECCCCCeeeEE----------Ee---cC--CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEE
Q 004885 620 -----TVRVWDTENPDYSLRT----------FT---GH--STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679 (725)
Q Consensus 620 -----tIrvWDl~~~~~~l~~----------~~---~h--~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~ 679 (725)
.|..||+..--...+. .. .. =..+.+|.+.+....+++|+-.-..|..+|.++++....+
T Consensus 230 d~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 230 DPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp -TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred CCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence 2334444321100010 00 00 0248999999977778888876678999998888887776
Q ss_pred ec
Q 004885 680 KC 681 (725)
Q Consensus 680 ~~ 681 (725)
..
T Consensus 310 g~ 311 (477)
T PF05935_consen 310 GP 311 (477)
T ss_dssp S-
T ss_pred CC
Confidence 53
No 490
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=74.44 E-value=20 Score=43.74 Aligned_cols=94 Identities=11% Similarity=0.052 Sum_probs=62.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEE-EeCCC-----eEEEEECCCCCeeeEEEecCC
Q 004885 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADR-----TVRVWDTENPDYSLRTFTGHS 640 (725)
Q Consensus 567 g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Las-gs~Dg-----tIrvWDl~~~~~~l~~~~~h~ 640 (725)
.++.+.....+.|.+-|.+.......-..+..+|..-+|+|||+.|+- .+..+ .|.+-|+++...-+..+.-..
T Consensus 319 tkiAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~ 398 (912)
T TIGR02171 319 AKLAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVEN 398 (912)
T ss_pred eeEEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeeccc
Confidence 333333333357888888765555441346889999999999999877 44443 588889987664455555556
Q ss_pred CCeEEEEEccCCCeEEEEEe
Q 004885 641 TTVMSLDFHPSKEDLLCSCD 660 (725)
Q Consensus 641 ~~V~sl~fsP~g~~llaSgs 660 (725)
..|..-....+|...|+-.+
T Consensus 399 aaiprwrv~e~gdt~ivyv~ 418 (912)
T TIGR02171 399 AAIPRWRVLENGDTVIVYVS 418 (912)
T ss_pred ccccceEecCCCCeEEEEEc
Confidence 67777777788887665443
No 491
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=73.86 E-value=81 Score=33.91 Aligned_cols=106 Identities=8% Similarity=-0.014 Sum_probs=51.4
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCCee--eEEEecCCCCe--EEEEEccCCCeEEEEEeC-----CCcEEEEECCCC
Q 004885 608 SLSRLATSSAD-----RTVRVWDTENPDYS--LRTFTGHSTTV--MSLDFHPSKEDLLCSCDN-----NSEIRYWSINNG 673 (725)
Q Consensus 608 d~~~Lasgs~D-----gtIrvWDl~~~~~~--l~~~~~h~~~V--~sl~fsP~g~~llaSgs~-----Dg~I~IwDl~t~ 673 (725)
++.+++.|+.+ ..+..||+.+.... ...+..-.... .+++.. + ..+++.|+. ...+.+||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~-~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-D-GTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-C-CEEEEEeCcCCCccCceEEEEcCCCC
Confidence 45566666654 25666777665421 11111111111 122222 2 346666663 235888998876
Q ss_pred eeEEE--EecCCCeEEEEEecCCCEEEEEEcCC----eEEEEECCCCe
Q 004885 674 SCAGV--FKCQSGATQMRFQPRLGRILAAAIEN----YISILDVETQV 715 (725)
Q Consensus 674 ~~v~~--~~~~~~V~sv~fspdg~~Lla~s~Dg----~V~IwDl~tg~ 715 (725)
+.... +.........+...++..++.|+.++ .+.+||.++.+
T Consensus 150 ~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 150 EWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 65432 22111222222333455666666543 35688887753
No 492
>PRK13614 lipoprotein LpqB; Provisional
Probab=73.57 E-value=2e+02 Score=34.07 Aligned_cols=152 Identities=15% Similarity=0.093 Sum_probs=86.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC--eEEEEECC-CCCee
Q 004885 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTE-NPDYS 632 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~-~~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dg--tIrvWDl~-~~~~~ 632 (725)
.+...+.++++..+|....|+. .+|-...+ .....+.+ ..++.-.|.+++ .+-+...+. .|..+.-. ++...
T Consensus 344 ~~~s~avS~~g~~~A~~~~~~~-~l~~~~~g~~~~~~~~g--~~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~~ 419 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGSRT-TLYTVSPGQPARALTSG--STLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEGA 419 (573)
T ss_pred cccceeecCCCceEEEecCCCc-EEEEecCCCcceeeecC--CCccCCcccCCC-CEEEeeCCCCceEEEEecCCCcccc
Confidence 5778899999999888877762 33322222 22223333 346666788776 555554433 44443322 11100
Q ss_pred -----eEEEecCCC-CeEEEEEccCCCeEEEEEeCCCc--EEEEECC---CCeeEEEEe-----cCCCeEEEEEecCCCE
Q 004885 633 -----LRTFTGHST-TVMSLDFHPSKEDLLCSCDNNSE--IRYWSIN---NGSCAGVFK-----CQSGATQMRFQPRLGR 696 (725)
Q Consensus 633 -----l~~~~~h~~-~V~sl~fsP~g~~llaSgs~Dg~--I~IwDl~---t~~~v~~~~-----~~~~V~sv~fspdg~~ 696 (725)
........+ .|..+..+++|-.+++....+|. |+|--+. .|.+..... ....+.++.|..++..
T Consensus 420 ~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~sl 499 (573)
T PRK13614 420 QAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDSTV 499 (573)
T ss_pred cccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCCEE
Confidence 111122333 49999999999988777755665 6664432 343222111 1357899999998665
Q ss_pred EEEEEc---CCeEEEEECC
Q 004885 697 ILAAAI---ENYISILDVE 712 (725)
Q Consensus 697 Lla~s~---Dg~V~IwDl~ 712 (725)
++.+.. +-.+++..+.
T Consensus 500 ~V~~~~~~~~~~~~~v~v~ 518 (573)
T PRK13614 500 VVTKASATSNVVPELLSVD 518 (573)
T ss_pred EEEeccCCCcceEEEEEeC
Confidence 555432 2456777764
No 493
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=73.10 E-value=11 Score=27.13 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=24.7
Q ss_pred cCCCEEEEEEc-CCeEEEEECCCCeEEEEEe
Q 004885 692 PRLGRILAAAI-ENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 692 pdg~~Lla~s~-Dg~V~IwDl~tg~~v~~l~ 721 (725)
|++++|+++.. ++.|.++|+.+++.+.++.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 56777777665 7899999999999888876
No 494
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=73.02 E-value=1.4e+02 Score=32.26 Aligned_cols=11 Identities=36% Similarity=0.688 Sum_probs=8.1
Q ss_pred CCCEEEEEeCC
Q 004885 566 DGKLLATGGHD 576 (725)
Q Consensus 566 dg~~LaSgs~D 576 (725)
++++.+.|+.+
T Consensus 118 ~g~IYviGG~~ 128 (346)
T TIGR03547 118 NGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEcCcC
Confidence 67777887764
No 495
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.69 E-value=92 Score=39.33 Aligned_cols=26 Identities=8% Similarity=0.046 Sum_probs=22.9
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCeE
Q 004885 691 QPRLGRILAAAIENYISILDVETQVC 716 (725)
Q Consensus 691 spdg~~Lla~s~Dg~V~IwDl~tg~~ 716 (725)
..++..++++..||.+..||+..++.
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 77788999999999999999998855
No 496
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=72.53 E-value=62 Score=40.11 Aligned_cols=141 Identities=11% Similarity=0.070 Sum_probs=0.0
Q ss_pred cEEEEECCCCeEEEEeccCCC----CeEEEEEcC--CCCEEEEEeC-----------CCeEEEEECCCCCeeeEEEecCC
Q 004885 578 KAVLWCTESFTVKSTLEEHTQ----WITDVRFSP--SLSRLATSSA-----------DRTVRVWDTENPDYSLRTFTGHS 640 (725)
Q Consensus 578 ~V~IWdl~~~~~i~~l~~H~~----~V~~IafsP--d~~~Lasgs~-----------DgtIrvWDl~~~~~~l~~~~~h~ 640 (725)
.|+++|..+++.+..+.-..+ .|..+.|+. ...++++|.. +|.++.|++-..+..+..+....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Q ss_pred CCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC-eE
Q 004885 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISILDVETQ-VC 716 (725)
Q Consensus 641 ~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~---~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg-~~ 716 (725)
-.-.-.+.+|-..++++..+ ..+++||+-..++++..+. ...|+.++|.-. ++++|..-..|..+-.+.. ..
T Consensus 934 ~~~~v~Ai~~f~~~~LagvG--~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~--RI~VgD~qeSV~~~~y~~~~n~ 1009 (1205)
T KOG1898|consen 934 IPGPVGAICPFQGRVLAGVG--RFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGA--RIVVGDIQESVHFVRYRREDNQ 1009 (1205)
T ss_pred CCccceEEeccCCEEEEecc--cEEEEeeCChHHHHhhhhhccCceEEEEEeecce--EEEEeeccceEEEEEEecCCCe
Q ss_pred EEEEeC
Q 004885 717 RLKLQV 722 (725)
Q Consensus 717 v~~l~G 722 (725)
+..|-+
T Consensus 1010 l~~fad 1015 (1205)
T KOG1898|consen 1010 LIVFAD 1015 (1205)
T ss_pred EEEEeC
No 497
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=72.14 E-value=1.5e+02 Score=31.94 Aligned_cols=149 Identities=9% Similarity=-0.067 Sum_probs=0.0
Q ss_pred CeEEEEEcCCC-CEEEEEeCCCcEEEEECCC--CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCe--EEEEECCCCCe
Q 004885 557 KVESCHFSPDG-KLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT--VRVWDTENPDY 631 (725)
Q Consensus 557 ~V~~i~fSpdg-~~LaSgs~Dg~V~IWdl~~--~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dgt--IrvWDl~~~~~ 631 (725)
.++|..-...+ ++|+.|.++| +++.|++. .+....+. ...|+++...+....|++-+ |+. ++++++..-.
T Consensus 2 ~~~~~~~~~~~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~~--~~~v~q~~v~~~~~lLi~Ls-gk~~~L~~~~L~~L~- 76 (302)
T smart00036 2 TAKWNHPITCDGKWLLVGTEEG-LYVLNISDQPGTLEKLIG--RRSVTQIWVLEENNVLLMIS-GKKPQLYSHPLSALV- 76 (302)
T ss_pred CceEccccccCCcEEEEEeCCc-eEEEEcccCCCCeEEecC--cCceEEEEEEhhhCEEEEEe-CCcceEEEEEHHHhh-
Q ss_pred e----------------eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC---------CCeE
Q 004885 632 S----------------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---------SGAT 686 (725)
Q Consensus 632 ~----------------l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~---------~~V~ 686 (725)
. .. ..+|......++.......+++.+.....|.++.............. .++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~-~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~ 155 (302)
T smart00036 77 EKKEALGSARLVIRKNVLT-KIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVF 155 (302)
T ss_pred hhhhccCCccccccccceE-eCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccce
Q ss_pred EEEEecC--CCEEEEEEcCCeEEEEEC
Q 004885 687 QMRFQPR--LGRILAAAIENYISILDV 711 (725)
Q Consensus 687 sv~fspd--g~~Lla~s~Dg~V~IwDl 711 (725)
.+..+++ ...+++|+..+...++++
T Consensus 156 ~~~~~~~~~~~~lcvG~~~~~~~~~~~ 182 (302)
T smart00036 156 VELVSSSFERPGICIGSDKGGGDVVQF 182 (302)
T ss_pred EeeecccccceEEEEEEcCCCCeEEEE
No 498
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=72.06 E-value=1.5e+02 Score=32.09 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=14.5
Q ss_pred CCCEEEEEeCC-----------CcEEEEECCCC
Q 004885 566 DGKLLATGGHD-----------KKAVLWCTESF 587 (725)
Q Consensus 566 dg~~LaSgs~D-----------g~V~IWdl~~~ 587 (725)
++++.+.|+.+ ..+..||..+.
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~ 95 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKN 95 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCC
Confidence 67777777753 24677787653
No 499
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=71.96 E-value=3.6 Score=42.12 Aligned_cols=39 Identities=18% Similarity=0.405 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHHhcCCCCCCCCCCCC
Q 004885 9 DKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDA 47 (725)
Q Consensus 9 ~~~L~~yiydyl~k~~~~~~A~~f~~e~~~~~~~~~~~~ 47 (725)
+.-+|.-|.|||+..||.++|+.|.+|+.+..+.+.++.
T Consensus 26 ~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~ 64 (228)
T KOG2659|consen 26 REDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDS 64 (228)
T ss_pred hhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhh
No 500
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.20 E-value=3.5 Score=44.76 Aligned_cols=31 Identities=16% Similarity=0.339 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHhcCCC
Q 004885 8 ADKMLDVYIYDYLLKRKLHASAKAFQTEGKV 38 (725)
Q Consensus 8 ~~~~L~~yiydyl~k~~~~~~A~~f~~e~~~ 38 (725)
.++.||..|.|||+++||+++|.-|.++..+
T Consensus 114 ~r~~l~r~vvdhmlr~gy~~~A~~L~K~s~l 144 (389)
T KOG0396|consen 114 PRNKLDRFVVDHMLRNGYFGAAVLLGKKSQL 144 (389)
T ss_pred HHHHHHHHHHHHHHHcCchhHHHHHHHhhhh
Done!