Query 004885
Match_columns 725
No_of_seqs 668 out of 3908
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 08:47:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004885.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004885hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ynn_A Coatomer subunit beta'; 100.0 2.3E-30 7.8E-35 273.5 32.0 215 477-725 11-229 (304)
2 1vyh_C Platelet-activating fac 100.0 1.2E-29 4E-34 280.1 32.4 214 476-725 105-339 (410)
3 4gqb_B Methylosome protein 50; 100.0 2.8E-29 9.7E-34 271.6 32.6 212 481-725 84-300 (344)
4 4ery_A WD repeat-containing pr 100.0 9.5E-29 3.2E-33 260.3 35.1 214 475-724 19-234 (312)
5 2ynn_A Coatomer subunit beta'; 100.0 7.4E-29 2.5E-33 261.9 33.9 199 507-724 68-270 (304)
6 3frx_A Guanine nucleotide-bind 100.0 7.7E-29 2.6E-33 263.8 33.4 220 475-724 13-238 (319)
7 1vyh_C Platelet-activating fac 100.0 3.2E-29 1.1E-33 276.6 30.8 201 505-725 161-381 (410)
8 3ow8_A WD repeat-containing pr 100.0 5.6E-29 1.9E-33 265.8 31.7 200 505-725 91-291 (321)
9 1got_B GT-beta; complex (GTP-b 100.0 1.6E-28 5.5E-33 263.5 34.5 203 505-725 108-313 (340)
10 2pbi_B Guanine nucleotide-bind 100.0 1.5E-28 5.2E-33 265.9 34.0 233 476-725 61-327 (354)
11 3ow8_A WD repeat-containing pr 100.0 2.1E-28 7.2E-33 261.4 32.4 220 476-725 29-249 (321)
12 4gqb_B Methylosome protein 50; 100.0 2.1E-28 7.1E-33 264.8 29.1 205 477-716 125-334 (344)
13 1got_B GT-beta; complex (GTP-b 100.0 1.5E-27 5.1E-32 255.9 32.7 210 475-721 51-265 (340)
14 3f3f_A Nucleoporin SEH1; struc 100.0 3.7E-27 1.3E-31 246.7 32.3 221 474-724 6-351 (351)
15 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.4E-27 8.3E-32 255.1 31.2 200 481-712 18-224 (345)
16 1erj_A Transcriptional repress 100.0 5.3E-27 1.8E-31 256.9 33.9 208 481-725 125-353 (393)
17 4g56_B MGC81050 protein; prote 100.0 1.5E-27 5.3E-32 258.4 27.8 174 550-725 134-312 (357)
18 3iz6_a 40S ribosomal protein R 100.0 2.6E-27 8.9E-32 258.2 28.9 234 476-725 63-345 (380)
19 2pm7_B Protein transport prote 100.0 6.2E-27 2.1E-31 246.3 30.4 207 476-714 6-239 (297)
20 2hes_X YDR267CP; beta-propelle 100.0 4.9E-27 1.7E-31 251.1 30.0 219 478-724 57-294 (330)
21 4g56_B MGC81050 protein; prote 100.0 1.7E-27 6E-32 258.0 26.6 204 477-715 137-345 (357)
22 1nr0_A Actin interacting prote 100.0 5.5E-27 1.9E-31 272.2 31.6 226 477-724 57-367 (611)
23 2hes_X YDR267CP; beta-propelle 100.0 1.4E-26 4.9E-31 247.4 32.3 213 477-724 12-250 (330)
24 4ery_A WD repeat-containing pr 100.0 2.7E-26 9.3E-31 241.5 32.7 212 478-725 64-280 (312)
25 3frx_A Guanine nucleotide-bind 100.0 2.4E-26 8.2E-31 244.5 32.5 195 506-723 77-277 (319)
26 4e54_B DNA damage-binding prot 100.0 1.8E-27 6.3E-32 263.9 24.6 214 478-724 118-338 (435)
27 2xzm_R RACK1; ribosome, transl 100.0 4.2E-26 1.4E-30 244.7 34.1 222 475-720 17-252 (343)
28 3dm0_A Maltose-binding peripla 100.0 1.5E-26 5.2E-31 272.0 31.8 220 475-724 378-603 (694)
29 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.2E-26 7.6E-31 247.5 30.3 205 477-714 59-284 (345)
30 1erj_A Transcriptional repress 100.0 4.3E-26 1.5E-30 249.7 32.8 230 477-725 62-311 (393)
31 3dwl_C Actin-related protein 2 100.0 3.8E-28 1.3E-32 261.6 15.6 214 478-724 10-251 (377)
32 4aow_A Guanine nucleotide-bind 99.9 1.6E-25 5.5E-30 236.1 33.8 221 476-724 35-257 (340)
33 2pbi_B Guanine nucleotide-bind 99.9 6E-26 2.1E-30 245.5 30.8 197 478-710 153-354 (354)
34 3zwl_B Eukaryotic translation 99.9 3.6E-25 1.2E-29 235.0 35.2 216 474-725 27-316 (369)
35 3ei3_B DNA damage-binding prot 99.9 4.9E-26 1.7E-30 246.3 28.4 214 477-724 71-293 (383)
36 1nr0_A Actin interacting prote 99.9 8.2E-26 2.8E-30 262.3 31.7 205 482-723 21-280 (611)
37 3vl1_A 26S proteasome regulato 99.9 3E-26 1E-30 250.0 26.2 199 505-724 108-334 (420)
38 1k8k_C P40, ARP2/3 complex 41 99.9 1.5E-25 5.2E-30 239.3 30.4 214 478-724 7-244 (372)
39 1gxr_A ESG1, transducin-like e 99.9 6.3E-25 2.2E-29 230.5 33.3 213 477-724 49-265 (337)
40 3dw8_B Serine/threonine-protei 99.9 6.8E-26 2.3E-30 249.0 25.5 222 478-724 27-327 (447)
41 2xzm_R RACK1; ribosome, transl 99.9 3.4E-25 1.2E-29 237.6 29.8 201 478-717 75-289 (343)
42 2pm7_B Protein transport prote 99.9 2.9E-25 9.9E-30 233.5 28.3 189 507-712 68-284 (297)
43 3dm0_A Maltose-binding peripla 99.9 2.6E-25 8.8E-30 261.5 31.0 211 476-723 427-642 (694)
44 3bg1_A Protein SEC13 homolog; 99.9 3.2E-26 1.1E-30 243.2 20.7 206 476-713 10-247 (316)
45 4h5i_A Guanine nucleotide-exch 99.9 2.4E-25 8.2E-30 242.1 27.6 209 481-724 135-362 (365)
46 4aez_A CDC20, WD repeat-contai 99.9 9.4E-25 3.2E-29 239.0 32.3 211 478-725 133-350 (401)
47 2ymu_A WD-40 repeat protein; u 99.9 6.4E-25 2.2E-29 250.0 32.0 195 505-725 355-550 (577)
48 3iz6_a 40S ribosomal protein R 99.9 2.5E-25 8.7E-30 242.5 27.4 188 507-715 171-377 (380)
49 3jrp_A Fusion protein of prote 99.9 9.9E-25 3.4E-29 232.8 30.6 207 475-714 7-241 (379)
50 1gxr_A ESG1, transducin-like e 99.9 4.3E-24 1.5E-28 224.1 34.5 209 478-721 96-304 (337)
51 2pm9_A Protein WEB1, protein t 99.9 1.4E-25 4.7E-30 243.8 23.6 218 477-725 65-306 (416)
52 2aq5_A Coronin-1A; WD40 repeat 99.9 4.7E-25 1.6E-29 241.0 27.4 219 476-723 78-310 (402)
53 1r5m_A SIR4-interacting protei 99.9 1.6E-24 5.4E-29 234.6 30.6 208 479-724 108-392 (425)
54 3mmy_A MRNA export factor; mRN 99.9 2.6E-24 8.7E-29 228.3 30.9 221 474-725 34-316 (368)
55 2ymu_A WD-40 repeat protein; u 99.9 1.1E-24 3.9E-29 247.9 29.6 181 505-710 396-577 (577)
56 3mkq_A Coatomer beta'-subunit; 99.9 1.3E-24 4.4E-29 257.9 30.5 216 476-725 10-229 (814)
57 3vl1_A 26S proteasome regulato 99.9 2.1E-25 7.1E-30 243.4 21.5 202 484-722 61-287 (420)
58 3gre_A Serine/threonine-protei 99.9 6.4E-25 2.2E-29 241.8 25.0 218 476-724 60-303 (437)
59 1sq9_A Antiviral protein SKI8; 99.9 1.2E-24 4.1E-29 235.2 26.7 216 477-721 60-330 (397)
60 1sq9_A Antiviral protein SKI8; 99.9 9.8E-25 3.4E-29 235.9 25.7 215 475-722 12-276 (397)
61 3k26_A Polycomb protein EED; W 99.9 8.5E-25 2.9E-29 232.2 23.8 212 478-723 68-332 (366)
62 3bg1_A Protein SEC13 homolog; 99.9 5.6E-25 1.9E-29 233.6 22.1 201 506-723 71-306 (316)
63 3v7d_B Cell division control p 99.9 1.1E-23 3.9E-28 233.6 33.5 195 508-725 134-353 (464)
64 1r5m_A SIR4-interacting protei 99.9 1.1E-23 3.6E-28 228.1 31.6 219 476-724 42-330 (425)
65 3i2n_A WD repeat-containing pr 99.9 1.3E-24 4.3E-29 230.4 23.7 216 476-724 15-259 (357)
66 3ei3_B DNA damage-binding prot 99.9 2.8E-24 9.6E-29 232.4 26.8 211 477-723 116-349 (383)
67 3k26_A Polycomb protein EED; W 99.9 3.1E-24 1.1E-28 227.9 26.2 221 473-724 12-285 (366)
68 4gga_A P55CDC, cell division c 99.9 2.2E-23 7.6E-28 229.8 34.0 200 505-725 158-365 (420)
69 2xyi_A Probable histone-bindin 99.9 2.5E-24 8.7E-29 238.5 26.1 225 477-724 126-378 (430)
70 2j04_B YDR362CP, TAU91; beta p 99.9 4.9E-25 1.7E-29 252.1 20.8 204 506-725 173-398 (524)
71 3dw8_B Serine/threonine-protei 99.9 2.5E-24 8.7E-29 236.4 25.5 227 480-723 94-382 (447)
72 3jrp_A Fusion protein of prote 99.9 7.1E-24 2.4E-28 226.2 28.2 207 478-714 54-288 (379)
73 2oaj_A Protein SNI1; WD40 repe 99.9 3.4E-24 1.2E-28 260.3 28.7 206 476-719 14-248 (902)
74 3sfz_A APAF-1, apoptotic pepti 99.9 9.7E-24 3.3E-28 262.8 32.7 214 476-725 612-883 (1249)
75 2aq5_A Coronin-1A; WD40 repeat 99.9 2.3E-24 7.9E-29 235.5 23.7 192 508-716 49-257 (402)
76 1yfq_A Cell cycle arrest prote 99.9 1.1E-23 3.9E-28 222.4 27.9 214 476-723 8-292 (342)
77 3odt_A Protein DOA1; ubiquitin 99.9 2.3E-23 7.7E-28 216.6 29.7 169 546-724 95-266 (313)
78 1k8k_C P40, ARP2/3 complex 41 99.9 1.2E-23 4.1E-28 224.6 28.1 201 478-713 51-274 (372)
79 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.2E-23 4.2E-28 233.9 27.8 210 479-723 102-354 (450)
80 2j04_B YDR362CP, TAU91; beta p 99.9 2.2E-24 7.5E-29 246.7 22.2 215 479-713 207-428 (524)
81 4a11_B DNA excision repair pro 99.9 1.4E-23 4.7E-28 226.3 27.1 218 476-721 40-284 (408)
82 1pgu_A Actin interacting prote 99.9 1.4E-23 4.9E-28 239.4 28.6 212 479-724 18-253 (615)
83 4aez_A CDC20, WD repeat-contai 99.9 2.7E-23 9.2E-28 227.4 29.6 194 508-723 105-303 (401)
84 2xyi_A Probable histone-bindin 99.9 2.9E-23 9.9E-28 230.0 29.9 212 477-714 179-411 (430)
85 3gre_A Serine/threonine-protei 99.9 2.5E-24 8.5E-29 237.0 21.1 208 507-724 124-370 (437)
86 2pm9_A Protein WEB1, protein t 99.9 7E-24 2.4E-28 230.3 23.6 214 478-716 112-340 (416)
87 3mkq_A Coatomer beta'-subunit; 99.9 3E-23 1E-27 246.1 31.1 212 477-724 53-270 (814)
88 3odt_A Protein DOA1; ubiquitin 99.9 5.8E-23 2E-27 213.5 29.3 167 546-719 133-302 (313)
89 3i2n_A WD repeat-containing pr 99.9 8.9E-24 3.1E-28 223.9 23.6 199 506-725 80-322 (357)
90 4h5i_A Guanine nucleotide-exch 99.9 4.8E-23 1.6E-27 223.9 29.5 169 554-725 132-313 (365)
91 4aow_A Guanine nucleotide-bind 99.9 1.1E-22 3.9E-27 214.2 30.6 207 479-722 86-295 (340)
92 3dwl_C Actin-related protein 2 99.9 3.4E-24 1.2E-28 230.6 19.2 202 477-712 53-280 (377)
93 3zwl_B Eukaryotic translation 99.9 7.6E-23 2.6E-27 217.0 29.0 166 548-716 166-349 (369)
94 1pgu_A Actin interacting prote 99.9 7.7E-23 2.6E-27 233.4 31.1 215 478-723 62-293 (615)
95 1p22_A F-BOX/WD-repeat protein 99.9 1.4E-22 4.9E-27 224.1 31.7 191 507-725 144-337 (435)
96 3f3f_A Nucleoporin SEH1; struc 99.9 3.6E-23 1.2E-27 216.4 25.2 165 549-714 5-250 (351)
97 2vdu_B TRNA (guanine-N(7)-)-me 99.9 5.3E-23 1.8E-27 228.8 28.1 171 551-723 98-281 (450)
98 4a11_B DNA excision repair pro 99.9 1.3E-22 4.5E-27 218.6 30.2 210 478-722 98-374 (408)
99 3jro_A Fusion protein of prote 99.9 2.1E-23 7.1E-28 248.4 25.5 208 475-715 5-240 (753)
100 3v7d_B Cell division control p 99.9 2.5E-22 8.6E-27 222.8 31.1 212 505-723 216-432 (464)
101 3lrv_A PRE-mRNA-splicing facto 99.9 9.3E-23 3.2E-27 218.4 25.4 227 473-714 49-293 (343)
102 2j04_A TAU60, YPL007P, hypothe 99.9 1.1E-22 3.6E-27 231.3 27.1 216 480-725 16-266 (588)
103 2ovr_B FBW7, F-BOX/WD repeat p 99.9 4.6E-22 1.6E-26 220.2 31.6 190 507-725 130-320 (445)
104 4gga_A P55CDC, cell division c 99.9 8.7E-22 3E-26 217.0 33.6 196 508-724 118-321 (420)
105 4e54_B DNA damage-binding prot 99.9 3.9E-23 1.3E-27 229.1 22.5 198 507-723 178-397 (435)
106 2w18_A PALB2, fancn, partner a 99.9 9.9E-23 3.4E-27 218.8 23.4 162 546-711 169-355 (356)
107 4gq1_A NUP37; propeller, trans 99.9 2.5E-23 8.4E-28 228.2 18.7 207 503-724 98-359 (393)
108 1p22_A F-BOX/WD-repeat protein 99.9 4.1E-22 1.4E-26 220.4 28.0 192 505-725 182-386 (435)
109 4ggc_A P55CDC, cell division c 99.9 2.6E-21 8.9E-26 201.8 32.5 202 503-725 76-285 (318)
110 3lrv_A PRE-mRNA-splicing facto 99.9 7.4E-23 2.5E-27 219.1 18.3 191 504-721 46-252 (343)
111 2ovr_B FBW7, F-BOX/WD repeat p 99.9 5E-21 1.7E-25 211.9 32.2 186 506-720 209-398 (445)
112 3jro_A Fusion protein of prote 99.9 4E-22 1.4E-26 237.3 23.6 207 478-714 52-286 (753)
113 3vu4_A KMHSV2; beta-propeller 99.9 2.3E-21 7.9E-26 209.5 27.4 198 478-714 18-272 (355)
114 2oaj_A Protein SNI1; WD40 repe 99.9 8.7E-22 3E-26 239.1 24.5 207 501-724 442-743 (902)
115 1l0q_A Surface layer protein; 99.9 1.9E-20 6.7E-25 202.2 32.1 207 481-724 33-244 (391)
116 2j04_A TAU60, YPL007P, hypothe 99.9 2.6E-21 8.7E-26 219.9 24.7 190 479-712 85-296 (588)
117 3sfz_A APAF-1, apoptotic pepti 99.9 6.2E-21 2.1E-25 237.6 30.3 173 549-722 609-783 (1249)
118 4ggc_A P55CDC, cell division c 99.9 2.9E-20 9.8E-25 193.9 30.2 195 508-723 38-240 (318)
119 3mmy_A MRNA export factor; mRN 99.9 1.9E-21 6.4E-26 206.1 21.4 191 505-716 97-352 (368)
120 3bws_A Protein LP49; two-domai 99.9 2.9E-20 9.9E-25 203.7 30.7 197 506-724 181-401 (433)
121 4gq1_A NUP37; propeller, trans 99.9 2.4E-21 8.1E-26 212.4 21.1 207 477-711 134-387 (393)
122 1l0q_A Surface layer protein; 99.9 3.5E-20 1.2E-24 200.2 29.9 194 507-723 3-199 (391)
123 2w18_A PALB2, fancn, partner a 99.9 3.3E-20 1.1E-24 199.2 25.5 169 553-724 109-325 (356)
124 3bws_A Protein LP49; two-domai 99.8 7.3E-20 2.5E-24 200.5 25.4 202 505-722 133-343 (433)
125 3vu4_A KMHSV2; beta-propeller 99.8 4.5E-20 1.5E-24 199.4 23.1 151 560-714 142-337 (355)
126 1yfq_A Cell cycle arrest prote 99.8 1E-19 3.6E-24 191.9 25.4 188 507-710 113-321 (342)
127 2hqs_A Protein TOLB; TOLB, PAL 99.8 4.1E-18 1.4E-22 188.4 29.2 207 479-725 178-398 (415)
128 2oit_A Nucleoporin 214KDA; NH2 99.8 3.5E-19 1.2E-23 198.7 20.3 159 553-714 90-279 (434)
129 1nir_A Nitrite reductase; hemo 99.8 2.3E-17 7.9E-22 189.3 29.1 194 507-722 150-364 (543)
130 2hqs_A Protein TOLB; TOLB, PAL 99.8 1.8E-17 6.1E-22 183.3 25.4 171 549-723 172-353 (415)
131 3vgz_A Uncharacterized protein 99.8 1.9E-16 6.6E-21 167.6 30.6 164 558-723 143-313 (353)
132 2ojh_A Uncharacterized protein 99.8 2E-17 6.8E-22 169.0 21.0 209 479-724 41-271 (297)
133 1pby_B Quinohemoprotein amine 99.7 1.9E-16 6.3E-21 166.0 25.1 190 508-723 48-320 (337)
134 3u4y_A Uncharacterized protein 99.7 2.9E-16 9.9E-21 165.4 26.2 196 508-722 54-263 (331)
135 1nir_A Nitrite reductase; hemo 99.7 5.2E-16 1.8E-20 178.1 29.5 200 506-724 190-420 (543)
136 2oit_A Nucleoporin 214KDA; NH2 99.7 1.1E-16 3.7E-21 178.5 22.1 209 479-712 92-332 (434)
137 2ojh_A Uncharacterized protein 99.7 1E-16 3.5E-21 163.7 20.2 192 510-723 16-215 (297)
138 1ri6_A Putative isomerase YBHE 99.7 9E-16 3.1E-20 161.2 26.9 199 507-723 50-276 (343)
139 3u4y_A Uncharacterized protein 99.7 7.7E-16 2.6E-20 162.2 26.3 196 506-723 10-220 (331)
140 1ri6_A Putative isomerase YBHE 99.7 2.1E-15 7.1E-20 158.4 28.3 197 508-721 97-320 (343)
141 3vgz_A Uncharacterized protein 99.7 4.6E-15 1.6E-19 156.9 29.3 166 556-723 89-272 (353)
142 1jmx_B Amine dehydrogenase; ox 99.7 1.8E-15 6.3E-20 159.5 24.4 159 557-723 93-335 (349)
143 2ecf_A Dipeptidyl peptidase IV 99.7 6.4E-16 2.2E-20 181.9 21.7 224 479-723 36-331 (741)
144 1xfd_A DIP, dipeptidyl aminope 99.7 2.2E-16 7.4E-21 185.2 16.2 203 482-722 19-298 (723)
145 1pby_B Quinohemoprotein amine 99.7 7.5E-15 2.6E-19 153.7 25.0 191 507-723 2-279 (337)
146 3hfq_A Uncharacterized protein 99.7 4.1E-14 1.4E-18 150.6 30.5 163 555-717 140-323 (347)
147 3hfq_A Uncharacterized protein 99.7 2.4E-14 8.2E-19 152.3 27.0 178 546-723 76-284 (347)
148 2ecf_A Dipeptidyl peptidase IV 99.6 3E-15 1E-19 176.1 19.4 206 482-724 111-378 (741)
149 1jmx_B Amine dehydrogenase; ox 99.6 2.8E-14 9.5E-19 150.4 24.9 194 503-722 8-293 (349)
150 2z3z_A Dipeptidyl aminopeptida 99.6 3.2E-14 1.1E-18 166.6 23.9 162 553-715 255-437 (706)
151 3scy_A Hypothetical bacterial 99.6 1.6E-13 5.6E-18 146.9 27.4 165 554-718 153-344 (361)
152 2z3z_A Dipeptidyl aminopeptida 99.6 1.4E-14 4.9E-19 169.5 19.5 205 480-724 82-354 (706)
153 1k32_A Tricorn protease; prote 99.6 4.3E-14 1.5E-18 173.9 23.0 164 554-724 294-471 (1045)
154 3scy_A Hypothetical bacterial 99.6 6.9E-13 2.4E-17 142.0 27.7 199 506-721 61-303 (361)
155 1xfd_A DIP, dipeptidyl aminope 99.6 2.7E-14 9.4E-19 167.3 18.1 200 482-715 63-347 (723)
156 1k32_A Tricorn protease; prote 99.6 6.2E-14 2.1E-18 172.5 21.6 195 481-714 297-503 (1045)
157 3o4h_A Acylamino-acid-releasin 99.6 1E-13 3.5E-18 158.9 21.1 201 480-724 22-237 (582)
158 1jof_A Carboxy-CIS,CIS-muconat 99.5 1.3E-12 4.4E-17 141.0 26.7 193 508-718 53-297 (365)
159 1z68_A Fibroblast activation p 99.5 9.7E-15 3.3E-19 171.5 9.7 199 484-720 20-298 (719)
160 3o4h_A Acylamino-acid-releasin 99.5 1.9E-13 6.5E-18 156.7 19.8 146 559-713 153-315 (582)
161 1jof_A Carboxy-CIS,CIS-muconat 99.5 7.6E-12 2.6E-16 135.0 28.4 161 554-714 143-342 (365)
162 4a5s_A Dipeptidyl peptidase 4 99.5 3.5E-13 1.2E-17 159.6 18.9 195 483-715 20-296 (740)
163 3pe7_A Oligogalacturonate lyas 99.5 3.1E-12 1.1E-16 137.5 22.1 171 550-722 75-284 (388)
164 3fvz_A Peptidyl-glycine alpha- 99.4 1.8E-11 6.2E-16 130.3 26.6 166 553-721 88-285 (329)
165 2oiz_A Aromatic amine dehydrog 99.4 1.9E-11 6.6E-16 132.4 26.8 163 556-722 108-345 (361)
166 1z68_A Fibroblast activation p 99.4 3E-13 1E-17 158.8 12.9 158 556-715 110-348 (719)
167 1q7f_A NHL, brain tumor CG1071 99.4 5.4E-11 1.8E-15 122.9 27.9 194 507-723 42-247 (286)
168 3azo_A Aminopeptidase; POP fam 99.4 3.7E-12 1.2E-16 147.9 21.0 167 554-724 128-335 (662)
169 2dg1_A DRP35, lactonase; beta 99.4 9.2E-11 3.1E-15 123.7 29.3 193 508-722 58-271 (333)
170 1q7f_A NHL, brain tumor CG1071 99.4 5.8E-11 2E-15 122.7 25.5 155 554-714 119-281 (286)
171 3no2_A Uncharacterized protein 99.4 2.8E-11 9.6E-16 126.5 23.3 191 506-722 5-204 (276)
172 3azo_A Aminopeptidase; POP fam 99.4 5.5E-12 1.9E-16 146.4 19.5 161 560-722 81-283 (662)
173 3e5z_A Putative gluconolactona 99.4 6.8E-11 2.3E-15 123.1 25.2 205 478-724 26-256 (296)
174 3fvz_A Peptidyl-glycine alpha- 99.4 6.6E-11 2.3E-15 125.9 24.3 166 555-721 23-235 (329)
175 3pe7_A Oligogalacturonate lyas 99.4 2.1E-11 7.2E-16 131.0 19.9 168 547-715 22-227 (388)
176 2dg1_A DRP35, lactonase; beta 99.4 3.9E-11 1.3E-15 126.6 21.5 164 548-713 37-213 (333)
177 2xdw_A Prolyl endopeptidase; a 99.4 6.5E-11 2.2E-15 139.4 25.7 165 558-723 173-378 (710)
178 1qks_A Cytochrome CD1 nitrite 99.3 4.9E-10 1.7E-14 129.0 30.5 194 507-722 168-382 (567)
179 3c5m_A Oligogalacturonate lyas 99.3 1.2E-11 4.2E-16 132.7 12.9 159 558-718 83-278 (396)
180 4a5s_A Dipeptidyl peptidase 4 99.3 2.3E-11 7.7E-16 144.1 16.1 141 556-702 17-190 (740)
181 1rwi_B Serine/threonine-protei 99.3 4.1E-10 1.4E-14 114.6 21.9 158 556-716 67-225 (270)
182 2gop_A Trilobed protease; beta 99.3 2.3E-10 7.8E-15 121.1 20.6 150 558-720 106-298 (347)
183 1rwi_B Serine/threonine-protei 99.2 3.5E-10 1.2E-14 115.2 19.9 158 556-715 108-266 (270)
184 3c5m_A Oligogalacturonate lyas 99.2 1E-10 3.5E-15 125.4 16.6 151 561-716 147-332 (396)
185 1xip_A Nucleoporin NUP159; bet 99.2 1.6E-10 5.6E-15 126.6 17.6 134 553-700 86-231 (388)
186 2bkl_A Prolyl endopeptidase; m 99.2 4.6E-10 1.6E-14 131.9 22.2 205 480-723 121-360 (695)
187 2oiz_A Aromatic amine dehydrog 99.2 6E-10 2E-14 120.6 21.3 171 548-723 44-305 (361)
188 3e5z_A Putative gluconolactona 99.2 1.5E-09 5.2E-14 112.8 23.1 156 556-718 115-291 (296)
189 1xip_A Nucleoporin NUP159; bet 99.2 1.5E-10 5.2E-15 126.8 16.1 149 557-720 39-200 (388)
190 3dsm_A Uncharacterized protein 99.2 1.8E-09 6.2E-14 115.0 22.3 183 507-716 55-256 (328)
191 1qks_A Cytochrome CD1 nitrite 99.2 1.4E-08 4.9E-13 116.8 31.3 199 506-722 208-437 (567)
192 2xdw_A Prolyl endopeptidase; a 99.2 5.4E-10 1.9E-14 131.5 19.7 160 554-715 123-322 (710)
193 2mad_H Methylamine dehydrogena 99.2 7.9E-09 2.7E-13 112.7 27.4 170 547-720 59-357 (373)
194 3g4e_A Regucalcin; six bladed 99.1 1.8E-08 6E-13 105.4 28.2 193 507-723 26-239 (297)
195 1pjx_A Dfpase, DIISOPROPYLFLUO 99.1 5.9E-09 2E-13 108.4 24.4 165 554-723 69-266 (314)
196 2z2n_A Virginiamycin B lyase; 99.1 3.3E-08 1.1E-12 101.4 29.5 160 554-717 55-216 (299)
197 2gop_A Trilobed protease; beta 99.1 1.4E-09 4.9E-14 114.9 19.6 152 557-724 172-340 (347)
198 3dsm_A Uncharacterized protein 99.1 4.2E-09 1.4E-13 112.2 22.4 157 557-721 132-309 (328)
199 2z2n_A Virginiamycin B lyase; 99.1 6.3E-08 2.2E-12 99.2 30.1 156 554-715 97-256 (299)
200 2bkl_A Prolyl endopeptidase; m 99.1 7.7E-10 2.6E-14 130.0 16.9 159 553-715 118-306 (695)
201 3no2_A Uncharacterized protein 99.1 5E-09 1.7E-13 109.3 18.8 151 566-723 4-164 (276)
202 2ghs_A AGR_C_1268P; regucalcin 99.0 1.3E-07 4.3E-12 100.6 29.1 162 555-723 89-269 (326)
203 3hrp_A Uncharacterized protein 99.0 4.8E-08 1.6E-12 107.7 26.0 161 561-723 176-363 (409)
204 1mda_H Methylamine dehydrogena 99.0 7.1E-09 2.4E-13 113.0 18.4 178 544-723 55-356 (368)
205 3c75_H MADH, methylamine dehyd 99.0 1E-08 3.6E-13 113.7 19.7 174 544-720 108-409 (426)
206 2qc5_A Streptogramin B lactona 99.0 4.2E-07 1.4E-11 93.1 29.4 159 553-717 59-221 (300)
207 1yr2_A Prolyl oligopeptidase; 99.0 2.4E-08 8.1E-13 118.2 22.6 162 558-722 211-403 (741)
208 1yr2_A Prolyl oligopeptidase; 99.0 1E-08 3.5E-13 121.4 19.4 166 554-722 161-361 (741)
209 2qc5_A Streptogramin B lactona 99.0 5.6E-07 1.9E-11 92.1 29.5 158 554-716 102-262 (300)
210 2hz6_A Endoplasmic reticulum t 98.9 1.2E-10 4.2E-15 126.6 1.4 187 506-721 9-200 (369)
211 1pjx_A Dfpase, DIISOPROPYLFLUO 98.9 8.1E-08 2.8E-12 99.7 21.9 155 556-713 117-299 (314)
212 3iuj_A Prolyl endopeptidase; h 98.9 5.5E-08 1.9E-12 114.3 22.0 153 559-715 178-361 (693)
213 3dr2_A Exported gluconolactona 98.9 2.9E-07 9.9E-12 96.4 23.8 204 477-722 42-275 (305)
214 3g4e_A Regucalcin; six bladed 98.8 3.4E-07 1.2E-11 95.6 23.5 145 556-702 98-261 (297)
215 3hrp_A Uncharacterized protein 98.8 4.2E-07 1.4E-11 100.2 25.3 155 554-712 217-409 (409)
216 3iuj_A Prolyl endopeptidase; h 98.8 5.2E-08 1.8E-12 114.6 17.5 160 553-716 126-317 (693)
217 1npe_A Nidogen, entactin; glyc 98.8 7.5E-06 2.6E-10 83.7 29.9 162 556-721 79-246 (267)
218 3dr2_A Exported gluconolactona 98.7 5.9E-07 2E-11 94.0 20.6 159 550-715 39-226 (305)
219 2ece_A 462AA long hypothetical 98.7 1.7E-06 5.7E-11 95.8 24.1 200 505-721 95-363 (462)
220 3sjl_D Methylamine dehydrogena 98.7 5.9E-07 2E-11 98.2 19.2 152 561-717 38-213 (386)
221 3sjl_D Methylamine dehydrogena 98.7 1.5E-06 5.3E-11 94.8 22.4 155 566-721 188-371 (386)
222 2ghs_A AGR_C_1268P; regucalcin 98.7 5E-06 1.7E-10 88.1 25.8 143 556-703 134-292 (326)
223 2hz6_A Endoplasmic reticulum t 98.6 2.4E-09 8.3E-14 116.3 -0.9 148 566-721 8-157 (369)
224 2mad_H Methylamine dehydrogena 98.6 2E-06 6.9E-11 93.5 21.9 148 563-718 28-200 (373)
225 1yiq_A Quinohemoprotein alcoho 98.6 2.3E-06 7.8E-11 100.7 23.9 164 559-723 238-515 (689)
226 2qe8_A Uncharacterized protein 98.6 1.6E-06 5.6E-11 92.5 20.4 164 553-717 64-282 (343)
227 2qe8_A Uncharacterized protein 98.6 1.4E-06 4.9E-11 93.0 19.9 153 556-710 17-223 (343)
228 1kb0_A Quinohemoprotein alcoho 98.6 3.4E-06 1.2E-10 99.0 24.1 165 558-723 245-517 (677)
229 1fwx_A Nitrous oxide reductase 98.6 1.3E-06 4.4E-11 99.7 19.0 165 556-723 134-381 (595)
230 2iwa_A Glutamine cyclotransfer 98.5 9.9E-06 3.4E-10 84.0 22.1 170 543-721 7-189 (266)
231 2ece_A 462AA long hypothetical 98.5 8.3E-06 2.8E-10 90.2 22.5 144 558-701 190-399 (462)
232 2iwa_A Glutamine cyclotransfer 98.5 3.2E-05 1.1E-09 80.2 25.0 148 560-714 70-238 (266)
233 3nol_A Glutamine cyclotransfer 98.4 1E-05 3.5E-10 83.4 19.5 170 543-722 29-210 (262)
234 1npe_A Nidogen, entactin; glyc 98.4 6.5E-05 2.2E-09 76.7 24.4 160 557-718 37-203 (267)
235 3c75_H MADH, methylamine dehyd 98.4 5.6E-06 1.9E-10 91.7 16.8 146 565-716 82-251 (426)
236 2fp8_A Strictosidine synthase; 98.4 0.00011 3.7E-09 77.3 26.1 160 557-722 81-277 (322)
237 3nok_A Glutaminyl cyclase; bet 98.3 9.7E-06 3.3E-10 83.7 16.8 152 558-721 57-218 (268)
238 3mbr_X Glutamine cyclotransfer 98.3 4E-05 1.4E-09 78.2 20.9 168 543-721 7-187 (243)
239 3hxj_A Pyrrolo-quinoline quino 98.3 2.6E-05 8.8E-10 81.2 18.8 156 554-721 135-291 (330)
240 3nol_A Glutamine cyclotransfer 98.3 9.3E-05 3.2E-09 76.2 22.1 131 566-702 95-244 (262)
241 1mda_H Methylamine dehydrogena 98.2 1.1E-05 3.7E-10 87.7 14.9 89 603-693 269-367 (368)
242 3q7m_A Lipoprotein YFGL, BAMB; 98.2 0.00013 4.3E-09 78.2 22.3 147 566-720 102-265 (376)
243 1yiq_A Quinohemoprotein alcoho 98.2 7.2E-05 2.5E-09 87.9 22.0 148 575-723 181-474 (689)
244 1kv9_A Type II quinohemoprotei 98.2 3.3E-05 1.1E-09 90.5 19.0 165 558-723 232-498 (668)
245 1kb0_A Quinohemoprotein alcoho 98.1 6E-05 2.1E-09 88.4 20.0 145 576-721 189-474 (677)
246 1ijq_A LDL receptor, low-densi 98.1 0.0025 8.4E-08 67.1 29.8 162 556-721 77-246 (316)
247 3nok_A Glutaminyl cyclase; bet 98.1 0.00018 6E-09 74.3 19.4 171 506-702 65-254 (268)
248 1fwx_A Nitrous oxide reductase 98.1 3.6E-05 1.2E-09 87.8 15.7 147 566-714 100-309 (595)
249 2fp8_A Strictosidine synthase; 98.1 0.00024 8.1E-09 74.6 21.1 153 557-713 20-216 (322)
250 3q7m_A Lipoprotein YFGL, BAMB; 98.1 0.00013 4.5E-09 78.0 19.2 148 566-721 52-215 (376)
251 3hxj_A Pyrrolo-quinoline quino 98.1 0.0001 3.6E-09 76.5 17.8 150 554-714 175-325 (330)
252 2p4o_A Hypothetical protein; p 98.0 0.00074 2.5E-08 70.5 23.9 158 556-716 72-244 (306)
253 2ad6_A Methanol dehydrogenase 98.0 0.00039 1.3E-08 79.9 23.0 161 560-722 239-503 (571)
254 3v65_B Low-density lipoprotein 98.0 0.0014 5E-08 71.1 26.2 162 557-721 160-326 (386)
255 3mbr_X Glutamine cyclotransfer 98.0 0.0013 4.5E-08 66.9 23.9 129 568-702 76-223 (243)
256 3v64_C Agrin; beta propeller, 98.0 0.0023 7.8E-08 68.5 27.1 162 556-721 116-283 (349)
257 3qqz_A Putative uncharacterize 98.0 0.0026 8.8E-08 65.4 25.5 155 556-712 70-252 (255)
258 3v64_C Agrin; beta propeller, 97.9 0.0022 7.4E-08 68.7 25.0 158 556-714 73-235 (349)
259 3p5b_L Low density lipoprotein 97.9 0.0072 2.5E-07 66.0 29.4 165 554-721 157-328 (400)
260 1ijq_A LDL receptor, low-densi 97.9 0.0041 1.4E-07 65.4 26.4 158 555-714 29-196 (316)
261 3qqz_A Putative uncharacterize 97.9 0.0037 1.3E-07 64.2 24.9 171 549-721 20-211 (255)
262 3v65_B Low-density lipoprotein 97.8 0.0019 6.4E-08 70.2 22.8 159 555-714 115-278 (386)
263 3sov_A LRP-6, low-density lipo 97.8 0.0069 2.4E-07 64.0 26.7 163 556-721 79-246 (318)
264 2p9w_A MAL S 1 allergenic prot 97.8 0.0016 5.4E-08 69.3 21.3 162 550-714 7-216 (334)
265 3tc9_A Hypothetical hydrolase; 97.8 0.00072 2.5E-08 74.7 19.3 154 557-712 138-300 (430)
266 1kv9_A Type II quinohemoprotei 97.8 0.00064 2.2E-08 79.5 19.7 153 567-721 117-341 (668)
267 1flg_A Protein (quinoprotein e 97.8 0.0016 5.4E-08 75.0 22.5 161 560-722 250-525 (582)
268 2xe4_A Oligopeptidase B; hydro 97.8 0.00026 8.7E-09 84.0 16.2 153 557-713 175-354 (751)
269 3p5b_L Low density lipoprotein 97.8 0.0057 1.9E-07 66.8 25.8 161 554-715 110-279 (400)
270 2p4o_A Hypothetical protein; p 97.7 0.0066 2.2E-07 63.2 24.3 161 545-713 22-198 (306)
271 1w6s_A Methanol dehydrogenase 97.7 0.0016 5.3E-08 75.3 21.0 161 560-722 245-512 (599)
272 3amr_A 3-phytase; beta-propell 97.7 0.002 6.9E-08 69.0 19.7 152 566-720 39-222 (355)
273 3m0c_C LDL receptor, low-densi 97.6 0.029 1E-06 66.7 29.9 165 554-721 469-640 (791)
274 3m0c_C LDL receptor, low-densi 97.6 0.012 4.1E-07 70.0 26.2 162 554-716 422-592 (791)
275 4hw6_A Hypothetical protein, I 97.5 0.005 1.7E-07 68.0 21.3 166 554-722 180-381 (433)
276 4a2l_A BT_4663, two-component 97.5 0.019 6.5E-07 68.0 27.7 154 555-716 356-529 (795)
277 2ad6_A Methanol dehydrogenase 97.5 0.0069 2.4E-07 69.4 22.8 152 568-721 161-461 (571)
278 3amr_A 3-phytase; beta-propell 97.5 0.023 7.9E-07 60.8 24.8 144 576-721 98-272 (355)
279 2xe4_A Oligopeptidase B; hydro 97.5 0.0055 1.9E-07 72.5 22.1 159 556-715 271-460 (751)
280 4a2l_A BT_4663, two-component 97.5 0.032 1.1E-06 66.0 28.7 152 555-717 405-575 (795)
281 4hw6_A Hypothetical protein, I 97.5 0.004 1.4E-07 68.8 19.3 153 557-712 140-303 (433)
282 3tc9_A Hypothetical hydrolase; 97.4 0.017 5.8E-07 63.7 23.5 117 554-671 177-300 (430)
283 1k3i_A Galactose oxidase precu 97.4 0.0052 1.8E-07 71.4 20.2 162 555-716 242-500 (656)
284 3sov_A LRP-6, low-density lipo 97.4 0.017 5.8E-07 61.0 21.8 157 557-714 36-198 (318)
285 3kya_A Putative phosphatase; s 97.3 0.0042 1.4E-07 69.8 17.2 153 558-711 141-339 (496)
286 4a0p_A LRP6, LRP-6, low-densit 97.3 0.058 2E-06 62.5 27.4 162 556-721 80-245 (628)
287 1n7d_A LDL receptor, low-densi 97.3 0.00082 2.8E-08 79.0 11.3 161 558-721 455-622 (699)
288 1w6s_A Methanol dehydrogenase 97.2 0.011 3.9E-07 68.0 19.8 149 569-721 123-350 (599)
289 2xbg_A YCF48-like protein; pho 97.2 0.082 2.8E-06 55.6 24.4 160 542-711 151-320 (327)
290 1flg_A Protein (quinoprotein e 97.1 0.0096 3.3E-07 68.4 17.7 133 565-700 331-546 (582)
291 3v9f_A Two-component system se 97.1 0.055 1.9E-06 63.8 24.7 154 555-716 406-571 (781)
292 3s94_A LRP-6, low-density lipo 97.1 0.068 2.3E-06 61.7 24.3 162 556-720 84-250 (619)
293 4a0p_A LRP6, LRP-6, low-densit 97.0 0.066 2.2E-06 62.0 24.1 158 556-714 37-198 (628)
294 3v9f_A Two-component system se 97.0 0.11 3.7E-06 61.3 25.8 155 555-717 362-528 (781)
295 2xbg_A YCF48-like protein; pho 96.9 0.12 4.1E-06 54.3 22.8 159 542-706 108-272 (327)
296 3sre_A PON1, serum paraoxonase 96.9 0.08 2.7E-06 56.9 21.0 162 549-713 43-252 (355)
297 2xzh_A Clathrin heavy chain 1; 96.8 0.31 1.1E-05 51.6 24.5 158 560-721 71-298 (365)
298 2p9w_A MAL S 1 allergenic prot 96.8 0.12 4.2E-06 54.7 21.8 153 558-713 65-265 (334)
299 3pbp_A Nucleoporin NUP82; beta 96.8 0.043 1.5E-06 60.0 18.3 110 557-668 67-208 (452)
300 1bpo_A Protein (clathrin); cla 96.8 0.17 5.7E-06 55.6 22.4 161 556-720 106-296 (494)
301 3pbp_A Nucleoporin NUP82; beta 96.7 0.064 2.2E-06 58.7 19.2 144 564-710 29-209 (452)
302 1n7d_A LDL receptor, low-densi 96.7 0.0024 8.3E-08 75.0 8.3 158 556-714 406-572 (699)
303 1k3i_A Galactose oxidase precu 96.7 0.0054 1.9E-07 71.2 11.0 155 560-717 190-382 (656)
304 2ism_A Putative oxidoreductase 96.5 0.06 2E-06 57.5 17.3 142 556-701 31-220 (352)
305 2vpj_A Kelch-like protein 12; 96.4 0.11 3.7E-06 53.3 17.9 142 566-715 112-280 (301)
306 3kya_A Putative phosphatase; s 96.4 0.074 2.5E-06 59.6 17.5 161 558-721 249-483 (496)
307 3iot_A Maltose-binding protein 96.4 0.0031 1E-07 69.8 6.1 14 52-65 336-349 (449)
308 2xn4_A Kelch-like protein 2; s 96.3 0.11 3.9E-06 53.3 17.3 144 566-715 108-278 (302)
309 3sre_A PON1, serum paraoxonase 96.3 0.31 1.1E-05 52.2 20.9 144 556-703 112-287 (355)
310 3s94_A LRP-6, low-density lipo 96.3 1.5 5.1E-05 50.4 28.2 157 556-715 392-553 (619)
311 1cru_A Protein (soluble quinop 96.3 0.4 1.4E-05 53.0 22.5 104 556-660 27-162 (454)
312 3das_A Putative oxidoreductase 96.1 0.25 8.6E-06 52.8 19.2 148 550-698 26-217 (347)
313 3a9g_A Putative uncharacterize 96.1 0.13 4.4E-06 55.0 17.0 143 556-702 29-216 (354)
314 3ii7_A Kelch-like protein 7; p 96.0 0.18 6.2E-06 51.8 16.9 142 566-715 101-274 (306)
315 2ism_A Putative oxidoreductase 95.9 0.53 1.8E-05 50.0 20.3 105 555-660 74-221 (352)
316 2g8s_A Glucose/sorbosone dehyd 95.8 0.16 5.4E-06 54.2 15.9 144 557-702 19-216 (353)
317 2vpj_A Kelch-like protein 12; 95.7 0.57 2E-05 47.7 19.1 145 566-716 62-234 (301)
318 2xzh_A Clathrin heavy chain 1; 95.6 1.5 5.3E-05 46.3 21.6 201 509-713 100-332 (365)
319 2xn4_A Kelch-like protein 2; s 95.6 0.36 1.2E-05 49.4 17.1 142 566-715 61-231 (302)
320 3ii7_A Kelch-like protein 7; p 95.5 0.35 1.2E-05 49.6 16.9 142 566-715 55-227 (306)
321 3a9g_A Putative uncharacterize 95.4 0.78 2.7E-05 48.8 19.7 155 556-713 73-296 (354)
322 1zgk_A Kelch-like ECH-associat 95.2 0.36 1.2E-05 49.8 15.6 142 566-715 121-289 (308)
323 1bpo_A Protein (clathrin); cla 95.1 2.7 9.2E-05 46.2 22.4 156 556-713 151-331 (494)
324 3s25_A Hypothetical 7-bladed b 95.0 0.35 1.2E-05 50.5 15.0 141 560-714 57-217 (302)
325 1tl2_A L10, protein (tachylect 94.9 1 3.4E-05 45.1 16.8 141 557-707 42-204 (236)
326 2uvk_A YJHT; unknown function, 94.8 0.4 1.4E-05 50.3 14.8 57 664-720 286-349 (357)
327 4asc_A Kelch repeat and BTB do 94.7 0.41 1.4E-05 49.4 14.5 143 566-716 98-280 (315)
328 3iot_A Maltose-binding protein 94.6 0.014 4.7E-07 64.5 2.9 7 57-63 337-343 (449)
329 1zgk_A Kelch-like ECH-associat 94.4 0.82 2.8E-05 47.0 15.8 144 566-715 70-242 (308)
330 4asc_A Kelch repeat and BTB do 94.2 1.7 5.9E-05 44.6 18.0 148 561-715 40-223 (315)
331 1xi4_A Clathrin heavy chain; a 94.1 0.51 1.8E-05 58.8 15.3 159 556-718 106-294 (1630)
332 3das_A Putative oxidoreductase 94.1 7.2 0.00025 41.4 24.7 151 473-658 25-218 (347)
333 3sbq_A Nitrous-oxide reductase 94.0 1.1 3.8E-05 50.5 16.5 82 641-723 323-428 (638)
334 2woz_A Kelch repeat and BTB do 93.8 1.1 3.8E-05 46.1 15.6 144 566-717 109-291 (318)
335 2woz_A Kelch repeat and BTB do 93.8 2.4 8.3E-05 43.5 18.1 146 563-715 53-233 (318)
336 2zwa_A Leucine carboxyl methyl 93.6 2.1 7E-05 49.9 18.9 149 566-717 451-639 (695)
337 2g8s_A Glucose/sorbosone dehyd 93.5 8.2 0.00028 40.6 22.0 102 556-658 66-214 (353)
338 2uvk_A YJHT; unknown function, 93.1 1.2 4.2E-05 46.5 14.7 51 566-618 65-128 (357)
339 1cru_A Protein (soluble quinop 93.1 1.9 6.6E-05 47.5 16.7 106 597-702 26-163 (454)
340 3s25_A Hypothetical 7-bladed b 93.0 1.9 6.6E-05 44.8 15.7 139 565-718 23-181 (302)
341 2be1_A Serine/threonine-protei 92.8 0.29 9.9E-06 52.1 9.1 141 568-710 11-181 (339)
342 3ott_A Two-component system se 92.8 18 0.00061 42.0 26.8 150 556-716 63-223 (758)
343 3ei3_A DNA damage-binding prot 92.7 8.1 0.00028 47.8 23.1 141 567-713 844-999 (1158)
344 1tl2_A L10, protein (tachylect 92.2 0.69 2.4E-05 46.3 10.2 132 567-707 4-157 (236)
345 3ei3_A DNA damage-binding prot 92.0 27 0.00092 43.1 26.4 136 577-715 492-640 (1158)
346 3sbq_A Nitrous-oxide reductase 91.8 1.1 3.6E-05 50.7 12.2 142 578-720 299-487 (638)
347 3ott_A Two-component system se 90.5 27 0.00093 40.4 23.7 149 557-716 104-263 (758)
348 2be1_A Serine/threonine-protei 89.4 0.61 2.1E-05 49.6 7.4 111 610-721 11-138 (339)
349 1xi4_A Clathrin heavy chain; a 88.3 3.6 0.00012 51.5 13.8 158 555-714 150-332 (1630)
350 4gq2_M Nucleoporin NUP120; bet 87.3 46 0.0016 40.0 22.9 38 684-721 237-274 (950)
351 2zwa_A Leucine carboxyl methyl 86.8 6.4 0.00022 45.8 14.6 148 565-715 396-579 (695)
352 1uuj_A Platelet-activating fac 86.6 0.29 1E-05 41.3 2.2 39 2-41 4-42 (88)
353 3qhy_B Beta-lactamase inhibito 85.2 18 0.00061 36.8 15.5 141 557-711 64-205 (282)
354 4fhn_B Nucleoporin NUP120; pro 85.1 17 0.0006 44.6 18.0 37 685-721 240-276 (1139)
355 2wg3_C Hedgehog-interacting pr 85.0 14 0.00046 40.8 15.4 105 598-702 14-158 (463)
356 3b7f_A Glycosyl hydrolase, BNR 83.2 27 0.00094 36.7 16.6 147 556-709 55-258 (394)
357 2wg3_C Hedgehog-interacting pr 83.1 45 0.0015 36.6 18.5 103 557-660 15-157 (463)
358 2xtc_A F-box-like/WD repeat-co 82.8 0.8 2.7E-05 38.8 3.1 43 11-53 7-50 (90)
359 3q6k_A 43.2 kDa salivary prote 82.4 42 0.0014 36.0 17.3 135 578-713 124-306 (381)
360 4gq2_M Nucleoporin NUP120; bet 81.5 86 0.003 37.7 21.7 38 642-680 237-274 (950)
361 1sqj_A OXG-RCBH, oligoxylogluc 77.5 54 0.0019 38.5 17.9 147 555-703 14-190 (789)
362 3qhy_B Beta-lactamase inhibito 76.2 22 0.00074 36.2 12.3 142 557-712 103-245 (282)
363 3b7f_A Glycosyl hydrolase, BNR 74.6 50 0.0017 34.6 15.2 50 568-619 23-77 (394)
364 3no0_A DNA gyrase subunit A; D 73.7 75 0.0026 32.2 15.6 154 556-712 24-195 (276)
365 3uc1_A DNA gyrase subunit A; D 70.3 1.1E+02 0.0036 31.9 17.7 153 556-711 95-277 (327)
366 1suu_A DNA gyrase subunit A; t 67.0 1.2E+02 0.0041 31.2 17.2 145 565-712 6-180 (312)
367 3zwu_A Alkaline phosphatase PH 63.3 71 0.0024 36.3 13.8 57 643-700 478-548 (592)
368 3uc1_A DNA gyrase subunit A; D 58.5 1.7E+02 0.006 30.2 17.5 152 558-712 44-227 (327)
369 2zux_A YESW protein; beta-prop 58.2 2.4E+02 0.0082 31.8 19.1 42 681-722 362-409 (591)
370 2cn3_A Xyloglucanase, beta-1,4 55.3 1.6E+02 0.0054 34.1 15.5 104 556-660 23-151 (737)
371 1suu_A DNA gyrase subunit A; t 54.5 1.9E+02 0.0066 29.5 20.6 193 506-712 8-230 (312)
372 3kci_A Probable E3 ubiquitin-p 52.1 2.3E+02 0.0078 29.6 25.5 149 557-712 160-344 (389)
373 3kci_A Probable E3 ubiquitin-p 46.6 2.7E+02 0.0094 29.0 25.0 150 557-711 106-291 (389)
374 1wp5_A Topoisomerase IV; broke 45.6 2.7E+02 0.0093 28.7 18.0 153 558-713 41-225 (323)
375 4fhn_B Nucleoporin NUP120; pro 45.1 64 0.0022 39.6 10.3 38 556-593 238-275 (1139)
376 4a9v_A PHOX; hydrolase, beta-p 43.1 65 0.0022 36.5 9.0 61 641-701 476-549 (592)
377 4hvt_A Ritya.17583.B, post-pro 43.1 2.4E+02 0.0083 32.5 14.3 113 559-672 132-278 (711)
378 1zvt_A Topoisomerase IV subuni 41.0 2.7E+02 0.0093 27.6 12.7 141 569-712 4-162 (256)
379 3l6v_A GYRA, DNA gyrase subuni 40.9 3.5E+02 0.012 28.5 15.9 146 564-711 4-178 (370)
380 3hx6_A Type 4 fimbrial biogene 40.8 4.3E+02 0.015 29.6 19.6 147 567-714 85-285 (570)
381 3f7f_A Nucleoporin NUP120; nuc 39.9 37 0.0013 39.4 6.5 37 557-595 223-259 (729)
382 3of7_A Regulator of chromosome 38.9 4E+02 0.014 28.6 17.8 107 598-711 148-283 (473)
383 1ofz_A Fucose-specific lectin; 38.7 3.4E+02 0.012 27.9 15.1 152 554-709 59-239 (312)
384 3f7f_A Nucleoporin NUP120; nuc 38.0 42 0.0014 39.0 6.6 35 685-721 224-258 (729)
385 3no0_A DNA gyrase subunit A; D 36.9 3.3E+02 0.011 27.2 19.7 155 555-712 67-245 (276)
386 3a0f_A Xyloglucanase; beta-pro 36.9 5.4E+02 0.019 29.6 17.8 149 554-704 19-203 (763)
387 4a9v_A PHOX; hydrolase, beta-p 33.4 1.4E+02 0.0047 33.8 9.6 60 557-616 477-549 (592)
388 3zwu_A Alkaline phosphatase PH 33.1 1.1E+02 0.0038 34.7 9.0 58 558-615 478-548 (592)
389 4d9s_A UVB-resistance protein 32.9 4.5E+02 0.015 27.5 25.4 147 556-711 121-303 (406)
390 2zuy_A YESX protein; beta-prop 29.8 6.5E+02 0.022 28.4 18.3 42 682-723 367-414 (620)
391 4d9s_A UVB-resistance protein 29.2 5.1E+02 0.018 27.0 25.1 147 557-712 174-356 (406)
392 1zi0_A DNA gyrase subunit A; b 28.2 4.8E+02 0.016 26.4 20.6 152 558-712 44-225 (307)
393 4hvt_A Ritya.17583.B, post-pro 27.2 7.5E+02 0.026 28.3 19.8 94 617-712 318-429 (711)
394 3ct5_A Morphogenesis protein 1 26.6 28 0.00096 32.5 2.2 30 12-41 17-51 (159)
395 2d68_A FOP, FGFR1OP; alpha hel 26.4 54 0.0018 27.1 3.6 30 11-40 20-49 (82)
396 1a12_A RCC1, regulator of chro 25.8 5.8E+02 0.02 26.5 21.9 148 555-711 163-363 (413)
397 2zux_A YESW protein; beta-prop 25.2 7.4E+02 0.025 27.9 13.5 43 638-680 361-408 (591)
398 3mez_B Mannose-specific lectin 23.3 3.4E+02 0.012 23.0 9.4 26 644-672 59-84 (113)
399 1sqj_A OXG-RCBH, oligoxylogluc 21.1 9.9E+02 0.034 27.5 21.5 102 556-659 64-188 (789)
400 3l6v_A GYRA, DNA gyrase subuni 20.7 7.4E+02 0.025 25.9 21.9 155 555-712 45-264 (370)
401 1sr4_A CDT A, cytolethal diste 20.4 1.8E+02 0.006 28.3 6.4 97 618-721 68-167 (206)
402 3mvd_K Regulator of chromosome 20.1 7.5E+02 0.026 25.7 26.9 187 506-709 136-370 (423)
No 1
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.98 E-value=2.3e-30 Score=273.48 Aligned_cols=215 Identities=20% Similarity=0.289 Sum_probs=192.8
Q ss_pred CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (725)
Q Consensus 477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~ 556 (725)
.+...+.++.|+|++. ++++|+.|+.|++|+... ...+..+..|..
T Consensus 11 ~h~~~V~~~~fsp~~~---------------~l~s~~~dg~v~lWd~~~-------------------~~~~~~~~~~~~ 56 (304)
T 2ynn_A 11 NRSDRVKGIDFHPTEP---------------WVLTTLYSGRVELWNYET-------------------QVEVRSIQVTET 56 (304)
T ss_dssp EECSCEEEEEECSSSS---------------EEEEEETTSEEEEEETTT-------------------TEEEEEEECCSS
T ss_pred CCCCceEEEEECCCCC---------------EEEEEcCCCcEEEEECCC-------------------CceeEEeeccCC
Confidence 4556789999999887 899999999999995432 245677889999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEE
Q 004885 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~ 636 (725)
.|.+++|+|++++|++|+.|++|+|||+.+++.+..+.+|...|++++|+|++.+|++|+.|++|++||++++......+
T Consensus 57 ~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~ 136 (304)
T 2ynn_A 57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136 (304)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEE
T ss_pred cEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999886567889
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeEEEEEec--CCCEEEEEEcCCeEEEEECC
Q 004885 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQP--RLGRILAAAIENYISILDVE 712 (725)
Q Consensus 637 ~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fsp--dg~~Lla~s~Dg~V~IwDl~ 712 (725)
.+|...|.+++|+|.+..+|++|+.|++|++||++++.+...+.. ...+..++|+| ++.+|++++.|++|+|||++
T Consensus 137 ~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~ 216 (304)
T 2ynn_A 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216 (304)
T ss_dssp CCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETT
T ss_pred cccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCC
Confidence 999999999999996555888999999999999998877666653 46799999987 67799999999999999999
Q ss_pred CCeEEEEEeCCCC
Q 004885 713 TQVCRLKLQVSHS 725 (725)
Q Consensus 713 tg~~v~~l~GH~s 725 (725)
+++++.++.+|.+
T Consensus 217 ~~~~~~~~~~h~~ 229 (304)
T 2ynn_A 217 TKSCVATLEGHMS 229 (304)
T ss_dssp TTEEEEEEECCSS
T ss_pred CCccceeeCCCCC
Confidence 9999999999964
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.97 E-value=1.2e-29 Score=280.10 Aligned_cols=214 Identities=21% Similarity=0.371 Sum_probs=195.6
Q ss_pred cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST 555 (725)
Q Consensus 476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~ 555 (725)
..+...++++.|+|++. ++++|+.|+.|++|+...+ .....+++|.
T Consensus 105 ~gh~~~V~~~~~~p~~~---------------~l~s~s~Dg~i~vwd~~~~-------------------~~~~~l~~h~ 150 (410)
T 1vyh_C 105 SGHRSPVTRVIFHPVFS---------------VMVSASEDATIKVWDYETG-------------------DFERTLKGHT 150 (410)
T ss_dssp ECCSSCEEEEEECSSSS---------------EEEEEESSSCEEEEETTTC-------------------CCCEEECCCS
T ss_pred cccCCcEEEEEEcCCCC---------------EEEEEeCCCeEEEEECCCC-------------------cEEEEEeccC
Confidence 34567899999999876 8999999999999954332 3456788999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEE
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~ 635 (725)
+.|++++|+|++++|++|+.|++|+|||+.+++++.++.+|...|.+++|+|++.+|++|+.|++|++||++++. ++..
T Consensus 151 ~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~-~~~~ 229 (410)
T 1vyh_C 151 DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-CVKT 229 (410)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEE
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-EEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987 7899
Q ss_pred EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecC--------------------C
Q 004885 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPR--------------------L 694 (725)
Q Consensus 636 ~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspd--------------------g 694 (725)
+.+|...|.+++|+|++. ++++|+.|+.|++||++++.++..+.. ...|.+++|+|+ +
T Consensus 230 ~~~h~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 308 (410)
T 1vyh_C 230 FTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPG 308 (410)
T ss_dssp EECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------C
T ss_pred EeCCCccEEEEEECCCCC-EEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCC
Confidence 999999999999999987 778999999999999999999988865 677999999996 5
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885 695 GRILAAAIENYISILDVETQVCRLKLQVSHS 725 (725)
Q Consensus 695 ~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s 725 (725)
.+|++++.|+.|+|||+++++++..+.+|.+
T Consensus 309 ~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~ 339 (410)
T 1vyh_C 309 PFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 339 (410)
T ss_dssp CEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred CEEEEEeCCCeEEEEECCCCceEEEEECCCC
Confidence 6899999999999999999999999999964
No 3
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.97 E-value=2.8e-29 Score=271.58 Aligned_cols=212 Identities=17% Similarity=0.190 Sum_probs=178.0
Q ss_pred CeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEE
Q 004885 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560 (725)
Q Consensus 481 ~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~ 560 (725)
.+.++.|++++ .+++|+.|+.|++|+...+. ........+.+|.+.|++
T Consensus 84 ~v~~~~~s~d~----------------~l~~~s~dg~v~lWd~~~~~---------------~~~~~~~~~~~H~~~V~~ 132 (344)
T 4gqb_B 84 GVADLTWVGER----------------GILVASDSGAVELWELDENE---------------TLIVSKFCKYEHDDIVST 132 (344)
T ss_dssp CEEEEEEETTT----------------EEEEEETTSEEEEEEECTTS---------------SCEEEEEEEECCSSCEEE
T ss_pred CEEEEEEeCCC----------------eEEEEECCCEEEEEeccCCC---------------ceeEeeccccCCCCCEEE
Confidence 46667777653 57789999999999654331 111223456699999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCeeeEEEe--
Q 004885 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFT-- 637 (725)
Q Consensus 561 i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~-~~Lasgs~DgtIrvWDl~~~~~~l~~~~-- 637 (725)
|+|+|++++|++|+.|++|+|||+++++++.++.+|...|++++|+|++ .+|++++.|++|++||++++. ++..+.
T Consensus 133 v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~ 211 (344)
T 4gqb_B 133 VSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK-PASQIGCS 211 (344)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS-CEEECC--
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccc-eeeeeecc
Confidence 9999999999999999999999999999999999999999999999986 578999999999999999887 555553
Q ss_pred cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCC-EEEEEEcCCeEEEEECCCCe
Q 004885 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLG-RILAAAIENYISILDVETQV 715 (725)
Q Consensus 638 ~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~-~Lla~s~Dg~V~IwDl~tg~ 715 (725)
.|...+.+++|+|++..+|++|+.|+.|+|||+++++++..+.. ...|++|+|+|++. +|++++.|++|+|||+++++
T Consensus 212 ~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~ 291 (344)
T 4gqb_B 212 APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE 291 (344)
T ss_dssp --CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE
T ss_pred eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc
Confidence 45567999999998887999999999999999999999999886 67899999999985 68889999999999999998
Q ss_pred EEEEEeCCCC
Q 004885 716 CRLKLQVSHS 725 (725)
Q Consensus 716 ~v~~l~GH~s 725 (725)
++ .+.||.+
T Consensus 292 ~~-~~~~H~~ 300 (344)
T 4gqb_B 292 LF-RSQAHRD 300 (344)
T ss_dssp EE-EECCCSS
T ss_pred EE-EEcCCCC
Confidence 76 5788864
No 4
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.97 E-value=9.5e-29 Score=260.26 Aligned_cols=214 Identities=22% Similarity=0.381 Sum_probs=194.4
Q ss_pred ccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885 475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 554 (725)
Q Consensus 475 ~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H 554 (725)
...+...+.++.|+|++. ++++|+.|+.|++|...++ +....+.+|
T Consensus 19 ~~gh~~~v~~~~~s~~~~---------------~l~s~~~dg~i~iw~~~~~-------------------~~~~~~~~h 64 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGE---------------WLASSSADKLIKIWGAYDG-------------------KFEKTISGH 64 (312)
T ss_dssp ECCCSSCEEEEEECTTSS---------------EEEEEETTSCEEEEETTTC-------------------CEEEEECCC
T ss_pred EcccCCcEEEEEECCCCC---------------EEEEeeCCCeEEEEeCCCc-------------------ccchhhccC
Confidence 345667889999999876 8999999999999954322 345667899
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE
Q 004885 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~ 634 (725)
...|.+++|+|++++|++|+.|+.|+|||+++++.+..+.+|...|.+++|+|++.+|++|+.|++|++||++++. ++.
T Consensus 65 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~ 143 (312)
T 4ery_A 65 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLK 143 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-EEE
T ss_pred CCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-EEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999887 788
Q ss_pred EEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVE 712 (725)
Q Consensus 635 ~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~ 712 (725)
.+..|...|.+++|+|++. +|++++.|+.|++||+++++++..+.. ...+..++|+|++.+|++++.|+.|++||++
T Consensus 144 ~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 222 (312)
T 4ery_A 144 TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222 (312)
T ss_dssp EECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred EecCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 9999999999999999988 677999999999999999998887754 4579999999999999999999999999999
Q ss_pred CCeEEEEEeCCC
Q 004885 713 TQVCRLKLQVSH 724 (725)
Q Consensus 713 tg~~v~~l~GH~ 724 (725)
+++++..+.+|.
T Consensus 223 ~~~~~~~~~~~~ 234 (312)
T 4ery_A 223 KGKCLKTYTGHK 234 (312)
T ss_dssp TTEEEEEECSSC
T ss_pred CCcEEEEEEecC
Confidence 999999999986
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.97 E-value=7.4e-29 Score=261.89 Aligned_cols=199 Identities=22% Similarity=0.362 Sum_probs=176.1
Q ss_pred cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004885 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (725)
Q Consensus 507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~ 586 (725)
+++++|+.|+.|++|+...+ +.+..+++|.+.|++++|+|++++|++|+.|++|+|||+++
T Consensus 68 ~~l~s~s~d~~i~vwd~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~ 128 (304)
T 2ynn_A 68 NWIIVGSDDFRIRVFNYNTG-------------------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128 (304)
T ss_dssp TEEEEEETTSEEEEEETTTC-------------------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGG
T ss_pred CEEEEECCCCEEEEEECCCC-------------------cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCC
Confidence 48999999999999954332 45667889999999999999999999999999999999987
Q ss_pred C-eEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCC-CeEEEEEeCCC
Q 004885 587 F-TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNS 663 (725)
Q Consensus 587 ~-~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g-~~llaSgs~Dg 663 (725)
+ .....+.+|...|++++|+| ++.+|++|+.|++|++||+++.........+|...|..++|+|.. ..+|++++.|+
T Consensus 129 ~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~ 208 (304)
T 2ynn_A 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL 208 (304)
T ss_dssp TTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTS
T ss_pred CcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCC
Confidence 6 56678899999999999999 678999999999999999988774444555677889999998742 23788999999
Q ss_pred cEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885 664 EIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH 724 (725)
Q Consensus 664 ~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~ 724 (725)
+|+|||+++++++..+.. ...|.+++|+|++.+|++++.|++|+|||+++++++.++.+|.
T Consensus 209 ~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~ 270 (304)
T 2ynn_A 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL 270 (304)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS
T ss_pred eEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC
Confidence 999999999999999986 6789999999999999999999999999999999999999875
No 6
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.97 E-value=7.7e-29 Score=263.83 Aligned_cols=220 Identities=17% Similarity=0.243 Sum_probs=192.6
Q ss_pred ccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885 475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 554 (725)
Q Consensus 475 ~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H 554 (725)
...+...+.++.|++++. .++++|+.|++|++|..... .......+..+++|
T Consensus 13 l~gH~~~V~~l~~~~~~~--------------~~l~s~s~D~~v~~W~~~~~--------------~~~~~~~~~~~~~h 64 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQP--------------NLLLSASRDKTLISWKLTGD--------------DQKFGVPVRSFKGH 64 (319)
T ss_dssp ECCCSSCEEEEEECSSCT--------------TEEEEEETTSEEEEEEEEEE--------------TTEEEEEEEEEECC
T ss_pred EccccceEEEEEccCCCc--------------cEEEEecCCccEEEecCCCC--------------CccccccceEEeCC
Confidence 345667788899988553 48999999999999954321 11223456788999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE
Q 004885 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~ 634 (725)
...|.+++|+|++++|++|+.|++|+|||+.+++.+..+.+|...|.+++|+|++.+|++|+.|++|++||++. . ++.
T Consensus 65 ~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~-~~~ 142 (319)
T 3frx_A 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-Q-CLA 142 (319)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-C-EEE
T ss_pred cccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-C-eEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999974 3 688
Q ss_pred EEecCCCCeEEEEEccCCC-----eEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEE
Q 004885 635 TFTGHSTTVMSLDFHPSKE-----DLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISI 708 (725)
Q Consensus 635 ~~~~h~~~V~sl~fsP~g~-----~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~I 708 (725)
.+.+|...|.+++|+|... .++++++.|+.|++||++++.+...+.. ...|.+++|+|++.+|++++.|+.|+|
T Consensus 143 ~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~i 222 (319)
T 3frx_A 143 TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222 (319)
T ss_dssp EECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred EEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 8999999999999999632 3788999999999999999998888865 678999999999999999999999999
Q ss_pred EECCCCeEEEEEeCCC
Q 004885 709 LDVETQVCRLKLQVSH 724 (725)
Q Consensus 709 wDl~tg~~v~~l~GH~ 724 (725)
||+++++++..+.+|.
T Consensus 223 wd~~~~~~~~~~~~~~ 238 (319)
T 3frx_A 223 WNLAAKKAMYTLSAQD 238 (319)
T ss_dssp EETTTTEEEEEEECCS
T ss_pred EECCCCcEEEEecCCC
Confidence 9999999999998764
No 7
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.97 E-value=3.2e-29 Score=276.60 Aligned_cols=201 Identities=19% Similarity=0.348 Sum_probs=183.8
Q ss_pred CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (725)
Q Consensus 505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl 584 (725)
.+.++++|+.|++|++|+.. ....+..+.+|...|.+++|+|++++|++|+.|++|++||+
T Consensus 161 ~~~~l~sgs~D~~i~iwd~~-------------------~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~ 221 (410)
T 1vyh_C 161 SGKLLASCSADMTIKLWDFQ-------------------GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 221 (410)
T ss_dssp TSSEEEEEETTSCCCEEETT-------------------SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred CCCEEEEEeCCCeEEEEeCC-------------------CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 34599999999999999542 22456778899999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCC------------
Q 004885 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK------------ 652 (725)
Q Consensus 585 ~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g------------ 652 (725)
.++.++.++.+|...|.+++|+|++.+|++|+.|++|++||+.++. +...+.+|...|.+++|+|++
T Consensus 222 ~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~ 300 (410)
T 1vyh_C 222 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE-CKAELREHRHVVECISWAPESSYSSISEATGSE 300 (410)
T ss_dssp TTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred CCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-eeeEecCCCceEEEEEEcCcccccchhhhcccc
Confidence 9999999999999999999999999999999999999999999887 788899999999999999963
Q ss_pred -------CeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885 653 -------EDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH 724 (725)
Q Consensus 653 -------~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~ 724 (725)
..+|++|+.|+.|++||++++.++..+.. ...|++++|+|++.+|++++.|++|+|||+++++++..+.+|.
T Consensus 301 ~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~ 380 (410)
T 1vyh_C 301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE 380 (410)
T ss_dssp -------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS
T ss_pred ccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCC
Confidence 23788999999999999999999998875 6679999999999999999999999999999999999999996
Q ss_pred C
Q 004885 725 S 725 (725)
Q Consensus 725 s 725 (725)
+
T Consensus 381 ~ 381 (410)
T 1vyh_C 381 H 381 (410)
T ss_dssp S
T ss_pred C
Confidence 3
No 8
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.97 E-value=5.6e-29 Score=265.79 Aligned_cols=200 Identities=23% Similarity=0.375 Sum_probs=183.7
Q ss_pred CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (725)
Q Consensus 505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl 584 (725)
...++++|+.|+.|++|+...+ +.+..+..|...|.+++|+|++++|++|+.|+.|++||+
T Consensus 91 ~~~~l~s~s~D~~i~lWd~~~~-------------------~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~ 151 (321)
T 3ow8_A 91 TLPIAASSSLDAHIRLWDLENG-------------------KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV 151 (321)
T ss_dssp SSSEEEEEETTSEEEEEETTTT-------------------EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEET
T ss_pred CCCEEEEEeCCCcEEEEECCCC-------------------CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEc
Confidence 3458999999999999954322 456677889999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc
Q 004885 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (725)
Q Consensus 585 ~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~ 664 (725)
++++....+..|...|.+++|+|++++|++|+.|+.|++||++++. ++..+.+|...|.+++|+|++. +|++++.|+.
T Consensus 152 ~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~spd~~-~l~s~s~dg~ 229 (321)
T 3ow8_A 152 ESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK-LLHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGY 229 (321)
T ss_dssp TTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCCCEEEECTTSC-EEEEECTTSC
T ss_pred CCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-EEEEEcccCCceeEEEEcCCCC-EEEEEcCCCe
Confidence 9999999999999999999999999999999999999999999887 7889999999999999999988 7789999999
Q ss_pred EEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885 665 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS 725 (725)
Q Consensus 665 I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s 725 (725)
|+|||++++.++..+.. ...|.+++|+|++.+|++++.|++|+|||+++++++.++.+|.+
T Consensus 230 i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~ 291 (321)
T 3ow8_A 230 IKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD 291 (321)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred EEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCC
Confidence 99999999999988875 66799999999999999999999999999999999999999963
No 9
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.97 E-value=1.6e-28 Score=263.47 Aligned_cols=203 Identities=17% Similarity=0.282 Sum_probs=182.1
Q ss_pred CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (725)
Q Consensus 505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl 584 (725)
...++++|+.|+.|++|...... ........+.+|.+.|.++.|++++. |++++.|++|++||+
T Consensus 108 ~~~~l~s~~~d~~v~iw~~~~~~---------------~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~ 171 (340)
T 1got_B 108 SGNYVACGGLDNICSIYNLKTRE---------------GNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDI 171 (340)
T ss_dssp TSSEEEEEETTCEEEEEETTTCS---------------BSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEET
T ss_pred CCCEEEEEeCCCeEEEEECccCC---------------CcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEEC
Confidence 34499999999999999653321 12345567789999999999998765 889999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc
Q 004885 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (725)
Q Consensus 585 ~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~ 664 (725)
.+++.+..+.+|...|++++|+|++.+|++|+.|++|++||++++. ++..+.+|...|.+++|+|++. +|++++.|++
T Consensus 172 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~-~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~d~~ 249 (340)
T 1got_B 172 ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-CRQTFTGHESDINAICFFPNGN-AFATGSDDAT 249 (340)
T ss_dssp TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred CCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe-eEEEEcCCcCCEEEEEEcCCCC-EEEEEcCCCc
Confidence 9999999999999999999999999999999999999999999987 7889999999999999999987 6779999999
Q ss_pred EEEEECCCCeeEEEEecC---CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885 665 IRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS 725 (725)
Q Consensus 665 I~IwDl~t~~~v~~~~~~---~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s 725 (725)
|++||++++..+..+.+. ..|++++|+|++.+|++++.|+.|+|||+.+++++..+.||.+
T Consensus 250 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~ 313 (340)
T 1got_B 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 313 (340)
T ss_dssp EEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred EEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCC
Confidence 999999999988888753 3699999999999999999999999999999999999999974
No 10
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.97 E-value=1.5e-28 Score=265.87 Aligned_cols=233 Identities=16% Similarity=0.214 Sum_probs=191.2
Q ss_pred cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCC-------------------------
Q 004885 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPR------------------------- 530 (725)
Q Consensus 476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~------------------------- 530 (725)
..+...+.++.|++++. ++++|+.|++|++|+........
T Consensus 61 ~gH~~~V~~~~~s~d~~---------------~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~ 125 (354)
T 2pbi_B 61 KGHGNKVLCMDWCKDKR---------------RIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGG 125 (354)
T ss_dssp ECCSSCEEEEEECTTSS---------------EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEES
T ss_pred cCCCCeEEEEEECCCCC---------------EEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEee
Confidence 34566778888888765 77777788888888644332110
Q ss_pred -CccccccccCC---CceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEc
Q 004885 531 -DRVGRSAEVGK---GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606 (725)
Q Consensus 531 -~~~~~~~~~~~---~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~Iafs 606 (725)
+....+|+... .........+.+|.+.|.+++|+|++..|++|+.|++|++||+++++.+..+.+|...|.+++|+
T Consensus 126 ~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~ 205 (354)
T 2pbi_B 126 LDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLA 205 (354)
T ss_dssp TTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred CCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEE
Confidence 00011111100 01112345667899999999999999999999999999999999999999999999999999998
Q ss_pred C--CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC--
Q 004885 607 P--SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-- 682 (725)
Q Consensus 607 P--d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~-- 682 (725)
| ++.+|++|+.|++|++||++++. ++..+.+|...|.+++|+|++. +|++++.|++|++||++++..+..+...
T Consensus 206 ~~~~g~~l~sgs~Dg~v~~wd~~~~~-~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~ 283 (354)
T 2pbi_B 206 PSETGNTFVSGGCDKKAMVWDMRSGQ-CVQAFETHESDVNSVRYYPSGD-AFASGSDDATCRLYDLRADREVAIYSKESI 283 (354)
T ss_dssp CCSSCCEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCTTC
T ss_pred eCCCCCEEEEEeCCCeEEEEECCCCc-EEEEecCCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCCCc
Confidence 8 46899999999999999999988 7899999999999999999987 7789999999999999999888777642
Q ss_pred -CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885 683 -SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS 725 (725)
Q Consensus 683 -~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s 725 (725)
..+.+++|+|++.+|++++.|+.|+|||+.+++++..+.+|.+
T Consensus 284 ~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~ 327 (354)
T 2pbi_B 284 IFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN 327 (354)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS
T ss_pred ccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCC
Confidence 4689999999999999999999999999999999999999974
No 11
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.97 E-value=2.1e-28 Score=261.37 Aligned_cols=220 Identities=19% Similarity=0.219 Sum_probs=193.5
Q ss_pred cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST 555 (725)
Q Consensus 476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~ 555 (725)
..+...+.++.|++++. ....++++|+.|+.|++|..... .......+.+|.
T Consensus 29 ~~H~~~V~~v~~~~~~~-----------~~~~~l~tgs~D~~v~vW~~~~~-----------------~~~~~~~l~gh~ 80 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKK-----------ENSETVVTGSLDDLVKVWKWRDE-----------------RLDLQWSLEGHQ 80 (321)
T ss_dssp TSSSSCEEEEEEC------------------CEEEEEETTSCEEEEEEETT-----------------EEEEEEEECCCS
T ss_pred ccCCCcEEEEEEecCCC-----------CCCCEEEEEcCCCCEEEEECCCC-----------------CeeeeeeeccCC
Confidence 45677889999998643 12348999999999999954221 233455788999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEE
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~ 635 (725)
..|.+++|++++.++++++.|++|+|||+.+++.+..+..|...+.+++|+|++++|++++.|+.|++||++++. ....
T Consensus 81 ~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~-~~~~ 159 (321)
T 3ow8_A 81 LGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK-KEYS 159 (321)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS-EEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc-eeEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988 6778
Q ss_pred EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ 714 (725)
Q Consensus 636 ~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg 714 (725)
+..|...|.+++|+|+++ +|++++.|+.|++||+++++++..+.. ...|.+++|+|++.+|++++.|+.|+|||++++
T Consensus 160 ~~~~~~~v~~~~~spdg~-~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~ 238 (321)
T 3ow8_A 160 LDTRGKFILSIAYSPDGK-YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA 238 (321)
T ss_dssp EECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC
T ss_pred ecCCCceEEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc
Confidence 888999999999999988 677999999999999999999999885 678999999999999999999999999999999
Q ss_pred eEEEEEeCCCC
Q 004885 715 VCRLKLQVSHS 725 (725)
Q Consensus 715 ~~v~~l~GH~s 725 (725)
+++..+.+|.+
T Consensus 239 ~~~~~~~~h~~ 249 (321)
T 3ow8_A 239 NLAGTLSGHAS 249 (321)
T ss_dssp CEEEEECCCSS
T ss_pred ceeEEEcCCCC
Confidence 99999999964
No 12
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.96 E-value=2.1e-28 Score=264.82 Aligned_cols=205 Identities=16% Similarity=0.140 Sum_probs=172.3
Q ss_pred CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (725)
Q Consensus 477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~ 556 (725)
.+...+.++.|+|++. +|++|+.|+.|++|+... .+.+..+.+|.+
T Consensus 125 ~H~~~V~~v~~spdg~---------------~l~sgs~d~~i~iwd~~~-------------------~~~~~~~~~h~~ 170 (344)
T 4gqb_B 125 EHDDIVSTVSVLSSGT---------------QAVSGSKDICIKVWDLAQ-------------------QVVLSSYRAHAA 170 (344)
T ss_dssp CCSSCEEEEEECTTSS---------------EEEEEETTSCEEEEETTT-------------------TEEEEEECCCSS
T ss_pred CCCCCEEEEEECCCCC---------------EEEEEeCCCeEEEEECCC-------------------CcEEEEEcCcCC
Confidence 3445566666666655 999999999999995432 256778899999
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEec--cCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCee
Q 004885 557 KVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYS 632 (725)
Q Consensus 557 ~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~~~~~i~~l~--~H~~~V~~IafsPd-~~~Lasgs~DgtIrvWDl~~~~~~ 632 (725)
.|++++|++++. +|++|+.|++|+|||+++++.+..+. .|...+++++|+|+ +.+|++|+.|++|+|||++++. +
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~-~ 249 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS-C 249 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---C
T ss_pred ceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc-E
Confidence 999999999875 78999999999999999998887764 45667999999995 6788999999999999999987 7
Q ss_pred eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCE-EEEEEcCCeEEEEEC
Q 004885 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR-ILAAAIENYISILDV 711 (725)
Q Consensus 633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~-Lla~s~Dg~V~IwDl 711 (725)
+..+.+|...|++|+|+|++..+|++|+.|++|+|||+++++++....|...|++|+|+|++.+ |++++.|++|++|++
T Consensus 250 ~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 250 VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence 8999999999999999999977899999999999999999988776666788999999999875 557888999999999
Q ss_pred CCCeE
Q 004885 712 ETQVC 716 (725)
Q Consensus 712 ~tg~~ 716 (725)
.+...
T Consensus 330 ~~~~~ 334 (344)
T 4gqb_B 330 PTEPL 334 (344)
T ss_dssp CC---
T ss_pred CCCCC
Confidence 87643
No 13
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.96 E-value=1.5e-27 Score=255.94 Aligned_cols=210 Identities=24% Similarity=0.415 Sum_probs=187.2
Q ss_pred ccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885 475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 554 (725)
Q Consensus 475 ~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H 554 (725)
...+...+.++.|++++. ++++|+.|+.|++|+... ...+..+..|
T Consensus 51 l~gH~~~v~~~~~s~d~~---------------~l~s~s~Dg~v~iWd~~~-------------------~~~~~~~~~~ 96 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSR---------------LLLSASQDGKLIIWDSYT-------------------TNKVHAIPLR 96 (340)
T ss_dssp ECCCSSCEEEEEECTTSS---------------EEEEEETTTEEEEEETTT-------------------CCEEEEEECS
T ss_pred ecCCCCceEEEEECCCCC---------------EEEEEeCCCcEEEEECCC-------------------CCcceEeecC
Confidence 345667889999999886 899999999999994322 2456677889
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004885 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~----~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~ 630 (725)
...|.+++|+|++++|++|+.|+.|++||+.+. .....+.+|...|.++.|++++ .|++++.|++|++||++++.
T Consensus 97 ~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~ 175 (340)
T 1got_B 97 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQ 175 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTE
T ss_pred CccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCc
Confidence 999999999999999999999999999999764 4567788999999999999876 48999999999999999887
Q ss_pred eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 004885 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISIL 709 (725)
Q Consensus 631 ~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~Iw 709 (725)
++..+.+|...|.+++|+|++. ++++|+.|+.|++||++++.++..+.. ...|++++|+|++.+|++++.|++|+||
T Consensus 176 -~~~~~~~h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iw 253 (340)
T 1got_B 176 -QTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253 (340)
T ss_dssp -EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred -EEEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 7889999999999999999987 778999999999999999999998875 6779999999999999999999999999
Q ss_pred ECCCCeEEEEEe
Q 004885 710 DVETQVCRLKLQ 721 (725)
Q Consensus 710 Dl~tg~~v~~l~ 721 (725)
|+++++.+..+.
T Consensus 254 d~~~~~~~~~~~ 265 (340)
T 1got_B 254 DLRADQELMTYS 265 (340)
T ss_dssp ETTTTEEEEEEC
T ss_pred ECCCCcEEEEEc
Confidence 999998887775
No 14
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=3.7e-27 Score=246.70 Aligned_cols=221 Identities=16% Similarity=0.245 Sum_probs=185.1
Q ss_pred cccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecC
Q 004885 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (725)
Q Consensus 474 l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 553 (725)
+...+...+.++.|++++. ++++|+.|+.|++|..... .........+.+
T Consensus 6 ~~~gH~~~v~~~~~~~~~~---------------~l~~~~~dg~i~iw~~~~~---------------~~~~~~~~~~~~ 55 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGR---------------HVATCSSDQHIKVFKLDKD---------------TSNWELSDSWRA 55 (351)
T ss_dssp EECCCSSCEEEEEECSSSS---------------EEEEEETTSEEEEEEECSS---------------SCCEEEEEEEEC
T ss_pred cCcccccceeEEEEcCCCC---------------EEEEeeCCCeEEEEECCCC---------------CCcceecceecc
Confidence 3445677899999999886 8999999999999965432 122356677889
Q ss_pred CCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCC---------eEEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCe
Q 004885 554 STSKVESCHFSP--DGKLLATGGHDKKAVLWCTESF---------TVKSTLEEHTQWITDVRFSPS--LSRLATSSADRT 620 (725)
Q Consensus 554 H~~~V~~i~fSp--dg~~LaSgs~Dg~V~IWdl~~~---------~~i~~l~~H~~~V~~IafsPd--~~~Lasgs~Dgt 620 (725)
|...|++++|+| ++++|++|+.|++|+|||++++ +.+..+.+|...|.+++|+|+ +.+|++++.|+.
T Consensus 56 ~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 135 (351)
T 3f3f_A 56 HDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGI 135 (351)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCE
T ss_pred CCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCc
Confidence 999999999999 6999999999999999999876 668888999999999999999 999999999999
Q ss_pred EEEEECCCCCe-----------------------------------------------------------eeEEEecCCC
Q 004885 621 VRVWDTENPDY-----------------------------------------------------------SLRTFTGHST 641 (725)
Q Consensus 621 IrvWDl~~~~~-----------------------------------------------------------~l~~~~~h~~ 641 (725)
|++||++++.. .+..+.+|..
T Consensus 136 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 215 (351)
T 3f3f_A 136 LRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKS 215 (351)
T ss_dssp EEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCS
T ss_pred EEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCc
Confidence 99999875431 1445567899
Q ss_pred CeEEEEEccCCC---eEEEEEeCCCcEEEEECCCC---------------------------------------------
Q 004885 642 TVMSLDFHPSKE---DLLCSCDNNSEIRYWSINNG--------------------------------------------- 673 (725)
Q Consensus 642 ~V~sl~fsP~g~---~llaSgs~Dg~I~IwDl~t~--------------------------------------------- 673 (725)
.|++++|+|++. .+|++++.||.|++||++++
T Consensus 216 ~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (351)
T 3f3f_A 216 LIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ 295 (351)
T ss_dssp CEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEE
T ss_pred ceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeeccccc
Confidence 999999999983 58889999999999999865
Q ss_pred -eeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC---eEEEEEeCCC
Q 004885 674 -SCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ---VCRLKLQVSH 724 (725)
Q Consensus 674 -~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg---~~v~~l~GH~ 724 (725)
.++..+.. ...|++++|+|++.+|++++.|+.|+|||+.++ +++..+..|+
T Consensus 296 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~ 351 (351)
T 3f3f_A 296 VELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVITAQQ 351 (351)
T ss_dssp EEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEEEEC---
T ss_pred ccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhheeehcccC
Confidence 45555554 577999999999999999999999999999987 6777777663
No 15
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.96 E-value=2.4e-27 Score=255.05 Aligned_cols=200 Identities=22% Similarity=0.352 Sum_probs=171.7
Q ss_pred CeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEE
Q 004885 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560 (725)
Q Consensus 481 ~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~ 560 (725)
.+..+.|+|++. +|++|+.|+.|++|....+ ..........+|...|.+
T Consensus 18 ~v~~l~~sp~g~---------------~las~~~D~~i~iw~~~~~----------------~~~~~~~~~~~h~~~v~~ 66 (345)
T 3fm0_A 18 RCWFLAWNPAGT---------------LLASCGGDRRIRIWGTEGD----------------SWICKSVLSEGHQRTVRK 66 (345)
T ss_dssp CEEEEEECTTSS---------------CEEEEETTSCEEEEEEETT----------------EEEEEEEECSSCSSCEEE
T ss_pred cEEEEEECCCCC---------------EEEEEcCCCeEEEEEcCCC----------------cceeeeeeccccCCcEEE
Confidence 678899999887 8999999999999943221 111122334689999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCC--eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--eeeEEE
Q 004885 561 CHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTF 636 (725)
Q Consensus 561 i~fSpdg~~LaSgs~Dg~V~IWdl~~~--~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~--~~l~~~ 636 (725)
++|+|++++|++|+.|++|+|||+... +++..+.+|...|++++|+|++++|++|+.|++|++||+++.. .++..+
T Consensus 67 ~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 146 (345)
T 3fm0_A 67 VAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL 146 (345)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEE
T ss_pred EEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEe
Confidence 999999999999999999999998775 4678899999999999999999999999999999999998764 346778
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee--EEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--AGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVE 712 (725)
Q Consensus 637 ~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~--v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~ 712 (725)
.+|...|.+++|+|++. +|++++.|+.|++||++++.. +..+.. ...|++++|+|++.+|++++.|++|+|||+.
T Consensus 147 ~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 147 NSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY 224 (345)
T ss_dssp CCCCSCEEEEEECSSSS-CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred cCcCCCeEEEEECCCCC-EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence 89999999999999988 677999999999999988754 455554 6789999999999999999999999999963
No 16
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.96 E-value=5.3e-27 Score=256.93 Aligned_cols=208 Identities=22% Similarity=0.322 Sum_probs=180.3
Q ss_pred CeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEE
Q 004885 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560 (725)
Q Consensus 481 ~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~ 560 (725)
.+.++.|++++. ++++|+.|+.|++|+... .+.+..+.+|...|++
T Consensus 125 ~v~~v~~s~dg~---------------~l~s~~~d~~i~iwd~~~-------------------~~~~~~~~~h~~~v~~ 170 (393)
T 1erj_A 125 YIRSVCFSPDGK---------------FLATGAEDRLIRIWDIEN-------------------RKIVMILQGHEQDIYS 170 (393)
T ss_dssp BEEEEEECTTSS---------------EEEEEETTSCEEEEETTT-------------------TEEEEEECCCSSCEEE
T ss_pred eEEEEEECCCCC---------------EEEEEcCCCeEEEEECCC-------------------CcEEEEEccCCCCEEE
Confidence 467888998876 899999999999995422 2456778899999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeEEE---
Q 004885 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTF--- 636 (725)
Q Consensus 561 i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~~l~~~--- 636 (725)
++|+|++++|++|+.|++|++||++++++...+. +...|.+++|+| ++.+|++|+.|++|++||++++. .+..+
T Consensus 171 ~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~-~~~~~~~~ 248 (393)
T 1erj_A 171 LDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF-LVERLDSE 248 (393)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC-EEEEEC--
T ss_pred EEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc-EEEeeccc
Confidence 9999999999999999999999999999887776 567899999999 89999999999999999999877 55555
Q ss_pred ----ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCC------------eeEEEEec-CCCeEEEEEecCCCEEEE
Q 004885 637 ----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG------------SCAGVFKC-QSGATQMRFQPRLGRILA 699 (725)
Q Consensus 637 ----~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~------------~~v~~~~~-~~~V~sv~fspdg~~Lla 699 (725)
.+|...|.+++|+|++. +|++++.|+.|++||+++. .+...+.. ...|.+++|+|++.+|++
T Consensus 249 ~~~~~~h~~~v~~v~~~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 327 (393)
T 1erj_A 249 NESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS 327 (393)
T ss_dssp ----CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEE
T ss_pred ccCCCCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEE
Confidence 57899999999999988 6779999999999999753 34445544 567999999999999999
Q ss_pred EEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885 700 AAIENYISILDVETQVCRLKLQVSHS 725 (725)
Q Consensus 700 ~s~Dg~V~IwDl~tg~~v~~l~GH~s 725 (725)
++.|+.|++||+++++++..+.||.+
T Consensus 328 gs~D~~v~iwd~~~~~~~~~l~~h~~ 353 (393)
T 1erj_A 328 GSKDRGVLFWDKKSGNPLLMLQGHRN 353 (393)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSS
T ss_pred EeCCCeEEEEECCCCeEEEEECCCCC
Confidence 99999999999999999999999964
No 17
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.96 E-value=1.5e-27 Score=258.44 Aligned_cols=174 Identities=18% Similarity=0.279 Sum_probs=155.3
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCC
Q 004885 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTEN 628 (725)
Q Consensus 550 ~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~-~Lasgs~DgtIrvWDl~~ 628 (725)
...+|.+.|++++|+|++++|++|+.|++|+|||+++++++..+.+|...|++++|+|++. +|++++.|++|++||+++
T Consensus 134 ~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~ 213 (357)
T 4g56_B 134 AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK 213 (357)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS
T ss_pred ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCC
Confidence 3458999999999999999999999999999999999999999999999999999999864 789999999999999998
Q ss_pred CCeeeEE--EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCC-EEEEEEcCC
Q 004885 629 PDYSLRT--FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLG-RILAAAIEN 704 (725)
Q Consensus 629 ~~~~l~~--~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~-~Lla~s~Dg 704 (725)
+. ++.. +..|...|.+|+|+|++..+|++++.|+.|++||+++++++..+.. ...|++++|+|++. +|++++.|+
T Consensus 214 ~~-~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~ 292 (357)
T 4g56_B 214 PK-PATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDC 292 (357)
T ss_dssp SS-CBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTS
T ss_pred Cc-eeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCC
Confidence 77 3433 3456778999999999888999999999999999999999988875 67899999999975 677889999
Q ss_pred eEEEEECCCCeEEEEEeCCCC
Q 004885 705 YISILDVETQVCRLKLQVSHS 725 (725)
Q Consensus 705 ~V~IwDl~tg~~v~~l~GH~s 725 (725)
+|+|||+++++++..+ +|.+
T Consensus 293 ~i~iwd~~~~~~~~~~-~H~~ 312 (357)
T 4g56_B 293 TVAVLDADFSEVFRDL-SHRD 312 (357)
T ss_dssp CEEEECTTSCEEEEEC-CCSS
T ss_pred EEEEEECCCCcEeEEC-CCCC
Confidence 9999999999988765 6753
No 18
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.96 E-value=2.6e-27 Score=258.21 Aligned_cols=234 Identities=18% Similarity=0.263 Sum_probs=192.7
Q ss_pred cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCC--------------------------
Q 004885 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADP-------------------------- 529 (725)
Q Consensus 476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~-------------------------- 529 (725)
..+...+.++.|+|++. ++++|+.|++|++|+.......
T Consensus 63 ~gH~~~V~~~~~sp~~~---------------~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~ 127 (380)
T 3iz6_a 63 QGHSGKVYSLDWTPEKN---------------WIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGG 127 (380)
T ss_dssp CCCSSCEEEEEECTTSS---------------CEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECC
T ss_pred cccccEEEEEEEcCCCC---------------EEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEee
Confidence 45667899999999886 8999999999999976543211
Q ss_pred CCccccccccCCC----ceeeeEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEe-----ccCCCC
Q 004885 530 RDRVGRSAEVGKG----FTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTL-----EEHTQW 599 (725)
Q Consensus 530 ~~~~~~~~~~~~~----~~~~~~~~l~~H~~~V~~i~fSpd-g~~LaSgs~Dg~V~IWdl~~~~~i~~l-----~~H~~~ 599 (725)
.+...++|+.... ........+.+|.+.|.++.|+|+ +.+|++|+.|++|++||+.+++.+..+ .+|...
T Consensus 128 ~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~ 207 (380)
T 3iz6_a 128 LDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTAD 207 (380)
T ss_dssp SSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSC
T ss_pred CCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccC
Confidence 1111222222111 111233457799999999999996 457999999999999999999988887 679999
Q ss_pred eEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEE
Q 004885 600 ITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV 678 (725)
Q Consensus 600 V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~ 678 (725)
|.+++|++ ++.+|++|+.|++|++||++....++..+.+|...|.+|+|+|++. +|++++.|++|+|||++++.++..
T Consensus 208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~lwd~~~~~~~~~ 286 (380)
T 3iz6_a 208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRTGHQLQV 286 (380)
T ss_dssp EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS-EEEEECSSSCEEEEETTTTEEEEE
T ss_pred eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC-eEEEEcCCCeEEEEECCCCcEEEE
Confidence 99999987 7899999999999999999865557899999999999999999988 678999999999999999999888
Q ss_pred EecC--------CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE----eCCCC
Q 004885 679 FKCQ--------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL----QVSHS 725 (725)
Q Consensus 679 ~~~~--------~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l----~GH~s 725 (725)
+... ..|++++|+|+|.+|++++.|+.|+|||+.+++++..+ .+|.+
T Consensus 287 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~ 345 (380)
T 3iz6_a 287 YNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEG 345 (380)
T ss_dssp ECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCC
T ss_pred ecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCC
Confidence 7642 23899999999999999999999999999999999888 57753
No 19
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.96 E-value=6.2e-27 Score=246.32 Aligned_cols=207 Identities=14% Similarity=0.208 Sum_probs=174.9
Q ss_pred cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST 555 (725)
Q Consensus 476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~ 555 (725)
..+...+.++.|++++. +|++|+.|++|++|..... ..+.+..+.+|.
T Consensus 6 ~~h~~~V~~~~~s~~g~---------------~las~s~D~~v~iw~~~~~-----------------~~~~~~~l~gH~ 53 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGK---------------RMATCSSDKTIKIFEVEGE-----------------THKLIDTLTGHE 53 (297)
T ss_dssp CSCSSCEEEEEECTTSS---------------EEEEEETTSCEEEEEBCSS-----------------CBCCCEEECCCS
T ss_pred cCCcCceEEEEECCCCC---------------EEEEEeCCCEEEEEecCCC-----------------CcEEEEEEcccc
Confidence 44566788999999887 8999999999999954321 123456788999
Q ss_pred CCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCe--EEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCC
Q 004885 556 SKVESCHFSP--DGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENP 629 (725)
Q Consensus 556 ~~V~~i~fSp--dg~~LaSgs~Dg~V~IWdl~~~~--~i~~l~~H~~~V~~IafsPd--~~~Lasgs~DgtIrvWDl~~~ 629 (725)
+.|++++|++ ++++|++|+.|++|+|||+++++ .+..+.+|...|.+++|+|+ +.+|++++.|++|++||+++.
T Consensus 54 ~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~ 133 (297)
T 2pm7_B 54 GPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN 133 (297)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSS
T ss_pred CCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCC
Confidence 9999999986 48999999999999999998763 56678889999999999997 889999999999999999876
Q ss_pred C-eeeEEEecCCCCeEEEEEccCC------------CeEEEEEeCCCcEEEEECCCCe----eEEEEec-CCCeEEEEEe
Q 004885 630 D-YSLRTFTGHSTTVMSLDFHPSK------------EDLLCSCDNNSEIRYWSINNGS----CAGVFKC-QSGATQMRFQ 691 (725)
Q Consensus 630 ~-~~l~~~~~h~~~V~sl~fsP~g------------~~llaSgs~Dg~I~IwDl~t~~----~v~~~~~-~~~V~sv~fs 691 (725)
. .....+.+|...|.+++|+|++ ..+|++|+.|+.|+|||++++. ++..+.. ...|.+|+|+
T Consensus 134 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~s 213 (297)
T 2pm7_B 134 GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 213 (297)
T ss_dssp SCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC
T ss_pred CceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEEC
Confidence 4 2246778999999999999973 2478899999999999998765 5556654 6779999999
Q ss_pred cCC---CEEEEEEcCCeEEEEECCCC
Q 004885 692 PRL---GRILAAAIENYISILDVETQ 714 (725)
Q Consensus 692 pdg---~~Lla~s~Dg~V~IwDl~tg 714 (725)
|++ .+|++++.|++|+|||+++.
T Consensus 214 p~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 214 PTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp CCCSSSEEEEEEETTSCEEEEEESST
T ss_pred CCCCCceEEEEEECCCcEEEEEeCCC
Confidence 985 78999999999999999874
No 20
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.9e-27 Score=251.06 Aligned_cols=219 Identities=25% Similarity=0.405 Sum_probs=174.5
Q ss_pred CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (725)
Q Consensus 478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (725)
+...+.++.|+|++. ++++|+.|+.|++|....... .......+..+.+|...
T Consensus 57 h~~~v~~v~~sp~~~---------------~las~s~D~~v~iw~~~~~~~------------~~~~~~~~~~~~~h~~~ 109 (330)
T 2hes_X 57 HKKAIRSVAWRPHTS---------------LLAAGSFDSTVSIWAKEESAD------------RTFEMDLLAIIEGHENE 109 (330)
T ss_dssp CCSCEEEEEECTTSS---------------EEEEEETTSCEEEEEC-------------------CCCEEEEEEC----C
T ss_pred ccCCEEEEEECCCCC---------------EEEEEeCCCcEEEEEcccCcC------------ccccceeEEEEcCCCCc
Confidence 555678888888765 899999999999996532210 11233566788999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCC----CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-ee
Q 004885 558 VESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YS 632 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~----~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~-~~ 632 (725)
|++++|+|++++|++|+.|++|+|||++. .+++..+.+|...|++++|+|++.+|++++.|++|++||+.+.. .+
T Consensus 110 V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~ 189 (330)
T 2hes_X 110 VKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWEC 189 (330)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeE
Confidence 99999999999999999999999999943 35778899999999999999999999999999999999998753 36
Q ss_pred eEEEecCCCCeEEEEEccCC-CeEEEEEeCCCcEEEEECCCC--------eeEEEEe--cCCCeEEEEEecCCCEEEEEE
Q 004885 633 LRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNG--------SCAGVFK--CQSGATQMRFQPRLGRILAAA 701 (725)
Q Consensus 633 l~~~~~h~~~V~sl~fsP~g-~~llaSgs~Dg~I~IwDl~t~--------~~v~~~~--~~~~V~sv~fspdg~~Lla~s 701 (725)
+..+.+|...|.+++|+|++ ..+|++++.|++|+|||++.+ .++..+. +...|.+++|+++ .+|++++
T Consensus 190 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~l~s~~ 268 (330)
T 2hes_X 190 VAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN-GLIASVG 268 (330)
T ss_dssp EEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTT-SCEEEEE
T ss_pred EEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCC-CEEEEEe
Confidence 78899999999999999983 237889999999999999754 3444443 4577999999976 5899999
Q ss_pred cCCeEEEEECCCCe--EEEE-EeCCC
Q 004885 702 IENYISILDVETQV--CRLK-LQVSH 724 (725)
Q Consensus 702 ~Dg~V~IwDl~tg~--~v~~-l~GH~ 724 (725)
.|+.|+|||+.+++ ++.. +.+|.
T Consensus 269 ~dg~v~iw~~~~~~~~~~~~~~~~h~ 294 (330)
T 2hes_X 269 ADGVLAVYEEVDGEWKVFAKRALCHG 294 (330)
T ss_dssp TTSCEEEEEEETTEEEEEEEESCTTT
T ss_pred CCCEEEEEEcCCCceEEEeccccccc
Confidence 99999999998873 3433 35664
No 21
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.96 E-value=1.7e-27 Score=258.03 Aligned_cols=204 Identities=16% Similarity=0.193 Sum_probs=177.9
Q ss_pred CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (725)
Q Consensus 477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~ 556 (725)
.+...+.++.|+|++. ++++|+.|+.|++|+.. +...+..+++|..
T Consensus 137 ~h~~~V~~v~~spdg~---------------~l~sgs~dg~v~iwd~~-------------------~~~~~~~~~~h~~ 182 (357)
T 4g56_B 137 EHDDIVKTLSVFSDGT---------------QAVSGGKDFSVKVWDLS-------------------QKAVLKSYNAHSS 182 (357)
T ss_dssp CCSSCEEEEEECSSSS---------------EEEEEETTSCEEEEETT-------------------TTEEEEEECCCSS
T ss_pred CCCCCEEEEEECCCCC---------------EEEEEeCCCeEEEEECC-------------------CCcEEEEEcCCCC
Confidence 3456678888888776 89999999999999432 2356778889999
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEe--ccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCee
Q 004885 557 KVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYS 632 (725)
Q Consensus 557 ~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~~~~~i~~l--~~H~~~V~~IafsPd-~~~Lasgs~DgtIrvWDl~~~~~~ 632 (725)
.|++++|++++. +|++++.|++|+|||+++++.+..+ ..|...|++++|+|+ +.+|++|+.|+.|++||++++. +
T Consensus 183 ~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~-~ 261 (357)
T 4g56_B 183 EVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD-S 261 (357)
T ss_dssp CEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG-G
T ss_pred CEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCc-E
Confidence 999999999875 7899999999999999988766544 456788999999997 5689999999999999999987 7
Q ss_pred eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEec-CCCEEEEEEcCCeEEEEEC
Q 004885 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP-RLGRILAAAIENYISILDV 711 (725)
Q Consensus 633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fsp-dg~~Lla~s~Dg~V~IwDl 711 (725)
+..+.+|...|++|+|+|++..+|++|+.|++|+|||+++++++..+.+...|++|+|+| ++.+|++++.|++|++||+
T Consensus 262 ~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 262 AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHL 341 (357)
T ss_dssp CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEEC
Confidence 889999999999999999987789999999999999999999998888888999999998 7889999999999999999
Q ss_pred CCCe
Q 004885 712 ETQV 715 (725)
Q Consensus 712 ~tg~ 715 (725)
.+..
T Consensus 342 ~~~~ 345 (357)
T 4g56_B 342 PSEG 345 (357)
T ss_dssp C---
T ss_pred CCCC
Confidence 7653
No 22
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.96 E-value=5.5e-27 Score=272.16 Aligned_cols=226 Identities=18% Similarity=0.298 Sum_probs=186.8
Q ss_pred CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCC--------c----------------
Q 004885 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRD--------R---------------- 532 (725)
Q Consensus 477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~--------~---------------- 532 (725)
.+...++++.|+|++. ++++|+.|++|++|+......... .
T Consensus 57 ~h~~~v~~~~~spdg~---------------~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~ 121 (611)
T 1nr0_A 57 EHSHQTTVAKTSPSGY---------------YCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAV 121 (611)
T ss_dssp CCSSCEEEEEECTTSS---------------EEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEE
T ss_pred CCCCceEEEEECCCCc---------------EEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEE
Confidence 4556688888888776 999999999999997643211100 0
Q ss_pred --------cccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEE
Q 004885 533 --------VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603 (725)
Q Consensus 533 --------~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~I 603 (725)
...+|+. ......+.+|...|++++|+|++. +|++|+.|++|++||..+++++.++.+|...|+++
T Consensus 122 ~~~~~~~~~v~~wd~-----~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v 196 (611)
T 1nr0_A 122 GEGRERFGHVFLFDT-----GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSV 196 (611)
T ss_dssp ECCSSCSEEEEETTT-----CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEE
T ss_pred ECCCCceeEEEEeeC-----CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEE
Confidence 0011111 122345789999999999999987 69999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEe-------cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeE
Q 004885 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676 (725)
Q Consensus 604 afsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~-------~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v 676 (725)
+|+|++++|++++.|++|++||+.++. ++..+. +|.+.|.+++|+|++. +|++++.|++|+|||+++++++
T Consensus 197 ~fspdg~~las~s~D~~i~lwd~~~g~-~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~ 274 (611)
T 1nr0_A 197 RYNPDGSLFASTGGDGTIVLYNGVDGT-KTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVE 274 (611)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCC-EEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEE
T ss_pred EECCCCCEEEEEECCCcEEEEECCCCc-EeeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCcee
Confidence 999999999999999999999999887 666663 7999999999999988 6779999999999999988776
Q ss_pred EEEe--------------------------------------------cCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885 677 GVFK--------------------------------------------CQSGATQMRFQPRLGRILAAAIENYISILDVE 712 (725)
Q Consensus 677 ~~~~--------------------------------------------~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~ 712 (725)
..+. +...|++++|+|++.+|++++.|++|++||+.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~ 354 (611)
T 1nr0_A 275 KTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS 354 (611)
T ss_dssp EEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Confidence 5442 24569999999999999999999999999999
Q ss_pred CCeEEEEE-eCCC
Q 004885 713 TQVCRLKL-QVSH 724 (725)
Q Consensus 713 tg~~v~~l-~GH~ 724 (725)
++++...+ .+|.
T Consensus 355 ~~~~~~~~~~~h~ 367 (611)
T 1nr0_A 355 TGISNRVFPDVHA 367 (611)
T ss_dssp TCCEEECSSCSCS
T ss_pred CCceeeecccCCc
Confidence 99887766 4553
No 23
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.4e-26 Score=247.45 Aligned_cols=213 Identities=22% Similarity=0.375 Sum_probs=171.0
Q ss_pred CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEe-cC-C
Q 004885 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PA-S 554 (725)
Q Consensus 477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~-H 554 (725)
.+...+.++.|++ .++++|+.|+.|++|....+ ....+..+ .+ |
T Consensus 12 ~h~~~v~~~~~s~-----------------~~las~~~D~~i~lw~~~~~-----------------~~~~~~~~~~~~h 57 (330)
T 2hes_X 12 LYKEKIWSFDFSQ-----------------GILATGSTDRKIKLVSVKYD-----------------DFTLIDVLDETAH 57 (330)
T ss_dssp CCSSCEEEEEEET-----------------TEEEEEESSSCEEEEECSSS-----------------CCEEEEEECTTCC
T ss_pred cCCCceeeeccCC-----------------CEEEEEcCCCEEEEEEecCC-----------------CeEEEEEEecCCc
Confidence 3445666677665 17899999999999954322 11233344 34 9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004885 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~-------~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~ 627 (725)
...|++++|+|++++|++|+.|++|+|||++. .+.+..+.+|...|++++|+|++++|++|+.|++|++||++
T Consensus 58 ~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~ 137 (330)
T 2hes_X 58 KKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETD 137 (330)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECC
T ss_pred cCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEecc
Confidence 99999999999999999999999999999843 45677889999999999999999999999999999999995
Q ss_pred CCC---eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCC--eeEEEEec-CCCeEEEEEecC--CCEEEE
Q 004885 628 NPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFKC-QSGATQMRFQPR--LGRILA 699 (725)
Q Consensus 628 ~~~---~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~--~~v~~~~~-~~~V~sv~fspd--g~~Lla 699 (725)
... .++..+.+|...|.+++|+|++. +|++++.|++|++||+.++ .++..+.. ...|.+++|+|+ +.+|++
T Consensus 138 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 216 (330)
T 2hes_X 138 ESGEEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCS 216 (330)
T ss_dssp TTCCCCEEEEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEE
T ss_pred CCCCCeEEEEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEE
Confidence 432 35678889999999999999987 7789999999999999876 57777764 678999999998 668999
Q ss_pred EEcCCeEEEEECCCC--------eEEEEEeC-CC
Q 004885 700 AAIENYISILDVETQ--------VCRLKLQV-SH 724 (725)
Q Consensus 700 ~s~Dg~V~IwDl~tg--------~~v~~l~G-H~ 724 (725)
++.|++|+|||++++ .++..+.+ |.
T Consensus 217 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~ 250 (330)
T 2hes_X 217 GSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK 250 (330)
T ss_dssp EETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS
T ss_pred EeCCCeEEEEEecCCCccccceeEEeeecccccc
Confidence 999999999999765 56666665 53
No 24
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.95 E-value=2.7e-26 Score=241.46 Aligned_cols=212 Identities=20% Similarity=0.353 Sum_probs=180.0
Q ss_pred CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (725)
Q Consensus 478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (725)
+...+..+.|++++. ++++|+.|+.|++|+.... +.+..+.+|...
T Consensus 64 h~~~v~~~~~~~~~~---------------~l~s~~~d~~i~vwd~~~~-------------------~~~~~~~~~~~~ 109 (312)
T 4ery_A 64 HKLGISDVAWSSDSN---------------LLVSASDDKTLKIWDVSSG-------------------KCLKTLKGHSNY 109 (312)
T ss_dssp CSSCEEEEEECTTSS---------------EEEEEETTSEEEEEETTTC-------------------CEEEEEECCSSC
T ss_pred CCCceEEEEEcCCCC---------------EEEEECCCCEEEEEECCCC-------------------cEEEEEcCCCCC
Confidence 344556666666554 8999999999999954322 356678899999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEE-
Q 004885 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF- 636 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~- 636 (725)
|.+++|+|++++|++|+.|++|++||+++++.+..+..|...|.+++|+|++.+|++++.|+.|++||++++. ++..+
T Consensus 110 v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~ 188 (312)
T 4ery_A 110 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-CLKTLI 188 (312)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEEEC
T ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeeEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887 45444
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC-C--eEEEEE-ecCCCEEEEEEcCCeEEEEECC
Q 004885 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-G--ATQMRF-QPRLGRILAAAIENYISILDVE 712 (725)
Q Consensus 637 ~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~-~--V~sv~f-spdg~~Lla~s~Dg~V~IwDl~ 712 (725)
..+...+.+++|+|++. ++++++.|+.|++||+++++++..+..+. . .....| .+++.+|++++.|+.|+|||++
T Consensus 189 ~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~ 267 (312)
T 4ery_A 189 DDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 267 (312)
T ss_dssp CSSCCCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETT
T ss_pred ccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECC
Confidence 45677899999999988 66688899999999999999998887532 2 222334 4667789999999999999999
Q ss_pred CCeEEEEEeCCCC
Q 004885 713 TQVCRLKLQVSHS 725 (725)
Q Consensus 713 tg~~v~~l~GH~s 725 (725)
+++++..+.+|.+
T Consensus 268 ~~~~~~~~~~h~~ 280 (312)
T 4ery_A 268 TKEIVQKLQGHTD 280 (312)
T ss_dssp TCCEEEEECCCSS
T ss_pred CchhhhhhhccCC
Confidence 9999999999963
No 25
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.95 E-value=2.4e-26 Score=244.53 Aligned_cols=195 Identities=19% Similarity=0.365 Sum_probs=172.4
Q ss_pred CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004885 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (725)
Q Consensus 506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~ 585 (725)
.+++++|+.|++|++|+...+ +.+..+.+|...|.+++|+|++.+|++|+.|++|+|||++
T Consensus 77 g~~l~s~s~D~~v~~wd~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~ 137 (319)
T 3frx_A 77 GAYALSASWDKTLRLWDVATG-------------------ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137 (319)
T ss_dssp SSEEEEEETTSEEEEEETTTT-------------------EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred CCEEEEEeCCCEEEEEECCCC-------------------CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 349999999999999954322 4567788999999999999999999999999999999996
Q ss_pred CCeEEEEeccCCCCeEEEEEcCC------CCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEE
Q 004885 586 SFTVKSTLEEHTQWITDVRFSPS------LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (725)
Q Consensus 586 ~~~~i~~l~~H~~~V~~IafsPd------~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSg 659 (725)
+.++..+.+|...|.+++|+|. +.+|++++.|++|++||+++.. ....+.+|...|.+++|+|++. +|+++
T Consensus 138 -~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~sp~g~-~l~s~ 214 (319)
T 3frx_A 138 -GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ-IEADFIGHNSNINTLTASPDGT-LIASA 214 (319)
T ss_dssp -SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE-EEEEECCCCSCEEEEEECTTSS-EEEEE
T ss_pred -CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch-hheeecCCCCcEEEEEEcCCCC-EEEEE
Confidence 4677788999999999999995 4489999999999999999877 6788999999999999999988 77799
Q ss_pred eCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885 660 DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVS 723 (725)
Q Consensus 660 s~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH 723 (725)
+.|+.|+|||+++++++..+.....|.+++|+|++.+|++++ ++.|+||++..+..+..+..+
T Consensus 215 ~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~-~~~i~v~~~~~~~~~~~~~~~ 277 (319)
T 3frx_A 215 GKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAAT-ATGIKVFSLDPQYLVDDLRPE 277 (319)
T ss_dssp ETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEE-TTEEEEEEETTEEEEEEECCC
T ss_pred eCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEc-CCCcEEEEeCcCeeeeccCcc
Confidence 999999999999999999999888999999999988776655 566999999998888877543
No 26
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.95 E-value=1.8e-27 Score=263.91 Aligned_cols=214 Identities=13% Similarity=0.162 Sum_probs=179.5
Q ss_pred CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (725)
Q Consensus 478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (725)
+...++++.|+|... .+|++|+.|+.|++|+..... ...+..+.+|.+.
T Consensus 118 ~~~~V~~l~~~P~~~--------------~~lasGs~dg~i~lWd~~~~~-----------------~~~~~~~~gH~~~ 166 (435)
T 4e54_B 118 FDRRATSLAWHPTHP--------------STVAVGSKGGDIMLWNFGIKD-----------------KPTFIKGIGAGGS 166 (435)
T ss_dssp CSSCEEEEEECSSCT--------------TCEEEEETTSCEEEECSSCCS-----------------CCEEECCCSSSCC
T ss_pred CCCCEEEEEEeCCCC--------------CEEEEEeCCCEEEEEECCCCC-----------------ceeEEEccCCCCC
Confidence 455689999998543 389999999999999543321 1233456789999
Q ss_pred eEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEecc--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE
Q 004885 558 VESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (725)
Q Consensus 558 V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~--H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~ 634 (725)
|++|+|+| ++++|++|+.|++|+|||+++......... +...+.+++|+|++.+|++|+.|++|++||++.. .+.
T Consensus 167 V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--~~~ 244 (435)
T 4e54_B 167 ITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--ELW 244 (435)
T ss_dssp CCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--BCC
T ss_pred EEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--eeE
Confidence 99999998 789999999999999999987655443333 3456789999999999999999999999999754 477
Q ss_pred EEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEE----ecCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004885 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----KCQSGATQMRFQPRLGRILAAAIENYISILD 710 (725)
Q Consensus 635 ~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~----~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwD 710 (725)
.+.+|...|.+|+|+|++..+|++++.|+.|+|||+++.+....+ .+...|++++|+|++.+|++++.|+.|+|||
T Consensus 245 ~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd 324 (435)
T 4e54_B 245 NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYS 324 (435)
T ss_dssp CSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEE
T ss_pred EEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEE
Confidence 888999999999999999989999999999999999987654433 3467899999999999999999999999999
Q ss_pred CCCCeEEEEEeCCC
Q 004885 711 VETQVCRLKLQVSH 724 (725)
Q Consensus 711 l~tg~~v~~l~GH~ 724 (725)
++++.+...+.+|.
T Consensus 325 ~~~~~~~~~~~~~~ 338 (435)
T 4e54_B 325 ASQWDCPLGLIPHP 338 (435)
T ss_dssp SSSSSSEEEECCCC
T ss_pred CCCCccceEEeccc
Confidence 99999988888774
No 27
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.95 E-value=4.2e-26 Score=244.66 Aligned_cols=222 Identities=16% Similarity=0.231 Sum_probs=178.2
Q ss_pred ccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885 475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 554 (725)
Q Consensus 475 ~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H 554 (725)
...+...+.++.|..... ......++++|+.|++|++|....... ..........+.+|
T Consensus 17 l~gH~~~V~~~~~~~s~~---------~~~d~~~l~sgs~D~~v~iWd~~~~~~------------~~~~~~~~~~l~~h 75 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQK---------ENEDSPVLISGSRDKTVMIWKLYEEEQ------------NGYFGIPHKALTGH 75 (343)
T ss_dssp EECCSSCEEEEEECCCSS---------TTCCCCEEEEEETTSCEEEEEECSSCC------------SSBSEEEEEEECCC
T ss_pred eccchhhhhheeeEEEee---------cCCCCCEEEEEcCCCEEEEEECCcCCc------------ccccccccchhccC
Confidence 344666778888833211 011335899999999999996543311 11223456778999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE
Q 004885 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~ 634 (725)
...|.+++|+|++.+|++|+.|++|+|||+++++.+..+.+|...|++++|+|++++|++++.|++|++||+... +..
T Consensus 76 ~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~--~~~ 153 (343)
T 2xzm_R 76 NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE--CKF 153 (343)
T ss_dssp SSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC--EEE
T ss_pred CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC--cee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999843 333
Q ss_pred EEe---cCCCCeEEEEEccCCC---------eEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEE
Q 004885 635 TFT---GHSTTVMSLDFHPSKE---------DLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAA 701 (725)
Q Consensus 635 ~~~---~h~~~V~sl~fsP~g~---------~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s 701 (725)
.+. +|...|.+++|+|++. .+|++++.|+.|++||. +..+...+.. ...|.+++|+|++.+|++++
T Consensus 154 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs 232 (343)
T 2xzm_R 154 SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGG 232 (343)
T ss_dssp ECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred eeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEc
Confidence 333 7888999999999872 47889999999999995 4566666654 67899999999999999999
Q ss_pred cCCeEEEEECCC-CeEEEEE
Q 004885 702 IENYISILDVET-QVCRLKL 720 (725)
Q Consensus 702 ~Dg~V~IwDl~t-g~~v~~l 720 (725)
.|+.|+|||+++ ..+...+
T Consensus 233 ~dg~v~iwd~~~~~~~~~~~ 252 (343)
T 2xzm_R 233 KDKKLLIWDILNLTYPQREF 252 (343)
T ss_dssp TTCEEEEEESSCCSSCSEEE
T ss_pred CCCeEEEEECCCCcccceee
Confidence 999999999943 3333333
No 28
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.95 E-value=1.5e-26 Score=271.97 Aligned_cols=220 Identities=16% Similarity=0.227 Sum_probs=188.8
Q ss_pred ccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885 475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 554 (725)
Q Consensus 475 ~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H 554 (725)
...|...++++.|++++. .++++|+.|++|++|...... .........+.+|
T Consensus 378 l~~H~~~V~~v~~~~~~~--------------~~l~s~s~D~~i~~W~~~~~~--------------~~~~~~~~~~~~h 429 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNA--------------DIIVSASRDKSIILWKLTKDD--------------KAYGVAQRRLTGH 429 (694)
T ss_dssp EECCSSCEEEEECCTTCC--------------SEEEEEETTSEEEEEECCCST--------------TCSCEEEEEEECC
T ss_pred cccCCceeEEEEecCCCC--------------CEEEEEeCCCcEEEEEccCCC--------------cccccccceecCC
Confidence 345677788888887553 489999999999999654431 1111345678899
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE
Q 004885 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~ 634 (725)
...|.+++|+|++++|++|+.|++|+|||+.++..+..+.+|...|++++|+|++++|++|+.|++|+|||+.... ..
T Consensus 430 ~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~--~~ 507 (694)
T 3dm0_A 430 SHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC--KY 507 (694)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE--EE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc--ce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987543 22
Q ss_pred EE----ecCCCCeEEEEEccCCC-eEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEE
Q 004885 635 TF----TGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISI 708 (725)
Q Consensus 635 ~~----~~h~~~V~sl~fsP~g~-~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~I 708 (725)
.+ .+|...|.+++|+|++. .++++++.|++|+|||+++++++..+.. ...|++++|+|++.+|++++.|+.|+|
T Consensus 508 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~i 587 (694)
T 3dm0_A 508 TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLL 587 (694)
T ss_dssp EECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEE
T ss_pred eeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 22 46888999999999863 4788999999999999999999988875 677999999999999999999999999
Q ss_pred EECCCCeEEEEEeCCC
Q 004885 709 LDVETQVCRLKLQVSH 724 (725)
Q Consensus 709 wDl~tg~~v~~l~GH~ 724 (725)
||+++++++..+..|.
T Consensus 588 wd~~~~~~~~~~~~~~ 603 (694)
T 3dm0_A 588 WDLAEGKKLYSLEANS 603 (694)
T ss_dssp EETTTTEEEECCBCSS
T ss_pred EECCCCceEEEecCCC
Confidence 9999999998877653
No 29
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.95 E-value=2.2e-26 Score=247.51 Aligned_cols=205 Identities=25% Similarity=0.405 Sum_probs=174.1
Q ss_pred CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (725)
Q Consensus 477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~ 556 (725)
.+...+.++.|+|++. +|++|+.|+.|++|..... ....+..+.+|..
T Consensus 59 ~h~~~v~~~~~sp~g~---------------~l~s~s~D~~v~iw~~~~~-----------------~~~~~~~~~~h~~ 106 (345)
T 3fm0_A 59 GHQRTVRKVAWSPCGN---------------YLASASFDATTCIWKKNQD-----------------DFECVTTLEGHEN 106 (345)
T ss_dssp SCSSCEEEEEECTTSS---------------EEEEEETTSCEEEEEECCC------------------EEEEEEECCCSS
T ss_pred ccCCcEEEEEECCCCC---------------EEEEEECCCcEEEEEccCC-----------------CeEEEEEccCCCC
Confidence 4555677788887765 9999999999999954221 2345678899999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCC---eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-ee
Q 004885 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YS 632 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~---~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~-~~ 632 (725)
.|.+++|+|++++|++|+.|++|+|||+++. .++..+.+|...|.+++|+|++.+|++++.|++|++||+++.. .+
T Consensus 107 ~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~ 186 (345)
T 3fm0_A 107 EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVC 186 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEE
T ss_pred CceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEE
Confidence 9999999999999999999999999999765 4567788999999999999999999999999999999998765 24
Q ss_pred eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC---------------CeeEEEEe--cCCCeEEEEEecCCC
Q 004885 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---------------GSCAGVFK--CQSGATQMRFQPRLG 695 (725)
Q Consensus 633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t---------------~~~v~~~~--~~~~V~sv~fspdg~ 695 (725)
...+.+|...|++|+|+|++. +|++++.|++|+|||+.. ..++..+. +...|.+++|+|++.
T Consensus 187 ~~~~~~h~~~v~~l~~sp~g~-~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~ 265 (345)
T 3fm0_A 187 CATLEGHESTVWSLAFDPSGQ-RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTG 265 (345)
T ss_dssp EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTC
T ss_pred EEEecCCCCceEEEEECCCCC-EEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCC
Confidence 578899999999999999988 677999999999999632 13444444 356799999999999
Q ss_pred EEEEEEcCCeEEEEECCCC
Q 004885 696 RILAAAIENYISILDVETQ 714 (725)
Q Consensus 696 ~Lla~s~Dg~V~IwDl~tg 714 (725)
.|++++.|+.|+||+++.+
T Consensus 266 ~l~s~~~d~~i~vw~~~~~ 284 (345)
T 3fm0_A 266 ALATACGDDAIRVFQEDPN 284 (345)
T ss_dssp CEEEEETTSCEEEEEECTT
T ss_pred EEEEEeCCCeEEEEEeCCC
Confidence 9999999999999998764
No 30
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.95 E-value=4.3e-26 Score=249.72 Aligned_cols=230 Identities=20% Similarity=0.352 Sum_probs=177.1
Q ss_pred CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (725)
Q Consensus 477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~ 556 (725)
.+...+.++.|+|++. ++++|+ |+.+++|...++........+......... ........+..
T Consensus 62 ~h~~~V~~v~fspdg~---------------~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~ 124 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGE---------------YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPEN-LNTSSSPSSDL 124 (393)
T ss_dssp ECSSCCCEEEECTTSS---------------EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCC
T ss_pred CCCCEEEEEEECCCCC---------------EEEEEc-CCcEEEEEecCCCEEEEecCcccccccccc-ccccccCCCce
Confidence 3566788999999886 888876 789999976554321111100000000000 00111123445
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEE
Q 004885 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~ 636 (725)
.|++++|+|++++|++|+.|++|+|||+.+++.+..+.+|...|++++|+|++.+|++++.|++|++||++++. +...+
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~-~~~~~ 203 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-CSLTL 203 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEEE
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe-eEEEE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999876 55555
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe--------cCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 004885 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--------CQSGATQMRFQPRLGRILAAAIENYISI 708 (725)
Q Consensus 637 ~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~--------~~~~V~sv~fspdg~~Lla~s~Dg~V~I 708 (725)
. +...|.+++|+|....+|++++.|+.|++||++++.++..+. +...|++++|+|++.+|++++.|+.|+|
T Consensus 204 ~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~ 282 (393)
T 1erj_A 204 S-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 282 (393)
T ss_dssp E-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred E-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 4 556799999999434478899999999999999998887762 3567999999999999999999999999
Q ss_pred EECCC------------CeEEEEEeCCCC
Q 004885 709 LDVET------------QVCRLKLQVSHS 725 (725)
Q Consensus 709 wDl~t------------g~~v~~l~GH~s 725 (725)
||+++ +.+...+.+|.+
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~ 311 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCEVTYIGHKD 311 (393)
T ss_dssp EEC---------------CEEEEEECCSS
T ss_pred EECCCCCCcccccCCCCCcceEEEecccC
Confidence 99976 456778888863
No 31
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.95 E-value=3.8e-28 Score=261.58 Aligned_cols=214 Identities=16% Similarity=0.185 Sum_probs=175.2
Q ss_pred CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (725)
Q Consensus 478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (725)
+...+.++.|+|++. ++++|+.|+.|++|..... .+..+..+.+|...
T Consensus 10 ~~~~v~~~~~s~~g~---------------~l~~~~~d~~i~iw~~~~~-----------------~~~~~~~~~~h~~~ 57 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRT---------------EFVTTTATNQVELYEQDGN-----------------GWKHARTFSDHDKI 57 (377)
T ss_dssp CSSCCSCCEECSSSS---------------EEECCCSSSCBCEEEEETT-----------------EEEECCCBCCCSSC
T ss_pred CCCcEEEEEECCCCC---------------EEEEecCCCEEEEEEccCC-----------------ceEEEEEEecCCce
Confidence 344677788888776 8999999999999944221 22455677899999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe--e
Q 004885 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--S 632 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~---~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~--~ 632 (725)
|++++|+|++++|++|+.|++|+|||+.++. ....+.+|...|++++|+|++++|++++.|++|++||+++... +
T Consensus 58 v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 137 (377)
T 3dwl_C 58 VTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWV 137 (377)
T ss_dssp EEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCC
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccccee
Confidence 9999999999999999999999999998876 6777889999999999999999999999999999999998752 3
Q ss_pred eEEEec-CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC------------------CCeeEEEEecCCCeEEEEEecC
Q 004885 633 LRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN------------------NGSCAGVFKCQSGATQMRFQPR 693 (725)
Q Consensus 633 l~~~~~-h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~------------------t~~~v~~~~~~~~V~sv~fspd 693 (725)
...+.+ |...|.+++|+|++. +|++++.|+.|++||++ .+.++..+.+...|++++|+|+
T Consensus 138 ~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 216 (377)
T 3dwl_C 138 SKHLKRPLRSTILSLDWHPNNV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPS 216 (377)
T ss_dssp CEEECSSCCSCEEEEEECTTSS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTT
T ss_pred eeEeecccCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCC
Confidence 667777 999999999999987 77799999999999985 3456666655778999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCeE----EEEEeCCC
Q 004885 694 LGRILAAAIENYISILDVETQVC----RLKLQVSH 724 (725)
Q Consensus 694 g~~Lla~s~Dg~V~IwDl~tg~~----v~~l~GH~ 724 (725)
+.+|++++.|+.|+|||++++++ +..+.+|.
T Consensus 217 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 251 (377)
T 3dwl_C 217 GNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQ 251 (377)
T ss_dssp SSCEEEEETTTEEC-CEECSTTSCEEECCCEECSS
T ss_pred CCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCC
Confidence 99999999999999999999977 88888886
No 32
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.95 E-value=1.6e-25 Score=236.06 Aligned_cols=221 Identities=15% Similarity=0.178 Sum_probs=194.6
Q ss_pred cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST 555 (725)
Q Consensus 476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~ 555 (725)
..+...++++.|+|++. ++|++|+.|++|++|+..... .........+++|.
T Consensus 35 ~GH~~~V~~v~~sp~~~--------------~~l~S~s~D~~i~vWd~~~~~--------------~~~~~~~~~l~~h~ 86 (340)
T 4aow_A 35 KGHNGWVTQIATTPQFP--------------DMILSASRDKTIIMWKLTRDE--------------TNYGIPQRALRGHS 86 (340)
T ss_dssp CCCSSCEEEEEECTTCT--------------TEEEEEETTSCEEEEEECCSS--------------SCSEEEEEEECCCS
T ss_pred CCccCCEEEEEEeCCCC--------------CEEEEEcCCCeEEEEECCCCC--------------cccceeeEEEeCCC
Confidence 45777899999999743 389999999999999654431 22234567789999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEE
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~ 635 (725)
..|.+++|+|++++|++++.|+.|++|+............+...+..+.+++++.+|++++.|+.+++||+.........
T Consensus 87 ~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~ 166 (340)
T 4aow_A 87 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ 166 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred CCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEE
Confidence 99999999999999999999999999999999988888889999999999999999999999999999999877655566
Q ss_pred EecCCCCeEEEEEccCCC-eEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004885 636 FTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVET 713 (725)
Q Consensus 636 ~~~h~~~V~sl~fsP~g~-~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~t 713 (725)
+.+|...|..++|++++. .++++++.|+.|++||+++++++..+.. ...|++++|+|++.+|++++.|+.|+|||+++
T Consensus 167 ~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~ 246 (340)
T 4aow_A 167 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 246 (340)
T ss_dssp SSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred eccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc
Confidence 678999999999998754 3678899999999999999999988875 67899999999999999999999999999999
Q ss_pred CeEEEEEeCCC
Q 004885 714 QVCRLKLQVSH 724 (725)
Q Consensus 714 g~~v~~l~GH~ 724 (725)
++++..+.+|.
T Consensus 247 ~~~~~~~~~~~ 257 (340)
T 4aow_A 247 GKHLYTLDGGD 257 (340)
T ss_dssp TEEEEEEECSS
T ss_pred CceeeeecCCc
Confidence 99999998774
No 33
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.95 E-value=6e-26 Score=245.46 Aligned_cols=197 Identities=21% Similarity=0.308 Sum_probs=171.8
Q ss_pred CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (725)
Q Consensus 478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (725)
+...+..+.|++++. .+++|+.|++|++|+...+ +.+..+.+|...
T Consensus 153 h~~~v~~~~~~~~~~---------------~l~t~s~D~~v~lwd~~~~-------------------~~~~~~~~h~~~ 198 (354)
T 2pbi_B 153 HTNYLSACSFTNSDM---------------QILTASGDGTCALWDVESG-------------------QLLQSFHGHGAD 198 (354)
T ss_dssp CSSCEEEEEECSSSS---------------EEEEEETTSEEEEEETTTC-------------------CEEEEEECCSSC
T ss_pred cCCcEEEEEEeCCCC---------------EEEEEeCCCcEEEEeCCCC-------------------eEEEEEcCCCCC
Confidence 445566777777665 8899999999999954322 456778899999
Q ss_pred eEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEE
Q 004885 558 VESCHFSP--DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (725)
Q Consensus 558 V~~i~fSp--dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~ 635 (725)
|.+++|+| ++++|++|+.|++|++||+++++++..+.+|...|++++|+|++.+|++++.|++|++||++... .+..
T Consensus 199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~-~~~~ 277 (354)
T 2pbi_B 199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR-EVAI 277 (354)
T ss_dssp EEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEE
T ss_pred eEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-EEEE
Confidence 99999988 57899999999999999999999999999999999999999999999999999999999999876 4555
Q ss_pred EecC--CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004885 636 FTGH--STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILD 710 (725)
Q Consensus 636 ~~~h--~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwD 710 (725)
+..+ ...+.+++|+|++. ++++++.|+.|+|||+.++.++..+.. ...|++++|+|++.+|++++.|++|+||+
T Consensus 278 ~~~~~~~~~~~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 278 YSKESIIFGASSVDFSLSGR-LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ECCTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EcCCCcccceeEEEEeCCCC-EEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 5433 35789999999988 677899999999999999998888765 67899999999999999999999999996
No 34
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.6e-25 Score=234.96 Aligned_cols=216 Identities=11% Similarity=0.088 Sum_probs=186.3
Q ss_pred cccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecC
Q 004885 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (725)
Q Consensus 474 l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 553 (725)
....+...++++.|++++. ++++|+.|+.|++|+.... +.+..+.+
T Consensus 27 ~l~~h~~~v~~~~~s~~~~---------------~l~~~~~dg~i~vwd~~~~-------------------~~~~~~~~ 72 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGD---------------LLFSCSKDSSASVWYSLNG-------------------ERLGTLDG 72 (369)
T ss_dssp EEECCSSCEEEEEECTTSC---------------EEEEEESSSCEEEEETTTC-------------------CEEEEECC
T ss_pred EEEEeeceEEEEEEcCCCC---------------EEEEEeCCCEEEEEeCCCc-------------------hhhhhhhh
Confidence 3455677899999999886 8999999999999954322 45677889
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCC-----------------------------------
Q 004885 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ----------------------------------- 598 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~----------------------------------- 598 (725)
|...|.+++|+|++++|++++.|+.|++||+.+++.+..+. |..
T Consensus 73 h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~ 151 (369)
T 3zwl_B 73 HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIER 151 (369)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEE
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecC
Confidence 99999999999999999999999999999998876655543 222
Q ss_pred -------------------------CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCC
Q 004885 599 -------------------------WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 653 (725)
Q Consensus 599 -------------------------~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~ 653 (725)
.|.+++|+|++++|++++.|+.|++||+++....+..+..|...|.+++|+|++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 231 (369)
T 3zwl_B 152 DSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLT 231 (369)
T ss_dssp CTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred CccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCC
Confidence 6667777777778888888899999999885557888889999999999999988
Q ss_pred eEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCC--------------eEEEEECCCCeEEEE
Q 004885 654 DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN--------------YISILDVETQVCRLK 719 (725)
Q Consensus 654 ~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg--------------~V~IwDl~tg~~v~~ 719 (725)
+|++++.|+.|++||+++++++..+.....+.+++|+|++.++++++.++ .|++||+.+++++..
T Consensus 232 -~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 310 (369)
T 3zwl_B 232 -YFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGR 310 (369)
T ss_dssp -EEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEE
T ss_pred -EEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhh
Confidence 66788899999999999999999999889999999999999999999888 899999999999999
Q ss_pred EeCCCC
Q 004885 720 LQVSHS 725 (725)
Q Consensus 720 l~GH~s 725 (725)
+.+|.+
T Consensus 311 ~~~~~~ 316 (369)
T 3zwl_B 311 VQGHFG 316 (369)
T ss_dssp EECCSS
T ss_pred eecccC
Confidence 999864
No 35
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.95 E-value=4.9e-26 Score=246.26 Aligned_cols=214 Identities=14% Similarity=0.140 Sum_probs=183.1
Q ss_pred CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (725)
Q Consensus 477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~ 556 (725)
.+...+.++.|++++. +++++|+.|+.|++|...... ......+.+|..
T Consensus 71 ~h~~~v~~~~~~~~~~--------------~~l~s~~~dg~i~iwd~~~~~-----------------~~~~~~~~~h~~ 119 (383)
T 3ei3_B 71 PFDRRVTSLEWHPTHP--------------TTVAVGSKGGDIILWDYDVQN-----------------KTSFIQGMGPGD 119 (383)
T ss_dssp CCSSCEEEEEECSSCT--------------TEEEEEEBTSCEEEEETTSTT-----------------CEEEECCCSTTC
T ss_pred CCCCCEEEEEECCCCC--------------CEEEEEcCCCeEEEEeCCCcc-----------------cceeeecCCcCC
Confidence 4456789999999872 389999999999999654321 112223347999
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEeccC---CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004885 557 KVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEH---TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (725)
Q Consensus 557 ~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H---~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~ 632 (725)
.|.+++|+| ++++|++++.|+.|++||+.+ ..+..+..| ...|.+++|+|++.+|++++.|+.|++||++ +. +
T Consensus 120 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~-~ 196 (383)
T 3ei3_B 120 AITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GH-E 196 (383)
T ss_dssp BEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SC-E
T ss_pred ceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CC-E
Confidence 999999999 789999999999999999986 555555444 4889999999999999999999999999994 44 7
Q ss_pred eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC----CeeEEEEecCCCeEEEEEec-CCCEEEEEEcCCeEE
Q 004885 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFKCQSGATQMRFQP-RLGRILAAAIENYIS 707 (725)
Q Consensus 633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t----~~~v~~~~~~~~V~sv~fsp-dg~~Lla~s~Dg~V~ 707 (725)
+..+.+|...|.+++|+|++.++|++++.|+.|++||+++ +.++..+.+...|++++|+| ++.+|++++.|+.|+
T Consensus 197 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~ 276 (383)
T 3ei3_B 197 IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIR 276 (383)
T ss_dssp EEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEE
T ss_pred EEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEE
Confidence 8889999999999999999987888999999999999998 77888888888999999999 999999999999999
Q ss_pred EEECCCCeEEEEEeCCC
Q 004885 708 ILDVETQVCRLKLQVSH 724 (725)
Q Consensus 708 IwDl~tg~~v~~l~GH~ 724 (725)
|||+++++++..+.+|.
T Consensus 277 iwd~~~~~~~~~~~~~~ 293 (383)
T 3ei3_B 277 VYSSYDWSKPDQIIIHP 293 (383)
T ss_dssp EEETTBTTSCSEEEECC
T ss_pred EEECCCCcccccccccc
Confidence 99999998888877663
No 36
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.95 E-value=8.2e-26 Score=262.31 Aligned_cols=205 Identities=22% Similarity=0.313 Sum_probs=172.1
Q ss_pred eeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEE
Q 004885 482 KSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESC 561 (725)
Q Consensus 482 ~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i 561 (725)
...+.|+|+|. .+++++ ++.|++|...+. .....+.+|...|+++
T Consensus 21 ~~~~~~spdg~---------------~l~~~~-~~~v~l~~~~~~-------------------~~~~~~~~h~~~v~~~ 65 (611)
T 1nr0_A 21 AVVLGNTPAGD---------------KIQYCN-GTSVYTVPVGSL-------------------TDTEIYTEHSHQTTVA 65 (611)
T ss_dssp CCCCEECTTSS---------------EEEEEE-TTEEEEEETTCS-------------------SCCEEECCCSSCEEEE
T ss_pred eeEEeeCCCCC---------------EEEeCC-CCEEEEecCCCc-------------------ccCeEecCCCCceEEE
Confidence 45567888776 788877 579999954322 3456778999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCe--EEEE--------------------------------------------ecc
Q 004885 562 HFSPDGKLLATGGHDKKAVLWCTESFT--VKST--------------------------------------------LEE 595 (725)
Q Consensus 562 ~fSpdg~~LaSgs~Dg~V~IWdl~~~~--~i~~--------------------------------------------l~~ 595 (725)
+|+|+|++||+|+.|++|+|||+.+++ .... +.+
T Consensus 66 ~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~g 145 (611)
T 1nr0_A 66 KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTG 145 (611)
T ss_dssp EECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCC
T ss_pred EECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecC
Confidence 999999999999999999999985321 1222 235
Q ss_pred CCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe
Q 004885 596 HTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674 (725)
Q Consensus 596 H~~~V~~IafsPd~~-~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~ 674 (725)
|...|++++|+|++. +|++|+.|++|++||..+.. ++..+.+|...|.+++|+|++. +|++++.|++|++||+.+++
T Consensus 146 h~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~-~~~~l~~H~~~V~~v~fspdg~-~las~s~D~~i~lwd~~~g~ 223 (611)
T 1nr0_A 146 QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-FKSTFGEHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGT 223 (611)
T ss_dssp CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCC
T ss_pred CCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe-EeeeeccccCceEEEEECCCCC-EEEEEECCCcEEEEECCCCc
Confidence 666777777777765 58999999999999998766 7888999999999999999988 77899999999999999999
Q ss_pred eEEEEe--------cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885 675 CAGVFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVS 723 (725)
Q Consensus 675 ~v~~~~--------~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH 723 (725)
++..+. +...|.+++|+|++.+|++++.|++|+|||+++++++.++..+
T Consensus 224 ~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~ 280 (611)
T 1nr0_A 224 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 280 (611)
T ss_dssp EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred EeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCC
Confidence 988883 5678999999999999999999999999999999999988754
No 37
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.95 E-value=3e-26 Score=250.00 Aligned_cols=199 Identities=15% Similarity=0.182 Sum_probs=171.3
Q ss_pred CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (725)
Q Consensus 505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl 584 (725)
..+++++|+.|+.|++|... .......+.+|.+.|++++|+|++++|++|+.|++|++||+
T Consensus 108 ~~~~l~~~~~dg~i~iwd~~-------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~ 168 (420)
T 3vl1_A 108 QMRRFILGTTEGDIKVLDSN-------------------FNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV 168 (420)
T ss_dssp SSCEEEEEETTSCEEEECTT-------------------SCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CCCEEEEEECCCCEEEEeCC-------------------CcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 34589999999999999432 22445667899999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEec---CCCCeEEEEE-------------
Q 004885 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG---HSTTVMSLDF------------- 648 (725)
Q Consensus 585 ~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~---h~~~V~sl~f------------- 648 (725)
.+++.+..+.+|...|++++|+|++.+|++++.|++|++||++++. ++..+.. |...|.+++|
T Consensus 169 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 247 (420)
T 3vl1_A 169 KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT-TIHTFNRKENPHDGVNSIALFVGTDRQLHEIST 247 (420)
T ss_dssp TTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE-EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCC
T ss_pred CCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc-eeEEeecCCCCCCCccEEEEecCCcceeeeccc
Confidence 9999999999999999999999999999999999999999999887 6777764 4445555554
Q ss_pred --------ccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeEEEEEecCCC-EEEEEEcCCeEEEEECCCCe-E
Q 004885 649 --------HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLG-RILAAAIENYISILDVETQV-C 716 (725)
Q Consensus 649 --------sP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~-~Lla~s~Dg~V~IwDl~tg~-~ 716 (725)
+|++. ++++++.||.|++||++++..+..+.. ...|++++|+|++. +|++++.|+.|+|||+++++ +
T Consensus 248 ~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~ 326 (420)
T 3vl1_A 248 SKKNNLEFGTYGK-YVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP 326 (420)
T ss_dssp CCCCTTCSSCTTE-EEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC
T ss_pred CcccceEEcCCCC-EEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc
Confidence 67766 677899999999999999988887764 56799999999998 99999999999999999984 4
Q ss_pred EEEEeCCC
Q 004885 717 RLKLQVSH 724 (725)
Q Consensus 717 v~~l~GH~ 724 (725)
+..+.+|+
T Consensus 327 ~~~~~~~~ 334 (420)
T 3vl1_A 327 VGEFLINE 334 (420)
T ss_dssp SEEEEEST
T ss_pred hhhhhccC
Confidence 78888754
No 38
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.95 E-value=1.5e-25 Score=239.29 Aligned_cols=214 Identities=17% Similarity=0.222 Sum_probs=185.1
Q ss_pred CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (725)
Q Consensus 478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (725)
+...+.++.|++++. ++++|+.|+.|++|.... ..+..+..+.+|...
T Consensus 7 ~~~~i~~~~~s~~~~---------------~l~~~~~d~~v~i~~~~~-----------------~~~~~~~~~~~h~~~ 54 (372)
T 1k8k_C 7 LVEPISCHAWNKDRT---------------QIAICPNNHEVHIYEKSG-----------------NKWVQVHELKEHNGQ 54 (372)
T ss_dssp CSSCCCEEEECTTSS---------------EEEEECSSSEEEEEEEET-----------------TEEEEEEEEECCSSC
T ss_pred cCCCeEEEEECCCCC---------------EEEEEeCCCEEEEEeCCC-----------------CcEEeeeeecCCCCc
Confidence 556788999999876 899999999999994322 223467788899999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe---e
Q 004885 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---S 632 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~--l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~---~ 632 (725)
|++++|+|++++|++++.|+.|++||+++++.... +..|...|.+++|+|++.+|++++.|+.|++||++.... .
T Consensus 55 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 134 (372)
T 1k8k_C 55 VTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC 134 (372)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE
T ss_pred ccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceee
Confidence 99999999999999999999999999988775443 467999999999999999999999999999999998762 2
Q ss_pred eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEEC------------------CCCeeEEEEec-CCCeEEEEEecC
Q 004885 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI------------------NNGSCAGVFKC-QSGATQMRFQPR 693 (725)
Q Consensus 633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl------------------~t~~~v~~~~~-~~~V~sv~fspd 693 (725)
.....+|...|.+++|+|++. +|++++.|+.|++||+ ..+.++..+.. ...|.+++|+|+
T Consensus 135 ~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 213 (372)
T 1k8k_C 135 KHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN 213 (372)
T ss_dssp EEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS
T ss_pred eeeecccCCCeeEEEEcCCCC-EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCC
Confidence 333467889999999999987 6778999999999995 46778888764 677999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885 694 LGRILAAAIENYISILDVETQVCRLKLQVSH 724 (725)
Q Consensus 694 g~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~ 724 (725)
+.+|++++.|+.|++||+++++++..+.+|.
T Consensus 214 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 244 (372)
T 1k8k_C 214 GSRVAWVSHDSTVCLADADKKMAVATLASET 244 (372)
T ss_dssp SSEEEEEETTTEEEEEEGGGTTEEEEEECSS
T ss_pred CCEEEEEeCCCEEEEEECCCCceeEEEccCC
Confidence 9999999999999999999999999999886
No 39
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.94 E-value=6.3e-25 Score=230.47 Aligned_cols=213 Identities=17% Similarity=0.279 Sum_probs=184.7
Q ss_pred CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEE--ecCC
Q 004885 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL--IPAS 554 (725)
Q Consensus 477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~H 554 (725)
.+...+.++.|++++. ++++++ |+.|++|....... ...+.. ..+|
T Consensus 49 ~h~~~v~~~~~~~~~~---------------~l~~~~-dg~i~iw~~~~~~~----------------~~~~~~~~~~~~ 96 (337)
T 1gxr_A 49 NHGEVVCAVTISNPTR---------------HVYTGG-KGCVKVWDISHPGN----------------KSPVSQLDCLNR 96 (337)
T ss_dssp CCSSCCCEEEECSSSS---------------EEEEEC-BSEEEEEETTSTTC----------------CSCSEEEECSCT
T ss_pred cCCCceEEEEEecCCc---------------EEEEcC-CCeEEEEECCCCCc----------------eeeeecccccCC
Confidence 4566788899998776 888888 99999996644321 111222 2378
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004885 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~--~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~ 632 (725)
...|.+++|+|++++|++++.|+.|++||+++++ ....+..|...|++++|+|++++|++++.|+.|++||++++. .
T Consensus 97 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-~ 175 (337)
T 1gxr_A 97 DNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-L 175 (337)
T ss_dssp TSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-E
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc-e
Confidence 9999999999999999999999999999999876 667788899999999999999999999999999999999877 7
Q ss_pred eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE 712 (725)
Q Consensus 633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~ 712 (725)
+..+.+|...|.+++|+|++. ++++++.|+.|++||+++++++..+.+...+.+++|+|++.+|++++.|+.|++||++
T Consensus 176 ~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~ 254 (337)
T 1gxr_A 176 VRQFQGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVN 254 (337)
T ss_dssp EEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eeeeecccCceEEEEECCCCC-EEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 888899999999999999987 6678889999999999999999999888899999999999999999999999999999
Q ss_pred CCeEEEEEeCCC
Q 004885 713 TQVCRLKLQVSH 724 (725)
Q Consensus 713 tg~~v~~l~GH~ 724 (725)
+++.. .+.+|.
T Consensus 255 ~~~~~-~~~~~~ 265 (337)
T 1gxr_A 255 KPDKY-QLHLHE 265 (337)
T ss_dssp SSCEE-EECCCS
T ss_pred CCCeE-EEcCCc
Confidence 88754 566664
No 40
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.94 E-value=6.8e-26 Score=248.97 Aligned_cols=222 Identities=14% Similarity=0.251 Sum_probs=182.9
Q ss_pred CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC--
Q 004885 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-- 555 (725)
Q Consensus 478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~-- 555 (725)
....++++.|++++. +|++|+.|+.|++|......... ......+..+..+.+|.
T Consensus 27 ~~~~V~~v~~s~~g~---------------~la~g~~dg~v~iw~~~~~~~~~--------~~~~~~~~~~~~~~~h~~~ 83 (447)
T 3dw8_B 27 EADIISTVEFNHSGE---------------LLATGDKGGRVVIFQQEQENKIQ--------SHSRGEYNVYSTFQSHEPE 83 (447)
T ss_dssp GGGSEEEEEECSSSS---------------EEEEEETTSEEEEEEECC-------------CCCCCCEEEEEEEECCCCE
T ss_pred ccCcEEEEEECCCCC---------------EEEEEcCCCeEEEEEecCCCCCC--------cccccceeEeccccccccc
Confidence 456789999999887 99999999999999765442110 01223455677888998
Q ss_pred ----------CCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCeEE---------------------------------
Q 004885 556 ----------SKVESCHFSPDG--KLLATGGHDKKAVLWCTESFTVK--------------------------------- 590 (725)
Q Consensus 556 ----------~~V~~i~fSpdg--~~LaSgs~Dg~V~IWdl~~~~~i--------------------------------- 590 (725)
+.|++++|+|++ .+|++++.|++|+|||+.+....
T Consensus 84 ~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 163 (447)
T 3dw8_B 84 FDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLM 163 (447)
T ss_dssp EEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEE
T ss_pred ccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchhee
Confidence 889999999998 79999999999999998764331
Q ss_pred ------EE-eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE-------EEecCCCCeEEEEEccCCCeEE
Q 004885 591 ------ST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR-------TFTGHSTTVMSLDFHPSKEDLL 656 (725)
Q Consensus 591 ------~~-l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~-------~~~~h~~~V~sl~fsP~g~~ll 656 (725)
.. +.+|...|++++|+|++.+|++| .|++|++||+++...++. .+.+|...|.+++|+|++..+|
T Consensus 164 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 242 (447)
T 3dw8_B 164 VEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTF 242 (447)
T ss_dssp EEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEE
T ss_pred eeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEE
Confidence 12 36899999999999999999998 799999999995443444 2568999999999999985588
Q ss_pred EEEeCCCcEEEEECCCCee----EEEEecCC-------------CeEEEEEecCCCEEEEEEcCCeEEEEECCC-CeEEE
Q 004885 657 CSCDNNSEIRYWSINNGSC----AGVFKCQS-------------GATQMRFQPRLGRILAAAIENYISILDVET-QVCRL 718 (725)
Q Consensus 657 aSgs~Dg~I~IwDl~t~~~----v~~~~~~~-------------~V~sv~fspdg~~Lla~s~Dg~V~IwDl~t-g~~v~ 718 (725)
++++.||.|++||++++.+ +..+..+. .|.+++|+|++.+|++++. +.|+|||+++ ++++.
T Consensus 243 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~ 321 (447)
T 3dw8_B 243 VYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVE 321 (447)
T ss_dssp EEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSC
T ss_pred EEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccc
Confidence 8999999999999999886 67776533 8999999999999999888 9999999998 89999
Q ss_pred EEeCCC
Q 004885 719 KLQVSH 724 (725)
Q Consensus 719 ~l~GH~ 724 (725)
.+.+|.
T Consensus 322 ~~~~~~ 327 (447)
T 3dw8_B 322 TYQVHE 327 (447)
T ss_dssp CEESCG
T ss_pred eeeccc
Confidence 999885
No 41
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.94 E-value=3.4e-25 Score=237.56 Aligned_cols=201 Identities=23% Similarity=0.383 Sum_probs=165.6
Q ss_pred CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (725)
Q Consensus 478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (725)
+...+.++.|++++. ++++|+.|++|++|+...+ +.+..+.+|...
T Consensus 75 h~~~V~~~~~~~~~~---------------~l~s~s~D~~v~lwd~~~~-------------------~~~~~~~~h~~~ 120 (343)
T 2xzm_R 75 HNHFVSDLALSQENC---------------FAISSSWDKTLRLWDLRTG-------------------TTYKRFVGHQSE 120 (343)
T ss_dssp CSSCEEEEEECSSTT---------------EEEEEETTSEEEEEETTSS-------------------CEEEEEECCCSC
T ss_pred CCCceEEEEECCCCC---------------EEEEEcCCCcEEEEECCCC-------------------cEEEEEcCCCCc
Confidence 444566667766654 8999999999999954322 456678899999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec---cCCCCeEEEEEcCCC----------CEEEEEeCCCeEEEE
Q 004885 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVRFSPSL----------SRLATSSADRTVRVW 624 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~---~H~~~V~~IafsPd~----------~~Lasgs~DgtIrvW 624 (725)
|++++|+|++++|++|+.|++|++||+... ....+. +|...|.+++|+|++ .+|++++.|++|++|
T Consensus 121 v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 199 (343)
T 2xzm_R 121 VYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVW 199 (343)
T ss_dssp EEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEE
T ss_pred EEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEE
Confidence 999999999999999999999999999743 333333 788999999999986 789999999999999
Q ss_pred ECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC-CCeeEEEEecCCCeEEEEEecCCCEEEEEEcC
Q 004885 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 703 (725)
Q Consensus 625 Dl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~-t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~D 703 (725)
|.. .. ....+.+|...|.+++|+|++. +|++++.|+.|+|||+. ...+...+.....|.+++|+|++.++ +++.|
T Consensus 200 d~~-~~-~~~~~~~h~~~v~~~~~s~~g~-~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~l-a~~~d 275 (343)
T 2xzm_R 200 NTN-FQ-IRYTFKAHESNVNHLSISPNGK-YIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWV-AVGTD 275 (343)
T ss_dssp ETT-TE-EEEEEECCSSCEEEEEECTTSS-EEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEE-EEEES
T ss_pred cCC-Cc-eeEEEcCccccceEEEECCCCC-EEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEE-EEECC
Confidence 953 33 6778899999999999999988 67799999999999994 45555666666789999999997655 56678
Q ss_pred CeEEEEECCCCeEE
Q 004885 704 NYISILDVETQVCR 717 (725)
Q Consensus 704 g~V~IwDl~tg~~v 717 (725)
+.|+|||+.+++.+
T Consensus 276 ~~v~iw~~~~~~~~ 289 (343)
T 2xzm_R 276 QGVKIFNLMTQSKA 289 (343)
T ss_dssp SCEEEEESSSCCSC
T ss_pred CCEEEEEeCCCCCC
Confidence 89999999887543
No 42
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.94 E-value=2.9e-25 Score=233.52 Aligned_cols=189 Identities=15% Similarity=0.273 Sum_probs=158.1
Q ss_pred cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEEC
Q 004885 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKKAVLWCT 584 (725)
Q Consensus 507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpd--g~~LaSgs~Dg~V~IWdl 584 (725)
.++++|+.|++|++|+...+ .+..+..+.+|...|.+++|+|+ +.+|++|+.|++|++||+
T Consensus 68 ~~l~s~s~D~~v~iWd~~~~-----------------~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~ 130 (297)
T 2pm7_B 68 TILASCSYDGKVMIWKEENG-----------------RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEF 130 (297)
T ss_dssp SEEEEEETTTEEEEEEBSSS-----------------CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEB
T ss_pred CEEEEEcCCCEEEEEEcCCC-----------------ceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEe
Confidence 48999999999999965322 11234556789999999999997 889999999999999999
Q ss_pred CCCe--EEEEeccCCCCeEEEEEcCC-------------CCEEEEEeCCCeEEEEECCCCCe---eeEEEecCCCCeEEE
Q 004885 585 ESFT--VKSTLEEHTQWITDVRFSPS-------------LSRLATSSADRTVRVWDTENPDY---SLRTFTGHSTTVMSL 646 (725)
Q Consensus 585 ~~~~--~i~~l~~H~~~V~~IafsPd-------------~~~Lasgs~DgtIrvWDl~~~~~---~l~~~~~h~~~V~sl 646 (725)
++.. ....+.+|...|++++|+|+ +++|++|+.|++|+|||+++... .+..+.+|...|.+|
T Consensus 131 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v 210 (297)
T 2pm7_B 131 KENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 210 (297)
T ss_dssp CSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEE
T ss_pred cCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEE
Confidence 8753 24567899999999999996 47999999999999999987552 456788999999999
Q ss_pred EEccCC--CeEEEEEeCCCcEEEEECCCCe--e-EEEE---ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885 647 DFHPSK--EDLLCSCDNNSEIRYWSINNGS--C-AGVF---KCQSGATQMRFQPRLGRILAAAIENYISILDVE 712 (725)
Q Consensus 647 ~fsP~g--~~llaSgs~Dg~I~IwDl~t~~--~-v~~~---~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~ 712 (725)
+|+|++ ..+|++++.|++|+|||+++.. . ...+ .+...|.+++|+|++.+|++++.|+.|+||+..
T Consensus 211 ~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 211 AWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 999996 4688999999999999998743 1 2222 235679999999999999999999999999987
No 43
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.94 E-value=2.6e-25 Score=261.47 Aligned_cols=211 Identities=25% Similarity=0.372 Sum_probs=181.2
Q ss_pred cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST 555 (725)
Q Consensus 476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~ 555 (725)
..+...+.++.|++++. ++++|+.|+.|++|+...+ ..+..+.+|.
T Consensus 427 ~~h~~~v~~v~~s~~g~---------------~l~sgs~Dg~v~vwd~~~~-------------------~~~~~~~~h~ 472 (694)
T 3dm0_A 427 TGHSHFVEDVVLSSDGQ---------------FALSGSWDGELRLWDLAAG-------------------VSTRRFVGHT 472 (694)
T ss_dssp ECCSSCEEEEEECTTSS---------------EEEEEETTSEEEEEETTTT-------------------EEEEEEECCS
T ss_pred cCCCCcEEEEEECCCCC---------------EEEEEeCCCcEEEEECCCC-------------------cceeEEeCCC
Confidence 34555677777877665 9999999999999954322 4556788999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe---ccCCCCeEEEEEcCCC--CEEEEEeCCCeEEEEECCCCC
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL---EEHTQWITDVRFSPSL--SRLATSSADRTVRVWDTENPD 630 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l---~~H~~~V~~IafsPd~--~~Lasgs~DgtIrvWDl~~~~ 630 (725)
..|++++|+|++++|++|+.|++|+|||+......... .+|...|.+++|+|++ ..|++++.|++|++||+++..
T Consensus 473 ~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~ 552 (694)
T 3dm0_A 473 KDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK 552 (694)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC
T ss_pred CCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc
Confidence 99999999999999999999999999998765443332 4688999999999986 689999999999999999887
Q ss_pred eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004885 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD 710 (725)
Q Consensus 631 ~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwD 710 (725)
+...+.+|.+.|++|+|+|++. +|++|+.|+.|+|||+++++++..+.....|.+++|+|++.+| +++.|+.|+|||
T Consensus 553 -~~~~~~~h~~~v~~v~~spdg~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~~~i~iwd 629 (694)
T 3dm0_A 553 -LRSTLAGHTGYVSTVAVSPDGS-LCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWL-CAATEHGIKIWD 629 (694)
T ss_dssp -EEEEECCCSSCEEEEEECTTSS-EEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEE-EEEETTEEEEEE
T ss_pred -EEEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEE-EEEcCCCEEEEE
Confidence 7889999999999999999988 7789999999999999999999888888889999999996655 455677899999
Q ss_pred CCCCeEEEEEeCC
Q 004885 711 VETQVCRLKLQVS 723 (725)
Q Consensus 711 l~tg~~v~~l~GH 723 (725)
+++++++..+..|
T Consensus 630 ~~~~~~~~~~~~~ 642 (694)
T 3dm0_A 630 LESKSIVEDLKVD 642 (694)
T ss_dssp TTTTEEEEEECCC
T ss_pred CCCCCChhhhccc
Confidence 9999999888754
No 44
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.94 E-value=3.2e-26 Score=243.21 Aligned_cols=206 Identities=14% Similarity=0.175 Sum_probs=170.4
Q ss_pred cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST 555 (725)
Q Consensus 476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~ 555 (725)
..+...+.++.|++++. +|++|+.|++|++|+...+ ....+..+++|.
T Consensus 10 ~~H~~~V~~v~~s~~g~---------------~lasgs~D~~v~lwd~~~~-----------------~~~~~~~l~gH~ 57 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGT---------------RLATCSSDRSVKIFDVRNG-----------------GQILIADLRGHE 57 (316)
T ss_dssp ----CCEEEEEECGGGC---------------EEEEEETTTEEEEEEEETT-----------------EEEEEEEEECCS
T ss_pred ccccCeEEEeeEcCCCC---------------EEEEEeCCCeEEEEEecCC-----------------CcEEEEEEcCCC
Confidence 34667889999999886 8999999999999954221 123456788999
Q ss_pred CCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCC--eEEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCC
Q 004885 556 SKVESCHFSP--DGKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENP 629 (725)
Q Consensus 556 ~~V~~i~fSp--dg~~LaSgs~Dg~V~IWdl~~~--~~i~~l~~H~~~V~~IafsPd--~~~Lasgs~DgtIrvWDl~~~ 629 (725)
+.|++++|++ ++++|++|+.|++|+|||++++ ..+..+.+|...|++++|+|+ +.+|++|+.|++|++||++..
T Consensus 58 ~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~ 137 (316)
T 3bg1_A 58 GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE 137 (316)
T ss_dssp SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence 9999999986 4899999999999999999876 466788899999999999997 789999999999999999876
Q ss_pred Ce--eeEEEecCCCCeEEEEEccCC----------------CeEEEEEeCCCcEEEEECCCC---eeEEEEec-CCCeEE
Q 004885 630 DY--SLRTFTGHSTTVMSLDFHPSK----------------EDLLCSCDNNSEIRYWSINNG---SCAGVFKC-QSGATQ 687 (725)
Q Consensus 630 ~~--~l~~~~~h~~~V~sl~fsP~g----------------~~llaSgs~Dg~I~IwDl~t~---~~v~~~~~-~~~V~s 687 (725)
.. ....+.+|...|.+++|+|+. ..+|++++.|+.|++||++.. .++..+.. ...|.+
T Consensus 138 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~ 217 (316)
T 3bg1_A 138 GQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRD 217 (316)
T ss_dssp SCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEE
T ss_pred CCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEE
Confidence 42 234567899999999999973 137889999999999999865 35555554 567999
Q ss_pred EEEecCC----CEEEEEEcCCeEEEEECCC
Q 004885 688 MRFQPRL----GRILAAAIENYISILDVET 713 (725)
Q Consensus 688 v~fspdg----~~Lla~s~Dg~V~IwDl~t 713 (725)
++|+|++ .+|++++.|++|+|||+++
T Consensus 218 v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 218 VAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp EECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred EEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 9999986 7899999999999999986
No 45
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.94 E-value=2.4e-25 Score=242.11 Aligned_cols=209 Identities=18% Similarity=0.193 Sum_probs=161.7
Q ss_pred CeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEE
Q 004885 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560 (725)
Q Consensus 481 ~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~ 560 (725)
-+.+++|+|||... .+++|+.|+.|++|+... ...+..+. |.+.|++
T Consensus 135 ~~~~v~fSpDg~~l-------------a~as~~~d~~i~iwd~~~-------------------~~~~~~~~-~~~~V~~ 181 (365)
T 4h5i_A 135 YTKLVYISREGTVA-------------AIASSKVPAIMRIIDPSD-------------------LTEKFEIE-TRGEVKD 181 (365)
T ss_dssp CEEEEEECTTSSCE-------------EEEESCSSCEEEEEETTT-------------------TEEEEEEE-CSSCCCE
T ss_pred CEEEEEEcCCCCEE-------------EEEECCCCCEEEEeECCC-------------------CcEEEEeC-CCCceEE
Confidence 35678899988611 245677899999995432 23444443 7788999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeEEE--EeccCCCCeEEEEEcCCCCEEEEEeCCC----eEEEEECCCCCe---
Q 004885 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSADR----TVRVWDTENPDY--- 631 (725)
Q Consensus 561 i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~--~l~~H~~~V~~IafsPd~~~Lasgs~Dg----tIrvWDl~~~~~--- 631 (725)
++|+|||++|++++.| .+++|+..++..+. ...+|...|.+++|+|++.++++++.|+ ++++||+.....
T Consensus 182 v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~ 260 (365)
T 4h5i_A 182 LHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVL 260 (365)
T ss_dssp EEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEE
T ss_pred EEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecce
Confidence 9999999999999855 56666666665543 3457889999999999999999999887 688999876652
Q ss_pred eeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe--cCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 004885 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISIL 709 (725)
Q Consensus 632 ~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~--~~~~V~sv~fspdg~~Lla~s~Dg~V~Iw 709 (725)
....+.+|...|++|+|+|+|. +||+|+.|++|+|||+++++++..+. |...|++|+|+|||.+|++++.|++|+||
T Consensus 261 ~~~~~~~~~~~V~~~~~Spdg~-~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw 339 (365)
T 4h5i_A 261 RSKQVTNRFKGITSMDVDMKGE-LAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHII 339 (365)
T ss_dssp EEEEEESSCSCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred eeeeecCCCCCeEeEEECCCCC-ceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 2356778999999999999998 78899999999999999999998874 46789999999999999999999999999
Q ss_pred ECCCC--------eEEEEEeCCC
Q 004885 710 DVETQ--------VCRLKLQVSH 724 (725)
Q Consensus 710 Dl~tg--------~~v~~l~GH~ 724 (725)
|+... +.+..|+-|+
T Consensus 340 ~ip~~~~~~~s~~~~l~kl~~~~ 362 (365)
T 4h5i_A 340 KLPLNYANYTSMKQKISKLEHHH 362 (365)
T ss_dssp ECCTTTTC---------------
T ss_pred EcCCCCcCccCccccceeeeccc
Confidence 99643 4455555543
No 46
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.94 E-value=9.4e-25 Score=239.00 Aligned_cols=211 Identities=17% Similarity=0.298 Sum_probs=184.2
Q ss_pred CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (725)
Q Consensus 478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (725)
+...+.++.|++++. ++++|+.|+.|++|..... +.+..+.+|...
T Consensus 133 ~~~~v~~v~~s~~~~---------------~l~~~~~dg~i~iwd~~~~-------------------~~~~~~~~~~~~ 178 (401)
T 4aez_A 133 ESTYVASVKWSHDGS---------------FLSVGLGNGLVDIYDVESQ-------------------TKLRTMAGHQAR 178 (401)
T ss_dssp TTCCEEEEEECTTSS---------------EEEEEETTSCEEEEETTTC-------------------CEEEEECCCSSC
T ss_pred CCCCEEEEEECCCCC---------------EEEEECCCCeEEEEECcCC-------------------eEEEEecCCCCc
Confidence 345566667776554 8999999999999954322 456677899999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEE
Q 004885 558 VESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~-~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~ 636 (725)
|.+++| ++++|++|+.|+.|++||++ ....+..+.+|...|.+++|+|++.+|++++.|+.|++||+++.. ++..+
T Consensus 179 v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~ 255 (401)
T 4aez_A 179 VGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI-PKFTK 255 (401)
T ss_dssp EEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS-EEEEE
T ss_pred eEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC-ccEEe
Confidence 999999 56899999999999999998 567788899999999999999999999999999999999999877 78888
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEe--CCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEE--cCCeEEEEECC
Q 004885 637 TGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--IENYISILDVE 712 (725)
Q Consensus 637 ~~h~~~V~sl~fsP~g~~llaSgs--~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s--~Dg~V~IwDl~ 712 (725)
.+|...|.+++|+|++..++++++ .|+.|++||+++++++..+.+...|.+++|+|++.++++++ .|+.|+|||+.
T Consensus 256 ~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~ 335 (401)
T 4aez_A 256 TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYS 335 (401)
T ss_dssp CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEE
T ss_pred cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecC
Confidence 899999999999999988998876 79999999999999999999888999999999999999965 79999999999
Q ss_pred CCeEEE--EEeCCCC
Q 004885 713 TQVCRL--KLQVSHS 725 (725)
Q Consensus 713 tg~~v~--~l~GH~s 725 (725)
+++... .+.+|.+
T Consensus 336 ~~~~~~~~~~~~h~~ 350 (401)
T 4aez_A 336 SSGLTKQVDIPAHDT 350 (401)
T ss_dssp TTEEEEEEEEECCSS
T ss_pred CccceeEEEecCCCC
Confidence 975554 4668753
No 47
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.94 E-value=6.4e-25 Score=250.00 Aligned_cols=195 Identities=25% Similarity=0.411 Sum_probs=173.6
Q ss_pred CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (725)
Q Consensus 505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl 584 (725)
...++++|+.|+.|++|.. +.+.+..+.+|...|++++|+|++++|++++.|+.|+|||.
T Consensus 355 ~g~~l~~~~~dg~v~~~~~--------------------~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~ 414 (577)
T 2ymu_A 355 DGQTIASASDDKTVKLWNR--------------------NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 414 (577)
T ss_dssp TSSEEEEEETTSEEEEEET--------------------TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred CCCEEEEEeCCCEEEEEcC--------------------CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 3448999999999999942 11345677899999999999999999999999999999995
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc
Q 004885 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (725)
Q Consensus 585 ~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~ 664 (725)
+++.+..+.+|...|++++|+|++.+|++++.|++|++||+.. . .+..+.+|...|.+++|+|++. +|++++.|+.
T Consensus 415 -~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~-~~~~~~~~~~~v~~~~~spd~~-~las~~~d~~ 490 (577)
T 2ymu_A 415 -NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-Q-LLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKT 490 (577)
T ss_dssp -TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-C-EEEEEECCSSCEEEEEECTTSC-EEEEEETTSE
T ss_pred -CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-C-EEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCE
Confidence 5678889999999999999999999999999999999999753 4 6888999999999999999988 7779999999
Q ss_pred EEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885 665 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS 725 (725)
Q Consensus 665 I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s 725 (725)
|+|||. +++++..+.. ...|++|+|+|++.+|++++.|+.|+|||+ +++++.++.||.+
T Consensus 491 i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~ 550 (577)
T 2ymu_A 491 VKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS 550 (577)
T ss_dssp EEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSS
T ss_pred EEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCC
Confidence 999995 5778888875 678999999999999999999999999995 7899999999974
No 48
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.94 E-value=2.5e-25 Score=242.46 Aligned_cols=188 Identities=18% Similarity=0.238 Sum_probs=159.6
Q ss_pred cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEe-----cCCCCCeEEEEEcC-CCCEEEEEeCCCcEE
Q 004885 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-----PASTSKVESCHFSP-DGKLLATGGHDKKAV 580 (725)
Q Consensus 507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~ 580 (725)
..+++|+.|++|++|+...+ ..+..+ .+|...|.+++|++ ++++|++|+.|++|+
T Consensus 171 ~~l~s~s~D~~i~~wd~~~~-------------------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~ 231 (380)
T 3iz6_a 171 TRLITGSGDQTCVLWDVTTG-------------------QRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVR 231 (380)
T ss_dssp SCEEEECTTSCEEEECTTTC-------------------CEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEE
T ss_pred CEEEEECCCCcEEEEEcCCC-------------------cEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEE
Confidence 45778888888888854332 122222 57999999999987 889999999999999
Q ss_pred EEECC-CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCC-------CCeEEEEEccCC
Q 004885 581 LWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-------TTVMSLDFHPSK 652 (725)
Q Consensus 581 IWdl~-~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~-------~~V~sl~fsP~g 652 (725)
+||++ ....+..+.+|...|++++|+|++.+|++|+.|++|++||++++. ++..+..+. ..|++++|+|+|
T Consensus 232 ~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g 310 (380)
T 3iz6_a 232 LWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH-QLQVYNREPDRNDNELPIVTSVAFSISG 310 (380)
T ss_dssp EEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTE-EEEEECCCCSSSCCSSCSCSEEEECSSS
T ss_pred EEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCc-EEEEecccccccccccCceEEEEECCCC
Confidence 99997 457788999999999999999999999999999999999999887 666665443 348999999999
Q ss_pred CeEEEEEeCCCcEEEEECCCCeeEEEEe-----cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 004885 653 EDLLCSCDNNSEIRYWSINNGSCAGVFK-----CQSGATQMRFQPRLGRILAAAIENYISILDVETQV 715 (725)
Q Consensus 653 ~~llaSgs~Dg~I~IwDl~t~~~v~~~~-----~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~ 715 (725)
. ++++|+.||.|+|||+.+++++..+. +...|++++|+|++.+|++++.|++|+||++...+
T Consensus 311 ~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 311 R-LLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp S-EEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred C-EEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 8 67789999999999999999888773 36679999999999999999999999999998653
No 49
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=9.9e-25 Score=232.83 Aligned_cols=207 Identities=15% Similarity=0.206 Sum_probs=178.5
Q ss_pred ccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885 475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 554 (725)
Q Consensus 475 ~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H 554 (725)
...+...+.++.|++++. ++++|+.|+.|++|... ......+..+.+|
T Consensus 7 ~~~h~~~v~~~~~s~~~~---------------~l~~~~~dg~i~iw~~~-----------------~~~~~~~~~~~~h 54 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGK---------------RLATCSSDKTIKIFEVE-----------------GETHKLIDTLTGH 54 (379)
T ss_dssp EEECCCCEEEEEECSSSS---------------EEEEEETTSCEEEEEEE-----------------TTEEEEEEEECCC
T ss_pred ecCCcccEEEEEEcCCCC---------------EEEEEECCCcEEEEecC-----------------CCcceeeeEecCC
Confidence 345667889999999886 89999999999999442 1244667788999
Q ss_pred CCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCe--EEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCC
Q 004885 555 TSKVESCHFSPD--GKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTEN 628 (725)
Q Consensus 555 ~~~V~~i~fSpd--g~~LaSgs~Dg~V~IWdl~~~~--~i~~l~~H~~~V~~IafsPd--~~~Lasgs~DgtIrvWDl~~ 628 (725)
...|++++|+++ +++|++|+.|+.|+|||+.+++ .+..+..|...|++++|+|+ +.+|++++.|+.|++||+++
T Consensus 55 ~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 134 (379)
T 3jrp_A 55 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE 134 (379)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCT
T ss_pred CCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCC
Confidence 999999999987 8999999999999999999886 77888899999999999998 99999999999999999998
Q ss_pred CC-eeeEEEecCCCCeEEEEEcc-------------CCCeEEEEEeCCCcEEEEECCCCe----eEEEEec-CCCeEEEE
Q 004885 629 PD-YSLRTFTGHSTTVMSLDFHP-------------SKEDLLCSCDNNSEIRYWSINNGS----CAGVFKC-QSGATQMR 689 (725)
Q Consensus 629 ~~-~~l~~~~~h~~~V~sl~fsP-------------~g~~llaSgs~Dg~I~IwDl~t~~----~v~~~~~-~~~V~sv~ 689 (725)
.. .....+.+|...|.+++|+| ++. ++++++.|+.|++||++++. ++..+.. ...|++++
T Consensus 135 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~ 213 (379)
T 3jrp_A 135 NGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA 213 (379)
T ss_dssp TSCCCEEEEECCTTCEEEEEECCCC----------CTTC-EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE
T ss_pred CCceeeEEecCCCCceEEEEEcCccccccccccCCCCCC-EEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEE
Confidence 74 23456778999999999999 455 77899999999999998764 3344443 67799999
Q ss_pred EecC---CCEEEEEEcCCeEEEEECCCC
Q 004885 690 FQPR---LGRILAAAIENYISILDVETQ 714 (725)
Q Consensus 690 fspd---g~~Lla~s~Dg~V~IwDl~tg 714 (725)
|+|+ +.+|++++.|+.|+|||++++
T Consensus 214 ~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 214 WSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp ECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred ECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 9999 889999999999999999986
No 50
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.94 E-value=4.3e-24 Score=224.09 Aligned_cols=209 Identities=16% Similarity=0.177 Sum_probs=180.5
Q ss_pred CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (725)
Q Consensus 478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (725)
+...+..+.|++++. ++++|+.|+.|++|..... .......+..|...
T Consensus 96 ~~~~v~~~~~~~~~~---------------~l~~~~~d~~i~~~d~~~~-----------------~~~~~~~~~~~~~~ 143 (337)
T 1gxr_A 96 RDNYIRSCKLLPDGC---------------TLIVGGEASTLSIWDLAAP-----------------TPRIKAELTSSAPA 143 (337)
T ss_dssp TTSBEEEEEECTTSS---------------EEEEEESSSEEEEEECCCC-------------------EEEEEEECSSSC
T ss_pred CCCcEEEEEEcCCCC---------------EEEEEcCCCcEEEEECCCC-----------------CcceeeecccCCCc
Confidence 445567777777654 8999999999999955332 12345667889999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEe
Q 004885 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~ 637 (725)
|.+++|+|++++|++++.|+.|++||+++++.+..+..|...|.+++|+|++.+|++++.|+.|++||++++. .+..+
T Consensus 144 i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~- 221 (337)
T 1gxr_A 144 CYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR-QLQQH- 221 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEEE-
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCc-eEeee-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876 45554
Q ss_pred cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEE
Q 004885 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR 717 (725)
Q Consensus 638 ~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v 717 (725)
.+...+.+++|+|++. ++++++.|+.|++||+++++......+...|.+++|+|++.+|++++.|+.|++||+++++.+
T Consensus 222 ~~~~~v~~~~~s~~~~-~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 222 DFTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp ECSSCEEEEEECTTSS-EEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred cCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence 4778899999999988 666888899999999999887665556788999999999999999999999999999999887
Q ss_pred EEEe
Q 004885 718 LKLQ 721 (725)
Q Consensus 718 ~~l~ 721 (725)
..+.
T Consensus 301 ~~~~ 304 (337)
T 1gxr_A 301 FQSK 304 (337)
T ss_dssp EEEE
T ss_pred EEec
Confidence 6543
No 51
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.4e-25 Score=243.76 Aligned_cols=218 Identities=12% Similarity=0.246 Sum_probs=186.5
Q ss_pred CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (725)
Q Consensus 477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~ 556 (725)
.+...+.++.|++++. ++++|+.|+.|++|...... .....+..+.+|..
T Consensus 65 ~~~~~v~~~~~s~~~~---------------~l~~~~~dg~v~vw~~~~~~---------------~~~~~~~~~~~h~~ 114 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNK---------------IIAGALDNGSLELYSTNEAN---------------NAINSMARFSNHSS 114 (416)
T ss_dssp CCSSCEEEEEECSSSS---------------CEEEEESSSCEEEECCSSTT---------------SCCCEEEECCCSSS
T ss_pred ecCCceEEEEECCCCC---------------eEEEEccCCeEEEeeccccc---------------ccccchhhccCCcc
Confidence 3455788899988776 88999999999999554321 01235677889999
Q ss_pred CeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCe------EEE---EeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEE
Q 004885 557 KVESCHFSPD-GKLLATGGHDKKAVLWCTESFT------VKS---TLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWD 625 (725)
Q Consensus 557 ~V~~i~fSpd-g~~LaSgs~Dg~V~IWdl~~~~------~i~---~l~~H~~~V~~IafsPd-~~~Lasgs~DgtIrvWD 625 (725)
.|++++|+|+ +++|++++.|+.|++||+.+.+ ... .+..|...|++++|+|+ +.+|++++.|+.|++||
T Consensus 115 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd 194 (416)
T 2pm9_A 115 SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWD 194 (416)
T ss_dssp CCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEE
T ss_pred ceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEE
Confidence 9999999998 8999999999999999998876 322 34679999999999998 78999999999999999
Q ss_pred CCCCCeeeEEEecC------CCCeEEEEEccCCCeEEEEEeCCC---cEEEEECCCC-eeEEEEe--cCCCeEEEEEec-
Q 004885 626 TENPDYSLRTFTGH------STTVMSLDFHPSKEDLLCSCDNNS---EIRYWSINNG-SCAGVFK--CQSGATQMRFQP- 692 (725)
Q Consensus 626 l~~~~~~l~~~~~h------~~~V~sl~fsP~g~~llaSgs~Dg---~I~IwDl~t~-~~v~~~~--~~~~V~sv~fsp- 692 (725)
++++. ++..+..| ...|.+++|+|++..++++++.|+ .|++||++++ .++..+. +...|++++|+|
T Consensus 195 ~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~ 273 (416)
T 2pm9_A 195 LKAKK-EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQ 273 (416)
T ss_dssp TTTTE-EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSS
T ss_pred CCCCC-cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCC
Confidence 99877 67777766 788999999999877888999998 9999999986 6667776 467899999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885 693 RLGRILAAAIENYISILDVETQVCRLKLQVSHS 725 (725)
Q Consensus 693 dg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s 725 (725)
++.+|++++.|+.|+|||+++++++..+.+|.+
T Consensus 274 ~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~ 306 (416)
T 2pm9_A 274 DEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN 306 (416)
T ss_dssp CSSCEEEEESSSEEEEECSSSCCEEEEEECSSS
T ss_pred CCCeEEEEeCCCCEEEeeCCCCccceeecCCCC
Confidence 889999999999999999999999999999863
No 52
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.94 E-value=4.7e-25 Score=241.00 Aligned_cols=219 Identities=16% Similarity=0.192 Sum_probs=180.9
Q ss_pred cCCCCCeeEEEEec-CCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885 476 HNGASSKSLLMFGS-DGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 554 (725)
Q Consensus 476 ~s~s~~~s~l~fs~-dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H 554 (725)
..+...+.++.|+| ++. ++++|+.|+.|++|......... .....+..+.+|
T Consensus 78 ~~h~~~V~~~~~~p~~~~---------------~l~s~s~dg~v~vw~~~~~~~~~------------~~~~~~~~~~~h 130 (402)
T 2aq5_A 78 CGHTAPVLDIAWCPHNDN---------------VIASGSEDCTVMVWEIPDGGLVL------------PLREPVITLEGH 130 (402)
T ss_dssp CCCSSCEEEEEECTTCTT---------------EEEEEETTSEEEEEECCTTCCSS------------CBCSCSEEEECC
T ss_pred ecCCCCEEEEEeCCCCCC---------------EEEEEeCCCeEEEEEccCCCCcc------------ccCCceEEecCC
Confidence 34566778888888 554 89999999999999765542111 111345677899
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEe--ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 004885 555 TSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (725)
Q Consensus 555 ~~~V~~i~fSpdg-~~LaSgs~Dg~V~IWdl~~~~~i~~l--~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~ 631 (725)
...|.+++|+|++ ++|++|+.|++|+|||+++++.+..+ .+|...|++++|+|++.+|++++.|+.|++||++++.
T Consensus 131 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~- 209 (402)
T 2aq5_A 131 TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT- 209 (402)
T ss_dssp SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-
T ss_pred CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc-
Confidence 9999999999998 69999999999999999999999999 8899999999999999999999999999999999887
Q ss_pred eeEEE-ecCCCC-eEEEEEccCCCeEEEEE---eCCCcEEEEECCCCee-E--EEEecCCCeEEEEEecCCCEEEEEE-c
Q 004885 632 SLRTF-TGHSTT-VMSLDFHPSKEDLLCSC---DNNSEIRYWSINNGSC-A--GVFKCQSGATQMRFQPRLGRILAAA-I 702 (725)
Q Consensus 632 ~l~~~-~~h~~~-V~sl~fsP~g~~llaSg---s~Dg~I~IwDl~t~~~-v--~~~~~~~~V~sv~fspdg~~Lla~s-~ 702 (725)
.+..+ .+|.+. +.++.|+|++. +++++ +.|+.|++||++++.. + ..+.+...+.+++|+|++.+|++++ .
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~ 288 (402)
T 2aq5_A 210 VVAEKDRPHEGTRPVHAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKG 288 (402)
T ss_dssp EEEEEECSSCSSSCCEEEECSTTE-EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETT
T ss_pred eeeeeccCCCCCcceEEEEcCCCc-EEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcC
Confidence 67777 688776 89999999976 67777 6899999999998654 3 3333467899999999999997666 5
Q ss_pred CCeEEEEECCCCeE-EEEEeCC
Q 004885 703 ENYISILDVETQVC-RLKLQVS 723 (725)
Q Consensus 703 Dg~V~IwDl~tg~~-v~~l~GH 723 (725)
|+.|+|||+++++. +..+.+|
T Consensus 289 dg~i~i~d~~~~~~~~~~l~~~ 310 (402)
T 2aq5_A 289 DSSIRYFEITSEAPFLHYLSMF 310 (402)
T ss_dssp CSCEEEEEECSSTTCEEEEEEE
T ss_pred CCeEEEEEecCCCcceEeeccc
Confidence 99999999999873 5555544
No 53
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.6e-24 Score=234.57 Aligned_cols=208 Identities=19% Similarity=0.283 Sum_probs=184.0
Q ss_pred CCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCe
Q 004885 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV 558 (725)
Q Consensus 479 s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V 558 (725)
...+.++.|++++. ++++|+.|+.|++|. .....+..+.+|...|
T Consensus 108 ~~~v~~~~~s~~~~---------------~l~~~~~dg~i~i~~--------------------~~~~~~~~~~~~~~~v 152 (425)
T 1r5m_A 108 TNQVTCLAWSHDGN---------------SIVTGVENGELRLWN--------------------KTGALLNVLNFHRAPI 152 (425)
T ss_dssp CBCEEEEEECTTSS---------------EEEEEETTSCEEEEE--------------------TTSCEEEEECCCCSCE
T ss_pred CCceEEEEEcCCCC---------------EEEEEeCCCeEEEEe--------------------CCCCeeeeccCCCccE
Confidence 44778888888776 899999999999994 1123556778999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-----------------------------------------------
Q 004885 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS----------------------------------------------- 591 (725)
Q Consensus 559 ~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~----------------------------------------------- 591 (725)
.+++|+|++++|++++.|+.|++||+.+++.+.
T Consensus 153 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ 232 (425)
T 1r5m_A 153 VSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVY 232 (425)
T ss_dssp EEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEE
T ss_pred EEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEE
Confidence 999999999999999999999999997765443
Q ss_pred ---------EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC
Q 004885 592 ---------TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (725)
Q Consensus 592 ---------~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D 662 (725)
.+..|...|++++|+|++.+|++++.|+.|++||+++.. ++..+.+|...|.+++|+|++ ++++++.|
T Consensus 233 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d 309 (425)
T 1r5m_A 233 QITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN-SQNCFYGHSQSIVSASWVGDD--KVISCSMD 309 (425)
T ss_dssp ETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBS-CSEEECCCSSCEEEEEEETTT--EEEEEETT
T ss_pred EcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc-cceEecCCCccEEEEEECCCC--EEEEEeCC
Confidence 334678889999999999999999999999999999877 788888999999999999998 67789999
Q ss_pred CcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe--------------------EEEEEe
Q 004885 663 SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQV--------------------CRLKLQ 721 (725)
Q Consensus 663 g~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~--------------------~v~~l~ 721 (725)
+.|++||+++++++..+.. ...|.+++|+|++.+|++++.|+.|+|||+++++ ++..+.
T Consensus 310 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (425)
T 1r5m_A 310 GSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ 389 (425)
T ss_dssp SEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEEC
T ss_pred CcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhc
Confidence 9999999999999988886 6789999999999999999999999999999988 999999
Q ss_pred CCC
Q 004885 722 VSH 724 (725)
Q Consensus 722 GH~ 724 (725)
+|.
T Consensus 390 ~~~ 392 (425)
T 1r5m_A 390 SSQ 392 (425)
T ss_dssp CTT
T ss_pred Ccc
Confidence 984
No 54
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.94 E-value=2.6e-24 Score=228.29 Aligned_cols=221 Identities=19% Similarity=0.252 Sum_probs=178.0
Q ss_pred cccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecC
Q 004885 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (725)
Q Consensus 474 l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 553 (725)
....+...+.++.|+|+.. ...++++|+.|+.|++|..... .......+.+
T Consensus 34 ~~~~h~~~v~~~~~~~~~~------------~g~~l~~~~~dg~i~iw~~~~~-----------------~~~~~~~~~~ 84 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTL------------PGNFLIAGSWANDVRCWEVQDS-----------------GQTIPKAQQM 84 (368)
T ss_dssp CSSCCSSCEEEEEECCTTS------------SSEEEEEEETTSEEEEEEECTT-----------------SCEEEEEEEE
T ss_pred eccCCCCceEEEEEcCCCC------------CceEEEEECCCCcEEEEEcCCC-----------------CceeEEEecc
Confidence 4556778899999999741 0138999999999999955431 1123366778
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEE--cCCCCEEEEEeCCCeEEEEECCCCCe
Q 004885 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF--SPSLSRLATSSADRTVRVWDTENPDY 631 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~Iaf--sPd~~~Lasgs~DgtIrvWDl~~~~~ 631 (725)
|...|++++|+|++++|++++.|+.|+|||+++++.+. +..|...|++++| +|++.+|++++.|+.|++||++++.
T Consensus 85 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~- 162 (368)
T 3mmy_A 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN- 162 (368)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS-
T ss_pred ccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc-
Confidence 99999999999999999999999999999999988776 5679999999999 8899999999999999999999876
Q ss_pred eeEEEecCC-----------------------------------------CCeEEEEEccCCC---eEEEEEeCCCcEEE
Q 004885 632 SLRTFTGHS-----------------------------------------TTVMSLDFHPSKE---DLLCSCDNNSEIRY 667 (725)
Q Consensus 632 ~l~~~~~h~-----------------------------------------~~V~sl~fsP~g~---~llaSgs~Dg~I~I 667 (725)
++..+..+. ..+.++++.++.. ..+++++.|+.|++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i 242 (368)
T 3mmy_A 163 PMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAI 242 (368)
T ss_dssp CSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEE
T ss_pred EEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEE
Confidence 455444332 2234444444332 23778999999999
Q ss_pred EECCCC---eeEEEEecCC-------------CeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885 668 WSINNG---SCAGVFKCQS-------------GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS 725 (725)
Q Consensus 668 wDl~t~---~~v~~~~~~~-------------~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s 725 (725)
||++.. ..+..+..+. .|++++|+|++.+|++++.|+.|+|||+++++++..+.+|.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 316 (368)
T 3mmy_A 243 HYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQ 316 (368)
T ss_dssp EESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS
T ss_pred EecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCC
Confidence 999987 4566666533 699999999999999999999999999999999999999863
No 55
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.93 E-value=1.1e-24 Score=247.95 Aligned_cols=181 Identities=25% Similarity=0.433 Sum_probs=161.4
Q ss_pred CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (725)
Q Consensus 505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl 584 (725)
..+++++|+.|+.|++|.. ..+.+..+.+|...|++++|+||+++|++++.|++|++||.
T Consensus 396 dg~~l~~~~~d~~v~~~~~--------------------~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~ 455 (577)
T 2ymu_A 396 DGQTIASASDDKTVKLWNR--------------------NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR 455 (577)
T ss_dssp TSSCEEEEETTSEEEEECT--------------------TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CCCEEEEEeCCCEEEEEeC--------------------CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 3348999999999999932 11345677899999999999999999999999999999996
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc
Q 004885 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (725)
Q Consensus 585 ~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~ 664 (725)
+++.+..+.+|...|++++|+|++++|++++.|++|++||.. +. ++..+.+|...|++|+|+|+++ +|++++.|+.
T Consensus 456 -~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~-~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~dg~ 531 (577)
T 2ymu_A 456 -NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ-LLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKT 531 (577)
T ss_dssp -TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-SC-EEEEEECCSSCEEEEEECTTSS-CEEEEETTSE
T ss_pred -CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-CC-EEEEEeCCCCCEEEEEEcCCCC-EEEEEECcCE
Confidence 567788899999999999999999999999999999999964 44 7889999999999999999998 6678999999
Q ss_pred EEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004885 665 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILD 710 (725)
Q Consensus 665 I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwD 710 (725)
|+|||. +++++..+.. ...|++++|+||+++|++++.|++|+|||
T Consensus 532 v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 532 VKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999996 5788888775 67899999999999999999999999997
No 56
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.93 E-value=1.3e-24 Score=257.89 Aligned_cols=216 Identities=20% Similarity=0.288 Sum_probs=194.0
Q ss_pred cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST 555 (725)
Q Consensus 476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~ 555 (725)
..++..+.++.|+|++. ++++|+.|+.|++|+... ...+..+.+|.
T Consensus 10 ~~h~~~v~~i~~sp~~~---------------~la~~~~~g~v~iwd~~~-------------------~~~~~~~~~~~ 55 (814)
T 3mkq_A 10 SNRSDRVKGIDFHPTEP---------------WVLTTLYSGRVEIWNYET-------------------QVEVRSIQVTE 55 (814)
T ss_dssp EEECSCEEEEEECSSSS---------------EEEEEETTSEEEEEETTT-------------------TEEEEEEECCS
T ss_pred ecCCCceEEEEECCCCC---------------EEEEEeCCCEEEEEECCC-------------------CceEEEEecCC
Confidence 34566789999999887 899999999999995422 24567788999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEE
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~ 635 (725)
+.|++++|+|++++|++|+.|+.|+|||+.+++.+..+.+|...|++++|+|++.+|++++.|++|++||+.++......
T Consensus 56 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 135 (814)
T 3mkq_A 56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT 135 (814)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE
T ss_pred CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988657888
Q ss_pred EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeEEEEEec--CCCEEEEEEcCCeEEEEEC
Q 004885 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQP--RLGRILAAAIENYISILDV 711 (725)
Q Consensus 636 ~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fsp--dg~~Lla~s~Dg~V~IwDl 711 (725)
+.+|...|.+++|+|+...++++++.||.|++||++++.....+.. ...+.+++|+| ++.+|++++.|+.|++||+
T Consensus 136 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~ 215 (814)
T 3mkq_A 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY 215 (814)
T ss_dssp EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEET
T ss_pred EcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 9999999999999994344788999999999999998888777765 37899999999 8999999999999999999
Q ss_pred CCCeEEEEEeCCCC
Q 004885 712 ETQVCRLKLQVSHS 725 (725)
Q Consensus 712 ~tg~~v~~l~GH~s 725 (725)
++++++..+.+|.+
T Consensus 216 ~~~~~~~~~~~~~~ 229 (814)
T 3mkq_A 216 QTKSCVATLEGHMS 229 (814)
T ss_dssp TTTEEEEEEECCSS
T ss_pred CCCcEEEEEcCCCC
Confidence 99999999999863
No 57
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.93 E-value=2.1e-25 Score=243.39 Aligned_cols=202 Identities=17% Similarity=0.232 Sum_probs=170.5
Q ss_pred EEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEE
Q 004885 484 LLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHF 563 (725)
Q Consensus 484 ~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~f 563 (725)
.+.|+|++. ++++|+.|+.|++|...... ....+..| ..+.+..|
T Consensus 61 ~~~~s~~g~---------------~l~~~~~d~~v~i~d~~~~~-------------------~~~~~~~~-~~~~~~~~ 105 (420)
T 3vl1_A 61 GNTFEKVGS---------------HLYKARLDGHDFLFNTIIRD-------------------GSKMLKRA-DYTAVDTA 105 (420)
T ss_dssp TCEEEEEET---------------TEEEEEETTEEEEEECCSEE-------------------TTTTSCSC-CEEEEEEE
T ss_pred ceeeeecCC---------------eEEEEEcCCcEEEEEecccc-------------------eeeEEecC-CceEEEEE
Confidence 456777665 78999999999999543321 11122233 33556678
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCe
Q 004885 564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV 643 (725)
Q Consensus 564 Spdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V 643 (725)
++++++|++|+.|+.|+|||+.+++.+..+.+|...|++++|+|++++|++++.|++|++||++++. ++..+.+|...|
T Consensus 106 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~h~~~v 184 (420)
T 3vl1_A 106 KLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS-NPRTLIGHRATV 184 (420)
T ss_dssp CSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-CCEEEECCSSCE
T ss_pred ecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-CceEEcCCCCcE
Confidence 9999999999999999999999999998889999999999999999999999999999999999887 788899999999
Q ss_pred EEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec----CCCeEE---------------------EEEecCCCEEE
Q 004885 644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGATQ---------------------MRFQPRLGRIL 698 (725)
Q Consensus 644 ~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~----~~~V~s---------------------v~fspdg~~Ll 698 (725)
.+++|+|++. +|++++.|+.|++||+++++++..+.. ...|.+ ++|+|++.+|+
T Consensus 185 ~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 263 (420)
T 3vl1_A 185 TDIAIIDRGR-NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVI 263 (420)
T ss_dssp EEEEEETTTT-EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEE
T ss_pred EEEEEcCCCC-EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEE
Confidence 9999999988 667999999999999999999988863 233444 45578888999
Q ss_pred EEEcCCeEEEEECCCCeEEEEEeC
Q 004885 699 AAAIENYISILDVETQVCRLKLQV 722 (725)
Q Consensus 699 a~s~Dg~V~IwDl~tg~~v~~l~G 722 (725)
+++.|+.|+|||+++++.+..+..
T Consensus 264 ~~~~dg~i~i~d~~~~~~~~~~~~ 287 (420)
T 3vl1_A 264 AGHVSGVITVHNVFSKEQTIQLPS 287 (420)
T ss_dssp EEETTSCEEEEETTTCCEEEEECC
T ss_pred EEcCCCeEEEEECCCCceeEEccc
Confidence 999999999999999988887764
No 58
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.93 E-value=6.4e-25 Score=241.78 Aligned_cols=218 Identities=12% Similarity=0.142 Sum_probs=178.0
Q ss_pred cCCCCCeeEEEEec-CCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885 476 HNGASSKSLLMFGS-DGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 554 (725)
Q Consensus 476 ~s~s~~~s~l~fs~-dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H 554 (725)
..+...+.++.|++ ++. ++++|+.|+.|++|...... .+..+.....+ +|
T Consensus 60 ~~h~~~V~~~~~s~~~~~---------------~l~s~s~dg~v~vwd~~~~~-------------~~~~~~~~~~~-~h 110 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETP---------------YLITGSDQGVIKIWNLKEII-------------VGEVYSSSLTY-DC 110 (437)
T ss_dssp TTTTSCEEEEEEECSSSC---------------EEEEEETTSEEEEEEHHHHH-------------TTCCCSCSEEE-EC
T ss_pred cCCCCceEEEEECCCCCC---------------EEEEecCCceEEEeECcccc-------------cCcccceeeec-cC
Confidence 44567899999999 776 99999999999999543210 01111222222 48
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECC---CCeEEEEecc------------CCCCeEEEE--EcCCCCEEEEEeC
Q 004885 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE---SFTVKSTLEE------------HTQWITDVR--FSPSLSRLATSSA 617 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~---~~~~i~~l~~------------H~~~V~~Ia--fsPd~~~Lasgs~ 617 (725)
...|++++|+|++++|++|+.|++|+|||++ +++.+..+.. +...+.++. +++++.+|++++.
T Consensus 111 ~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 190 (437)
T 3gre_A 111 SSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTN 190 (437)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEET
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeC
Confidence 9999999999999999999999999999994 4544443322 456677777 5678999999999
Q ss_pred CCeEEEEECCCCCeeeEEEec--CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe--cCCCeEEEEEec-
Q 004885 618 DRTVRVWDTENPDYSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQP- 692 (725)
Q Consensus 618 DgtIrvWDl~~~~~~l~~~~~--h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~--~~~~V~sv~fsp- 692 (725)
|++|++||+++.. ++..+.+ |...|++++|+|++. +|++++.||.|++||++++.++..+. +...|++++|+|
T Consensus 191 d~~i~iwd~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 268 (437)
T 3gre_A 191 LSRVIIFDIRTLE-RLQIIENSPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQF 268 (437)
T ss_dssp TSEEEEEETTTCC-EEEEEECCGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTT
T ss_pred CCeEEEEeCCCCe-eeEEEccCCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccc
Confidence 9999999999988 7888887 889999999999977 77799999999999999999999885 356799997665
Q ss_pred ---CCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885 693 ---RLGRILAAAIENYISILDVETQVCRLKLQVSH 724 (725)
Q Consensus 693 ---dg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~ 724 (725)
++.+|++++.|+.|+|||+++++++..+.+|.
T Consensus 269 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 303 (437)
T 3gre_A 269 YGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSD 303 (437)
T ss_dssp TCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSS
T ss_pred cCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCC
Confidence 56688899999999999999999999999885
No 59
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.93 E-value=1.2e-24 Score=235.18 Aligned_cols=216 Identities=15% Similarity=0.140 Sum_probs=179.0
Q ss_pred CCCCCeeEEEEecC----CCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEec
Q 004885 477 NGASSKSLLMFGSD----GMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP 552 (725)
Q Consensus 477 s~s~~~s~l~fs~d----g~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 552 (725)
.+...+.++.|+++ +. ...++++++.|+.|++|....... .....+..+.
T Consensus 60 ~h~~~v~~~~~~~~~~~~g~------------~~~~l~s~~~dg~i~iw~~~~~~~--------------~~~~~~~~~~ 113 (397)
T 1sq9_A 60 VHKSGLHHVDVLQAIERDAF------------ELCLVATTSFSGDLLFYRITREDE--------------TKKVIFEKLD 113 (397)
T ss_dssp CCTTCEEEEEEEEEEETTTE------------EEEEEEEEETTSCEEEEEEEECTT--------------TCCEEEEEEC
T ss_pred cCCCcEEEEEEecccccCCc------------cccEEEEEcCCCCEEEEEccCCcc--------------cccccceeec
Confidence 45556788888876 40 003899999999999995433310 1112256677
Q ss_pred CC-----CCCeEEEEEc----CCCCE-EEEEeCCCcEEEEECCC------CeEEE-----Ee-------ccCCCCeEEEE
Q 004885 553 AS-----TSKVESCHFS----PDGKL-LATGGHDKKAVLWCTES------FTVKS-----TL-------EEHTQWITDVR 604 (725)
Q Consensus 553 ~H-----~~~V~~i~fS----pdg~~-LaSgs~Dg~V~IWdl~~------~~~i~-----~l-------~~H~~~V~~Ia 604 (725)
.| ...|.+++|+ |++++ |++++.|+.|++||+.+ ++.+. .+ ..|...|++++
T Consensus 114 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 193 (397)
T 1sq9_A 114 LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVD 193 (397)
T ss_dssp CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEE
T ss_pred ccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEE
Confidence 78 5899999999 99999 99999999999999987 55555 66 45899999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEec---C---CCCeEEEEEccCCCeEEEEEeCC---CcEEEEECCCCee
Q 004885 605 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG---H---STTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGSC 675 (725)
Q Consensus 605 fsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~---h---~~~V~sl~fsP~g~~llaSgs~D---g~I~IwDl~t~~~ 675 (725)
|+|++ +|++++.|+.|++||+++.. ++..+.. | ...|.+++|+|++. +|++++.| +.|++||++++++
T Consensus 194 ~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~h~~~~~~i~~i~~~~~~~-~l~~~~~d~~~g~i~i~d~~~~~~ 270 (397)
T 1sq9_A 194 ISERG-LIATGFNNGTVQISELSTLR-PLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGER 270 (397)
T ss_dssp ECTTS-EEEEECTTSEEEEEETTTTE-EEEEEECCC---CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTTCCE
T ss_pred ECCCc-eEEEEeCCCcEEEEECCCCc-eeEEEeccccccccCCccceEEECCCCC-EEEEEecCCCCceEEEEECCCCcc
Confidence 99999 99999999999999999876 7888888 8 99999999999988 66688888 9999999999999
Q ss_pred EEEEe--------------cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 676 AGVFK--------------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 676 v~~~~--------------~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
+..+. +...|.+++|+|++.+|++++.|+.|+|||+++++++..+.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 271 IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred cceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 98887 46779999999999999999999999999999999999999
No 60
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.93 E-value=9.8e-25 Score=235.86 Aligned_cols=215 Identities=13% Similarity=0.068 Sum_probs=184.0
Q ss_pred ccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885 475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 554 (725)
Q Consensus 475 ~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H 554 (725)
...+...+.++.|++ . ++++|+.|+.|++|....... ...+..+..+.+|
T Consensus 12 ~~~h~~~i~~~~~~~--~---------------~l~s~~~dg~i~iw~~~~~~~-------------~~~~~~~~~~~~h 61 (397)
T 1sq9_A 12 GKAHDADIFSVSACN--S---------------FTVSCSGDGYLKVWDNKLLDN-------------ENPKDKSYSHFVH 61 (397)
T ss_dssp SSCSSSCEEEEEECS--S---------------EEEEEETTSEEEEEESBCCTT-------------CCGGGGEEEEECC
T ss_pred hhhhhcCeEEEEecC--C---------------eEEEEcCCCEEEEEECCCccc-------------ccCCCcceEEecC
Confidence 345667888888876 2 899999999999996644321 1123456677899
Q ss_pred CCCeEEEEEcCC----C---CEEEEEeCCCcEEEEECCCCeE-----EEEeccC-----CCCeEEEEEc----CCCCE-E
Q 004885 555 TSKVESCHFSPD----G---KLLATGGHDKKAVLWCTESFTV-----KSTLEEH-----TQWITDVRFS----PSLSR-L 612 (725)
Q Consensus 555 ~~~V~~i~fSpd----g---~~LaSgs~Dg~V~IWdl~~~~~-----i~~l~~H-----~~~V~~Iafs----Pd~~~-L 612 (725)
...|++++|+|+ + ++|++++.|+.|++||+.+++. +..+..| ...|.+++|+ |++.+ |
T Consensus 62 ~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l 141 (397)
T 1sq9_A 62 KSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRL 141 (397)
T ss_dssp TTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEE
T ss_pred CCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEE
Confidence 999999999999 9 9999999999999999988776 8888888 5899999999 99999 9
Q ss_pred EEEeCCCeEEEEECCC------CCeeeE-----EE-------ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe
Q 004885 613 ATSSADRTVRVWDTEN------PDYSLR-----TF-------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674 (725)
Q Consensus 613 asgs~DgtIrvWDl~~------~~~~l~-----~~-------~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~ 674 (725)
++++.|+.|++||+++ .. .+. .+ ..|...|.+++|+|++ ++++++.|+.|++||+++++
T Consensus 142 ~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~ 218 (397)
T 1sq9_A 142 VATDVKGTTYIWKFHPFADESNSL-TLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLR 218 (397)
T ss_dssp EEEETTSCEEEEEEESSSSHHHHT-TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTE
T ss_pred EEEeCCCcEEEEeCCccccccccc-eeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCc
Confidence 9999999999999998 54 344 66 4488999999999998 77799999999999999999
Q ss_pred eEEEEec-------CCCeEEEEEecCCCEEEEEEcC---CeEEEEECCCCeEEEEEeC
Q 004885 675 CAGVFKC-------QSGATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQV 722 (725)
Q Consensus 675 ~v~~~~~-------~~~V~sv~fspdg~~Lla~s~D---g~V~IwDl~tg~~v~~l~G 722 (725)
++..+.. ...|.+++|+|++.+|++++.| +.|++||+++++++..+.+
T Consensus 219 ~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~ 276 (397)
T 1sq9_A 219 PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSV 276 (397)
T ss_dssp EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECB
T ss_pred eeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceecc
Confidence 9999886 7789999999999999999999 9999999999999999998
No 61
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.93 E-value=8.5e-25 Score=232.22 Aligned_cols=212 Identities=14% Similarity=0.174 Sum_probs=178.0
Q ss_pred CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (725)
Q Consensus 478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (725)
+...+.++.|++++. ....++++|+.|+.|++|.... .+.+..+.+|...
T Consensus 68 ~~~~v~~~~~~~~~~-----------~~~~~l~~~~~dg~i~v~d~~~-------------------~~~~~~~~~~~~~ 117 (366)
T 3k26_A 68 ADENFYTCAWTYDSN-----------TSHPLLAVAGSRGIIRIINPIT-------------------MQCIKHYVGHGNA 117 (366)
T ss_dssp TTCCEEEEEEEECTT-----------TCCEEEEEEETTCEEEEECTTT-------------------CCEEEEEESCCSC
T ss_pred CCCcEEEEEeccCCC-----------CCCCEEEEecCCCEEEEEEchh-------------------ceEeeeecCCCCc
Confidence 345677888888643 1235899999999999994322 2456677899999
Q ss_pred eEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEe---ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004885 558 VESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTL---EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (725)
Q Consensus 558 V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~~~i~~l---~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l 633 (725)
|++++|+| ++++|++|+.|+.|+|||+++++.+..+ .+|...|++++|+|++.+|++++.|+.|++||++++. .+
T Consensus 118 i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~ 196 (366)
T 3k26_A 118 INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKR-MM 196 (366)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHH-HH
T ss_pred EEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCc-cc
Confidence 99999999 9999999999999999999999999888 7899999999999999999999999999999998754 22
Q ss_pred ----------------------------EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee----------
Q 004885 634 ----------------------------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---------- 675 (725)
Q Consensus 634 ----------------------------~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~---------- 675 (725)
....+|...|.+++|+ +. ++++++.|+.|++||++++..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 273 (366)
T 3k26_A 197 NAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD-LILSKSCENAIVCWKPGKMEDDIDKIKPSES 273 (366)
T ss_dssp HHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT-EEEEECSSSEEEEEEESSTTCCGGGCCTTCC
T ss_pred cccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC-EEEEEecCCEEEEEeCCCccccccccccCCc
Confidence 2233489999999999 44 788999999999999987643
Q ss_pred ----EEEEec-CCCeEEEEEecC--CCEEEEEEcCCeEEEEECCCCe----EEEEEeCC
Q 004885 676 ----AGVFKC-QSGATQMRFQPR--LGRILAAAIENYISILDVETQV----CRLKLQVS 723 (725)
Q Consensus 676 ----v~~~~~-~~~V~sv~fspd--g~~Lla~s~Dg~V~IwDl~tg~----~v~~l~GH 723 (725)
+..+.. ...|++++|+|+ +.+|++++.|+.|+|||+++++ .+..+.+|
T Consensus 274 ~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 332 (366)
T 3k26_A 274 NVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHH 332 (366)
T ss_dssp CEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCT
T ss_pred chheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEccc
Confidence 555554 667999999999 9999999999999999999974 56688887
No 62
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.93 E-value=5.6e-25 Score=233.63 Aligned_cols=201 Identities=18% Similarity=0.326 Sum_probs=162.8
Q ss_pred CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEE
Q 004885 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKKAVLWC 583 (725)
Q Consensus 506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpd--g~~LaSgs~Dg~V~IWd 583 (725)
..+|++|+.|++|++|+...+ .+..+..+.+|...|.+++|+|+ +.+|++|+.|++|++||
T Consensus 71 ~~~l~s~s~D~~v~iWd~~~~-----------------~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd 133 (316)
T 3bg1_A 71 GNILASCSYDRKVIIWREENG-----------------TWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLT 133 (316)
T ss_dssp SSCEEEEETTSCEEEECCSSS-----------------CCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEE
T ss_pred CCEEEEEECCCEEEEEECCCC-----------------cceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEe
Confidence 358999999999999954321 12345567899999999999997 78999999999999999
Q ss_pred CCCCe---EEEEeccCCCCeEEEEEcCC-----------------CCEEEEEeCCCeEEEEECCCCC--eeeEEEecCCC
Q 004885 584 TESFT---VKSTLEEHTQWITDVRFSPS-----------------LSRLATSSADRTVRVWDTENPD--YSLRTFTGHST 641 (725)
Q Consensus 584 l~~~~---~i~~l~~H~~~V~~IafsPd-----------------~~~Lasgs~DgtIrvWDl~~~~--~~l~~~~~h~~ 641 (725)
++... ....+.+|...|.+++|+|+ +.+|++|+.|++|++||++... .++..+.+|..
T Consensus 134 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~ 213 (316)
T 3bg1_A 134 YTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD 213 (316)
T ss_dssp ECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSS
T ss_pred cCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCC
Confidence 98753 23456789999999999997 3689999999999999997553 25677889999
Q ss_pred CeEEEEEccCC---CeEEEEEeCCCcEEEEECCCC---e-eEEEE-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004885 642 TVMSLDFHPSK---EDLLCSCDNNSEIRYWSINNG---S-CAGVF-KCQSGATQMRFQPRLGRILAAAIENYISILDVET 713 (725)
Q Consensus 642 ~V~sl~fsP~g---~~llaSgs~Dg~I~IwDl~t~---~-~v~~~-~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~t 713 (725)
.|.+++|+|++ ..+|++++.|++|+|||+++. . ....+ .+...|.+++|+|++.+|++++.|++|+||+...
T Consensus 214 ~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 214 WVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred ceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 99999999986 248889999999999999862 1 11222 3467899999999999999999999999999863
Q ss_pred -C--eEEEEEeCC
Q 004885 714 -Q--VCRLKLQVS 723 (725)
Q Consensus 714 -g--~~v~~l~GH 723 (725)
+ .++..+...
T Consensus 294 ~g~~~~~~~~~~~ 306 (316)
T 3bg1_A 294 DGQWVCISDVNKG 306 (316)
T ss_dssp TSCEEEEEECC--
T ss_pred CCcEEEeeeccCC
Confidence 3 677766543
No 63
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.93 E-value=1.1e-23 Score=233.58 Aligned_cols=195 Identities=16% Similarity=0.288 Sum_probs=174.1
Q ss_pred EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004885 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 587 (725)
Q Consensus 508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~ 587 (725)
++++|+.|+.|++|+... .+.+..+.+|.+.|++++|++++ +|++|+.|++|++||++++
T Consensus 134 ~l~sgs~dg~i~vwd~~~-------------------~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~ 193 (464)
T 3v7d_B 134 YVITGADDKMIRVYDSIN-------------------KKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG 193 (464)
T ss_dssp EEEEEETTSCEEEEETTT-------------------TEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTT
T ss_pred EEEEEcCCCcEEEEECCC-------------------CcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC
Confidence 899999999999995422 25677788999999999999988 9999999999999999999
Q ss_pred eEEEEeccCCCCeEEEEEc--CCCCEEEEEeCCCeEEEEECCCCCe----------------------eeEEEecCCCCe
Q 004885 588 TVKSTLEEHTQWITDVRFS--PSLSRLATSSADRTVRVWDTENPDY----------------------SLRTFTGHSTTV 643 (725)
Q Consensus 588 ~~i~~l~~H~~~V~~Iafs--Pd~~~Lasgs~DgtIrvWDl~~~~~----------------------~l~~~~~h~~~V 643 (725)
+.+..+.+|...|.+++|+ +++.+|++++.|++|++||+++... .+..+.+|...|
T Consensus 194 ~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 273 (464)
T 3v7d_B 194 CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV 273 (464)
T ss_dssp EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCE
T ss_pred cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceE
Confidence 9999999999999999998 4778999999999999999987652 255778899999
Q ss_pred EEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885 644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQV 722 (725)
Q Consensus 644 ~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~G 722 (725)
.++. +++. ++++++.|+.|++||+++++++..+.. ...|.+++|+|++.+|++++.|+.|++||+++++++..+.+
T Consensus 274 ~~~~--~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 350 (464)
T 3v7d_B 274 RTVS--GHGN-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG 350 (464)
T ss_dssp EEEE--EETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEc--CCCC-EEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC
Confidence 8874 5555 777999999999999999999998875 67899999999999999999999999999999999999999
Q ss_pred CCC
Q 004885 723 SHS 725 (725)
Q Consensus 723 H~s 725 (725)
|.+
T Consensus 351 h~~ 353 (464)
T 3v7d_B 351 HTA 353 (464)
T ss_dssp CSS
T ss_pred CCC
Confidence 964
No 64
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.1e-23 Score=228.09 Aligned_cols=219 Identities=13% Similarity=0.229 Sum_probs=178.9
Q ss_pred cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecC----CCCCCCCCccccccccCCCceeeeEEEe
Q 004885 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLS----PDDADPRDRVGRSAEVGKGFTFTEFQLI 551 (725)
Q Consensus 476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s----~~~~~~~~~~~~~~~~~~~~~~~~~~~l 551 (725)
+.+...+.++.|+|++. .++++|+.|+.|++|.. ..+... ..+.....+
T Consensus 42 ~~~~~~v~~~~~s~~~~--------------~~l~~~~~dg~i~iw~~~~~~~~~~~~-------------~~~~~~~~~ 94 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDE--------------SILAYGEKNSVARLARIVETDQEGKKY-------------WKLTIIAEL 94 (425)
T ss_dssp EEECSCCSEEEECSSCT--------------TEEEEEETBTEEEEEEEEEC------C-------------EEEEEEEEE
T ss_pred eeccCceEEEEECCCCC--------------cEEEEecCCceEEEEEEecccCCcccc-------------ccccccccc
Confidence 33445778888988764 38899999999999966 332100 001111222
Q ss_pred ----------cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 004885 552 ----------PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 621 (725)
Q Consensus 552 ----------~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtI 621 (725)
.+|.+.|++++|+|++++|++|+.|+.|+||| .+++.+..+..|...|++++|+|++.+|++++.|+.|
T Consensus 95 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 173 (425)
T 1r5m_A 95 RHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVT 173 (425)
T ss_dssp ECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCE
T ss_pred cccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeE
Confidence 23788999999999999999999999999999 6778888999999999999999999999999999999
Q ss_pred EEEECCCCCe-------------------------------------------------------eeEEEecCCCCeEEE
Q 004885 622 RVWDTENPDY-------------------------------------------------------SLRTFTGHSTTVMSL 646 (725)
Q Consensus 622 rvWDl~~~~~-------------------------------------------------------~l~~~~~h~~~V~sl 646 (725)
++||+.++.. .+..+..|...|.++
T Consensus 174 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~ 253 (425)
T 1r5m_A 174 ILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVL 253 (425)
T ss_dssp EEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEE
T ss_pred EEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEE
Confidence 9999976531 122445678899999
Q ss_pred EEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH 724 (725)
Q Consensus 647 ~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~ 724 (725)
+|+|++. +|++++.|+.|++||+++++++..+.. ...|.+++|+|++ .+++++.|+.|++||+++++++..+.+|.
T Consensus 254 ~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 330 (425)
T 1r5m_A 254 EFNDTNK-LLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDG 330 (425)
T ss_dssp EEETTTT-EEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTT
T ss_pred EECCCCC-EEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCC
Confidence 9999988 677888999999999999998888874 6789999999998 99999999999999999999999999885
No 65
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.93 E-value=1.3e-24 Score=230.43 Aligned_cols=216 Identities=15% Similarity=0.256 Sum_probs=178.7
Q ss_pred cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeC---CCcEEEecCCCCCCCCCccccccccCCCceeeeEEEec
Q 004885 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSL---DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP 552 (725)
Q Consensus 476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~---D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 552 (725)
..+...+.++.|+|++. .++++|+. |+.|++|....+. ... ....
T Consensus 15 ~~h~~~v~~~~~~p~~~--------------~l~~~~s~~~~d~~v~iw~~~~~~-----------------~~~-~~~~ 62 (357)
T 3i2n_A 15 KGFNYTVFDCKWVPCSA--------------KFVTMGNFARGTGVIQLYEIQHGD-----------------LKL-LREI 62 (357)
T ss_dssp EECSSCEEEEEECTTSS--------------EEEEEEC--CCCEEEEEEEECSSS-----------------EEE-EEEE
T ss_pred cCCCCceEEEEEcCCCc--------------eEEEecCccCCCcEEEEEeCCCCc-----------------ccc-eeee
Confidence 34677889999999775 47788887 9999999553321 111 1223
Q ss_pred CCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEECCCCe-EEEEeccCCCCeEEEEE------cCCCCEEEEEeCCCeEE
Q 004885 553 ASTSKVESCHFSPD---GKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRF------SPSLSRLATSSADRTVR 622 (725)
Q Consensus 553 ~H~~~V~~i~fSpd---g~~LaSgs~Dg~V~IWdl~~~~-~i~~l~~H~~~V~~Iaf------sPd~~~Lasgs~DgtIr 622 (725)
+|...|++++|+|+ +++|++|+.|+.|++||+.+++ .+..+.+|...|.+++| +|++.+|++++.|++|+
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 142 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence 78899999999998 6999999999999999999887 88899999999999965 67899999999999999
Q ss_pred EEECCCCCeeeEEEecCCC----CeEEEE----EccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEec--
Q 004885 623 VWDTENPDYSLRTFTGHST----TVMSLD----FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP-- 692 (725)
Q Consensus 623 vWDl~~~~~~l~~~~~h~~----~V~sl~----fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fsp-- 692 (725)
+||++++..++..+..|.+ .|.+++ |+|++. ++++++.|+.|++||+++++++....+...|.+++|+|
T Consensus 143 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~ 221 (357)
T 3i2n_A 143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEER-VVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKD 221 (357)
T ss_dssp EECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCC-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSS
T ss_pred EEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCC-EEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCC
Confidence 9999988756777766655 799998 677877 77789999999999999999888877788999999999
Q ss_pred -CCCEEEEEEcCCeEEEEECCCCeEEEEEe-----CCC
Q 004885 693 -RLGRILAAAIENYISILDVETQVCRLKLQ-----VSH 724 (725)
Q Consensus 693 -dg~~Lla~s~Dg~V~IwDl~tg~~v~~l~-----GH~ 724 (725)
++.+|++++.|+.|++||+++++++..+. +|.
T Consensus 222 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 259 (357)
T 3i2n_A 222 ISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHK 259 (357)
T ss_dssp SSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCS
T ss_pred CCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCc
Confidence 89999999999999999999876555444 775
No 66
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.93 E-value=2.8e-24 Score=232.39 Aligned_cols=211 Identities=18% Similarity=0.124 Sum_probs=168.5
Q ss_pred CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (725)
Q Consensus 477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~ 556 (725)
.+...+..+.|+|++ ..++++++.|+.|++|+... .....+.....|..
T Consensus 116 ~h~~~v~~~~~~~~~--------------~~~l~s~~~d~~i~iwd~~~-----------------~~~~~~~~~~~~~~ 164 (383)
T 3ei3_B 116 GPGDAITGMKFNQFN--------------TNQLFVSSIRGATTLRDFSG-----------------SVIQVFAKTDSWDY 164 (383)
T ss_dssp STTCBEEEEEEETTE--------------EEEEEEEETTTEEEEEETTS-----------------CEEEEEECCCCSSC
T ss_pred CcCCceeEEEeCCCC--------------CCEEEEEeCCCEEEEEECCC-----------------CceEEEeccCCCCC
Confidence 355677888888732 13899999999999995431 12233333345668
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCC---ee
Q 004885 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPD---YS 632 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~-~Lasgs~DgtIrvWDl~~~~---~~ 632 (725)
.|.+++|+|++++|++|+.|+.|++||+ +++.+..+.+|...|.+++|+|++. +|++++.|++|++||+++.. .+
T Consensus 165 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 243 (383)
T 3ei3_B 165 WYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSY 243 (383)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCE
T ss_pred CeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccce
Confidence 8999999999999999999999999999 5778889999999999999999998 99999999999999999732 24
Q ss_pred eEEEecCCCCeEEEEEcc-CCCeEEEEEeCCCcEEEEECCCCeeEEEEecC------------------CCeEEEEEecC
Q 004885 633 LRTFTGHSTTVMSLDFHP-SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------------------SGATQMRFQPR 693 (725)
Q Consensus 633 l~~~~~h~~~V~sl~fsP-~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~------------------~~V~sv~fspd 693 (725)
+..+ +|...|.+++|+| ++. +|++++.|+.|++||++++.++..+..+ ..+..++|+|+
T Consensus 244 ~~~~-~~~~~v~~~~~s~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~d 321 (383)
T 3ei3_B 244 IAEM-PHEKPVNAAYFNPTDST-KLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPD 321 (383)
T ss_dssp EEEE-ECSSCEEEEEECTTTSC-EEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCC
T ss_pred EEEe-cCCCceEEEEEcCCCCC-EEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCC
Confidence 4555 7999999999999 877 6778899999999999988776666521 22334555555
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885 694 LGRILAAAIENYISILDVETQVCRLKLQVS 723 (725)
Q Consensus 694 g~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH 723 (725)
+.+ +++.|+.|+|||+++++++..+.+|
T Consensus 322 g~~--s~s~d~~i~iwd~~~~~~~~~l~~~ 349 (383)
T 3ei3_B 322 DQL--LLNDKRTIDIYDANSGGLVHQLRDP 349 (383)
T ss_dssp TTT--CTTCCCCEEEEETTTCCEEEEECBT
T ss_pred ccc--ccCCCCeEEEEecCCCceeeeecCC
Confidence 544 5567999999999999999999985
No 67
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.93 E-value=3.1e-24 Score=227.89 Aligned_cols=221 Identities=19% Similarity=0.257 Sum_probs=179.2
Q ss_pred ccccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEe-
Q 004885 473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI- 551 (725)
Q Consensus 473 ~l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l- 551 (725)
.+...+...+.++.|+|+.. +....+++++.++.|++|....+ .....+...
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~-----------~~~~~~~~~~~~~~v~vw~~~~~----------------~~~~~~~~~~ 64 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSK-----------EGDPLVFATVGSNRVTLYECHSQ----------------GEIRLLQSYV 64 (366)
T ss_dssp EEECTTCSCEEEEEECTTCC-----------TTSCEEEEEEETTEEEEEEECGG----------------GCEEEEEEEE
T ss_pred EeecCCCCceEEEEEecccC-----------CCCceEEEECCCCEEEEEEcCCC----------------cEEEeeeecc
Confidence 34456778899999998622 11235555666679999954322 112222222
Q ss_pred -cCCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEE
Q 004885 552 -PASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD 625 (725)
Q Consensus 552 -~~H~~~V~~i~fSpd----g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWD 625 (725)
..|...|++++|+|+ +++|++|+.|+.|+|||+.+++.+..+.+|...|++++|+| ++.+|++++.|++|++||
T Consensus 65 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd 144 (366)
T 3k26_A 65 DADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWN 144 (366)
T ss_dssp CSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred ccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence 247889999999998 67999999999999999999999999999999999999999 899999999999999999
Q ss_pred CCCCCeeeEEE---ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe----------------------
Q 004885 626 TENPDYSLRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---------------------- 680 (725)
Q Consensus 626 l~~~~~~l~~~---~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~---------------------- 680 (725)
++++. .+..+ .+|...|.+++|+|++. +|++++.|+.|++||+++++.+..+.
T Consensus 145 ~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (366)
T 3k26_A 145 IQTDT-LVAIFGGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 222 (366)
T ss_dssp TTTTE-EEEEECSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCC
T ss_pred eecCe-EEEEecccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccC
Confidence 99877 67777 68999999999999987 66788899999999999876543332
Q ss_pred -------cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe--------------EEEEEeCCC
Q 004885 681 -------CQSGATQMRFQPRLGRILAAAIENYISILDVETQV--------------CRLKLQVSH 724 (725)
Q Consensus 681 -------~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~--------------~v~~l~GH~ 724 (725)
+...|.+++|+ +.+|++++.|+.|++||++++. ++..+.+|.
T Consensus 223 ~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (366)
T 3k26_A 223 DFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ 285 (366)
T ss_dssp SEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS
T ss_pred ccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccC
Confidence 46779999999 5799999999999999998874 488888875
No 68
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.93 E-value=2.2e-23 Score=229.76 Aligned_cols=200 Identities=19% Similarity=0.351 Sum_probs=177.3
Q ss_pred CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (725)
Q Consensus 505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl 584 (725)
.+.++++|+.|+.|++|.... .+.+..+.+|...|.++.| ++.+|++|+.|+.+++||.
T Consensus 158 dg~~lasgs~Dg~v~iWd~~~-------------------~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~ 216 (420)
T 4gga_A 158 EGNYLAVGTSSAEVQLWDVQQ-------------------QKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDV 216 (420)
T ss_dssp TSSEEEEEETTSCEEEEETTT-------------------TEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET
T ss_pred CCCEEEEEECCCeEEEEEcCC-------------------CcEEEEEeCCCCceEEEee--CCCEEEEEeCCCceeEeee
Confidence 345999999999999995432 2567788899999999988 4689999999999999998
Q ss_pred CC-CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC---eeeEEEecCCCCeEEEEEccCCCeEEEEE-
Q 004885 585 ES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSC- 659 (725)
Q Consensus 585 ~~-~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~---~~l~~~~~h~~~V~sl~fsP~g~~llaSg- 659 (725)
.. ...+.++.+|...+.++.|+|++.++++++.|+.|++||+.++. ..+..+..|...|.+++|+|.+..+++++
T Consensus 217 ~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~ 296 (420)
T 4gga_A 217 RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG 296 (420)
T ss_dssp TSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEE
T ss_pred cccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEe
Confidence 76 55677889999999999999999999999999999999998765 24567788999999999999988888765
Q ss_pred -eCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEE--cCCeEEEEECCCCeEEEEEeCCCC
Q 004885 660 -DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--IENYISILDVETQVCRLKLQVSHS 725 (725)
Q Consensus 660 -s~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s--~Dg~V~IwDl~tg~~v~~l~GH~s 725 (725)
+.|++|+|||+.++.++..+..+..+.++.|++++..+++++ .|+.|+|||+.+++++.+|.||.+
T Consensus 297 gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~ 365 (420)
T 4gga_A 297 GTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS 365 (420)
T ss_dssp CTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS
T ss_pred ecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCC
Confidence 478999999999999999999999999999999999998876 589999999999999999999974
No 69
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.93 E-value=2.5e-24 Score=238.47 Aligned_cols=225 Identities=15% Similarity=0.227 Sum_probs=184.5
Q ss_pred CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (725)
Q Consensus 477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~ 556 (725)
.+...+..+.|+|++. .++++|+.|+.|++|.......... .......+..+.+|..
T Consensus 126 ~h~~~v~~l~~~p~~~--------------~~lat~~~dg~V~vwd~~~~~~~~~---------~~~~~~~~~~~~~h~~ 182 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNA--------------CVIATKTPSSDVLVFDYTKHPSKPE---------PSGECQPDLRLRGHQK 182 (430)
T ss_dssp EESSCCSEEEEETTEE--------------EEEEEECSSSCEEEEEGGGSCSSCC---------TTCCCCCSEEEECCSS
T ss_pred cCCCcEEEEEECCCCC--------------cEEEEECCCCcEEEEECCCcccccC---------ccccCCCcEEecCCCC
Confidence 3445677788887522 4899999999999996543211100 0112345667789999
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeE-------EEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECC
Q 004885 557 KVESCHFSPDGK-LLATGGHDKKAVLWCTESFTV-------KSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTE 627 (725)
Q Consensus 557 ~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~~~~~-------i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~ 627 (725)
.|++++|+|++. +|++|+.||+|+|||+..+.. ...+.+|...|.+++|+| ++.+|++++.|+.|++||++
T Consensus 183 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~ 262 (430)
T 2xyi_A 183 EGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR 262 (430)
T ss_dssp CCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred CeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECC
Confidence 999999999988 999999999999999987321 456778999999999999 68899999999999999999
Q ss_pred CCC--eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC-CeeEEEEec-CCCeEEEEEecCCC-EEEEEEc
Q 004885 628 NPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKC-QSGATQMRFQPRLG-RILAAAI 702 (725)
Q Consensus 628 ~~~--~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t-~~~v~~~~~-~~~V~sv~fspdg~-~Lla~s~ 702 (725)
+.. .++..+..|...|++|+|+|++.++|++|+.||.|++||+++ ..++..+.. ...|++++|+|++. .|++++.
T Consensus 263 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~ 342 (430)
T 2xyi_A 263 NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 342 (430)
T ss_dssp CSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET
T ss_pred CCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC
Confidence 873 367788899999999999999988899999999999999998 566777764 77899999999985 5888888
Q ss_pred CCeEEEEECCC--------------CeEEEEEeCCC
Q 004885 703 ENYISILDVET--------------QVCRLKLQVSH 724 (725)
Q Consensus 703 Dg~V~IwDl~t--------------g~~v~~l~GH~ 724 (725)
|+.|+|||+.+ .+++..+.+|.
T Consensus 343 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 378 (430)
T 2xyi_A 343 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT 378 (430)
T ss_dssp TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCS
T ss_pred CCcEEEEeCCCCccccCccccccCCcceEEEcCCCC
Confidence 99999999987 47788888885
No 70
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.9e-25 Score=252.12 Aligned_cols=204 Identities=10% Similarity=0.079 Sum_probs=162.4
Q ss_pred CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC------CCEEEEEeCCCcE
Q 004885 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD------GKLLATGGHDKKA 579 (725)
Q Consensus 506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpd------g~~LaSgs~Dg~V 579 (725)
..++++++.|++|++|....+. ........+.+|.+.|.+|+|+|+ +.+||+|+.||+|
T Consensus 173 ~~~laS~s~D~tI~iWd~~~~~---------------~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dgtv 237 (524)
T 2j04_B 173 LEMFDKEKHSSCIQIFKMNTST---------------LHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTI 237 (524)
T ss_dssp ---------CEEEEEEEEETTT---------------CCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCE
T ss_pred hhhhccCCCCceEEEEEccCCC---------------CCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeE
Confidence 3467889999999999543221 111223456778899999999996 5799999999999
Q ss_pred EEEECCCCeE-----------EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEE--
Q 004885 580 VLWCTESFTV-----------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL-- 646 (725)
Q Consensus 580 ~IWdl~~~~~-----------i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl-- 646 (725)
+|||+..+.. ..++.+|...|++++|+++ ..|++|+.||+|++||++++..+...+.+|...|.+|
T Consensus 238 rlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~ 316 (524)
T 2j04_B 238 NFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVST 316 (524)
T ss_dssp EEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEE
T ss_pred EEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEE
Confidence 9999976532 3477889999999999986 4899999999999999998764667789999999999
Q ss_pred EEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC---CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVS 723 (725)
Q Consensus 647 ~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~---~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH 723 (725)
.|+|++..+|++|+.|++|+|||+++++++..+..+ ..|.+++|+|++..+++++.|++|++||++++.+++++.+|
T Consensus 317 ~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH 396 (524)
T 2j04_B 317 AYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSR 396 (524)
T ss_dssp ECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEEC
T ss_pred EcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecC
Confidence 567776458899999999999999998877666542 24889999999999999999999999999999999999998
Q ss_pred CC
Q 004885 724 HS 725 (725)
Q Consensus 724 ~s 725 (725)
.+
T Consensus 397 ~~ 398 (524)
T 2j04_B 397 ET 398 (524)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 71
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.93 E-value=2.5e-24 Score=236.41 Aligned_cols=227 Identities=15% Similarity=0.208 Sum_probs=171.9
Q ss_pred CCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCC------CCccccc--------------ccc
Q 004885 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADP------RDRVGRS--------------AEV 539 (725)
Q Consensus 480 ~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~------~~~~~~~--------------~~~ 539 (725)
..+..+.|++++. ..++++++.|+.|++|........ ....+.. ...
T Consensus 94 ~~V~~l~~~~~~~-------------~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 160 (447)
T 3dw8_B 94 EKINKIRWLPQKN-------------AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPM 160 (447)
T ss_dssp CCCCEEEECCCCS-------------SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEE
T ss_pred CceEEEEEcCCCC-------------cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccch
Confidence 5688889988762 137889999999999965432110 0000000 000
Q ss_pred CCCceeeeEEE-ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeEEEE-------eccCCCCeEEEEEcCCC-
Q 004885 540 GKGFTFTEFQL-IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKST-------LEEHTQWITDVRFSPSL- 609 (725)
Q Consensus 540 ~~~~~~~~~~~-l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~-~~~i~~-------l~~H~~~V~~IafsPd~- 609 (725)
........... ..+|...|++++|+|++++|++| .|++|+|||++. ...+.. +.+|...|++++|+|++
T Consensus 161 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 239 (447)
T 3dw8_B 161 DLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC 239 (447)
T ss_dssp EEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT
T ss_pred heeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC
Confidence 00001111223 46899999999999999999998 799999999984 444442 56899999999999998
Q ss_pred CEEEEEeCCCeEEEEECCCCCee---eEEEecCCC------------CeEEEEEccCCCeEEEEEeCCCcEEEEECCC-C
Q 004885 610 SRLATSSADRTVRVWDTENPDYS---LRTFTGHST------------TVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-G 673 (725)
Q Consensus 610 ~~Lasgs~DgtIrvWDl~~~~~~---l~~~~~h~~------------~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t-~ 673 (725)
.+|++|+.|++|++||++++..+ +..+.+|.. .|.+++|+|++. +|++++. +.|+|||+++ +
T Consensus 240 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~-~~v~iwd~~~~~ 317 (447)
T 3dw8_B 240 NTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRDY-LSVKVWDLNMEN 317 (447)
T ss_dssp TEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEES-SEEEEEETTCCS
T ss_pred cEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEeeC-CeEEEEeCCCCc
Confidence 99999999999999999987721 678888876 899999999988 5667777 9999999997 8
Q ss_pred eeEEEEecCCC----------------eEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885 674 SCAGVFKCQSG----------------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVS 723 (725)
Q Consensus 674 ~~v~~~~~~~~----------------V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH 723 (725)
.++..+..+.. +..++|+|++.+|++++.|+.|+|||+++++++ .+.+|
T Consensus 318 ~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~ 382 (447)
T 3dw8_B 318 RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEAS 382 (447)
T ss_dssp SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE-EEECC
T ss_pred cccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce-eeeec
Confidence 88888876443 334999999999999999999999999999876 55555
No 72
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=7.1e-24 Score=226.21 Aligned_cols=207 Identities=15% Similarity=0.246 Sum_probs=170.2
Q ss_pred CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (725)
Q Consensus 478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (725)
+...+.++.|+++. ...++++|+.|+.|++|....+ .+..+..+..|...
T Consensus 54 h~~~v~~~~~~~~~-------------~~~~l~s~~~dg~v~iwd~~~~-----------------~~~~~~~~~~~~~~ 103 (379)
T 3jrp_A 54 HEGPVWRVDWAHPK-------------FGTILASCSYDGKVLIWKEENG-----------------RWSQIAVHAVHSAS 103 (379)
T ss_dssp CSSCEEEEEECCGG-------------GCSEEEEEETTSCEEEEEEETT-----------------EEEEEEEECCCSSC
T ss_pred CCCcEEEEEeCCCC-------------CCCEEEEeccCCEEEEEEcCCC-----------------ceeEeeeecCCCcc
Confidence 44556666666541 1348999999999999954222 23466778889999
Q ss_pred eEEEEEcCC--CCEEEEEeCCCcEEEEECCCC--eEEEEeccCCCCeEEEEEcC-------------CCCEEEEEeCCCe
Q 004885 558 VESCHFSPD--GKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSP-------------SLSRLATSSADRT 620 (725)
Q Consensus 558 V~~i~fSpd--g~~LaSgs~Dg~V~IWdl~~~--~~i~~l~~H~~~V~~IafsP-------------d~~~Lasgs~Dgt 620 (725)
|.+++|+|+ +++|++++.|+.|++||+... .....+..|...|++++|+| ++.+|++++.|+.
T Consensus 104 v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 183 (379)
T 3jrp_A 104 VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 183 (379)
T ss_dssp EEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSC
T ss_pred eEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCe
Confidence 999999999 999999999999999999876 34456778999999999999 6999999999999
Q ss_pred EEEEECCCCC---eeeEEEecCCCCeEEEEEccCC--CeEEEEEeCCCcEEEEECCCCe---eEEEEe---cCCCeEEEE
Q 004885 621 VRVWDTENPD---YSLRTFTGHSTTVMSLDFHPSK--EDLLCSCDNNSEIRYWSINNGS---CAGVFK---CQSGATQMR 689 (725)
Q Consensus 621 IrvWDl~~~~---~~l~~~~~h~~~V~sl~fsP~g--~~llaSgs~Dg~I~IwDl~t~~---~v~~~~---~~~~V~sv~ 689 (725)
|++||+++.. .++..+.+|...|.+++|+|++ ..+|++++.||.|+|||++++. ....+. +...|++++
T Consensus 184 i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 263 (379)
T 3jrp_A 184 VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRAS 263 (379)
T ss_dssp EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEE
T ss_pred EEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEE
Confidence 9999998765 2456778899999999999994 4588899999999999999864 222222 356799999
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCC
Q 004885 690 FQPRLGRILAAAIENYISILDVETQ 714 (725)
Q Consensus 690 fspdg~~Lla~s~Dg~V~IwDl~tg 714 (725)
|+|++.+|++++.|+.|+|||++++
T Consensus 264 ~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 264 WSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp ECSSSCCEEEEESSSSEEEEEEEET
T ss_pred EcCCCCEEEEecCCCcEEEEeCCCC
Confidence 9999999999999999999999854
No 73
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.4e-24 Score=260.29 Aligned_cols=206 Identities=13% Similarity=0.114 Sum_probs=176.9
Q ss_pred cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST 555 (725)
Q Consensus 476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~ 555 (725)
+.+...+.+++|+|++. ++++|+.|+.|++|.... ..... ...|.
T Consensus 14 ~gh~~~V~~lafspdg~---------------~lAsgs~Dg~I~lw~~~~-------------------~~~~~-~~~~~ 58 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQN---------------LLAIATVTGEVHIYGQQQ-------------------VEVVI-KLEDR 58 (902)
T ss_dssp EECSSCEEEEEEETTTT---------------EEEEEETTSEEEEECSTT-------------------CEEEE-ECSSC
T ss_pred cCCCCCcEEEEECCCCC---------------EEEEEeCCCEEEEEeCCC-------------------cEEEE-EcCCC
Confidence 45567889999999887 999999999999994311 11222 23578
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee--
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-- 633 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l-- 633 (725)
..|.+++|+| +++|++++.|++|+|||+++++++..+. |...|++++|+|++.+|++|+.||+|++||+++.....
T Consensus 59 ~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~ 136 (902)
T 2oaj_A 59 SAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFK 136 (902)
T ss_dssp CCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccce
Confidence 8999999999 8899999999999999999999988886 77899999999999999999999999999999876211
Q ss_pred --------EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-------------------CCeE
Q 004885 634 --------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-------------------SGAT 686 (725)
Q Consensus 634 --------~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~-------------------~~V~ 686 (725)
..+.+|.+.|++|+|+|++..++++++.|+.| +||+++++++..+..+ ..|+
T Consensus 137 i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~ 215 (902)
T 2oaj_A 137 LDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVI 215 (902)
T ss_dssp ECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEE
T ss_pred eccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeE
Confidence 22367889999999999866688899999999 9999999999888754 5699
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 004885 687 QMRFQPRLGRILAAAIENYISILDVETQVCRLK 719 (725)
Q Consensus 687 sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~ 719 (725)
+++|+|+|.+|++++.|++|+|||+++++++..
T Consensus 216 ~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~ 248 (902)
T 2oaj_A 216 QSLYHPNSLHIITIHEDNSLVFWDANSGHMIMA 248 (902)
T ss_dssp EEEECTTSSEEEEEETTCCEEEEETTTCCEEEE
T ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCcEEEE
Confidence 999999999999999999999999999988764
No 74
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.92 E-value=9.7e-24 Score=262.82 Aligned_cols=214 Identities=22% Similarity=0.360 Sum_probs=190.6
Q ss_pred cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST 555 (725)
Q Consensus 476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~ 555 (725)
..+...+.++.|++++. ++++|+.|+.|++|....+ ..+..+.+|.
T Consensus 612 ~~h~~~v~~~~~s~~~~---------------~l~s~~~d~~i~vw~~~~~-------------------~~~~~~~~h~ 657 (1249)
T 3sfz_A 612 RPHTDAVYHACFSQDGQ---------------RIASCGADKTLQVFKAETG-------------------EKLLDIKAHE 657 (1249)
T ss_dssp CCCSSCEEEEEECTTSS---------------EEEEEETTSCEEEEETTTC-------------------CEEEEECCCS
T ss_pred ecccccEEEEEECCCCC---------------EEEEEeCCCeEEEEECCCC-------------------CEEEEeccCC
Confidence 34667789999999887 8999999999999954332 4567788999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCeee
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSL 633 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsP--d~~~Lasgs~DgtIrvWDl~~~~~~l 633 (725)
+.|++++|+|++++|++|+.|++|+|||+.+++.+..+.+|...|.+++|+| +..++++|+.|++|++||++++. ++
T Consensus 658 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~-~~ 736 (1249)
T 3sfz_A 658 DEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE-CR 736 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS-EE
T ss_pred CCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc-hh
Confidence 9999999999999999999999999999999999999999999999999999 56689999999999999999988 78
Q ss_pred EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe---------------------------------
Q 004885 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--------------------------------- 680 (725)
Q Consensus 634 ~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~--------------------------------- 680 (725)
..+.+|...|.+++|+|++. ++++++.||.|++||++++.+...+.
T Consensus 737 ~~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 815 (1249)
T 3sfz_A 737 NTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIV 815 (1249)
T ss_dssp EEECCCSSCEEEEEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEE
T ss_pred heecCCCCCEEEEEEecCCC-EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEE
Confidence 89999999999999999988 67799999999999998776544332
Q ss_pred -----------------------cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885 681 -----------------------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS 725 (725)
Q Consensus 681 -----------------------~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s 725 (725)
+...|.+++|+|++.++++++.|+.|++||+.++.++..+.+|.+
T Consensus 816 ~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~ 883 (1249)
T 3sfz_A 816 AAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS 883 (1249)
T ss_dssp EETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSS
T ss_pred EcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCcc
Confidence 245688999999999999999999999999999999999999964
No 75
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.92 E-value=2.3e-24 Score=235.46 Aligned_cols=192 Identities=17% Similarity=0.260 Sum_probs=164.2
Q ss_pred EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q 004885 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES 586 (725)
Q Consensus 508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~ 586 (725)
++++++.|+.|++|...... .....+..+.+|.+.|++++|+| ++++|++|+.|++|+|||+.+
T Consensus 49 ~~~~~~~~g~i~v~~~~~~~---------------~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 49 LICEASGGGAFLVLPLGKTG---------------RVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp EEBCCSSSCCEEEEETTCCE---------------ECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCT
T ss_pred EEEEEcCCCEEEEEECccCC---------------CCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccC
Confidence 55678899999999653321 11123445679999999999999 999999999999999999988
Q ss_pred C-------eEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCeeeEEE--ecCCCCeEEEEEccCCCeEE
Q 004885 587 F-------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTF--TGHSTTVMSLDFHPSKEDLL 656 (725)
Q Consensus 587 ~-------~~i~~l~~H~~~V~~IafsPd~-~~Lasgs~DgtIrvWDl~~~~~~l~~~--~~h~~~V~sl~fsP~g~~ll 656 (725)
+ +.+..+.+|...|++++|+|++ .+|++++.|++|++||++++. ++..+ .+|...|.+++|+|++. +|
T Consensus 114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l 191 (402)
T 2aq5_A 114 GGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-AVLTLGPDVHPDTIYSVDWSRDGA-LI 191 (402)
T ss_dssp TCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-EEEEECTTTCCSCEEEEEECTTSS-CE
T ss_pred CCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-ccEEEecCCCCCceEEEEECCCCC-EE
Confidence 7 6678899999999999999997 699999999999999999887 67788 78999999999999987 66
Q ss_pred EEEeCCCcEEEEECCCCeeEEEE-ecC-C-CeEEEEEecCCCEEEEE---EcCCeEEEEECCCCeE
Q 004885 657 CSCDNNSEIRYWSINNGSCAGVF-KCQ-S-GATQMRFQPRLGRILAA---AIENYISILDVETQVC 716 (725)
Q Consensus 657 aSgs~Dg~I~IwDl~t~~~v~~~-~~~-~-~V~sv~fspdg~~Lla~---s~Dg~V~IwDl~tg~~ 716 (725)
++++.|+.|++||+++++++..+ ..+ . .+.+++|+|++.+|+++ +.|+.|+|||+++++.
T Consensus 192 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~ 257 (402)
T 2aq5_A 192 CTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE 257 (402)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS
T ss_pred EEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC
Confidence 78889999999999999999888 342 3 38999999998888777 5799999999998753
No 76
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.92 E-value=1.1e-23 Score=222.42 Aligned_cols=214 Identities=13% Similarity=0.079 Sum_probs=177.9
Q ss_pred cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST 555 (725)
Q Consensus 476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~ 555 (725)
..+...+.++.|++++. ++++|+.|+.|++|..... ........+.+|.
T Consensus 8 ~~h~~~v~~~~~s~~~~---------------~l~~~~~d~~v~iw~~~~~----------------~~~~~~~~~~~~~ 56 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKS---------------LLLITSWDGSLTVYKFDIQ----------------AKNVDLLQSLRYK 56 (342)
T ss_dssp SCCSSCEEEEEEEGGGT---------------EEEEEETTSEEEEEEEETT----------------TTEEEEEEEEECS
T ss_pred cCCCCcEEEEEEcCCCC---------------EEEEEcCCCeEEEEEeCCC----------------CccccceeeeecC
Confidence 34566789999999876 8999999999999954332 1112334556899
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCcEEEEEC-CCCeEEEEecc--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC---
Q 004885 556 SKVESCHFSPDGK-LLATGGHDKKAVLWCT-ESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--- 628 (725)
Q Consensus 556 ~~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl-~~~~~i~~l~~--H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~--- 628 (725)
..|++++|+|+++ +|++|+.|+.|++||+ .++.. ..+.+ |...|++++|+| +.+|++++.|+.|++||+++
T Consensus 57 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~ 134 (342)
T 1yfq_A 57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGD 134 (342)
T ss_dssp SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTT
T ss_pred CceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccc
Confidence 9999999999999 9999999999999999 77655 67788 999999999999 99999999999999998765
Q ss_pred ------CCe-----------------------------------------eeEEEecCCCCeEEEEEcc-CCCeEEEEEe
Q 004885 629 ------PDY-----------------------------------------SLRTFTGHSTTVMSLDFHP-SKEDLLCSCD 660 (725)
Q Consensus 629 ------~~~-----------------------------------------~l~~~~~h~~~V~sl~fsP-~g~~llaSgs 660 (725)
... .......|...|.+++|+| ++. ++++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~ 213 (342)
T 1yfq_A 135 GVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE-GYACSS 213 (342)
T ss_dssp BCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC-EEEEEE
T ss_pred ccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCC-EEEEEe
Confidence 220 0112234566799999999 887 677888
Q ss_pred CCCcEEEEECCCC------eeEEEEecC-C---------CeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885 661 NNSEIRYWSINNG------SCAGVFKCQ-S---------GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVS 723 (725)
Q Consensus 661 ~Dg~I~IwDl~t~------~~v~~~~~~-~---------~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH 723 (725)
.||.|++||++.. ..+..+..+ . .|.+++|+|++.+|++++.|+.|+|||+++++++..+.+|
T Consensus 214 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 292 (342)
T 1yfq_A 214 IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292 (342)
T ss_dssp TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred cCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc
Confidence 9999999999887 777777753 2 8999999999999999999999999999999999999998
No 77
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.3e-23 Score=216.60 Aligned_cols=169 Identities=20% Similarity=0.368 Sum_probs=151.8
Q ss_pred eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEE
Q 004885 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624 (725)
Q Consensus 546 ~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvW 624 (725)
..+..+.+|...|.+++| ++++|++++.|+.|++|| ..+.+..+..|...|.+++|+| ++.+|++++.|+.|++|
T Consensus 95 ~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~ 170 (313)
T 3odt_A 95 DPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLW 170 (313)
T ss_dssp CC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred CcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEE
Confidence 445667899999999999 678999999999999999 6788888999999999999998 89999999999999999
Q ss_pred ECCCCCeeeEEEec-CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEc
Q 004885 625 DTENPDYSLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI 702 (725)
Q Consensus 625 Dl~~~~~~l~~~~~-h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~ 702 (725)
|.. . .+..+.. |...|.+++|+|++. +++++.|+.|++||+++++++..+.. ...|++++|+|++ .|++++.
T Consensus 171 d~~--~-~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~ 244 (313)
T 3odt_A 171 QND--K-VIKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGE 244 (313)
T ss_dssp ETT--E-EEEEECSSCSSCEEEEEEEETTE--EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEET
T ss_pred ecC--c-eEEEEeccCcccEEEEEEcCCCe--EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEec
Confidence 943 3 5667776 889999999999986 66889999999999999999999885 7789999999998 6899999
Q ss_pred CCeEEEEECCCCeEEEEEeCCC
Q 004885 703 ENYISILDVETQVCRLKLQVSH 724 (725)
Q Consensus 703 Dg~V~IwDl~tg~~v~~l~GH~ 724 (725)
|+.|++||+++++++..+.+|.
T Consensus 245 dg~v~iwd~~~~~~~~~~~~~~ 266 (313)
T 3odt_A 245 DRTVRIWSKENGSLKQVITLPA 266 (313)
T ss_dssp TSEEEEECTTTCCEEEEEECSS
T ss_pred CCEEEEEECCCCceeEEEeccC
Confidence 9999999999999999999886
No 78
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.92 E-value=1.2e-23 Score=224.59 Aligned_cols=201 Identities=11% Similarity=0.109 Sum_probs=169.1
Q ss_pred CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (725)
Q Consensus 478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (725)
+...+..+.|++++. ++++|+.|+.|++|..... .......+..|...
T Consensus 51 h~~~v~~~~~~~~~~---------------~l~~~~~dg~i~vwd~~~~-----------------~~~~~~~~~~~~~~ 98 (372)
T 1k8k_C 51 HNGQVTGVDWAPDSN---------------RIVTCGTDRNAYVWTLKGR-----------------TWKPTLVILRINRA 98 (372)
T ss_dssp CSSCEEEEEEETTTT---------------EEEEEETTSCEEEEEEETT-----------------EEEEEEECCCCSSC
T ss_pred CCCcccEEEEeCCCC---------------EEEEEcCCCeEEEEECCCC-----------------eeeeeEEeecCCCc
Confidence 445667777777654 8999999999999954221 22334455789999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCe----EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC------
Q 004885 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE------ 627 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~----~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~------ 627 (725)
|.+++|+|++++|++++.|+.|++||++... ......+|...|++++|+|++.+|++++.|+.|++||++
T Consensus 99 v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 178 (372)
T 1k8k_C 99 ARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEE 178 (372)
T ss_dssp EEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSC
T ss_pred eeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccc
Confidence 9999999999999999999999999998765 233346789999999999999999999999999999964
Q ss_pred ------------CCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCC
Q 004885 628 ------------NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRL 694 (725)
Q Consensus 628 ------------~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg 694 (725)
.+. ++..+.+|...|.+++|+|++. +|++++.|+.|++||+++++++..+.. ...|.+++|+|++
T Consensus 179 ~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 256 (372)
T 1k8k_C 179 RPAPTPWGSKMPFGE-LMFESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITES 256 (372)
T ss_dssp CCCCBTTBSCCCTTC-EEEECCCCSSCEEEEEECSSSS-EEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETT
T ss_pred cccccccccccchhh-heEecCCCCCeEEEEEECCCCC-EEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCC
Confidence 334 6788889999999999999987 677889999999999999999998886 5689999999997
Q ss_pred CEEEEEEcCCeEEEEECCC
Q 004885 695 GRILAAAIENYISILDVET 713 (725)
Q Consensus 695 ~~Lla~s~Dg~V~IwDl~t 713 (725)
.+|+++ .|+.|++||+++
T Consensus 257 ~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 257 SLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EEEEEE-TTSSCEEEEEET
T ss_pred CEEEEE-eCCeEEEEEccC
Confidence 766555 999999999988
No 79
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.2e-23 Score=233.90 Aligned_cols=210 Identities=15% Similarity=0.129 Sum_probs=177.8
Q ss_pred CCCeeEEEEecCCCccccccCCccCCCCcE-EEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEe--cCCC
Q 004885 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRF-VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI--PAST 555 (725)
Q Consensus 479 s~~~s~l~fs~dg~~~la~~s~~~~~~~~~-lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~H~ 555 (725)
...+.++.|+|++. + +++|+.|+.|++|..... .+ ..+..+ ..|.
T Consensus 102 ~~~v~~~~~s~d~~---------------~l~~~~~~dg~v~iwd~~~~--------------~~---~~~~~~~~~~~~ 149 (450)
T 2vdu_B 102 YSYIRNLRLTSDES---------------RLIACADSDKSLLVFDVDKT--------------SK---NVLKLRKRFCFS 149 (450)
T ss_dssp CCCEEEEEECTTSS---------------EEEEEEGGGTEEEEEEECSS--------------SS---SCEEEEEEEECS
T ss_pred CCceEEEEEcCCCC---------------EEEEEECCCCeEEEEECcCC--------------CC---ceeeeeecccCC
Confidence 44688999999886 5 589999999999965411 01 122233 3677
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE----EeccCCCCeEEEEEcCC---CCEEEEEeCCCeEEEEECCC
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS----TLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTEN 628 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~----~l~~H~~~V~~IafsPd---~~~Lasgs~DgtIrvWDl~~ 628 (725)
..|++++|+|++++|++|+.|+.|++|++.++.... .+.+|...|++++|+|+ +.+|++++.|++|++||+.+
T Consensus 150 ~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~ 229 (450)
T 2vdu_B 150 KRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ 229 (450)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC
T ss_pred CCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC
Confidence 899999999999999999999999999998766443 77889999999999999 99999999999999999998
Q ss_pred CCeeeEE-EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--------------------------
Q 004885 629 PDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------------------------- 681 (725)
Q Consensus 629 ~~~~l~~-~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-------------------------- 681 (725)
+. ++.. +.+|...|.+++|+ ++. +|++++.|+.|+|||+++++++..+..
T Consensus 230 ~~-~~~~~~~~h~~~v~~~~~s-d~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (450)
T 2vdu_B 230 CF-IVDKWLFGHKHFVSSICCG-KDY-LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDII 306 (450)
T ss_dssp TT-CEEEECCCCSSCEEEEEEC-STT-EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CB
T ss_pred Cc-eeeeeecCCCCceEEEEEC-CCC-EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccc
Confidence 87 4555 66899999999999 877 777999999999999999999888863
Q ss_pred CCCeEEEEEecCCCEEEEEE-cCCeEEEEEC--CCC---eEEEEEeCC
Q 004885 682 QSGATQMRFQPRLGRILAAA-IENYISILDV--ETQ---VCRLKLQVS 723 (725)
Q Consensus 682 ~~~V~sv~fspdg~~Lla~s-~Dg~V~IwDl--~tg---~~v~~l~GH 723 (725)
...|.+++|+|++.+|++++ .|+.|+|||+ .++ +++..+.+|
T Consensus 307 ~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~ 354 (450)
T 2vdu_B 307 EFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP 354 (450)
T ss_dssp CCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS
T ss_pred eEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC
Confidence 24689999999999999999 7999999999 666 888888877
No 80
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.2e-24 Score=246.74 Aligned_cols=215 Identities=10% Similarity=0.047 Sum_probs=171.1
Q ss_pred CCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCe
Q 004885 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV 558 (725)
Q Consensus 479 s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V 558 (725)
...+..+.|+|++. ..+...+|++|+.|++|++|............. ........+.+|...|
T Consensus 207 ~~~V~~v~wsp~~~---------~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~--------~~~~p~~~l~~h~~~v 269 (524)
T 2j04_B 207 FGEVWDLKWHEGCH---------APHLVGCLSFVSQEGTINFLEIIDNATDVHVFK--------MCEKPSLTLSLADSLI 269 (524)
T ss_dssp CCSEEEEEECSSCC---------CSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE--------CCCSCSEEECCTTTCE
T ss_pred CCcEEEEEECCCCC---------CCCCCceEEEEecCCeEEEEEcCCCccccccce--------eecCceEEEEcCCCCE
Confidence 34678888998642 112245899999999999997654421100000 0012334678999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEeccCCCCeEEE--EEcCCC-CEEEEEeCCCeEEEEECCCCCeeeE
Q 004885 559 ESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDV--RFSPSL-SRLATSSADRTVRVWDTENPDYSLR 634 (725)
Q Consensus 559 ~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~-~~i~~l~~H~~~V~~I--afsPd~-~~Lasgs~DgtIrvWDl~~~~~~l~ 634 (725)
+|++|+++ ..|++|+.||+|++||++++ .+...+.+|...|++| +|+|++ .+|+||+.|++|+|||++++. ++.
T Consensus 270 ~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~-~~~ 347 (524)
T 2j04_B 270 TTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA-TTK 347 (524)
T ss_dssp EEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH-HHC
T ss_pred EEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC-ccc
Confidence 99999986 48999999999999999875 4456788999999999 567787 899999999999999999876 566
Q ss_pred EEecCCC--CeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004885 635 TFTGHST--TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDV 711 (725)
Q Consensus 635 ~~~~h~~--~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl 711 (725)
.+.+|.. .|.+|+|+|++. .+++++.|++|++||++++.++..+.. ...|++|+|+|++.+|++|+.|++|+|||+
T Consensus 348 ~~~~~~~~~~v~~v~fsp~~~-~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 348 TTVSRFRGSNLVPVVYCPQIY-SYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNA 426 (524)
T ss_dssp EEEEECSCCSCCCEEEETTTT-EEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred ccccccccCcccceEeCCCcC-eEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence 6667653 588999999988 567888899999999999988776654 678999999999999999999999999997
Q ss_pred CC
Q 004885 712 ET 713 (725)
Q Consensus 712 ~t 713 (725)
..
T Consensus 427 ~~ 428 (524)
T 2j04_B 427 AR 428 (524)
T ss_dssp CS
T ss_pred hH
Confidence 64
No 81
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.92 E-value=1.4e-23 Score=226.26 Aligned_cols=218 Identities=14% Similarity=0.258 Sum_probs=180.5
Q ss_pred cCCCCCeeEEEEec-CCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEE-----
Q 004885 476 HNGASSKSLLMFGS-DGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQ----- 549 (725)
Q Consensus 476 ~s~s~~~s~l~fs~-dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~----- 549 (725)
..+...+.++.|+| ++. ++++|+.|+.|++|........... ......
T Consensus 40 ~~h~~~v~~~~~s~~~~~---------------~l~~~~~dg~i~iw~~~~~~~~~~~-----------~~~~~~~~~~~ 93 (408)
T 4a11_B 40 RIHGGGINTLDIEPVEGR---------------YMLSGGSDGVIVLYDLENSSRQSYY-----------TCKAVCSIGRD 93 (408)
T ss_dssp CCCSSCEEEEEECTTTCC---------------EEEEEETTSCEEEEECCCCSSSSCE-----------EECEEEEECTT
T ss_pred eccCCcEEEEEEecCCCC---------------EEEEEcCCCeEEEEECCCCcccceE-----------ecccccccccc
Confidence 34667889999999 776 8999999999999976554321111 111111
Q ss_pred EecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCC---CCEEEEEeCCCeEEEEE
Q 004885 550 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWD 625 (725)
Q Consensus 550 ~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd---~~~Lasgs~DgtIrvWD 625 (725)
...+|...|++++|+| ++.+|++++.|+.|++||+.+++.+..+. +...+.++.|+|. +.+|++++.|+.|++||
T Consensus 94 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 172 (408)
T 4a11_B 94 HPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD 172 (408)
T ss_dssp CTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred ccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence 1246999999999999 77899999999999999999999888776 7888999999994 45999999999999999
Q ss_pred CCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe-eEEEE----------------ecCCCeEEE
Q 004885 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVF----------------KCQSGATQM 688 (725)
Q Consensus 626 l~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~-~v~~~----------------~~~~~V~sv 688 (725)
++++. .+..+.+|...|.+++|+|++.+++++++.||.|++||++++. ++..+ .+...|.++
T Consensus 173 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 251 (408)
T 4a11_B 173 LKSGS-CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL 251 (408)
T ss_dssp SSSSC-CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred CCCcc-eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence 99887 7888999999999999999999888899999999999998765 44443 235679999
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 689 RFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 689 ~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
+|+|++.+|++++.|+.|++||+++++.+..+.
T Consensus 252 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 284 (408)
T 4a11_B 252 CFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNY 284 (408)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCBCCCCC
T ss_pred EEcCCCCEEEEecCCCeEEEEECCCCccceecc
Confidence 999999999999999999999999987655443
No 82
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.92 E-value=1.4e-23 Score=239.43 Aligned_cols=212 Identities=15% Similarity=0.176 Sum_probs=184.7
Q ss_pred CCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC-
Q 004885 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK- 557 (725)
Q Consensus 479 s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~- 557 (725)
...+.++.|+|++. ++++++ |+.|++|...... ........+.+|.+.
T Consensus 18 ~~~v~~~~~spdg~---------------~l~~~~-~~~v~v~~~~~~~---------------~~~~~~~~~~~h~~~~ 66 (615)
T 1pgu_A 18 RNFTTHLSYDPTTN---------------AIAYPC-GKSAFVRCLDDGD---------------SKVPPVVQFTGHGSSV 66 (615)
T ss_dssp TTCCCCCEEETTTT---------------EEEEEE-TTEEEEEECCSSC---------------CSSCSEEEECTTTTSC
T ss_pred cCceeEEEECCCCC---------------EEEEec-CCeEEEEECCCCC---------------CccccceEEecCCCce
Confidence 44677889999887 788887 8899999543221 011456778899999
Q ss_pred eEEEEEcC--CCCEEEEEeCCCcEEEEECCCC--------eEEEEeccCCCCeEEEEEcCCCCEEEEEeCC----CeEEE
Q 004885 558 VESCHFSP--DGKLLATGGHDKKAVLWCTESF--------TVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRV 623 (725)
Q Consensus 558 V~~i~fSp--dg~~LaSgs~Dg~V~IWdl~~~--------~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D----gtIrv 623 (725)
|++++|+| ++++|++|+.|++|+|||+.++ ..+..+..|...|.+++|+|++++|++++.| +.|++
T Consensus 67 v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~ 146 (615)
T 1pgu_A 67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFIS 146 (615)
T ss_dssp EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEE
T ss_pred EEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEE
Confidence 99999999 9999999999999999999744 6777888999999999999999999999988 68888
Q ss_pred EECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CC---CeEEEEEecC-CCEEE
Q 004885 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QS---GATQMRFQPR-LGRIL 698 (725)
Q Consensus 624 WDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~---~V~sv~fspd-g~~Ll 698 (725)
|| .+. .+..+.+|...|.+++|+|++..++++++.|+.|++||+++++++..+.. .. .|++++|+|+ +.+|+
T Consensus 147 ~d--~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 223 (615)
T 1pgu_A 147 WD--SGN-SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVI 223 (615)
T ss_dssp TT--TCC-EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEE
T ss_pred EE--CCC-cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEE
Confidence 88 344 68889999999999999999987888999999999999999999999885 45 7999999999 99999
Q ss_pred EEEcCCeEEEEECCCCeEEEEE-e---CCC
Q 004885 699 AAAIENYISILDVETQVCRLKL-Q---VSH 724 (725)
Q Consensus 699 a~s~Dg~V~IwDl~tg~~v~~l-~---GH~ 724 (725)
+++.|+.|++||+++++++..+ . +|.
T Consensus 224 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 253 (615)
T 1pgu_A 224 TVGSDRKISCFDGKSGEFLKYIEDDQEPVQ 253 (615)
T ss_dssp EEETTCCEEEEETTTCCEEEECCBTTBCCC
T ss_pred EEeCCCeEEEEECCCCCEeEEecccccccC
Confidence 9999999999999999999999 5 775
No 83
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.92 E-value=2.7e-23 Score=227.43 Aligned_cols=194 Identities=18% Similarity=0.226 Sum_probs=168.3
Q ss_pred EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004885 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (725)
Q Consensus 508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~ 586 (725)
.+++++.|+.|++|....+ .....+. .|...|++++|+|++++|++|+.||.|+|||+.+
T Consensus 105 ~l~~~~~d~~v~lw~~~~~-------------------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 165 (401)
T 4aez_A 105 NVVAVALERNVYVWNADSG-------------------SVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES 165 (401)
T ss_dssp SEEEEEETTEEEEEETTTC-------------------CEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CEEEEECCCeEEEeeCCCC-------------------cEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC
Confidence 3567889999999955333 1222233 3889999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEE
Q 004885 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (725)
Q Consensus 587 ~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~ 666 (725)
++.+..+.+|...|.+++|+ +.+|++++.|+.|++||++.....+..+.+|...|.+++|+|++. +|++++.|+.|+
T Consensus 166 ~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v~ 242 (401)
T 4aez_A 166 QTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL-QLASGGNDNVVQ 242 (401)
T ss_dssp CCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEE
T ss_pred CeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCC-EEEEEeCCCeEE
Confidence 99999999999999999994 579999999999999999966657889999999999999999987 777999999999
Q ss_pred EEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEE---cCCeEEEEECCCCeEEEEEeCC
Q 004885 667 YWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAA---IENYISILDVETQVCRLKLQVS 723 (725)
Q Consensus 667 IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s---~Dg~V~IwDl~tg~~v~~l~GH 723 (725)
+||++++.++..+.. ...|.+++|+|++..+++++ .|+.|++||+++++++..+..+
T Consensus 243 iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~ 303 (401)
T 4aez_A 243 IWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG 303 (401)
T ss_dssp EEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS
T ss_pred EccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC
Confidence 999999999888864 67899999999877666654 4999999999999999988754
No 84
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.92 E-value=2.9e-23 Score=229.95 Aligned_cols=212 Identities=18% Similarity=0.309 Sum_probs=176.9
Q ss_pred CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (725)
Q Consensus 477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~ 556 (725)
.+...+..+.|++++. .++++|+.|+.|++|....... ....+.....+.+|..
T Consensus 179 ~h~~~v~~l~~~~~~~--------------~~l~s~~~dg~i~vwd~~~~~~------------~~~~~~~~~~~~~h~~ 232 (430)
T 2xyi_A 179 GHQKEGYGLSWNPNLN--------------GYLLSASDDHTICLWDINATPK------------EHRVIDAKNIFTGHTA 232 (430)
T ss_dssp CCSSCCCCEEECTTST--------------TEEEEECTTSCEEEEETTSCCB------------GGGEEECSEEECCCSS
T ss_pred CCCCCeEEEEeCCCCC--------------CeEEEEeCCCeEEEEeCCCCCC------------CCceeccceeecCCCC
Confidence 3444667788887654 3889999999999996654311 1122334566779999
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC---eEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCe
Q 004885 557 KVESCHFSP-DGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDY 631 (725)
Q Consensus 557 ~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~---~~i~~l~~H~~~V~~IafsPd~~-~Lasgs~DgtIrvWDl~~~~~ 631 (725)
.|.+++|+| ++.+|++++.|+.|+|||+++. +.+..+..|...|++|+|+|++. +|++|+.|++|++||+++...
T Consensus 233 ~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~ 312 (430)
T 2xyi_A 233 VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 312 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS
T ss_pred CEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC
Confidence 999999999 6789999999999999999876 57778889999999999999876 688999999999999998665
Q ss_pred eeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC--------------CeeEEEEec-CCCeEEEEEecCCC-
Q 004885 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--------------GSCAGVFKC-QSGATQMRFQPRLG- 695 (725)
Q Consensus 632 ~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t--------------~~~v~~~~~-~~~V~sv~fspdg~- 695 (725)
++..+.+|...|.+|+|+|++..+|++++.|+.|+|||+.. ..++..+.. ...|++++|+|++.
T Consensus 313 ~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 392 (430)
T 2xyi_A 313 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 392 (430)
T ss_dssp CSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTT
T ss_pred CeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCC
Confidence 78999999999999999999988899999999999999986 245555544 56799999999998
Q ss_pred EEEEEEcCCeEEEEECCCC
Q 004885 696 RILAAAIENYISILDVETQ 714 (725)
Q Consensus 696 ~Lla~s~Dg~V~IwDl~tg 714 (725)
.|++++.|+.|+||++...
T Consensus 393 ~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 393 IICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEEEEETTSEEEEEEECHH
T ss_pred EEEEEECCCCEEEeEcccc
Confidence 8888999999999998753
No 85
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.5e-24 Score=237.03 Aligned_cols=208 Identities=9% Similarity=0.148 Sum_probs=168.1
Q ss_pred cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEe--cC--CCCCeEEEE--EcCCCCEEEEEeCCCcEE
Q 004885 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI--PA--STSKVESCH--FSPDGKLLATGGHDKKAV 580 (725)
Q Consensus 507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~--H~~~V~~i~--fSpdg~~LaSgs~Dg~V~ 580 (725)
.++++|+.|+.|++|+......+. .. .......+..+ .. +...+.++. +++++++|++|+.|+.|+
T Consensus 124 ~~l~s~s~dg~i~vwd~~~~~~~~-----~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 195 (437)
T 3gre_A 124 DAFAVSSKDGQIIVLKVNHYQQES-----EV---KFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVI 195 (437)
T ss_dssp SEEEEEETTSEEEEEEEEEEEETT-----EE---EEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEE
T ss_pred CEEEEEeCCCEEEEEEeccccCCc-----ee---eccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEE
Confidence 489999999999999653110000 00 00011122222 22 677899988 668999999999999999
Q ss_pred EEECCCCeEEEEecc--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEe-cCCCCeEEEEEccC---CCe
Q 004885 581 LWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPS---KED 654 (725)
Q Consensus 581 IWdl~~~~~i~~l~~--H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~-~h~~~V~sl~fsP~---g~~ 654 (725)
+||+++++.+..+.+ |...|++++|+|++.+|++|+.|++|++||++++. ++..+. .|...|.+++|+|. ...
T Consensus 196 iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~s~~~~ 274 (437)
T 3gre_A 196 IFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNV-LIRSWSFGDHAPITHVEVCQFYGKNSV 274 (437)
T ss_dssp EEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTE-EEEEEBCTTCEEEEEEEECTTTCTTEE
T ss_pred EEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCcc-EEEEEecCCCCceEEEEeccccCCCcc
Confidence 999999999999988 89999999999999999999999999999999876 677775 78889999977764 233
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEEEec---------------------------CCCeEEEEEecCCCEEEEEEcCCeEE
Q 004885 655 LLCSCDNNSEIRYWSINNGSCAGVFKC---------------------------QSGATQMRFQPRLGRILAAAIENYIS 707 (725)
Q Consensus 655 llaSgs~Dg~I~IwDl~t~~~v~~~~~---------------------------~~~V~sv~fspdg~~Lla~s~Dg~V~ 707 (725)
+|++++.|+.|+|||+++++++..+.. ...|++++|+ ++.+|++++.|+.|+
T Consensus 275 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~ 353 (437)
T 3gre_A 275 IVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIV 353 (437)
T ss_dssp EEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEE
T ss_pred EEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEE
Confidence 788999999999999999999988872 2348899999 668899999999999
Q ss_pred EEECCCCeEEEEEeCCC
Q 004885 708 ILDVETQVCRLKLQVSH 724 (725)
Q Consensus 708 IwDl~tg~~v~~l~GH~ 724 (725)
+||+++++++..+.+|.
T Consensus 354 ~wd~~~~~~~~~~~~~~ 370 (437)
T 3gre_A 354 MFSLNELSSSKAVISPS 370 (437)
T ss_dssp EEETTCGGGCEEEECC-
T ss_pred EEECCCcccceEEeccc
Confidence 99999999999998873
No 86
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.92 E-value=7e-24 Score=230.30 Aligned_cols=214 Identities=19% Similarity=0.312 Sum_probs=177.1
Q ss_pred CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (725)
Q Consensus 478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (725)
+...+.++.|++++ ..++++|+.|+.|++|+......... .........+..|...
T Consensus 112 h~~~v~~~~~~~~~--------------~~~l~s~~~dg~v~iwd~~~~~~~~~----------~~~~~~~~~~~~~~~~ 167 (416)
T 2pm9_A 112 HSSSVKTVKFNAKQ--------------DNVLASGGNNGEIFIWDMNKCTESPS----------NYTPLTPGQSMSSVDE 167 (416)
T ss_dssp SSSCCCEEEECSSS--------------TTBEEEECSSSCEEBCBTTTTSSCTT----------TCCCBCCCCSCCSSCC
T ss_pred CccceEEEEEcCCC--------------CCEEEEEcCCCeEEEEECCCCccccc----------cccccccccccCCCCC
Confidence 44566777777762 24899999999999997654421100 0011112234678999
Q ss_pred eEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEeccC------CCCeEEEEEcCCC-CEEEEEeCCC---eEEEEEC
Q 004885 558 VESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEH------TQWITDVRFSPSL-SRLATSSADR---TVRVWDT 626 (725)
Q Consensus 558 V~~i~fSpd-g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H------~~~V~~IafsPd~-~~Lasgs~Dg---tIrvWDl 626 (725)
|.+++|+|+ +.+|++++.|+.|++||+++++.+..+..| ...|++++|+|++ .+|++++.|+ .|++||+
T Consensus 168 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~ 247 (416)
T 2pm9_A 168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL 247 (416)
T ss_dssp CCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred eeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence 999999998 789999999999999999999999888876 7899999999986 6899999998 9999999
Q ss_pred CCCCeeeEEEe-cCCCCeEEEEEcc-CCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCC-CEEEEEEc
Q 004885 627 ENPDYSLRTFT-GHSTTVMSLDFHP-SKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRL-GRILAAAI 702 (725)
Q Consensus 627 ~~~~~~l~~~~-~h~~~V~sl~fsP-~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg-~~Lla~s~ 702 (725)
++...++..+. +|...|.+++|+| ++. +|++++.|+.|++||+++++++..+.. ...|++++|+|++ .+|++++.
T Consensus 248 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~ 326 (416)
T 2pm9_A 248 RNANTPLQTLNQGHQKGILSLDWCHQDEH-LLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASF 326 (416)
T ss_dssp TSTTSCSBCCCSCCSSCEEEEEECSSCSS-CEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCS
T ss_pred CCCCCCcEEeecCccCceeEEEeCCCCCC-eEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEec
Confidence 98755777888 8999999999999 655 777999999999999999999998876 6779999999998 78999999
Q ss_pred CCeEEEEECCCCeE
Q 004885 703 ENYISILDVETQVC 716 (725)
Q Consensus 703 Dg~V~IwDl~tg~~ 716 (725)
|+.|+|||+.++..
T Consensus 327 d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 327 DNKIEVQTLQNLTN 340 (416)
T ss_dssp SSEEEEEESCCCCC
T ss_pred CCcEEEEEccCCCC
Confidence 99999999988753
No 87
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.92 E-value=3e-23 Score=246.07 Aligned_cols=212 Identities=22% Similarity=0.324 Sum_probs=186.7
Q ss_pred CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (725)
Q Consensus 477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~ 556 (725)
.+...+.++.|+|++. ++++|+.|+.|++|....+ +.+..+.+|.+
T Consensus 53 ~~~~~v~~~~~s~~~~---------------~l~~~~~dg~i~vw~~~~~-------------------~~~~~~~~~~~ 98 (814)
T 3mkq_A 53 VTETPVRAGKFIARKN---------------WIIVGSDDFRIRVFNYNTG-------------------EKVVDFEAHPD 98 (814)
T ss_dssp CCSSCEEEEEEEGGGT---------------EEEEEETTSEEEEEETTTC-------------------CEEEEEECCSS
T ss_pred cCCCcEEEEEEeCCCC---------------EEEEEeCCCeEEEEECCCC-------------------cEEEEEecCCC
Confidence 3455678888888776 8999999999999954332 45667789999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeE
Q 004885 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLR 634 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~-~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~~l~ 634 (725)
.|++++|+|++++|++++.|++|++||+.++ .....+.+|...|++++|+| ++.+|++++.|++|++||+.++. ...
T Consensus 99 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-~~~ 177 (814)
T 3mkq_A 99 YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-PNF 177 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS-CSE
T ss_pred CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-cee
Confidence 9999999999999999999999999999886 77788899999999999999 78899999999999999998877 444
Q ss_pred EEec-CCCCeEEEEEcc--CCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004885 635 TFTG-HSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILD 710 (725)
Q Consensus 635 ~~~~-h~~~V~sl~fsP--~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwD 710 (725)
.+.. +...|.+++|+| ++. ++++++.||.|++||++++.++..+.. ...|++++|+|++.+|++++.||.|++||
T Consensus 178 ~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd 256 (814)
T 3mkq_A 178 TLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256 (814)
T ss_dssp EEECCCTTCCCEEEECCSTTCC-EEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred EEecCCCCCEEEEEEEECCCCC-EEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 5544 448899999999 776 777899999999999999999998885 67899999999999999999999999999
Q ss_pred CCCCeEEEEEeCCC
Q 004885 711 VETQVCRLKLQVSH 724 (725)
Q Consensus 711 l~tg~~v~~l~GH~ 724 (725)
+.+++++..+..|.
T Consensus 257 ~~~~~~~~~~~~~~ 270 (814)
T 3mkq_A 257 SSTYKVEKTLNVGL 270 (814)
T ss_dssp TTTCSEEEEECCSS
T ss_pred CCCCcEEEEeecCC
Confidence 99999999998874
No 88
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.8e-23 Score=213.52 Aligned_cols=167 Identities=20% Similarity=0.318 Sum_probs=148.8
Q ss_pred eeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 004885 546 TEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRV 623 (725)
Q Consensus 546 ~~~~~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~-H~~~V~~IafsPd~~~Lasgs~DgtIrv 623 (725)
..+..+..|...|.+++|+| ++++|++++.|+.|++|| ..+.+..+.. |...|.+++|+|++. |++++.|+.|++
T Consensus 133 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i 209 (313)
T 3odt_A 133 SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKL 209 (313)
T ss_dssp EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEE
T ss_pred cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEE
Confidence 45567788999999999998 899999999999999999 4566777777 899999999999987 999999999999
Q ss_pred EECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEc
Q 004885 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI 702 (725)
Q Consensus 624 WDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~ 702 (725)
||++++. ++..+.+|...|.+++|+|++. +++++.|+.|++||+++++++..+.. ...|.+++|+|++. +++++.
T Consensus 210 ~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~ 285 (313)
T 3odt_A 210 VDMHTGD-VLRTYEGHESFVYCIKLLPNGD--IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSS 285 (313)
T ss_dssp EETTTCC-EEEEEECCSSCEEEEEECTTSC--EEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEET
T ss_pred EECCchh-hhhhhhcCCceEEEEEEecCCC--EEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeC
Confidence 9999987 7889999999999999999984 66888999999999999999998886 55899999999987 778999
Q ss_pred CCeEEEEECCCCeEEEE
Q 004885 703 ENYISILDVETQVCRLK 719 (725)
Q Consensus 703 Dg~V~IwDl~tg~~v~~ 719 (725)
|+.|+|||+++++.+..
T Consensus 286 dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 286 DNLVRIFSQEKSRWASE 302 (313)
T ss_dssp TSCEEEEESCGGGCCC-
T ss_pred CCcEEEEeCCCCceeeh
Confidence 99999999998865443
No 89
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.92 E-value=8.9e-24 Score=223.89 Aligned_cols=199 Identities=15% Similarity=0.166 Sum_probs=164.7
Q ss_pred CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEE------cCCCCEEEEEeCCCcE
Q 004885 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHF------SPDGKLLATGGHDKKA 579 (725)
Q Consensus 506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~f------Spdg~~LaSgs~Dg~V 579 (725)
..++++|+.|+.|++|...... ..+..+.+|...|.+++| +|++++|++++.|+.|
T Consensus 80 ~~~l~~~~~dg~i~iwd~~~~~------------------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i 141 (357)
T 3i2n_A 80 QRYLATGDFGGNLHIWNLEAPE------------------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV 141 (357)
T ss_dssp TCCEEEEETTSCEEEECTTSCS------------------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred CceEEEecCCCeEEEEeCCCCC------------------ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence 3589999999999999554331 134567799999999955 6799999999999999
Q ss_pred EEEECCCCe-EEEEeccCCC----CeEEEE----EcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEcc
Q 004885 580 VLWCTESFT-VKSTLEEHTQ----WITDVR----FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP 650 (725)
Q Consensus 580 ~IWdl~~~~-~i~~l~~H~~----~V~~Ia----fsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP 650 (725)
++||++++. .+..+..|.. .|.+++ |+|++.+|++++.|+.|++||++++. ......|...|.+++|+|
T Consensus 142 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~v~~~~~~~ 219 (357)
T 3i2n_A 142 KVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA--LRWETNIKNGVCSLEFDR 219 (357)
T ss_dssp EEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE--EEEEEECSSCEEEEEESC
T ss_pred EEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc--eeeecCCCCceEEEEcCC
Confidence 999999876 6777766654 899998 67899999999999999999999876 345567889999999999
Q ss_pred ---CCCeEEEEEeCCCcEEEEECCCCeeEEEEe------cCCCeEEEEEecCCC-EEEEEEcCCeEEEEECCCC------
Q 004885 651 ---SKEDLLCSCDNNSEIRYWSINNGSCAGVFK------CQSGATQMRFQPRLG-RILAAAIENYISILDVETQ------ 714 (725)
Q Consensus 651 ---~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~------~~~~V~sv~fspdg~-~Lla~s~Dg~V~IwDl~tg------ 714 (725)
++. ++++++.||.|++||++++.++..+. +...|++++|+|++. +|++++.|+.|+|||++++
T Consensus 220 ~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 298 (357)
T 3i2n_A 220 KDISMN-KLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKK 298 (357)
T ss_dssp SSSSCC-EEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--C
T ss_pred CCCCCC-EEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccc
Confidence 776 66788999999999999877655443 467899999999988 7888999999999999864
Q ss_pred -------------eEEEEEeCCCC
Q 004885 715 -------------VCRLKLQVSHS 725 (725)
Q Consensus 715 -------------~~v~~l~GH~s 725 (725)
+++..+.+|.+
T Consensus 299 ~~~g~~~~~~~~~~~~~~~~~~~~ 322 (357)
T 3i2n_A 299 DSEGIEMGVAGSVSLLQNVTLSTQ 322 (357)
T ss_dssp CTTSCCCCCCCEEEEEEEEECCSS
T ss_pred cCCCCccccccccceeeccccCCC
Confidence 57888888863
No 90
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.92 E-value=4.8e-23 Score=223.94 Aligned_cols=169 Identities=15% Similarity=0.121 Sum_probs=137.6
Q ss_pred CCCCeEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 004885 554 STSKVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSg--s~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~ 631 (725)
+...|.+++|||||++|+++ +.|++|+|||+.+++++..+. |...|++|+|+|++++|++++.|+ +++|+..++..
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~ 209 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSC 209 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCE
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcc
Confidence 44568999999999987655 478999999999999998886 778899999999999999998554 66666666653
Q ss_pred ee-EEEecCCCCeEEEEEccCCCeEEEEEeCCC----cEEEEECCCCeeE----EEEec-CCCeEEEEEecCCCEEEEEE
Q 004885 632 SL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNGSCA----GVFKC-QSGATQMRFQPRLGRILAAA 701 (725)
Q Consensus 632 ~l-~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg----~I~IwDl~t~~~v----~~~~~-~~~V~sv~fspdg~~Lla~s 701 (725)
.. ....+|...|.+++|+|++. ++++++.|+ .|++||+...... ..+.. ...|++++|+|+|.+|++|+
T Consensus 210 ~~~~~~~~~~~~v~~v~fspdg~-~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs 288 (365)
T 4h5i_A 210 IARKTDFDKNWSLSKINFIADDT-VLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS 288 (365)
T ss_dssp EEEECCCCTTEEEEEEEEEETTE-EEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE
T ss_pred eeeeecCCCCCCEEEEEEcCCCC-EEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc
Confidence 32 34457888999999999988 555666665 6888998876543 23333 56799999999999999999
Q ss_pred cCCeEEEEECCCCeEEEEE-eCCCC
Q 004885 702 IENYISILDVETQVCRLKL-QVSHS 725 (725)
Q Consensus 702 ~Dg~V~IwDl~tg~~v~~l-~GH~s 725 (725)
.|++|+|||+++++++.++ .||.+
T Consensus 289 ~D~~V~iwd~~~~~~~~~~~~gH~~ 313 (365)
T 4h5i_A 289 NDNSIALVKLKDLSMSKIFKQAHSF 313 (365)
T ss_dssp TTSCEEEEETTTTEEEEEETTSSSS
T ss_pred CCCEEEEEECCCCcEEEEecCcccC
Confidence 9999999999999999986 78964
No 91
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.92 E-value=1.1e-22 Score=214.24 Aligned_cols=207 Identities=25% Similarity=0.372 Sum_probs=176.6
Q ss_pred CCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCe
Q 004885 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV 558 (725)
Q Consensus 479 s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V 558 (725)
...+.++.|++++. ++++|+.|+.|++|..... ........+...+
T Consensus 86 ~~~V~~~~~s~dg~---------------~l~s~~~d~~i~~~~~~~~-------------------~~~~~~~~~~~~~ 131 (340)
T 4aow_A 86 SHFVSDVVISSDGQ---------------FALSGSWDGTLRLWDLTTG-------------------TTTRRFVGHTKDV 131 (340)
T ss_dssp SSCEEEEEECTTSS---------------EEEEEETTSEEEEEETTTT-------------------EEEEEEECCSSCE
T ss_pred CCCEEEEEECCCCC---------------EEEEEcccccceEEeeccc-------------------ceeeeecCCCCce
Confidence 44555666666554 9999999999999943222 3445566788889
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-EEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCeeeEE
Q 004885 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRT 635 (725)
Q Consensus 559 ~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~-i~~l~~H~~~V~~IafsPd--~~~Lasgs~DgtIrvWDl~~~~~~l~~ 635 (725)
.++.+++++++|++|+.|+.+++||+..... ...+.+|...|.+++|+++ ..++++++.|++|++||+++.. ++..
T Consensus 132 ~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-~~~~ 210 (340)
T 4aow_A 132 LSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-LKTN 210 (340)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE-EEEE
T ss_pred eEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc-eeeE
Confidence 9999999999999999999999999977544 3445789999999999986 4578999999999999999887 7888
Q ss_pred EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 004885 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV 715 (725)
Q Consensus 636 ~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~ 715 (725)
+.+|...|++|+|+|++. +|++|+.|+.|++||+++.+++..+.+...|.+++|+|++ ++++++.|+.|+|||++++.
T Consensus 211 ~~~h~~~v~~~~~s~~~~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~ 288 (340)
T 4aow_A 211 HIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNR-YWLCAATGPSIKIWDLEGKI 288 (340)
T ss_dssp ECCCSSCEEEEEECTTSS-EEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSS-SEEEEEETTEEEEEETTTTE
T ss_pred ecCCCCcEEEEEECCCCC-EEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCC-ceeeccCCCEEEEEECCCCe
Confidence 999999999999999988 7779999999999999999999999998899999999984 56778889999999999998
Q ss_pred EEEEEeC
Q 004885 716 CRLKLQV 722 (725)
Q Consensus 716 ~v~~l~G 722 (725)
++..+..
T Consensus 289 ~~~~~~~ 295 (340)
T 4aow_A 289 IVDELKQ 295 (340)
T ss_dssp EEEEECC
T ss_pred EEEeccc
Confidence 8887764
No 92
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.92 E-value=3.4e-24 Score=230.60 Aligned_cols=202 Identities=15% Similarity=0.110 Sum_probs=160.4
Q ss_pred CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (725)
Q Consensus 477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~ 556 (725)
.+...+.++.|++++. ++++|+.|+.|++|+..... .+.....+.+|..
T Consensus 53 ~h~~~v~~~~~s~~~~---------------~l~s~s~d~~v~vwd~~~~~----------------~~~~~~~~~~~~~ 101 (377)
T 3dwl_C 53 DHDKIVTCVDWAPKSN---------------RIVTCSQDRNAYVYEKRPDG----------------TWKQTLVLLRLNR 101 (377)
T ss_dssp CCSSCEEEEEECTTTC---------------CEEEEETTSSEEEC----------------------CCCCEEECCCCSS
T ss_pred cCCceEEEEEEeCCCC---------------EEEEEeCCCeEEEEEcCCCC----------------ceeeeeEecccCC
Confidence 3556778888888765 89999999999999553331 2334566788999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC---
Q 004885 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENP--- 629 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~---~i~~l~~-H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~--- 629 (725)
.|++++|+|++++|++|+.|+.|++||+++++ ....+.. |...|++++|+|++.+|++++.|++|++||++..
T Consensus 102 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 181 (377)
T 3dwl_C 102 AATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVD 181 (377)
T ss_dssp CEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC
T ss_pred ceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccC
Confidence 99999999999999999999999999998876 4677777 9999999999999999999999999999998632
Q ss_pred --------------CeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee----EEEEec-CCCeEEEEE
Q 004885 630 --------------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVFKC-QSGATQMRF 690 (725)
Q Consensus 630 --------------~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~----v~~~~~-~~~V~sv~f 690 (725)
..++..+ +|...|.+++|+|++. +|++++.|+.|++||++++.+ +..+.. ...|.+++|
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~ 259 (377)
T 3dwl_C 182 AKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN-ALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLW 259 (377)
T ss_dssp -CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS-CEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEE
T ss_pred CCccccccccccchhhhhhcc-cCCceEEEEEECCCCC-EEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEE
Confidence 1244555 8999999999999988 667899999999999999887 666665 567999999
Q ss_pred ecCCCEEEEEEcCCeEEEEECC
Q 004885 691 QPRLGRILAAAIENYISILDVE 712 (725)
Q Consensus 691 spdg~~Lla~s~Dg~V~IwDl~ 712 (725)
+|++.+|++++.|+ +.+|+..
T Consensus 260 s~~~~~l~~~~~~~-~~~~~~~ 280 (377)
T 3dwl_C 260 ANESAIVAAGYNYS-PILLQGN 280 (377)
T ss_dssp EETTEEEEEESSSS-EEEECCC
T ss_pred cCCCCEEEEEcCCc-EEEEEeC
Confidence 99987776665455 5577765
No 93
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.91 E-value=7.6e-23 Score=216.97 Aligned_cols=166 Identities=17% Similarity=0.250 Sum_probs=147.5
Q ss_pred EEEecCCCC--CeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004885 548 FQLIPASTS--KVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (725)
Q Consensus 548 ~~~l~~H~~--~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~-~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvW 624 (725)
+..+..|.+ .|.+++|+|++++|++++.|+.|++||+.+ ...+..+..|...|.+++|+|++.+|++++.|+.|++|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~ 245 (369)
T 3zwl_B 166 IHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLV 245 (369)
T ss_dssp SEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEE
Confidence 344556666 899999999999999999999999999998 78899999999999999999999999999999999999
Q ss_pred ECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC--------------cEEEEECCCCeeEEEEec-CCCeEEEE
Q 004885 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--------------EIRYWSINNGSCAGVFKC-QSGATQMR 689 (725)
Q Consensus 625 Dl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg--------------~I~IwDl~t~~~v~~~~~-~~~V~sv~ 689 (725)
|+++.. .+..+. +...+.+++|+|++.. +++++.++ .|++||+.+++++..+.. ...|++++
T Consensus 246 d~~~~~-~~~~~~-~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~ 322 (369)
T 3zwl_B 246 DVSTLQ-VLKKYE-TDCPLNTAVITPLKEF-IILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVA 322 (369)
T ss_dssp ETTTCC-EEEEEE-CSSCEEEEEECSSSSE-EEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred ECCCCc-eeeeec-CCCCceeEEecCCCce-EEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEE
Confidence 999887 566665 7788999999999985 45666566 899999999999998885 67899999
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCeE
Q 004885 690 FQPRLGRILAAAIENYISILDVETQVC 716 (725)
Q Consensus 690 fspdg~~Lla~s~Dg~V~IwDl~tg~~ 716 (725)
|+|++.+|++++.|+.|+|||++++..
T Consensus 323 ~s~~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 323 ISPQGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp ECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred ECCCCCEEEEEcCCCeEEEEECccccc
Confidence 999999999999999999999987543
No 94
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.91 E-value=7.7e-23 Score=233.36 Aligned_cols=215 Identities=16% Similarity=0.201 Sum_probs=185.5
Q ss_pred CCCC-eeEEEEec--CCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885 478 GASS-KSLLMFGS--DGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 554 (725)
Q Consensus 478 ~s~~-~s~l~fs~--dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H 554 (725)
+... +.++.|+| ++. ++++|+.|+.|++|....+. .........+..+..|
T Consensus 62 h~~~~v~~~~~sp~~~~~---------------~l~s~~~dg~v~vw~~~~~~-----------~~~~~~~~~~~~~~~~ 115 (615)
T 1pgu_A 62 HGSSVVTTVKFSPIKGSQ---------------YLCSGDESGKVIVWGWTFDK-----------ESNSVEVNVKSEFQVL 115 (615)
T ss_dssp TTTSCEEEEEECSSTTCC---------------EEEEEETTSEEEEEEEEEEG-----------GGTEEEEEEEEEEECC
T ss_pred CCCceEEEEEECcCCCCC---------------EEEEecCCCEEEEEeCCCCc-----------ccccccccccchhhcc
Confidence 4455 77778877 665 99999999999999542210 0001133566778899
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC----CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCC
Q 004885 555 TSKVESCHFSPDGKLLATGGHD----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENP 629 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~D----g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~-~Lasgs~DgtIrvWDl~~~ 629 (725)
...|.+++|+|++++|++++.| +.|++|| .++.+..+.+|...|++++|+|++. +|++++.|+.|++||+.+.
T Consensus 116 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~ 193 (615)
T 1pgu_A 116 AGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF 193 (615)
T ss_dssp SSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB
T ss_pred cccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc
Confidence 9999999999999999999988 6888887 5678889999999999999999987 8999999999999999987
Q ss_pred CeeeEEEecCCC---CeEEEEEccC-CCeEEEEEeCCCcEEEEECCCCeeEEEE-----ecCCCeEEEEEecCCCEEEEE
Q 004885 630 DYSLRTFTGHST---TVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNGSCAGVF-----KCQSGATQMRFQPRLGRILAA 700 (725)
Q Consensus 630 ~~~l~~~~~h~~---~V~sl~fsP~-g~~llaSgs~Dg~I~IwDl~t~~~v~~~-----~~~~~V~sv~fspdg~~Lla~ 700 (725)
. ++..+.+|.. .|.+++|+|+ +. ++++++.|+.|++||+++++++..+ .+...|.+++|+ ++.+|+++
T Consensus 194 ~-~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~ 270 (615)
T 1pgu_A 194 K-FSASDRTHHKQGSFVRDVEFSPDSGE-FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATV 270 (615)
T ss_dssp E-EEEEECSSSCTTCCEEEEEECSTTCC-EEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEE
T ss_pred c-eeeeecccCCCCceEEEEEECCCCCC-EEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEE
Confidence 7 7888999999 9999999999 77 6778999999999999999999998 557889999999 99999999
Q ss_pred EcCCeEEEEECCCCeEEEEEeCC
Q 004885 701 AIENYISILDVETQVCRLKLQVS 723 (725)
Q Consensus 701 s~Dg~V~IwDl~tg~~v~~l~GH 723 (725)
+.|+.|++||+++++++..+..|
T Consensus 271 ~~d~~i~~wd~~~~~~~~~~~~~ 293 (615)
T 1pgu_A 271 GADATIRVWDVTTSKCVQKWTLD 293 (615)
T ss_dssp ETTSEEEEEETTTTEEEEEEECC
T ss_pred cCCCcEEEEECCCCcEEEEEcCC
Confidence 99999999999999999999877
No 95
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.91 E-value=1.4e-22 Score=224.11 Aligned_cols=191 Identities=20% Similarity=0.403 Sum_probs=169.1
Q ss_pred cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004885 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (725)
Q Consensus 507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~ 586 (725)
.++++|+.|+.|++|+.. +.+.+..+.+|.+.|.+++| ++++|++|+.||+|+|||+.+
T Consensus 144 ~~l~~g~~dg~i~iwd~~-------------------~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 144 QKIVSGLRDNTIKIWDKN-------------------TLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp SEEEEEESSSCEEEEESS-------------------SCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred CEEEEEeCCCeEEEEeCC-------------------CCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence 389999999999999432 22456778899999999999 789999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee--eEEEecCCCCeEEEEEccCCCeEEEEEeCCCc
Q 004885 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (725)
Q Consensus 587 ~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~--l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~ 664 (725)
++.+..+.+|...|.+++|++ .+|++|+.|++|++||+.++... ...+.+|...|.+++| ++. ++++++.||.
T Consensus 203 ~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~s~~~dg~ 277 (435)
T 1p22_A 203 GEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDK-YIVSASGDRT 277 (435)
T ss_dssp CCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETT-EEEEEETTSE
T ss_pred CcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCC-EEEEEeCCCe
Confidence 999999999999999999974 59999999999999999987622 2677899999999999 444 7789999999
Q ss_pred EEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885 665 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS 725 (725)
Q Consensus 665 I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s 725 (725)
|++||+++++++..+.. ...|.++.|+ +.++++++.|+.|++||+++++++..+.+|.+
T Consensus 278 i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~ 337 (435)
T 1p22_A 278 IKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE 337 (435)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred EEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC
Confidence 99999999999999885 6779999995 57999999999999999999999999999963
No 96
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.91 E-value=3.6e-23 Score=216.35 Aligned_cols=165 Identities=17% Similarity=0.271 Sum_probs=143.4
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eEEEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEE
Q 004885 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVR 622 (725)
Q Consensus 549 ~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~----~~i~~l~~H~~~V~~IafsP--d~~~Lasgs~DgtIr 622 (725)
..+.+|.+.|++++|+|++++|++|+.|+.|+|||+.++ +.+..+.+|...|++++|+| ++.+|++++.|++|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 346799999999999999999999999999999999875 56778889999999999999 699999999999999
Q ss_pred EEECCCCC--------eeeEEEecCCCCeEEEEEccC--CCeEEEEEeCCCcEEEEECCCCee-----------------
Q 004885 623 VWDTENPD--------YSLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSC----------------- 675 (725)
Q Consensus 623 vWDl~~~~--------~~l~~~~~h~~~V~sl~fsP~--g~~llaSgs~Dg~I~IwDl~t~~~----------------- 675 (725)
+||++++. .++..+.+|...|.+++|+|+ +. ++++++.|+.|++||++++++
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99998763 357788899999999999999 76 677899999999999875432
Q ss_pred -------------------------------------------EEEEe-cCCCeEEEEEecCC----CEEEEEEcCCeEE
Q 004885 676 -------------------------------------------AGVFK-CQSGATQMRFQPRL----GRILAAAIENYIS 707 (725)
Q Consensus 676 -------------------------------------------v~~~~-~~~~V~sv~fspdg----~~Lla~s~Dg~V~ 707 (725)
+..+. +...|++++|+|++ .+|++++.|+.|+
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~ 243 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR 243 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence 22222 25679999999998 7899999999999
Q ss_pred EEECCCC
Q 004885 708 ILDVETQ 714 (725)
Q Consensus 708 IwDl~tg 714 (725)
|||++++
T Consensus 244 iwd~~~~ 250 (351)
T 3f3f_A 244 IFKITEK 250 (351)
T ss_dssp EEEEEEC
T ss_pred EEeCCCC
Confidence 9999875
No 97
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=5.3e-23 Score=228.79 Aligned_cols=171 Identities=12% Similarity=0.095 Sum_probs=151.0
Q ss_pred ecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECC--CCeEEEEec--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004885 551 IPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE--SFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (725)
Q Consensus 551 l~~H~~~V~~i~fSpdg~~L-aSgs~Dg~V~IWdl~--~~~~i~~l~--~H~~~V~~IafsPd~~~Lasgs~DgtIrvWD 625 (725)
..+|.+.|++++|+|++++| ++|+.|++|+|||+. +++.+..+. .|...|++++|+|++.+|++++.|+.|++|+
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~ 177 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID 177 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 45788899999999999986 899999999999999 888888776 5678999999999999999999999999999
Q ss_pred CCCCCe---eeEEEecCCCCeEEEEEccC---CCeEEEEEeCCCcEEEEECCCCeeEEEEe--cCCCeEEEEEecCCCEE
Q 004885 626 TENPDY---SLRTFTGHSTTVMSLDFHPS---KEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRI 697 (725)
Q Consensus 626 l~~~~~---~l~~~~~h~~~V~sl~fsP~---g~~llaSgs~Dg~I~IwDl~t~~~v~~~~--~~~~V~sv~fspdg~~L 697 (725)
+.+... ++..+.+|...|++|+|+|+ +. +|++++.|+.|+|||++++.++..+. +...|++++|+ ++.+|
T Consensus 178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l 255 (450)
T 2vdu_B 178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ-FIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLL 255 (450)
T ss_dssp TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCE-EEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEE
T ss_pred cCCcccccccceeeecccCceEEEEEcCCCCCCc-EEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEE
Confidence 987662 22377889999999999999 65 77899999999999999999887754 46789999999 99999
Q ss_pred EEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885 698 LAAAIENYISILDVETQVCRLKLQVS 723 (725)
Q Consensus 698 la~s~Dg~V~IwDl~tg~~v~~l~GH 723 (725)
++++.|+.|+|||+++++++..+..|
T Consensus 256 ~s~~~d~~v~vwd~~~~~~~~~~~~~ 281 (450)
T 2vdu_B 256 LSAGGDDKIFAWDWKTGKNLSTFDYN 281 (450)
T ss_dssp EEEESSSEEEEEETTTCCEEEEEECH
T ss_pred EEEeCCCeEEEEECCCCcEeeeecch
Confidence 99999999999999999999998754
No 98
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.91 E-value=1.3e-22 Score=218.61 Aligned_cols=210 Identities=22% Similarity=0.231 Sum_probs=167.4
Q ss_pred CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (725)
Q Consensus 478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (725)
+...+..+.|++++. .++++++.|+.|++|..... ..+..+ .+...
T Consensus 98 ~~~~v~~~~~~~~~~--------------~~l~s~~~d~~i~iwd~~~~-------------------~~~~~~-~~~~~ 143 (408)
T 4a11_B 98 HRYSVETVQWYPHDT--------------GMFTSSSFDKTLKVWDTNTL-------------------QTADVF-NFEET 143 (408)
T ss_dssp CSSCEEEEEECTTCT--------------TCEEEEETTSEEEEEETTTT-------------------EEEEEE-ECSSC
T ss_pred CCCcEEEEEEccCCC--------------cEEEEEeCCCeEEEeeCCCC-------------------ccceec-cCCCc
Confidence 556778888888332 37899999999999954322 223333 36778
Q ss_pred eEEEEEcCC---CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeee
Q 004885 558 VESCHFSPD---GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSL 633 (725)
Q Consensus 558 V~~i~fSpd---g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~-~Lasgs~DgtIrvWDl~~~~~~l 633 (725)
+.++.|++. +.+|++++.|+.|++||+++++.+..+.+|...|++++|+|++. +|++++.|+.|++||+++...++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~ 223 (408)
T 4a11_B 144 VYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCL 223 (408)
T ss_dssp EEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCS
T ss_pred eeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccc
Confidence 999999984 45999999999999999999999999999999999999999988 58999999999999998876555
Q ss_pred EEE---------------ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe------------------------
Q 004885 634 RTF---------------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS------------------------ 674 (725)
Q Consensus 634 ~~~---------------~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~------------------------ 674 (725)
..+ .+|...|.+++|+|++. +|++++.|+.|++||+++++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (408)
T 4a11_B 224 ITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL-HLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCG 302 (408)
T ss_dssp EECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCS
T ss_pred ccccccccccceeeccccccccCceeEEEEcCCCC-EEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecC
Confidence 555 57889999999999987 66788889999999987643
Q ss_pred -----------------------eEEEEe-cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885 675 -----------------------CAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQV 722 (725)
Q Consensus 675 -----------------------~v~~~~-~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~G 722 (725)
++..+. +...|++++|+|++.+|++++.||.|+|||+++++.+.....
T Consensus 303 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 374 (408)
T 4a11_B 303 CSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDE 374 (408)
T ss_dssp SSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---------
T ss_pred CCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCc
Confidence 344444 356799999999999999999999999999999987765543
No 99
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.1e-23 Score=248.37 Aligned_cols=208 Identities=15% Similarity=0.201 Sum_probs=177.9
Q ss_pred ccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885 475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 554 (725)
Q Consensus 475 ~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H 554 (725)
...+...+.++.|++++. ++++|+.|+.|++|... ..+...+..+.+|
T Consensus 5 l~gH~~~V~~l~~s~dg~---------------~latg~~dg~I~vwd~~-----------------~~~~~~~~~l~~h 52 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGK---------------RLATCSSDKTIKIFEVE-----------------GETHKLIDTLTGH 52 (753)
T ss_dssp ---CCCCEEEECCCSSSC---------------CEEEEETTTEEEEEEEE-----------------TTEEEEEEEECCC
T ss_pred cccCcceeEEEEECCCCC---------------eEEEEECCCcEEEEecC-----------------CCCCccceeccCC
Confidence 345667889999999876 88999999999999432 1244667788999
Q ss_pred CCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCe--EEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCC
Q 004885 555 TSKVESCHFSPD--GKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTEN 628 (725)
Q Consensus 555 ~~~V~~i~fSpd--g~~LaSgs~Dg~V~IWdl~~~~--~i~~l~~H~~~V~~IafsPd--~~~Lasgs~DgtIrvWDl~~ 628 (725)
.+.|++++|+++ +++|++|+.||+|++||+.+++ .+..+.+|...|++++|+|+ +.+|++|+.|++|++||+++
T Consensus 53 ~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~ 132 (753)
T 3jro_A 53 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE 132 (753)
T ss_dssp SSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCS
T ss_pred cCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeec
Confidence 999999999987 9999999999999999999886 77788899999999999998 99999999999999999988
Q ss_pred CC-eeeEEEecCCCCeEEEEEccC-------------CCeEEEEEeCCCcEEEEECCCC----eeEEEEec-CCCeEEEE
Q 004885 629 PD-YSLRTFTGHSTTVMSLDFHPS-------------KEDLLCSCDNNSEIRYWSINNG----SCAGVFKC-QSGATQMR 689 (725)
Q Consensus 629 ~~-~~l~~~~~h~~~V~sl~fsP~-------------g~~llaSgs~Dg~I~IwDl~t~----~~v~~~~~-~~~V~sv~ 689 (725)
.. .....+.+|...|.+++|+|. +. ++++|+.||.|++||++++ .++..+.. ...|++++
T Consensus 133 ~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~ 211 (753)
T 3jro_A 133 NGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA 211 (753)
T ss_dssp SSCCCCEEEECCSSCEEEEEECCCC---------CGGGC-CEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE
T ss_pred CCCcceeEeecCCCceEEEEecCcccccccccccCCCCC-EEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEE
Confidence 73 245667889999999999994 55 6779999999999999877 44555554 67899999
Q ss_pred EecC---CCEEEEEEcCCeEEEEECCCCe
Q 004885 690 FQPR---LGRILAAAIENYISILDVETQV 715 (725)
Q Consensus 690 fspd---g~~Lla~s~Dg~V~IwDl~tg~ 715 (725)
|+|+ +.+|++++.||.|+|||+++++
T Consensus 212 ~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 212 WSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp ECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred eccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 9999 8899999999999999998863
No 100
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.91 E-value=2.5e-22 Score=222.78 Aligned_cols=212 Identities=18% Similarity=0.271 Sum_probs=174.7
Q ss_pred CCcEEEEeeCCCcEEEecCCCCCCCCCcccc----ccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 004885 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGR----SAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (725)
Q Consensus 505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~ 580 (725)
...++++|+.|+.|++|.............. ............+..+.+|...|.++. +++++|++|+.|+.|+
T Consensus 216 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~~d~~i~ 293 (464)
T 3v7d_B 216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--GHGNIVVSGSYDNTLI 293 (464)
T ss_dssp SCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--EETTEEEEEETTSCEE
T ss_pred CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--CCCCEEEEEeCCCeEE
Confidence 3468999999999999977655322111000 000000111123567889999999884 5789999999999999
Q ss_pred EEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEe
Q 004885 581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (725)
Q Consensus 581 IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs 660 (725)
+||+.+++++..+.+|...|++++|+|++.+|++|+.|++|++||++++. ++..+.+|...|.+++|++ . ++++++
T Consensus 294 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~~--~-~l~s~s 369 (464)
T 3v7d_B 294 VWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE-LMYTLQGHTALVGLLRLSD--K-FLVSAA 369 (464)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECS--S-EEEEEE
T ss_pred EEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-EEEEEeCCCCcEEEEEEcC--C-EEEEEe
Confidence 99999999999999999999999999999999999999999999999987 7899999999999999984 3 788999
Q ss_pred CCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE-EeCC
Q 004885 661 NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK-LQVS 723 (725)
Q Consensus 661 ~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~-l~GH 723 (725)
.||.|++||++++.....+.+...+..++|++++.++++++ |+.|+|||++++++++. +.+|
T Consensus 370 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~ 432 (464)
T 3v7d_B 370 ADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKD 432 (464)
T ss_dssp TTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTT
T ss_pred CCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccC
Confidence 99999999999998888887778889999999998888877 99999999999999986 4444
No 101
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=9.3e-23 Score=218.38 Aligned_cols=227 Identities=7% Similarity=0.011 Sum_probs=167.7
Q ss_pred ccccCCCCCeeEEEEecCCCccc------cccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceee
Q 004885 473 TLQHNGASSKSLLMFGSDGMGSL------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFT 546 (725)
Q Consensus 473 ~l~~s~s~~~s~l~fs~dg~~~l------a~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~ 546 (725)
.+...++.+..+..|+......+ .+....+.+. +++|+.|+.|++|..... ...++.... .
T Consensus 49 ~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~-------~~~~~~~~~---~ 115 (343)
T 3lrv_A 49 WVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA---IISRGPCNRLLLLYPGNQ-------ITILDSKTN---K 115 (343)
T ss_dssp EEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS---EEEECSTTEEEEEETTTE-------EEEEETTTC---C
T ss_pred CEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc---eEEecCCCeEEEEEccCc-------eEEeecCCc---c
Confidence 44556667777777876543211 1111112222 788899999999954321 111222122 2
Q ss_pred eEEEe-cCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 004885 547 EFQLI-PASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVR 622 (725)
Q Consensus 547 ~~~~l-~~H~~~V~~i~fSp--dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~-~H~~~V~~IafsPd~~~Lasgs~DgtIr 622 (725)
.+..+ .+|.+.|.+++|+| ++++|++|+.|++|++||+++++.+..+. .|...|++++|+|++.+|++|+.|+.|+
T Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~ 195 (343)
T 3lrv_A 116 VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILD 195 (343)
T ss_dssp EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEE
T ss_pred eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 22222 37888999999999 99999999999999999999998877664 4556899999999999999999999999
Q ss_pred EEECCCCCeeeEEEec-CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec----CCCe--EEEEEecCCC
Q 004885 623 VWDTENPDYSLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGA--TQMRFQPRLG 695 (725)
Q Consensus 623 vWDl~~~~~~l~~~~~-h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~----~~~V--~sv~fspdg~ 695 (725)
+||++++......+.. |...|++|+|+|++. +|++++ |+.|++||+++++++..+.. ...+ .+++|+|++.
T Consensus 196 iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~-~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 273 (343)
T 3lrv_A 196 VYNLSSPDQASSRFPVDEEAKIKEVKFADNGY-WMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGK 273 (343)
T ss_dssp EEESSCTTSCCEECCCCTTSCEEEEEECTTSS-EEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSS
T ss_pred EEECCCCCCCccEEeccCCCCEEEEEEeCCCC-EEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCC
Confidence 9999998843377887 999999999999988 566777 55999999999877654432 1223 4699999999
Q ss_pred EEEEEEc-CCeEEEEECCCC
Q 004885 696 RILAAAI-ENYISILDVETQ 714 (725)
Q Consensus 696 ~Lla~s~-Dg~V~IwDl~tg 714 (725)
+|++++. |+.|+||++++.
T Consensus 274 ~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 274 NMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp EEEEEETTTTEEEEEEECTT
T ss_pred EEEEecCCCCcEEEEEEccc
Confidence 9999998 999999998654
No 102
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.1e-22 Score=231.28 Aligned_cols=216 Identities=11% Similarity=0.109 Sum_probs=163.5
Q ss_pred CCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCC--------------CCCCCccccccccCCCcee
Q 004885 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDD--------------ADPRDRVGRSAEVGKGFTF 545 (725)
Q Consensus 480 ~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~--------------~~~~~~~~~~~~~~~~~~~ 545 (725)
.-+..+.|+|||. ++++++.|++|+--..... .++.+.....|.....
T Consensus 16 ~~v~sv~~SpDG~---------------~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~--- 77 (588)
T 2j04_A 16 DWKNNLTWARDGT---------------LYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQN--- 77 (588)
T ss_dssp SSSCCEEECTTSC---------------EEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSS---
T ss_pred ccEEEEEECCCCC---------------EEEEEcCCceeecccccceecCCCccEEEEEECCCCCcceEEEEeCCCc---
Confidence 4567889999998 9999999999962111000 0111222222221111
Q ss_pred eeEEEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCC-----CeEEEEEcCCCCEEEEEeCCC
Q 004885 546 TEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-----WITDVRFSPSLSRLATSSADR 619 (725)
Q Consensus 546 ~~~~~l~-~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~-----~V~~IafsPd~~~Lasgs~Dg 619 (725)
..+. .|...|.+|+|||||++||+++.||.|+|||... ++..+. |.. .|.+++|+||+++|++|+.||
T Consensus 78 ---~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DG 151 (588)
T 2j04_A 78 ---GLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDG 151 (588)
T ss_dssp ---CSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTS
T ss_pred ---eEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCC
Confidence 1122 5678899999999999999999999999999654 666777 765 499999999999999999999
Q ss_pred eEEEEECCCCCe------eeEEE----ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee---EEEEe-c-CCC
Q 004885 620 TVRVWDTENPDY------SLRTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFK-C-QSG 684 (725)
Q Consensus 620 tIrvWDl~~~~~------~l~~~----~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~---v~~~~-~-~~~ 684 (725)
+|+|||+..+.. .+.++ .+|...|.+++|+|+| +++++.|++|++||+.++.. ..+++ + ...
T Consensus 152 tVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~ 228 (588)
T 2j04_A 152 ELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRK 228 (588)
T ss_dssp EEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSC
T ss_pred EEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCc
Confidence 999999998752 35666 6677899999999998 56777899999999998774 35564 3 567
Q ss_pred eEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885 685 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS 725 (725)
Q Consensus 685 V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s 725 (725)
|.+|+|+ +..|++++ +++|++||+.+++......||.+
T Consensus 229 V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~ 266 (588)
T 2j04_A 229 ITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLE 266 (588)
T ss_dssp CCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCS
T ss_pred EEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCc
Confidence 9999999 57777775 79999999999888544447753
No 103
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.91 E-value=4.6e-22 Score=220.20 Aligned_cols=190 Identities=21% Similarity=0.346 Sum_probs=168.9
Q ss_pred cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004885 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (725)
Q Consensus 507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~ 586 (725)
.++++|+.|+.|++|+... .+.+..+.+|.+.|.+++|+ +++|++|+.|++|++||+.+
T Consensus 130 ~~l~sg~~dg~i~vwd~~~-------------------~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~ 188 (445)
T 2ovr_B 130 NRIVSGSDDNTLKVWSAVT-------------------GKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAET 188 (445)
T ss_dssp TEEEEEETTSCEEEEETTT-------------------CCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT
T ss_pred CEEEEEECCCcEEEEECCC-------------------CcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCc
Confidence 3899999999999995432 24567788999999999997 67999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEE
Q 004885 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (725)
Q Consensus 587 ~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~ 666 (725)
++.+..+.+|...|.+++|+ +.+|++|+.|++|++||+.++. ++..+.+|...|.+++| ++. ++++++.|+.|+
T Consensus 189 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~i~ 262 (445)
T 2ovr_B 189 GECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQ-CLHVLMGHVAAVRCVQY--DGR-RVVSGAYDFMVK 262 (445)
T ss_dssp TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCC-EEEEEECCSSCEEEEEE--CSS-CEEEEETTSCEE
T ss_pred CcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCc-EEEEEcCCcccEEEEEE--CCC-EEEEEcCCCEEE
Confidence 99999999999999999996 5689999999999999999887 78889999999999999 444 677899999999
Q ss_pred EEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885 667 YWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS 725 (725)
Q Consensus 667 IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s 725 (725)
+||+++++++..+.. ...|.+++| ++.++++++.|+.|++||+++++++..+.+|.+
T Consensus 263 iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 320 (445)
T 2ovr_B 263 VWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS 320 (445)
T ss_dssp EEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS
T ss_pred EEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc
Confidence 999999999998875 677999999 678999999999999999999999999998863
No 104
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.91 E-value=8.7e-22 Score=216.97 Aligned_cols=196 Identities=17% Similarity=0.308 Sum_probs=165.9
Q ss_pred EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004885 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 587 (725)
Q Consensus 508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~ 587 (725)
+|++| .|++|++|+...+ ....+..+.+|...|+||+|+|+|++||+|+.|++|+|||+.++
T Consensus 118 ~lAvg-ld~tV~lWd~~tg-----------------~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~ 179 (420)
T 4gga_A 118 VLAVA-LDNSVYLWSASSG-----------------DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ 179 (420)
T ss_dssp EEEEE-ETTEEEEEETTTC-----------------CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred EEEEE-eCCEEEEEECCCC-----------------CEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC
Confidence 67766 5999999954333 12233455688899999999999999999999999999999999
Q ss_pred eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEE
Q 004885 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667 (725)
Q Consensus 588 ~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~I 667 (725)
+.+..+.+|...|.+++|+ +.+|++|+.|+.+++||.......+..+.+|...+..+.|+|++. ++++++.|+.|+|
T Consensus 180 ~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~-~l~s~~~D~~v~i 256 (420)
T 4gga_A 180 KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNV 256 (420)
T ss_dssp EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEE
T ss_pred cEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCC-eeeeeeccccceE
Confidence 9999999999999999885 579999999999999999988778889999999999999999988 6779999999999
Q ss_pred EECCCCee----EEEEe-cCCCeEEEEEecCCCEEE-EE--EcCCeEEEEECCCCeEEEEEeCCC
Q 004885 668 WSINNGSC----AGVFK-CQSGATQMRFQPRLGRIL-AA--AIENYISILDVETQVCRLKLQVSH 724 (725)
Q Consensus 668 wDl~t~~~----v~~~~-~~~~V~sv~fspdg~~Ll-a~--s~Dg~V~IwDl~tg~~v~~l~GH~ 724 (725)
||+.+++. +..+. +...|.+++|+|++..++ ++ +.|++|+|||+++++++..+..|.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~ 321 (420)
T 4gga_A 257 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS 321 (420)
T ss_dssp EESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS
T ss_pred EeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc
Confidence 99987653 23333 467899999999876554 33 358999999999999999998774
No 105
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.91 E-value=3.9e-23 Score=229.08 Aligned_cols=198 Identities=20% Similarity=0.211 Sum_probs=157.8
Q ss_pred cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004885 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (725)
Q Consensus 507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~ 586 (725)
.+|++|+.|++|++|+... .....+.....+...|.+++|+|++++|++|+.||.|++||++.
T Consensus 178 ~~l~s~s~D~~v~iwd~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~ 240 (435)
T 4e54_B 178 NQFYASSMEGTTRLQDFKG-----------------NILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG 240 (435)
T ss_dssp TEEEEECSSSCEEEEETTS-----------------CEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS
T ss_pred CEEEEEeCCCEEEEeeccC-----------------CceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc
Confidence 4899999999999995421 12222333344556789999999999999999999999999864
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCe--eeEEEecCCCCeEEEEEccCCCeEEEEEeCCC
Q 004885 587 FTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (725)
Q Consensus 587 ~~~i~~l~~H~~~V~~IafsPd~~-~Lasgs~DgtIrvWDl~~~~~--~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg 663 (725)
+.+..+.+|...|++|+|+|++. +|++|+.|++|+|||+++... .+....+|...|++|+|+|++. +|++++.|+
T Consensus 241 -~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~l~s~~~D~ 318 (435)
T 4e54_B 241 -KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA-RLLTTDQKS 318 (435)
T ss_dssp -CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSS-EEEEEESSS
T ss_pred -ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCC-eeEEEcCCC
Confidence 56678889999999999999865 788999999999999987652 2233467999999999999988 667999999
Q ss_pred cEEEEECCCCeeEEEEecC-------CCeEEEEEecCCCEEEEEEc------------CCeEEEEECCCCeEEEEEeCC
Q 004885 664 EIRYWSINNGSCAGVFKCQ-------SGATQMRFQPRLGRILAAAI------------ENYISILDVETQVCRLKLQVS 723 (725)
Q Consensus 664 ~I~IwDl~t~~~v~~~~~~-------~~V~sv~fspdg~~Lla~s~------------Dg~V~IwDl~tg~~v~~l~GH 723 (725)
.|+|||++++.+...+..+ ..+..+.|+|++..++++.. ++.|+|||+.+++++..+.++
T Consensus 319 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~ 397 (435)
T 4e54_B 319 EIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP 397 (435)
T ss_dssp CEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS
T ss_pred EEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC
Confidence 9999999998887766531 12455678888777766643 357999999999999988643
No 106
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.90 E-value=9.9e-23 Score=218.79 Aligned_cols=162 Identities=10% Similarity=0.097 Sum_probs=132.7
Q ss_pred eeEEEecCCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEECCCCeEEEEeccCC---CCeEEEEEcCCCCEE-------
Q 004885 546 TEFQLIPASTSKVESCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT---QWITDVRFSPSLSRL------- 612 (725)
Q Consensus 546 ~~~~~l~~H~~~V~~i~fSp---dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~---~~V~~IafsPd~~~L------- 612 (725)
+.+..+.+|...|+.++|++ ++.+|++|+.|++|+|||++++++++++.+|. ..|.+++|+|++.++
T Consensus 169 ~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~ 248 (356)
T 2w18_A 169 GGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPC 248 (356)
T ss_dssp CEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC---
T ss_pred ceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCC
Confidence 34556778999999999999 77999999999999999999999999998754 467888999999876
Q ss_pred -----EEEeCCCeEEEEECCCCCeeeEEE-----ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-
Q 004885 613 -----ATSSADRTVRVWDTENPDYSLRTF-----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC- 681 (725)
Q Consensus 613 -----asgs~DgtIrvWDl~~~~~~l~~~-----~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~- 681 (725)
++|+.|++|++||..++. ++..+ .+|...+.+.+++ +. ++++++.|++|+|||+.+++++.++++
T Consensus 249 ~~w~laSGs~D~tIklWd~~tgk-~l~v~~~~~p~Gh~~~~lsg~~s--g~-~lASgS~DgTIkIWDl~tGk~l~tL~gH 324 (356)
T 2w18_A 249 AKESESLRSPVFQLIVINPKTTL-SVGVMLYCLPPGQAGRFLEGDVK--DH-CAAAILTSGTIAIWDLLLGQCTALLPPV 324 (356)
T ss_dssp ---------CCEEEEEEETTTTE-EEEEEEECCCTTCCCCEEEEEEE--TT-EEEEEETTSCEEEEETTTCSEEEEECCC
T ss_pred CcceeeccCCCcEEEEEECCCCE-EEEEEEeeccCCCcceeEccccC--CC-EEEEEcCCCcEEEEECCCCcEEEEecCC
Confidence 567889999999999876 55544 3666665555554 44 788999999999999999999999985
Q ss_pred CCC-eEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004885 682 QSG-ATQMRFQPRLGRILAAAIENYISILDV 711 (725)
Q Consensus 682 ~~~-V~sv~fspdg~~Lla~s~Dg~V~IwDl 711 (725)
... +..++|+|||.+|++|+.|++|+|||+
T Consensus 325 ~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 325 SDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp --CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 334 446899999999999999999999996
No 107
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.90 E-value=2.5e-23 Score=228.16 Aligned_cols=207 Identities=10% Similarity=0.065 Sum_probs=151.3
Q ss_pred CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC--------CCCEEEEEe
Q 004885 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--------DGKLLATGG 574 (725)
Q Consensus 503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp--------dg~~LaSgs 574 (725)
.....++++|+.|++|++|+...+ .......+..+.+|.+.|.+++|+| |+++||+|+
T Consensus 98 ~~~~~~las~~~d~~v~lw~~~~~--------------~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s 163 (393)
T 4gq1_A 98 PVYSLFLACVCQDNTVRLIITKNE--------------TIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG 163 (393)
T ss_dssp CEEEEEEEEEETTSCEEEEEEETT--------------EEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred CCCCCEEEEEeCCCcEEEEECCCC--------------ccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE
Confidence 344568999999999999954332 1122234556789999999999998 889999999
Q ss_pred CCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCeee--------------------
Q 004885 575 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSL-------------------- 633 (725)
Q Consensus 575 ~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~-~~Lasgs~DgtIrvWDl~~~~~~l-------------------- 633 (725)
.|++|+|||+.++..+..+..|...|.+++|+|++ .+|++++.|++|++||++++....
T Consensus 164 ~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~ 243 (393)
T 4gq1_A 164 DDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP 243 (393)
T ss_dssp TTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGG
T ss_pred CCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccc
Confidence 99999999999988888888999999999999986 579999999999999998765211
Q ss_pred ----EEEecCCCCeEEEEEc-cCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-C------------------CCeEEEE
Q 004885 634 ----RTFTGHSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-Q------------------SGATQMR 689 (725)
Q Consensus 634 ----~~~~~h~~~V~sl~fs-P~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~------------------~~V~sv~ 689 (725)
....+|...|.++.|+ |++. .+++++.|++|++||+..+.....+.. . ..+..++
T Consensus 244 ~~~~~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (393)
T 4gq1_A 244 LVNTCHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGAC 322 (393)
T ss_dssp GC------CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCE
T ss_pred ceeeeecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEE
Confidence 1124677889999997 6766 677999999999999987765544432 1 1122234
Q ss_pred Eec-CCCE-EEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885 690 FQP-RLGR-ILAAAIENYISILDVETQVCRLKLQVSH 724 (725)
Q Consensus 690 fsp-dg~~-Lla~s~Dg~V~IwDl~tg~~v~~l~GH~ 724 (725)
|+| .++. +++++.|+.|+|||+.+++++..+.+|.
T Consensus 323 ~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~ 359 (393)
T 4gq1_A 323 PHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG 359 (393)
T ss_dssp ECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECS
T ss_pred EccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCC
Confidence 443 3344 4455669999999999998888877775
No 108
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.90 E-value=4.1e-22 Score=220.37 Aligned_cols=192 Identities=24% Similarity=0.405 Sum_probs=168.8
Q ss_pred CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (725)
Q Consensus 505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl 584 (725)
.+.++++|+.|+.|++|+...+ +.+..+.+|...|.+++|+ +.+|++|+.|+.|++||+
T Consensus 182 ~~~~l~sg~~dg~i~vwd~~~~-------------------~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~ 240 (435)
T 1p22_A 182 DERVIITGSSDSTVRVWDVNTG-------------------EMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDM 240 (435)
T ss_dssp CSSEEEEEETTSCEEEEESSSC-------------------CEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEEC
T ss_pred CCCEEEEEcCCCeEEEEECCCC-------------------cEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeC
Confidence 3458999999999999954332 4567788999999999996 469999999999999999
Q ss_pred CCCeEE---EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeC
Q 004885 585 ESFTVK---STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (725)
Q Consensus 585 ~~~~~i---~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~ 661 (725)
.++..+ ..+.+|...|.+++| ++.+|++|+.|++|++||++++. ++..+.+|...|.++.|++ . ++++|+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~--~-~l~~g~~ 314 (435)
T 1p22_A 241 ASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCE-FVRTLNGHKRGIACLQYRD--R-LVVSGSS 314 (435)
T ss_dssp SSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEEET--T-EEEEEET
T ss_pred CCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCc-EEEEEcCCCCcEEEEEeCC--C-EEEEEeC
Confidence 876654 678899999999999 67899999999999999999987 7899999999999999953 3 7889999
Q ss_pred CCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe---------EEEEEeCCCC
Q 004885 662 NSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQV---------CRLKLQVSHS 725 (725)
Q Consensus 662 Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~---------~v~~l~GH~s 725 (725)
||.|++||+++++++..+.. ...|.+++| ++.+|++++.||.|+|||+++++ ++..+.+|.+
T Consensus 315 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~ 386 (435)
T 1p22_A 315 DNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG 386 (435)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS
T ss_pred CCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCC
Confidence 99999999999999999885 677999999 67899999999999999998776 9999999964
No 109
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.90 E-value=2.6e-21 Score=201.80 Aligned_cols=202 Identities=19% Similarity=0.343 Sum_probs=173.3
Q ss_pred CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004885 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (725)
Q Consensus 503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IW 582 (725)
...++++++|+.|+.|++|.... .+.+..+.+|...+.++.+ ++.+|++++.++.+++|
T Consensus 76 ~~~~~~l~sgs~Dg~v~iw~~~~-------------------~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~ 134 (318)
T 4ggc_A 76 IKEGNYLAVGTSSAEVQLWDVQQ-------------------QKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHH 134 (318)
T ss_dssp CTTSSEEEEEETTSEEEEEETTT-------------------TEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEE
T ss_pred CCCCCEEEEEECCCcEEEeecCC-------------------ceeEEEecCccceEEEeec--CCCEEEEEecCCceEee
Confidence 34445999999999999994432 2566778899999888776 56899999999999999
Q ss_pred ECCCC-eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe---eeEEEecCCCCeEEEEEccCCCeEEE-
Q 004885 583 CTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLC- 657 (725)
Q Consensus 583 dl~~~-~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~---~l~~~~~h~~~V~sl~fsP~g~~lla- 657 (725)
+.... ..+..+.+|...+.++.|++++.+|++++.|++|++||++++.. .......|.+.|.++.++|.+..+++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 214 (318)
T 4ggc_A 135 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLAT 214 (318)
T ss_dssp ETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEE
T ss_pred ecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEE
Confidence 98764 56778899999999999999999999999999999999987642 34566678889999999999877664
Q ss_pred -EEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEE--cCCeEEEEECCCCeEEEEEeCCCC
Q 004885 658 -SCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--IENYISILDVETQVCRLKLQVSHS 725 (725)
Q Consensus 658 -Sgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s--~Dg~V~IwDl~tg~~v~~l~GH~s 725 (725)
+++.++.|++||.+.........+...+..++|+|++..+++++ .|+.|+|||+++++++.+|.||.+
T Consensus 215 ~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~ 285 (318)
T 4ggc_A 215 GGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS 285 (318)
T ss_dssp EECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS
T ss_pred EecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCC
Confidence 45578899999999999988888888999999999999988876 589999999999999999999974
No 110
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=7.4e-23 Score=219.13 Aligned_cols=191 Identities=12% Similarity=0.082 Sum_probs=153.7
Q ss_pred CCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004885 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (725)
Q Consensus 504 ~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWd 583 (725)
....++++|+.|+.|++|+...+. .+..+. ...|.++.|+|+ +++++.|++|++|+
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~~-------------------~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~ 101 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDSK-------------------TITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLY 101 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSSS-------------------CEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEE
T ss_pred CCCCEEEEECCCCcEEEEECCCCc-------------------EEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEE
Confidence 345689999999999999654331 111221 355888889887 99999999999997
Q ss_pred CC---------CCeEEEEec-cCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCeeeEEE-ecCCCCeEEEEEcc
Q 004885 584 TE---------SFTVKSTLE-EHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHP 650 (725)
Q Consensus 584 l~---------~~~~i~~l~-~H~~~V~~IafsP--d~~~Lasgs~DgtIrvWDl~~~~~~l~~~-~~h~~~V~sl~fsP 650 (725)
.. +...+..+. +|...|.+++|+| ++.+|++++.|++|++||++++. ++..+ ..|...|.+++|+|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~~i~~~~~~p 180 (343)
T 3lrv_A 102 PGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS-QYIVHSAKSDVEYSSGVLHK 180 (343)
T ss_dssp TTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC-EEEEECCCSSCCCCEEEECT
T ss_pred ccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc-EEEEEecCCCCceEEEEECC
Confidence 65 444444443 6778999999999 99999999999999999999887 45555 34566899999999
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCeeE-EEEec--CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 651 SKEDLLCSCDNNSEIRYWSINNGSCA-GVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 651 ~g~~llaSgs~Dg~I~IwDl~t~~~v-~~~~~--~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
++. +|++|+.||.|+|||+++++++ ..+.. ...|++++|+|++.+|++++ |+.|+|||+++++++..+.
T Consensus 181 dg~-~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~ 252 (343)
T 3lrv_A 181 DSL-LLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYP 252 (343)
T ss_dssp TSC-EEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSC
T ss_pred CCC-EEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeec
Confidence 987 7889999999999999999887 66664 67899999999999999988 5599999999987665544
No 111
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.89 E-value=5e-21 Score=211.89 Aligned_cols=186 Identities=23% Similarity=0.441 Sum_probs=166.3
Q ss_pred CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004885 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (725)
Q Consensus 506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~ 585 (725)
...+++|+.|+.|++|+...+ +.+..+.+|...|.+++| ++++|++|+.|+.|++||++
T Consensus 209 ~~~l~s~s~dg~i~~wd~~~~-------------------~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~ 267 (445)
T 2ovr_B 209 EKRVVSGSRDATLRVWDIETG-------------------QCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPE 267 (445)
T ss_dssp TTEEEEEETTSEEEEEESSSC-------------------CEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGG
T ss_pred CCEEEEEeCCCEEEEEECCCC-------------------cEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECC
Confidence 457899999999999954322 456677899999999999 78899999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcE
Q 004885 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (725)
Q Consensus 586 ~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I 665 (725)
+++.+..+.+|...|.+++| ++.+|++++.|++|++||++++. ++..+.+|...+.++.+++ . ++++++.||.|
T Consensus 268 ~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~--~-~l~~~~~dg~i 341 (445)
T 2ovr_B 268 TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGN-CIHTLTGHQSLTSGMELKD--N-ILVSGNADSTV 341 (445)
T ss_dssp GTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCC-EEEEECCCCSCEEEEEEET--T-EEEEEETTSCE
T ss_pred CCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCC-EEEEEcCCcccEEEEEEeC--C-EEEEEeCCCeE
Confidence 99999999999999999999 78899999999999999999988 7889999999999998864 3 78899999999
Q ss_pred EEEECCCCeeEEEEe----cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 004885 666 RYWSINNGSCAGVFK----CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 720 (725)
Q Consensus 666 ~IwDl~t~~~v~~~~----~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l 720 (725)
++||+++++++..+. +...|++++|+ +.+|++++.||.|+|||+++++.+..+
T Consensus 342 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 342 KIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp EEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeee
Confidence 999999999999887 35679999996 479999999999999999999999888
No 112
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=4e-22 Score=237.29 Aligned_cols=207 Identities=15% Similarity=0.217 Sum_probs=170.6
Q ss_pred CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (725)
Q Consensus 478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (725)
+...+.++.|+++. ...++++|+.|+.|++|.... .....+..+.+|...
T Consensus 52 h~~~V~~l~~s~~~-------------~~~~l~s~s~Dg~I~vwd~~~-----------------~~~~~~~~~~~h~~~ 101 (753)
T 3jro_A 52 HEGPVWRVDWAHPK-------------FGTILASCSYDGKVLIWKEEN-----------------GRWSQIAVHAVHSAS 101 (753)
T ss_dssp CSSCEEEEEECCTT-------------SCSEEEEEETTSCEEEEEEET-----------------TEEEEEEEECCCSSC
T ss_pred CcCceEEEEecCCC-------------CCCEEEEEeCCCeEEEEECCC-----------------CcccccccccCCCCC
Confidence 44556666666641 134899999999999995322 223466778899999
Q ss_pred eEEEEEcCC--CCEEEEEeCCCcEEEEECCCC--eEEEEeccCCCCeEEEEEcC-------------CCCEEEEEeCCCe
Q 004885 558 VESCHFSPD--GKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSP-------------SLSRLATSSADRT 620 (725)
Q Consensus 558 V~~i~fSpd--g~~LaSgs~Dg~V~IWdl~~~--~~i~~l~~H~~~V~~IafsP-------------d~~~Lasgs~Dgt 620 (725)
|++++|+|+ +++|++|+.||+|++||+++. .....+.+|...|++++|+| ++.+|++|+.||+
T Consensus 102 V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~ 181 (753)
T 3jro_A 102 VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 181 (753)
T ss_dssp EEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSC
T ss_pred eEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCe
Confidence 999999999 999999999999999999876 34456788999999999999 5899999999999
Q ss_pred EEEEECCCCC---eeeEEEecCCCCeEEEEEccCC--CeEEEEEeCCCcEEEEECCCCee-----EE-EEecCCCeEEEE
Q 004885 621 VRVWDTENPD---YSLRTFTGHSTTVMSLDFHPSK--EDLLCSCDNNSEIRYWSINNGSC-----AG-VFKCQSGATQMR 689 (725)
Q Consensus 621 IrvWDl~~~~---~~l~~~~~h~~~V~sl~fsP~g--~~llaSgs~Dg~I~IwDl~t~~~-----v~-~~~~~~~V~sv~ 689 (725)
|++||++++. .++..+.+|...|++++|+|++ ..++++++.||.|++||++++.. +. ...+...|++++
T Consensus 182 I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~ 261 (753)
T 3jro_A 182 VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRAS 261 (753)
T ss_dssp EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEE
T ss_pred EEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEE
Confidence 9999998764 3567788999999999999994 44788999999999999998642 11 112357799999
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCC
Q 004885 690 FQPRLGRILAAAIENYISILDVETQ 714 (725)
Q Consensus 690 fspdg~~Lla~s~Dg~V~IwDl~tg 714 (725)
|+|++.+|++++.||.|+|||++++
T Consensus 262 ~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 262 WSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp ECTTTCCEEEECSSSCEECCBCCSS
T ss_pred EcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9999999999999999999999853
No 113
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.89 E-value=2.3e-21 Score=209.51 Aligned_cols=198 Identities=9% Similarity=0.149 Sum_probs=157.2
Q ss_pred CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (725)
Q Consensus 478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (725)
+...+.++.|++++. ++++|+.| .+++|.... ...+.... ...
T Consensus 18 h~~~V~~v~fs~dg~---------------~la~g~~~-~~~iw~~~~-------------------~~~~~~~~--~~~ 60 (355)
T 3vu4_A 18 VSNPVTDYEFNQDQS---------------CLILSTLK-SFEIYNVHP-------------------VAHIMSQE--MRH 60 (355)
T ss_dssp -CCCCCEEEECTTSS---------------EEEEECSS-EEEEEEETT-------------------EEEEEEEE--CSC
T ss_pred CCCceEEEEECCCCC---------------EEEEEcCC-EEEEEecCC-------------------cceeeeee--cCC
Confidence 456788999999887 88888766 578994321 12222221 124
Q ss_pred eEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCC---------------------------
Q 004885 558 VESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL--------------------------- 609 (725)
Q Consensus 558 V~~i~fSpdg~~L-aSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~--------------------------- 609 (725)
+..++|.++++.+ ++++.|++|+|||+.+++.+..+. |...|.+++|+++.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~ 139 (355)
T 3vu4_A 61 LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRF 139 (355)
T ss_dssp CCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEE
T ss_pred eEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccC
Confidence 8889999988877 567788999999999999988886 66789999888753
Q ss_pred --------CEEEE--EeCCCeEEEEECCCCC--------------ee-eEEEecCCCCeEEEEEccCCCeEEEEEeCCCc
Q 004885 610 --------SRLAT--SSADRTVRVWDTENPD--------------YS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (725)
Q Consensus 610 --------~~Las--gs~DgtIrvWDl~~~~--------------~~-l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~ 664 (725)
.++++ |+.||.|++||+.++. .+ +..+.+|...|++++|+|++. +|++|+.|++
T Consensus 140 ~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~-~l~s~s~d~~ 218 (355)
T 3vu4_A 140 GGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD-MVATCSQDGT 218 (355)
T ss_dssp EEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSS-EEEEEETTCS
T ss_pred CceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC-EEEEEeCCCC
Confidence 23333 4678888888887643 11 678899999999999999987 7789999998
Q ss_pred -EEEEECCCCeeEEEEe---cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885 665 -IRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIENYISILDVETQ 714 (725)
Q Consensus 665 -I~IwDl~t~~~v~~~~---~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg 714 (725)
|+|||+++++++..+. +...|++++|+|++.+|++++.|++|+|||++.+
T Consensus 219 ~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 219 IIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 9999999999999998 5778999999999999999999999999999865
No 114
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=8.7e-22 Score=239.13 Aligned_cols=207 Identities=13% Similarity=0.111 Sum_probs=163.3
Q ss_pred ccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEe-----cCCCCCeEEEEEcCCCCEEEEEeC
Q 004885 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-----PASTSKVESCHFSPDGKLLATGGH 575 (725)
Q Consensus 501 ~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~H~~~V~~i~fSpdg~~LaSgs~ 575 (725)
.+.+..+++++|+.|++|++|+...+.... ...+. ..+ .+|...|++|+|+||+++||+|+.
T Consensus 442 ~~spdg~~laSgs~DgtVrlWd~~~g~~~~-----------~~~~~--~~l~~~~~~~h~~~V~svafspdg~~LAsgs~ 508 (902)
T 2oaj_A 442 LPAEYGTAFITGHSNGSVRIYDASHGDIQD-----------NASFE--VNLSRTLNKAKELAVDKISFAAETLELAVSIE 508 (902)
T ss_dssp CCCSEEEEEEEEETTSEEEEEESSCCTTTT-----------TBCEE--EEHHHHTTCSSSCCEEEEEEETTTTEEEEEET
T ss_pred cccccCcEEEEecCCCcEEEEECCCccccC-----------CceEE--eechhhcCCCCCCceeEEEecCCCCeEEEEec
Confidence 344556799999999999999776542100 00000 011 289999999999999999999999
Q ss_pred CCcEEEEECCCC---------------------------------------------eEEEEeccCCCCeEEEEEcCCCC
Q 004885 576 DKKAVLWCTESF---------------------------------------------TVKSTLEEHTQWITDVRFSPSLS 610 (725)
Q Consensus 576 Dg~V~IWdl~~~---------------------------------------------~~i~~l~~H~~~V~~IafsPd~~ 610 (725)
|++|+|||+.++ .++.++.+|.+.|++|+|+|+|
T Consensus 509 DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG- 587 (902)
T 2oaj_A 509 TGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG- 587 (902)
T ss_dssp TSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-
T ss_pred CcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-
Confidence 999999999765 2467888999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeE-----EEe-cCCCCeEEEEEc-----cCC--CeEEEEEeCCCcEEEEEC---CCCe
Q 004885 611 RLATSSADRTVRVWDTENPDYSLR-----TFT-GHSTTVMSLDFH-----PSK--EDLLCSCDNNSEIRYWSI---NNGS 674 (725)
Q Consensus 611 ~Lasgs~DgtIrvWDl~~~~~~l~-----~~~-~h~~~V~sl~fs-----P~g--~~llaSgs~Dg~I~IwDl---~t~~ 674 (725)
+|++|+.|++|+|||++++. .+. .+. +|.+.|++|+|+ ||| ..+|++++.|++|++||+ .+|+
T Consensus 588 ~lAsgs~D~tv~lwd~~~~~-~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~ 666 (902)
T 2oaj_A 588 FVGIAYAAGSLMLIDRRGPA-IIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGK 666 (902)
T ss_dssp EEEEEETTSEEEEEETTTTE-EEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGC
T ss_pred EEEEEeCCCcEEEEECCCCe-EEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCc
Confidence 99999999999999998765 332 233 889999999999 886 357889999999999999 7888
Q ss_pred eEEEEec------CCCeEEEE-Ee----------------------cCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885 675 CAGVFKC------QSGATQMR-FQ----------------------PRLGRILAAAIENYISILDVETQVCRLKLQVSH 724 (725)
Q Consensus 675 ~v~~~~~------~~~V~sv~-fs----------------------pdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~ 724 (725)
++..+.. ...|.+++ |+ ++ .+++++ .+..|+||++.++++++.+.+|.
T Consensus 667 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~-~~~l~~-~~~~ir~~~~~~~k~~~k~~~~~ 743 (902)
T 2oaj_A 667 FDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIP-GIVLIT-GFDDIRLITLGKSKSTHKGFKYP 743 (902)
T ss_dssp EEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCC-EEEEEE-CSSEEEEECTTCCCEEEEECSSC
T ss_pred EEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCC-eEEEEE-eccceEEEeCccccceeeEcccc
Confidence 8877754 35677776 66 33 334444 48899999999999998887663
No 115
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.88 E-value=1.9e-20 Score=202.23 Aligned_cols=207 Identities=17% Similarity=0.203 Sum_probs=171.4
Q ss_pred CeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEE
Q 004885 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560 (725)
Q Consensus 481 ~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~ 560 (725)
.+..+.|++++. .++++++.|+.|++|+...+ +.+..+..|. .|.+
T Consensus 33 ~~~~~~~s~dg~--------------~l~~~~~~d~~i~v~d~~~~-------------------~~~~~~~~~~-~v~~ 78 (391)
T 1l0q_A 33 NPMGAVISPDGT--------------KVYVANAHSNDVSIIDTATN-------------------NVIATVPAGS-SPQG 78 (391)
T ss_dssp SEEEEEECTTSS--------------EEEEEEGGGTEEEEEETTTT-------------------EEEEEEECSS-SEEE
T ss_pred CcceEEECCCCC--------------EEEEECCCCCeEEEEECCCC-------------------eEEEEEECCC-Cccc
Confidence 456777777665 24477889999999954222 3344454444 8999
Q ss_pred EEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCeeeEEEec
Q 004885 561 CHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTG 638 (725)
Q Consensus 561 i~fSpdg~~LaSg-s~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~L-asgs~DgtIrvWDl~~~~~~l~~~~~ 638 (725)
++|+|++++|+++ +.|+.|++||+.+++.+..+..| ..+.+++|+|++++| ++++.|+.|++||+.++. .+..+..
T Consensus 79 ~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~~~ 156 (391)
T 1l0q_A 79 VAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA-VINTVSV 156 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEEC
T ss_pred eEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc-EEEEEec
Confidence 9999999987654 56799999999999988888754 568999999999977 677889999999999877 5666665
Q ss_pred CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEE---cCCeEEEEECCCCe
Q 004885 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA---IENYISILDVETQV 715 (725)
Q Consensus 639 h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s---~Dg~V~IwDl~tg~ 715 (725)
+ ..+.+++|+|+++.++++++.++.|++||+++++++..+.+...+.+++|+|++.+|++++ .++.|++||+++++
T Consensus 157 ~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~ 235 (391)
T 1l0q_A 157 G-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK 235 (391)
T ss_dssp C-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred C-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe
Confidence 5 4579999999999887888889999999999999999988888899999999999999888 68999999999999
Q ss_pred EEEEEeCCC
Q 004885 716 CRLKLQVSH 724 (725)
Q Consensus 716 ~v~~l~GH~ 724 (725)
++..+..|.
T Consensus 236 ~~~~~~~~~ 244 (391)
T 1l0q_A 236 ITARIPVGP 244 (391)
T ss_dssp EEEEEECCS
T ss_pred EEEEEecCC
Confidence 999998774
No 116
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.6e-21 Score=219.95 Aligned_cols=190 Identities=11% Similarity=0.109 Sum_probs=159.1
Q ss_pred CCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC--
Q 004885 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS-- 556 (725)
Q Consensus 479 s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~-- 556 (725)
...+.+++|+|+|. .+++++.|+.|++|.. .. .+..+. |..
T Consensus 85 ~~~V~~vawSPdG~---------------~LAs~s~dg~V~iwd~-------------------~~--~l~~l~-~~~~~ 127 (588)
T 2j04_A 85 VCYPRVCKPSPIDD---------------WMAVLSNNGNVSVFKD-------------------NK--MLTNLD-SKGNL 127 (588)
T ss_dssp SCCEEEEEECSSSS---------------CEEEEETTSCEEEEET-------------------TE--EEEECC-CSSCS
T ss_pred CCcEEEEEECCCCC---------------EEEEEeCCCcEEEEeC-------------------Cc--eeeecc-CCCcc
Confidence 56799999999998 8999999999999931 11 444455 555
Q ss_pred ---CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-------EEEEe----ccCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 004885 557 ---KVESCHFSPDGKLLATGGHDKKAVLWCTESFT-------VKSTL----EEHTQWITDVRFSPSLSRLATSSADRTVR 622 (725)
Q Consensus 557 ---~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~-------~i~~l----~~H~~~V~~IafsPd~~~Lasgs~DgtIr 622 (725)
.|.+++|||||++||+|+.||+|+|||+.++. .+.++ .+|...|.+++|+|++ +++++.|++|+
T Consensus 128 ~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVr 205 (588)
T 2j04_A 128 SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVF 205 (588)
T ss_dssp TTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEE
T ss_pred ccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEE
Confidence 49999999999999999999999999998875 36676 6788899999999999 88899999999
Q ss_pred EEECCCCCe--eeEEE-ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee-EEEEecCCCeEEEEE--ecCCCE
Q 004885 623 VWDTENPDY--SLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFKCQSGATQMRF--QPRLGR 696 (725)
Q Consensus 623 vWDl~~~~~--~l~~~-~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~-v~~~~~~~~V~sv~f--spdg~~ 696 (725)
+||+..... ...++ .+|...|.+|+|+ +. .+++++ +++|++||+.++.. ...+.+...|..|.| +|++..
T Consensus 206 lWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~-~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~ 281 (588)
T 2j04_A 206 SMTVSASSHQPVSRMIQNASRRKITDLKIV--DY-KVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTI 281 (588)
T ss_dssp EECCCSSSSCCCEEEEECCCSSCCCCEEEE--TT-EEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEE
T ss_pred EEECCCCccccceeeecccccCcEEEEEEE--CC-EEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCE
Confidence 999988762 23456 4788899999999 44 666776 69999999998887 444466788999999 999888
Q ss_pred EEEEEcCCeEEEEECC
Q 004885 697 ILAAAIENYISILDVE 712 (725)
Q Consensus 697 Lla~s~Dg~V~IwDl~ 712 (725)
|+++..||+ ++|...
T Consensus 282 La~a~edG~-klw~~d 296 (588)
T 2j04_A 282 LLMSNKTSY-KVLLED 296 (588)
T ss_dssp EEECSSCEE-EEEESS
T ss_pred EEEEcCCCC-EEEeec
Confidence 888888999 999987
No 117
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.88 E-value=6.2e-21 Score=237.56 Aligned_cols=173 Identities=24% Similarity=0.377 Sum_probs=161.6
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004885 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (725)
Q Consensus 549 ~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~ 628 (725)
..+.+|.+.|++++|+|++++|++|+.||+|+|||+.+++.+..+.+|...|++++|+|++++|++++.|++|+|||+.+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeEEEecCCCCeEEEEEccCC-CeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeE
Q 004885 629 PDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYI 706 (725)
Q Consensus 629 ~~~~l~~~~~h~~~V~sl~fsP~g-~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V 706 (725)
+. ++..+.+|...|.+++|+|++ ..++++++.|+.|++||++++.++..+.. ...|++++|+|++.+|++++.|+.|
T Consensus 689 ~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v 767 (1249)
T 3sfz_A 689 GK-LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 767 (1249)
T ss_dssp CC-EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEE
T ss_pred Cc-eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeE
Confidence 88 789999999999999999963 34788999999999999999999988875 6789999999999999999999999
Q ss_pred EEEECCCCeEEEEEeC
Q 004885 707 SILDVETQVCRLKLQV 722 (725)
Q Consensus 707 ~IwDl~tg~~v~~l~G 722 (725)
++||+++++++..+..
T Consensus 768 ~vwd~~~~~~~~~~~~ 783 (1249)
T 3sfz_A 768 RLWDVRSANERKSINV 783 (1249)
T ss_dssp EEEEGGGTEEEEEEEC
T ss_pred EEEeCCCCcccceecc
Confidence 9999999988887753
No 118
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.88 E-value=2.9e-20 Score=193.88 Aligned_cols=195 Identities=17% Similarity=0.315 Sum_probs=160.0
Q ss_pred EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004885 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 587 (725)
Q Consensus 508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~ 587 (725)
+|++| .|++|++|+...+ .......+.+|...|++++|+|++++|++|+.|++|+|||++++
T Consensus 38 ~lAvg-~D~tV~iWd~~tg-----------------~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~ 99 (318)
T 4ggc_A 38 VLAVA-LDNSVYLWSASSG-----------------DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ 99 (318)
T ss_dssp EEEEE-ETTEEEEEETTTC-----------------CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred EEEEE-eCCEEEEEECCCC-----------------CEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc
Confidence 56765 5999999954332 11222345678899999999999999999999999999999999
Q ss_pred eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEE
Q 004885 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667 (725)
Q Consensus 588 ~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~I 667 (725)
+.+..+.+|...+.++.+. +..+++++.++.+++|+.......+..+.+|...+..+.|++++. ++++++.|+.|++
T Consensus 100 ~~~~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~i 176 (318)
T 4ggc_A 100 KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNV 176 (318)
T ss_dssp EEEEEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEE
T ss_pred eeEEEecCccceEEEeecC--CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC-EEEEEecCcceeE
Confidence 9999999999998877664 579999999999999999988778889999999999999999988 6779999999999
Q ss_pred EECCCCeeE----EEE-ecCCCeEEEEEecCCCEEE---EEEcCCeEEEEECCCCeEEEEEeCC
Q 004885 668 WSINNGSCA----GVF-KCQSGATQMRFQPRLGRIL---AAAIENYISILDVETQVCRLKLQVS 723 (725)
Q Consensus 668 wDl~t~~~v----~~~-~~~~~V~sv~fspdg~~Ll---a~s~Dg~V~IwDl~tg~~v~~l~GH 723 (725)
||+++++.. ... .+...|.+++|+|++..++ +++.++.|++||.++.........+
T Consensus 177 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~ 240 (318)
T 4ggc_A 177 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 240 (318)
T ss_dssp EESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECS
T ss_pred EECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccce
Confidence 999976532 222 2367799999999877544 3344799999999998877666543
No 119
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.88 E-value=1.9e-21 Score=206.15 Aligned_cols=191 Identities=16% Similarity=0.192 Sum_probs=150.5
Q ss_pred CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEE--cCCCCEEEEEeCCCcEEEE
Q 004885 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHF--SPDGKLLATGGHDKKAVLW 582 (725)
Q Consensus 505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~f--Spdg~~LaSgs~Dg~V~IW 582 (725)
...++++|+.|+.|++|..... . ...+.+|...|++++| ++++++|++++.|+.|++|
T Consensus 97 ~~~~l~s~~~dg~v~iwd~~~~-------------------~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vw 156 (368)
T 3mmy_A 97 DGSKVFTASCDKTAKMWDLSSN-------------------Q-AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW 156 (368)
T ss_dssp TSSEEEEEETTSEEEEEETTTT-------------------E-EEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEE
T ss_pred CCCEEEEEcCCCcEEEEEcCCC-------------------C-ceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEE
Confidence 3348999999999999954322 1 2234579999999999 8999999999999999999
Q ss_pred ECCCCeEEEEeccCC-----------------------------------------CCeEEEEEcCCCCE----EEEEeC
Q 004885 583 CTESFTVKSTLEEHT-----------------------------------------QWITDVRFSPSLSR----LATSSA 617 (725)
Q Consensus 583 dl~~~~~i~~l~~H~-----------------------------------------~~V~~IafsPd~~~----Lasgs~ 617 (725)
|+++++.+..+..|. ..+.++++.++... +++++.
T Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (368)
T 3mmy_A 157 DTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI 236 (368)
T ss_dssp CSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET
T ss_pred ECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC
Confidence 998877665554332 23444555444333 999999
Q ss_pred CCeEEEEECCCCC--eeeEEEecCCC------------CeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-C
Q 004885 618 DRTVRVWDTENPD--YSLRTFTGHST------------TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-Q 682 (725)
Q Consensus 618 DgtIrvWDl~~~~--~~l~~~~~h~~------------~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~ 682 (725)
|+.|++||++... ..+..+.+|.. .|++++|+|++. +|++++.||.|+|||+++++++..+.. .
T Consensus 237 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 315 (368)
T 3mmy_A 237 EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG-TLATVGSDGRFSFWDKDARTKLKTSEQLD 315 (368)
T ss_dssp TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTC-CEEEEETTSCEEEEETTTTEEEEECCCCS
T ss_pred CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCC-EEEEEccCCeEEEEECCCCcEEEEecCCC
Confidence 9999999999864 25667777765 799999999987 667899999999999999999998876 6
Q ss_pred CCeEEEEEecCCCEEEEEEcCCeEE---EEECCCCeE
Q 004885 683 SGATQMRFQPRLGRILAAAIENYIS---ILDVETQVC 716 (725)
Q Consensus 683 ~~V~sv~fspdg~~Lla~s~Dg~V~---IwDl~tg~~ 716 (725)
..|++++|+|++.+|++++.|+.++ +|+.+....
T Consensus 316 ~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~~~~~ 352 (368)
T 3mmy_A 316 QPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNY 352 (368)
T ss_dssp SCEEEEEECTTSSCEEEEECCCSTTCGGGCCTTSCCE
T ss_pred CCceEEEECCCCCeEEEEecccccccccccCCCccce
Confidence 7899999999999999999987544 444554433
No 120
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.87 E-value=2.9e-20 Score=203.72 Aligned_cols=197 Identities=7% Similarity=0.038 Sum_probs=167.6
Q ss_pred CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEE-EeCCCcEEEEEC
Q 004885 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLAT-GGHDKKAVLWCT 584 (725)
Q Consensus 506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaS-gs~Dg~V~IWdl 584 (725)
..++++++.|+.|++|.... .+.+..+..|...+.+++|+|+++++++ ++.|+.|++||+
T Consensus 181 ~~~~~s~~~d~~v~~~d~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~ 241 (433)
T 3bws_A 181 NELWVSQMQANAVHVFDLKT-------------------LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDR 241 (433)
T ss_dssp TEEEEEEGGGTEEEEEETTT-------------------CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CEEEEEECCCCEEEEEECCC-------------------ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEEC
Confidence 45889999999999995422 2345566688999999999999998854 447999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe--------CCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEE
Q 004885 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSS--------ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656 (725)
Q Consensus 585 ~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs--------~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~ll 656 (725)
++++.+..+..+ ..+.+++|+|++++|++++ .|+.|++||+.++. .+..+ .|...+.+++|+|+++.++
T Consensus 242 ~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~-~~~~~-~~~~~~~~~~~~~~g~~l~ 318 (433)
T 3bws_A 242 KTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK-LIDTI-GPPGNKRHIVSGNTENKIY 318 (433)
T ss_dssp TTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE-EEEEE-EEEECEEEEEECSSTTEEE
T ss_pred CCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc-EEeec-cCCCCcceEEECCCCCEEE
Confidence 999988888764 4599999999999999888 58899999999876 34443 4556899999999998888
Q ss_pred EEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEc---------------CCeEEEEECCCCeEEEEEe
Q 004885 657 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI---------------ENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 657 aSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~---------------Dg~V~IwDl~tg~~v~~l~ 721 (725)
++++.|+.|++||+.+++++..+.....+.+++|+|++.+|++++. ||.|++||+.+++++..+.
T Consensus 319 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~ 398 (433)
T 3bws_A 319 VSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE 398 (433)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE
T ss_pred EEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec
Confidence 8989999999999999999999888888999999999999888877 4699999999999999887
Q ss_pred CCC
Q 004885 722 VSH 724 (725)
Q Consensus 722 GH~ 724 (725)
++.
T Consensus 399 ~~~ 401 (433)
T 3bws_A 399 AGN 401 (433)
T ss_dssp CSS
T ss_pred CCC
Confidence 653
No 121
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.87 E-value=2.4e-21 Score=212.35 Aligned_cols=207 Identities=8% Similarity=0.016 Sum_probs=142.4
Q ss_pred CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (725)
Q Consensus 477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~ 556 (725)
.+...+..+.|+|.... .....+++|++|+.|++|++|+.... ..+..+..|..
T Consensus 134 gH~~~v~~v~~~p~~~~-------~~~~d~~~las~s~D~tv~~Wd~~~~-------------------~~~~~~~~~~~ 187 (393)
T 4gq1_A 134 GHHNFVNDIDIADVYSA-------DNRLAEQVIASVGDDCTLIIWRLTDE-------------------GPILAGYPLSS 187 (393)
T ss_dssp SCSSCEEEEEEEEEECT-------TCSEEEEEEEEEETTSEEEEEEEETT-------------------EEEEEEEECSS
T ss_pred CCCCceEEEEEcccccc-------ccCCCCCEEEEEECCCeEEEEECCCC-------------------ceeeeecCCCC
Confidence 35566777777762210 00123469999999999999944222 34556678899
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEE-------------------------eccCCCCeEEEEEc-CCC
Q 004885 557 KVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKST-------------------------LEEHTQWITDVRFS-PSL 609 (725)
Q Consensus 557 ~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~~~~~i~~-------------------------l~~H~~~V~~Iafs-Pd~ 609 (725)
.|.+++|+|++. +|++|+.|++|++||+.++..... ..+|...|.++.|+ |++
T Consensus 188 ~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg 267 (393)
T 4gq1_A 188 PGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDG 267 (393)
T ss_dssp CEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTT
T ss_pred CcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCC
Confidence 999999999875 899999999999999987654322 24677889999987 699
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEE------------------Ecc-CCCeEEEEEeCCCcEEEEEC
Q 004885 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD------------------FHP-SKEDLLCSCDNNSEIRYWSI 670 (725)
Q Consensus 610 ~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~------------------fsP-~g~~llaSgs~Dg~I~IwDl 670 (725)
..|++++.|+++++||+.... ....+..|...+..+. |+| .+..++++++.||.|+|||+
T Consensus 268 ~~l~s~s~d~~i~vwd~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~ 346 (393)
T 4gq1_A 268 SGILAMCKSGAWLRWNLFANN-DYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINT 346 (393)
T ss_dssp CEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEET
T ss_pred CEEEEEeCCCCEEEEECccCC-CCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEEC
Confidence 999999999999999998765 3444444444433333 333 34556778889999999999
Q ss_pred CCCeeEEEEe-cCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004885 671 NNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDV 711 (725)
Q Consensus 671 ~t~~~v~~~~-~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl 711 (725)
.++.++..+. +...|.+|+|+|||++|++++.|| |.+|.+
T Consensus 347 ~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 347 YEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp TCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 9988776654 477899999999999998887655 666654
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.87 E-value=3.5e-20 Score=200.24 Aligned_cols=194 Identities=16% Similarity=0.174 Sum_probs=162.7
Q ss_pred cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECC
Q 004885 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE 585 (725)
Q Consensus 507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~L-aSgs~Dg~V~IWdl~ 585 (725)
.++++++.|+.|++|+...+ +.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~-------------------~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~ 62 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSN-------------------KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (391)
T ss_dssp EEEEEETTTTEEEEEETTTT-------------------EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCC-------------------eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence 47788999999999954222 3445566664 48999999999976 677789999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc
Q 004885 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (725)
Q Consensus 586 ~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs-~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~ 664 (725)
+++.+..+..+. .|.+++|+|++++|++++ .|+.|++||+.++. .+..+..+ ..+.+++|+|+++.++++++.|+.
T Consensus 63 ~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~-~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~ 139 (391)
T 1l0q_A 63 TNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT-VAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKT 139 (391)
T ss_dssp TTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEECS-SSEEEEEECTTSSEEEEEETTTTE
T ss_pred CCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCe-EEEEEeCC-CCcceEEECCCCCEEEEEeCCCCE
Confidence 999988887655 899999999999886554 67999999999877 56666544 568999999999988789999999
Q ss_pred EEEEECCCCeeEEEEecCCCeEEEEEecCCCEEE-EEEcCCeEEEEECCCCeEEEEEeCC
Q 004885 665 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL-AAAIENYISILDVETQVCRLKLQVS 723 (725)
Q Consensus 665 I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Ll-a~s~Dg~V~IwDl~tg~~v~~l~GH 723 (725)
|++||+++++++..+..+..+.+++|+|++.+|+ +++.|+.|++||+++++++..+..+
T Consensus 140 v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~ 199 (391)
T 1l0q_A 140 VSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE 199 (391)
T ss_dssp EEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred EEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecC
Confidence 9999999999999998888899999999999885 4556899999999999998887654
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.86 E-value=3.3e-20 Score=199.18 Aligned_cols=169 Identities=12% Similarity=0.057 Sum_probs=130.8
Q ss_pred CCCCCeEEEEEcCC----CCEEEEEeC--------------------CCcEEEEEC-CCCeEEEEeccCCCCeEEEEEcC
Q 004885 553 ASTSKVESCHFSPD----GKLLATGGH--------------------DKKAVLWCT-ESFTVKSTLEEHTQWITDVRFSP 607 (725)
Q Consensus 553 ~H~~~V~~i~fSpd----g~~LaSgs~--------------------Dg~V~IWdl-~~~~~i~~l~~H~~~V~~IafsP 607 (725)
-+...|..++|+|| +.++++++. |+.|++|++ .+++.+..+.+|...++.++|++
T Consensus 109 ~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~ 188 (356)
T 2w18_A 109 LEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAE 188 (356)
T ss_dssp SSEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEE
T ss_pred ccccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeec
Confidence 34456788888888 777776553 888899998 44778888888888888888888
Q ss_pred ---CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCC---CCeEEEEEccCCCeE-----------EEEEeCCCcEEEEEC
Q 004885 608 ---SLSRLATSSADRTVRVWDTENPDYSLRTFTGHS---TTVMSLDFHPSKEDL-----------LCSCDNNSEIRYWSI 670 (725)
Q Consensus 608 ---d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~---~~V~sl~fsP~g~~l-----------laSgs~Dg~I~IwDl 670 (725)
++.+|++++.|++|+|||+.++. ++.++.+|. ..|.+++|+|+|..+ +++|+.|++|++||.
T Consensus 189 ~~g~~~~LaSgS~D~TIkIWDl~TGk-~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~ 267 (356)
T 2w18_A 189 VQGMQEALLGTTIMNNIVIWNLKTGQ-LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINP 267 (356)
T ss_dssp EETSTTEEEEEETTSEEEEEETTTCC-EEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEET
T ss_pred cCCCCceEEEecCCCcEEEEECCCCc-EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEEC
Confidence 67899999999999999999988 788888654 467888999998754 367888999999999
Q ss_pred CCCeeEEEEe-----c-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885 671 NNGSCAGVFK-----C-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH 724 (725)
Q Consensus 671 ~t~~~v~~~~-----~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~ 724 (725)
.+++++..+. . ...+.+.+++ +..+++++.|++|+|||+.+++++++|+||+
T Consensus 268 ~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~ 325 (356)
T 2w18_A 268 KTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVS 325 (356)
T ss_dssp TTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC-
T ss_pred CCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCC
Confidence 9999887663 1 2224444444 6788899999999999999999999999996
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.85 E-value=7.3e-20 Score=200.51 Aligned_cols=202 Identities=10% Similarity=0.104 Sum_probs=164.5
Q ss_pred CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (725)
Q Consensus 505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl 584 (725)
...++++++.|+.|++|....+.. ........+.+|.+.|.+++|+++++++++++.|+.|++||+
T Consensus 133 ~~~~~~~~~~~~~i~~~d~~~g~~--------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~ 198 (433)
T 3bws_A 133 NTRLAIPLLEDEGMDVLDINSGQT--------------VRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDL 198 (433)
T ss_dssp SSEEEEEBTTSSSEEEEETTTCCE--------------EEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEET
T ss_pred CCeEEEEeCCCCeEEEEECCCCeE--------------eeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEEC
Confidence 345888888899999996543310 000011134689999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEe---
Q 004885 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--- 660 (725)
Q Consensus 585 ~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs-~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs--- 660 (725)
++++.+..+..|...+.+++|+|+++++++++ .|+.|++||++++. .+..+..+ ..+.+++|+|++..+++++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~-~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~ 276 (433)
T 3bws_A 199 KTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL-EIRKTDKI-GLPRGLLLSKDGKELYIAQFSAS 276 (433)
T ss_dssp TTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE-EEEECCCC-SEEEEEEECTTSSEEEEEEEESC
T ss_pred CCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc-EEEEecCC-CCceEEEEcCCCCEEEEEECCCC
Confidence 99999999999999999999999999886554 79999999999876 56666544 45999999999986654443
Q ss_pred ----CCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEE-EcCCeEEEEECCCCeEEEEEeC
Q 004885 661 ----NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA-AIENYISILDVETQVCRLKLQV 722 (725)
Q Consensus 661 ----~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~-s~Dg~V~IwDl~tg~~v~~l~G 722 (725)
.|+.|++||+++++.+..+.+...+.+++|+|++++++++ +.|+.|++||+++++++..+..
T Consensus 277 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~ 343 (433)
T 3bws_A 277 NQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPV 343 (433)
T ss_dssp TTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecC
Confidence 4789999999999998888776789999999999876555 6699999999999999888763
No 125
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.85 E-value=4.5e-20 Score=199.37 Aligned_cols=151 Identities=21% Similarity=0.238 Sum_probs=122.8
Q ss_pred EEEEcCCCCEEEE--EeCCCcEEEEECCCCe----------------EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCe-
Q 004885 560 SCHFSPDGKLLAT--GGHDKKAVLWCTESFT----------------VKSTLEEHTQWITDVRFSPSLSRLATSSADRT- 620 (725)
Q Consensus 560 ~i~fSpdg~~LaS--gs~Dg~V~IWdl~~~~----------------~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dgt- 620 (725)
.+++++ .++++ |+.||.|++||+.++. ++..+.+|...|++++|+|++.+|++|+.|++
T Consensus 142 ~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~ 219 (355)
T 3vu4_A 142 VCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTI 219 (355)
T ss_dssp EEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSE
T ss_pred eEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCE
Confidence 444554 55655 5789999999998765 26788999999999999999999999999998
Q ss_pred EEEEECCCCCeeeEEEe-c-CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEE--------------------E
Q 004885 621 VRVWDTENPDYSLRTFT-G-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--------------------V 678 (725)
Q Consensus 621 IrvWDl~~~~~~l~~~~-~-h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~--------------------~ 678 (725)
|+|||++++. ++..+. + |...|.+++|+|++. +|++++.|++|+|||++.+.... .
T Consensus 220 v~iwd~~~~~-~~~~~~~g~h~~~v~~~~~s~~~~-~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (355)
T 3vu4_A 220 IRVFKTEDGV-LVREFRRGLDRADVVDMKWSTDGS-KLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCN 297 (355)
T ss_dssp EEEEETTTCC-EEEEEECTTCCSCEEEEEECTTSC-EEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEE
T ss_pred EEEEECCCCc-EEEEEEcCCCCCcEEEEEECCCCC-EEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeE
Confidence 9999999988 778887 5 999999999999988 67799999999999997653111 1
Q ss_pred Ee--c--CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885 679 FK--C--QSGATQMRFQPRLGRILAAAIENYISILDVETQ 714 (725)
Q Consensus 679 ~~--~--~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg 714 (725)
+. . ......++|++++.+|++++.||.+++|++..+
T Consensus 298 ~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 298 FKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp EECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred EEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 11 1 122477999999999999999999999998653
No 126
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.85 E-value=1e-19 Score=191.95 Aligned_cols=188 Identities=15% Similarity=0.103 Sum_probs=149.9
Q ss_pred cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004885 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (725)
Q Consensus 507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~ 586 (725)
.++++++.|+.|++|......... .....+.+..+. |...|.+++|++++ |++++.|+.|++||+++
T Consensus 113 ~~l~s~~~d~~i~iwd~~~~~~~~----------~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~ 179 (342)
T 1yfq_A 113 DKLIAASWDGLIEVIDPRNYGDGV----------IAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPL 179 (342)
T ss_dssp TEEEEEETTSEEEEECHHHHTTBC----------EEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSC
T ss_pred CEEEEEcCCCeEEEEccccccccc----------ccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCc
Confidence 389999999999999543200000 000011222333 78899999999877 99999999999999987
Q ss_pred -Ce--EEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-----CeeeEEEecCCC---------CeEEEEE
Q 004885 587 -FT--VKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENP-----DYSLRTFTGHST---------TVMSLDF 648 (725)
Q Consensus 587 -~~--~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~-----~~~l~~~~~h~~---------~V~sl~f 648 (725)
+. .......|...|.+++|+| ++.+|++++.|+.|++||++.. ...+..+.+|.. .|.+++|
T Consensus 180 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 259 (342)
T 1yfq_A 180 CEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF 259 (342)
T ss_dssp CTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEE
T ss_pred cccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEE
Confidence 44 3345567889999999999 9999999999999999999887 236788888865 9999999
Q ss_pred ccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEEcCCe-EEEEE
Q 004885 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENY-ISILD 710 (725)
Q Consensus 649 sP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s~Dg~-V~IwD 710 (725)
+|++. +|++++.||.|++||+++++++..+.. ...|++++ |++.+|++++.|++ .+.|.
T Consensus 260 s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 260 SPRHK-FLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CTTTC-CEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred cCCCC-EEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 99988 567889999999999999999988875 46789998 99999999999998 44444
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.81 E-value=4.1e-18 Score=188.43 Aligned_cols=207 Identities=11% Similarity=0.100 Sum_probs=161.2
Q ss_pred CCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCC---cEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDD---NVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST 555 (725)
Q Consensus 479 s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~---~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~ 555 (725)
...+..+.|+|++. .++.++.|+ .|++|....+ + ...+..|.
T Consensus 178 ~~~v~~~~~Spdg~---------------~la~~s~~~~~~~i~~~d~~tg-------------------~-~~~l~~~~ 222 (415)
T 2hqs_A 178 PQPLMSPAWSPDGS---------------KLAYVTFESGRSALVIQTLANG-------------------A-VRQVASFP 222 (415)
T ss_dssp SSCEEEEEECTTSS---------------EEEEEECTTSSCEEEEEETTTC-------------------C-EEEEECCS
T ss_pred CCcceeeEEcCCCC---------------EEEEEEecCCCcEEEEEECCCC-------------------c-EEEeecCC
Confidence 34577788888876 778888775 8899954322 1 12455778
Q ss_pred CCeEEEEEcCCCCEEE-EEeCCCc--EEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEECCCC
Q 004885 556 SKVESCHFSPDGKLLA-TGGHDKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWDTENP 629 (725)
Q Consensus 556 ~~V~~i~fSpdg~~La-Sgs~Dg~--V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-Dg--tIrvWDl~~~ 629 (725)
+.+.+++|+|||++|+ +++.|+. |++||+.+++. ..+..|...+.+++|+|++++|++++. ++ .|.+||+.++
T Consensus 223 ~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~ 301 (415)
T 2hqs_A 223 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG 301 (415)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS
T ss_pred CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCC
Confidence 8899999999999877 6666654 99999988776 567788899999999999999988876 44 6778898876
Q ss_pred CeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC--CcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCC---
Q 004885 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN--- 704 (725)
Q Consensus 630 ~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D--g~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg--- 704 (725)
. ...+..+...+.+++|+|+|+++++++..+ ..|++||+.++++.. +.....+.+++|+|+|.+|++++.++
T Consensus 302 ~--~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~~~~~~~~~~spdg~~l~~~s~~~~~~ 378 (415)
T 2hqs_A 302 A--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LSSTFLDETPSLAPNGTMVIYSSSQGMGS 378 (415)
T ss_dssp C--CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CCCSSSCEEEEECTTSSEEEEEEEETTEE
T ss_pred C--EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ecCCCCcCCeEEcCCCCEEEEEEcCCCcc
Confidence 5 455566777899999999999666555543 489999999988753 43345899999999999999988876
Q ss_pred eEEEEECCCCeEEEEEeCCCC
Q 004885 705 YISILDVETQVCRLKLQVSHS 725 (725)
Q Consensus 705 ~V~IwDl~tg~~v~~l~GH~s 725 (725)
.|++||+. +.++..+.+|.+
T Consensus 379 ~l~~~d~~-g~~~~~l~~~~~ 398 (415)
T 2hqs_A 379 VLNLVSTD-GRFKARLPATDG 398 (415)
T ss_dssp EEEEEETT-SCCEEECCCSSS
T ss_pred EEEEEECC-CCcEEEeeCCCC
Confidence 79999997 566777887753
No 128
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.81 E-value=3.5e-19 Score=198.69 Aligned_cols=159 Identities=13% Similarity=0.146 Sum_probs=130.5
Q ss_pred CCCCCeEEEEEcCCCCEEE----EEeCCCcEEEEECCCC--------e---EEEEeccCCCCeEEEEEcCC-CCEEEEEe
Q 004885 553 ASTSKVESCHFSPDGKLLA----TGGHDKKAVLWCTESF--------T---VKSTLEEHTQWITDVRFSPS-LSRLATSS 616 (725)
Q Consensus 553 ~H~~~V~~i~fSpdg~~La----Sgs~Dg~V~IWdl~~~--------~---~i~~l~~H~~~V~~IafsPd-~~~Lasgs 616 (725)
.|...|++++|+|++++|+ +|+.|++|+|||+.+. + .+..+.+|...|++|+|+|+ +.+|++++
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 4678899999999999999 7888999999998653 1 24566789999999999997 88999999
Q ss_pred CCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC--------CCeEEE
Q 004885 617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--------SGATQM 688 (725)
Q Consensus 617 ~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~--------~~V~sv 688 (725)
.|++|++||++++. .+....+|...|.+++|+|+|. +|++|+.||.|++||++ +.....+..+ ..|.++
T Consensus 170 ~Dg~v~iwD~~~~~-~~~~~~~~~~~v~~v~wspdg~-~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v 246 (434)
T 2oit_A 170 ADGSIAVLQVTETV-KVCATLPSTVAVTSVCWSPKGK-QLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDV 246 (434)
T ss_dssp TTSCEEEEEESSSE-EEEEEECGGGCEEEEEECTTSS-CEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEE
T ss_pred CCCeEEEEEcCCCc-ceeeccCCCCceeEEEEcCCCC-EEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEE
Confidence 99999999999875 5666677889999999999987 56688899999999999 6655555431 168999
Q ss_pred EEecCCCEEEEEE-cCC------eEEEEECCCC
Q 004885 689 RFQPRLGRILAAA-IEN------YISILDVETQ 714 (725)
Q Consensus 689 ~fspdg~~Lla~s-~Dg------~V~IwDl~tg 714 (725)
+|++++.++++.+ .|| .+++||+++.
T Consensus 247 ~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 247 LWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 9999866665443 343 3899999864
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.79 E-value=2.3e-17 Score=189.32 Aligned_cols=194 Identities=10% Similarity=0.052 Sum_probs=161.5
Q ss_pred cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC--
Q 004885 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT-- 584 (725)
Q Consensus 507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl-- 584 (725)
.++++++.|++|.+|+. .+.+.+.++..+.. +.+++|+|||++|++++.|++|++||+
T Consensus 150 ~~~vs~~~d~~V~v~D~-------------------~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~ 209 (543)
T 1nir_A 150 LFSVTLRDAGQIALVDG-------------------DSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWA 209 (543)
T ss_dssp EEEEEEGGGTEEEEEET-------------------TTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred EEEEEEcCCCeEEEEEC-------------------CCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcC
Confidence 47888999999999943 22244556663333 899999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcC----CCCEEEEEeC-CCeEEEEECCCCCeeeEEEec----------CC-CCeEEEEE
Q 004885 585 ESFTVKSTLEEHTQWITDVRFSP----SLSRLATSSA-DRTVRVWDTENPDYSLRTFTG----------HS-TTVMSLDF 648 (725)
Q Consensus 585 ~~~~~i~~l~~H~~~V~~IafsP----d~~~Lasgs~-DgtIrvWDl~~~~~~l~~~~~----------h~-~~V~sl~f 648 (725)
.+++++.++. +...+..++|+| ++++|++++. +++|.|||..+.+ ++..+.. |. ..+.++.|
T Consensus 210 ~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~-~~~~i~~~g~~~~~~~~~~~~~v~~i~~ 287 (543)
T 1nir_A 210 KEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE-PKQIVSTRGMTVDTQTYHPEPRVAAIIA 287 (543)
T ss_dssp SSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC-EEEEEECCEECSSSCCEESCCCEEEEEE
T ss_pred CCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc-cceeecccCcccCccccccCCceEEEEE
Confidence 7888888887 456689999999 9999999885 8999999999887 6666653 22 37899999
Q ss_pred ccCCCeEEEEEeCCCcEEEEECCCCeeEE--EEecCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeC
Q 004885 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQV 722 (725)
Q Consensus 649 sP~g~~llaSgs~Dg~I~IwDl~t~~~v~--~~~~~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~tg~~v~~l~G 722 (725)
+|++..++++...++.|.+||+.+.+.+. .+.....+..+.|+|+|++|++++. +++|.|||+++++++..+..
T Consensus 288 s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~ 364 (543)
T 1nir_A 288 SHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV 364 (543)
T ss_dssp CSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred CCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeecc
Confidence 99999899999999999999998866544 5555667889999999998887765 79999999999999999885
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.78 E-value=1.8e-17 Score=183.31 Aligned_cols=171 Identities=19% Similarity=0.187 Sum_probs=139.0
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEeCCC--eEE
Q 004885 549 QLIPASTSKVESCHFSPDGKLLATGGHDK---KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADR--TVR 622 (725)
Q Consensus 549 ~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg---~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~La-sgs~Dg--tIr 622 (725)
..+.+|...|.+++|+|||++|++++.|+ .|++||+.+++.. .+..|...+.+++|+|++++|+ +++.|+ .|+
T Consensus 172 ~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~ 250 (415)
T 2hqs_A 172 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 250 (415)
T ss_dssp EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEE
Confidence 45567888999999999999999999885 9999999988775 5667888999999999999887 666655 499
Q ss_pred EEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEE
Q 004885 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA 700 (725)
Q Consensus 623 vWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg--~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~ 700 (725)
+||+.++. ...+..|...+.+++|+|+|+.+++++..++ .|++||+.++++.....+...+.+++|+|+|++|+++
T Consensus 251 ~~d~~~~~--~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~ 328 (415)
T 2hqs_A 251 VMDLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMV 328 (415)
T ss_dssp EEETTTCC--EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEE
T ss_pred EEECCCCC--EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEE
Confidence 99998876 4677788889999999999997766665455 6788899888754433345678899999999999988
Q ss_pred EcC---CeEEEEECCCCeEEEEEeCC
Q 004885 701 AIE---NYISILDVETQVCRLKLQVS 723 (725)
Q Consensus 701 s~D---g~V~IwDl~tg~~v~~l~GH 723 (725)
+.+ ..|++||+.++++. .+..|
T Consensus 329 ~~~~g~~~i~~~d~~~~~~~-~l~~~ 353 (415)
T 2hqs_A 329 SSNGGQQHIAKQDLATGGVQ-VLSST 353 (415)
T ss_dssp EECSSCEEEEEEETTTCCEE-ECCCS
T ss_pred ECcCCceEEEEEECCCCCEE-EecCC
Confidence 874 58999999998774 44443
No 131
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.77 E-value=1.9e-16 Score=167.59 Aligned_cols=164 Identities=11% Similarity=0.135 Sum_probs=140.0
Q ss_pred eEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEE
Q 004885 558 VESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs--~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~ 635 (725)
+.+++|+|+++++++++ .++.|.+||..+++.+..+..+...+.+++|+|++++|++++.++.|.+||+.++. .+..
T Consensus 143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~-~~~~ 221 (353)
T 3vgz_A 143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNK-ILSR 221 (353)
T ss_dssp EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTE-EEEE
T ss_pred CceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCe-EEEE
Confidence 78999999999877776 47899999999999998887666778999999999999999999999999999877 4555
Q ss_pred Eec----CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEE-cCCeEEEEE
Q 004885 636 FTG----HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILD 710 (725)
Q Consensus 636 ~~~----h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s-~Dg~V~IwD 710 (725)
+.. +...+.+++|+|+++.+++++..++.|.+||+.+++.+..+..... ..++|+|++++++++. .++.|.+||
T Consensus 222 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~~v~~~d 300 (353)
T 3vgz_A 222 KKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVTHRQAGKVSVID 300 (353)
T ss_dssp EECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEECCCCeEEEEE
Confidence 543 4556889999999998887777779999999999999888876443 6799999999877776 589999999
Q ss_pred CCCCeEEEEEeCC
Q 004885 711 VETQVCRLKLQVS 723 (725)
Q Consensus 711 l~tg~~v~~l~GH 723 (725)
+.+++.+..+..+
T Consensus 301 ~~~~~~~~~~~~~ 313 (353)
T 3vgz_A 301 AKSYKVVKTFDTP 313 (353)
T ss_dssp TTTTEEEEEEECC
T ss_pred CCCCeEEEEEecC
Confidence 9999998887654
No 132
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.76 E-value=2e-17 Score=168.99 Aligned_cols=209 Identities=12% Similarity=0.117 Sum_probs=151.6
Q ss_pred CCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCC-CCCCCCccccccccCCCceeeeEEEecCC-CC
Q 004885 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPD-DADPRDRVGRSAEVGKGFTFTEFQLIPAS-TS 556 (725)
Q Consensus 479 s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~H-~~ 556 (725)
...+..+.|+|++. ++++++ ++.|.+|.... . .....+..| ..
T Consensus 41 ~~~v~~~~~spdg~---------------~l~~~~-~~~i~~~d~~~~~-------------------~~~~~~~~~~~~ 85 (297)
T 2ojh_A 41 PELFEAPNWSPDGK---------------YLLLNS-EGLLYRLSLAGDP-------------------SPEKVDTGFATI 85 (297)
T ss_dssp SSCCEEEEECTTSS---------------EEEEEE-TTEEEEEESSSCC-------------------SCEECCCTTCCC
T ss_pred CcceEeeEECCCCC---------------EEEEEc-CCeEEEEeCCCCC-------------------CceEeccccccc
Confidence 34567777887776 677765 78999995543 2 111222333 46
Q ss_pred CeEEEEEcCCCCEEEEEe--CCCcEEEE--ECCCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCCCe
Q 004885 557 KVESCHFSPDGKLLATGG--HDKKAVLW--CTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDY 631 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs--~Dg~V~IW--dl~~~~~i~~l~~H~~~V~~IafsPd~~~La-sgs~DgtIrvWDl~~~~~ 631 (725)
.|.+++|+|++++|++++ .++.+.|| ++.++. ...+..+ ..+.+++|+|++++|+ +++.|+.++||+++....
T Consensus 86 ~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~ 163 (297)
T 2ojh_A 86 CNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG 163 (297)
T ss_dssp BCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC
T ss_pred cccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCC
Confidence 789999999999999998 33455555 444444 3444443 3489999999999877 778899999999754333
Q ss_pred eeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC-CCeeEEEEec-CCCeEEEEEecCCCEEEEEEcC------
Q 004885 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE------ 703 (725)
Q Consensus 632 ~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~-t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~D------ 703 (725)
....+..+...+.+++|+|++..+++++..++.++||+++ .+..+..+.. ...+.+++|+|++.+|++++.+
T Consensus 164 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 243 (297)
T 2ojh_A 164 VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDH 243 (297)
T ss_dssp CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSC
T ss_pred cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcc
Confidence 4667777888999999999999777677678899999886 4555555543 4568899999999999888775
Q ss_pred -----CeEEEEECCCCeE--EEEEeCCC
Q 004885 704 -----NYISILDVETQVC--RLKLQVSH 724 (725)
Q Consensus 704 -----g~V~IwDl~tg~~--v~~l~GH~ 724 (725)
+.|++||+.+++. +..+.+|.
T Consensus 244 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 271 (297)
T 2ojh_A 244 PRDLDVRVQLMDMDGGNVETLFDLFGGQ 271 (297)
T ss_dssp CSSEEEEEEEEETTSCSCEEEEEEEEST
T ss_pred cccCceEEEEEecCCCCceeeeccCCCC
Confidence 5699999998854 55555654
No 133
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.74 E-value=1.9e-16 Score=166.03 Aligned_cols=190 Identities=13% Similarity=0.130 Sum_probs=146.8
Q ss_pred EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEec-C----CCCCeEEEEEcCCCCEEEEEe--------
Q 004885 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-A----STSKVESCHFSPDGKLLATGG-------- 574 (725)
Q Consensus 508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~----H~~~V~~i~fSpdg~~LaSgs-------- 574 (725)
++++++.++.|.+|..... +.+..+. + |...+.+++|+|++++|++++
T Consensus 48 l~v~~~~~~~v~~~d~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 108 (337)
T 1pby_B 48 AYATVNKSESLVKIDLVTG-------------------ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELT 108 (337)
T ss_dssp EEEEETTTTEEEEEETTTC-------------------CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSS
T ss_pred EEEEeCCCCeEEEEECCCC-------------------CeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccc
Confidence 4566667889999954332 1111121 1 122577899999999998886
Q ss_pred ----CCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEe-------------
Q 004885 575 ----HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT------------- 637 (725)
Q Consensus 575 ----~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~------------- 637 (725)
.++.|.+||+.+++.+..+.. ...+.+++|+|++++|+++ ++.|.+||+.++. .+..+.
T Consensus 109 ~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~s~d 184 (337)
T 1pby_B 109 HFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGT-LVEDKPIQSWEAETYAQPD 184 (337)
T ss_dssp CEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTE-EEEEECSTTTTTTTBCCCB
T ss_pred cccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCc-EeeeeeccccCCCceeCCC
Confidence 579999999999888877764 4568889999999988888 6889999988654 222221
Q ss_pred -----------------------------------------------------cCCCCeEEEEEccCCCeEEEEEeCCCc
Q 004885 638 -----------------------------------------------------GHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (725)
Q Consensus 638 -----------------------------------------------------~h~~~V~sl~fsP~g~~llaSgs~Dg~ 664 (725)
.+...+.+++|+|+++.++++ ++.
T Consensus 185 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~---~~~ 261 (337)
T 1pby_B 185 VLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA---YNV 261 (337)
T ss_dssp CCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE---ESE
T ss_pred ccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe---CCe
Confidence 112235579999999865544 689
Q ss_pred EEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885 665 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVS 723 (725)
Q Consensus 665 I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH 723 (725)
|++||+.+++.+..+.....+.+++|+|++++|++++.++.|++||+++++.+..++.+
T Consensus 262 v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 262 LESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp EEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred EEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 99999999999988887778999999999999999888999999999999999998754
No 134
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.74 E-value=2.9e-16 Score=165.41 Aligned_cols=196 Identities=10% Similarity=0.036 Sum_probs=147.3
Q ss_pred EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEEC
Q 004885 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK---KAVLWCT 584 (725)
Q Consensus 508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg---~V~IWdl 584 (725)
+++++..++.|.+|....+. . ....+..+...+.+++|+|++++|+++..++ .|.+||+
T Consensus 54 l~~~~~~~~~i~~~d~~~~~-----------------~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~ 115 (331)
T 3u4y_A 54 VVVTSDFCQTLVQIETQLEP-----------------P-KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSF 115 (331)
T ss_dssp EEEEESTTCEEEEEECSSSS-----------------C-EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEET
T ss_pred EEEEeCCCCeEEEEECCCCc-----------------e-eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEEC
Confidence 33444447889888543221 0 1344455666666699999999999655553 8999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCe-EEEEECCCCCeee---EEEecCCCCeEEEEEccCCCeEEEEE
Q 004885 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRT-VRVWDTENPDYSL---RTFTGHSTTVMSLDFHPSKEDLLCSC 659 (725)
Q Consensus 585 ~~~~~i~~l~~H~~~V~~IafsPd~~~Lasg-s~Dgt-IrvWDl~~~~~~l---~~~~~h~~~V~sl~fsP~g~~llaSg 659 (725)
.+++.+..+.. ...+.+++|+|++++|+++ ..++. |.+|++....... .........+..++|+|+|+++++++
T Consensus 116 ~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~ 194 (331)
T 3u4y_A 116 LKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVAN 194 (331)
T ss_dssp TTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEE
T ss_pred CCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEe
Confidence 99998887765 4457999999999866554 55678 9999998654221 12223445689999999999888888
Q ss_pred eCCCcEEEEECCCCee---EEEEecCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCeE--EEEEeC
Q 004885 660 DNNSEIRYWSINNGSC---AGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVC--RLKLQV 722 (725)
Q Consensus 660 s~Dg~I~IwDl~t~~~---v~~~~~~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~tg~~--v~~l~G 722 (725)
..++.|++||+.+++. +..+.....+..++|+|+|++++++.. ++.|.+||++++++ +..+..
T Consensus 195 ~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~ 263 (331)
T 3u4y_A 195 LIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGH 263 (331)
T ss_dssp TTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEEC
T ss_pred CCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccc
Confidence 8899999999999988 888877778899999999998877654 68899999999977 555543
No 135
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.74 E-value=5.2e-16 Score=178.08 Aligned_cols=200 Identities=12% Similarity=0.112 Sum_probs=154.4
Q ss_pred CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC----CCCEEEEEeC-CCcEE
Q 004885 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP----DGKLLATGGH-DKKAV 580 (725)
Q Consensus 506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp----dg~~LaSgs~-Dg~V~ 580 (725)
.+++++++.|+.|.+|+... .+.+.+..+. +...+..++|+| ||++|+++++ +++|.
T Consensus 190 g~~l~v~~~d~~V~v~D~~~-----------------~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~ 251 (543)
T 1nir_A 190 GRYLLVIGRDARIDMIDLWA-----------------KEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFA 251 (543)
T ss_dssp SCEEEEEETTSEEEEEETTS-----------------SSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEE
T ss_pred CCEEEEECCCCeEEEEECcC-----------------CCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEE
Confidence 34899999999999995410 1223445555 345689999999 9999998885 89999
Q ss_pred EEECCCCeEEEEecc----------CC-CCeEEEEEcCCCCE-EEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEE
Q 004885 581 LWCTESFTVKSTLEE----------HT-QWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648 (725)
Q Consensus 581 IWdl~~~~~i~~l~~----------H~-~~V~~IafsPd~~~-Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~f 648 (725)
|||..+++++.++.. |. ..+..|.++|++.. +++...+++|.+||+.+..........+...+.++.|
T Consensus 252 v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~ 331 (543)
T 1nir_A 252 IMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGW 331 (543)
T ss_dssp EEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEE
T ss_pred EEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceE
Confidence 999999999888764 22 37899999997655 5666778999999998866333223346677889999
Q ss_pred ccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-----CCeEEEEEecCCCEEEEEE--cCCeEEEEECCC-------C
Q 004885 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-----SGATQMRFQPRLGRILAAA--IENYISILDVET-------Q 714 (725)
Q Consensus 649 sP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~-----~~V~sv~fspdg~~Lla~s--~Dg~V~IwDl~t-------g 714 (725)
+|+|+++++++..+++|.+||+.+++++..+... +....+ ++|+++.+++++ .|++|.|||+.+ +
T Consensus 332 spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~ 410 (543)
T 1nir_A 332 DSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAW 410 (543)
T ss_dssp CTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBT
T ss_pred CCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcC
Confidence 9999988888888899999999999999888741 123333 578866655554 479999999999 8
Q ss_pred eEEEEEeCCC
Q 004885 715 VCRLKLQVSH 724 (725)
Q Consensus 715 ~~v~~l~GH~ 724 (725)
++++++++|.
T Consensus 411 ~~v~~l~~~g 420 (543)
T 1nir_A 411 KKVAELQGQG 420 (543)
T ss_dssp SEEEEEECSC
T ss_pred eEEEEEEcCC
Confidence 9999999884
No 136
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.73 E-value=1.1e-16 Score=178.49 Aligned_cols=209 Identities=12% Similarity=0.085 Sum_probs=150.3
Q ss_pred CCCeeEEEEecCCCccccccCCccCCCCcEEE----EeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVD----DGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 554 (725)
Q Consensus 479 s~~~s~l~fs~dg~~~la~~s~~~~~~~~~la----sGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H 554 (725)
...+..+.|++++. +++ +|+.|+.|++|+........ ......+..+..+.+|
T Consensus 92 ~~~v~~l~~spdg~---------------~lav~~~sgs~d~~v~iwd~~~~~~~~--------~~~~~~~~~~~~~~~h 148 (434)
T 2oit_A 92 KFPIHHLALSCDNL---------------TLSACMMSSEYGSIIAFFDVRTFSNEA--------KQQKRPFAYHKLLKDA 148 (434)
T ss_dssp SSCEEEEEECTTSC---------------EEEEEEEETTTEEEEEEEEHHHHHCTT--------CSSCCCSEEEECCCSG
T ss_pred CCcccEEEEcCCCC---------------EEEEEEeccCCCceEEEEEccccccCC--------cCCcceeeeeeccCCC
Confidence 44678889998876 666 79999999999543221000 0011223345667789
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004885 555 TSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (725)
Q Consensus 555 ~~~V~~i~fSpd-g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l 633 (725)
...|++++|+|+ +++|++++.||+|+|||++++..+....+|...|++++|+|++++|++|+.|++|++||++ +. ..
T Consensus 149 ~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~-~~ 226 (434)
T 2oit_A 149 GGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQ-EK 226 (434)
T ss_dssp GGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CC-EE
T ss_pred CCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cc-cc
Confidence 999999999997 7899999999999999999987777777899999999999999999999999999999998 44 34
Q ss_pred EEEecC-------CCCeEEEEEccCCCeEEEEEeCCCc------EEEEECCCCe-----eEEEEe-------c-CCCeEE
Q 004885 634 RTFTGH-------STTVMSLDFHPSKEDLLCSCDNNSE------IRYWSINNGS-----CAGVFK-------C-QSGATQ 687 (725)
Q Consensus 634 ~~~~~h-------~~~V~sl~fsP~g~~llaSgs~Dg~------I~IwDl~t~~-----~v~~~~-------~-~~~V~s 687 (725)
..+..| ...|.+++|++++..+++++..||. +++||+++.. ....+. . ..+..-
T Consensus 227 ~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 306 (434)
T 2oit_A 227 KVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYY 306 (434)
T ss_dssp EEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEE
T ss_pred ccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCccee
Confidence 444433 2379999999987755555555543 8999998642 111111 0 112233
Q ss_pred EEEecCCCEEEEEEc-CCeEEEEECC
Q 004885 688 MRFQPRLGRILAAAI-ENYISILDVE 712 (725)
Q Consensus 688 v~fspdg~~Lla~s~-Dg~V~IwDl~ 712 (725)
+.+-++.+.+++++. .+.|.|+...
T Consensus 307 ~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 307 LSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp EEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred eehhccCCEEEEecCCCCceeEEEec
Confidence 444477777777766 4567777653
No 137
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.73 E-value=1e-16 Score=163.68 Aligned_cols=192 Identities=14% Similarity=0.122 Sum_probs=142.2
Q ss_pred EEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-Ce
Q 004885 510 DDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FT 588 (725)
Q Consensus 510 asGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~-~~ 588 (725)
..++.|+.|.+|..... ....+..|...|.+++|+|++++|++++ ++.|++||+.+ ++
T Consensus 16 ~~~~~~~~i~~~d~~~~--------------------~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~ 74 (297)
T 2ojh_A 16 PGGSMRSSIEIFNIRTR--------------------KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS 74 (297)
T ss_dssp --CCCCEEEEEEETTTT--------------------EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS
T ss_pred CCCCcceeEEEEeCCCC--------------------ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC
Confidence 34567889999944222 1223456788999999999999999987 78999999998 87
Q ss_pred EEEEeccC-CCCeEEEEEcCCCCEEEEEe--CCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcE
Q 004885 589 VKSTLEEH-TQWITDVRFSPSLSRLATSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (725)
Q Consensus 589 ~i~~l~~H-~~~V~~IafsPd~~~Lasgs--~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I 665 (725)
....+..| ...|.+++|+|++++|++++ .++.++||.++........+..+. .+..++|+|+++.+++++..++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~ 153 (297)
T 2ojh_A 75 PEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVF 153 (297)
T ss_dssp CEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEE
T ss_pred ceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCce
Confidence 77666666 37789999999999999998 345556655543222344454443 489999999999888788889999
Q ss_pred EEEEC--CCCeeEEEEecCCCeEEEEEecCCCEEEEEEc-CCeEEEEECC-CCeEEEEEeCC
Q 004885 666 RYWSI--NNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVE-TQVCRLKLQVS 723 (725)
Q Consensus 666 ~IwDl--~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~-tg~~v~~l~GH 723 (725)
+||++ .++.......+...+.+++|+|++.+|++++. ++.++||++. .+..+..+..|
T Consensus 154 ~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 215 (297)
T 2ojh_A 154 DIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDS 215 (297)
T ss_dssp EEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCC
T ss_pred EEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecC
Confidence 99985 44544433344677999999999998887775 8899999886 45556666555
No 138
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.73 E-value=9e-16 Score=161.21 Aligned_cols=199 Identities=14% Similarity=0.169 Sum_probs=141.8
Q ss_pred cEEEEeeCC-CcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEC
Q 004885 507 RFVDDGSLD-DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCT 584 (725)
Q Consensus 507 ~~lasGs~D-~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~-Dg~V~IWdl 584 (725)
+++++++.+ +.|.+|..... ...+..+..+..+. .+.+++|+|++++|++++. ++.|.+||+
T Consensus 50 ~~l~~~~~~~~~v~~~~~~~~---------------~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 50 RYLYVGVRPEFRVLAYRIAPD---------------DGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTT---------------TCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CEEEEeecCCCeEEEEEecCC---------------CCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence 367777665 89999955311 11223344444444 7899999999998877665 889999999
Q ss_pred C---CCeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCC-CCeeeE----EEec-CCCCeEEEEEccCCCe
Q 004885 585 E---SFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTEN-PDYSLR----TFTG-HSTTVMSLDFHPSKED 654 (725)
Q Consensus 585 ~---~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs-~DgtIrvWDl~~-~~~~l~----~~~~-h~~~V~sl~fsP~g~~ 654 (725)
. ..+.+..+..+ ..+.+++|+|++++|++++ .++.|++||+.+ +. ... .+.. ....+.+++|+|++++
T Consensus 114 ~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pdg~~ 191 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH-LVAQDPAEVTTVEGAGPRHMVFHPNEQY 191 (343)
T ss_dssp ETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC-EEEEEEEEEECSTTCCEEEEEECTTSSE
T ss_pred CCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc-eeeecccccccCCCCCcceEEECCCCCE
Confidence 4 34455555543 4589999999999888887 899999999987 43 221 2222 3457889999999997
Q ss_pred EEEEEeCCCcEEEEECCC--Cee--EEEEec-------CCCeEEEEEecCCCEEEEEE-cCCeEEEEECC----CCeEEE
Q 004885 655 LLCSCDNNSEIRYWSINN--GSC--AGVFKC-------QSGATQMRFQPRLGRILAAA-IENYISILDVE----TQVCRL 718 (725)
Q Consensus 655 llaSgs~Dg~I~IwDl~t--~~~--v~~~~~-------~~~V~sv~fspdg~~Lla~s-~Dg~V~IwDl~----tg~~v~ 718 (725)
+++++..++.|++||++. +.. +..+.. ...+..++|+|++++|+++. .++.|.+||+. +.+.+.
T Consensus 192 l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~ 271 (343)
T 1ri6_A 192 AYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEG 271 (343)
T ss_dssp EEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEE
T ss_pred EEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEee
Confidence 877777899999999953 433 223321 12466899999999888666 58999999998 335666
Q ss_pred EEeCC
Q 004885 719 KLQVS 723 (725)
Q Consensus 719 ~l~GH 723 (725)
.+..+
T Consensus 272 ~~~~~ 276 (343)
T 1ri6_A 272 FQPTE 276 (343)
T ss_dssp EEECS
T ss_pred eecCC
Confidence 66543
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.72 E-value=7.7e-16 Score=162.16 Aligned_cols=196 Identities=12% Similarity=0.090 Sum_probs=150.4
Q ss_pred CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEC
Q 004885 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCT 584 (725)
Q Consensus 506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~-Dg~V~IWdl 584 (725)
..++++++.++.|.+|+...+ +.+..+..+...+ +++|+|++++|++++. ++.|++||+
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~-------------------~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~ 69 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTL-------------------EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIET 69 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTC-------------------CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEEC
T ss_pred CEEEEEecCCCeEEEEeCccc-------------------ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEEC
Confidence 346778888999999954322 2333444455556 9999999997776665 889999999
Q ss_pred CCCeE-EEEeccCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEe
Q 004885 585 ESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (725)
Q Consensus 585 ~~~~~-i~~l~~H~~~V~~IafsPd~~~Lasgs~Dg---tIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs 660 (725)
.+++. ...+..+..++.+++|+|++++|+++..++ .|.+||+.++. .+..+.. ...+.+++|+|+|+++++++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~-~~~~~~~-~~~~~~~~~spdg~~l~~~~~ 147 (331)
T 3u4y_A 70 QLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNK-FISTIPI-PYDAVGIAISPNGNGLILIDR 147 (331)
T ss_dssp SSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTE-EEEEEEC-CTTEEEEEECTTSSCEEEEEE
T ss_pred CCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCC-eEEEEEC-CCCccceEECCCCCEEEEEec
Confidence 99887 777777777766699999999999555553 89999999876 5565554 345799999999998888877
Q ss_pred CCCc-EEEEECCCCeeE-----EEEecCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCeE---EEEEeCC
Q 004885 661 NNSE-IRYWSINNGSCA-----GVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVC---RLKLQVS 723 (725)
Q Consensus 661 ~Dg~-I~IwDl~t~~~v-----~~~~~~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~tg~~---v~~l~GH 723 (725)
.++. |++|++.....+ ..+.....+..++|+|+|+++++++. ++.|++||+++++. +..+..+
T Consensus 148 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~ 220 (331)
T 3u4y_A 148 SSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN 220 (331)
T ss_dssp TTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS
T ss_pred CCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC
Confidence 7788 999999864333 22233566899999999997777664 79999999999987 7777654
No 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.72 E-value=2.1e-15 Score=158.40 Aligned_cols=197 Identities=15% Similarity=0.179 Sum_probs=139.4
Q ss_pred EEEEe-eCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECC
Q 004885 508 FVDDG-SLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTE 585 (725)
Q Consensus 508 ~lasG-s~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs-~Dg~V~IWdl~ 585 (725)
+++++ ..++.|.+|... ++.....+..+..+ ..+.+++|+|++++|++++ .|+.|++||+.
T Consensus 97 ~l~~~~~~~~~i~~~d~~----------------~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~ 159 (343)
T 1ri6_A 97 FVFVGSYNAGNVSVTRLE----------------DGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVS 159 (343)
T ss_dssp EEEEEETTTTEEEEEEEE----------------TTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred EEEEEecCCCeEEEEECC----------------CCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEec
Confidence 55444 457889999442 11223344444443 4589999999999888887 89999999998
Q ss_pred C-CeEEE----Eecc-CCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCC--CCee-eEEEe----cC--CCCeEEEEEc
Q 004885 586 S-FTVKS----TLEE-HTQWITDVRFSPSLSRLATSS-ADRTVRVWDTEN--PDYS-LRTFT----GH--STTVMSLDFH 649 (725)
Q Consensus 586 ~-~~~i~----~l~~-H~~~V~~IafsPd~~~Lasgs-~DgtIrvWDl~~--~~~~-l~~~~----~h--~~~V~sl~fs 649 (725)
+ ++... .+.. ....+.+++|+|++++|++++ .++.|++||++. +... ...+. ++ ...+.+++|+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s 239 (343)
T 1ri6_A 160 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT 239 (343)
T ss_dssp TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC
T ss_pred CCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEEC
Confidence 7 54432 2222 345788999999999776555 789999999964 3211 22222 11 2356789999
Q ss_pred cCCCeEEEEEeCCCcEEEEECC--C--CeeEEEEecCCCeEEEEEecCCCEEEEEE-cCCeEEEE--ECCCC--eEEEEE
Q 004885 650 PSKEDLLCSCDNNSEIRYWSIN--N--GSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISIL--DVETQ--VCRLKL 720 (725)
Q Consensus 650 P~g~~llaSgs~Dg~I~IwDl~--t--~~~v~~~~~~~~V~sv~fspdg~~Lla~s-~Dg~V~Iw--Dl~tg--~~v~~l 720 (725)
|+++.+++++..++.|++||+. + .+.+..+.....+..++|+|++.+|++++ .++.|.|| |.+++ +.+..+
T Consensus 240 ~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~ 319 (343)
T 1ri6_A 240 PDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRY 319 (343)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEE
T ss_pred CCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccc
Confidence 9999888788789999999998 3 34555555555699999999999988888 47999999 55566 445555
Q ss_pred e
Q 004885 721 Q 721 (725)
Q Consensus 721 ~ 721 (725)
.
T Consensus 320 ~ 320 (343)
T 1ri6_A 320 A 320 (343)
T ss_dssp E
T ss_pred c
Confidence 4
No 141
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.71 E-value=4.6e-15 Score=156.92 Aligned_cols=166 Identities=10% Similarity=0.028 Sum_probs=135.3
Q ss_pred CCeEEEEEcCCCCEEEE-EeCCCcEEEEECCCCeEEEEeccCCCC---------eEEEEEcCCCCEEEEEe--CCCeEEE
Q 004885 556 SKVESCHFSPDGKLLAT-GGHDKKAVLWCTESFTVKSTLEEHTQW---------ITDVRFSPSLSRLATSS--ADRTVRV 623 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaS-gs~Dg~V~IWdl~~~~~i~~l~~H~~~---------V~~IafsPd~~~Lasgs--~DgtIrv 623 (725)
..+.+++|+|+++++++ +..++.|.+||..+++.+..+..+... +.+++|+|+++++++++ .++.|.+
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWV 168 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEE
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEE
Confidence 34788999999996554 555799999999999988887665432 78999999999887776 4789999
Q ss_pred EECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-----CCCeEEEEEecCCCEEE
Q 004885 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQPRLGRIL 698 (725)
Q Consensus 624 WDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-----~~~V~sv~fspdg~~Ll 698 (725)
||+.++. .+..+..+...+.+++|+|+++.++ +++.++.|.+||+.+++.+..+.. ...+..++|+|++++++
T Consensus 169 ~d~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~-~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 246 (353)
T 3vgz_A 169 VDGGNIK-LKTAIQNTGKMSTGLALDSEGKRLY-TTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAF 246 (353)
T ss_dssp EETTTTE-EEEEECCCCTTCCCCEEETTTTEEE-EECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEE
T ss_pred EcCCCCc-eEEEecCCCCccceEEECCCCCEEE-EEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEE
Confidence 9999877 5666665666688999999998555 566689999999999999888764 33478899999999888
Q ss_pred EEEc-CCeEEEEECCCCeEEEEEeCC
Q 004885 699 AAAI-ENYISILDVETQVCRLKLQVS 723 (725)
Q Consensus 699 a~s~-Dg~V~IwDl~tg~~v~~l~GH 723 (725)
+++. ++.|.+||+.+++.+..+..+
T Consensus 247 ~~~~~~~~v~~~d~~~~~~~~~~~~~ 272 (353)
T 3vgz_A 247 ITDSKAAEVLVVDTRNGNILAKVAAP 272 (353)
T ss_dssp EEESSSSEEEEEETTTCCEEEEEECS
T ss_pred EEeCCCCEEEEEECCCCcEEEEEEcC
Confidence 7776 499999999999998887643
No 142
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.70 E-value=1.8e-15 Score=159.48 Aligned_cols=159 Identities=10% Similarity=0.069 Sum_probs=125.5
Q ss_pred CeEEEEEcCCCCEEEEEeCC------------CcEEEEECCCC---eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 004885 557 KVESCHFSPDGKLLATGGHD------------KKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 621 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~D------------g~V~IWdl~~~---~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtI 621 (725)
.+.+++|+|||++|++++.+ +.|.+||+.++ +.+..+. +...+.+++|+|+++ +++++. .|
T Consensus 93 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i 168 (349)
T 1jmx_B 93 SMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DI 168 (349)
T ss_dssp CSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SE
T ss_pred cccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEccC--cE
Confidence 37899999999999998865 89999999874 3334444 344688999999999 666543 49
Q ss_pred EEEECCCCCeeeEEEecCC-------------------------------------------------------------
Q 004885 622 RVWDTENPDYSLRTFTGHS------------------------------------------------------------- 640 (725)
Q Consensus 622 rvWDl~~~~~~l~~~~~h~------------------------------------------------------------- 640 (725)
.+||+.++. .+..+..+.
T Consensus 169 ~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (349)
T 1jmx_B 169 YKMDVKTGK-YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHT 247 (349)
T ss_dssp EEECTTTCC-EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEE
T ss_pred EEEeCCCCc-eeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEe
Confidence 999998876 344333221
Q ss_pred -------CCeEEEEEcc-CCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885 641 -------TTVMSLDFHP-SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE 712 (725)
Q Consensus 641 -------~~V~sl~fsP-~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~ 712 (725)
..+.+++|+| +++.++++ ++.|++||+.+++.+..+.....+.+++|+|++++|++++.++.|++||++
T Consensus 248 ~~~~~~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~ 324 (349)
T 1jmx_B 248 QEFADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 324 (349)
T ss_dssp EEEEECSSCEEEEEECSSCTTEEEEE---ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETT
T ss_pred cccccCCCcceeeEecCCCCCEEEEE---cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEecc
Confidence 1356778889 98855544 789999999999998888876778999999999999888889999999999
Q ss_pred CCeEEEEEeCC
Q 004885 713 TQVCRLKLQVS 723 (725)
Q Consensus 713 tg~~v~~l~GH 723 (725)
+++.+..++.+
T Consensus 325 ~~~~~~~~~~~ 335 (349)
T 1jmx_B 325 TLEKVKNIKLP 335 (349)
T ss_dssp TTEEEEEEECS
T ss_pred ccceeeeeecC
Confidence 99999988754
No 143
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.69 E-value=6.4e-16 Score=181.87 Aligned_cols=224 Identities=12% Similarity=0.018 Sum_probs=154.3
Q ss_pred CCCeeEEEEecCCCccccccCCccCCCCcEEEEeeC-CC-----cEEEecCCCCCCCCCccccccc-cC-----CCceee
Q 004885 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSL-DD-----NVESFLSPDDADPRDRVGRSAE-VG-----KGFTFT 546 (725)
Q Consensus 479 s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~-D~-----~V~vw~s~~~~~~~~~~~~~~~-~~-----~~~~~~ 546 (725)
...+..+.|+|||. ++++++. |+ .|.+|....+............ .. +.....
T Consensus 36 ~~~~~~~~~SpdG~---------------~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS---------------RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARR 100 (741)
T ss_dssp CCCCEEEEECTTSS---------------EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------
T ss_pred CCCCCCceEecCCC---------------EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhh
Confidence 44578899999997 7787777 87 7899966544211110000000 00 000000
Q ss_pred eEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004885 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (725)
Q Consensus 547 ~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~--~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvW 624 (725)
+...+. ....|.+++|||||++|++++. +.|++||+.++. .+..+..|...+.+++|+||+++|++++ ++.|++|
T Consensus 101 ~~~~~~-~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~ 177 (741)
T 2ecf_A 101 ERQRIA-AMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVI 177 (741)
T ss_dssp -------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEE
T ss_pred hhhhhc-cccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEE
Confidence 000000 0134889999999999999886 899999998872 3446777888999999999999999887 5689999
Q ss_pred ECCCCCeeeEEEecCCCC----------------eEEEEEccCCCeEEEEEeCCC-------------------------
Q 004885 625 DTENPDYSLRTFTGHSTT----------------VMSLDFHPSKEDLLCSCDNNS------------------------- 663 (725)
Q Consensus 625 Dl~~~~~~l~~~~~h~~~----------------V~sl~fsP~g~~llaSgs~Dg------------------------- 663 (725)
|+.++. .......+... +.+++|+|+|+.++++.. |+
T Consensus 178 d~~~g~-~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~-d~~~~~~~~~~~~~p~~~~~~~~~~~~ 255 (741)
T 2ecf_A 178 DLASGR-QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI-DESPVPVQKRYEVYADRTDVIEQRYPA 255 (741)
T ss_dssp ETTTTE-EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE-ECTTSCEEEEEEECSSCEEEEEEECCB
T ss_pred ecCCCC-EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE-cCCCCceEecCCCCCCcccceEeecCC
Confidence 998865 33333333322 478999999996665443 33
Q ss_pred --------cEEEEECCC-CeeEEEEe---cCCCeEEEEEecCCCEEEEEEc-----CCeEEEEECCCCeEEEEEeCC
Q 004885 664 --------EIRYWSINN-GSCAGVFK---CQSGATQMRFQPRLGRILAAAI-----ENYISILDVETQVCRLKLQVS 723 (725)
Q Consensus 664 --------~I~IwDl~t-~~~v~~~~---~~~~V~sv~fspdg~~Lla~s~-----Dg~V~IwDl~tg~~v~~l~GH 723 (725)
.|++||+.+ +++..... +...+..++| |||++|++++. +..|++||+.++++...+..|
T Consensus 256 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~ 331 (741)
T 2ecf_A 256 AGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHET 331 (741)
T ss_dssp TTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEE
T ss_pred CCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcC
Confidence 788999998 87655442 2456899999 99999988765 467999999999888777654
No 144
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.68 E-value=2.2e-16 Score=185.16 Aligned_cols=203 Identities=13% Similarity=0.072 Sum_probs=148.3
Q ss_pred eeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC---Ce
Q 004885 482 KSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS---KV 558 (725)
Q Consensus 482 ~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~---~V 558 (725)
...+.|+||+. ++++ +.|++|++|....+ +....+..|.. .|
T Consensus 19 ~~~~~~spdg~---------------~~~~-~~dg~i~~~d~~~g-------------------~~~~~~~~~~~~~~~v 63 (723)
T 1xfd_A 19 DPEAKWISDTE---------------FIYR-EQKGTVRLWNVETN-------------------TSTVLIEGKKIESLRA 63 (723)
T ss_dssp CCCCCBSSSSC---------------BCCC-CSSSCEEEBCGGGC-------------------CCEEEECTTTTTTTTC
T ss_pred ccccEEcCCCc---------------EEEE-eCCCCEEEEECCCC-------------------cEEEEecccccccccc
Confidence 34567888775 4544 57889999943222 22344455554 49
Q ss_pred EEEEEcCCCCEEEEEeCC---------CcEEEEECCCCeEEEEe---ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004885 559 ESCHFSPDGKLLATGGHD---------KKAVLWCTESFTVKSTL---EEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (725)
Q Consensus 559 ~~i~fSpdg~~LaSgs~D---------g~V~IWdl~~~~~i~~l---~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl 626 (725)
.+++|||||++|++++.+ +.|++||+.+++. ..+ .+|...+.+++|+||+++|+.++. +.|++||+
T Consensus 64 ~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~ 141 (723)
T 1xfd_A 64 IRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAH 141 (723)
T ss_dssp SEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESS
T ss_pred ceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEEC
Confidence 999999999999999875 7788999998775 333 344556899999999999999885 79999999
Q ss_pred CCCCeeeEEEecCCCC------------------eEEEEEccCCCeEEEEEeCC--------------------------
Q 004885 627 ENPDYSLRTFTGHSTT------------------VMSLDFHPSKEDLLCSCDNN-------------------------- 662 (725)
Q Consensus 627 ~~~~~~l~~~~~h~~~------------------V~sl~fsP~g~~llaSgs~D-------------------------- 662 (725)
.++. .......+... +.+++|+|+|+.++++...+
T Consensus 142 ~~g~-~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (723)
T 1xfd_A 142 VGKQ-AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK 220 (723)
T ss_dssp SSSC-CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred CCCc-eEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCC
Confidence 9876 44444443333 37899999999665444321
Q ss_pred -------CcEEEEECCCCeeEEEEec-------CCCeEEEEEecCCCEEEEEEc----CCeEEEEECCCCeEEEEEeC
Q 004885 663 -------SEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRLGRILAAAI----ENYISILDVETQVCRLKLQV 722 (725)
Q Consensus 663 -------g~I~IwDl~t~~~v~~~~~-------~~~V~sv~fspdg~~Lla~s~----Dg~V~IwDl~tg~~v~~l~G 722 (725)
..|++||+.++++...+.. ...+.+++|+|||++|++... +..|++||+.++++...+..
T Consensus 221 ~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~ 298 (723)
T 1xfd_A 221 AGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED 298 (723)
T ss_dssp TTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE
T ss_pred CCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe
Confidence 1799999998886555543 345889999999988766654 25799999999988776654
No 145
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.67 E-value=7.5e-15 Score=153.71 Aligned_cols=191 Identities=13% Similarity=0.119 Sum_probs=144.0
Q ss_pred cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEec-CCCC-CeEEEEEcCCCCEEE-EEeCCCcEEEEE
Q 004885 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTS-KVESCHFSPDGKLLA-TGGHDKKAVLWC 583 (725)
Q Consensus 507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~H~~-~V~~i~fSpdg~~La-Sgs~Dg~V~IWd 583 (725)
.++++++.|+.|.+|+.... +.+..+. ++.. .+.+++|+|++++++ +++.++.|.+||
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~-------------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 62 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM-------------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT-------------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cEEEEcCCCCeEEEEECCCC-------------------cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEE
Confidence 47889999999999944222 2333333 2222 488999999998664 555678999999
Q ss_pred CCCCeEEEEecc-C----CCCeEEEEEcCCCCEEEEEe------------CCCeEEEEECCCCCeeeEEEecCCCCeEEE
Q 004885 584 TESFTVKSTLEE-H----TQWITDVRFSPSLSRLATSS------------ADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (725)
Q Consensus 584 l~~~~~i~~l~~-H----~~~V~~IafsPd~~~Lasgs------------~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl 646 (725)
+.+++.+..+.. + ...+.+++|+|++++|++++ .++.|.+||+.++. .+..+.. ...+.++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-RRKAFEA-PRQITML 140 (337)
T ss_dssp TTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-EEEEEEC-CSSCCCE
T ss_pred CCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCc-EEEEEeC-CCCccee
Confidence 999888776653 2 22678899999999998886 57999999998876 4555543 4567889
Q ss_pred EEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC--------------------------------------------
Q 004885 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-------------------------------------------- 682 (725)
Q Consensus 647 ~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~-------------------------------------------- 682 (725)
+|+|+++.++++ ++.|++||+.+++.+..+...
T Consensus 141 ~~s~dg~~l~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
T 1pby_B 141 AWARDGSKLYGL---GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAY 217 (337)
T ss_dssp EECTTSSCEEEE---SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGE
T ss_pred EECCCCCEEEEe---CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeecccccccccccccc
Confidence 999999866654 578999999988776554321
Q ss_pred -----------------------CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885 683 -----------------------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVS 723 (725)
Q Consensus 683 -----------------------~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH 723 (725)
..+.+++|+|++++++++ ++.|++||+++++.+..+..+
T Consensus 218 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~ 279 (337)
T 1pby_B 218 RTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP 279 (337)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS
T ss_pred ccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC
Confidence 123468999999998887 799999999999998887643
No 146
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.67 E-value=4.1e-14 Score=150.56 Aligned_cols=163 Identities=9% Similarity=0.101 Sum_probs=119.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeEE--EEeccC-CCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCC-
Q 004885 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVK--STLEEH-TQWITDVRFSPSLSRLATS-SADRTVRVWDTEN- 628 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~-~~~~i--~~l~~H-~~~V~~IafsPd~~~Lasg-s~DgtIrvWDl~~- 628 (725)
...+.+++|+|||+++++...++.|++|++. +++.. ..+..+ ...+..++|+|++++|+++ ..++.|++|+++.
T Consensus 140 ~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~ 219 (347)
T 3hfq_A 140 GSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ 219 (347)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred CCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 3458999999999966666678899999998 45432 222222 3467889999999976664 5688999999885
Q ss_pred -CCe-eeEEEecCC------CCeEEEEEccCCCeEEEEEeCCCcEEEEECCC---CeeEEEEec-CCCeEEEEEecCCCE
Q 004885 629 -PDY-SLRTFTGHS------TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---GSCAGVFKC-QSGATQMRFQPRLGR 696 (725)
Q Consensus 629 -~~~-~l~~~~~h~------~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t---~~~v~~~~~-~~~V~sv~fspdg~~ 696 (725)
+.. .+..+.... ..+..++|+|+|+++++++..++.|.+||+.. ...+..+.. ...+..++|+|+|++
T Consensus 220 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~ 299 (347)
T 3hfq_A 220 TGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAF 299 (347)
T ss_dssp TTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSE
T ss_pred CCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCE
Confidence 321 122333222 34889999999998888888899999999973 244455554 446899999999999
Q ss_pred EEEEEcC-CeEEEE--ECCCCeEE
Q 004885 697 ILAAAIE-NYISIL--DVETQVCR 717 (725)
Q Consensus 697 Lla~s~D-g~V~Iw--Dl~tg~~v 717 (725)
|++++.+ +.|.+| |.++|+..
T Consensus 300 l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 300 VVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEETTTTEEEEEEECTTTCCEE
T ss_pred EEEEEcCCCcEEEEEEeCCCCeEE
Confidence 9888875 899999 55666433
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.65 E-value=2.4e-14 Score=152.34 Aligned_cols=178 Identities=13% Similarity=0.154 Sum_probs=126.9
Q ss_pred eeEEEecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCC-C--eEEEEecc---------CCCCeEEEEEcCCCCEE
Q 004885 546 TEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTES-F--TVKSTLEE---------HTQWITDVRFSPSLSRL 612 (725)
Q Consensus 546 ~~~~~l~~H~~~V~~i~fSpdg~~LaSgs-~Dg~V~IWdl~~-~--~~i~~l~~---------H~~~V~~IafsPd~~~L 612 (725)
+.+..+..+...+.+++|+|||++|++++ .++.|.+|++.. + ..+..+.. +...+.+++|+|+++++
T Consensus 76 ~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~ 155 (347)
T 3hfq_A 76 HKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLA 155 (347)
T ss_dssp EEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEE
T ss_pred EEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEE
Confidence 44455556777899999999999888887 679999999963 2 23333321 12348899999999966
Q ss_pred EEEeCCCeEEEEECC-CCCe-eeEEEecC-CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC--CeeE--EEEec-C--
Q 004885 613 ATSSADRTVRVWDTE-NPDY-SLRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--GSCA--GVFKC-Q-- 682 (725)
Q Consensus 613 asgs~DgtIrvWDl~-~~~~-~l~~~~~h-~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t--~~~v--~~~~~-~-- 682 (725)
++...++.|++||+. ++.. .+..+..+ ...+..++|+|+|+++++++..++.|++|+++. ++.. ..+.. .
T Consensus 156 v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~ 235 (347)
T 3hfq_A 156 VIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPAD 235 (347)
T ss_dssp EEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTT
T ss_pred EEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCC
Confidence 666668899999998 3331 11222222 336788999999998887788889999999874 5432 23322 1
Q ss_pred ----CCeEEEEEecCCCEEEEE-EcCCeEEEEECC---CCeEEEEEeCC
Q 004885 683 ----SGATQMRFQPRLGRILAA-AIENYISILDVE---TQVCRLKLQVS 723 (725)
Q Consensus 683 ----~~V~sv~fspdg~~Lla~-s~Dg~V~IwDl~---tg~~v~~l~GH 723 (725)
..+..++|+|+|++|+++ ..++.|.+||+. +.+.+..+..|
T Consensus 236 ~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~ 284 (347)
T 3hfq_A 236 YTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTE 284 (347)
T ss_dssp CCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECS
T ss_pred CCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecC
Confidence 348889999999988655 458999999997 33666666553
No 148
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.64 E-value=3e-15 Score=176.09 Aligned_cols=206 Identities=8% Similarity=0.030 Sum_probs=151.8
Q ss_pred eeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEE
Q 004885 482 KSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESC 561 (725)
Q Consensus 482 ~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i 561 (725)
+..+.|+||+. +|+.++. +.|.+|....+... ....+..|...+.++
T Consensus 111 v~~~~~SpDg~---------------~l~~~~~-~~i~~~d~~~~~~~-----------------~~~~l~~~~~~~~~~ 157 (741)
T 2ecf_A 111 IVDYQWSPDAQ---------------RLLFPLG-GELYLYDLKQEGKA-----------------AVRQLTHGEGFATDA 157 (741)
T ss_dssp SCCCEECTTSS---------------EEEEEET-TEEEEEESSSCSTT-----------------SCCBCCCSSSCEEEE
T ss_pred cceeEECCCCC---------------EEEEEeC-CcEEEEECCCCCcc-----------------eEEEcccCCcccccc
Confidence 45678888876 6666665 88999955332100 112344567789999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCC----------------eEEEEEcCCCCEEEEEeCCC------
Q 004885 562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----------------ITDVRFSPSLSRLATSSADR------ 619 (725)
Q Consensus 562 ~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~----------------V~~IafsPd~~~Lasgs~Dg------ 619 (725)
+|||||++|++++ ++.|++||+.+++.......+... +.+++|+||+++|++++.|+
T Consensus 158 ~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~ 236 (741)
T 2ecf_A 158 KLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQ 236 (741)
T ss_dssp EECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEE
T ss_pred cCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceE
Confidence 9999999999987 569999999988776655544432 47899999999999987765
Q ss_pred ---------------------------eEEEEECCC-CCeeeEEEe--cCCCCeEEEEEccCCCeEEEEEe----CCCcE
Q 004885 620 ---------------------------TVRVWDTEN-PDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCD----NNSEI 665 (725)
Q Consensus 620 ---------------------------tIrvWDl~~-~~~~l~~~~--~h~~~V~sl~fsP~g~~llaSgs----~Dg~I 665 (725)
.|++||+.+ +. ...... .|...+.+++| |+|+.+++++. .+..|
T Consensus 237 ~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i 314 (741)
T 2ecf_A 237 KRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQ-TQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDL 314 (741)
T ss_dssp EEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCC-CEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEE
T ss_pred ecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCc-eEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEE
Confidence 889999988 76 333332 47778999999 99997776654 35679
Q ss_pred EEEECCCCeeEEEEecCC-----CeEEEEEecCCCEEEEEEcCCeEEEEECC-CCeEEEEEeCCC
Q 004885 666 RYWSINNGSCAGVFKCQS-----GATQMRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQVSH 724 (725)
Q Consensus 666 ~IwDl~t~~~v~~~~~~~-----~V~sv~fspdg~~Lla~s~Dg~V~IwDl~-tg~~v~~l~GH~ 724 (725)
++||+.++++...+.... .+..++|+|||+.+++++.|+.++||.+. +++ +..+.+|.
T Consensus 315 ~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~ 378 (741)
T 2ecf_A 315 VEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGN 378 (741)
T ss_dssp EEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSS
T ss_pred EEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecc
Confidence 999999998887776532 45689999999977777778877777665 344 66666553
No 149
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.64 E-value=2.8e-14 Score=150.40 Aligned_cols=194 Identities=11% Similarity=0.068 Sum_probs=144.2
Q ss_pred CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC-CCeEEEEEcCCCCEEE-EEeCCCcEE
Q 004885 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLA-TGGHDKKAV 580 (725)
Q Consensus 503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~-~~V~~i~fSpdg~~La-Sgs~Dg~V~ 580 (725)
.....++++++.++.|.+|+.... +.+..+..+. ..+.+++|+|++++++ ++..++.|.
T Consensus 8 ~~~~~~~v~~~~~~~v~~~d~~~~-------------------~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~ 68 (349)
T 1jmx_B 8 KAGHEYMIVTNYPNNLHVVDVASD-------------------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIY 68 (349)
T ss_dssp CTTCEEEEEEETTTEEEEEETTTT-------------------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEE
T ss_pred cCCCEEEEEeCCCCeEEEEECCCC-------------------cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEE
Confidence 344568899999999999944222 2333333332 2578999999998665 555789999
Q ss_pred EEECCCCeEEEEeccCC------CCeEEEEEcCCCCEEEEEeCC------------CeEEEEECCCCCe--eeEEEecCC
Q 004885 581 LWCTESFTVKSTLEEHT------QWITDVRFSPSLSRLATSSAD------------RTVRVWDTENPDY--SLRTFTGHS 640 (725)
Q Consensus 581 IWdl~~~~~i~~l~~H~------~~V~~IafsPd~~~Lasgs~D------------gtIrvWDl~~~~~--~l~~~~~h~ 640 (725)
+||+.+++.+..+..+. ..+.+++|+|++++|++++.+ +.|.+||+.++.. .+..+.. .
T Consensus 69 ~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~ 147 (349)
T 1jmx_B 69 GIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-P 147 (349)
T ss_dssp EEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-C
T ss_pred EEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-C
Confidence 99999998887765332 237899999999999998865 8999999987431 2334443 3
Q ss_pred CCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC-------------------------------------
Q 004885 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS------------------------------------- 683 (725)
Q Consensus 641 ~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~------------------------------------- 683 (725)
..+.+++|+|+++ +++ ++ +.|++||+.+++.+..+....
T Consensus 148 ~~~~~~~~s~dg~-l~~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 223 (349)
T 1jmx_B 148 RQVYLMRAADDGS-LYV-AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDK 223 (349)
T ss_dssp SSCCCEEECTTSC-EEE-ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC----
T ss_pred CcccceeECCCCc-EEE-cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCc
Confidence 4688999999998 665 33 449999999988776664321
Q ss_pred --------------------------------CeEEEEEec-CCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885 684 --------------------------------GATQMRFQP-RLGRILAAAIENYISILDVETQVCRLKLQV 722 (725)
Q Consensus 684 --------------------------------~V~sv~fsp-dg~~Lla~s~Dg~V~IwDl~tg~~v~~l~G 722 (725)
.+..++|+| ++++++++ ++.|.+||+++++.+..+..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~ 293 (349)
T 1jmx_B 224 QDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL 293 (349)
T ss_dssp ---CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC
T ss_pred CCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC
Confidence 345677789 99988877 88999999999999888764
No 150
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.61 E-value=3.2e-14 Score=166.58 Aligned_cols=162 Identities=15% Similarity=0.200 Sum_probs=127.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCC-eEEEEecc-CCC---CeEEEEEcC--CCCEEEEEeCCCe
Q 004885 553 ASTSKVESCHFSPDGKLLATGGHDK-----KAVLWCTESF-TVKSTLEE-HTQ---WITDVRFSP--SLSRLATSSADRT 620 (725)
Q Consensus 553 ~H~~~V~~i~fSpdg~~LaSgs~Dg-----~V~IWdl~~~-~~i~~l~~-H~~---~V~~IafsP--d~~~Lasgs~Dgt 620 (725)
.|...|.+++|+|||++|++++.|+ .|++||+.++ .....+.. +.. .+.+++|+| ++++|++++.|+.
T Consensus 255 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~ 334 (706)
T 2z3z_A 255 PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGW 334 (706)
T ss_dssp CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSS
T ss_pred CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCc
Confidence 5677899999999999999988776 9999999998 43333322 222 346789999 9999999999999
Q ss_pred EEEEECCCCCeeeEEEecCCCCeEE-EEEccCCCeEEEEEeCCC----cEEEEECCCCeeEEEEecCCCeEEEEEecCCC
Q 004885 621 VRVWDTENPDYSLRTFTGHSTTVMS-LDFHPSKEDLLCSCDNNS----EIRYWSINNGSCAGVFKCQSGATQMRFQPRLG 695 (725)
Q Consensus 621 IrvWDl~~~~~~l~~~~~h~~~V~s-l~fsP~g~~llaSgs~Dg----~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~ 695 (725)
++||+++.....+..+..+...+.+ ++|+|+++.+++++..++ .|+.||+.++. +..+.+...+.+++|+|+|+
T Consensus 335 ~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~spdg~ 413 (706)
T 2z3z_A 335 NHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLTPESGMHRTQLSPDGS 413 (706)
T ss_dssp CEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESCCSSSEEEEEECTTSS
T ss_pred cEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceeccCCCceEEEEECCCCC
Confidence 9999887333367778888777877 799999998887877765 67778887765 44455567799999999999
Q ss_pred EEEEEEcC----CeEEEEECCCCe
Q 004885 696 RILAAAIE----NYISILDVETQV 715 (725)
Q Consensus 696 ~Lla~s~D----g~V~IwDl~tg~ 715 (725)
+|++++.+ +.|++||+.+++
T Consensus 414 ~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 414 AIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEEEEEECSSCSCEEEEEESSSCE
T ss_pred EEEEEecCCCCCcEEEEEECCCCe
Confidence 98877554 569999999887
No 151
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.61 E-value=1.6e-13 Score=146.86 Aligned_cols=165 Identities=14% Similarity=0.129 Sum_probs=120.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCe-------E------EEEeccCCCCeEEEEEcCCCCEEEEEe-CC
Q 004885 554 STSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFT-------V------KSTLEEHTQWITDVRFSPSLSRLATSS-AD 618 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSgs-~Dg~V~IWdl~~~~-------~------i~~l~~H~~~V~~IafsPd~~~Lasgs-~D 618 (725)
+...+.+++|+|||++|++++ .++.|++|+++... . ......+...+..++|+|++++|++++ .+
T Consensus 153 ~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 232 (361)
T 3scy_A 153 TMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIG 232 (361)
T ss_dssp SSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred CCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCC
Confidence 344578999999999776655 48899999987533 1 122233456688999999999888777 68
Q ss_pred CeEEEEECCCCCe-eeEEEe---cCCCCeEEEEEccCCCeEEEEEeC-CCcEEEEECC--CCe--eEEEEecCCCeEEEE
Q 004885 619 RTVRVWDTENPDY-SLRTFT---GHSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSIN--NGS--CAGVFKCQSGATQMR 689 (725)
Q Consensus 619 gtIrvWDl~~~~~-~l~~~~---~h~~~V~sl~fsP~g~~llaSgs~-Dg~I~IwDl~--t~~--~v~~~~~~~~V~sv~ 689 (725)
+.|.+||+.++.. .+..+. .+...+.+++|+|+|++++++... ++.|.+|++. +++ .+..+.....+..++
T Consensus 233 ~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~ 312 (361)
T 3scy_A 233 GTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFI 312 (361)
T ss_dssp CEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEE
T ss_pred CeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEE
Confidence 9999999986541 122222 233457899999999977777766 6899999996 454 344444445788999
Q ss_pred EecCCCEEEEEE-cCCeEEEE--ECCCCeEEE
Q 004885 690 FQPRLGRILAAA-IENYISIL--DVETQVCRL 718 (725)
Q Consensus 690 fspdg~~Lla~s-~Dg~V~Iw--Dl~tg~~v~ 718 (725)
|+|+|++|++++ .++.|.|| |.+++++..
T Consensus 313 ~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~ 344 (361)
T 3scy_A 313 ITPNGKYLLVACRDTNVIQIFERDQATGLLTD 344 (361)
T ss_dssp ECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred ECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence 999999998888 46899995 556776554
No 152
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.60 E-value=1.4e-14 Score=169.53 Aligned_cols=205 Identities=13% Similarity=0.081 Sum_probs=147.8
Q ss_pred CCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeE
Q 004885 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (725)
Q Consensus 480 ~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~ 559 (725)
..+..+.|+|+ . .++++ .|+.|.+|+...+ ....+..+...+.
T Consensus 82 ~~v~~~~~spd-~--------------~~~~~--~~~~i~~~d~~~~--------------------~~~~l~~~~~~~~ 124 (706)
T 2z3z_A 82 FPSFRTLDAGR-G--------------LVVLF--TQGGLVGFDMLAR--------------------KVTYLFDTNEETA 124 (706)
T ss_dssp CCCEEEEETTT-T--------------EEEEE--ETTEEEEEETTTT--------------------EEEEEECCTTCCT
T ss_pred cCceeEEECCC-C--------------eEEEE--ECCEEEEEECCCC--------------------ceEEccCCccccc
Confidence 35677888886 3 23443 4589999954222 1223445677799
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCC-----CeEEEEeccCCCC--------------eEEEEEcCCCCEEEEEe----
Q 004885 560 SCHFSPDGKLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQW--------------ITDVRFSPSLSRLATSS---- 616 (725)
Q Consensus 560 ~i~fSpdg~~LaSgs~Dg~V~IWdl~~-----~~~i~~l~~H~~~--------------V~~IafsPd~~~Lasgs---- 616 (725)
+++|||||++|+++ .|+.|++||+.+ ++.......+... +.+++|+||+++|++++
T Consensus 125 ~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~ 203 (706)
T 2z3z_A 125 SLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQS 203 (706)
T ss_dssp TCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECT
T ss_pred CCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCC
Confidence 99999999999985 689999999988 7766544443333 48999999999999987
Q ss_pred -----------------------------CCCeEEEEECCCCCeeeEEE--ecCCCCeEEEEEccCCCeEEEEEeCCC--
Q 004885 617 -----------------------------ADRTVRVWDTENPDYSLRTF--TGHSTTVMSLDFHPSKEDLLCSCDNNS-- 663 (725)
Q Consensus 617 -----------------------------~DgtIrvWDl~~~~~~l~~~--~~h~~~V~sl~fsP~g~~llaSgs~Dg-- 663 (725)
.+..|++||+.++. ..... ..|...+.+++|+|+|+.++++ +.++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~-~~~~~~~~~~~~~~~~~~~spdg~~l~~~-~~~~~~ 281 (706)
T 2z3z_A 204 MVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK-TVYLQTGEPKEKFLTNLSWSPDENILYVA-EVNRAQ 281 (706)
T ss_dssp TSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE-EEECCCCSCTTCEEEEEEECTTSSEEEEE-EECTTS
T ss_pred CCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc-eEeeccCCCCceeEeeEEEECCCCEEEEE-EeCCCC
Confidence 44689999998876 33322 2466779999999999965544 4344
Q ss_pred ---cEEEEECCCC-eeEEEEec--CC---CeEEEEEec--CCCEEEEEEcCCeEEEEECC-CCeEEEEEeCCC
Q 004885 664 ---EIRYWSINNG-SCAGVFKC--QS---GATQMRFQP--RLGRILAAAIENYISILDVE-TQVCRLKLQVSH 724 (725)
Q Consensus 664 ---~I~IwDl~t~-~~v~~~~~--~~---~V~sv~fsp--dg~~Lla~s~Dg~V~IwDl~-tg~~v~~l~GH~ 724 (725)
.|++||+.++ .+...+.. .. .+.+++|+| +|++++++..|+.++||++. ++..+..+.+|.
T Consensus 282 ~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~ 354 (706)
T 2z3z_A 282 NECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGE 354 (706)
T ss_dssp CEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSS
T ss_pred CeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCC
Confidence 8999999998 44333322 22 246789999 98888878788999999886 677777776653
No 153
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.58 E-value=4.3e-14 Score=173.87 Aligned_cols=164 Identities=13% Similarity=0.095 Sum_probs=137.8
Q ss_pred CCCCeEEEEEc-CCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCC-CeEEEEEcCCCCEEEEEeCCCeEE-EEECCCCC
Q 004885 554 STSKVESCHFS-PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSPSLSRLATSSADRTVR-VWDTENPD 630 (725)
Q Consensus 554 H~~~V~~i~fS-pdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~-~V~~IafsPd~~~Lasgs~DgtIr-vWDl~~~~ 630 (725)
|...|.+++|+ |||++|++++ ++.|++|++.++... .+..|.. .+.+++|+ +++.|++++.+..|. +||+..+.
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~ 370 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK 370 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC
T ss_pred cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC
Confidence 56679999999 9999999887 789999999887654 4667777 89999999 999999999888888 99998765
Q ss_pred eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeEEEEEecCCCEEEEEEcCC-----
Q 004885 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIEN----- 704 (725)
Q Consensus 631 ~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~-~~~~V~sv~fspdg~~Lla~s~Dg----- 704 (725)
...+.+|...+.+++|+|+|+ .|++++.++.|++||+.++++...+. +...+.+++|+|||++|++++.++
T Consensus 371 --~~~l~~~~~~~~~~~~SpDG~-~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~ 447 (1045)
T 1k32_A 371 --AEKFEENLGNVFAMGVDRNGK-FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETD 447 (1045)
T ss_dssp --EEECCCCCCSEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTC
T ss_pred --ceEecCCccceeeeEECCCCC-EEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCcccccc
Confidence 344457888999999999998 55577889999999999999888774 466789999999999998887654
Q ss_pred -----eEEEEECCCCeEEEEEeCCC
Q 004885 705 -----YISILDVETQVCRLKLQVSH 724 (725)
Q Consensus 705 -----~V~IwDl~tg~~v~~l~GH~ 724 (725)
.|++||+.+++ +..+.+|.
T Consensus 448 ~~~~~~i~l~d~~~g~-~~~l~~~~ 471 (1045)
T 1k32_A 448 GYVMQAIHVYDMEGRK-IFAATTEN 471 (1045)
T ss_dssp SCCEEEEEEEETTTTE-EEECSCSS
T ss_pred CCCCCeEEEEECCCCc-EEEeeCCC
Confidence 89999999988 66666553
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.57 E-value=6.9e-13 Score=142.00 Aligned_cols=199 Identities=10% Similarity=0.042 Sum_probs=136.0
Q ss_pred CcEEEEeeCC----CcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEe-CCCcEE
Q 004885 506 DRFVDDGSLD----DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAV 580 (725)
Q Consensus 506 ~~~lasGs~D----~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs-~Dg~V~ 580 (725)
.++|++++.+ +.|.+|..... ...+..+..+..+......+++ ++++|++++ .++.|.
T Consensus 61 g~~l~~~~~~~~~~~~v~~~~~~~~---------------~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~ 123 (361)
T 3scy_A 61 GKFVYSVNEFSKDQAAVSAFAFDKE---------------KGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSIT 123 (361)
T ss_dssp SSEEEEEECCSSTTCEEEEEEEETT---------------TTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEE
T ss_pred CCEEEEEEccCCCCCcEEEEEEeCC---------------CCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEE
Confidence 4477777765 78888844221 1223445555556667788888 888777776 578999
Q ss_pred EEECCCCeEEEE------ecc--------CCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCe------e------e
Q 004885 581 LWCTESFTVKST------LEE--------HTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDY------S------L 633 (725)
Q Consensus 581 IWdl~~~~~i~~------l~~--------H~~~V~~IafsPd~~~Lasgs-~DgtIrvWDl~~~~~------~------l 633 (725)
+|++.....+.. ..+ +...+.+++|+|++++|++++ .++.|++|++..... . .
T Consensus 124 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~ 203 (361)
T 3scy_A 124 VFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPE 203 (361)
T ss_dssp EEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEE
T ss_pred EEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccc
Confidence 999975332211 111 123458899999999776665 488999999876542 1 1
Q ss_pred EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeE--EEEec----CCCeEEEEEecCCCEEEEEEcC--Ce
Q 004885 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--GVFKC----QSGATQMRFQPRLGRILAAAIE--NY 705 (725)
Q Consensus 634 ~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v--~~~~~----~~~V~sv~fspdg~~Lla~s~D--g~ 705 (725)
.....+...+..++|+|+|+.+++++..++.|++||+.++... ..+.. ...+..++|+|||++|+++..+ +.
T Consensus 204 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~ 283 (361)
T 3scy_A 204 AFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADG 283 (361)
T ss_dssp EEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCE
T ss_pred ceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCE
Confidence 2223345568899999999977777667899999999977653 22322 2347899999999998777665 89
Q ss_pred EEEEECC--CCe--EEEEEe
Q 004885 706 ISILDVE--TQV--CRLKLQ 721 (725)
Q Consensus 706 V~IwDl~--tg~--~v~~l~ 721 (725)
|.||++. +++ .+..+.
T Consensus 284 i~v~~~~~~~g~~~~~~~~~ 303 (361)
T 3scy_A 284 VAIFKVDETNGTLTKVGYQL 303 (361)
T ss_dssp EEEEEECTTTCCEEEEEEEE
T ss_pred EEEEEEcCCCCcEEEeeEec
Confidence 9999995 454 454443
No 155
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.57 E-value=2.7e-14 Score=167.27 Aligned_cols=200 Identities=10% Similarity=0.041 Sum_probs=141.6
Q ss_pred eeEEEEecCCCccccccCCccCCCCcEEEEeeCC---------CcEEEecCCCCCCCCCccccccccCCCceeeeEEEec
Q 004885 482 KSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLD---------DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP 552 (725)
Q Consensus 482 ~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D---------~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 552 (725)
+..+.|+|||. +|+.++.+ +.|.+|....+. ...+....
T Consensus 63 v~~~~~SpDg~---------------~l~~~~~~~~~~~~~~~~~i~~~d~~~~~-----------------~~~l~~~~ 110 (723)
T 1xfd_A 63 AIRYEISPDRE---------------YALFSYNVEPIYQHSYTGYYVLSKIPHGD-----------------PQSLDPPE 110 (723)
T ss_dssp CSEEEECTTSS---------------EEEEEESCCCCSSSCCCSEEEEEESSSCC-----------------CEECCCTT
T ss_pred cceEEECCCCC---------------EEEEEecCccceeecceeeEEEEECCCCc-----------------eEeccCCc
Confidence 67788888876 66666554 567788543321 11222233
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCe------------------EEEEEcCCCCEEEE
Q 004885 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI------------------TDVRFSPSLSRLAT 614 (725)
Q Consensus 553 ~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V------------------~~IafsPd~~~Las 614 (725)
+|...|.+++|||||++||+++. +.|++||+.+++.......+...+ .+++|+||+++|++
T Consensus 111 ~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~ 189 (723)
T 1xfd_A 111 VSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAY 189 (723)
T ss_dssp CCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEE
T ss_pred cccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEE
Confidence 56666899999999999999885 799999999887776665544333 78999999999998
Q ss_pred EeCCC----------------------------------eEEEEECCCCCeeeEEEecC------CCCeEEEEEccCCCe
Q 004885 615 SSADR----------------------------------TVRVWDTENPDYSLRTFTGH------STTVMSLDFHPSKED 654 (725)
Q Consensus 615 gs~Dg----------------------------------tIrvWDl~~~~~~l~~~~~h------~~~V~sl~fsP~g~~ 654 (725)
++.|+ .|++||+.++. +...+..+ ...+.+++|+|+|+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~~~~~~~~~~~SpDg~~ 268 (723)
T 1xfd_A 190 AAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT-HDLEMMPPDDPRMREYYITMVKWATSTKV 268 (723)
T ss_dssp EEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC-CCEECCCCCCGGGSSEEEEEEEESSSSEE
T ss_pred EEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc-eeEEeeCCccCCCccceeEEEEEeCCCeE
Confidence 87553 79999998876 34555543 567899999999984
Q ss_pred EEEEEeC---CCcEEEEECCCCeeEEEEec--CCCe----EEEEEecCCCEEEEE--EcCC------eEEEEE-CCCCe
Q 004885 655 LLCSCDN---NSEIRYWSINNGSCAGVFKC--QSGA----TQMRFQPRLGRILAA--AIEN------YISILD-VETQV 715 (725)
Q Consensus 655 llaSgs~---Dg~I~IwDl~t~~~v~~~~~--~~~V----~sv~fspdg~~Lla~--s~Dg------~V~IwD-l~tg~ 715 (725)
+++.... +..|++||+.++++...+.. ...+ ..++|+|||+.|+.+ ..++ .|.+|| ..+++
T Consensus 269 l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~ 347 (723)
T 1xfd_A 269 AVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS 347 (723)
T ss_dssp EEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSS
T ss_pred EEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCC
Confidence 4433332 35799999999988776643 2333 388999999977764 3466 577788 34443
No 156
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.56 E-value=6.2e-14 Score=172.51 Aligned_cols=195 Identities=8% Similarity=-0.020 Sum_probs=153.6
Q ss_pred CeeEEEEe-cCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC-Ce
Q 004885 481 SKSLLMFG-SDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS-KV 558 (725)
Q Consensus 481 ~~s~l~fs-~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~-~V 558 (725)
.+..+.|+ |++. .++.++ ++.|.+|....+ ....+..|.. .+
T Consensus 297 ~v~~~~~S~pdG~---------------~la~~~-~~~i~~~~~~~~--------------------~~~~~~~~~~~~~ 340 (1045)
T 1k32_A 297 SKFAEDFSPLDGD---------------LIAFVS-RGQAFIQDVSGT--------------------YVLKVPEPLRIRY 340 (1045)
T ss_dssp GGGEEEEEECGGG---------------CEEEEE-TTEEEEECTTSS--------------------BEEECSCCSCEEE
T ss_pred ccceeeecCCCCC---------------EEEEEE-cCEEEEEcCCCC--------------------ceEEccCCCcceE
Confidence 46678888 8775 555555 778888843211 1223556777 79
Q ss_pred EEEEEcCCCCEEEEEeCCCcEE-EEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEe
Q 004885 559 ESCHFSPDGKLLATGGHDKKAV-LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (725)
Q Consensus 559 ~~i~fSpdg~~LaSgs~Dg~V~-IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~ 637 (725)
.+++|+ ||+.|++++.+..|. +||+.+++.. .+.+|...+.+++|+|++++|++++.++.|++||+.++. ....+.
T Consensus 341 ~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~-~~~~~~ 417 (1045)
T 1k32_A 341 VRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK-PTVIER 417 (1045)
T ss_dssp EEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEEEE
T ss_pred EeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc-eEEecc
Confidence 999999 999999999888888 9999877654 444788899999999999999999999999999999887 566666
Q ss_pred cCCCCeEEEEEccCCCeEEEEEeCC---------CcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 004885 638 GHSTTVMSLDFHPSKEDLLCSCDNN---------SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 708 (725)
Q Consensus 638 ~h~~~V~sl~fsP~g~~llaSgs~D---------g~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~I 708 (725)
+|...|.+++|+|+|+++++++..+ +.|++||+.+++......+...+..++|+|||.+|++++.++.+.+
T Consensus 418 ~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~ 497 (1045)
T 1k32_A 418 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPS 497 (1045)
T ss_dssp CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCE
T ss_pred CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcC
Confidence 8989999999999999665554422 4899999998874333334566889999999999999999888888
Q ss_pred EECCCC
Q 004885 709 LDVETQ 714 (725)
Q Consensus 709 wDl~tg 714 (725)
|+....
T Consensus 498 ~~~~~~ 503 (1045)
T 1k32_A 498 PDRVVL 503 (1045)
T ss_dssp ECSSSS
T ss_pred cchhcc
Confidence 887644
No 157
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.55 E-value=1e-13 Score=158.94 Aligned_cols=201 Identities=9% Similarity=0.026 Sum_probs=139.8
Q ss_pred CCeeEEEEecCCCccccccCCccCCCCcEEEEeeC-CCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC-CC
Q 004885 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSL-DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SK 557 (725)
Q Consensus 480 ~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~-D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~-~~ 557 (725)
..+..+.|+|||. .|+.++. |+++++|... + .....+..|. ..
T Consensus 22 ~~~~~~~~~~DG~---------------~la~~s~~~g~~~lw~~~-~-------------------g~~~~lt~~~~~~ 66 (582)
T 3o4h_A 22 VEKYSLQGVVDGD---------------KLLVVGFSEGSVNAYLYD-G-------------------GETVKLNREPINS 66 (582)
T ss_dssp SCEEEEEEEETTT---------------EEEEEEEETTEEEEEEEE-T-------------------TEEEECCSSCCSE
T ss_pred cchheeecCCCCC---------------eEEEEEccCCceeEEEEc-C-------------------CCcEeeecccccc
Confidence 3578889999987 6676665 9999999531 1 1223344454 57
Q ss_pred eEEEEEcCCCCEEEEEeC---CCcEEEEECCC---CeEEEEeccCCCCeEEEEEcCCCCE-EEEEeCCCeEEEEECCCCC
Q 004885 558 VESCHFSPDGKLLATGGH---DKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPD 630 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~---Dg~V~IWdl~~---~~~i~~l~~H~~~V~~IafsPd~~~-Lasgs~DgtIrvWDl~~~~ 630 (725)
|.+++|+|| +++++++. +...+||.++. +... .+..+. .+..++|+|+++. +++++.++.+.+||+.++.
T Consensus 67 ~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~ 143 (582)
T 3o4h_A 67 VLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGG 143 (582)
T ss_dssp ECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTE
T ss_pred cccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCc
Confidence 999999999 77887775 45556655432 2222 443322 3446688887753 3444444455599998876
Q ss_pred eeeEEEecCCCCeEEEEEccCCCeEEEEEeCC----CcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCC--
Q 004885 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN-- 704 (725)
Q Consensus 631 ~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D----g~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg-- 704 (725)
+..... +.. .+++|+|+|+.++ +++.+ +.|++||+.++++.....+...+..++|+|||+.|+++..++
T Consensus 144 -~~~l~~-~~~--~~~~~spDG~~la-~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 218 (582)
T 3o4h_A 144 -LRELAR-LPG--FGFVSDIRGDLIA-GLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREA 218 (582)
T ss_dssp -EEEEEE-ESS--CEEEEEEETTEEE-EEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCE
T ss_pred -EEEeec-CCC--ceEEECCCCCEEE-EEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCee
Confidence 333333 333 7899999999554 44444 679999999988765444466789999999999999777788
Q ss_pred eEEEEECCCCeEEEEEeCCC
Q 004885 705 YISILDVETQVCRLKLQVSH 724 (725)
Q Consensus 705 ~V~IwDl~tg~~v~~l~GH~ 724 (725)
.|++||+.++++. .+.+|.
T Consensus 219 ~i~~~d~~~~~~~-~~~~~~ 237 (582)
T 3o4h_A 219 RLVTVDPRDGSVE-DLELPS 237 (582)
T ss_dssp EEEEECTTTCCEE-ECCCSC
T ss_pred EEEEEcCCCCcEE-EccCCC
Confidence 8999999999888 777764
No 158
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.54 E-value=1.3e-12 Score=141.03 Aligned_cols=193 Identities=9% Similarity=0.088 Sum_probs=131.4
Q ss_pred EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCE--EEEEe-----------
Q 004885 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKL--LATGG----------- 574 (725)
Q Consensus 508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~--LaSgs----------- 574 (725)
++++++.+ .|.+|..... + ....+.....+ +.+.+++|+|||++ +++++
T Consensus 53 ~l~~~~~~-~v~~~~~~~~---------------g-~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 53 NIYGAAMK-KWSSFAVKSP---------------T-EIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp EEEEEEBT-EEEEEEEEET---------------T-EEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred EEEEEccc-eEEEEEECCC---------------C-CEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence 77777777 8999944210 1 11111111111 23667999999994 55553
Q ss_pred --CCCcEEEEECC-CCeEEEEec----cCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECC-CCCee-eEEEe--cCCCC
Q 004885 575 --HDKKAVLWCTE-SFTVKSTLE----EHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTE-NPDYS-LRTFT--GHSTT 642 (725)
Q Consensus 575 --~Dg~V~IWdl~-~~~~i~~l~----~H~~~V~~IafsPd~~~Lasgs~-DgtIrvWDl~-~~~~~-l~~~~--~h~~~ 642 (725)
.++.+.+|+++ +++....+. .+...+.+++|+|++++|++++. ++.|++||+. ++... +..+. .|...
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~ 194 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDH 194 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCC
T ss_pred ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCC
Confidence 68999999997 465544333 24567999999999999888764 6799999998 55522 22333 24567
Q ss_pred eEEEEEccCCCeEEEEEeCCCcEEEEECC--CCeeEE---EEec---C----C-------CeEEEE-EecCCCEEEEEEc
Q 004885 643 VMSLDFHPSKEDLLCSCDNNSEIRYWSIN--NGSCAG---VFKC---Q----S-------GATQMR-FQPRLGRILAAAI 702 (725)
Q Consensus 643 V~sl~fsP~g~~llaSgs~Dg~I~IwDl~--t~~~v~---~~~~---~----~-------~V~sv~-fspdg~~Lla~s~ 702 (725)
+..++|+|+|+.+++++..++.|.+|+++ +++... .+.. . . .+..++ |+|||++|+++..
T Consensus 195 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~ 274 (365)
T 1jof_A 195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred CCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence 99999999999776666667899999875 565432 2221 1 2 478999 9999999887765
Q ss_pred C-C-----eEEEEECC-CCeEEE
Q 004885 703 E-N-----YISILDVE-TQVCRL 718 (725)
Q Consensus 703 D-g-----~V~IwDl~-tg~~v~ 718 (725)
+ + .|.+|++. ++++..
T Consensus 275 ~~~~~~~~~i~v~~~~~~g~~~~ 297 (365)
T 1jof_A 275 ANKFELQGYIAGFKLRDCGSIEK 297 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSCEEE
T ss_pred CCCCCCCCeEEEEEECCCCCEEE
Confidence 3 3 89999996 676543
No 159
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.53 E-value=9.7e-15 Score=171.52 Aligned_cols=199 Identities=14% Similarity=0.124 Sum_probs=135.5
Q ss_pred EEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC---CeEE
Q 004885 484 LLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS---KVES 560 (725)
Q Consensus 484 ~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~---~V~~ 560 (725)
.+.|+|++. +++++ .|+.|++|....+ .....+.+|.. .|.+
T Consensus 20 ~~~~s~dg~---------------~~~~~-~d~~i~~~~~~~g-------------------~~~~~~~~~~~~~~~~~~ 64 (719)
T 1z68_A 20 FPNWISGQE---------------YLHQS-ADNNIVLYNIETG-------------------QSYTILSNRTMKSVNASN 64 (719)
T ss_dssp CCEESSSSE---------------EEEEC-TTSCEEEEESSSC-------------------CEEEEECHHHHHTTTCSE
T ss_pred ccEECCCCe---------------EEEEc-CCCCEEEEEcCCC-------------------cEEEEEccccccccceee
Confidence 457777664 66655 5899999954333 12223333322 4899
Q ss_pred EEEcCCCCEEEEEeC---------CCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 004885 561 CHFSPDGKLLATGGH---------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (725)
Q Consensus 561 i~fSpdg~~LaSgs~---------Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~ 631 (725)
++|||||++|++++. |+.|++||+.+++.+... .....+.+++|+|||++|+.+. |+.|++||+.++.
T Consensus 65 ~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~- 141 (719)
T 1z68_A 65 YGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDP- 141 (719)
T ss_dssp EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS-CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSC-
T ss_pred EEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce-ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCC-
Confidence 999999999998876 789999999988762111 1135688999999999999886 7899999998876
Q ss_pred eeEE-EecCCCCe-----------------EEEEEccCCCeEEEEEeCCC------------------------------
Q 004885 632 SLRT-FTGHSTTV-----------------MSLDFHPSKEDLLCSCDNNS------------------------------ 663 (725)
Q Consensus 632 ~l~~-~~~h~~~V-----------------~sl~fsP~g~~llaSgs~Dg------------------------------ 663 (725)
+... ..++...| .+++|+|||+.++++...++
T Consensus 142 ~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~ 221 (719)
T 1z68_A 142 PFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKN 221 (719)
T ss_dssp CEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCC
T ss_pred cEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCC
Confidence 3322 22333222 48999999996654443221
Q ss_pred ---cEEEEECCCCeeE--EEE------e-cCCCeEEEEEecCCCEEEEEEcC----CeEEEEE----CCCCeEEEEE
Q 004885 664 ---EIRYWSINNGSCA--GVF------K-CQSGATQMRFQPRLGRILAAAIE----NYISILD----VETQVCRLKL 720 (725)
Q Consensus 664 ---~I~IwDl~t~~~v--~~~------~-~~~~V~sv~fspdg~~Lla~s~D----g~V~IwD----l~tg~~v~~l 720 (725)
.|++||+.+++++ ..+ . +...+.+++|+||+..+++.... ..|.+|| +.++++...+
T Consensus 222 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~ 298 (719)
T 1z68_A 222 PVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQ 298 (719)
T ss_dssp CEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGG
T ss_pred CeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEE
Confidence 7889999987753 111 1 23458999999996555543332 3489999 8888766555
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.52 E-value=1.9e-13 Score=156.72 Aligned_cols=146 Identities=13% Similarity=0.038 Sum_probs=122.3
Q ss_pred EEEEEcCCCCEEEEEeCC----CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC--eEEEEECCCCCee
Q 004885 559 ESCHFSPDGKLLATGGHD----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYS 632 (725)
Q Consensus 559 ~~i~fSpdg~~LaSgs~D----g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dg--tIrvWDl~~~~~~ 632 (725)
.+++|||||++|++++.| ..|++||+.+++.. .+..|...+..++|+||+++|+++..++ .|++||+.++. .
T Consensus 153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~-~ 230 (582)
T 3o4h_A 153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS-V 230 (582)
T ss_dssp CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC-E
T ss_pred ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc-E
Confidence 789999999999988877 78999999887755 6778889999999999999999888888 89999999887 4
Q ss_pred eEEEecCCCCeEEEE--------EccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCC
Q 004885 633 LRTFTGHSTTVMSLD--------FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN 704 (725)
Q Consensus 633 l~~~~~h~~~V~sl~--------fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg 704 (725)
. .+.+|...+..++ |+|+| .++++++.|+.+++|++ ++++.. ..+.|.+++|+ ++..+++++.+.
T Consensus 231 ~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~~~~~--~~~~v~~~~~s-dg~~l~~~s~~~ 303 (582)
T 3o4h_A 231 E-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID--GERVEA--PQGNHGRVVLW-RGKLVTSHTSLS 303 (582)
T ss_dssp E-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--TEEECC--CSSEEEEEEEE-TTEEEEEEEETT
T ss_pred E-EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--CCeecc--CCCceEEEEec-CCEEEEEEcCCC
Confidence 4 6777777777777 99999 68889999999999999 766552 24678899999 888888877764
Q ss_pred ---eEEEEECCC
Q 004885 705 ---YISILDVET 713 (725)
Q Consensus 705 ---~V~IwDl~t 713 (725)
.|.+||+.+
T Consensus 304 ~p~~l~~~d~~~ 315 (582)
T 3o4h_A 304 TPPRIVSLPSGE 315 (582)
T ss_dssp EEEEEEEETTCC
T ss_pred CCCeEEEEcCCC
Confidence 477777654
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.49 E-value=7.6e-12 Score=134.96 Aligned_cols=161 Identities=12% Similarity=0.097 Sum_probs=118.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECC-CCeEE--EEec--cCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEC
Q 004885 554 STSKVESCHFSPDGKLLATGGH-DKKAVLWCTE-SFTVK--STLE--EHTQWITDVRFSPSLSRLATSSA-DRTVRVWDT 626 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSgs~-Dg~V~IWdl~-~~~~i--~~l~--~H~~~V~~IafsPd~~~Lasgs~-DgtIrvWDl 626 (725)
+...+.+++|+|||++|++++. ++.|++||++ +++.. ..+. .|...+..++|+|++++|++++. +++|.+|++
T Consensus 143 ~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~ 222 (365)
T 1jof_A 143 ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVI 222 (365)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEE
Confidence 5567999999999998887764 6799999998 66543 2333 24567999999999999988775 789999987
Q ss_pred C--CCCee--eEEEe-------cCCC------CeEEEE-EccCCCeEEEEEeCCC-----cEEEEECC-CCeeEEE---E
Q 004885 627 E--NPDYS--LRTFT-------GHST------TVMSLD-FHPSKEDLLCSCDNNS-----EIRYWSIN-NGSCAGV---F 679 (725)
Q Consensus 627 ~--~~~~~--l~~~~-------~h~~------~V~sl~-fsP~g~~llaSgs~Dg-----~I~IwDl~-t~~~v~~---~ 679 (725)
+ ++... ...+. +|.. .+..++ |+|+|+.++++...+. .|.+|++. +++.... +
T Consensus 223 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~ 302 (365)
T 1jof_A 223 DPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS 302 (365)
T ss_dssp CTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE
T ss_pred eCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeee
Confidence 6 34321 11222 1222 488999 9999997766554333 89999996 5665432 3
Q ss_pred ec-CCCeEEEEEec---CCCEEEEEEcC-CeEEEEECCCC
Q 004885 680 KC-QSGATQMRFQP---RLGRILAAAIE-NYISILDVETQ 714 (725)
Q Consensus 680 ~~-~~~V~sv~fsp---dg~~Lla~s~D-g~V~IwDl~tg 714 (725)
.. ...+..++|+| +|++|++++.+ +.|.||++...
T Consensus 303 ~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 303 PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred ecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 32 44578899999 89999988774 89999998766
No 162
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.49 E-value=3.5e-13 Score=159.63 Aligned_cols=195 Identities=15% Similarity=0.093 Sum_probs=137.5
Q ss_pred eEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC-----
Q 004885 483 SLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK----- 557 (725)
Q Consensus 483 s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~----- 557 (725)
..+.|++++. +++++ |+.|++|....+ .....+.+|...
T Consensus 20 ~~~~w~~dg~---------------~~~~~--~~~i~~~~~~~~-------------------~~~~~~~~~~~~~~~~~ 63 (740)
T 4a5s_A 20 YSLRWISDHE---------------YLYKQ--ENNILVFNAEYG-------------------NSSVFLENSTFDEFGHS 63 (740)
T ss_dssp CCEEECSSSE---------------EEEEE--TTEEEEEETTTC-------------------CEEEEECTTTTTTCCSC
T ss_pred cccEECCCCc---------------EEEEc--CCcEEEEECCCC-------------------ceEEEEechhhhhhccc
Confidence 4578888775 77776 899999955433 122334444432
Q ss_pred eEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004885 558 VESCHFSPDGKLLATGGHD---------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~D---------g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~ 628 (725)
...+.|||||++|+.++.+ +.+.+||+.+++.. .+..|...+..++|+|||+.|+.+. |+.|++||+.+
T Consensus 64 ~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~ 141 (740)
T 4a5s_A 64 INDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPN 141 (740)
T ss_dssp CCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTT
T ss_pred ccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCC
Confidence 3458999999999998876 55679999998765 4667788899999999999998885 78999999988
Q ss_pred CCeeeEEEecCCCCe-----------------EEEEEccCCCeEEEEEeCCC----------------------------
Q 004885 629 PDYSLRTFTGHSTTV-----------------MSLDFHPSKEDLLCSCDNNS---------------------------- 663 (725)
Q Consensus 629 ~~~~l~~~~~h~~~V-----------------~sl~fsP~g~~llaSgs~Dg---------------------------- 663 (725)
+.....+..++...+ ..+.|+|||+.|++...+++
T Consensus 142 ~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~ 221 (740)
T 4a5s_A 142 LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKA 221 (740)
T ss_dssp SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBT
T ss_pred CceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCC
Confidence 762222223333322 35899999996665433222
Q ss_pred -------cEEEEECCC---Ce---eEEEEe------cCCCeEEEEEecCCCEEEEEEc----CCeEEEEECCCCe
Q 004885 664 -------EIRYWSINN---GS---CAGVFK------CQSGATQMRFQPRLGRILAAAI----ENYISILDVETQV 715 (725)
Q Consensus 664 -------~I~IwDl~t---~~---~v~~~~------~~~~V~sv~fspdg~~Lla~s~----Dg~V~IwDl~tg~ 715 (725)
.|++||+.+ +. +..... +...+..++|+|||+.++.... +..|++||+.+++
T Consensus 222 G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 222 GAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp TSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred cCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 588899988 73 332221 2344889999999886665543 2479999999987
No 163
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.46 E-value=3.1e-12 Score=137.51 Aligned_cols=171 Identities=9% Similarity=0.068 Sum_probs=124.1
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEE--EcCCCCEEEEE------------
Q 004885 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR--FSPSLSRLATS------------ 615 (725)
Q Consensus 550 ~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~Ia--fsPd~~~Lasg------------ 615 (725)
...+|...+.+++|+|||+.|+.++.++.|++||+.+++....+..+...+.... ++|++++++..
T Consensus 75 lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~ 154 (388)
T 3pe7_A 75 LTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTD 154 (388)
T ss_dssp CCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS
T ss_pred eeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccc
Confidence 3345555666788999999999999999999999999888777776666665444 48899988743
Q ss_pred ----------eCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEcc-CCCeEEEEEeC-----CCcEEEEECCCCeeEEEE
Q 004885 616 ----------SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDN-----NSEIRYWSINNGSCAGVF 679 (725)
Q Consensus 616 ----------s~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP-~g~~llaSgs~-----Dg~I~IwDl~t~~~v~~~ 679 (725)
..+..|.+||+.++. ...+..+...+..++|+| +|..++++... ...|.++|+..+......
T Consensus 155 ~~~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 232 (388)
T 3pe7_A 155 WKKFHEFYFTKPCCRLMRVDLKTGE--STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVK 232 (388)
T ss_dssp HHHHHHHGGGCCCEEEEEEETTTCC--EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESC
T ss_pred cchhhhhhccCCcceEEEEECCCCc--eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEee
Confidence 234689999999876 455556667899999999 98866544432 337888888766544333
Q ss_pred ecC--CCeEEEEEecCCCEEEEEEc-CC----eEEEEECCCCe--EEEEEeC
Q 004885 680 KCQ--SGATQMRFQPRLGRILAAAI-EN----YISILDVETQV--CRLKLQV 722 (725)
Q Consensus 680 ~~~--~~V~sv~fspdg~~Lla~s~-Dg----~V~IwDl~tg~--~v~~l~G 722 (725)
... ..+..++|+|||+.|+..+. ++ .|++||+.+++ .+..+.+
T Consensus 233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 284 (388)
T 3pe7_A 233 THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPA 284 (388)
T ss_dssp CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECC
T ss_pred eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCC
Confidence 333 24778899999998766554 22 39999999986 4444444
No 164
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.45 E-value=1.8e-11 Score=130.29 Aligned_cols=166 Identities=11% Similarity=0.059 Sum_probs=126.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEe---------ccCCCCeEEEEEcC-CCCEEEEEe-CCCe
Q 004885 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTL---------EEHTQWITDVRFSP-SLSRLATSS-ADRT 620 (725)
Q Consensus 553 ~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~-~i~~l---------~~H~~~V~~IafsP-d~~~Lasgs-~Dgt 620 (725)
++-.....++|+++|+++++...++.|++||.+... .+..+ .++......|+|+| ++.++++.+ .++.
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 445678999999999988888889999999986542 45555 34555789999999 788777776 6899
Q ss_pred EEEEECCCCCeeeEEEecCC----------CCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeEE
Q 004885 621 VRVWDTENPDYSLRTFTGHS----------TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQ 687 (725)
Q Consensus 621 IrvWDl~~~~~~l~~~~~h~----------~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~---~~~V~s 687 (725)
|++||.. +. .+..+.... .....|+|+|++..++++...++.|++||..+++.+..+.. ...+..
T Consensus 168 I~~~~~~-g~-~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~ 245 (329)
T 3fvz_A 168 IVQFSPS-GK-FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFA 245 (329)
T ss_dssp EEEECTT-SC-EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEE
T ss_pred EEEEcCC-CC-EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcce
Confidence 9999943 44 455553222 34899999999666888888899999999999999988853 456889
Q ss_pred EEEecCCCEEEEEE-------cCCeEEEEECCCCeEEEEEe
Q 004885 688 MRFQPRLGRILAAA-------IENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 688 v~fspdg~~Lla~s-------~Dg~V~IwDl~tg~~v~~l~ 721 (725)
++|+| +..+++.+ .+..|++||+.+++++..+.
T Consensus 246 ~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~ 285 (329)
T 3fvz_A 246 ISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFK 285 (329)
T ss_dssp EEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEEC
T ss_pred eeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEc
Confidence 99999 32222222 23589999999999998884
No 165
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.44 E-value=1.9e-11 Score=132.42 Aligned_cols=163 Identities=9% Similarity=0.021 Sum_probs=113.5
Q ss_pred CCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeEEEE-eccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCC---
Q 004885 556 SKVESCHFSPDGKLLATGGH--DKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTEN--- 628 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~--Dg~V~IWdl~~~~~i~~-l~~H~~~V~~IafsPd~-~~Lasgs~DgtIrvWDl~~--- 628 (725)
.....++|+|||++|+++.. +++|.+||+.+++.+.. +.. . ....+.+.|++ ..+++.+.||.+.+|++..
T Consensus 108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~ 185 (361)
T 2oiz_A 108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGK 185 (361)
T ss_dssp CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSS
T ss_pred CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCc
Confidence 45778999999999998874 57999999999988877 432 1 12223444533 3445555555555555432
Q ss_pred ---------------------------------------------CCeee-EEEec------CC----CCeEEEEEccCC
Q 004885 629 ---------------------------------------------PDYSL-RTFTG------HS----TTVMSLDFHPSK 652 (725)
Q Consensus 629 ---------------------------------------------~~~~l-~~~~~------h~----~~V~sl~fsP~g 652 (725)
....+ ..+.- +. .....++|+|++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg 265 (361)
T 2oiz_A 186 VASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRAS 265 (361)
T ss_dssp EEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTT
T ss_pred EeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCC
Confidence 11000 00000 00 001126889998
Q ss_pred CeEEEEEe----------CCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC--eEEEEE
Q 004885 653 EDLLCSCD----------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ--VCRLKL 720 (725)
Q Consensus 653 ~~llaSgs----------~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg--~~v~~l 720 (725)
+.+++++. .+..|.+||+.+++.+..+..+. +.+|+|+|+|++|++++. +.|.|||+.++ +++.++
T Consensus 266 ~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 266 GRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp TEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred CeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEe
Confidence 88887665 13479999999999999998877 999999999998888776 99999999999 999997
Q ss_pred eC
Q 004885 721 QV 722 (725)
Q Consensus 721 ~G 722 (725)
.+
T Consensus 344 ~~ 345 (361)
T 2oiz_A 344 EG 345 (361)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 166
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.44 E-value=3e-13 Score=158.79 Aligned_cols=158 Identities=13% Similarity=0.054 Sum_probs=113.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-ccCCCCe-----------------EEEEEcCCCCEEEEEeC
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWI-----------------TDVRFSPSLSRLATSSA 617 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l-~~H~~~V-----------------~~IafsPd~~~Lasgs~ 617 (725)
..|.+++|||||++||++. |+.|++||+.+++..... .++...| .+++|+||+++|++++.
T Consensus 110 ~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~ 188 (719)
T 1z68_A 110 RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEF 188 (719)
T ss_dssp SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEE
T ss_pred cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEE
Confidence 4588999999999999986 789999999887765432 2333222 48999999999999876
Q ss_pred CC----------------------------------eEEEEECCCCCee--e-----EEEecCCCCeEEEEEccCCCeEE
Q 004885 618 DR----------------------------------TVRVWDTENPDYS--L-----RTFTGHSTTVMSLDFHPSKEDLL 656 (725)
Q Consensus 618 Dg----------------------------------tIrvWDl~~~~~~--l-----~~~~~h~~~V~sl~fsP~g~~ll 656 (725)
|. .|++||+.++... + ..+.+|...+.+++|+|++. ++
T Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~ 267 (719)
T 1z68_A 189 NDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER-VC 267 (719)
T ss_dssp ECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE-EE
T ss_pred CCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCe-EE
Confidence 52 7889999876521 1 12345778899999999965 66
Q ss_pred EEEeCC----CcEEEEE----CCCCeeEEEEe----c-CCCeE-----EEEEecCCCEEEEE-E-cCC--eEEEEECCCC
Q 004885 657 CSCDNN----SEIRYWS----INNGSCAGVFK----C-QSGAT-----QMRFQPRLGRILAA-A-IEN--YISILDVETQ 714 (725)
Q Consensus 657 aSgs~D----g~I~IwD----l~t~~~v~~~~----~-~~~V~-----sv~fspdg~~Lla~-s-~Dg--~V~IwDl~tg 714 (725)
++.... ..|++|| +.++++...+. . ...+. .++|+|||..|+.. + .++ .|.+||+.++
T Consensus 268 ~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~ 347 (719)
T 1z68_A 268 LQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE 347 (719)
T ss_dssp EEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST
T ss_pred EEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC
Confidence 554322 2488999 88877765552 2 34455 78999999976553 2 344 6888888776
Q ss_pred e
Q 004885 715 V 715 (725)
Q Consensus 715 ~ 715 (725)
+
T Consensus 348 ~ 348 (719)
T 1z68_A 348 N 348 (719)
T ss_dssp T
T ss_pred c
Confidence 5
No 167
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.43 E-value=5.4e-11 Score=122.89 Aligned_cols=194 Identities=9% Similarity=0.070 Sum_probs=138.7
Q ss_pred cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEE---EecCCCCCeEEEEE-cCCCCEEEEEeC-CCcEEE
Q 004885 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQ---LIPASTSKVESCHF-SPDGKLLATGGH-DKKAVL 581 (725)
Q Consensus 507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~H~~~V~~i~f-Spdg~~LaSgs~-Dg~V~I 581 (725)
+++++...++.|.+|... + .....+. ...+|...+.++++ .++++++++... ++.|++
T Consensus 42 ~l~v~~~~~~~i~~~d~~-g----------------~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 42 DIIVADTNNHRIQIFDKE-G----------------RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp CEEEEEGGGTEEEEECTT-S----------------CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CEEEEECCCCEEEEECCC-C----------------cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 377777788899999432 1 0000000 01234567899999 467776666543 889999
Q ss_pred EECCCCeEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEe--cCCCCeEEEEEccCCCeEEEE
Q 004885 582 WCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCS 658 (725)
Q Consensus 582 Wdl~~~~~i~~l~-~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~--~h~~~V~sl~fsP~g~~llaS 658 (725)
|| .+++.+..+. .+...+.+|+++|+++++++...++.|.+||... . .+..+. .+...+.+|++++++. ++++
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~-~~~~~~~~~~~~~p~~i~~~~~g~-l~v~ 180 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-N-VLHKFGCSKHLEFPNGVVVNDKQE-IFIS 180 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-C-EEEEEECTTTCSSEEEEEECSSSE-EEEE
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-C-EEEEeCCCCccCCcEEEEECCCCC-EEEE
Confidence 99 5566666664 3446789999999999888877889999999753 3 344443 3445789999999987 7777
Q ss_pred EeCCCcEEEEECCCCeeEEEEecC---CCeEEEEEecCCCEEEEEEcCC-eEEEEECCCCeEEEEEeCC
Q 004885 659 CDNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQVS 723 (725)
Q Consensus 659 gs~Dg~I~IwDl~t~~~v~~~~~~---~~V~sv~fspdg~~Lla~s~Dg-~V~IwDl~tg~~v~~l~GH 723 (725)
...++.|++||.. +..+..+... ..+..|+++++|..+++...++ .|.+||. +++.+..+..|
T Consensus 181 ~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~ 247 (286)
T 1q7f_A 181 DNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK 247 (286)
T ss_dssp EGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES
T ss_pred ECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc
Confidence 7778999999985 5666666543 4689999999987777766675 9999995 57777777654
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.43 E-value=3.7e-12 Score=147.91 Aligned_cols=167 Identities=9% Similarity=0.057 Sum_probs=126.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCC----------CcEEEEECCC------CeEEEEec-cCCCCeEEEEEcCCCCEEEEEe
Q 004885 554 STSKVESCHFSPDGKLLATGGHD----------KKAVLWCTES------FTVKSTLE-EHTQWITDVRFSPSLSRLATSS 616 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSgs~D----------g~V~IWdl~~------~~~i~~l~-~H~~~V~~IafsPd~~~Lasgs 616 (725)
|...+.+++|+|||+.|++++.| ..|++||+.+ ++. ..+. .+...+..++|+||+++|+.++
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~ 206 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLA 206 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEE
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEE
Confidence 56678999999999999998877 5899999987 544 4555 5667888999999999998877
Q ss_pred CC--------CeEEEEECC-CCC--eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCC
Q 004885 617 AD--------RTVRVWDTE-NPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQS 683 (725)
Q Consensus 617 ~D--------gtIrvWDl~-~~~--~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg--~I~IwDl~t~~~v~~~~~~~ 683 (725)
.+ ..|++||+. ++. .......+|...+..++|+|+|+ ++++++.++ .|++||+.++++........
T Consensus 207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 285 (662)
T 3azo_A 207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCRREE 285 (662)
T ss_dssp ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSS
T ss_pred CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCceeecccccc
Confidence 54 379999998 451 23444455678899999999999 778888888 67777776776654443321
Q ss_pred C---------eEEEEEecCCCEEEEEEcCCeEEEE--ECCCCeEEEEEeCCC
Q 004885 684 G---------ATQMRFQPRLGRILAAAIENYISIL--DVETQVCRLKLQVSH 724 (725)
Q Consensus 684 ~---------V~sv~fspdg~~Lla~s~Dg~V~Iw--Dl~tg~~v~~l~GH~ 724 (725)
. +..++|+|++..++++.. +.++|| |+.+++ +..+.+|.
T Consensus 286 ~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~ 335 (662)
T 3azo_A 286 EFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPW 335 (662)
T ss_dssp BSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSC
T ss_pred cccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCC
Confidence 1 567899999888888887 888888 666665 56666653
No 169
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.42 E-value=9.2e-11 Score=123.75 Aligned_cols=193 Identities=8% Similarity=0.050 Sum_probs=134.5
Q ss_pred EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEE
Q 004885 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD----KKAVLWC 583 (725)
Q Consensus 508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~D----g~V~IWd 583 (725)
+++++..++.|.+|....+ .+. .....+...|.+++|++++++++++..+ +.|.+||
T Consensus 58 l~~~~~~~~~i~~~d~~~~-----------------~~~--~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d 118 (333)
T 2dg1_A 58 LFLLDVFEGNIFKINPETK-----------------EIK--RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT 118 (333)
T ss_dssp EEEEETTTCEEEEECTTTC-----------------CEE--EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred EEEEECCCCEEEEEeCCCC-----------------cEE--EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEe
Confidence 7777778888988843221 111 1122455779999999999988887766 6899999
Q ss_pred CCCCeEEEEec--cCCCCeEEEEEcCCCCEEEEEeC------CCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeE
Q 004885 584 TESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSA------DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655 (725)
Q Consensus 584 l~~~~~i~~l~--~H~~~V~~IafsPd~~~Lasgs~------DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~l 655 (725)
.+++.....+. .+...+.+++++|+++++++... .+.|..||..++. +..+..+...+..++|+|+++.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~i~~~~dg~~l 196 (333)
T 2dg1_A 119 ENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT--VTPIIQNISVANGIALSTDEKVL 196 (333)
T ss_dssp TTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC--EEEEEEEESSEEEEEECTTSSEE
T ss_pred CCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE--EEEeecCCCcccceEECCCCCEE
Confidence 98776553443 34567999999999988777654 2456666665444 33333333568899999999877
Q ss_pred EEEEeCCCcEEEEECCC-CeeEEEE------ec--CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885 656 LCSCDNNSEIRYWSINN-GSCAGVF------KC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQV 722 (725)
Q Consensus 656 laSgs~Dg~I~IwDl~t-~~~v~~~------~~--~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~G 722 (725)
+++...++.|++||+++ +..+..+ .. ...+..++++++|..+++...++.|.+||. +++.+..+..
T Consensus 197 ~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~ 271 (333)
T 2dg1_A 197 WVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILI 271 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEEC
T ss_pred EEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEc
Confidence 77777788999999964 3332211 11 235788999999887777777899999998 5677776653
No 170
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.40 E-value=5.8e-11 Score=122.66 Aligned_cols=155 Identities=10% Similarity=0.198 Sum_probs=119.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 004885 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~--~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~ 631 (725)
+...+.+++++++++++++...++.|++||.. ++.+..+. .+...+.+|+++++++++++...++.|++||... .
T Consensus 119 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~- 195 (286)
T 1q7f_A 119 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-Q- 195 (286)
T ss_dssp TCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-C-
T ss_pred cCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-C-
Confidence 44568999999999988888888999999964 55555553 4556789999999998777777899999999854 3
Q ss_pred eeEEEecC--CCCeEEEEEccCCCeEEEEEeCCC-cEEEEECCCCeeEEEEecC---CCeEEEEEecCCCEEEEEEcCCe
Q 004885 632 SLRTFTGH--STTVMSLDFHPSKEDLLCSCDNNS-EIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAAIENY 705 (725)
Q Consensus 632 ~l~~~~~h--~~~V~sl~fsP~g~~llaSgs~Dg-~I~IwDl~t~~~v~~~~~~---~~V~sv~fspdg~~Lla~s~Dg~ 705 (725)
.+..+..+ ...+..|+++++|. ++++...++ .|++||.. ++.+..+... ..+.+++|+|+|..+ +++.|+.
T Consensus 196 ~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~-vs~~~~~ 272 (286)
T 1q7f_A 196 YLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVV-LASKDYR 272 (286)
T ss_dssp EEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEE-EEETTTE
T ss_pred EEEEEccCCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECCCCcEE-EECCCCe
Confidence 45555433 35789999999986 776776665 99999964 6667666542 237899999997644 4477999
Q ss_pred EEEEECCCC
Q 004885 706 ISILDVETQ 714 (725)
Q Consensus 706 V~IwDl~tg 714 (725)
|+||++...
T Consensus 273 v~v~~~~~~ 281 (286)
T 1q7f_A 273 LYIYRYVQL 281 (286)
T ss_dssp EEEEECSCC
T ss_pred EEEEEcccc
Confidence 999998654
No 171
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.40 E-value=2.8e-11 Score=126.45 Aligned_cols=191 Identities=13% Similarity=0.058 Sum_probs=151.1
Q ss_pred CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (725)
Q Consensus 506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~-~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl 584 (725)
++++++++.|+.|.+|+..++ +.+..+..+. ..+.++.++|+|++|+ +.++.|.+||.
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG-------------------~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~ 63 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTK-------------------EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR 63 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTT-------------------EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT
T ss_pred CcEEEeeCCCCEEEEEECCCC-------------------eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC
Confidence 468999999999999943222 4445555554 4789999999999888 45788999998
Q ss_pred CCCeEEEEeccCC-CCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCeeeEEEec------CCCCeEEEEEccCCCeEE
Q 004885 585 ESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTG------HSTTVMSLDFHPSKEDLL 656 (725)
Q Consensus 585 ~~~~~i~~l~~H~-~~V~~IafsPd~~~Lasgs~-DgtIrvWDl~~~~~~l~~~~~------h~~~V~sl~fsP~g~~ll 656 (725)
+++.+..+..+. ..+.++.+.++++++++.+. ++.|..+|. +++ .+..+.. +......+++.++|. ++
T Consensus 64 -~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk-~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~l 139 (276)
T 3no2_A 64 -DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGE-VLSKTEFETGIERPHAQFRQINKNKKGN-YL 139 (276)
T ss_dssp -TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSC-EEEEEEECCSCSSGGGSCSCCEECTTSC-EE
T ss_pred -CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCC-EEEEEeccCCCCcccccccCceECCCCC-EE
Confidence 889998887653 57889999999999999887 777877876 344 4444431 112345567889988 66
Q ss_pred EEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885 657 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQV 722 (725)
Q Consensus 657 aSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~G 722 (725)
++...++.|.+||.. |+.+..+.....+.++.+.++|..++++..++.|..||..+|+.+.++..
T Consensus 140 v~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~ 204 (276)
T 3no2_A 140 VPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNA 204 (276)
T ss_dssp EEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEG
T ss_pred EEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecC
Confidence 688889999999998 99999998766788889999988888888788999999999999988864
No 172
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.39 E-value=5.5e-12 Score=146.43 Aligned_cols=161 Identities=12% Similarity=0.128 Sum_probs=116.0
Q ss_pred EEEEc--CCCCE-EEEEeC-CCcEEEEECC--CCeEEEEecc-----CCCCeEEEEEcCCCCEEEEEeCC----------
Q 004885 560 SCHFS--PDGKL-LATGGH-DKKAVLWCTE--SFTVKSTLEE-----HTQWITDVRFSPSLSRLATSSAD---------- 618 (725)
Q Consensus 560 ~i~fS--pdg~~-LaSgs~-Dg~V~IWdl~--~~~~i~~l~~-----H~~~V~~IafsPd~~~Lasgs~D---------- 618 (725)
.+.|+ |||++ |+.++. +..|++|++. .......+.. |...+.+++|+||+++|++++.|
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~ 160 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR 160 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence 45555 99998 776654 5567777765 2033445555 67789999999999999988876
Q ss_pred CeEEEEECCC------CCeeeEEEe-cCCCCeEEEEEccCCCeEEEEEeCC-------CcEEEEECC-CC---eeEEEEe
Q 004885 619 RTVRVWDTEN------PDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNN-------SEIRYWSIN-NG---SCAGVFK 680 (725)
Q Consensus 619 gtIrvWDl~~------~~~~l~~~~-~h~~~V~sl~fsP~g~~llaSgs~D-------g~I~IwDl~-t~---~~v~~~~ 680 (725)
..|++||+.+ +. ...+. .+...+..++|+|||+.++++.... ..|++||+. ++ .......
T Consensus 161 ~~i~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~ 238 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSA--VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG 238 (662)
T ss_dssp EEEEEEETTSTTTTCGGG--SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE
T ss_pred eEEEEEECCCCccccCCc--eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC
Confidence 5899999987 43 45555 5567788899999999666554332 479999999 57 4444444
Q ss_pred c-CCCeEEEEEecCCCEEEEEEcCC--eEEEEECCCCeEEEEEeC
Q 004885 681 C-QSGATQMRFQPRLGRILAAAIEN--YISILDVETQVCRLKLQV 722 (725)
Q Consensus 681 ~-~~~V~sv~fspdg~~Lla~s~Dg--~V~IwDl~tg~~v~~l~G 722 (725)
. ...+..++|+|||+.++++..++ .|.+||+.++++...+.+
T Consensus 239 ~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 283 (662)
T 3azo_A 239 GPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRR 283 (662)
T ss_dssp ETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCC
T ss_pred CCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccc
Confidence 4 57799999999999666666677 677788877776554443
No 173
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.38 E-value=6.8e-11 Score=123.09 Aligned_cols=205 Identities=12% Similarity=0.049 Sum_probs=145.4
Q ss_pred CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (725)
Q Consensus 478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (725)
+......++|++++. .++.++..++.|..|.... + +..+..+...
T Consensus 26 ~~~~~eg~~~d~~g~--------------~l~~~~~~~~~i~~~~~~~----------------~-----~~~~~~~~~~ 70 (296)
T 3e5z_A 26 GFTWTEGPVYVPARS--------------AVIFSDVRQNRTWAWSDDG----------------Q-----LSPEMHPSHH 70 (296)
T ss_dssp CCSSEEEEEEEGGGT--------------EEEEEEGGGTEEEEEETTS----------------C-----EEEEESSCSS
T ss_pred CCccccCCeEeCCCC--------------EEEEEeCCCCEEEEEECCC----------------C-----eEEEECCCCC
Confidence 344556778888664 3667777888888883211 1 2233456677
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccC----CCCeEEEEEcCCCCEEEEEeC----------------
Q 004885 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH----TQWITDVRFSPSLSRLATSSA---------------- 617 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H----~~~V~~IafsPd~~~Lasgs~---------------- 617 (725)
+.+++|+++|+++++...++.|.+||..+++........ ...+.+++++|+++++++.+.
T Consensus 71 ~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~ 150 (296)
T 3e5z_A 71 QNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMEL 150 (296)
T ss_dssp EEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCS
T ss_pred cceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccC
Confidence 999999999998887777789999999777755443221 235678999999998887321
Q ss_pred -CCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC-CCee---EEEEec-CCCeEEEEEe
Q 004885 618 -DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSC---AGVFKC-QSGATQMRFQ 691 (725)
Q Consensus 618 -DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~-t~~~---v~~~~~-~~~V~sv~fs 691 (725)
.+.|..+|.. + .+..+..+......++|+|+++.+ ++...++.|++||+. ++.. ...+.. ...+..|+++
T Consensus 151 ~~~~l~~~~~~-g--~~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d 226 (296)
T 3e5z_A 151 PGRWVFRLAPD-G--TLSAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVD 226 (296)
T ss_dssp SSCEEEEECTT-S--CEEEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEB
T ss_pred CCcEEEEECCC-C--CEEEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEEC
Confidence 2355555554 3 345556666778999999999966 777778999999997 5554 334421 3457789999
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885 692 PRLGRILAAAIENYISILDVETQVCRLKLQVSH 724 (725)
Q Consensus 692 pdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~ 724 (725)
++|..+++. ++.|.+||.. ++.+..+..+.
T Consensus 227 ~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~ 256 (296)
T 3e5z_A 227 AGGLIWASA--GDGVHVLTPD-GDELGRVLTPQ 256 (296)
T ss_dssp TTSCEEEEE--TTEEEEECTT-SCEEEEEECSS
T ss_pred CCCCEEEEc--CCeEEEECCC-CCEEEEEECCC
Confidence 998755554 8899999987 78888777653
No 174
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.37 E-value=6.6e-11 Score=125.93 Aligned_cols=166 Identities=14% Similarity=0.127 Sum_probs=129.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC------------------------CcEEEEECCCCeEEEEec-cCCCCeEEEEEcCCC
Q 004885 555 TSKVESCHFSPDGKLLATGGHD------------------------KKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSL 609 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~D------------------------g~V~IWdl~~~~~i~~l~-~H~~~V~~IafsPd~ 609 (725)
-+.|.+|+++++|+++++.+.+ ++|.+||..+++.+..+. ++...+..|+++|++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3569999999999999888777 479999998888876664 445678999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEEE---------ecCCCCeEEEEEccCCCeEEEEEe-CCCcEEEEECCCCeeEEEE
Q 004885 610 SRLATSSADRTVRVWDTENPDYSLRTF---------TGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVF 679 (725)
Q Consensus 610 ~~Lasgs~DgtIrvWDl~~~~~~l~~~---------~~h~~~V~sl~fsP~g~~llaSgs-~Dg~I~IwDl~t~~~v~~~ 679 (725)
+++++...++.|++||.......+..+ .++......|+|+|++..++++.+ .++.|++|| .++..+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 988888889999999987653234554 234457899999994344777775 689999999 567777777
Q ss_pred ec-C----------CCeEEEEEecCCCEEEEE-EcCCeEEEEECCCCeEEEEEe
Q 004885 680 KC-Q----------SGATQMRFQPRLGRILAA-AIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 680 ~~-~----------~~V~sv~fspdg~~Lla~-s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
.. . ..+..|+|+|+++.|+++ ..++.|++||..+|+++..+.
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~ 235 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK 235 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe
Confidence 53 1 238999999995555555 457899999999999998884
No 175
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.36 E-value=2.1e-11 Score=131.03 Aligned_cols=168 Identities=11% Similarity=0.036 Sum_probs=128.2
Q ss_pred eEEEecCCCCCeEE-----EEEcCCCCEEEEEeC-CCc--EEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC
Q 004885 547 EFQLIPASTSKVES-----CHFSPDGKLLATGGH-DKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 618 (725)
Q Consensus 547 ~~~~l~~H~~~V~~-----i~fSpdg~~LaSgs~-Dg~--V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D 618 (725)
.+..+..|...+.. .+|+|||++|+.++. ++. |.+||+.+++......++...+..++|+|++++|+.++.+
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~ 101 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG 101 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence 44555566655555 899999999998887 663 8888999988877777776666678899999999999999
Q ss_pred CeEEEEECCCCCeeeEEEecCCCCeEEEE--EccCCCeEEEEE---------------------eCCCcEEEEECCCCee
Q 004885 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLD--FHPSKEDLLCSC---------------------DNNSEIRYWSINNGSC 675 (725)
Q Consensus 619 gtIrvWDl~~~~~~l~~~~~h~~~V~sl~--fsP~g~~llaSg---------------------s~Dg~I~IwDl~t~~~ 675 (725)
+.|++||+.++. ....+..+...+.... ++|++..+++.. ..+..|++||+.+++.
T Consensus 102 ~~l~~~d~~~g~-~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 102 RNLMRVDLATLE-ENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TEEEEEETTTCC-EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CeEEEEECCCCc-ceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 999999999887 4555555555554444 489988554321 2346799999999987
Q ss_pred EEEEecCCCeEEEEEec-CCCEEEEEEcC------CeEEEEECCCCe
Q 004885 676 AGVFKCQSGATQMRFQP-RLGRILAAAIE------NYISILDVETQV 715 (725)
Q Consensus 676 v~~~~~~~~V~sv~fsp-dg~~Lla~s~D------g~V~IwDl~tg~ 715 (725)
.........+..++|+| ||+.|+.+..+ ..|.++|+.+++
T Consensus 181 ~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~ 227 (388)
T 3pe7_A 181 TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN 227 (388)
T ss_dssp EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC
T ss_pred EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc
Confidence 77666677799999999 99888877763 378888887654
No 176
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.36 E-value=3.9e-11 Score=126.63 Aligned_cols=164 Identities=10% Similarity=0.079 Sum_probs=123.4
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC----CeEEE
Q 004885 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRV 623 (725)
Q Consensus 548 ~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D----gtIrv 623 (725)
+..+..+...+.+++|++++++++++..++.|.+||.++++....+..+...+.+++|+|+++++++...+ +.|.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~ 116 (333)
T 2dg1_A 37 WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA 116 (333)
T ss_dssp EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEE
Confidence 44556677778999999999988888889999999998887665554567789999999999888777666 68999
Q ss_pred EECCCCCeeeEEEe--cCCCCeEEEEEccCCCeEEEEEeC------CCcEEEEECCCCeeEEEEecCCCeEEEEEecCCC
Q 004885 624 WDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG 695 (725)
Q Consensus 624 WDl~~~~~~l~~~~--~h~~~V~sl~fsP~g~~llaSgs~------Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~ 695 (725)
||..+.. ....+. .+...+.+++++|+|. ++++... .+.|..||..+++..........+..++|+|++.
T Consensus 117 ~d~~~~~-~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~ 194 (333)
T 2dg1_A 117 ATENGDN-LQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEK 194 (333)
T ss_dssp ECTTSCS-CEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSS
T ss_pred EeCCCCE-EEEEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCC
Confidence 9998776 222222 2445789999999987 5555543 3567777776655544433345688999999998
Q ss_pred EEEEEE-cCCeEEEEECCC
Q 004885 696 RILAAA-IENYISILDVET 713 (725)
Q Consensus 696 ~Lla~s-~Dg~V~IwDl~t 713 (725)
.|+++. .++.|.+||+++
T Consensus 195 ~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 195 VLWVTETTANRLHRIALED 213 (333)
T ss_dssp EEEEEEGGGTEEEEEEECT
T ss_pred EEEEEeCCCCeEEEEEecC
Confidence 776655 478999999964
No 177
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.35 E-value=6.5e-11 Score=139.40 Aligned_cols=165 Identities=7% Similarity=-0.008 Sum_probs=121.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCc----------------EEEEECCCCe----EEEEeccCCCCeEEEEEcCCCCEEEEEeC
Q 004885 558 VESCHFSPDGKLLATGGHDKK----------------AVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSA 617 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~----------------V~IWdl~~~~----~i~~l~~H~~~V~~IafsPd~~~Lasgs~ 617 (725)
+.+++|+|||+.|+.++.|+. |++|++.++. .+.....|...+..+.|+||+++|+.++.
T Consensus 173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~ 252 (710)
T 2xdw_A 173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR 252 (710)
T ss_dssp SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEE
Confidence 678999999999999988776 9999998765 22222335667889999999999887764
Q ss_pred -----CCeEEEEECCC------CCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC---cEEEEECCCCe---eEEEEe
Q 004885 618 -----DRTVRVWDTEN------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS---EIRYWSINNGS---CAGVFK 680 (725)
Q Consensus 618 -----DgtIrvWDl~~------~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg---~I~IwDl~t~~---~v~~~~ 680 (725)
+..|.+||+.+ +...+..+..+...+.. .|+|+|..+++.+..++ .|.+||+.++. ....+.
T Consensus 253 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~ 331 (710)
T 2xdw_A 253 EGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP 331 (710)
T ss_dssp CSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC
T ss_pred ccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccC
Confidence 57899999986 43245666667666655 48899998777766443 69999998764 233333
Q ss_pred cCC--CeEEEEEecCCCEEEEEEcCC--eEEEEECCCCeEEEEEeCC
Q 004885 681 CQS--GATQMRFQPRLGRILAAAIEN--YISILDVETQVCRLKLQVS 723 (725)
Q Consensus 681 ~~~--~V~sv~fspdg~~Lla~s~Dg--~V~IwDl~tg~~v~~l~GH 723 (725)
+.. .+..++|++++..+++...|+ .|.+||+.+|+.++.+..|
T Consensus 332 ~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~ 378 (710)
T 2xdw_A 332 EHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE 378 (710)
T ss_dssp CCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC
T ss_pred CCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC
Confidence 322 577899997655666666676 4677888788888888765
No 178
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.33 E-value=4.9e-10 Score=129.00 Aligned_cols=194 Identities=10% Similarity=0.017 Sum_probs=149.4
Q ss_pred cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-
Q 004885 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE- 585 (725)
Q Consensus 507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~- 585 (725)
.++++...++.|.+|+. .+.+.+..+.. ...+.++.|+|||+++++++.|+.|.+||+.
T Consensus 168 ~~~V~~~~~~~V~viD~-------------------~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~ 227 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDG-------------------STYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWM 227 (567)
T ss_dssp EEEEEETTTTEEEEEET-------------------TTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred eEEEEeCCCCeEEEEEC-------------------CCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCC
Confidence 46677778889999943 22234444443 2357799999999999999999999999996
Q ss_pred -CCeEEEEeccCCCCeEEEEEc----CCCCEEEEEeC-CCeEEEEECCCCCeeeEEEec----------C-CCCeEEEEE
Q 004885 586 -SFTVKSTLEEHTQWITDVRFS----PSLSRLATSSA-DRTVRVWDTENPDYSLRTFTG----------H-STTVMSLDF 648 (725)
Q Consensus 586 -~~~~i~~l~~H~~~V~~Iafs----Pd~~~Lasgs~-DgtIrvWDl~~~~~~l~~~~~----------h-~~~V~sl~f 648 (725)
+.+.+..+... .....++|+ |+++++++++. +++|.|+|..+.+ .+..+.. | ...+..+.+
T Consensus 228 ~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~-~~~~i~~~~~~~~~~~~~p~~rva~i~~ 305 (567)
T 1qks_A 228 KEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE-PKKIQSTRGMTYDEQEYHPEPRVAAILA 305 (567)
T ss_dssp SSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC-EEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred CCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc-EEEEEeccccccccccccCCCceEEEEE
Confidence 77887777653 346799999 69999888765 5899999998877 5555432 1 126888999
Q ss_pred ccCCCeEEEEEeCCCcEEEEECCCCee--EEEEecCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeC
Q 004885 649 HPSKEDLLCSCDNNSEIRYWSINNGSC--AGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQV 722 (725)
Q Consensus 649 sP~g~~llaSgs~Dg~I~IwDl~t~~~--v~~~~~~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~tg~~v~~l~G 722 (725)
++++..++++...+|.|.++|...... +..+........+.|+|++++++++.. ++.|.++|+.+++.+..+.-
T Consensus 306 s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~v 382 (567)
T 1qks_A 306 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT 382 (567)
T ss_dssp CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred cCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEec
Confidence 999888888888889999999987543 333444566889999999999888775 78999999999998877753
No 179
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.29 E-value=1.2e-11 Score=132.66 Aligned_cols=159 Identities=9% Similarity=0.013 Sum_probs=113.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEE-------------------EEEcCCCCEEEEE---
Q 004885 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-------------------VRFSPSLSRLATS--- 615 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~-------------------IafsPd~~~Lasg--- 615 (725)
+.++.|+|||++|+.++.++.|++||+.+++....+..+.....+ ++|+|+++.++.+
T Consensus 83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~ 162 (396)
T 3c5m_A 83 TFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFY 162 (396)
T ss_dssp TTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHH
T ss_pred cccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeec
Confidence 334889999999999999999999999988776666545543333 3567777766554
Q ss_pred --eCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEcc-CCCeEEEEEeCC-----CcEEEEECCCCeeEEEEec--CCCe
Q 004885 616 --SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKC--QSGA 685 (725)
Q Consensus 616 --s~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP-~g~~llaSgs~D-----g~I~IwDl~t~~~v~~~~~--~~~V 685 (725)
..+..|.+||+.++. . ..+..+...+..+.|+| ++..++++.... ..|.+||+..+........ ...+
T Consensus 163 ~~~~~~~l~~~d~~~g~-~-~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 240 (396)
T 3c5m_A 163 HTNPTCRLIKVDIETGE-L-EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESC 240 (396)
T ss_dssp HTCCCEEEEEEETTTCC-E-EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEE
T ss_pred cCCCcceEEEEECCCCc-E-EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccc
Confidence 356789999998876 3 33335667799999999 676555444322 4689999876654333332 1247
Q ss_pred EEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEE
Q 004885 686 TQMRFQPRLGRILAAAIE-----NYISILDVETQVCRL 718 (725)
Q Consensus 686 ~sv~fspdg~~Lla~s~D-----g~V~IwDl~tg~~v~ 718 (725)
..++|+|+|++|++++.+ +.|++||+.+++...
T Consensus 241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~ 278 (396)
T 3c5m_A 241 THEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEE 278 (396)
T ss_dssp EEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEE
T ss_pred cceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEE
Confidence 789999999988777654 449999999886543
No 180
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.28 E-value=2.3e-11 Score=144.12 Aligned_cols=141 Identities=16% Similarity=0.080 Sum_probs=110.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCC-----eEEEEEcCCCCEEEEEeCC---------CeE
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----ITDVRFSPSLSRLATSSAD---------RTV 621 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~-----V~~IafsPd~~~Lasgs~D---------gtI 621 (725)
....++.|+||+++|+++ |++|++||+.++++...+.+|... ..++.|+||+++|+.++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 346789999999988886 999999999999988888877643 2448899999999998876 556
Q ss_pred EEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-C-CCe--------------
Q 004885 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-Q-SGA-------------- 685 (725)
Q Consensus 622 rvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~-~~V-------------- 685 (725)
.+||+.++. +..+..|.+.+..++|+|||+.++ .+. |+.|++||+.++.+...... . ..+
T Consensus 95 ~~~d~~~~~--~~~l~~~~~~~~~~~~SPdG~~la-~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 95 DIYDLNKRQ--LITEERIPNNTQWVTWSPVGHKLA-YVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp EEEETTTTE--ECCSSCCCTTEEEEEECSSTTCEE-EEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred EEEECCCCc--EEEcccCCCcceeeEECCCCCEEE-EEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence 799999876 345667778899999999999665 443 78999999998876543221 1 112
Q ss_pred ---EEEEEecCCCEEEEEEc
Q 004885 686 ---TQMRFQPRLGRILAAAI 702 (725)
Q Consensus 686 ---~sv~fspdg~~Lla~s~ 702 (725)
..+.|+|||++|+.++.
T Consensus 171 ~~~~~~~wSpDg~~la~~~~ 190 (740)
T 4a5s_A 171 SAYSALWWSPNGTFLAYAQF 190 (740)
T ss_dssp SSSBCEEECTTSSEEEEEEE
T ss_pred CCCcceEECCCCCEEEEEEE
Confidence 35899999999988764
No 181
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.26 E-value=4.1e-10 Score=114.65 Aligned_cols=158 Identities=6% Similarity=-0.054 Sum_probs=114.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEE
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~ 635 (725)
..+.+++++++++++++.. ++.|.+||................+.+|+++++++++++...++.|.+||..+.. ....
T Consensus 67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~-~~~~ 144 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT-QTVL 144 (270)
T ss_dssp CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCS-CEEC
T ss_pred CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCce-eEee
Confidence 4578999999999666655 8899999987654332222233678999999999877777778899999876544 2222
Q ss_pred EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ 714 (725)
Q Consensus 636 ~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg 714 (725)
.......+.+|++++++. ++++...++.|.+||............ ...+..|+++++|..+++...++.|.+||..+.
T Consensus 145 ~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~ 223 (270)
T 1rwi_B 145 PFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST 223 (270)
T ss_dssp CCCSCCSCCCEEECTTCC-EEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred ccccCCCceeEEEeCCCC-EEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence 222334678899999987 777777778999999987655433222 356899999999865555556789999998765
Q ss_pred eE
Q 004885 715 VC 716 (725)
Q Consensus 715 ~~ 716 (725)
..
T Consensus 224 ~~ 225 (270)
T 1rwi_B 224 TS 225 (270)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.26 E-value=2.3e-10 Score=121.08 Aligned_cols=150 Identities=11% Similarity=0.098 Sum_probs=105.1
Q ss_pred eEEEEEcCCCCEEEEEeCC---------------------------CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCC
Q 004885 558 VESCHFSPDGKLLATGGHD---------------------------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~D---------------------------g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~ 610 (725)
|.+++|+|||+.|+.++.+ ..|++||+.+++.+..+.. . .+..++|+|++
T Consensus 106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg- 182 (347)
T 2gop_A 106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK- 182 (347)
T ss_dssp EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-
T ss_pred ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-
Confidence 8999999999988887643 5799999998877455554 3 78899999999
Q ss_pred EEEEEeCCC-------eEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC-------CcEEEEECCCCeeE
Q 004885 611 RLATSSADR-------TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-------SEIRYWSINNGSCA 676 (725)
Q Consensus 611 ~Lasgs~Dg-------tIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D-------g~I~IwDl~t~~~v 676 (725)
+++++..+. ...||.+++ . .+..+..+ ..+..+ +|+|+.+++.+..+ ..|.+|| +++..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~l~~~d~-~-~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~ 255 (347)
T 2gop_A 183 IVVNVPHREIIPQYFKFWDIYIWED-G-KEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM 255 (347)
T ss_dssp EEEEEECCCSSCCSSCCEEEEEEET-T-EEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE
T ss_pred EEEEEecccccccccccccEEEeCC-C-ceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE
Confidence 888876542 445655553 3 24444444 555554 99999776555432 4688888 55554
Q ss_pred EEEec-CCCeEE-EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 004885 677 GVFKC-QSGATQ-MRFQPRLGRILAAAIENYISILDVETQVCRLKL 720 (725)
Q Consensus 677 ~~~~~-~~~V~s-v~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l 720 (725)
..+.. ...+.. +.|+ ++ .+++++.++.++|| +.++++...+
T Consensus 256 ~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~ 298 (347)
T 2gop_A 256 GILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA 298 (347)
T ss_dssp ESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE
T ss_pred eccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe
Confidence 33333 345775 8999 87 77788889999999 8777654443
No 183
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.24 E-value=3.5e-10 Score=115.22 Aligned_cols=158 Identities=9% Similarity=-0.016 Sum_probs=117.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEE
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~ 635 (725)
..+.+++++++|+++++...++.|.+|+..+.............+.+|+++++++++++...++.|.+||..... ....
T Consensus 108 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~-~~~~ 186 (270)
T 1rwi_B 108 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN-QVVL 186 (270)
T ss_dssp SSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC-EEEC
T ss_pred CCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc-eEee
Confidence 468899999999988877778899999866544433223334567899999999877777778899999998765 2222
Q ss_pred EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ 714 (725)
Q Consensus 636 ~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg 714 (725)
...+...+.+|+++++|. ++++...++.|.+||............ ...+.+++++++|..+++...++.|++|++...
T Consensus 187 ~~~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 187 PFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp CCSSCCSEEEEEECTTCC-EEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred cccCCCCceEEEECCCCC-EEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 223336789999999985 777777788999999976544332212 256899999999887777677899999998754
Q ss_pred e
Q 004885 715 V 715 (725)
Q Consensus 715 ~ 715 (725)
+
T Consensus 266 ~ 266 (270)
T 1rwi_B 266 H 266 (270)
T ss_dssp G
T ss_pred c
Confidence 3
No 184
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.23 E-value=1e-10 Score=125.37 Aligned_cols=151 Identities=8% Similarity=0.085 Sum_probs=107.9
Q ss_pred EEEcCCCCEEEEE-----eCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCC------CeEEEEECCC
Q 004885 561 CHFSPDGKLLATG-----GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSAD------RTVRVWDTEN 628 (725)
Q Consensus 561 i~fSpdg~~LaSg-----s~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~D------gtIrvWDl~~ 628 (725)
+.|+|+++.++.+ ..+..|++||+.+++..... .+...+..+.|+| ++..|+.++.+ ..|.+||+..
T Consensus 147 ~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~ 225 (396)
T 3c5m_A 147 RDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDG 225 (396)
T ss_dssp GGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTS
T ss_pred cccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCC
Confidence 4678888877654 35678999999888765544 5677899999999 78877666543 3688888876
Q ss_pred CCeeeEEEecC--CCCeEEEEEccCCCeEEEEEeCC----CcEEEEECCCCeeEEEEecCCCeEEEEEec-CCCEEEEEE
Q 004885 629 PDYSLRTFTGH--STTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFKCQSGATQMRFQP-RLGRILAAA 701 (725)
Q Consensus 629 ~~~~l~~~~~h--~~~V~sl~fsP~g~~llaSgs~D----g~I~IwDl~t~~~v~~~~~~~~V~sv~fsp-dg~~Lla~s 701 (725)
.. ...+..+ ...+..++|+|+|+.+++++..+ +.|++||+.+++........ .+. +.|+| +|..+++++
T Consensus 226 ~~--~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~-~~~s~~dg~~l~~~~ 301 (396)
T 3c5m_A 226 SN--VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-PCS-HLMSNFDGSLMVGDG 301 (396)
T ss_dssp CC--CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-SEE-EEEECSSSSEEEEEE
T ss_pred Cc--eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-CCC-CCccCCCCceEEEec
Confidence 54 3333333 23578899999999766554432 34999999988765444332 234 89999 999877754
Q ss_pred ----------------cCCeEEEEECCCCeE
Q 004885 702 ----------------IENYISILDVETQVC 716 (725)
Q Consensus 702 ----------------~Dg~V~IwDl~tg~~ 716 (725)
.+..|++||+.+++.
T Consensus 302 ~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 302 CDAPVDVADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp CCC----------CCCCCCEEEEEETTTTBC
T ss_pred CCcceeeccccccccCCCCcEEEEecccCce
Confidence 247899999998864
No 185
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.22 E-value=1.6e-10 Score=126.61 Aligned_cols=134 Identities=11% Similarity=0.079 Sum_probs=108.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004885 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (725)
Q Consensus 553 ~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~ 632 (725)
.+.. |+.++| |+++|+++ .++.|++||+.+.........|...|.++.+.+. .++++..||.|.+||+.+.. .
T Consensus 86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~-~ 158 (388)
T 1xip_A 86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKS-T 158 (388)
T ss_dssp ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCC-E
T ss_pred eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCc-c
Confidence 3556 999999 99999999 8899999999886666667778888998887764 38889999999999999776 2
Q ss_pred eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee--EEEEe----------cCCCeEEEEEecCCCEEEEE
Q 004885 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--AGVFK----------CQSGATQMRFQPRLGRILAA 700 (725)
Q Consensus 633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~--v~~~~----------~~~~V~sv~fspdg~~Lla~ 700 (725)
.. +...|+|++|+|+| ++.+..||.|++|+.+.+.+ ..++. +...|.+|+|.+++.++++=
T Consensus 159 ~~----~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 159 KQ----LAQNVTSFDVTNSQ---LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EE----EEESEEEEEECSSE---EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred cc----ccCCceEEEEcCCc---eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 32 34689999999998 45678899999999988876 55662 34669999999987777653
No 186
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.21 E-value=4.6e-10 Score=131.87 Aligned_cols=205 Identities=9% Similarity=-0.048 Sum_probs=138.2
Q ss_pred CCeeEEEEecCCCccccccCCccCCCCcEEE-----EeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVD-----DGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 554 (725)
Q Consensus 480 ~~~s~l~fs~dg~~~la~~s~~~~~~~~~la-----sGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H 554 (725)
.....+.|+|||. +|+ .|+.+..|++|+...+.... . ..+...
T Consensus 121 ~~~~~~~~SPDG~---------------~la~~~~~~G~~~~~i~v~dl~tg~~~~--~---------------~~~~~~ 168 (695)
T 2bkl_A 121 VSLGTWAVSWDGK---------------KVAFAQKPNAADEAVLHVIDVDSGEWSK--V---------------DVIEGG 168 (695)
T ss_dssp EEEEEEEECTTSS---------------EEEEEEEETTCSCCEEEEEETTTCCBCS--S---------------CCBSCC
T ss_pred EEEEEEEECCCCC---------------EEEEEECCCCCceEEEEEEECCCCCCcC--C---------------cccCcc
Confidence 3567788999887 444 45556789999665442110 0 001111
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCc-------------EEEEECCCCe----EEEEeccCCCCeEEEEEcCCCCEEEEEeC
Q 004885 555 TSKVESCHFSPDGKLLATGGHDKK-------------AVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSA 617 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~Dg~-------------V~IWdl~~~~----~i~~l~~H~~~V~~IafsPd~~~Lasgs~ 617 (725)
....++|+|||+.|+.++.|.. |++|++.++. .+.....|...+..+.|+||+++|+.++.
T Consensus 169 --~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~ 246 (695)
T 2bkl_A 169 --KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYIL 246 (695)
T ss_dssp --TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEE
T ss_pred --cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEe
Confidence 1267999999999999998876 9999998765 33333456678999999999999887776
Q ss_pred CC----eEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEe---CCCcEEEEECCCCee---EEEEec--CCCe
Q 004885 618 DR----TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNGSC---AGVFKC--QSGA 685 (725)
Q Consensus 618 Dg----tIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs---~Dg~I~IwDl~t~~~---v~~~~~--~~~V 685 (725)
++ .|.+||..++. ...+..+...+....| +++. ++++.. .++.|.+||+.++.. ...+.+ ...+
T Consensus 247 ~~~~~~~l~~~~~~~~~--~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l 322 (695)
T 2bkl_A 247 RGWSENDVYWKRPGEKD--FRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASL 322 (695)
T ss_dssp ETTTEEEEEEECTTCSS--CEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEE
T ss_pred CCCCceEEEEEcCCCCc--eEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeE
Confidence 65 66677655443 5556666666777777 6777 776665 357899999987753 444433 3347
Q ss_pred EEEEEecCCCEEEEEEcCCeEEEEECC-CCeEEEEEeCC
Q 004885 686 TQMRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQVS 723 (725)
Q Consensus 686 ~sv~fspdg~~Lla~s~Dg~V~IwDl~-tg~~v~~l~GH 723 (725)
..++|+ ++..+++...|+..+||.+. +++.+..+..+
T Consensus 323 ~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~ 360 (695)
T 2bkl_A 323 LSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLP 360 (695)
T ss_dssp EEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCS
T ss_pred EEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCC
Confidence 888888 54566666778887777554 46666666544
No 187
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.21 E-value=6e-10 Score=120.64 Aligned_cols=171 Identities=13% Similarity=0.189 Sum_probs=113.9
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCeEEEEeccC------CCCeEEEEEcCCCCE
Q 004885 548 FQLIPASTSKVESCHFSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEH------TQWITDVRFSPSLSR 611 (725)
Q Consensus 548 ~~~l~~H~~~V~~i~fSpdg~~LaSgs~----------Dg~V~IWdl~~~~~i~~l~~H------~~~V~~IafsPd~~~ 611 (725)
+..+..+..+ .++|+||+++|+++.. +++|.+||+.+.+.+..+... ......++|+|++++
T Consensus 44 ~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~ 121 (361)
T 2oiz_A 44 LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKF 121 (361)
T ss_dssp EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSE
T ss_pred EEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCE
Confidence 3445555444 8999999999998863 678999999998888777532 345678999999999
Q ss_pred EEEEeC--CCeEEEEECCCCCeeeEE-EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC-CeeE-----------
Q 004885 612 LATSSA--DRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCA----------- 676 (725)
Q Consensus 612 Lasgs~--DgtIrvWDl~~~~~~l~~-~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t-~~~v----------- 676 (725)
|+++.. +++|.+||+.+.+ .+.. +. +. ....+.+.|++...+++.+.||.+.+|++.. ++..
T Consensus 122 l~v~n~~~~~~v~v~d~~~~~-~~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~ 198 (361)
T 2oiz_A 122 IVLQNASPATSIGIVDVAKGD-YVEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSV 198 (361)
T ss_dssp EEEEEESSSEEEEEEETTTTE-EEEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCT
T ss_pred EEEECCCCCCeEEEEECCCCc-EEEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcC
Confidence 999874 6899999999876 4554 32 21 1222444554433444444455555554432 2211
Q ss_pred --------------------------------------EEEec-----------CCCeEEEEEecCCCEEEEEEc-----
Q 004885 677 --------------------------------------GVFKC-----------QSGATQMRFQPRLGRILAAAI----- 702 (725)
Q Consensus 677 --------------------------------------~~~~~-----------~~~V~sv~fspdg~~Lla~s~----- 702 (725)
..+.. ..+...++|+|++++++++..
T Consensus 199 ~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~ 278 (361)
T 2oiz_A 199 KDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKE 278 (361)
T ss_dssp TTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCT
T ss_pred CCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCc
Confidence 11110 011112789999888887654
Q ss_pred ------CCeEEEEECCCCeEEEEEeCC
Q 004885 703 ------ENYISILDVETQVCRLKLQVS 723 (725)
Q Consensus 703 ------Dg~V~IwDl~tg~~v~~l~GH 723 (725)
++.|.+||+.+++++.++..|
T Consensus 279 ~~~~~~~~~v~viD~~t~~~v~~i~~~ 305 (361)
T 2oiz_A 279 GTHKFPAAEIWVMDTKTKQRVARIPGR 305 (361)
T ss_dssp TCTTCCCSEEEEEETTTTEEEEEEECT
T ss_pred ccccCCCceEEEEECCCCcEEEEEecC
Confidence 358999999999999999876
No 188
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.20 E-value=1.5e-09 Score=112.78 Aligned_cols=156 Identities=12% Similarity=0.107 Sum_probs=112.5
Q ss_pred CCeEEEEEcCCCCEEEEEeC-----------------CCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC
Q 004885 556 SKVESCHFSPDGKLLATGGH-----------------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 618 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~-----------------Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D 618 (725)
..+.+++++|+|+++++.+. .+.|..++.. ++ +..+..+...+..++|+|+++.|++.+.+
T Consensus 115 ~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~ 192 (296)
T 3e5z_A 115 NSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGD 192 (296)
T ss_dssp CCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTT
T ss_pred CCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCC
Confidence 34778999999998887321 2356556554 44 34455567778999999999988777778
Q ss_pred CeEEEEECC-CCCe--eeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEE-ecCC
Q 004885 619 RTVRVWDTE-NPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRF-QPRL 694 (725)
Q Consensus 619 gtIrvWDl~-~~~~--~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~f-spdg 694 (725)
+.|.+||+. ++.. ....+..+...+.+++++++|. ++++. ++.|.+||.. ++.+..+.....+++++| .|++
T Consensus 193 ~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~~~v~~~~~~-g~~~~~~~~~~~~~~~~f~~~d~ 268 (296)
T 3e5z_A 193 NATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--GDGVHVLTPD-GDELGRVLTPQTTSNLCFGGPEG 268 (296)
T ss_dssp TEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--TTEEEEECTT-SCEEEEEECSSCCCEEEEESTTS
T ss_pred CeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--CCeEEEECCC-CCEEEEEECCCCceeEEEECCCC
Confidence 999999997 3331 1233333455677899999997 55555 7889999987 777777776444999999 5888
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEE
Q 004885 695 GRILAAAIENYISILDVETQVCRL 718 (725)
Q Consensus 695 ~~Lla~s~Dg~V~IwDl~tg~~v~ 718 (725)
+.|++++.+ .|..++.++.++.+
T Consensus 269 ~~L~v~t~~-~l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 269 RTLYMTVST-EFWSIETNVRGLEH 291 (296)
T ss_dssp CEEEEEETT-EEEEEECSCCBCCC
T ss_pred CEEEEEcCC-eEEEEEcccccccc
Confidence 888888765 56677777765433
No 189
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.20 E-value=1.5e-10 Score=126.82 Aligned_cols=149 Identities=13% Similarity=0.124 Sum_probs=120.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-----------EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004885 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~-----------~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWD 625 (725)
.++.+++++...+|++|+.|+ ++||++++.. ..... .+.. |+.|+| ++.+|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 589999999999999999885 6669865322 11222 3566 999999 89999999 889999999
Q ss_pred CCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCe
Q 004885 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 705 (725)
Q Consensus 626 l~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~ 705 (725)
+.+.. .......|...|.++.+.+. . ++++..||.|.+||+.++.... ....|++++|+|+| ++++..||.
T Consensus 113 v~sl~-~~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~ 183 (388)
T 1xip_A 113 LEELS-EFRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRS 183 (388)
T ss_dssp SSSTT-CEEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSC
T ss_pred chhhh-ccCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCc
Confidence 98876 45566677788888887755 2 6678889999999999887754 23689999999998 778999999
Q ss_pred EEEEECCCCeE--EEEE
Q 004885 706 ISILDVETQVC--RLKL 720 (725)
Q Consensus 706 V~IwDl~tg~~--v~~l 720 (725)
|++|+..++++ .++|
T Consensus 184 i~~~~~~~~~~~~k~~I 200 (388)
T 1xip_A 184 FQSFAWRNGEMEKQFEF 200 (388)
T ss_dssp EEEEEEETTEEEEEEEE
T ss_pred EEEEcCCCcccccccee
Confidence 99999998887 6777
No 190
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.17 E-value=1.8e-09 Score=115.01 Aligned_cols=183 Identities=13% Similarity=0.025 Sum_probs=132.0
Q ss_pred cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004885 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (725)
Q Consensus 507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~ 586 (725)
++.++...++.|.+|+.. +.+.+..+. .......++++++++++++...++.|.+||..+
T Consensus 55 ~lyv~~~~~~~v~viD~~-------------------t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t 114 (328)
T 3dsm_A 55 IGWIVVNNSHVIFAIDIN-------------------TFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT 114 (328)
T ss_dssp EEEEEEGGGTEEEEEETT-------------------TCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTT
T ss_pred EEEEEEcCCCEEEEEECc-------------------ccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCC
Confidence 344555556788888332 223444443 345688999998885555544899999999999
Q ss_pred CeEEEEeccCC-----CCeEEEEEcCCCCEEEEEe--CCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEE
Q 004885 587 FTVKSTLEEHT-----QWITDVRFSPSLSRLATSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (725)
Q Consensus 587 ~~~i~~l~~H~-----~~V~~IafsPd~~~Lasgs--~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSg 659 (725)
++.+..+.... .....|++ ++..|++++ .+++|.+||+.+.. .+..+.. ......++++|+|+ +++++
T Consensus 115 ~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~-~~~~i~~-g~~p~~i~~~~dG~-l~v~~ 189 (328)
T 3dsm_A 115 YEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDK-VVDELTI-GIQPTSLVMDKYNK-MWTIT 189 (328)
T ss_dssp TEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTE-EEEEEEC-SSCBCCCEECTTSE-EEEEB
T ss_pred CeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCe-EEEEEEc-CCCccceEEcCCCC-EEEEE
Confidence 98887765332 14567777 455666655 48899999999877 4555543 23457899999987 66666
Q ss_pred eCC----------CcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 004885 660 DNN----------SEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVC 716 (725)
Q Consensus 660 s~D----------g~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~ 716 (725)
..+ +.|.+||..+++.+..+.. ...+..++|+|++++|+++.. .|.+||+.+++.
T Consensus 190 ~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 190 DGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRV 256 (328)
T ss_dssp CCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSC
T ss_pred CCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCce
Confidence 544 7899999999998877765 346899999999999888755 899999988765
No 191
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.17 E-value=1.4e-08 Score=116.80 Aligned_cols=199 Identities=11% Similarity=0.074 Sum_probs=142.0
Q ss_pred CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEc----CCCCEEEEEeC-CCcEE
Q 004885 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS----PDGKLLATGGH-DKKAV 580 (725)
Q Consensus 506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fS----pdg~~LaSgs~-Dg~V~ 580 (725)
.+++.+++.|+.|.+|+.... +.+.+..+.... ....++|+ |||++++++.+ ++.|.
T Consensus 208 Gr~lyv~~~dg~V~viD~~~~-----------------t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ 269 (567)
T 1qks_A 208 GRYLFVIGRDGKVNMIDLWMK-----------------EPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYV 269 (567)
T ss_dssp SCEEEEEETTSEEEEEETTSS-----------------SCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEE
T ss_pred CCEEEEEcCCCeEEEEECCCC-----------------CCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEE
Confidence 347778888999999954211 113334444322 36789999 69998887765 58999
Q ss_pred EEECCCCeEEEEecc----------CCC-CeEEEEEcCCCCE-EEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEE
Q 004885 581 LWCTESFTVKSTLEE----------HTQ-WITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648 (725)
Q Consensus 581 IWdl~~~~~i~~l~~----------H~~-~V~~IafsPd~~~-Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~f 648 (725)
|+|..+.+.+.++.- |.. .+..|.+++++.. +++...+|.|.++|...................++.|
T Consensus 270 ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~ 349 (567)
T 1qks_A 270 IMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGL 349 (567)
T ss_dssp EEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEE
T ss_pred EEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceE
Confidence 999999988877642 222 6788888887655 4555567999999998765322223334456788999
Q ss_pred ccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCe---EEEE-EecCCCEEEEEE--cCCeEEEEECCC-------C
Q 004885 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGA---TQMR-FQPRLGRILAAA--IENYISILDVET-------Q 714 (725)
Q Consensus 649 sP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V---~sv~-fspdg~~Lla~s--~Dg~V~IwDl~t-------g 714 (725)
+|+++++++++..++.|.++|+.+++.+..+.. .... ..+. ++|+++.+++.+ .++.|.|+|..+ .
T Consensus 350 ~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~ 429 (567)
T 1qks_A 350 DGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAW 429 (567)
T ss_dssp CTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBT
T ss_pred CCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccC
Confidence 999999888888889999999999998877764 2111 1222 588877766655 368999999998 6
Q ss_pred eEEEEEeC
Q 004885 715 VCRLKLQV 722 (725)
Q Consensus 715 ~~v~~l~G 722 (725)
+.+.++++
T Consensus 430 kvv~~i~~ 437 (567)
T 1qks_A 430 KILDSFPA 437 (567)
T ss_dssp SEEEEEEC
T ss_pred EEEEEEec
Confidence 78888875
No 192
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.17 E-value=5.4e-10 Score=131.54 Aligned_cols=160 Identities=9% Similarity=0.004 Sum_probs=117.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCe--------
Q 004885 554 STSKVESCHFSPDGKLLATGGHDK-----KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT-------- 620 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSgs~Dg-----~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dgt-------- 620 (725)
|...+..++|||||++||.++.++ .|++||+.+++.+.....+ ..+..++|+||++.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccc
Confidence 444688999999999998776543 8999999998876543322 23678999999999999888766
Q ss_pred --------EEEEECCCCCee-eEEEe--cCCCCeEEEEEccCCCeEEEEEeC----CCcEEEEECCC------Ce-eEEE
Q 004885 621 --------VRVWDTENPDYS-LRTFT--GHSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINN------GS-CAGV 678 (725)
Q Consensus 621 --------IrvWDl~~~~~~-l~~~~--~h~~~V~sl~fsP~g~~llaSgs~----Dg~I~IwDl~t------~~-~v~~ 678 (725)
|++|++.++... ...+. .|...+..+.|+|+|++++++... +..|++||+.+ +. ....
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 281 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK 281 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence 999999876521 22333 245568899999999977766542 56899999986 43 3444
Q ss_pred Eec-CCCeEEEEEecCCCEEEEEEcC----CeEEEEECCCCe
Q 004885 679 FKC-QSGATQMRFQPRLGRILAAAIE----NYISILDVETQV 715 (725)
Q Consensus 679 ~~~-~~~V~sv~fspdg~~Lla~s~D----g~V~IwDl~tg~ 715 (725)
+.. ...+.. .|+|+|+.|+..+.+ +.|.+||+.++.
T Consensus 282 l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 322 (710)
T 2xdw_A 282 LIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPE 322 (710)
T ss_dssp EECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred eeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 443 334444 588999988877763 369999998873
No 193
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.16 E-value=7.9e-09 Score=112.69 Aligned_cols=170 Identities=9% Similarity=0.010 Sum_probs=124.2
Q ss_pred eEEEecCCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccC-------CCCeEEEEEcCCC
Q 004885 547 EFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSL 609 (725)
Q Consensus 547 ~~~~l~~H~~~V~~i~fSpdg~~LaSgs----------~Dg~V~IWdl~~~~~i~~l~~H-------~~~V~~IafsPd~ 609 (725)
.+..+.....+ .++|+|||++|+++. .++.|.+||..+.+.+..+.-- ......++|+||+
T Consensus 59 ~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG 136 (373)
T 2mad_H 59 ILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNN 136 (373)
T ss_pred EEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCC
Confidence 34445443333 899999999998885 3678999999988877766421 1234589999999
Q ss_pred CEEEEEeC--CCeEEEEECCCCCeeeEE-Eec------------------------------------------------
Q 004885 610 SRLATSSA--DRTVRVWDTENPDYSLRT-FTG------------------------------------------------ 638 (725)
Q Consensus 610 ~~Lasgs~--DgtIrvWDl~~~~~~l~~-~~~------------------------------------------------ 638 (725)
++|++++. +..|.++| .+++ .+.. +..
T Consensus 137 ~~l~v~n~~~~~~v~viD-~t~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~ 214 (373)
T 2mad_H 137 ADLLFFQFAAGPAVGLVV-QGGS-SDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNL 214 (373)
T ss_pred CEEEEEecCCCCeEEEEE-CCCC-EEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcce
Confidence 99998874 47899999 7765 2222 100
Q ss_pred --CC------------------------------------------------CCeEEEEEccCCCeEEEEEeC-------
Q 004885 639 --HS------------------------------------------------TTVMSLDFHPSKEDLLCSCDN------- 661 (725)
Q Consensus 639 --h~------------------------------------------------~~V~sl~fsP~g~~llaSgs~------- 661 (725)
+. .....+.|+|+++.++++...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~ 294 (373)
T 2mad_H 215 LTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLH 294 (373)
T ss_pred eecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCccccc
Confidence 00 001115667777777766541
Q ss_pred --CCcEEEEECCCCeeEEEEecCCCeEEEEEecCCC-EEEEEE-cCCeEEEEECCCCeEEEEE
Q 004885 662 --NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG-RILAAA-IENYISILDVETQVCRLKL 720 (725)
Q Consensus 662 --Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~-~Lla~s-~Dg~V~IwDl~tg~~v~~l 720 (725)
++.|.++|+.+++.+..+.......++.|+|||+ .++++. .++.|.|||+.+++.+.++
T Consensus 295 ~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 295 AAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred CCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 3579999999999999998777899999999999 677766 4899999999999999884
No 194
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.15 E-value=1.8e-08 Score=105.44 Aligned_cols=193 Identities=11% Similarity=0.033 Sum_probs=130.8
Q ss_pred cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004885 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (725)
Q Consensus 507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~ 586 (725)
.++.+...++.|..|...... . ..+ .+...+.+++|+++|+++++. +..|.+||.++
T Consensus 26 ~l~~~d~~~~~i~~~d~~~~~-----------------~---~~~-~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~ 82 (297)
T 3g4e_A 26 SLLFVDIPAKKVCRWDSFTKQ-----------------V---QRV-TMDAPVSSVALRQSGGYVATI--GTKFCALNWKE 82 (297)
T ss_dssp EEEEEETTTTEEEEEETTTCC-----------------E---EEE-ECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTT
T ss_pred EEEEEECCCCEEEEEECCCCc-----------------E---EEE-eCCCceEEEEECCCCCEEEEE--CCeEEEEECCC
Confidence 356666667888888432221 0 111 124569999999999955553 56899999988
Q ss_pred CeEEEEecc----CCCCeEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCC
Q 004885 587 FTVKSTLEE----HTQWITDVRFSPSLSRLATSSAD---------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 653 (725)
Q Consensus 587 ~~~i~~l~~----H~~~V~~IafsPd~~~Lasgs~D---------gtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~ 653 (725)
++....... ....+++++++|+++++++...+ ....||.+.... .+..+..+......++|+|+++
T Consensus 83 g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~~~pngi~~spdg~ 161 (297)
T 3g4e_A 83 QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQVDISNGLDWSLDHK 161 (297)
T ss_dssp TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEESBEEEEEECTTSC
T ss_pred CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeeccccccceEEcCCCC
Confidence 765433321 12458899999999977655322 334566555433 2333333445678999999999
Q ss_pred eEEEEEeCCCcEEEEEC--CCCeeE--EEE---ec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885 654 DLLCSCDNNSEIRYWSI--NNGSCA--GVF---KC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVS 723 (725)
Q Consensus 654 ~llaSgs~Dg~I~IwDl--~t~~~v--~~~---~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH 723 (725)
.++++.+.++.|.+||+ .++... ..+ .. ...+..++++++|..+++...++.|.+||.++|+++..+..+
T Consensus 162 ~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 162 IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence 88888877889999997 455432 122 11 345789999999877777667789999999999998888755
No 195
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.15 E-value=5.9e-09 Score=108.35 Aligned_cols=165 Identities=12% Similarity=0.136 Sum_probs=115.5
Q ss_pred CCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEE-ecc----CCCCeEEEEEcCCCCEEEEEeCC---------
Q 004885 554 STSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKST-LEE----HTQWITDVRFSPSLSRLATSSAD--------- 618 (725)
Q Consensus 554 H~~~V~~i~fSpd-g~~LaSgs~Dg~V~IWdl~~~~~i~~-l~~----H~~~V~~IafsPd~~~Lasgs~D--------- 618 (725)
+...+.+++++++ ++++++. .+..|.+||.+ ++.... ... ....+.+++++++++++++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred CCCCCceEEEecCCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence 4466899999999 6655554 44579999988 665433 221 12458899999999887776655
Q ss_pred ------CeEEEEECCCCCeeeEEEecCCCCeEEEEEc----cCCCeEEEEEeCCCcEEEEECC-CCeeE-----EEEecC
Q 004885 619 ------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFH----PSKEDLLCSCDNNSEIRYWSIN-NGSCA-----GVFKCQ 682 (725)
Q Consensus 619 ------gtIrvWDl~~~~~~l~~~~~h~~~V~sl~fs----P~g~~llaSgs~Dg~I~IwDl~-t~~~v-----~~~~~~ 682 (725)
+.|..||.. +. +..+..+......++|+ |+++.++++...++.|.+||+. ++... ..+...
T Consensus 147 ~~~~~~~~l~~~~~~-g~--~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~ 223 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-GQ--MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT 223 (314)
T ss_dssp TTSSSCEEEEEECTT-SC--EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred cccCCCCeEEEECCC-CC--EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCC
Confidence 567777765 33 33333344557889999 9987677777778899999986 45421 222222
Q ss_pred --CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885 683 --SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVS 723 (725)
Q Consensus 683 --~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH 723 (725)
..+..++++++|..+++...++.|.+||.++++.+..+..+
T Consensus 224 ~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~ 266 (314)
T 1pjx_A 224 HEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP 266 (314)
T ss_dssp SSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECS
T ss_pred CCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCC
Confidence 45888999999887777777899999999977766666544
No 196
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.14 E-value=3.3e-08 Score=101.37 Aligned_cols=160 Identities=13% Similarity=0.061 Sum_probs=116.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004885 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l 633 (725)
+...+.+++++++++++++...++.|..||.........+......+.+|++++++.++++...++.|.+||. ++....
T Consensus 55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~ 133 (299)
T 2z2n_A 55 PDAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIRE 133 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE
T ss_pred ccCceeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEE
Confidence 4467999999999998888777889999998632222222234567899999999988888777889999999 544222
Q ss_pred EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEE-Eec-CCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004885 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FKC-QSGATQMRFQPRLGRILAAAIENYISILDV 711 (725)
Q Consensus 634 ~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~-~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl 711 (725)
.....+...+.++++++++. ++++...++.|.+||. +++.... +.. ...+..+++++++..+++...++.|.+||.
T Consensus 134 ~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 211 (299)
T 2z2n_A 134 YELPNKGSYPSFITLGSDNA-LWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT 211 (299)
T ss_dssp EECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred ecCCCCCCCCceEEEcCCCC-EEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC
Confidence 22233456789999999986 6666666789999999 6665443 221 346889999999876555555789999999
Q ss_pred CCCeEE
Q 004885 712 ETQVCR 717 (725)
Q Consensus 712 ~tg~~v 717 (725)
+++..
T Consensus 212 -~g~~~ 216 (299)
T 2z2n_A 212 -SGEIT 216 (299)
T ss_dssp -TCCEE
T ss_pred -CCcEE
Confidence 66543
No 197
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.14 E-value=1.4e-09 Score=114.92 Aligned_cols=152 Identities=9% Similarity=0.051 Sum_probs=104.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCC-------cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC--------CeE
Q 004885 557 KVESCHFSPDGKLLATGGHDK-------KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--------RTV 621 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~Dg-------~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D--------gtI 621 (725)
.+.+++|+||| +++++..+. ...||.+++++. ..+..+ ..+..+ +|++++|+.++.+ ..|
T Consensus 172 ~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l 246 (347)
T 2gop_A 172 RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKL 246 (347)
T ss_dssp TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEE
T ss_pred CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceE
Confidence 68899999999 888876652 345554445444 344444 555554 9999988877754 367
Q ss_pred EEEECCCCCeeeEEEecCCCCeEE-EEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEE
Q 004885 622 RVWDTENPDYSLRTFTGHSTTVMS-LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA 700 (725)
Q Consensus 622 rvWDl~~~~~~l~~~~~h~~~V~s-l~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~ 700 (725)
.+|| ++. ......++...+.. +.|+ ++ ++++++.++.++|| +.+++....+.....|.+++|+| ..++++
T Consensus 247 ~~~d--~~~-~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~~ 317 (347)
T 2gop_A 247 YIYD--GKE-VMGILDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYLK 317 (347)
T ss_dssp EEEC--SSC-EEESSTTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEEE
T ss_pred EEEC--CCc-eEeccccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEEE
Confidence 7787 443 33334455677886 9999 76 77788889999999 87776655555566789999999 677777
Q ss_pred EcCCeE-EEEECCCCeEEEEEeCCC
Q 004885 701 AIENYI-SILDVETQVCRLKLQVSH 724 (725)
Q Consensus 701 s~Dg~V-~IwDl~tg~~v~~l~GH~ 724 (725)
+.++.. .||.+. ++ ...|..|.
T Consensus 318 ~~~~~~~~l~~~~-g~-~~~lt~~n 340 (347)
T 2gop_A 318 ETATRLRELFTWD-GE-EKQLTDYN 340 (347)
T ss_dssp ECSSSCCEEEEES-SS-EEECCCTT
T ss_pred cCCCChHHheEeC-Cc-EEEecccc
Confidence 776654 677666 55 44566654
No 198
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.12 E-value=4.2e-09 Score=112.17 Aligned_cols=157 Identities=10% Similarity=0.046 Sum_probs=114.5
Q ss_pred CeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC----------CeEEEE
Q 004885 557 KVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----------RTVRVW 624 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs--~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D----------gtIrvW 624 (725)
....+++ ++..|+++. .++.|.+||+.+++.+..+.. ......++++|++++++++..+ +.|.+|
T Consensus 132 ~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~i 208 (328)
T 3dsm_A 132 STEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRI 208 (328)
T ss_dssp BCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEE
T ss_pred CcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEE
Confidence 3556777 345555554 488999999999988877764 3346789999999877776654 789999
Q ss_pred ECCCCCeeeEEEecC-CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEE--Eec-CCCeEEEEEecCCCEEEEE
Q 004885 625 DTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV--FKC-QSGATQMRFQPRLGRILAA 700 (725)
Q Consensus 625 Dl~~~~~~l~~~~~h-~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~--~~~-~~~V~sv~fspdg~~Lla~ 700 (725)
|..+.. ....+... ......++|+|+++.++++ . +.|.+||+.+++.... +.. ......|+++|+++.|+++
T Consensus 209 d~~t~~-v~~~~~~~~g~~p~~la~~~d~~~lyv~-~--~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva 284 (328)
T 3dsm_A 209 DAETFT-VEKQFKFKLGDWPSEVQLNGTRDTLYWI-N--NDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVA 284 (328)
T ss_dssp ETTTTE-EEEEEECCTTCCCEEEEECTTSCEEEEE-S--SSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEE
T ss_pred ECCCCe-EEEEEecCCCCCceeEEEecCCCEEEEE-c--cEEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEE
Confidence 998876 44444422 2468999999998866654 3 2899999998776421 111 3568999999966666665
Q ss_pred E-----cCCeEEEEECCCCeEEEEEe
Q 004885 701 A-----IENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 701 s-----~Dg~V~IwDl~tg~~v~~l~ 721 (725)
. .++.|.+||.. ++.+.++.
T Consensus 285 ~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 285 DAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp ECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred cccccccCCEEEEECCC-CCEEEEEE
Confidence 4 47899999998 88888775
No 199
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.11 E-value=6.3e-08 Score=99.24 Aligned_cols=156 Identities=10% Similarity=0.052 Sum_probs=115.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004885 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~-~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~ 632 (725)
....+.++++.++++++++...++.|.+||. +++... .+..+...+.++++++++.++++...++.|.+||. ++...
T Consensus 97 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~ 174 (299)
T 2z2n_A 97 PDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDIT 174 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred cCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEE
Confidence 4557899999999998888777889999998 544433 23334567899999999988877777889999999 55522
Q ss_pred eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 004885 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISIL 709 (725)
Q Consensus 633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~---~~~V~sv~fspdg~~Lla~s~Dg~V~Iw 709 (725)
..........+.++++++++. ++++...++.|.+||. ++.... +.. ...+.+++++++|..+++...++.|.+|
T Consensus 175 ~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 251 (299)
T 2z2n_A 175 EFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRL 251 (299)
T ss_dssp EEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEE
T ss_pred EeeCCCCCCcceeEEECCCCC-EEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCEEEeccCCceEEEE
Confidence 222333445688999999987 6666666788999999 666443 322 3568999999998755554467899999
Q ss_pred ECCCCe
Q 004885 710 DVETQV 715 (725)
Q Consensus 710 Dl~tg~ 715 (725)
|. +++
T Consensus 252 d~-~g~ 256 (299)
T 2z2n_A 252 TS-NNI 256 (299)
T ss_dssp ET-TTE
T ss_pred CC-CCc
Confidence 98 454
No 200
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.10 E-value=7.7e-10 Score=130.01 Aligned_cols=159 Identities=11% Similarity=0.035 Sum_probs=114.2
Q ss_pred CCCCCeEEEEEcCCCCEEE-----EEeCCCcEEEEECCCCeEEEEeccCCCCe--EEEEEcCCCCEEEEEeCCCe-----
Q 004885 553 ASTSKVESCHFSPDGKLLA-----TGGHDKKAVLWCTESFTVKSTLEEHTQWI--TDVRFSPSLSRLATSSADRT----- 620 (725)
Q Consensus 553 ~H~~~V~~i~fSpdg~~La-----Sgs~Dg~V~IWdl~~~~~i~~l~~H~~~V--~~IafsPd~~~Lasgs~Dgt----- 620 (725)
+|...+.+++|||||++|| .|+.+..|++||+.+++.+. ..+...+ ..++|+||++.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 4555689999999999988 34445789999999887541 1122222 68999999999999998776
Q ss_pred --------EEEEECCCCCe---eeEEEecCCCCeEEEEEccCCCeEEEEEeCC-C--cEEEEECCCCeeEEEEecCCCeE
Q 004885 621 --------VRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-S--EIRYWSINNGSCAGVFKCQSGAT 686 (725)
Q Consensus 621 --------IrvWDl~~~~~---~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D-g--~I~IwDl~t~~~v~~~~~~~~V~ 686 (725)
|++|++.++.. .+.....|...+.++.|+|+|++++++...+ + .|++||..++...........+.
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 275 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKY 275 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCE
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceE
Confidence 99999988752 2222334556789999999999777665533 2 67777776666555555555666
Q ss_pred EEEEecCCCEEEEEEc----CCeEEEEECCCCe
Q 004885 687 QMRFQPRLGRILAAAI----ENYISILDVETQV 715 (725)
Q Consensus 687 sv~fspdg~~Lla~s~----Dg~V~IwDl~tg~ 715 (725)
...| ++|. +++.+. ++.|.+||+.++.
T Consensus 276 ~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 276 EVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp EEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCS
T ss_pred EEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCC
Confidence 7667 5666 555554 5789999998775
No 201
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.05 E-value=5e-09 Score=109.30 Aligned_cols=151 Identities=10% Similarity=0.038 Sum_probs=122.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecC-CCCe
Q 004885 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH-STTV 643 (725)
Q Consensus 566 dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~-~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h-~~~V 643 (725)
.+++|++++.|+.|.+||.++++.+..+..+. ..+.++.+.|++++|+ +.++.|..||. +++ .+..+..+ ...+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~-~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGR-ELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSC-EEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCC-EEEEEcCCCCccc
Confidence 46789999999999999999999999998766 5789999999999888 45788999999 666 56677654 3468
Q ss_pred EEEEEccCCCeEEEEEeC-CCcEEEEECCCCeeEEEEecC-------CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 004885 644 MSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQ-------SGATQMRFQPRLGRILAAAIENYISILDVETQV 715 (725)
Q Consensus 644 ~sl~fsP~g~~llaSgs~-Dg~I~IwDl~t~~~v~~~~~~-------~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~ 715 (725)
.++.+.++|..++ +.+. ++.|..+|. +++.+..+... .....+++.++|.+|++...++.|.+||.+ |+
T Consensus 80 ~~~~~~~dG~~lv-~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~ 156 (276)
T 3no2_A 80 QTARILPDGNALV-AWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ 156 (276)
T ss_dssp EEEEECTTSCEEE-EEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cccEECCCCCEEE-EecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence 8999999998544 5554 677878885 68888777632 234567789999999988889999999998 99
Q ss_pred EEEEEeCC
Q 004885 716 CRLKLQVS 723 (725)
Q Consensus 716 ~v~~l~GH 723 (725)
.+.++..+
T Consensus 157 ~~w~~~~~ 164 (276)
T 3no2_A 157 LLNSVKLS 164 (276)
T ss_dssp EEEEEECS
T ss_pred EEEEEECC
Confidence 99888753
No 202
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.03 E-value=1.3e-07 Score=100.58 Aligned_cols=162 Identities=12% Similarity=-0.017 Sum_probs=111.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc----CCCCeEEEEEcCCCCEEEEEeC------CCeEEEE
Q 004885 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE----HTQWITDVRFSPSLSRLATSSA------DRTVRVW 624 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~----H~~~V~~IafsPd~~~Lasgs~------DgtIrvW 624 (725)
...|.+++|+++|++++++ .+ .|.+||..+++....... ....+.+++++|+++++++... .+.|..+
T Consensus 89 ~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~ 166 (326)
T 2ghs_A 89 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV 166 (326)
T ss_dssp SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEE
Confidence 3569999999999877765 44 499999988775433221 1246889999999987766542 2345555
Q ss_pred ECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC--CC-ee-----EEEEec-CCCeEEEEEecCCC
Q 004885 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--NG-SC-----AGVFKC-QSGATQMRFQPRLG 695 (725)
Q Consensus 625 Dl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~--t~-~~-----v~~~~~-~~~V~sv~fspdg~ 695 (725)
| ++. +..+..+......++|+|+++.++++...++.|.+||+. ++ .. +..+.. ...+..++++++|.
T Consensus 167 ~--~g~--~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~ 242 (326)
T 2ghs_A 167 A--KGK--VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH 242 (326)
T ss_dssp E--TTE--EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC
T ss_pred e--CCc--EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC
Confidence 5 333 333333334678999999998777777777899999986 55 32 222221 34477899999987
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885 696 RILAAAIENYISILDVETQVCRLKLQVS 723 (725)
Q Consensus 696 ~Lla~s~Dg~V~IwDl~tg~~v~~l~GH 723 (725)
.+++...++.|.+||. +++.+..+..+
T Consensus 243 lwva~~~~~~v~~~d~-~g~~~~~i~~~ 269 (326)
T 2ghs_A 243 IWNARWGEGAVDRYDT-DGNHIARYEVP 269 (326)
T ss_dssp EEEEEETTTEEEEECT-TCCEEEEEECS
T ss_pred EEEEEeCCCEEEEECC-CCCEEEEEECC
Confidence 7766666789999998 57777766543
No 203
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.02 E-value=4.8e-08 Score=107.71 Aligned_cols=161 Identities=11% Similarity=0.066 Sum_probs=113.9
Q ss_pred EEEcCCCCEEEEEeCCC--cEEEEECCCCeEEEEe----ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE
Q 004885 561 CHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTL----EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (725)
Q Consensus 561 i~fSpdg~~LaSgs~Dg--~V~IWdl~~~~~i~~l----~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~ 634 (725)
++|++++++|+++..++ .|.+|+.........+ ..+...+.+++++|++..|+++..++.|+.||..++...+.
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence 99999999999988766 7999988765443344 22456788999999656666677789999999987762211
Q ss_pred E---EecCCCCe-E-EEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC---------------CCeEEEEEecCC
Q 004885 635 T---FTGHSTTV-M-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---------------SGATQMRFQPRL 694 (725)
Q Consensus 635 ~---~~~h~~~V-~-sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~---------------~~V~sv~fspdg 694 (725)
. ..++.... . .++|+|++..++++...++.|+.||.... ........ .....|+|+++|
T Consensus 256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG 334 (409)
T 3hrp_A 256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG 334 (409)
T ss_dssp EECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC
T ss_pred ecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC
Confidence 0 22222222 3 89999976778888778899999998743 22222211 247899999998
Q ss_pred CEEEEEE-cCCeEEEEECCCCeEEEEEeCC
Q 004885 695 GRILAAA-IENYISILDVETQVCRLKLQVS 723 (725)
Q Consensus 695 ~~Lla~s-~Dg~V~IwDl~tg~~v~~l~GH 723 (725)
..+++-. .++.|++||+.+++. .++.|+
T Consensus 335 ~lyvad~~~~~~I~~~~~~~G~v-~~~~g~ 363 (409)
T 3hrp_A 335 NFYIVDGFKGYCLRKLDILDGYV-STVAGQ 363 (409)
T ss_dssp CEEEEETTTTCEEEEEETTTTEE-EEEEEC
T ss_pred CEEEEeCCCCCEEEEEECCCCEE-EEEeCC
Confidence 8666666 678999999888864 445444
No 204
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.01 E-value=7.1e-09 Score=112.97 Aligned_cols=178 Identities=6% Similarity=-0.013 Sum_probs=127.6
Q ss_pred eeeeEEEecCCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccC-------CCCeEEEEEc
Q 004885 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFS 606 (725)
Q Consensus 544 ~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs----------~Dg~V~IWdl~~~~~i~~l~~H-------~~~V~~Iafs 606 (725)
+.+.+.++..-..+ .+.|+||+++++++. .++.|.+||+.+++.+.++... ......++|+
T Consensus 55 t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~S 132 (368)
T 1mda_H 55 CGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNC 132 (368)
T ss_dssp TTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEEC
T ss_pred CCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEc
Confidence 34555666544455 799999999888886 3789999999999999888643 1245689999
Q ss_pred CCCCEEEEEeC--CCeEEE--EECCC------CCe--------------------eeEEEec------CC----------
Q 004885 607 PSLSRLATSSA--DRTVRV--WDTEN------PDY--------------------SLRTFTG------HS---------- 640 (725)
Q Consensus 607 Pd~~~Lasgs~--DgtIrv--WDl~~------~~~--------------------~l~~~~~------h~---------- 640 (725)
||+++++++.. +..|.+ +|+.+ +.. ....+.. +.
T Consensus 133 pDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~v 212 (368)
T 1mda_H 133 ASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNC 212 (368)
T ss_dssp TTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCB
T ss_pred CCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeC
Confidence 99999999875 356888 87743 000 0000000 00
Q ss_pred ------------------CCe---------------------------------EEEEEccCCCeEEEEEe---C-----
Q 004885 641 ------------------TTV---------------------------------MSLDFHPSKEDLLCSCD---N----- 661 (725)
Q Consensus 641 ------------------~~V---------------------------------~sl~fsP~g~~llaSgs---~----- 661 (725)
+.| ..++|+|+++.++++.. .
T Consensus 213 g~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~ 292 (368)
T 1mda_H 213 SSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAA 292 (368)
T ss_dssp CSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSC
T ss_pred CCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCccccc
Confidence 000 01678999988887654 2
Q ss_pred CCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCE-EEEEE-cCCeEEEEECCCCeEEEEEeCC
Q 004885 662 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR-ILAAA-IENYISILDVETQVCRLKLQVS 723 (725)
Q Consensus 662 Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~-Lla~s-~Dg~V~IwDl~tg~~v~~l~GH 723 (725)
++.+.+||+.+.+.+..+........|+|+|||++ +++.. .++.|.|+|+.+++.+.+++..
T Consensus 293 ~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg 356 (368)
T 1mda_H 293 AENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD 356 (368)
T ss_dssp EEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred CCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC
Confidence 23566999999999998887668999999999985 45555 4899999999999999998744
No 205
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.00 E-value=1e-08 Score=113.67 Aligned_cols=174 Identities=11% Similarity=0.053 Sum_probs=128.8
Q ss_pred eeeeEEEecCCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccC-------CCCeEEEEEc
Q 004885 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFS 606 (725)
Q Consensus 544 ~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs----------~Dg~V~IWdl~~~~~i~~l~~H-------~~~V~~Iafs 606 (725)
+.+.+..+..-..+ .++++||+++|+++. .++.|.++|..+.+.+..+.-- ......+.|+
T Consensus 108 t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~s 185 (426)
T 3c75_H 108 TGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALT 185 (426)
T ss_dssp TTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEEC
T ss_pred CCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEc
Confidence 33555555544444 899999999888775 3678999999999988776421 1335678999
Q ss_pred CCCCEEEEEeC--CCeEEEEECCCCCeeeEEEec----------------------------------------------
Q 004885 607 PSLSRLATSSA--DRTVRVWDTENPDYSLRTFTG---------------------------------------------- 638 (725)
Q Consensus 607 Pd~~~Lasgs~--DgtIrvWDl~~~~~~l~~~~~---------------------------------------------- 638 (725)
||+++|+++.. +++|.+.|+.+.+ .+..+.-
T Consensus 186 pDGk~lyV~n~~~~~~VsVID~~t~k-vv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~ 264 (426)
T 3c75_H 186 PDNKNLLFYQFSPAPAVGVVDLEGKT-FDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDE 264 (426)
T ss_dssp TTSSEEEEEECSSSCEEEEEETTTTE-EEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTS
T ss_pred CCCCEEEEEecCCCCeEEEEECCCCe-EEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCC
Confidence 99999999875 5789999988754 1211110
Q ss_pred -------------------CCC---------------------------------CeEEEEEccCCCeEEEEEeC-----
Q 004885 639 -------------------HST---------------------------------TVMSLDFHPSKEDLLCSCDN----- 661 (725)
Q Consensus 639 -------------------h~~---------------------------------~V~sl~fsP~g~~llaSgs~----- 661 (725)
..+ ....++|+|+++.++++...
T Consensus 265 p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gt 344 (426)
T 3c75_H 265 LLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWK 344 (426)
T ss_dssp CBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTC
T ss_pred ceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccccc
Confidence 000 00015677777777776542
Q ss_pred ----CCcEEEEECCCCeeEEEEecCCCeEEEEEecCCC-EEEEEEc-CCeEEEEECCCCeEEEEE
Q 004885 662 ----NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG-RILAAAI-ENYISILDVETQVCRLKL 720 (725)
Q Consensus 662 ----Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~-~Lla~s~-Dg~V~IwDl~tg~~v~~l 720 (725)
++.|.++|+.+.+.+..+........|.|+||++ +++++.. ++.|.|+|+.+++.++++
T Consensus 345 hk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 345 HKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp TTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred ccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 3479999999999999998766799999999999 8888874 899999999999999997
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.97 E-value=4.2e-07 Score=93.05 Aligned_cols=159 Identities=9% Similarity=-0.006 Sum_probs=115.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 004885 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (725)
Q Consensus 553 ~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~-~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~ 631 (725)
.+...+.++++.++++++++...++.|.+||.. ++... .+......+.++++++++.++++...++.|..||.. +..
T Consensus 59 ~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~ 136 (300)
T 2qc5_A 59 TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI 136 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE
Confidence 344678999999999988877768899999987 54432 223344678999999999888877778899999987 442
Q ss_pred eeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeEEEEEecCCCEEEEEEcCCeEEE
Q 004885 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISI 708 (725)
Q Consensus 632 ~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~---~~~V~sv~fspdg~~Lla~s~Dg~V~I 708 (725)
....+......+.++++++++. ++++...++.|.+||. +++... +.. ...+..+++++++..+++....+.|.+
T Consensus 137 ~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 213 (300)
T 2qc5_A 137 YEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGR 213 (300)
T ss_dssp EEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred EEccCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEE
Confidence 2222233446789999999988 6666666788999998 555543 332 346899999999866555555678999
Q ss_pred EECCCCeEE
Q 004885 709 LDVETQVCR 717 (725)
Q Consensus 709 wDl~tg~~v 717 (725)
||. +++..
T Consensus 214 ~~~-~g~~~ 221 (300)
T 2qc5_A 214 ITT-TGEIS 221 (300)
T ss_dssp ECT-TCCEE
T ss_pred EcC-CCcEE
Confidence 998 55443
No 207
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.97 E-value=2.4e-08 Score=118.23 Aligned_cols=162 Identities=8% Similarity=0.002 Sum_probs=108.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCc--------------EEEEECCCCeE--EEEe--ccCCCCeEEEEEcCCCCEEEEEeCCC
Q 004885 558 VESCHFSPDGKLLATGGHDKK--------------AVLWCTESFTV--KSTL--EEHTQWITDVRFSPSLSRLATSSADR 619 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~--------------V~IWdl~~~~~--i~~l--~~H~~~V~~IafsPd~~~Lasgs~Dg 619 (725)
+..++|+|| +.|+.++.|+. |++|++.++.. ...+ ..+...+..+.|+||+++|+..+.++
T Consensus 211 ~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 289 (741)
T 1yr2_A 211 FSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEG 289 (741)
T ss_dssp SCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECT
T ss_pred eccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEcc
Confidence 357899999 98888887654 89999876541 2233 33444689999999999988776543
Q ss_pred -----eEEEEECCCCCee-eEEEecCCCCeEEEEEccCCCeEEEEEeC---CCcEEEEECCCC--eeEEEEec-CCCeEE
Q 004885 620 -----TVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDN---NSEIRYWSINNG--SCAGVFKC-QSGATQ 687 (725)
Q Consensus 620 -----tIrvWDl~~~~~~-l~~~~~h~~~V~sl~fsP~g~~llaSgs~---Dg~I~IwDl~t~--~~v~~~~~-~~~V~s 687 (725)
.|.+||+.++... ...+..+...+.... +|+|+.+++.... ++.|.+||+.++ .....+.. ...+..
T Consensus 290 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~ 368 (741)
T 1yr2_A 290 TDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLES 368 (741)
T ss_dssp TCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEE
T ss_pred CCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEE
Confidence 8999999876322 556666665565554 4888877766543 345999999874 44444444 233567
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECC-CCeEEEEEeC
Q 004885 688 MRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQV 722 (725)
Q Consensus 688 v~fspdg~~Lla~s~Dg~V~IwDl~-tg~~v~~l~G 722 (725)
++|. ++..+++...|+..+||.+. +++.++.+..
T Consensus 369 ~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~ 403 (741)
T 1yr2_A 369 VGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSL 403 (741)
T ss_dssp EEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBC
T ss_pred EEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccC
Confidence 7787 43455666668876666543 4566666653
No 208
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.97 E-value=1e-08 Score=121.41 Aligned_cols=166 Identities=10% Similarity=0.036 Sum_probs=113.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCe--------
Q 004885 554 STSKVESCHFSPDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT-------- 620 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSgs~D-----g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dgt-------- 620 (725)
|...+..++|||||++||.++.+ ..|++||+.+++.+... .+...+..++|+|| +.|+.++.|+.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 33458899999999998877654 36999999998876432 12222467899999 99888877654
Q ss_pred ------EEEEECCCCCee-eEEEec--CCCCeEEEEEccCCCeEEEEEeC----CCcEEEEECCCC--eeEEEEe-cCCC
Q 004885 621 ------VRVWDTENPDYS-LRTFTG--HSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINNG--SCAGVFK-CQSG 684 (725)
Q Consensus 621 ------IrvWDl~~~~~~-l~~~~~--h~~~V~sl~fsP~g~~llaSgs~----Dg~I~IwDl~t~--~~v~~~~-~~~~ 684 (725)
|++|++.++... ...+.. +...+..+.|+|+|+++++++.. +..|++||+.++ .+...+. ....
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 318 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA 318 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence 899999776521 223332 33458999999999977766642 348999999887 4133443 3444
Q ss_pred eEEEEEecCCCEEEEEEcC----CeEEEEECCCC--eEEEEEeC
Q 004885 685 ATQMRFQPRLGRILAAAIE----NYISILDVETQ--VCRLKLQV 722 (725)
Q Consensus 685 V~sv~fspdg~~Lla~s~D----g~V~IwDl~tg--~~v~~l~G 722 (725)
+... ++|+|+.|+..+.+ +.|.+||+.++ .....+.+
T Consensus 319 ~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~ 361 (741)
T 1yr2_A 319 QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE 361 (741)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC
Confidence 5444 45888988888764 45999999884 34444433
No 209
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.96 E-value=5.6e-07 Score=92.13 Aligned_cols=158 Identities=7% Similarity=-0.034 Sum_probs=113.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004885 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~-~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~ 632 (725)
....+.++++.++++++++...++.|.+||.. ++... .+......+.+++++++++++++...++.|.+||. ++...
T Consensus 102 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~ 179 (300)
T 2qc5_A 102 PDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLE 179 (300)
T ss_dssp TTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE
T ss_pred CCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEE
Confidence 34668999999999988887778899999987 55442 23334567899999999987666666889999998 44422
Q ss_pred eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEE-e-cCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004885 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-K-CQSGATQMRFQPRLGRILAAAIENYISILD 710 (725)
Q Consensus 633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~-~-~~~~V~sv~fspdg~~Lla~s~Dg~V~IwD 710 (725)
......+...+.++++++++. ++++....+.|.+||. ++...... . ....+.+|+++++|..+++...++.|.+||
T Consensus 180 ~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 257 (300)
T 2qc5_A 180 EYPLPTNAAAPVGITSGNDGA-LWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRIT 257 (300)
T ss_dssp EEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEC
T ss_pred EeeCCCCCCCcceEEECCCCC-EEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEEC
Confidence 222223445689999999886 6666666778999998 45544332 2 245689999999987555554578999999
Q ss_pred CCCCeE
Q 004885 711 VETQVC 716 (725)
Q Consensus 711 l~tg~~ 716 (725)
. +++.
T Consensus 258 ~-~g~~ 262 (300)
T 2qc5_A 258 N-DNTI 262 (300)
T ss_dssp T-TSCE
T ss_pred C-CCcE
Confidence 8 4543
No 210
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.94 E-value=1.2e-10 Score=126.59 Aligned_cols=187 Identities=10% Similarity=-0.017 Sum_probs=104.9
Q ss_pred CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004885 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (725)
Q Consensus 506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~ 585 (725)
+..+++++.|+.|..|+..++. .+-.++. +.+.+..+..++.++++++.|+.|+.||..
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~-------------------~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~ 67 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGS-------------------IKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSK 67 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCC-------------------EEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC---
T ss_pred CCEEEEEcCCCEEEEEECCCCC-------------------EEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECC
Confidence 3578889999999999654431 2222222 345555555678788888899999999999
Q ss_pred CCeEEEEeccCCC-CeE-EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC
Q 004885 586 SFTVKSTLEEHTQ-WIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (725)
Q Consensus 586 ~~~~i~~l~~H~~-~V~-~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg 663 (725)
+++.+..+..+.. .+. +..+. .+..|++++.|+.|+.||..+++ .+..+..+. .+.++|++. .+++++.|+
T Consensus 68 tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~-~~w~~~~~~----~~~~~p~~~-~v~~~~~dg 140 (369)
T 2hz6_A 68 NNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGE-KQQTLSSAF----ADSLSPSTS-LLYLGRTEY 140 (369)
T ss_dssp --CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEEE
T ss_pred CCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCc-EEEEecCCC----cccccccCC-EEEEEecCC
Confidence 8887766654321 111 00111 34578888889999999999987 454444332 245567666 555777789
Q ss_pred cEEEEECCCCeeEEEEecCCCeEEEEEecCC---CEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 664 EIRYWSINNGSCAGVFKCQSGATQMRFQPRL---GRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 664 ~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg---~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
.|+.||.++++.+..+.... .....+..+. ..+++++.|+.|++||.++|+++-++.
T Consensus 141 ~v~a~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 141 TITMYDTKTRELRWNATYFD-YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp EEECCCSSSSSCCCEEEEEE-ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EEEEEECCCCCEEEeEeccc-ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 99999999998877665311 2233344432 567788899999999999999887665
No 211
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.92 E-value=8.1e-08 Score=99.66 Aligned_cols=155 Identities=14% Similarity=0.247 Sum_probs=112.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCC---------------CcEEEEECCCCeEEEEeccCCCCeEEEEEc----CCCCEEEEE-
Q 004885 556 SKVESCHFSPDGKLLATGGHD---------------KKAVLWCTESFTVKSTLEEHTQWITDVRFS----PSLSRLATS- 615 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~D---------------g~V~IWdl~~~~~i~~l~~H~~~V~~Iafs----Pd~~~Lasg- 615 (725)
..+.+++++++|+++++...+ +.|..||.. ++.... ..+......++|+ |+++.|+.+
T Consensus 117 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~ 194 (314)
T 1pjx_A 117 QGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV-DTAFQFPNGIAVRHMNDGRPYQLIVAE 194 (314)
T ss_dssp BCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE-EEEESSEEEEEEEECTTSCEEEEEEEE
T ss_pred cCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe-ccCCCCcceEEEecccCCCCCEEEEEE
Confidence 358899999999988777655 567777765 544333 2334557889999 998766555
Q ss_pred eCCCeEEEEECC-CCCe----eeEEEecCC-CCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEE
Q 004885 616 SADRTVRVWDTE-NPDY----SLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQM 688 (725)
Q Consensus 616 s~DgtIrvWDl~-~~~~----~l~~~~~h~-~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv 688 (725)
..++.|.+||+. ++.. ....+.++. ..+..++++++|. ++++...++.|.+||..+++.+..+.. ...+.++
T Consensus 195 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i 273 (314)
T 1pjx_A 195 TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNL 273 (314)
T ss_dssp TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEE
T ss_pred CCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC-EEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeE
Confidence 467899999986 3321 122233333 5688999999987 666766688999999987777766665 3679999
Q ss_pred EEecCCCEEEEEEc-CCeEEEEECCC
Q 004885 689 RFQPRLGRILAAAI-ENYISILDVET 713 (725)
Q Consensus 689 ~fspdg~~Lla~s~-Dg~V~IwDl~t 713 (725)
+|++++.+|++++. ++.|.+|++..
T Consensus 274 ~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 274 HFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99999986666654 68999999875
No 212
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.90 E-value=5.5e-08 Score=114.34 Aligned_cols=153 Identities=12% Similarity=0.057 Sum_probs=110.4
Q ss_pred EEEEEcCCCCEEEEEeCCCc-------------EEEEECCCCe----EEEEecc-CCCCeEEEEEcCCCCEEEEEeC---
Q 004885 559 ESCHFSPDGKLLATGGHDKK-------------AVLWCTESFT----VKSTLEE-HTQWITDVRFSPSLSRLATSSA--- 617 (725)
Q Consensus 559 ~~i~fSpdg~~LaSgs~Dg~-------------V~IWdl~~~~----~i~~l~~-H~~~V~~IafsPd~~~Lasgs~--- 617 (725)
..++|+ |++.|+.++.|.. |++|++.+.. .+..... |...+..+.|+||+++|+....
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 256 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST 256 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence 567899 9999998888744 9999987653 3333333 5566889999999998755432
Q ss_pred -CCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC---CcEEEEECCCCee---EEEEecCCCeEEEEE
Q 004885 618 -DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGSC---AGVFKCQSGATQMRF 690 (725)
Q Consensus 618 -DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D---g~I~IwDl~t~~~---v~~~~~~~~V~sv~f 690 (725)
+..|.+||+.++......+..+...+... |++++..+++....+ +.|.++|+.++.+ .....+...+. .|
T Consensus 257 ~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~ 333 (693)
T 3iuj_A 257 SGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TV 333 (693)
T ss_dssp SCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EE
T ss_pred CCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EE
Confidence 35899999988754566677776666665 777888788777654 5799999988755 33333334444 89
Q ss_pred ecCCCEEEEEEcCC---eEEEEECCCCe
Q 004885 691 QPRLGRILAAAIEN---YISILDVETQV 715 (725)
Q Consensus 691 spdg~~Lla~s~Dg---~V~IwDl~tg~ 715 (725)
++++++|++...++ .|++||+.++.
T Consensus 334 s~~g~~lv~~~~~~g~~~l~~~d~~g~~ 361 (693)
T 3iuj_A 334 HSGSGYLFAEYMVDATARVEQFDYEGKR 361 (693)
T ss_dssp EEETTEEEEEEEETTEEEEEEECTTSCE
T ss_pred EEECCEEEEEEEECCeeEEEEEECCCCe
Confidence 99999888877643 68999998553
No 213
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.87 E-value=2.9e-07 Score=96.41 Aligned_cols=204 Identities=9% Similarity=0.027 Sum_probs=130.3
Q ss_pred CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (725)
Q Consensus 477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~ 556 (725)
.+..-....+|++++. .++.++..++.|..|.. ++ .+..+..+..
T Consensus 42 ~~~~~~egp~~~~~g~--------------~l~~~d~~~~~i~~~~~-~g--------------------~~~~~~~~~~ 86 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQR--------------TLVWSDLVGRRVLGWRE-DG--------------------TVDVLLDATA 86 (305)
T ss_dssp CCCSSEEEEEEEGGGT--------------EEEEEETTTTEEEEEET-TS--------------------CEEEEEESCS
T ss_pred cCCcCccCCeEeCCCC--------------EEEEEECCCCEEEEEeC-CC--------------------CEEEEeCCCC
Confidence 3444455667777664 35666667788888832 11 0122334556
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccC----CCCeEEEEEcCCCCEEEE----EeC-----------
Q 004885 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH----TQWITDVRFSPSLSRLAT----SSA----------- 617 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H----~~~V~~IafsPd~~~Las----gs~----------- 617 (725)
.+.+++|+++|+++++...++.|.+|+.+ ++........ ...+.+++++|++++++| |..
T Consensus 87 ~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~ 165 (305)
T 3dr2_A 87 FTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPE 165 (305)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCS
T ss_pred ccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccc
Confidence 78999999999977666566889999986 4433222111 234678999999998886 332
Q ss_pred --CCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeC-----CCcEEEEECCCCeeE--EEEe--cCCCeE
Q 004885 618 --DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----NSEIRYWSINNGSCA--GVFK--CQSGAT 686 (725)
Q Consensus 618 --DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~-----Dg~I~IwDl~t~~~v--~~~~--~~~~V~ 686 (725)
.+.|..||..++.. ..+. .......++|+|+++.++++... ++.|++||+..+... ..+. ....+.
T Consensus 166 ~~~~~v~~~d~~~g~~--~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pd 242 (305)
T 3dr2_A 166 LAHHSVYRLPPDGSPL--QRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPD 242 (305)
T ss_dssp SSCEEEEEECSSSCCC--EEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCC
T ss_pred cCCCeEEEEcCCCCcE--EEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCC
Confidence 24677777766652 2222 33567889999999866655543 268999998765421 1121 134466
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885 687 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQV 722 (725)
Q Consensus 687 sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~G 722 (725)
.++++++|. |.++.. +.|.+||. .++.+..+..
T Consensus 243 gi~~d~~G~-lwv~~~-~gv~~~~~-~g~~~~~~~~ 275 (305)
T 3dr2_A 243 GFCVDRGGW-LWSSSG-TGVCVFDS-DGQLLGHIPT 275 (305)
T ss_dssp SEEECTTSC-EEECCS-SEEEEECT-TSCEEEEEEC
T ss_pred eEEECCCCC-EEEecC-CcEEEECC-CCCEEEEEEC
Confidence 789999987 444444 45999998 5777766654
No 214
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.85 E-value=3.4e-07 Score=95.56 Aligned_cols=145 Identities=12% Similarity=0.157 Sum_probs=102.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCC---------CcEEEEECCC-CeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEE
Q 004885 556 SKVESCHFSPDGKLLATGGHD---------KKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVW 624 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~D---------g~V~IWdl~~-~~~i~~l~~H~~~V~~IafsPd~~~Lasg-s~DgtIrvW 624 (725)
..+.+++++|+|+++++...+ ....||.++. ++.. .+..+....+.++|+|+++.|+.+ +.++.|.+|
T Consensus 98 ~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~ 176 (297)
T 3g4e_A 98 NRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK-KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAF 176 (297)
T ss_dssp EEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEE
T ss_pred CCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEE-EEeeccccccceEEcCCCCEEEEecCCCCcEEEE
Confidence 347899999999977655322 2345555543 3333 233344567899999999877554 557899999
Q ss_pred ECC--CCCe----eeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-CCeEEEEEe-cCCCE
Q 004885 625 DTE--NPDY----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQ-PRLGR 696 (725)
Q Consensus 625 Dl~--~~~~----~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~-~~V~sv~fs-pdg~~ 696 (725)
|++ ++.. .+..+..+......++++++|. ++++...++.|.+||..+++.+..+... ..+++++|. |+++.
T Consensus 177 ~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~ 255 (297)
T 3g4e_A 177 DYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSE 255 (297)
T ss_dssp EECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCE
T ss_pred eccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCE
Confidence 974 4431 1122233345688999999986 7777777788999999999999888864 679999998 88888
Q ss_pred EEEEEc
Q 004885 697 ILAAAI 702 (725)
Q Consensus 697 Lla~s~ 702 (725)
|++++.
T Consensus 256 L~vt~~ 261 (297)
T 3g4e_A 256 MYVTCA 261 (297)
T ss_dssp EEEEEB
T ss_pred EEEEcC
Confidence 777654
No 215
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.85 E-value=4.2e-07 Score=100.16 Aligned_cols=155 Identities=12% Similarity=0.026 Sum_probs=108.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE----eccCCCCe--EEEEEcCC-CCEEEEEeCCCeEEEEEC
Q 004885 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST----LEEHTQWI--TDVRFSPS-LSRLATSSADRTVRVWDT 626 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~----l~~H~~~V--~~IafsPd-~~~Lasgs~DgtIrvWDl 626 (725)
+...+.+++++|++..|+++..++.|+.||..++..... ..++.... ..++|+|+ +.++++...++.|+.||.
T Consensus 217 ~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~ 296 (409)
T 3hrp_A 217 FSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITP 296 (409)
T ss_dssp SCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred hcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEec
Confidence 456688999999555566677789999999987654332 22222222 39999995 555555566889999998
Q ss_pred CCCCeeeEEEecCC---------------CCeEEEEEccCCCeEEEEEe-CCCcEEEEECCCCeeEEEEec---------
Q 004885 627 ENPDYSLRTFTGHS---------------TTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFKC--------- 681 (725)
Q Consensus 627 ~~~~~~l~~~~~h~---------------~~V~sl~fsP~g~~llaSgs-~Dg~I~IwDl~t~~~v~~~~~--------- 681 (725)
+.. +..+.++. .....++|+|+|. ++++-. .+++|+.||+.++........
T Consensus 297 ~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g 372 (409)
T 3hrp_A 297 DGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDG 372 (409)
T ss_dssp TCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCB
T ss_pred CCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCC
Confidence 753 33443332 3478999999988 777777 788999999888875444332
Q ss_pred ------CCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885 682 ------QSGATQMRFQPRLGRILAAAIENYISILDVE 712 (725)
Q Consensus 682 ------~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~ 712 (725)
-.....|++++++..+++-..++.|+.++++
T Consensus 373 ~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 373 TPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp STTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred ChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 1348899999996555555557888888764
No 216
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.81 E-value=5.2e-08 Score=114.56 Aligned_cols=160 Identities=13% Similarity=0.091 Sum_probs=111.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEE-----eCCCcEEEEECCCCeEEEE-eccCCCCeEEEEEcCCCCEEEEEeCCC-------
Q 004885 553 ASTSKVESCHFSPDGKLLATG-----GHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADR------- 619 (725)
Q Consensus 553 ~H~~~V~~i~fSpdg~~LaSg-----s~Dg~V~IWdl~~~~~i~~-l~~H~~~V~~IafsPd~~~Lasgs~Dg------- 619 (725)
+|...|..++|||||++||.+ +++..|+|||+.+++.+.. +.+ .....++|+ |++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCccccccc
Confidence 455568899999999988843 2335799999999886543 221 113577899 999999888774
Q ss_pred ------eEEEEECCCCCe---eeEEEec-CCCCeEEEEEccCCCeEEEEEeCC---CcEEEEECCCCe-eEEEEec-CCC
Q 004885 620 ------TVRVWDTENPDY---SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGS-CAGVFKC-QSG 684 (725)
Q Consensus 620 ------tIrvWDl~~~~~---~l~~~~~-h~~~V~sl~fsP~g~~llaSgs~D---g~I~IwDl~t~~-~v~~~~~-~~~ 684 (725)
.|++|++.++.. ++..... |...+.++.|+|+|++++++...+ ..|++||+.++. ....+.. ...
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~ 282 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA 282 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence 399999987652 2222233 455678999999999887776533 589999998763 3334433 344
Q ss_pred eEEEEEecCCCEEEEEEc-C---CeEEEEECCCCeE
Q 004885 685 ATQMRFQPRLGRILAAAI-E---NYISILDVETQVC 716 (725)
Q Consensus 685 V~sv~fspdg~~Lla~s~-D---g~V~IwDl~tg~~ 716 (725)
.... |+++++.|+..+. + +.|.++|+.++.+
T Consensus 283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~ 317 (693)
T 3iuj_A 283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP 317 (693)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc
Confidence 4444 7777787776655 2 6799999988754
No 217
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.76 E-value=7.5e-06 Score=83.68 Aligned_cols=162 Identities=7% Similarity=-0.027 Sum_probs=113.5
Q ss_pred CCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEECCCCCe
Q 004885 556 SKVESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDY 631 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSg-s~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~---DgtIrvWDl~~~~~ 631 (725)
....++++++++..|+.+ ...+.|.+++.+.......+.........++++|++..|+.+.. .+.|.+++++...
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~- 157 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN- 157 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-
Confidence 467899999976655544 45679999998754332223322356789999997676666654 3688888887543
Q ss_pred eeEEE-ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEc-CCeEEEE
Q 004885 632 SLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISIL 709 (725)
Q Consensus 632 ~l~~~-~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~-Dg~V~Iw 709 (725)
...+ .........+++++++..++++....+.|.++|+........+........|++. ++.|+++.. .+.|.++
T Consensus 158 -~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~ 234 (267)
T 1npe_A 158 -RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAM 234 (267)
T ss_dssp -CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred -cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEE
Confidence 2222 2233467899999998888888878889999999865544444433445677764 466666665 5899999
Q ss_pred ECCCCeEEEEEe
Q 004885 710 DVETQVCRLKLQ 721 (725)
Q Consensus 710 Dl~tg~~v~~l~ 721 (725)
|..+++.+.++.
T Consensus 235 d~~~g~~~~~i~ 246 (267)
T 1npe_A 235 DLAISKEMDTFH 246 (267)
T ss_dssp ETTTTEEEEEEC
T ss_pred eCCCCCceEEEc
Confidence 999999998885
No 218
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.73 E-value=5.9e-07 Score=94.02 Aligned_cols=159 Identities=8% Similarity=0.059 Sum_probs=114.3
Q ss_pred EecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004885 550 LIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (725)
Q Consensus 550 ~l~~H~~~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~ 628 (725)
.+..........+|+++++ ++++...++.|..|+.. ++ +..+..+...+..++++++++++++...++.|.+||.+
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~- 115 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD- 115 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-
Confidence 3444556678999999998 66777778999999984 44 34555567789999999999866665566889999986
Q ss_pred CCeeeEEEecC-----CCCeEEEEEccCCCeEEEE----EeC-------------CCcEEEEECCCCeeEEEEecCCCeE
Q 004885 629 PDYSLRTFTGH-----STTVMSLDFHPSKEDLLCS----CDN-------------NSEIRYWSINNGSCAGVFKCQSGAT 686 (725)
Q Consensus 629 ~~~~l~~~~~h-----~~~V~sl~fsP~g~~llaS----gs~-------------Dg~I~IwDl~t~~~v~~~~~~~~V~ 686 (725)
+. +..+..+ ...+.+++++|+|. ++++ +.. .+.|+.||..+++..... ......
T Consensus 116 g~--~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~ 191 (305)
T 3dr2_A 116 GQ--AHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPN 191 (305)
T ss_dssp SC--EEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEE
T ss_pred CC--EEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCc
Confidence 44 2222211 13467899999998 5554 221 246888888777655444 435678
Q ss_pred EEEEecCCCEEEEEEcC------CeEEEEECCCCe
Q 004885 687 QMRFQPRLGRILAAAIE------NYISILDVETQV 715 (725)
Q Consensus 687 sv~fspdg~~Lla~s~D------g~V~IwDl~tg~ 715 (725)
.++|+|+++.|+++... +.|.+||+..+.
T Consensus 192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~ 226 (305)
T 3dr2_A 192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA 226 (305)
T ss_dssp EEEECTTSSEEEEEECCC---CCCEEEEEEEETTE
T ss_pred ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC
Confidence 89999999988887765 789999987654
No 219
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.71 E-value=1.7e-06 Score=95.81 Aligned_cols=200 Identities=14% Similarity=0.138 Sum_probs=135.0
Q ss_pred CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEec-------CCCCCeEEEEEcCCCCEEEEEeCC-
Q 004885 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-------ASTSKVESCHFSPDGKLLATGGHD- 576 (725)
Q Consensus 505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~H~~~V~~i~fSpdg~~LaSgs~D- 576 (725)
...+++.|-.++.|.+++...+.. ..+.+++++ .-...-..+.++|+| +++++..+
T Consensus 95 r~~l~v~~l~s~~I~viD~~t~p~---------------~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~ 158 (462)
T 2ece_A 95 RRFLIVPGLRSSRIYIIDTKPNPR---------------EPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNE 158 (462)
T ss_dssp SCEEEEEBTTTCCEEEEECCSCTT---------------SCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEET
T ss_pred CCEEEEccCCCCeEEEEECCCCCC---------------CceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCc
Confidence 345666777788999996533211 112222221 000123457788999 77776655
Q ss_pred -----CcEEEEECCCCeEEEEeccCC---CCeEEEEEcCCCCEEEEEe-------------------CCCeEEEEECCCC
Q 004885 577 -----KKAVLWCTESFTVKSTLEEHT---QWITDVRFSPSLSRLATSS-------------------ADRTVRVWDTENP 629 (725)
Q Consensus 577 -----g~V~IWdl~~~~~i~~l~~H~---~~V~~IafsPd~~~Lasgs-------------------~DgtIrvWDl~~~ 629 (725)
+.|.++|..+++.+.++..-. ..-+++.|+|+++.+++.. .+.+|.+||+.+.
T Consensus 159 ~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~ 238 (462)
T 2ece_A 159 EGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR 238 (462)
T ss_dssp TSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred CCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC
Confidence 789999999999999886322 2245688999999998885 3689999999986
Q ss_pred CeeeEEEecC-C-CCeEEEEE--ccCCCeEEEEEe-----CCCcEEEEECCCCeeE--EEE--ec---------------
Q 004885 630 DYSLRTFTGH-S-TTVMSLDF--HPSKEDLLCSCD-----NNSEIRYWSINNGSCA--GVF--KC--------------- 681 (725)
Q Consensus 630 ~~~l~~~~~h-~-~~V~sl~f--sP~g~~llaSgs-----~Dg~I~IwDl~t~~~v--~~~--~~--------------- 681 (725)
+ .+.++..- . .....|.| +|++++.++++. .+++|.+|..+.+... ..+ ..
T Consensus 239 k-~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~ 317 (462)
T 2ece_A 239 K-RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFK 317 (462)
T ss_dssp E-EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGT
T ss_pred c-EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccc
Confidence 5 55555532 1 23445656 999998888887 7888988776554321 111 10
Q ss_pred --CCCeEEEEEecCCCEEEEEEc-CCeEEEEECC---CCeEEEEEe
Q 004885 682 --QSGATQMRFQPRLGRILAAAI-ENYISILDVE---TQVCRLKLQ 721 (725)
Q Consensus 682 --~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~---tg~~v~~l~ 721 (725)
...+..|.+++||++|+++.. .+.|.+||+. +.+.+..+.
T Consensus 318 ~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~ 363 (462)
T 2ece_A 318 AVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVK 363 (462)
T ss_dssp EECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEE
T ss_pred cCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEE
Confidence 134788999999999988877 6899999985 336666554
No 220
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.68 E-value=5.9e-07 Score=98.15 Aligned_cols=152 Identities=11% Similarity=0.016 Sum_probs=114.1
Q ss_pred EEEcCCCCEEEEEeC-----CCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEE
Q 004885 561 CHFSPDGKLLATGGH-----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWD 625 (725)
Q Consensus 561 i~fSpdg~~LaSgs~-----Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs----------~DgtIrvWD 625 (725)
....|+++.+++... ++.|.++|..+.+.+..+..-..+ . ++++||++++++++ .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 445789998888765 679999999999999888754555 4 99999999988876 367899999
Q ss_pred CCCCCeeeEEEecC-------CCCeEEEEEccCCCeEEEEEeC-CCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEE
Q 004885 626 TENPDYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 697 (725)
Q Consensus 626 l~~~~~~l~~~~~h-------~~~V~sl~fsP~g~~llaSgs~-Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~L 697 (725)
..+.+ .+..+.-. ......+.|+|+|++++++... ++.|.++|+.+++.+.++...+ + ...+....+.+
T Consensus 116 ~~t~~-v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g-~-~~~~P~g~~~~ 192 (386)
T 3sjl_D 116 PVTLL-PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-C-YHIFPTAPDTF 192 (386)
T ss_dssp TTTCC-EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-E-EEEEEEETTEE
T ss_pred CCCCe-EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC-c-ceeecCCCcee
Confidence 99987 55555321 1245679999999988877643 6899999999999999987533 2 22233334566
Q ss_pred EEEEcCCeEEEEECCC-CeEE
Q 004885 698 LAAAIENYISILDVET-QVCR 717 (725)
Q Consensus 698 la~s~Dg~V~IwDl~t-g~~v 717 (725)
++.+.||.+.++++.+ ++.+
T Consensus 193 ~~~~~DG~~~~v~~~~~g~v~ 213 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGTEGTPE 213 (386)
T ss_dssp EEEETTSCEEEEECCSSSCCE
T ss_pred EEECCCCCEEEEECCCCCeEE
Confidence 7777888888888876 5543
No 221
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.67 E-value=1.5e-06 Score=94.85 Aligned_cols=155 Identities=11% Similarity=0.065 Sum_probs=108.0
Q ss_pred CCCEEEEEeCCCcEEEEECCC-CeEEEEeccC----CCCeE-EEEEc-CCCCEEEEEeCCCeEEEEECCCCCe-eeEEEe
Q 004885 566 DGKLLATGGHDKKAVLWCTES-FTVKSTLEEH----TQWIT-DVRFS-PSLSRLATSSADRTVRVWDTENPDY-SLRTFT 637 (725)
Q Consensus 566 dg~~LaSgs~Dg~V~IWdl~~-~~~i~~l~~H----~~~V~-~Iafs-Pd~~~Lasgs~DgtIrvWDl~~~~~-~l~~~~ 637 (725)
..+.+++.+.||++.+.++.+ ++.+.....+ ..++. ...|. +++++++ .+.+++|.+.|+.+... .+..+.
T Consensus 188 g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~ 266 (386)
T 3sjl_D 188 APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVE 266 (386)
T ss_dssp ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEE
T ss_pred CCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeeccee
Confidence 455677778899988888876 5543322111 12222 24564 5675555 55689999999976541 111111
Q ss_pred ---------c-CCCCeEEEEEccCCCeEEEEEeC---------CCcEEEEECCCCeeEEEEecCCCeEEEEEecCCC-EE
Q 004885 638 ---------G-HSTTVMSLDFHPSKEDLLCSCDN---------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG-RI 697 (725)
Q Consensus 638 ---------~-h~~~V~sl~fsP~g~~llaSgs~---------Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~-~L 697 (725)
+ ..+.+..++++++++.++++-.. ..+|.++|+.+++.+..+.....+.+|.|++|++ +|
T Consensus 267 ~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~l 346 (386)
T 3sjl_D 267 ALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLL 346 (386)
T ss_dssp SSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEE
T ss_pred ccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEE
Confidence 0 11233457789999988876532 2479999999999999998877899999999997 66
Q ss_pred EEEEc-CCeEEEEECCCCeEEEEEe
Q 004885 698 LAAAI-ENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 698 la~s~-Dg~V~IwDl~tg~~v~~l~ 721 (725)
+++.. ++.|.|+|..+++.+++++
T Consensus 347 y~tn~~~~~VsViD~~t~k~~~~i~ 371 (386)
T 3sjl_D 347 YALSTGDKTLYIHDAESGEELRSVN 371 (386)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEEC
T ss_pred EEEcCCCCeEEEEECCCCcEEEEec
Confidence 66554 8999999999999999886
No 222
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.67 E-value=5e-06 Score=88.11 Aligned_cols=143 Identities=11% Similarity=0.061 Sum_probs=98.8
Q ss_pred CCeEEEEEcCCCCEEEEEeC------CCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECC-
Q 004885 556 SKVESCHFSPDGKLLATGGH------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTE- 627 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~------Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasg-s~DgtIrvWDl~- 627 (725)
..+.+++++|+|+++++... .+.|..++ +++.. .+..+......++|+|+++.|+.+ +.++.|.+||++
T Consensus 134 ~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~ 210 (326)
T 2ghs_A 134 NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDA 210 (326)
T ss_dssp EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCT
T ss_pred CCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEccc
Confidence 35889999999997765542 24566666 45443 333334567899999999877655 457899999986
Q ss_pred -CC-Ce----eeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEe-cCCCEEEE
Q 004885 628 -NP-DY----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQ-PRLGRILA 699 (725)
Q Consensus 628 -~~-~~----~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fs-pdg~~Lla 699 (725)
++ .. .+..+......+..++++++|. ++++...++.|.+||. +++.+..+.. ...+++++|. ++++.|++
T Consensus 211 ~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~v 288 (326)
T 2ghs_A 211 RTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLV 288 (326)
T ss_dssp TTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEE
T ss_pred ccCCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEE
Confidence 44 21 1222223345678899999987 6656655688999998 5777777765 3469999998 88888776
Q ss_pred EEcC
Q 004885 700 AAIE 703 (725)
Q Consensus 700 ~s~D 703 (725)
++..
T Consensus 289 t~~~ 292 (326)
T 2ghs_A 289 TSAR 292 (326)
T ss_dssp EEBC
T ss_pred EecC
Confidence 6553
No 223
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.64 E-value=2.4e-09 Score=116.35 Aligned_cols=148 Identities=15% Similarity=0.084 Sum_probs=84.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCC-CeE
Q 004885 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST-TVM 644 (725)
Q Consensus 566 dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~-~V~ 644 (725)
++..|++++.|+.|+.||..+++.+..+.. ..+.+..+..++..+++++.|+.|+.||..+++ .+..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~-~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNE-GLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----C-CSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCc-eeeeeeccCccccc
Confidence 578899999999999999999999988876 456555566677788888899999999998877 3333332211 010
Q ss_pred -EEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 645 -SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 645 -sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
+..+. .+. .+++++.|+.|+.||.++|+.+..+.... .+.++|+++.+++++.|+.|+.||.++|+++-++.
T Consensus 85 ~sp~~~-~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 157 (369)
T 2hz6_A 85 ASPCRS-SDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT 157 (369)
T ss_dssp TCSCC-------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred cCceEe-cCC-EEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence 01111 223 45567778999999999999988776533 24566788899999999999999999998765543
No 224
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.63 E-value=2e-06 Score=93.53 Aligned_cols=148 Identities=12% Similarity=-0.002 Sum_probs=107.8
Q ss_pred EcCCCCEEEEEeC--CC---cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEECC
Q 004885 563 FSPDGKLLATGGH--DK---KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTE 627 (725)
Q Consensus 563 fSpdg~~LaSgs~--Dg---~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs----------~DgtIrvWDl~ 627 (725)
..|++++++++.. .. +|.+||..+++.+..+..-..+ .++|+||+++|+++. .++.|.+||..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 3467777776653 22 8899999999988887654443 999999999999886 36789999998
Q ss_pred CCCeeeEEEecC-------CCCeEEEEEccCCCeEEEEEeC-CCcEEEEECCCCeeEEE-EecCCCeEEEEEecCCC-EE
Q 004885 628 NPDYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGV-FKCQSGATQMRFQPRLG-RI 697 (725)
Q Consensus 628 ~~~~~l~~~~~h-------~~~V~sl~fsP~g~~llaSgs~-Dg~I~IwDl~t~~~v~~-~~~~~~V~sv~fspdg~-~L 697 (725)
+.+ .+..+... ......+.|+|+|++++++... ++.|.++| .+++.+.. +..... +.+.|++. .+
T Consensus 106 t~~-~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~ 180 (373)
T 2mad_H 106 TFL-PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTF 180 (373)
T ss_pred CCc-EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceE
Confidence 776 44444321 1234579999999988776644 57899999 99998888 654332 44556554 44
Q ss_pred EEEEcCCeEEEEECCCCeEEE
Q 004885 698 LAAAIENYISILDVETQVCRL 718 (725)
Q Consensus 698 la~s~Dg~V~IwDl~tg~~v~ 718 (725)
++.+.||.+.+||. +++.+.
T Consensus 181 ~~~~~dg~~~~vd~-~g~~~~ 200 (373)
T 2mad_H 181 YLLCAQGGLAKTDH-AGGAAG 200 (373)
T ss_pred EEEcCCCCEEEEEC-CCcEEE
Confidence 55667899999999 876663
No 225
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.63 E-value=2.3e-06 Score=100.72 Aligned_cols=164 Identities=9% Similarity=0.029 Sum_probs=118.4
Q ss_pred EEEEEcCCCCEEEEEeCCCc-------------------EEEEECCCCeEEEEecc--CC-------CCeEEEEEcCCCC
Q 004885 559 ESCHFSPDGKLLATGGHDKK-------------------AVLWCTESFTVKSTLEE--HT-------QWITDVRFSPSLS 610 (725)
Q Consensus 559 ~~i~fSpdg~~LaSgs~Dg~-------------------V~IWdl~~~~~i~~l~~--H~-------~~V~~IafsPd~~ 610 (725)
..++++|++.+|+.+..++. |..||.++++.+..+.. |. ..+....+..+++
T Consensus 238 ~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 238 DSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred cceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence 46888998889998887764 99999999999988754 21 1222222223554
Q ss_pred ---EEEEEeCCCeEEEEECCCCCeeeEEEec-CCCC--------------------------------------eEEEEE
Q 004885 611 ---RLATSSADRTVRVWDTENPDYSLRTFTG-HSTT--------------------------------------VMSLDF 648 (725)
Q Consensus 611 ---~Lasgs~DgtIrvWDl~~~~~~l~~~~~-h~~~--------------------------------------V~sl~f 648 (725)
.|+.++.+|.|+++|.++++ .+..... .... -..++|
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~-~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~ 396 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGE-LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSY 396 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCC-EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEE
T ss_pred EEEEEEEECCCCeEEEEECCCCC-EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceE
Confidence 78889999999999999988 3321110 0000 112688
Q ss_pred ccCCCeEEEEEeC--------------------------------------------CCcEEEEECCCCeeEEEEecCCC
Q 004885 649 HPSKEDLLCSCDN--------------------------------------------NSEIRYWSINNGSCAGVFKCQSG 684 (725)
Q Consensus 649 sP~g~~llaSgs~--------------------------------------------Dg~I~IwDl~t~~~v~~~~~~~~ 684 (725)
+|+...+++.... +|.|+.||+.+++.+..++....
T Consensus 397 dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~ 476 (689)
T 1yiq_A 397 NPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI 476 (689)
T ss_dssp ETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS
T ss_pred CCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC
Confidence 8887744443211 37799999999999998887665
Q ss_pred eEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885 685 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVS 723 (725)
Q Consensus 685 V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH 723 (725)
+..-.+...++.+++++.|+.|++||.+||+.+.+++..
T Consensus 477 ~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 477 FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 555566777889999999999999999999999988744
No 226
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.62 E-value=1.6e-06 Score=92.51 Aligned_cols=164 Identities=10% Similarity=0.050 Sum_probs=111.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCeEEEEeccC------CCCeEEEEEcCCCCEEE-EEe---C
Q 004885 553 ASTSKVESCHFSPDGKLLATGGH-----DKKAVLWCTESFTVKSTLEEH------TQWITDVRFSPSLSRLA-TSS---A 617 (725)
Q Consensus 553 ~H~~~V~~i~fSpdg~~LaSgs~-----Dg~V~IWdl~~~~~i~~l~~H------~~~V~~IafsPd~~~La-sgs---~ 617 (725)
.|-..+.+++|+++++++++-.. ++.|.+||+.+++.+..+... ...+..|++++++..++ +.. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 45677999999999886665433 578999999998877666432 24568999998655554 444 5
Q ss_pred CCeEEEEECCCCCeeeEEEecC-----------------------------CCCeEEEEEccCCCeEEEEEeCCCcEEEE
Q 004885 618 DRTVRVWDTENPDYSLRTFTGH-----------------------------STTVMSLDFHPSKEDLLCSCDNNSEIRYW 668 (725)
Q Consensus 618 DgtIrvWDl~~~~~~l~~~~~h-----------------------------~~~V~sl~fsP~g~~llaSgs~Dg~I~Iw 668 (725)
++.|.+||+.++. ..+.+.+| ...+..|+|+|+++.++++......|+.+
T Consensus 144 ~~~i~v~d~~~g~-~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~ 222 (343)
T 2qe8_A 144 KAALIRVDLQTGL-AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRI 222 (343)
T ss_dssp GCEEEEEETTTCC-EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEE
T ss_pred CCeEEEEECCCCC-EEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEE
Confidence 7899999998765 34444322 12368899999998666555544456666
Q ss_pred ECC---CCe--------eEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEE
Q 004885 669 SIN---NGS--------CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR 717 (725)
Q Consensus 669 Dl~---t~~--------~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v 717 (725)
+.. .+. .+..+........++++++|..+++...++.|.+||.++++..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~ 282 (343)
T 2qe8_A 223 KSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYK 282 (343)
T ss_dssp EHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEE
T ss_pred EHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEE
Confidence 532 111 0112222345678999999887777777899999999667643
No 227
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.62 E-value=1.4e-06 Score=92.96 Aligned_cols=153 Identities=10% Similarity=0.077 Sum_probs=107.6
Q ss_pred CCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeEEEEe-------ccCCCCeEEEEEcCCCCEEEEEeC-----CCeE
Q 004885 556 SKVESCHFSPDGKLLATGGH--DKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPSLSRLATSSA-----DRTV 621 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~--Dg~V~IWdl~~~~~i~~l-------~~H~~~V~~IafsPd~~~Lasgs~-----DgtI 621 (725)
..+..|+++++|+++++... ++.++||.+.+++. ..+ ..|...+.+|+|+++++++++-.. +..|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 67899999999998888642 34355565545543 222 234568999999999876555433 5789
Q ss_pred EEEECCCCCeeeEEEec------CCCCeEEEEEccCCCeEEEEEe---CCCcEEEEECCCCeeEEEEec-----------
Q 004885 622 RVWDTENPDYSLRTFTG------HSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNGSCAGVFKC----------- 681 (725)
Q Consensus 622 rvWDl~~~~~~l~~~~~------h~~~V~sl~fsP~g~~llaSgs---~Dg~I~IwDl~t~~~v~~~~~----------- 681 (725)
.+||+.++. .+..+.. +...+..+++++++..++++.. .++.|.+||+.+++..+.+..
T Consensus 96 ~~~d~~tg~-~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 96 VAWDTLNNQ-LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEETTTTE-EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred EEEECCCCe-EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence 999999876 4454432 2235689999987666777766 678999999998876654421
Q ss_pred -------------------CCCeEEEEEecCCCEEEEEEcCC-eEEEEE
Q 004885 682 -------------------QSGATQMRFQPRLGRILAAAIEN-YISILD 710 (725)
Q Consensus 682 -------------------~~~V~sv~fspdg~~Lla~s~Dg-~V~IwD 710 (725)
...+..|+|+|+++.|+++..++ .|..++
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~ 223 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK 223 (343)
T ss_dssp EETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred eECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence 02368899999999888887765 565555
No 228
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.60 E-value=3.4e-06 Score=99.01 Aligned_cols=165 Identities=10% Similarity=0.030 Sum_probs=121.4
Q ss_pred eEEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCeEEEEecc--CC-------CCeEEEEEcCCC
Q 004885 558 VESCHFSPDGKLLATGGHDK-------------------KAVLWCTESFTVKSTLEE--HT-------QWITDVRFSPSL 609 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg-------------------~V~IWdl~~~~~i~~l~~--H~-------~~V~~IafsPd~ 609 (725)
...+++++++.+|+.+..++ +|..+|.++++.+..+.. |. .....+....++
T Consensus 245 w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG 324 (677)
T 1kb0_A 245 WDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAG 324 (677)
T ss_dssp CSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETT
T ss_pred ccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCC
Confidence 34678899888888887664 599999999999887753 21 122233333466
Q ss_pred ---CEEEEEeCCCeEEEEECCCCCeeeEEEecCC-----------CCe------------------------EEEEEccC
Q 004885 610 ---SRLATSSADRTVRVWDTENPDYSLRTFTGHS-----------TTV------------------------MSLDFHPS 651 (725)
Q Consensus 610 ---~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~-----------~~V------------------------~sl~fsP~ 651 (725)
..|++++.+|.|.++|..+++ .+..+.... ..+ ..++|+|+
T Consensus 325 ~~~~~l~~~~~~G~l~~lD~~tG~-~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~ 403 (677)
T 1kb0_A 325 KPRKVILHAPKNGFFFVLDRTNGK-FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQ 403 (677)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCC-EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETT
T ss_pred cEeeEEEEECCCCEEEEEECCCCC-EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCC
Confidence 678999999999999999988 443332110 001 14688998
Q ss_pred CCeEEEEEeC------------------------------------------CCcEEEEECCCCeeEEEEecCCCeEEEE
Q 004885 652 KEDLLCSCDN------------------------------------------NSEIRYWSINNGSCAGVFKCQSGATQMR 689 (725)
Q Consensus 652 g~~llaSgs~------------------------------------------Dg~I~IwDl~t~~~v~~~~~~~~V~sv~ 689 (725)
+..+++.... .+.|..||+.+++.+..++....+....
T Consensus 404 ~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~ 483 (677)
T 1kb0_A 404 TGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGT 483 (677)
T ss_dssp TTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCE
T ss_pred CCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcc
Confidence 8755543321 2789999999999999888766666666
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885 690 FQPRLGRILAAAIENYISILDVETQVCRLKLQVS 723 (725)
Q Consensus 690 fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH 723 (725)
+..+++.+++++.|+.|++||+++|+++.++.-.
T Consensus 484 ~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 517 (677)
T 1kb0_A 484 LTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG 517 (677)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred eEeCCCEEEEECCCCcEEEEECCCCceeeeeeCC
Confidence 7778889999988999999999999999998743
No 229
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.58 E-value=1.3e-06 Score=99.68 Aligned_cols=165 Identities=11% Similarity=0.076 Sum_probs=124.9
Q ss_pred CCeEEEEE-c-CCCCEEEEEe------------------CCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEE
Q 004885 556 SKVESCHF-S-PDGKLLATGG------------------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615 (725)
Q Consensus 556 ~~V~~i~f-S-pdg~~LaSgs------------------~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasg 615 (725)
..+..+++ + |+++++++++ +++.|.++|.++.+.+..+.--. ....++++|++++++++
T Consensus 134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt 212 (595)
T 1fwx_A 134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFST 212 (595)
T ss_dssp CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEE
T ss_pred CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEE
Confidence 45788888 5 8999998885 34689999999998888776322 45678899999999988
Q ss_pred eCCC--------------------------------------eEEEEECCC--CCeeeEEEecCCCCeEEEEEccCCCeE
Q 004885 616 SADR--------------------------------------TVRVWDTEN--PDYSLRTFTGHSTTVMSLDFHPSKEDL 655 (725)
Q Consensus 616 s~Dg--------------------------------------tIrvWDl~~--~~~~l~~~~~h~~~V~sl~fsP~g~~l 655 (725)
+.+. .|.|.|..+ +...+..+.. .....++.++|||+++
T Consensus 213 ~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v 291 (595)
T 1fwx_A 213 SYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHL 291 (595)
T ss_dssp ESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEE
T ss_pred ecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEE
Confidence 8653 467777776 3311333332 2346789999999999
Q ss_pred EEEEeCCCcEEEEECCCCe------------eEEEEecCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCC---------
Q 004885 656 LCSCDNNSEIRYWSINNGS------------CAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVET--------- 713 (725)
Q Consensus 656 laSgs~Dg~I~IwDl~t~~------------~v~~~~~~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~t--------- 713 (725)
++++-.+.+|.++|+.+.+ .+.......+...++|+|+| ++++... |+.|.+||+.+
T Consensus 292 ~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~ 370 (595)
T 1fwx_A 292 CVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEK 370 (595)
T ss_dssp EEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCS
T ss_pred EEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccc
Confidence 9888889999999999653 44555557789999999998 6665554 89999999987
Q ss_pred -CeEEEEEeCC
Q 004885 714 -QVCRLKLQVS 723 (725)
Q Consensus 714 -g~~v~~l~GH 723 (725)
.+.+.++.-|
T Consensus 371 ~~~vi~kidV~ 381 (595)
T 1fwx_A 371 VDPIKDKLDVH 381 (595)
T ss_dssp CCCEEEEEECS
T ss_pred cceeEEEeecc
Confidence 6788887765
No 230
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.52 E-value=9.9e-06 Score=84.03 Aligned_cols=170 Identities=8% Similarity=0.049 Sum_probs=119.1
Q ss_pred ceeeeEEEecCCCC--CeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeEEEEeccCC-CCeEEEEEcCCCCEEEEEe-
Q 004885 543 FTFTEFQLIPASTS--KVESCHFSPDGKLLATGGH--DKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSS- 616 (725)
Q Consensus 543 ~~~~~~~~l~~H~~--~V~~i~fSpdg~~LaSgs~--Dg~V~IWdl~~~~~i~~l~~H~-~~V~~IafsPd~~~Lasgs- 616 (725)
.+++.+.++. |.. ....+.|++++.++++.+. ++.|+++|+.+++.+..+.-.. .....++++ +..|+.+.
T Consensus 7 ~~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~ 83 (266)
T 2iwa_A 7 YIVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVW 83 (266)
T ss_dssp EEEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEET
T ss_pred cCceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEe
Confidence 3455666663 443 3579999998755555443 5799999999999888764222 223355555 45665555
Q ss_pred CCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC------CCeEEEEE
Q 004885 617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------SGATQMRF 690 (725)
Q Consensus 617 ~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~------~~V~sv~f 690 (725)
.++.+.++|..+.+ .+..+..-... ...+++++..++++. .++.|+++|..+.+.+..+... ..++.+.|
T Consensus 84 ~~~~v~viD~~t~~-v~~~i~~g~~~--g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~ 159 (266)
T 2iwa_A 84 LKNIGFIYDRRTLS-NIKNFTHQMKD--GWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEY 159 (266)
T ss_dssp TCSEEEEEETTTTE-EEEEEECCSSS--CCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred cCCEEEEEECCCCc-EEEEEECCCCC--eEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEE
Confidence 57899999999877 56666422111 233556788777654 6889999999999988888752 13678888
Q ss_pred ecCCCEEEEEEc-CCeEEEEECCCCeEEEEEe
Q 004885 691 QPRLGRILAAAI-ENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 691 spdg~~Lla~s~-Dg~V~IwDl~tg~~v~~l~ 721 (725)
. ++ .+++... ++.|.+.|..+++++..+.
T Consensus 160 ~-dg-~lyvn~~~~~~V~vID~~tg~V~~~I~ 189 (266)
T 2iwa_A 160 I-NG-EVWANIWQTDCIARISAKDGTLLGWIL 189 (266)
T ss_dssp E-TT-EEEEEETTSSEEEEEETTTCCEEEEEE
T ss_pred E-CC-EEEEecCCCCeEEEEECCCCcEEEEEE
Confidence 8 54 5666654 7899999999999999886
No 231
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.51 E-value=8.3e-06 Score=90.24 Aligned_cols=144 Identities=13% Similarity=0.158 Sum_probs=104.9
Q ss_pred eEEEEEcCCCCEEEEEe-------------------CCCcEEEEECCCCeEEEEeccC--CCCeEEEEE--cCCCCEEEE
Q 004885 558 VESCHFSPDGKLLATGG-------------------HDKKAVLWCTESFTVKSTLEEH--TQWITDVRF--SPSLSRLAT 614 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs-------------------~Dg~V~IWdl~~~~~i~~l~~H--~~~V~~Iaf--sPd~~~Las 614 (725)
-+.+.|+|+++.+++.. .+.+|.+||+.+++.+.++..- ......|+| +|+++++++
T Consensus 190 ~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV 269 (462)
T 2ece_A 190 AYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFI 269 (462)
T ss_dssp CCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEE
T ss_pred cceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEE
Confidence 45688999999888874 4689999999998888777542 133456666 999998877
Q ss_pred Ee------CCCeEEEEECCCCCeee-EEE--ec----------------CCCCeEEEEEccCCCeEEEEEeCCCcEEEEE
Q 004885 615 SS------ADRTVRVWDTENPDYSL-RTF--TG----------------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669 (725)
Q Consensus 615 gs------~DgtIrvWDl~~~~~~l-~~~--~~----------------h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwD 669 (725)
++ .+++|.+|..+.+.... ..+ .. ....+..|.++|+|+.+++++-..+.|.+||
T Consensus 270 ~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~Vavfd 349 (462)
T 2ece_A 270 NMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYD 349 (462)
T ss_dssp EEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEE
T ss_pred EEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 76 56688877765432111 111 10 0245788999999999999988899999999
Q ss_pred CCC---CeeEEEEecCC---------------CeEEEEEecCCCEEEEEE
Q 004885 670 INN---GSCAGVFKCQS---------------GATQMRFQPRLGRILAAA 701 (725)
Q Consensus 670 l~t---~~~v~~~~~~~---------------~V~sv~fspdg~~Lla~s 701 (725)
+.. .+.+..+...+ ....+.++|||++|+++.
T Consensus 350 V~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 350 ISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred ecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 863 35555555431 368899999999999998
No 232
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.49 E-value=3.2e-05 Score=80.22 Aligned_cols=148 Identities=7% Similarity=0.031 Sum_probs=107.5
Q ss_pred EEEEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEec
Q 004885 560 SCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 638 (725)
Q Consensus 560 ~i~fSpdg~~La-Sgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~ 638 (725)
.+++. ++.|+ +.-.++.|.++|..+.+.+.++..-.. ..+.+++|+.+|+++..+++|.++|..+.+ .+..+.-
T Consensus 70 Gi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~-v~~~I~V 144 (266)
T 2iwa_A 70 GLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFK-LIKKHNV 144 (266)
T ss_dssp EEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCC-EEEEEEC
T ss_pred EEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCc-EEEEEEE
Confidence 45554 44454 444578999999999999988853211 123355678878887788999999999877 4444431
Q ss_pred C-----CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC--------------CCeEEEEEecCCCEEEE
Q 004885 639 H-----STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--------------SGATQMRFQPRLGRILA 699 (725)
Q Consensus 639 h-----~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~--------------~~V~sv~fspdg~~Lla 699 (725)
. -..++.+.|. ++ .+++....++.|.+.|..+++.+..+... .....|+|+|+++.+++
T Consensus 145 g~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfV 222 (266)
T 2iwa_A 145 KYNGHRVIRLNELEYI-NG-EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFV 222 (266)
T ss_dssp EETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEE
T ss_pred CCCCcccccceeEEEE-CC-EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEE
Confidence 1 1246788888 65 57777767889999999999999988752 24689999999987777
Q ss_pred EEc-CCeEEEEECCCC
Q 004885 700 AAI-ENYISILDVETQ 714 (725)
Q Consensus 700 ~s~-Dg~V~IwDl~tg 714 (725)
++. .+.|.+.++...
T Consensus 223 Tgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 223 TGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EETTCSEEEEEEEEEC
T ss_pred ECCCCCeEEEEEEecc
Confidence 665 688888887643
No 233
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.43 E-value=1e-05 Score=83.36 Aligned_cols=170 Identities=14% Similarity=0.142 Sum_probs=118.1
Q ss_pred ceeeeEEEecCCCCC--eEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe-C
Q 004885 543 FTFTEFQLIPASTSK--VESCHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-A 617 (725)
Q Consensus 543 ~~~~~~~~l~~H~~~--V~~i~fSpdg~~LaSgs~Dg--~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs-~ 617 (725)
..++.+.++ .|... ...+.|+ ++.++.+.+.+| .|+++|+.+++.+..+.-.. .+....+.++++.|+... .
T Consensus 29 ~~~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~ 105 (262)
T 3nol_A 29 YDYQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWK 105 (262)
T ss_dssp EEEEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESS
T ss_pred cceEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEee
Confidence 344556666 44433 4788998 677777777766 99999999999888775432 333322333455666655 4
Q ss_pred CCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC------CCeEEEEEe
Q 004885 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------SGATQMRFQ 691 (725)
Q Consensus 618 DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~------~~V~sv~fs 691 (725)
++.+.+||..+.+ .+.++..... -+.++ +++..++++- .++.|.++|..+.+.+..+... ..++.+.|.
T Consensus 106 ~~~v~v~D~~t~~-~~~ti~~~~e-G~glt--~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~ 180 (262)
T 3nol_A 106 NGLGFVWNIRNLR-QVRSFNYDGE-GWGLT--HNDQYLIMSD-GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV 180 (262)
T ss_dssp SSEEEEEETTTCC-EEEEEECSSC-CCCEE--ECSSCEEECC-SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE
T ss_pred CCEEEEEECccCc-EEEEEECCCC-ceEEe--cCCCEEEEEC-CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE
Confidence 8899999999988 6777764322 23344 5667666554 4778999999999998887751 234567876
Q ss_pred cCCCEEEEEEc-CCeEEEEECCCCeEEEEEeC
Q 004885 692 PRLGRILAAAI-ENYISILDVETQVCRLKLQV 722 (725)
Q Consensus 692 pdg~~Lla~s~-Dg~V~IwDl~tg~~v~~l~G 722 (725)
+| .|++... ++.|.+.|.++|+++..+.-
T Consensus 181 -~G-~lyan~w~~~~I~vIDp~tG~V~~~Id~ 210 (262)
T 3nol_A 181 -DG-EIFANVWQTNKIVRIDPETGKVTGIIDL 210 (262)
T ss_dssp -TT-EEEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred -CC-EEEEEEccCCeEEEEECCCCcEEEEEEC
Confidence 54 5666664 78999999999999998864
No 234
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.39 E-value=6.5e-05 Score=76.65 Aligned_cols=160 Identities=8% Similarity=-0.030 Sum_probs=109.6
Q ss_pred CeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCeeeE
Q 004885 557 KVESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLR 634 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSg-s~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs-~DgtIrvWDl~~~~~~l~ 634 (725)
.+.+++|++++..|+.+ ..++.|.+++.+.......+.........|++++++..|+.+. ..+.|.+++++... ...
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~ 115 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRV 115 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEE
Confidence 37899999976655544 4578999999976654444433335688999999766665554 56799999997543 222
Q ss_pred EEecCCCCeEEEEEccCCCeEEEEEeC--CCcEEEEECCCCeeEEEEe-c-CCCeEEEEEecCCCEEEEEEc-CCeEEEE
Q 004885 635 TFTGHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFK-C-QSGATQMRFQPRLGRILAAAI-ENYISIL 709 (725)
Q Consensus 635 ~~~~h~~~V~sl~fsP~g~~llaSgs~--Dg~I~IwDl~t~~~v~~~~-~-~~~V~sv~fspdg~~Lla~s~-Dg~V~Iw 709 (725)
...........++++|++..++++... .+.|..++++... ...+. . -.....++|++++++|+++.. .+.|.++
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~ 194 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL 194 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEE
Confidence 222222467899999987767766544 4689889887433 33332 2 345889999998888777765 5899999
Q ss_pred ECCCCeEEE
Q 004885 710 DVETQVCRL 718 (725)
Q Consensus 710 Dl~tg~~v~ 718 (725)
|+.......
T Consensus 195 ~~~g~~~~~ 203 (267)
T 1npe_A 195 NPAQPGRRK 203 (267)
T ss_dssp ETTEEEEEE
T ss_pred ecCCCceEE
Confidence 998654433
No 235
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.37 E-value=5.6e-06 Score=91.69 Aligned_cols=146 Identities=10% Similarity=0.024 Sum_probs=104.5
Q ss_pred CCCCEEEEEeCC-----CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEECCCC
Q 004885 565 PDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTENP 629 (725)
Q Consensus 565 pdg~~LaSgs~D-----g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs----------~DgtIrvWDl~~~ 629 (725)
+++++++++... +.|.++|..+.+.+..+..-..+ .|+++||+++|+++. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 467766666543 69999999999999888754555 899999999988876 3678999999998
Q ss_pred CeeeEEEecC-------CCCeEEEEEccCCCeEEEEEeC-CCcEEEEECCCCeeEEEEecCCCeEEEEEecCC-CEEEEE
Q 004885 630 DYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAA 700 (725)
Q Consensus 630 ~~~l~~~~~h-------~~~V~sl~fsP~g~~llaSgs~-Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg-~~Lla~ 700 (725)
+ .+..+.-- ......+.|+|+|++++++... ++.|.++|+.+++.+..+...+. ....|++ ..+++.
T Consensus 160 ~-vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 160 L-PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMN 235 (426)
T ss_dssp C-EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEE
T ss_pred c-EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEE
Confidence 7 55555321 1234678999999988776543 67899999999999988875332 2233332 344555
Q ss_pred EcCCeEEEEECCCCeE
Q 004885 701 AIENYISILDVETQVC 716 (725)
Q Consensus 701 s~Dg~V~IwDl~tg~~ 716 (725)
+.||.+.+.++.+++.
T Consensus 236 ~~dG~~~~V~~~~~~v 251 (426)
T 3c75_H 236 CRDGSLARVDFADGET 251 (426)
T ss_dssp ETTSSEEEEECCTTCC
T ss_pred cCCCCEEEEECCCCcE
Confidence 5666666666655543
No 236
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.36 E-value=0.00011 Score=77.27 Aligned_cols=160 Identities=8% Similarity=-0.002 Sum_probs=104.3
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEecc-----CCCCeEEEEEcC-CCCEEEEEeC------------
Q 004885 557 KVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSP-SLSRLATSSA------------ 617 (725)
Q Consensus 557 ~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~-----H~~~V~~IafsP-d~~~Lasgs~------------ 617 (725)
.+.++++.+ +++ |+++...+.|.++|..++.. ..+.. ......++++.+ ++.++++...
T Consensus 81 ~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~ 158 (322)
T 2fp8_A 81 RTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM 158 (322)
T ss_dssp CEEEEEEETTTTE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred CCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceeh
Confidence 478899997 554 55555556688888765432 22211 123578899999 8887666432
Q ss_pred -----CCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe--eEEEE-ecCCCeEEEE
Q 004885 618 -----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVF-KCQSGATQMR 689 (725)
Q Consensus 618 -----DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~--~v~~~-~~~~~V~sv~ 689 (725)
++.|..||..++. +..+.........|+|+|+++.++++-..++.|.+|++.... ....+ ...+ ...|+
T Consensus 159 ~~~~~~g~v~~~d~~~~~--~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~ 235 (322)
T 2fp8_A 159 DTSDKTGRLIKYDPSTKE--TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIK 235 (322)
T ss_dssp HHTCCCEEEEEEETTTTE--EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEE
T ss_pred cccCCCceEEEEeCCCCE--EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeE
Confidence 3678888887654 222222223456799999998777776777899999987521 11122 2223 88899
Q ss_pred EecCCCEEEEEEc----------CCeEEEEECCCCeEEEEEeC
Q 004885 690 FQPRLGRILAAAI----------ENYISILDVETQVCRLKLQV 722 (725)
Q Consensus 690 fspdg~~Lla~s~----------Dg~V~IwDl~tg~~v~~l~G 722 (725)
++++|..+++... .+.|.++|.. ++.+..+..
T Consensus 236 ~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~ 277 (322)
T 2fp8_A 236 RNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPL 277 (322)
T ss_dssp ECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEEC
T ss_pred ECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEEC
Confidence 9999886666544 4678888874 777776653
No 237
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.35 E-value=9.7e-06 Score=83.66 Aligned_cols=152 Identities=14% Similarity=0.091 Sum_probs=109.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCe--EEEEEcCCCCEEEE-EeCCCeEEEEECCCCCeeeE
Q 004885 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI--TDVRFSPSLSRLAT-SSADRTVRVWDTENPDYSLR 634 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V--~~IafsPd~~~Las-gs~DgtIrvWDl~~~~~~l~ 634 (725)
...+.|+ ++.++++.+.+|.|+++|+++++.+..+ -. ... ..+++. ++.|+. .-.++.+.+||..+.+ .+.
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~-~~~ 130 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQ-RER 130 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTE-EEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCc-EEE
Confidence 4688887 4667778888899999999999887776 22 223 335554 344444 4458899999999987 677
Q ss_pred EEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC------CCeEEEEEecCCCEEEEEEc-CCeEE
Q 004885 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------SGATQMRFQPRLGRILAAAI-ENYIS 707 (725)
Q Consensus 635 ~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~------~~V~sv~fspdg~~Lla~s~-Dg~V~ 707 (725)
++..... -+.++ +++..++++ +.++.|+++|..+.+.+..+... ..++.+.|. +| .|++... ++.|.
T Consensus 131 ti~~~~e-GwGLt--~Dg~~L~vS-dGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanvw~s~~I~ 204 (268)
T 3nok_A 131 TTRYSGE-GWGLC--YWNGKLVRS-DGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG-VIYANIWHSSDVL 204 (268)
T ss_dssp EEECSSC-CCCEE--EETTEEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTCSEEE
T ss_pred EEeCCCc-eeEEe--cCCCEEEEE-CCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC-EEEEEECCCCeEE
Confidence 7764322 24444 456766655 45889999999999998888751 245677877 54 5666664 78999
Q ss_pred EEECCCCeEEEEEe
Q 004885 708 ILDVETQVCRLKLQ 721 (725)
Q Consensus 708 IwDl~tg~~v~~l~ 721 (725)
+.|.++|+++..+.
T Consensus 205 vIDp~TG~V~~~Id 218 (268)
T 3nok_A 205 EIDPATGTVVGVID 218 (268)
T ss_dssp EECTTTCBEEEEEE
T ss_pred EEeCCCCcEEEEEE
Confidence 99999999999886
No 238
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.33 E-value=4e-05 Score=78.23 Aligned_cols=168 Identities=14% Similarity=0.125 Sum_probs=116.5
Q ss_pred ceeeeEEEecCCCCC--eEEEEEcCCCCEEEEEeCC--CcEEEEECCCCeEEEEeccCCCC-eEEEEEcCCCCEEEEEe-
Q 004885 543 FTFTEFQLIPASTSK--VESCHFSPDGKLLATGGHD--KKAVLWCTESFTVKSTLEEHTQW-ITDVRFSPSLSRLATSS- 616 (725)
Q Consensus 543 ~~~~~~~~l~~H~~~--V~~i~fSpdg~~LaSgs~D--g~V~IWdl~~~~~i~~l~~H~~~-V~~IafsPd~~~Lasgs- 616 (725)
..++.+..+ .|... .-.+.|+. +.++.+.+.+ ..|+++|+.+++.+..+.-.... -..+++. +..|+...
T Consensus 7 ~~~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw 82 (243)
T 3mbr_X 7 QGYRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTW 82 (243)
T ss_dssp CCEEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEES
T ss_pred cceEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEe
Confidence 344556666 45443 55899985 5566666665 48999999999998877533221 1234443 45555544
Q ss_pred CCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC------CCeEEEEE
Q 004885 617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------SGATQMRF 690 (725)
Q Consensus 617 ~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~------~~V~sv~f 690 (725)
.++.+.+||..+.+ .+.++..... -+.|+ +++..++++- .++.|+++|..+.+.+..+... ..++.+.|
T Consensus 83 ~~~~v~v~D~~tl~-~~~ti~~~~~-Gwglt--~dg~~L~vSd-gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~ 157 (243)
T 3mbr_X 83 RNHEGFVYDLATLT-PRARFRYPGE-GWALT--SDDSHLYMSD-GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW 157 (243)
T ss_dssp SSSEEEEEETTTTE-EEEEEECSSC-CCEEE--ECSSCEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred eCCEEEEEECCcCc-EEEEEeCCCC-ceEEe--eCCCEEEEEC-CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE
Confidence 58899999999987 6777764332 24444 5666677654 5789999999999998888752 34667777
Q ss_pred ecCCCEEEEEE-cCCeEEEEECCCCeEEEEEe
Q 004885 691 QPRLGRILAAA-IENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 691 spdg~~Lla~s-~Dg~V~IwDl~tg~~v~~l~ 721 (725)
. + +.|++.. .++.|.+.|.++|+++..+.
T Consensus 158 ~-~-G~lyanvw~s~~I~vIDp~tG~V~~~id 187 (243)
T 3mbr_X 158 V-N-GELLANVWLTSRIARIDPASGKVVAWID 187 (243)
T ss_dssp E-T-TEEEEEETTTTEEEEECTTTCBEEEEEE
T ss_pred e-C-CEEEEEECCCCeEEEEECCCCCEEEEEE
Confidence 6 4 4566665 47899999999999999886
No 239
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.29 E-value=2.6e-05 Score=81.17 Aligned_cols=156 Identities=10% Similarity=0.035 Sum_probs=108.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004885 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l 633 (725)
+...+.++.+.+++. |..++.++.|..||.. ++.+..+......+.++.+.+++.+++. + +.|..|| .++. .+
T Consensus 135 ~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~-~~ 207 (330)
T 3hxj_A 135 KKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFG-S--DKVYAIN-PDGT-EK 207 (330)
T ss_dssp SSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEE-S--SSEEEEC-TTSC-EE
T ss_pred CCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEE-e--CEEEEEC-CCCc-EE
Confidence 344566777777776 5567778999999998 7777777655667778888777775544 4 7899999 5555 44
Q ss_pred EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-CCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVE 712 (725)
Q Consensus 634 ~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~-~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~ 712 (725)
..+......+.++.++++|. ++ .++.++.|..+|. ++..+..+... ..+.++.+.++ +.|++++.++.|..||.
T Consensus 208 ~~~~~~~~~~~~~~~~~~g~-l~-v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~-g~l~v~t~~ggl~~~d~- 282 (330)
T 3hxj_A 208 WNFYAGYWTVTRPAISEDGT-IY-VTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNT-DTIYFGSYDGHLYAINP- 282 (330)
T ss_dssp EEECCSSCCCSCCEECTTSC-EE-EEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTT-SCEEEECTTCEEEEECT-
T ss_pred EEEccCCcceeceEECCCCe-EE-EEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCC-CeEEEecCCCCEEEECC-
Confidence 45544456688888888876 44 4555778888884 56666666543 33445666655 56777888889999996
Q ss_pred CCeEEEEEe
Q 004885 713 TQVCRLKLQ 721 (725)
Q Consensus 713 tg~~v~~l~ 721 (725)
+++.+..+.
T Consensus 283 ~g~~~~~~~ 291 (330)
T 3hxj_A 283 DGTEKWNFE 291 (330)
T ss_dssp TSCEEEEEE
T ss_pred CCcEEEEEE
Confidence 677766654
No 240
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.27 E-value=9.3e-05 Score=76.24 Aligned_cols=131 Identities=11% Similarity=0.151 Sum_probs=95.5
Q ss_pred CCCEEEEE-eCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecC--C--
Q 004885 566 DGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH--S-- 640 (725)
Q Consensus 566 dg~~LaSg-s~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h--~-- 640 (725)
+++.|... -.++.+.+||..+.+.+.++..-. ....+++++..|+.+..+.+|.++|..+.. .+..+.-. .
T Consensus 95 ~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~-v~~~I~V~~~g~~ 170 (262)
T 3nol_A 95 WKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLT-PVRTITVTAHGEE 170 (262)
T ss_dssp ETTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCS-EEEEEECEETTEE
T ss_pred eCCEEEEEEeeCCEEEEEECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCe-EEEEEEeccCCcc
Confidence 45555544 458899999999999998886422 223344567778777778889999999877 45544321 1
Q ss_pred -CCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-------------CCeEEEEEecCCCEEEEEEc
Q 004885 641 -TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-------------SGATQMRFQPRLGRILAAAI 702 (725)
Q Consensus 641 -~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~-------------~~V~sv~fspdg~~Lla~s~ 702 (725)
..++.+.|. +| .+++..-.+..|.+.|..+++.+..+... ...+.|+|+|+++.|++++.
T Consensus 171 ~~~lNELe~~-~G-~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 171 LPELNELEWV-DG-EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp CCCEEEEEEE-TT-EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred ccccceeEEE-CC-EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 345567776 55 47777767889999999999999988752 23588999999888888776
No 241
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.23 E-value=1.1e-05 Score=87.73 Aligned_cols=89 Identities=3% Similarity=-0.032 Sum_probs=70.8
Q ss_pred EEEcCCCCEEEEEeC---------CCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEe-CCCcEEEEECCC
Q 004885 603 VRFSPSLSRLATSSA---------DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINN 672 (725)
Q Consensus 603 IafsPd~~~Lasgs~---------DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs-~Dg~I~IwDl~t 672 (725)
++|+|++++++++.. +..+.++|+.+.+ .+..+.... ....|+|+|+|+.+++++. .++.|.++|+.+
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~-vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t 346 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ-TSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC-EEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe-EEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence 678999888887543 2356699999987 455554332 5889999999998888888 699999999999
Q ss_pred CeeEEEEecCCCeEEEEEecC
Q 004885 673 GSCAGVFKCQSGATQMRFQPR 693 (725)
Q Consensus 673 ~~~v~~~~~~~~V~sv~fspd 693 (725)
++.+..+........+++.+.
T Consensus 347 ~kvv~~I~vg~~P~~i~~~~~ 367 (368)
T 1mda_H 347 DQDQSSVELDKGPESLSVQNE 367 (368)
T ss_dssp CEEEEECCCCSCCCEEECCCC
T ss_pred CcEEEEEECCCCCCEEEeecC
Confidence 999999987777778877653
No 242
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.20 E-value=0.00013 Score=78.16 Aligned_cols=147 Identities=11% Similarity=0.030 Sum_probs=94.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCe--
Q 004885 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-- 643 (725)
Q Consensus 566 dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V-- 643 (725)
++..|++++.++.|+.+|..+++.+..+...........+. +..+++++.++.|..+|..+++ .+-.+.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~-~~W~~~~~~~~~~~ 178 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGA-VKWTVNLDMPSLSL 178 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCC-EEEEEECCC-----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCc-EEEEEeCCCCceee
Confidence 45678888899999999999999887775443222222222 4578888899999999999887 344333221110
Q ss_pred ---EEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCC-----------e-EEEEEecCCCEEEEEEcCCeEEE
Q 004885 644 ---MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-----------A-TQMRFQPRLGRILAAAIENYISI 708 (725)
Q Consensus 644 ---~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~-----------V-~sv~fspdg~~Lla~s~Dg~V~I 708 (725)
...... + . .++.+..++.|..+|..+++.+..+..... + ....+ .++.+++++.++.|..
T Consensus 179 ~~~~~~~~~-~-~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~ 253 (376)
T 3q7m_A 179 RGESAPTTA-F-G-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTA 253 (376)
T ss_dssp CCCCCCEEE-T-T-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEE
T ss_pred cCCCCcEEE-C-C-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEE
Confidence 122222 2 3 345677789999999999998877764211 1 11111 2356677777778888
Q ss_pred EECCCCeEEEEE
Q 004885 709 LDVETQVCRLKL 720 (725)
Q Consensus 709 wDl~tg~~v~~l 720 (725)
+|.++|+.+...
T Consensus 254 ~d~~tG~~~w~~ 265 (376)
T 3q7m_A 254 LDLRSGQIMWKR 265 (376)
T ss_dssp EETTTCCEEEEE
T ss_pred EECCCCcEEeec
Confidence 888887766544
No 243
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.19 E-value=7.2e-05 Score=87.93 Aligned_cols=148 Identities=9% Similarity=0.067 Sum_probs=102.7
Q ss_pred CCCcEEEEECCCCeEEEEeccCC-------------------------------CCeEEEEEcCCCCEEEEEeCCCe---
Q 004885 575 HDKKAVLWCTESFTVKSTLEEHT-------------------------------QWITDVRFSPSLSRLATSSADRT--- 620 (725)
Q Consensus 575 ~Dg~V~IWdl~~~~~i~~l~~H~-------------------------------~~V~~IafsPd~~~Lasgs~Dgt--- 620 (725)
.|+.|+.||.++++.+..+.... .....++++|+..+|+.+..++.
T Consensus 181 ~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~ 260 (689)
T 1yiq_A 181 VRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWD 260 (689)
T ss_dssp CBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred CCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccc
Confidence 37899999999999988764210 11125788998889999887764
Q ss_pred ----------------EEEEECCCCCeeeEEEec--CC-------CCeEEEEEccCCC--eEEEEEeCCCcEEEEECCCC
Q 004885 621 ----------------VRVWDTENPDYSLRTFTG--HS-------TTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNG 673 (725)
Q Consensus 621 ----------------IrvWDl~~~~~~l~~~~~--h~-------~~V~sl~fsP~g~--~llaSgs~Dg~I~IwDl~t~ 673 (725)
|..||.++++ .+-.+.. |. ..+.......+|. .+++.++.+|.|+++|.++|
T Consensus 261 ~~~~~~~~gd~~y~~~v~AlD~~TG~-~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG 339 (689)
T 1yiq_A 261 PKWRSQAKGDNLFLSSIVAVNADTGE-YVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATG 339 (689)
T ss_dssp HHHHHTTCSCCTTTTEEEEEETTTCC-EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred cCCCCCCCCCceeeeeEEEEEccCCc-eeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCC
Confidence 9999999998 4444432 21 1222223223443 36778889999999999999
Q ss_pred eeEEEEecCC----------------------------------------CeEEEEEecCCCEEEEEEc-----------
Q 004885 674 SCAGVFKCQS----------------------------------------GATQMRFQPRLGRILAAAI----------- 702 (725)
Q Consensus 674 ~~v~~~~~~~----------------------------------------~V~sv~fspdg~~Lla~s~----------- 702 (725)
+.+...+... ....++|+|+.+.+++...
T Consensus 340 ~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~ 419 (689)
T 1yiq_A 340 ELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPE 419 (689)
T ss_dssp CEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSS
T ss_pred CEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccc
Confidence 9885443211 0123788998888777532
Q ss_pred ----------------------------------CCeEEEEECCCCeEEEEEeCC
Q 004885 703 ----------------------------------ENYISILDVETQVCRLKLQVS 723 (725)
Q Consensus 703 ----------------------------------Dg~V~IwDl~tg~~v~~l~GH 723 (725)
++.|..||+.||+.+-+++.+
T Consensus 420 ~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~ 474 (689)
T 1yiq_A 420 APKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV 474 (689)
T ss_dssp CCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES
T ss_pred cccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC
Confidence 377999999999998887654
No 244
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.19 E-value=3.3e-05 Score=90.46 Aligned_cols=165 Identities=10% Similarity=0.054 Sum_probs=117.0
Q ss_pred eEEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCeEEEEecc--CC-------CCeEEEEEcCCC
Q 004885 558 VESCHFSPDGKLLATGGHDK-------------------KAVLWCTESFTVKSTLEE--HT-------QWITDVRFSPSL 609 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg-------------------~V~IWdl~~~~~i~~l~~--H~-------~~V~~IafsPd~ 609 (725)
...+++.++..+++.++.++ .|..+|.++++.+..+.. |. .++....+..++
T Consensus 232 w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G 311 (668)
T 1kv9_A 232 WDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDG 311 (668)
T ss_dssp CSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred ccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCC
Confidence 34578888888888887766 399999999999888754 22 223333333355
Q ss_pred C---EEEEEeCCCeEEEEECCCCCeeeEEEecCC------------CC------------------------eEEEEEcc
Q 004885 610 S---RLATSSADRTVRVWDTENPDYSLRTFTGHS------------TT------------------------VMSLDFHP 650 (725)
Q Consensus 610 ~---~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~------------~~------------------------V~sl~fsP 650 (725)
+ .|+.++.+|.+.++|..+++ .+..+.... .+ -..++|+|
T Consensus 312 ~~~~~v~~~~~~G~l~~lD~~tG~-~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp 390 (668)
T 1kv9_A 312 KPRKVLMQAPKNGFFYVLDRTNGK-LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP 390 (668)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCC-EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEET
T ss_pred cEEEEEEEECCCCEEEEEECCCCC-EeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECC
Confidence 4 68889999999999999988 342221110 00 01267788
Q ss_pred CCCeEEEEE-----------------------------------eCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCC
Q 004885 651 SKEDLLCSC-----------------------------------DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG 695 (725)
Q Consensus 651 ~g~~llaSg-----------------------------------s~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~ 695 (725)
+...+++.. ..+|.|..||+.+++.+..++....+....+...++
T Consensus 391 ~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg 470 (668)
T 1kv9_A 391 GTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGN 470 (668)
T ss_dssp TTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTT
T ss_pred CCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCC
Confidence 766555421 123789999999999998887655555555566778
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885 696 RILAAAIENYISILDVETQVCRLKLQVS 723 (725)
Q Consensus 696 ~Lla~s~Dg~V~IwDl~tg~~v~~l~GH 723 (725)
.+++++.|+.|++||.++|+.+.+++..
T Consensus 471 ~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 471 LVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred EEEEECCcccchhhhhhcChhheEecCC
Confidence 9999989999999999999999888643
No 245
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.15 E-value=6e-05 Score=88.41 Aligned_cols=145 Identities=11% Similarity=0.094 Sum_probs=104.1
Q ss_pred CCcEEEEECCCCeEEEEeccCCCC--------------------------------eEEEEEcCCCCEEEEEeCCC----
Q 004885 576 DKKAVLWCTESFTVKSTLEEHTQW--------------------------------ITDVRFSPSLSRLATSSADR---- 619 (725)
Q Consensus 576 Dg~V~IWdl~~~~~i~~l~~H~~~--------------------------------V~~IafsPd~~~Lasgs~Dg---- 619 (725)
++.|+.||..+++.+..+...... ...++++|++.+|+.+..++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~ 268 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS 268 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence 799999999999998877532211 13578899888998887664
Q ss_pred ---------------eEEEEECCCCCeeeEEEec--CC-------CCeEEEEEccCCC--eEEEEEeCCCcEEEEECCCC
Q 004885 620 ---------------TVRVWDTENPDYSLRTFTG--HS-------TTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNG 673 (725)
Q Consensus 620 ---------------tIrvWDl~~~~~~l~~~~~--h~-------~~V~sl~fsP~g~--~llaSgs~Dg~I~IwDl~t~ 673 (725)
+|..+|.++++ .+-.+.. |. .....+....+|+ .+++.++.+|.|+++|.++|
T Consensus 269 ~~~~~~~~gd~~~~~sv~AlD~~TG~-~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 269 HKVRSPKGGDNLYLASIVALDPDTGK-YKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCC-EEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred CCCCCccCCCCeeeEEEEEEECCCCC-EEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 59999999988 3433332 21 1223334444663 47778899999999999999
Q ss_pred eeEEEEecCC-----------C-------------------------eEEEEEecCCCEEEEEEcC--------------
Q 004885 674 SCAGVFKCQS-----------G-------------------------ATQMRFQPRLGRILAAAIE-------------- 703 (725)
Q Consensus 674 ~~v~~~~~~~-----------~-------------------------V~sv~fspdg~~Lla~s~D-------------- 703 (725)
+.+..++... . ...++|+|+++.+++...+
T Consensus 348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g 427 (677)
T 1kb0_A 348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFN 427 (677)
T ss_dssp CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTT
T ss_pred CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccc
Confidence 9987776311 0 0257889998888776432
Q ss_pred -----------------------------CeEEEEECCCCeEEEEEe
Q 004885 704 -----------------------------NYISILDVETQVCRLKLQ 721 (725)
Q Consensus 704 -----------------------------g~V~IwDl~tg~~v~~l~ 721 (725)
+.|..||+.+++.+-+++
T Consensus 428 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~ 474 (677)
T 1kb0_A 428 QAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE 474 (677)
T ss_dssp CCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE
T ss_pred cccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC
Confidence 789999999999887775
No 246
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.11 E-value=0.0025 Score=67.13 Aligned_cols=162 Identities=9% Similarity=-0.025 Sum_probs=108.6
Q ss_pred CCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC--CeEEEEECCCCCee
Q 004885 556 SKVESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYS 632 (725)
Q Consensus 556 ~~V~~i~fSpdg~~L-aSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D--gtIrvWDl~~~~~~ 632 (725)
.....+++.+.+..| ++-...+.|.+++.+.......+.........|+++|.+.+|+.+... +.|..++++...
T Consensus 77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-- 154 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-- 154 (316)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--
T ss_pred CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC--
Confidence 346789998755544 555667899999987654433343334567899999976766666543 688888886543
Q ss_pred eEEE-ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeEEEEEecCCCEEEEEE-cCCeEE
Q 004885 633 LRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAA-IENYIS 707 (725)
Q Consensus 633 l~~~-~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~---~~~V~sv~fspdg~~Lla~s-~Dg~V~ 707 (725)
...+ ...-.....|+|++++..++++-...+.|..+|+........... -.....|++.. +.|+.+. ..+.|.
T Consensus 155 ~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~--~~ly~~d~~~~~V~ 232 (316)
T 1ijq_A 155 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIF 232 (316)
T ss_dssp EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEE
T ss_pred eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEEC--CEEEEEECCCCeEE
Confidence 2322 223456789999998887887777778999999985333222222 23467888853 4555554 468899
Q ss_pred EEECCCCeEEEEEe
Q 004885 708 ILDVETQVCRLKLQ 721 (725)
Q Consensus 708 IwDl~tg~~v~~l~ 721 (725)
.+|..+|+.+..+.
T Consensus 233 ~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 233 SANRLTGSDVNLLA 246 (316)
T ss_dssp EEETTTCCCCEEEE
T ss_pred EEeCCCCcceEEEe
Confidence 99988887665554
No 247
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.08 E-value=0.00018 Score=74.26 Aligned_cols=171 Identities=9% Similarity=0.051 Sum_probs=114.8
Q ss_pred CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004885 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (725)
Q Consensus 506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~ 585 (725)
+.+.++.+.++.|++++...+. ....+ +... .....+++.. +++.++.-.++.+.+||..
T Consensus 65 ~~Ly~stG~~g~v~~iD~~Tgk----------------v~~~~--l~~~-~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~ 124 (268)
T 3nok_A 65 GHFFESTGHQGTLRQLSLESAQ----------------PVWME--RLGN-IFAEGLASDG-ERLYQLTWTEGLLFTWSGM 124 (268)
T ss_dssp TEEEEEETTTTEEEECCSSCSS----------------CSEEE--ECTT-CCEEEEEECS-SCEEEEESSSCEEEEEETT
T ss_pred CEEEEEcCCCCEEEEEECCCCc----------------EEeEE--CCCC-cceeEEEEeC-CEEEEEEccCCEEEEEECC
Confidence 3567777788888888544332 11111 2221 1112355532 3444445568899999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEec--CC---CCeEEEEEccCCCeEEEEEe
Q 004885 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG--HS---TTVMSLDFHPSKEDLLCSCD 660 (725)
Q Consensus 586 ~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~--h~---~~V~sl~fsP~g~~llaSgs 660 (725)
+.+.+.++..-.. -..++ +++..|+.+..+++|.++|..+.+ .+..+.- +. ..++.+.|. +| .+++..-
T Consensus 125 Tl~~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~-v~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanvw 198 (268)
T 3nok_A 125 PPQRERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFA-LVGAVQVKLRGQPVELINELECA-NG-VIYANIW 198 (268)
T ss_dssp TTEEEEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCC-EEEEEECEETTEECCCEEEEEEE-TT-EEEEEET
T ss_pred cCcEEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCe-EEEEEEeCCCCcccccccccEEe-CC-EEEEEEC
Confidence 9999988874322 23343 567888888889999999999877 4554432 11 245677877 55 4777766
Q ss_pred CCCcEEEEECCCCeeEEEEecC--------------CCeEEEEEecCCCEEEEEEc
Q 004885 661 NNSEIRYWSINNGSCAGVFKCQ--------------SGATQMRFQPRLGRILAAAI 702 (725)
Q Consensus 661 ~Dg~I~IwDl~t~~~v~~~~~~--------------~~V~sv~fspdg~~Lla~s~ 702 (725)
.+..|.+.|..+++.+..+... .-.+.|+|+|+++.|++++.
T Consensus 199 ~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 199 HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 6789999999999999888742 24688999998887777765
No 248
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.08 E-value=3.6e-05 Score=87.82 Aligned_cols=147 Identities=12% Similarity=0.104 Sum_probs=110.5
Q ss_pred CCCEEEEEeC-CCcEEEEECCCCeEEEEecc-CCCCeEEEEE-c-CCCCEEEEEe------------------CCCeEEE
Q 004885 566 DGKLLATGGH-DKKAVLWCTESFTVKSTLEE-HTQWITDVRF-S-PSLSRLATSS------------------ADRTVRV 623 (725)
Q Consensus 566 dg~~LaSgs~-Dg~V~IWdl~~~~~i~~l~~-H~~~V~~Iaf-s-Pd~~~Lasgs------------------~DgtIrv 623 (725)
||++|+++.. +..|.+.|+++.++..++.- ....+..+++ + |++.++++++ .++.|.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 8888777665 55799999999998885542 2356888888 5 8999998884 2458999
Q ss_pred EECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC-------------------------------------CcEE
Q 004885 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-------------------------------------SEIR 666 (725)
Q Consensus 624 WDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D-------------------------------------g~I~ 666 (725)
+|.++.+ .+..+.--. ....++++|+|+++++++... +.|.
T Consensus 180 ID~~t~~-v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 180 VDADKWE-VAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EETTTTE-EEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EECCCCe-EEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 9999876 444443211 346678999999887777432 2488
Q ss_pred EEECCC--Cee-EEEEecCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCC
Q 004885 667 YWSINN--GSC-AGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQ 714 (725)
Q Consensus 667 IwDl~t--~~~-v~~~~~~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~tg 714 (725)
|.|.++ ++. +..+.......++.++|||+++++++. +++|.|+|+.+.
T Consensus 258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~ 309 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF 309 (595)
T ss_dssp EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence 888887 555 666666667889999999999888876 789999999864
No 249
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.08 E-value=0.00024 Score=74.63 Aligned_cols=153 Identities=9% Similarity=0.021 Sum_probs=105.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc--------------------CCCCeEEEEEcCCCCEEEEEe
Q 004885 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--------------------HTQWITDVRFSPSLSRLATSS 616 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~--------------------H~~~V~~IafsPd~~~Lasgs 616 (725)
...+++|++++++++++..++.|..||..++... .+.. ....+..|+++++...|+++.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 4567899999987888888999999998765433 2211 013578999998444566666
Q ss_pred CCCeEEEEECCCCCeeeEEEec-----CCCCeEEEEEcc-CCCeEEEEEeC-----------------CCcEEEEECCCC
Q 004885 617 ADRTVRVWDTENPDYSLRTFTG-----HSTTVMSLDFHP-SKEDLLCSCDN-----------------NSEIRYWSINNG 673 (725)
Q Consensus 617 ~DgtIrvWDl~~~~~~l~~~~~-----h~~~V~sl~fsP-~g~~llaSgs~-----------------Dg~I~IwDl~t~ 673 (725)
..+.|.++|..++. +..+.. .......+++.+ +|. ++++... ++.|..||..++
T Consensus 99 ~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 99 CYYHLSVVGSEGGH--ATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp TTTEEEEECTTCEE--CEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred CCCCEEEEeCCCCE--EEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 66668888877543 222221 113478899999 886 5555432 367999998877
Q ss_pred eeEEEEecCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCC
Q 004885 674 SCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVET 713 (725)
Q Consensus 674 ~~v~~~~~~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~t 713 (725)
........-.....|+|++++..|+++.. .+.|.+|++..
T Consensus 176 ~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 176 ETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp EEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred EEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 65544433345678999999987776644 68999999875
No 250
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.07 E-value=0.00013 Score=78.00 Aligned_cols=148 Identities=7% Similarity=0.005 Sum_probs=101.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccCC---------CCeE-EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEE
Q 004885 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT---------QWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (725)
Q Consensus 566 dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~---------~~V~-~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~ 635 (725)
++..|++++.++.|+.||..+++.+..+.... ..+. .+.. ++..+++++.++.|..+|..+++ .+-.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~-~~W~ 128 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGT-VAWQ 128 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCC-EEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCC-EEEE
Confidence 35678888889999999999999887765421 2222 2222 45688889999999999999988 3433
Q ss_pred EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCe------EEEEEecCCCEEEEEEcCCeEEEE
Q 004885 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA------TQMRFQPRLGRILAAAIENYISIL 709 (725)
Q Consensus 636 ~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V------~sv~fspdg~~Lla~s~Dg~V~Iw 709 (725)
+............. + . .++.++.++.|..+|.++++.+..+.....+ ...... ++.++++..++.|..+
T Consensus 129 ~~~~~~~~~~p~~~-~-~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~ 203 (376)
T 3q7m_A 129 TKVAGEALSRPVVS-D-G-LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAV 203 (376)
T ss_dssp EECSSCCCSCCEEE-T-T-EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEE
T ss_pred EeCCCceEcCCEEE-C-C-EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEE
Confidence 33322211122222 2 3 4556777899999999999999888754333 222333 3578888889999999
Q ss_pred ECCCCeEEEEEe
Q 004885 710 DVETQVCRLKLQ 721 (725)
Q Consensus 710 Dl~tg~~v~~l~ 721 (725)
|.++|+.+-.+.
T Consensus 204 d~~tG~~~w~~~ 215 (376)
T 3q7m_A 204 LMEQGQMIWQQR 215 (376)
T ss_dssp ETTTCCEEEEEE
T ss_pred ECCCCcEEEEEe
Confidence 999998887665
No 251
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.07 E-value=0.0001 Score=76.52 Aligned_cols=150 Identities=10% Similarity=-0.032 Sum_probs=102.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004885 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l 633 (725)
....+.++.+.+++.+++.+ +.|..|| .+++.+..+......+.++.+.+++. |+.++.++.|..+|. ++. .+
T Consensus 175 ~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~-~~ 247 (330)
T 3hxj_A 175 NDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGT-EK 247 (330)
T ss_dssp SSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSC-EE
T ss_pred CCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCC-Ee
Confidence 34557778887778755444 7899999 77777777766667788888888765 555667788888875 334 34
Q ss_pred EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVE 712 (725)
Q Consensus 634 ~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~ 712 (725)
..+......+.++.+.+++. ++ .++.++.|..+|. +++.+..+.. ...+.++...+++ .|++++.+|.|++...+
T Consensus 248 ~~~~~~~~~~~~~~~~~~g~-l~-v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g-~l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 248 WRFKTGKRIESSPVIGNTDT-IY-FGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENG-TIYFGTRNGKFYALFNL 323 (330)
T ss_dssp EEEECSSCCCSCCEECTTSC-EE-EECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTC-CEEEECTTSCEEEEEC-
T ss_pred EEeeCCCCccccceEcCCCe-EE-EecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCC-EEEEEcCCCeEEEEecc
Confidence 44544444445566666665 44 5666888999996 6777777665 4456777777774 57778899999998876
Q ss_pred CC
Q 004885 713 TQ 714 (725)
Q Consensus 713 tg 714 (725)
..
T Consensus 324 ~~ 325 (330)
T 3hxj_A 324 EH 325 (330)
T ss_dssp --
T ss_pred cc
Confidence 54
No 252
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.04 E-value=0.00074 Score=70.46 Aligned_cols=158 Identities=16% Similarity=0.139 Sum_probs=98.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-C-cEEEEECCCCeEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004885 556 SKVESCHFSPDGKLLATGGHD-K-KAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~D-g-~V~IWdl~~~~~i~~l~-~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~ 632 (725)
..+.++++.++++++++.... + .|..+|..+++...... ........+++.+++..+++...++.|.++|..++...
T Consensus 72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEe
Confidence 358899999999966655432 2 47777777766543322 12233455665555544444445888989998754211
Q ss_pred eEEEe---------cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC-Cee--EEEEecCCCeEEEEEecCCCEEEEE
Q 004885 633 LRTFT---------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSC--AGVFKCQSGATQMRFQPRLGRILAA 700 (725)
Q Consensus 633 l~~~~---------~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t-~~~--v~~~~~~~~V~sv~fspdg~~Lla~ 700 (725)
+.... ........| +|+++.++++-...+.|.+||+.. +.. ...+........|+++++|..+++.
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~ 229 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGAT 229 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEEC
T ss_pred EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEe
Confidence 21111 111234555 788888888887888999999874 322 1222222456789999998766665
Q ss_pred EcCCeEEEEECCCCeE
Q 004885 701 AIENYISILDVETQVC 716 (725)
Q Consensus 701 s~Dg~V~IwDl~tg~~ 716 (725)
...+.|.+||.. |+.
T Consensus 230 ~~~~~V~~~~~~-G~~ 244 (306)
T 2p4o_A 230 HIYNSVVRIAPD-RST 244 (306)
T ss_dssp BTTCCEEEECTT-CCE
T ss_pred CCCCeEEEECCC-CCE
Confidence 567889999975 554
No 253
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.02 E-value=0.00039 Score=79.85 Aligned_cols=161 Identities=14% Similarity=0.104 Sum_probs=109.8
Q ss_pred EEEEcCCCCEEEEEeCC----------------CcEEEEECCCCeEEEEecc--CC--------CCeEEEEEcCCCC---
Q 004885 560 SCHFSPDGKLLATGGHD----------------KKAVLWCTESFTVKSTLEE--HT--------QWITDVRFSPSLS--- 610 (725)
Q Consensus 560 ~i~fSpdg~~LaSgs~D----------------g~V~IWdl~~~~~i~~l~~--H~--------~~V~~IafsPd~~--- 610 (725)
.+++.++...|+.+..+ +.|..+|.++++.+..+.. |. .++ -+....+++
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~ 317 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTP 317 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEE
Confidence 35666666666665532 3699999999999887753 21 222 122224663
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeEEEecCC-------------CCe--------------------------EEEEEccC
Q 004885 611 RLATSSADRTVRVWDTENPDYSLRTFTGHS-------------TTV--------------------------MSLDFHPS 651 (725)
Q Consensus 611 ~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~-------------~~V--------------------------~sl~fsP~ 651 (725)
.++.++.+|.+.++|..+++ .+..+.... .++ ..++|+|+
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~-~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~ 396 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGN-LIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPE 396 (571)
T ss_dssp EEEEECTTSEEEEEETTTCC-EEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred EEEEeCCCcEEEEEECCCCC-EEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCC
Confidence 57788889999999999987 343332110 011 23578888
Q ss_pred CCeEEEEEe------------------------------------CCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCC
Q 004885 652 KEDLLCSCD------------------------------------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG 695 (725)
Q Consensus 652 g~~llaSgs------------------------------------~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~ 695 (725)
...+++.+. .++.|..||+.+++.+..+.....+....+...++
T Consensus 397 ~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg 476 (571)
T 2ad6_A 397 SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGG 476 (571)
T ss_dssp TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTT
T ss_pred CCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCC
Confidence 775655432 35789999999999998887655444444444567
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885 696 RILAAAIENYISILDVETQVCRLKLQV 722 (725)
Q Consensus 696 ~Lla~s~Dg~V~IwDl~tg~~v~~l~G 722 (725)
.+++++.|+.|++||.++|+++.+++-
T Consensus 477 ~v~~g~~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 477 LVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence 888888999999999999999988873
No 254
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.01 E-value=0.0014 Score=71.11 Aligned_cols=162 Identities=6% Similarity=-0.077 Sum_probs=107.3
Q ss_pred CeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-C-CeEEEEECCCCCeee
Q 004885 557 KVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-D-RTVRVWDTENPDYSL 633 (725)
Q Consensus 557 ~V~~i~fSpdg~~-LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-D-gtIrvWDl~~~~~~l 633 (725)
....+++.+.+.. +++-...+.|.+++++.......+.........|+++|.+.+|+.... + +.|..++++... ..
T Consensus 160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~ 238 (386)
T 3v65_B 160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RR 238 (386)
T ss_dssp CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CE
T ss_pred CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC-cE
Confidence 4567888875554 455555678989888765444344444466889999997766666554 4 678888887544 22
Q ss_pred EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEE-cCCeEEEEEC
Q 004885 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAA-IENYISILDV 711 (725)
Q Consensus 634 ~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s-~Dg~V~IwDl 711 (725)
............|+|+|++..++++-...+.|..+|+........+.. ......|++. . +.|+.+. ..+.|..+|.
T Consensus 239 ~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~-~~ly~td~~~~~V~~~~~ 316 (386)
T 3v65_B 239 IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-E-DSLYWTDWHTKSINSANK 316 (386)
T ss_dssp EEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-T-TEEEEEETTTTEEEEEET
T ss_pred EEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-C-CEEEEeeCCCCeEEEEEC
Confidence 233333445789999998887887777778899999875443333332 3457788883 3 3555554 4688999997
Q ss_pred CCCeEEEEEe
Q 004885 712 ETQVCRLKLQ 721 (725)
Q Consensus 712 ~tg~~v~~l~ 721 (725)
.+|+.+..+.
T Consensus 317 ~~G~~~~~i~ 326 (386)
T 3v65_B 317 FTGKNQEIIR 326 (386)
T ss_dssp TTCCSCEEEE
T ss_pred CCCcceEEEc
Confidence 7776555554
No 255
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.00 E-value=0.0013 Score=66.95 Aligned_cols=129 Identities=13% Similarity=0.166 Sum_probs=94.0
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCC-----CC
Q 004885 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-----TT 642 (725)
Q Consensus 568 ~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~-----~~ 642 (725)
++....-.++.+.+||..+.+.+.++..-... ..+ ++++..|+++..+++|.++|..+.. .+..+.-.. ..
T Consensus 76 ~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wgl--t~dg~~L~vSdgs~~l~~iDp~t~~-~~~~I~V~~~g~~~~~ 151 (243)
T 3mbr_X 76 RLIQLTWRNHEGFVYDLATLTPRARFRYPGEG-WAL--TSDDSHLYMSDGTAVIRKLDPDTLQ-QVGSIKVTAGGRPLDN 151 (243)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEEECSSCC-CEE--EECSSCEEEECSSSEEEEECTTTCC-EEEEEECEETTEECCC
T ss_pred EEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eEE--eeCCCEEEEECCCCeEEEEeCCCCe-EEEEEEEccCCccccc
Confidence 34444456889999999999999988743322 344 4567777777778999999999877 455544211 34
Q ss_pred eEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC--------------CCeEEEEEecCCCEEEEEEc
Q 004885 643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--------------SGATQMRFQPRLGRILAAAI 702 (725)
Q Consensus 643 V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~--------------~~V~sv~fspdg~~Lla~s~ 702 (725)
++.+.|. +|. +++..-.+..|.+.|.++++.+..+... .-.+.|+|+|+++.|++++.
T Consensus 152 lNeLe~~-~G~-lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 152 LNELEWV-NGE-LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEEEE-TTE-EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred ceeeEEe-CCE-EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 5677766 444 7766656779999999999999988731 23588999999888888775
No 256
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.99 E-value=0.0023 Score=68.53 Aligned_cols=162 Identities=7% Similarity=-0.042 Sum_probs=107.3
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-C-CeEEEEECCCCCee
Q 004885 556 SKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-D-RTVRVWDTENPDYS 632 (725)
Q Consensus 556 ~~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-D-gtIrvWDl~~~~~~ 632 (725)
.....+++.+.+. ++++-...+.|.+++++.......+...-.....|+++|.+..|+.... + +.|..++++...
T Consensus 116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-- 193 (349)
T 3v64_C 116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-- 193 (349)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--
T ss_pred CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC--
Confidence 3457889987555 4455556788999998765443344444456789999997666655543 4 788888887543
Q ss_pred eEEE-ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEc-CCeEEEE
Q 004885 633 LRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI-ENYISIL 709 (725)
Q Consensus 633 l~~~-~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~-Dg~V~Iw 709 (725)
...+ .........|+|+|++..++++-...+.|..+|+........+.. ......|++. . +.|+.+.. .+.|..+
T Consensus 194 ~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~-~~ly~td~~~~~V~~~ 271 (349)
T 3v64_C 194 RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-E-DSLYWTDWHTKSINSA 271 (349)
T ss_dssp CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-T-TEEEEEETTTTEEEEE
T ss_pred cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-C-CEEEEecCCCCeEEEE
Confidence 2232 223345789999998887887777778999999875433333322 3457788884 3 45555544 6889999
Q ss_pred ECCCCeEEEEEe
Q 004885 710 DVETQVCRLKLQ 721 (725)
Q Consensus 710 Dl~tg~~v~~l~ 721 (725)
|..+|+.+..+.
T Consensus 272 ~~~~G~~~~~i~ 283 (349)
T 3v64_C 272 NKFTGKNQEIIR 283 (349)
T ss_dssp ETTTCCSCEEEE
T ss_pred EccCCCccEEec
Confidence 977776555443
No 257
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.96 E-value=0.0026 Score=65.39 Aligned_cols=155 Identities=10% Similarity=0.118 Sum_probs=105.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE---EEEec------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTLE------EHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~---i~~l~------~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl 626 (725)
.....|++.+++.++++.-.++.+.++++..... +.... .....+..|+|+|.+..|+++.......||.+
T Consensus 70 ~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~ 149 (255)
T 3qqz_A 70 KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKV 149 (255)
T ss_dssp SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEE
T ss_pred CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEE
Confidence 4477888888887777766778999998865432 22221 12445789999999877777765544455544
Q ss_pred CC--CCeeeEEEe-------cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC----------CeEE
Q 004885 627 EN--PDYSLRTFT-------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS----------GATQ 687 (725)
Q Consensus 627 ~~--~~~~l~~~~-------~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~----------~V~s 687 (725)
+. ....+..+. .+...+.+|+|+|....+++.....+.|.++|.. ++.+..+.... ....
T Consensus 150 ~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEG 228 (255)
T 3qqz_A 150 NGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEG 228 (255)
T ss_dssp ESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEE
T ss_pred cccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCe
Confidence 31 110122221 1234578999999988899888888999999977 56766665422 4689
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECC
Q 004885 688 MRFQPRLGRILAAAIENYISILDVE 712 (725)
Q Consensus 688 v~fspdg~~Lla~s~Dg~V~IwDl~ 712 (725)
|+|.++|. |++++..+.+++|.-.
T Consensus 229 ia~d~~G~-lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 229 VAMDASGN-IYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp EEECTTCC-EEEEETTTEEEEEEC-
T ss_pred eEECCCCC-EEEEcCCceEEEEEec
Confidence 99999986 5556777878877654
No 258
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.91 E-value=0.0022 Score=68.72 Aligned_cols=158 Identities=9% Similarity=0.006 Sum_probs=109.4
Q ss_pred CCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCeee
Q 004885 556 SKVESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSL 633 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSg-s~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~L-asgs~DgtIrvWDl~~~~~~l 633 (725)
..+..++|++.+..|+.+ ...+.|+.++++.......+.........+++++.+..| ++-...+.|.+.+++... ..
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~ 151 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RK 151 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc-eE
Confidence 458899999866655544 467889999988765444444333456789999865555 454557899999998654 23
Q ss_pred EEEecCCCCeEEEEEccCCCeEEEEEeCC-CcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEc-CCeEEEEE
Q 004885 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI-ENYISILD 710 (725)
Q Consensus 634 ~~~~~h~~~V~sl~fsP~g~~llaSgs~D-g~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~-Dg~V~IwD 710 (725)
..+.........|+++|.+..++++-..+ +.|..++++.......+.. -.....|+|+|+++.|+.+.. .+.|..+|
T Consensus 152 ~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~ 231 (349)
T 3v64_C 152 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN 231 (349)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEe
Confidence 33333445678999999888788776666 7899999875333222222 345789999998888877765 57899999
Q ss_pred CCCC
Q 004885 711 VETQ 714 (725)
Q Consensus 711 l~tg 714 (725)
+...
T Consensus 232 ~dG~ 235 (349)
T 3v64_C 232 LDGS 235 (349)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 8754
No 259
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.90 E-value=0.0072 Score=65.97 Aligned_cols=165 Identities=9% Similarity=-0.036 Sum_probs=110.9
Q ss_pred CCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCC
Q 004885 554 STSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPD 630 (725)
Q Consensus 554 H~~~V~~i~fSpd-g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~--DgtIrvWDl~~~~ 630 (725)
.......+++.+. ++++++-...+.|.+.+++.......+.........|+++|.+.+|+.... .+.|...+++...
T Consensus 157 ~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~ 236 (400)
T 3p5b_L 157 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 236 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS
T ss_pred CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc
Confidence 3455788999874 445555556789999998766554444444456889999997666666653 3688888887544
Q ss_pred eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeEEEEEecCCCEEEEEEc-CCeE
Q 004885 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAI-ENYI 706 (725)
Q Consensus 631 ~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~---~~~V~sv~fspdg~~Lla~s~-Dg~V 706 (725)
....+...-.....|++++++..|+++-...+.|..+|++.......+.. -.....|++. ++.|+.+.. .+.|
T Consensus 237 -~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V 313 (400)
T 3p5b_L 237 -IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAI 313 (400)
T ss_dssp -CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSE
T ss_pred -cEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeE
Confidence 22333333356799999998887887766778899999975444333332 2346677774 345555544 5789
Q ss_pred EEEECCCCeEEEEEe
Q 004885 707 SILDVETQVCRLKLQ 721 (725)
Q Consensus 707 ~IwDl~tg~~v~~l~ 721 (725)
..+|..+|+.+..+.
T Consensus 314 ~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 314 FSANRLTGSDVNLLA 328 (400)
T ss_dssp EEEESSSCCCCEEEE
T ss_pred EEEEcCCCCceEEEe
Confidence 999988886555554
No 260
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.89 E-value=0.0041 Score=65.39 Aligned_cols=158 Identities=13% Similarity=0.008 Sum_probs=105.6
Q ss_pred CCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCC----CeEEEEeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEECCC
Q 004885 555 TSKVESCHFSPDGKLLATG-GHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTEN 628 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSg-s~Dg~V~IWdl~~----~~~i~~l~~H~~~V~~IafsPd~~~La-sgs~DgtIrvWDl~~ 628 (725)
...+..++|++++..|+.+ ..++.|..++++. ......+.........|++++.+..|+ +-..++.|.++|++.
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 3457899999866655544 4568999999876 222223332334568899987655554 445678999999975
Q ss_pred CCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC-CcEEEEECCCCeeEEEEe-c-CCCeEEEEEecCCCEEEEEEc-CC
Q 004885 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAGVFK-C-QSGATQMRFQPRLGRILAAAI-EN 704 (725)
Q Consensus 629 ~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D-g~I~IwDl~t~~~v~~~~-~-~~~V~sv~fspdg~~Lla~s~-Dg 704 (725)
.. ....+.........++++|.+..++++.... +.|..+++.. .....+. . -.....|+|+++++.|+.+.. .+
T Consensus 109 ~~-~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~ 186 (316)
T 1ijq_A 109 VK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 186 (316)
T ss_dssp SS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred Cc-eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEEEEECCCC
Confidence 44 2333333345678999999878777766544 7899998864 3333332 2 346789999998888887765 57
Q ss_pred eEEEEECCCC
Q 004885 705 YISILDVETQ 714 (725)
Q Consensus 705 ~V~IwDl~tg 714 (725)
.|.++|+...
T Consensus 187 ~I~~~d~dg~ 196 (316)
T 1ijq_A 187 SISSIDVNGG 196 (316)
T ss_dssp EEEEEETTSC
T ss_pred eEEEEecCCC
Confidence 8999999753
No 261
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.88 E-value=0.0037 Score=64.22 Aligned_cols=171 Identities=10% Similarity=0.056 Sum_probs=116.7
Q ss_pred EEecCCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004885 549 QLIPASTSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (725)
Q Consensus 549 ~~l~~H~~~V~~i~fSpdg~~-LaSgs~Dg~V~IWdl~~~~~i~~l~~-H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl 626 (725)
+.+.+-...+..++|+|+++. +++...++.|...|.. ++.+..+.- -......|++.+++.++++.-.++.+.++++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 566777778999999997664 4557778899999987 777777632 2356889999988877777667889999988
Q ss_pred CCCCe--eeEEEe------cCCCCeEEEEEccCCCeEEEEEeCCC-cEEEEECC-CCeeEEEEec--------CCCeEEE
Q 004885 627 ENPDY--SLRTFT------GHSTTVMSLDFHPSKEDLLCSCDNNS-EIRYWSIN-NGSCAGVFKC--------QSGATQM 688 (725)
Q Consensus 627 ~~~~~--~l~~~~------~h~~~V~sl~fsP~g~~llaSgs~Dg-~I~IwDl~-t~~~v~~~~~--------~~~V~sv 688 (725)
..... .+.... ........|+|+|.+..+++++-.+. .|+.|+-. ....+..+.. -..+.++
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 76552 122221 12344689999999987887766554 45556511 1112222211 2357899
Q ss_pred EEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEe
Q 004885 689 RFQPRLGRILAAAI-ENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 689 ~fspdg~~Lla~s~-Dg~V~IwDl~tg~~v~~l~ 721 (725)
+++|..+.|++.+. ...|.++|.. |+.+..+.
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~ 211 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMS 211 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEE
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEE
Confidence 99998887777766 5789999976 55555543
No 262
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.82 E-value=0.0019 Score=70.22 Aligned_cols=159 Identities=9% Similarity=0.016 Sum_probs=109.7
Q ss_pred CCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCCCee
Q 004885 555 TSKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYS 632 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~La-Sgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~La-sgs~DgtIrvWDl~~~~~~ 632 (725)
...+..++|++.+..|+ +-...+.|+.++++.......+.........|++++.+..|+ +-...+.|.+.+++... .
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-~ 193 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-R 193 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS-C
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-e
Confidence 34588999998655555 445678899999887655444443334567889998655554 44557789998887554 2
Q ss_pred eEEEecCCCCeEEEEEccCCCeEEEEEeCC-CcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEc-CCeEEEE
Q 004885 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI-ENYISIL 709 (725)
Q Consensus 633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~D-g~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~-Dg~V~Iw 709 (725)
...+.........|+++|.+..++++-..+ +.|..+++........... -.....|+|+|+++.|+.+.. .+.|..+
T Consensus 194 ~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~ 273 (386)
T 3v65_B 194 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA 273 (386)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEE
Confidence 333333345679999999888787776655 7899999875433333322 345789999988888877765 5789999
Q ss_pred ECCCC
Q 004885 710 DVETQ 714 (725)
Q Consensus 710 Dl~tg 714 (725)
|+...
T Consensus 274 d~dG~ 278 (386)
T 3v65_B 274 NLDGS 278 (386)
T ss_dssp CTTSC
T ss_pred eCCCC
Confidence 98754
No 263
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.82 E-value=0.0069 Score=64.00 Aligned_cols=163 Identities=8% Similarity=-0.038 Sum_probs=107.8
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCCee
Q 004885 556 SKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYS 632 (725)
Q Consensus 556 ~~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~--DgtIrvWDl~~~~~~ 632 (725)
.....+++.+.+. ++++-...+.|.+++++.......+.........|+++|.+.+|+.+.. .+.|...+++... .
T Consensus 79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~ 157 (318)
T 3sov_A 79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-R 157 (318)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-C
T ss_pred CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-e
Confidence 3466888887444 5555556789999998764433333344566789999997666666653 5788888887543 2
Q ss_pred eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeEEEEEecCCCEEEEEE-cCCeEEEEE
Q 004885 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAA-IENYISILD 710 (725)
Q Consensus 633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~-~~~~V~sv~fspdg~~Lla~s-~Dg~V~IwD 710 (725)
.......-.....|+|+|++..++++-...+.|..+|++.......+. .......+++.. ..++.+. ..+.|..+|
T Consensus 158 ~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~--~~lywtd~~~~~V~~~~ 235 (318)
T 3sov_A 158 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE--DILYWTDWSTHSILACN 235 (318)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET--TEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC--CEEEEEecCCCeEEEEE
Confidence 222222334578999999888788777777899999997543333333 234577888764 3444444 468899999
Q ss_pred CCCCeEEEEEe
Q 004885 711 VETQVCRLKLQ 721 (725)
Q Consensus 711 l~tg~~v~~l~ 721 (725)
..+|+.+..+.
T Consensus 236 ~~~G~~~~~i~ 246 (318)
T 3sov_A 236 KYTGEGLREIH 246 (318)
T ss_dssp TTTCCSCEEEE
T ss_pred CCCCCceEEEe
Confidence 98886555543
No 264
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.81 E-value=0.0016 Score=69.26 Aligned_cols=162 Identities=9% Similarity=0.132 Sum_probs=110.0
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEeccC-----C--CCeEEEEE---cCCCCEEEEEe--
Q 004885 550 LIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEH-----T--QWITDVRF---SPSLSRLATSS-- 616 (725)
Q Consensus 550 ~l~~H~~~V~~i~fSpdg~~LaSgs-~Dg~V~IWdl~~~~~i~~l~~H-----~--~~V~~Iaf---sPd~~~Lasgs-- 616 (725)
.++.....-.|++|.+....|..++ ..++|..||...+....+...+ . ..+..|.| .|+++++++..
T Consensus 7 ~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~ 86 (334)
T 2p9w_A 7 DVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA 86 (334)
T ss_dssp EECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred EecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence 3444455567899988555555555 7999999999765444332222 1 13689999 68877766544
Q ss_pred -----------CCCeEEEEECC---CCCeeeEEEe--c-----------CCCCeEEEEEccCCCeEEEEEeCC-CcEEEE
Q 004885 617 -----------ADRTVRVWDTE---NPDYSLRTFT--G-----------HSTTVMSLDFHPSKEDLLCSCDNN-SEIRYW 668 (725)
Q Consensus 617 -----------~DgtIrvWDl~---~~~~~l~~~~--~-----------h~~~V~sl~fsP~g~~llaSgs~D-g~I~Iw 668 (725)
.+..|..||+. +++ .+.... . -...+..++..++|+ .+++++.. +.|..+
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~-~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV 164 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSK-PVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARV 164 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCC-CSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEE
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCC-EEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEEE
Confidence 26789999998 665 232222 1 113488999999998 66677777 778777
Q ss_pred ECCCCeeEEEEec-------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885 669 SINNGSCAGVFKC-------QSGATQMRFQPRLGRILAAAIENYISILDVETQ 714 (725)
Q Consensus 669 Dl~t~~~v~~~~~-------~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg 714 (725)
+.... .+..+.. ....+.|+++|+|..|++...++.|..+|+.+.
T Consensus 165 ~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 165 SADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp CTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred eCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 77643 3333221 223679999999999998877999999998753
No 265
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.79 E-value=0.00072 Score=74.73 Aligned_cols=154 Identities=12% Similarity=0.152 Sum_probs=103.3
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-C----eEEEEECCCCC
Q 004885 557 KVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R----TVRVWDTENPD 630 (725)
Q Consensus 557 ~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D-g----tIrvWDl~~~~ 630 (725)
....++|+| ++..|+++...+.|+++|+.......... .......|+|++++++|+++... + .+.+++.....
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 457899998 45667666665889999998766544433 45668899999999977776642 1 34344433222
Q ss_pred eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEEc-CCeEE
Q 004885 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAI-ENYIS 707 (725)
Q Consensus 631 ~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s~-Dg~V~ 707 (725)
.....+.. ......++++|+...++++-..++.|+.||...+.....+.. ......|+|+|++.+|+++.. .+.|.
T Consensus 217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~ 295 (430)
T 3tc9_A 217 KVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL 295 (430)
T ss_dssp CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence 11122222 234677889995455777766788999999987765333332 345789999999997666654 68899
Q ss_pred EEECC
Q 004885 708 ILDVE 712 (725)
Q Consensus 708 IwDl~ 712 (725)
+++..
T Consensus 296 ~~~~d 300 (430)
T 3tc9_A 296 RSDYD 300 (430)
T ss_dssp EEEEE
T ss_pred EEeCC
Confidence 98765
No 266
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.79 E-value=0.00064 Score=79.53 Aligned_cols=153 Identities=13% Similarity=0.107 Sum_probs=100.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccCCC-CeEEEEEcC--CCCEEEEEeC------CCeEEEEECCCCCeeeEEEe
Q 004885 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSP--SLSRLATSSA------DRTVRVWDTENPDYSLRTFT 637 (725)
Q Consensus 567 g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~-~V~~IafsP--d~~~Lasgs~------DgtIrvWDl~~~~~~l~~~~ 637 (725)
+..|++++.|+.|+.+|..+++.+..+..... ....+...| .+..++++.. ++.|..||.++++ .+-.+.
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~-~~W~~~ 195 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGK-LAWRFY 195 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC-EEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCc-EEEEec
Confidence 56788888999999999999999887754210 001111112 1345555543 5899999999988 444332
Q ss_pred cC-------------------------------CCCeEEEEEccCCCeEEEEEeCCC-------------------cEEE
Q 004885 638 GH-------------------------------STTVMSLDFHPSKEDLLCSCDNNS-------------------EIRY 667 (725)
Q Consensus 638 ~h-------------------------------~~~V~sl~fsP~g~~llaSgs~Dg-------------------~I~I 667 (725)
.. ......++++|+.. +++.+..++ .|..
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~A 274 (668)
T 1kv9_A 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSILA 274 (668)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 11 01112468888877 444555554 4999
Q ss_pred EECCCCeeEEEEecC----------CCeEEEEEecCCC---EEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 668 WSINNGSCAGVFKCQ----------SGATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 668 wDl~t~~~v~~~~~~----------~~V~sv~fspdg~---~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
+|.++|+.+..+... ..+....+..+|+ .+++++.+|.|+++|.++|+.+..++
T Consensus 275 lD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~ 341 (668)
T 1kv9_A 275 IRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEK 341 (668)
T ss_dssp ECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred EcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccc
Confidence 999999999888752 1222333334654 57778889999999999999986554
No 267
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.78 E-value=0.0016 Score=74.97 Aligned_cols=161 Identities=12% Similarity=0.069 Sum_probs=108.6
Q ss_pred EEEEcCCCCEEEEEeC--------------------C----CcEEEEECCCCeEEEEecc--CC--------CCeEEEEE
Q 004885 560 SCHFSPDGKLLATGGH--------------------D----KKAVLWCTESFTVKSTLEE--HT--------QWITDVRF 605 (725)
Q Consensus 560 ~i~fSpdg~~LaSgs~--------------------D----g~V~IWdl~~~~~i~~l~~--H~--------~~V~~Iaf 605 (725)
.+++.|+..+|+.+.. | +.|..+|.++++.+..+.. |. .++ -+..
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~-l~~~ 328 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELV-LFDY 328 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCE-EEEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcE-EEee
Confidence 4677777777776653 2 5899999999999988743 32 122 1222
Q ss_pred c-CCCC---EEEEEeCCCeEEEEECCCCCeeeEEEecCC-------------CC--------------------------
Q 004885 606 S-PSLS---RLATSSADRTVRVWDTENPDYSLRTFTGHS-------------TT-------------------------- 642 (725)
Q Consensus 606 s-Pd~~---~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~-------------~~-------------------------- 642 (725)
. .+++ .|+.++.+|.+.++|.++++ .+..+.... .+
T Consensus 329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~-~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~ 407 (582)
T 1flg_A 329 KAKDGKIVKATAHADRNGFFYVVDRSNGK-LQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPP 407 (582)
T ss_dssp ECSSSCEEEEEEEECTTSEEEEEETTTCC-EEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSC
T ss_pred ecCCCCEEEEEEEECCCceEEEEECCCCC-EecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcC
Confidence 2 4564 68889999999999999987 343332211 00
Q ss_pred ------eEEEEEccCCCeEEEEEe--------------------------------CCCcEEEEECCCCeeEEEEecCCC
Q 004885 643 ------VMSLDFHPSKEDLLCSCD--------------------------------NNSEIRYWSINNGSCAGVFKCQSG 684 (725)
Q Consensus 643 ------V~sl~fsP~g~~llaSgs--------------------------------~Dg~I~IwDl~t~~~v~~~~~~~~ 684 (725)
-..++++|+...+++... .+|.|..||+.+++.+..++....
T Consensus 408 ~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~ 487 (582)
T 1flg_A 408 FLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP 487 (582)
T ss_dssp TTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC
T ss_pred CccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC
Confidence 013466776554444321 257899999999999888776444
Q ss_pred eEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885 685 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQV 722 (725)
Q Consensus 685 V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~G 722 (725)
+..-.....++.+++++.|+.|+.||.++|+.+-+++.
T Consensus 488 ~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 488 LWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp CCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 33322333467888899999999999999999988864
No 268
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.77 E-value=0.00026 Score=84.00 Aligned_cols=153 Identities=8% Similarity=0.053 Sum_probs=97.7
Q ss_pred CeEEEEEc-CCCCEEEEEeC-CC----cEEEEECCCC-eEEE-EeccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEE
Q 004885 557 KVESCHFS-PDGKLLATGGH-DK----KAVLWCTESF-TVKS-TLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRV 623 (725)
Q Consensus 557 ~V~~i~fS-pdg~~LaSgs~-Dg----~V~IWdl~~~-~~i~-~l~~H~~~V~~IafsPd~~~Lasgs~D-----gtIrv 623 (725)
.+...+|| |||++||.+.. +| .|+++|+.++ +.+. .+. .....++|+||++.|+....| ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57889999 99998875433 33 5999999988 6321 111 123468899999888776655 26888
Q ss_pred EECCCCCee-eEEEe-cCCCCeEEEEEccCCCeEEEEEeC--CCcEEEEECCCC--ee-EEEEe-c-CCCeEEEEEecCC
Q 004885 624 WDTENPDYS-LRTFT-GHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNG--SC-AGVFK-C-QSGATQMRFQPRL 694 (725)
Q Consensus 624 WDl~~~~~~-l~~~~-~h~~~V~sl~fsP~g~~llaSgs~--Dg~I~IwDl~t~--~~-v~~~~-~-~~~V~sv~fspdg 694 (725)
+++.++... ...+. ........+.|+|+|++++++... ...|+++|+.++ .. +..+. . .....++.|+. |
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g 330 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-T 330 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-T
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-C
Confidence 888776421 23332 233456789999999988776643 346888999875 23 12222 2 33455666554 5
Q ss_pred CEEEEEEc-C----CeEEEEECCC
Q 004885 695 GRILAAAI-E----NYISILDVET 713 (725)
Q Consensus 695 ~~Lla~s~-D----g~V~IwDl~t 713 (725)
+.|+..+. + ..|.++|+.+
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTS
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCC
Confidence 66555544 3 3677888775
No 269
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.77 E-value=0.0057 Score=66.79 Aligned_cols=161 Identities=12% Similarity=0.016 Sum_probs=109.3
Q ss_pred CCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCC----eEEEEeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEECC
Q 004885 554 STSKVESCHFSPDGKLLATG-GHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTE 627 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSg-s~Dg~V~IWdl~~~----~~i~~l~~H~~~V~~IafsPd~~~La-sgs~DgtIrvWDl~ 627 (725)
....+..++|++.+..|+.+ ...+.|+.+++... .....+.........|++++.+..|+ +-...+.|.+.+++
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 34568899999866655554 45678999998652 23333443455678999998545554 44557899999998
Q ss_pred CCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeC-CCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEc-CC
Q 004885 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI-EN 704 (725)
Q Consensus 628 ~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~-Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~-Dg 704 (725)
... ....+.........|+++|.+..++++-.. .+.|...++........+.. -.....|+|+++++.|+.+.. .+
T Consensus 190 g~~-~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~ 268 (400)
T 3p5b_L 190 GVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 268 (400)
T ss_dssp TCS-EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CCc-eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCC
Confidence 655 333333344568899999987777766533 37899999875443333332 356899999998888888765 57
Q ss_pred eEEEEECCCCe
Q 004885 705 YISILDVETQV 715 (725)
Q Consensus 705 ~V~IwDl~tg~ 715 (725)
.|..+|+....
T Consensus 269 ~I~~~d~dG~~ 279 (400)
T 3p5b_L 269 SISSIDVNGGN 279 (400)
T ss_dssp EEEEEETTSCC
T ss_pred EEEEEeCCCCc
Confidence 89999987543
No 270
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.72 E-value=0.0066 Score=63.16 Aligned_cols=161 Identities=11% Similarity=0.058 Sum_probs=102.0
Q ss_pred eeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-C-eEE
Q 004885 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R-TVR 622 (725)
Q Consensus 545 ~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D-g-tIr 622 (725)
.+.+..+... ....+++|+++++++++-..++.|..||.+.. ....+. ....+..|+++++++++++.... + .|.
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~ 98 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVV 98 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEE
Confidence 4455555433 56789999999997777768899999998753 333332 24568899999999866555432 2 466
Q ss_pred EEECCCCCeeeEEEe--cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee-EEEEe-------c---CCCeEEEE
Q 004885 623 VWDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK-------C---QSGATQMR 689 (725)
Q Consensus 623 vWDl~~~~~~l~~~~--~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~-v~~~~-------~---~~~V~sv~ 689 (725)
.+|..++. +..+. ........+++.+. ..++++...++.|+++|..++.. +.... . -.....|
T Consensus 99 ~~d~~~g~--~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi- 174 (306)
T 2p4o_A 99 SLVKSDGT--VETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL- 174 (306)
T ss_dssp EEECTTSC--EEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-
T ss_pred EEcCCCCe--EEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-
Confidence 67777665 22222 12233455565554 34565555688999999876532 21111 0 1234555
Q ss_pred EecCCCEEEEEEc-CCeEEEEECCC
Q 004885 690 FQPRLGRILAAAI-ENYISILDVET 713 (725)
Q Consensus 690 fspdg~~Lla~s~-Dg~V~IwDl~t 713 (725)
++++++|+++.. .+.|.+||+..
T Consensus 175 -s~dg~~lyv~d~~~~~I~~~~~~~ 198 (306)
T 2p4o_A 175 -KRFGNFLYVSNTEKMLLLRIPVDS 198 (306)
T ss_dssp -EEETTEEEEEETTTTEEEEEEBCT
T ss_pred -CcCCCEEEEEeCCCCEEEEEEeCC
Confidence 888888777765 68999999874
No 271
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.71 E-value=0.0016 Score=75.27 Aligned_cols=161 Identities=10% Similarity=0.061 Sum_probs=107.4
Q ss_pred EEEEcCCCCEEEEEeCC----------------CcEEEEECCCCeEEEEeccCC----------CCeEEEEEc-CCC---
Q 004885 560 SCHFSPDGKLLATGGHD----------------KKAVLWCTESFTVKSTLEEHT----------QWITDVRFS-PSL--- 609 (725)
Q Consensus 560 ~i~fSpdg~~LaSgs~D----------------g~V~IWdl~~~~~i~~l~~H~----------~~V~~Iafs-Pd~--- 609 (725)
.+++.++..+|+.+..+ +.|..+|.++++.+..+.... .++. +... .++
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~ 323 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKAR 323 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEE
Confidence 45666677777777654 389999999999988775322 1121 2232 466
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEEEecC------------C-CCe--------------------------EEEEEcc
Q 004885 610 SRLATSSADRTVRVWDTENPDYSLRTFTGH------------S-TTV--------------------------MSLDFHP 650 (725)
Q Consensus 610 ~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h------------~-~~V--------------------------~sl~fsP 650 (725)
..++.++.+|.+.++|.++++ .+..+... . .++ ..++|+|
T Consensus 324 ~~v~~~~~~G~l~~lD~~tG~-~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp 402 (599)
T 1w6s_A 324 KLLTHPDRNGIVYTLDRTDGA-LVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP 402 (599)
T ss_dssp EEEEEECTTSEEEEEETTTCC-EEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred EEEEEECCCcEEEEEECCCCC-EeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence 467778899999999999987 34333211 0 011 2356777
Q ss_pred CCCeEEEEE--------------------------------e------CCCcEEEEECCCCeeEEEEecCCCeEEEEEec
Q 004885 651 SKEDLLCSC--------------------------------D------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQP 692 (725)
Q Consensus 651 ~g~~llaSg--------------------------------s------~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fsp 692 (725)
+...+++.. + .+|.|..||+.+++.+...+...++..-.+..
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t 482 (599)
T 1w6s_A 403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMAT 482 (599)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEE
T ss_pred CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEe
Confidence 665443321 1 34789999999999988886543333222334
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885 693 RLGRILAAAIENYISILDVETQVCRLKLQV 722 (725)
Q Consensus 693 dg~~Lla~s~Dg~V~IwDl~tg~~v~~l~G 722 (725)
.++.+++++.|+.|+.||.++|+++-+++-
T Consensus 483 agg~vf~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence 567888899999999999999999988863
No 272
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.68 E-value=0.002 Score=68.99 Aligned_cols=152 Identities=14% Similarity=0.179 Sum_probs=107.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCC----CC---EEEEEeC---CCeEEEEECCCCCeeeEE
Q 004885 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS----LS---RLATSSA---DRTVRVWDTENPDYSLRT 635 (725)
Q Consensus 566 dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd----~~---~Lasgs~---DgtIrvWDl~~~~~~l~~ 635 (725)
...+++....++-+.|||+ +++.+..+.. +.++.|...|+ ++ ++++... +.+|++|++......+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 3445666667788999999 7888888764 66788887773 22 3333333 579999977422213444
Q ss_pred Eec------CC-CCeEEEEE--ccC-CCeEEEEEeCCCcEEEEECC-------CCeeEEEEecCCCeEEEEEecCCCEEE
Q 004885 636 FTG------HS-TTVMSLDF--HPS-KEDLLCSCDNNSEIRYWSIN-------NGSCAGVFKCQSGATQMRFQPRLGRIL 698 (725)
Q Consensus 636 ~~~------h~-~~V~sl~f--sP~-g~~llaSgs~Dg~I~IwDl~-------t~~~v~~~~~~~~V~sv~fspdg~~Ll 698 (725)
+.. .. ..+..+|+ +|. +..+++....+|.+..|++. +.+.+++|...+.+..|.+.+..++|+
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY 195 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence 421 11 45677887 775 44456677778999999882 346788888888899999999999999
Q ss_pred EEEcCCeEEEEECC-----CCeEEEEE
Q 004885 699 AAAIENYISILDVE-----TQVCRLKL 720 (725)
Q Consensus 699 a~s~Dg~V~IwDl~-----tg~~v~~l 720 (725)
++-.+..|..||.+ +++.+..+
T Consensus 196 v~eEd~GIw~~da~p~~~~~~~~v~~~ 222 (355)
T 3amr_A 196 IAEEDEAIWKFSAEPDGGSNGTVIDRA 222 (355)
T ss_dssp EEETTTEEEEEECSTTSCSCCEEEEEB
T ss_pred EecccceEEEEeCCcCCCCCceEEEEe
Confidence 99999878888866 45677655
No 273
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.58 E-value=0.029 Score=66.69 Aligned_cols=165 Identities=9% Similarity=-0.038 Sum_probs=112.0
Q ss_pred CCCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-C-CeEEEEECCCCC
Q 004885 554 STSKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-D-RTVRVWDTENPD 630 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~La-Sgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-D-gtIrvWDl~~~~ 630 (725)
.......|++.+.++.|+ +-...+.|.+.+++.......+.........|+++|...+|+.... + +.|.+.+++...
T Consensus 469 ~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~ 548 (791)
T 3m0c_C 469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 548 (791)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC
T ss_pred CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc
Confidence 445577899988765454 5556789999999765544444444556899999998667766654 2 678888887554
Q ss_pred eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeEEEEEecCCCEEEEEEc-CCeE
Q 004885 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAI-ENYI 706 (725)
Q Consensus 631 ~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~---~~~V~sv~fspdg~~Lla~s~-Dg~V 706 (725)
....+.........|++++.+..|+++-.....|..+|+........+.. -.....|++.. .+|+.+.. .+.|
T Consensus 549 -~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~--~~lYwtD~~~~~I 625 (791)
T 3m0c_C 549 -IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAI 625 (791)
T ss_dssp -EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET--TEEEEEETTTTEE
T ss_pred -eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC--CEEEEEECCCCEE
Confidence 33333333457899999988887877766677899999975544444432 12456677643 46666655 5889
Q ss_pred EEEECCCCeEEEEEe
Q 004885 707 SILDVETQVCRLKLQ 721 (725)
Q Consensus 707 ~IwDl~tg~~v~~l~ 721 (725)
...|..+|+.+..+.
T Consensus 626 ~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 626 FSANRLTGSDVNLLA 640 (791)
T ss_dssp EEEETTTCCCCEEEE
T ss_pred EEEeCCCCcceEEee
Confidence 999988886555553
No 274
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.56 E-value=0.012 Score=69.99 Aligned_cols=162 Identities=12% Similarity=0.013 Sum_probs=109.2
Q ss_pred CCCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCC----eEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECC
Q 004885 554 STSKVESCHFSPDGKLLA-TGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTE 627 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~La-Sgs~Dg~V~IWdl~~~----~~i~~l~~H~~~V~~IafsPd~~~Lasg-s~DgtIrvWDl~ 627 (725)
....+..|+|.+....|+ +-...+.|+.+++... .....+.........|++++.+..|+.+ ...+.|.+.+++
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 345678999998555544 5455678999988752 2233344345567789999877655554 457899999998
Q ss_pred CCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC-CcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEc-CC
Q 004885 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI-EN 704 (725)
Q Consensus 628 ~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D-g~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~-Dg 704 (725)
... ....+.........|+++|.+.+|+++-..+ +.|.+.++........+.. -.....|++++.++.|+.+.. .+
T Consensus 502 G~~-~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~ 580 (791)
T 3m0c_C 502 GVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 580 (791)
T ss_dssp SSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CCe-EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCC
Confidence 654 3333333445689999999877777665443 7899999975444333333 356899999988888887765 57
Q ss_pred eEEEEECCCCeE
Q 004885 705 YISILDVETQVC 716 (725)
Q Consensus 705 ~V~IwDl~tg~~ 716 (725)
.|.++|+.....
T Consensus 581 ~I~~~d~dG~~~ 592 (791)
T 3m0c_C 581 SISSIDVNGGNR 592 (791)
T ss_dssp EEEEEETTSCSC
T ss_pred cEEEEecCCCce
Confidence 899999875533
No 275
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.54 E-value=0.005 Score=68.04 Aligned_cols=166 Identities=11% Similarity=0.103 Sum_probs=96.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCC---Cc-EEEEECCCCeE-EEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECC
Q 004885 554 STSKVESCHFSPDGKLLATGGHD---KK-AVLWCTESFTV-KSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTE 627 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSgs~D---g~-V~IWdl~~~~~-i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~ 627 (725)
......+++|+++|+++++.... .. +..++...... ...+. .......++++| ++.++++-..++.|+.+|..
T Consensus 180 ~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~ 258 (433)
T 4hw6_A 180 NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA 258 (433)
T ss_dssp CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTT
T ss_pred CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC
Confidence 44568999999999944444311 12 33333322111 11222 234467789999 66665565567899999998
Q ss_pred CCCeeeEEEe-cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC--CCee--EEEEecC----------------CCeE
Q 004885 628 NPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--NGSC--AGVFKCQ----------------SGAT 686 (725)
Q Consensus 628 ~~~~~l~~~~-~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~--t~~~--v~~~~~~----------------~~V~ 686 (725)
++......+. +.......|+|+|+++.++++-...+.|+.+|+. ++.. ...+... ....
T Consensus 259 ~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~ 338 (433)
T 4hw6_A 259 TGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPN 338 (433)
T ss_dssp TCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEE
T ss_pred CCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCc
Confidence 7662122222 1222345799999998788777778899998875 3321 1122110 2356
Q ss_pred EEEE---------ecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885 687 QMRF---------QPRLGRILAAAIENYISILDVETQVCRLKLQV 722 (725)
Q Consensus 687 sv~f---------spdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~G 722 (725)
.++| .+++..+++-...+.|++++. +|. +.++.|
T Consensus 339 giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~-v~t~~G 381 (433)
T 4hw6_A 339 QGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR-VTTYAG 381 (433)
T ss_dssp EEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE-EEEEEC
T ss_pred cEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC-EEEEEe
Confidence 7898 565444444444678999985 564 444433
No 276
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.54 E-value=0.019 Score=68.02 Aligned_cols=154 Identities=12% Similarity=0.042 Sum_probs=107.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc--------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004885 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--------HTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~--------H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl 626 (725)
...|.++...++|++. .|+.++-|.+||..++........ ....|.++...+++..|..|+.++-|.+||.
T Consensus 356 ~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~ 434 (795)
T 4a2l_A 356 DNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHR 434 (795)
T ss_dssp CSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEET
T ss_pred CCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeC
Confidence 3569999998888744 466777799999877654433211 2357999999888885777788788999999
Q ss_pred CCCCeeeEEEec-----CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-------CCCeEEEEEecCC
Q 004885 627 ENPDYSLRTFTG-----HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRL 694 (725)
Q Consensus 627 ~~~~~~l~~~~~-----h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-------~~~V~sv~fspdg 694 (725)
.++. +..+.. ....|.++..+++|. +++.. . +.|.+||..+++....... ...|.++..+++|
T Consensus 435 ~~~~--~~~~~~~~~~l~~~~v~~i~~d~~g~-lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g 509 (795)
T 4a2l_A 435 NSGQ--VENFNQRNSQLVNENVYAILPDGEGN-LWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHK 509 (795)
T ss_dssp TTCC--EEEECTTTSCCSCSCEEEEEECSSSC-EEEEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTC
T ss_pred CCCc--EEEeecCCCCcCCCeeEEEEECCCCC-EEEEe-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCC
Confidence 8765 333321 245799999998887 44333 3 4588999988765433211 2568999999886
Q ss_pred CEEEEEEcCCeEEEEECCCCeE
Q 004885 695 GRILAAAIENYISILDVETQVC 716 (725)
Q Consensus 695 ~~Lla~s~Dg~V~IwDl~tg~~ 716 (725)
...+ ++. +.|.+||..++++
T Consensus 510 ~lWi-gt~-~Gl~~~~~~~~~~ 529 (795)
T 4a2l_A 510 RLWI-GGE-EGLSVFKQEGLDI 529 (795)
T ss_dssp CEEE-EES-SCEEEEEEETTEE
T ss_pred CEEE-EeC-CceEEEeCCCCeE
Confidence 6544 445 5688899877765
No 277
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.52 E-value=0.0069 Score=69.39 Aligned_cols=152 Identities=14% Similarity=0.068 Sum_probs=101.5
Q ss_pred CEEEEEeC------CCcEEEEECCCCeEEEEeccCCCC--------------------------------------eEEE
Q 004885 568 KLLATGGH------DKKAVLWCTESFTVKSTLEEHTQW--------------------------------------ITDV 603 (725)
Q Consensus 568 ~~LaSgs~------Dg~V~IWdl~~~~~i~~l~~H~~~--------------------------------------V~~I 603 (725)
..+++++. ++.|+.+|..+++.+..+...... ...+
T Consensus 161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~ 240 (571)
T 2ad6_A 161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY 240 (571)
T ss_dssp TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCC
T ss_pred CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeE
Confidence 34555544 799999999999998876532110 0235
Q ss_pred EEcCCCCEEEEEeCC----------------CeEEEEECCCCCeeeEEEec--CC--------CCeEEEEEccCCC--eE
Q 004885 604 RFSPSLSRLATSSAD----------------RTVRVWDTENPDYSLRTFTG--HS--------TTVMSLDFHPSKE--DL 655 (725)
Q Consensus 604 afsPd~~~Lasgs~D----------------gtIrvWDl~~~~~~l~~~~~--h~--------~~V~sl~fsP~g~--~l 655 (725)
+++++...++.+..+ +.|..+|.++++ .+-.+.. |. .++ -+....+|+ .+
T Consensus 241 a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~-~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~ 318 (571)
T 2ad6_A 241 AYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGM-AKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPL 318 (571)
T ss_dssp EEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCC-EEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEE
T ss_pred EEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCc-EEEEecCCCCcccccccCCCCE-EEecccCCcEEEE
Confidence 677766677766532 369999999988 3444331 21 222 123334664 46
Q ss_pred EEEEeCCCcEEEEECCCCeeEEEEecCCC--------------e--------------------------EEEEEecCCC
Q 004885 656 LCSCDNNSEIRYWSINNGSCAGVFKCQSG--------------A--------------------------TQMRFQPRLG 695 (725)
Q Consensus 656 laSgs~Dg~I~IwDl~t~~~v~~~~~~~~--------------V--------------------------~sv~fspdg~ 695 (725)
++.++.+|.|+++|..+|+.+..++.... + ..++|+|+.+
T Consensus 319 v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g 398 (571)
T 2ad6_A 319 LSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR 398 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT
T ss_pred EEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC
Confidence 67788899999999999999887764220 1 2467888878
Q ss_pred EEEEEEc-------------------------------------CCeEEEEECCCCeEEEEEe
Q 004885 696 RILAAAI-------------------------------------ENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 696 ~Lla~s~-------------------------------------Dg~V~IwDl~tg~~v~~l~ 721 (725)
.+++... ++.|..||+.+|+.+-+++
T Consensus 399 ~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~ 461 (571)
T 2ad6_A 399 TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKW 461 (571)
T ss_dssp EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEE
T ss_pred EEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEec
Confidence 7776642 4789999999999887764
No 278
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.50 E-value=0.023 Score=60.80 Aligned_cols=144 Identities=8% Similarity=0.105 Sum_probs=96.6
Q ss_pred CCcEEEEECC-CCeEEEEecc------CC-CCeEEEEE--cCC-CC-EEEEEeCCCeEEEEECCC---CC---eeeEEEe
Q 004885 576 DKKAVLWCTE-SFTVKSTLEE------HT-QWITDVRF--SPS-LS-RLATSSADRTVRVWDTEN---PD---YSLRTFT 637 (725)
Q Consensus 576 Dg~V~IWdl~-~~~~i~~l~~------H~-~~V~~Iaf--sPd-~~-~Lasgs~DgtIrvWDl~~---~~---~~l~~~~ 637 (725)
+.+|.+|+++ ....+..+.. .. ..++.+|+ +|. +. ++++...++.+..|++.. +. ..++.|.
T Consensus 98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~ 177 (355)
T 3amr_A 98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK 177 (355)
T ss_dssp CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence 5799999774 2223444421 11 56777787 774 44 688888899999999842 21 2455655
Q ss_pred cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC-----CCeeEEEEec---CCCeEEEEE--ecCCC-EEEEEEc-CCe
Q 004885 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-----NGSCAGVFKC---QSGATQMRF--QPRLG-RILAAAI-ENY 705 (725)
Q Consensus 638 ~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~-----t~~~v~~~~~---~~~V~sv~f--spdg~-~Lla~s~-Dg~ 705 (725)
- .+.+..|..++....++ .+..+..|..||.+ ++..+..+.. ...+..|++ .+++. +|++++. +++
T Consensus 178 l-gsq~EgcvvDd~~g~Ly-v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s 255 (355)
T 3amr_A 178 M-NSQTEGMAADDEYGRLY-IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSS 255 (355)
T ss_dssp C-SSCEEEEEEETTTTEEE-EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred C-CCCcceEEEcCCCCeEE-EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence 3 45788899998877455 67777667777755 3456655532 346888887 45555 7777774 789
Q ss_pred EEEEECC-CCeEEEEEe
Q 004885 706 ISILDVE-TQVCRLKLQ 721 (725)
Q Consensus 706 V~IwDl~-tg~~v~~l~ 721 (725)
+.|||.+ +.+.+.+|.
T Consensus 256 ~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 256 YAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEEESSTTCCEEEEEE
T ss_pred EEEEECCCCCcEEEEEE
Confidence 9999997 778888774
No 279
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.49 E-value=0.0055 Score=72.51 Aligned_cols=159 Identities=9% Similarity=-0.027 Sum_probs=89.5
Q ss_pred CCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCC--eE--EEEeccCCCCeEEEEEcCCCCEEEEEeCC----CeEEEE
Q 004885 556 SKVESCHFSPDGKLLATGGH---DKKAVLWCTESF--TV--KSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVW 624 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~---Dg~V~IWdl~~~--~~--i~~l~~H~~~V~~IafsPd~~~Lasgs~D----gtIrvW 624 (725)
.....+.|||||++|+..+. ...|+++|+.++ .. .............+.|+..+.+++....+ ..|.++
T Consensus 271 ~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~ 350 (751)
T 2xe4_A 271 LFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIA 350 (751)
T ss_dssp TCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEE
T ss_pred ceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEE
Confidence 34678899999998876653 346888898765 23 22233345566777766544445555444 366777
Q ss_pred ECCCCCeeeEE-EecCCCCeEEEEEccCCCeEEEEEeCCCc--EEEEEC-------CCCeeEEEEecCCC--eEEEEE--
Q 004885 625 DTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSI-------NNGSCAGVFKCQSG--ATQMRF-- 690 (725)
Q Consensus 625 Dl~~~~~~l~~-~~~h~~~V~sl~fsP~g~~llaSgs~Dg~--I~IwDl-------~t~~~v~~~~~~~~--V~sv~f-- 690 (725)
|+.++. .... +..+...+.--.|.+.++.++++...++. |+++|+ ..+..+..+..... +..+.+
T Consensus 351 d~~~~~-~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~ 429 (751)
T 2xe4_A 351 PRGQPS-DWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQ 429 (751)
T ss_dssp ETTSTT-CCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGG
T ss_pred cCCCcc-cceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCc
Confidence 776532 2233 33444433323344456778888887875 556675 34431334433222 333332
Q ss_pred --ecCCCEEE-EEEcC---CeEEEEECCCCe
Q 004885 691 --QPRLGRIL-AAAIE---NYISILDVETQV 715 (725)
Q Consensus 691 --spdg~~Ll-a~s~D---g~V~IwDl~tg~ 715 (725)
++++..++ +.++. ..|..+|+.+++
T Consensus 430 ~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 430 MLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp CCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred ccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 34555443 43432 568888888775
No 280
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.48 E-value=0.032 Score=66.01 Aligned_cols=152 Identities=8% Similarity=-0.020 Sum_probs=104.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec----cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004885 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~----~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~ 630 (725)
...|.+++..+++++|.+|+.++-|.+||..+++...... .+...|.++...+++.+.+.. .+ -|.+||..++.
T Consensus 405 ~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~ 482 (795)
T 4a2l_A 405 SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRS 482 (795)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTE
T ss_pred CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCe
Confidence 3569999998888856677777789999988776543322 134679999998888755544 44 58889988754
Q ss_pred eeeEEEec-------CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe--------cCCCeEEEEEecCCC
Q 004885 631 YSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--------CQSGATQMRFQPRLG 695 (725)
Q Consensus 631 ~~l~~~~~-------h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~--------~~~~V~sv~fspdg~ 695 (725)
...+.. ....|.++..+++|. +.+.. . +.|.+||..++.. .+. ....|.+|..+++|.
T Consensus 483 --~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt-~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~ 555 (795)
T 4a2l_A 483 --FTTIEKEKDGTPVVSKQITTLFRDSHKR-LWIGG-E-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGI 555 (795)
T ss_dssp --EEECCBCTTCCBCCCCCEEEEEECTTCC-EEEEE-S-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSC
T ss_pred --EEEccccccccccCCceEEEEEECCCCC-EEEEe-C-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCC
Confidence 232221 235689999999887 44333 3 4588999887766 332 134689999988866
Q ss_pred EEEEEEcCCeEEEEECCCCeEE
Q 004885 696 RILAAAIENYISILDVETQVCR 717 (725)
Q Consensus 696 ~Lla~s~Dg~V~IwDl~tg~~v 717 (725)
.. +++.+ .|..||..+++..
T Consensus 556 lW-igT~~-Gl~~~d~~~~~~~ 575 (795)
T 4a2l_A 556 IW-VGTRE-GFYCFNEKDKQIK 575 (795)
T ss_dssp EE-EEESS-CEEEEETTTTEEE
T ss_pred EE-EEeCC-CceeECCCCCcEE
Confidence 44 44444 6888998877554
No 281
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.47 E-value=0.004 Score=68.83 Aligned_cols=153 Identities=10% Similarity=0.062 Sum_probs=98.6
Q ss_pred CeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC----Ce-EEEEECCCC
Q 004885 557 KVESCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RT-VRVWDTENP 629 (725)
Q Consensus 557 ~V~~i~fSpd--g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D----gt-IrvWDl~~~ 629 (725)
.-.+++|+|+ +..|+.+...+.|+.+|..++...... .......+|+|+++++ |+.+... .. +...+....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 4578999984 445666655589999999877665443 3456689999999999 5544432 22 333333222
Q ss_pred CeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEE-ec--CCCeEEEEEecCCCEEEEEEc-CCe
Q 004885 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KC--QSGATQMRFQPRLGRILAAAI-ENY 705 (725)
Q Consensus 630 ~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~-~~--~~~V~sv~fspdg~~Lla~s~-Dg~ 705 (725)
......+. .......++++|+...++++-..++.|+.+|..++.....+ .. ......|+|+|++++|+++.. .+.
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 11111222 23445778899944447766667788999999877763333 22 223457999999997766655 688
Q ss_pred EEEEECC
Q 004885 706 ISILDVE 712 (725)
Q Consensus 706 V~IwDl~ 712 (725)
|+.+|+.
T Consensus 297 I~~~~~d 303 (433)
T 4hw6_A 297 IYRVDYN 303 (433)
T ss_dssp EEEEEBC
T ss_pred EEEEeCC
Confidence 9998865
No 282
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.42 E-value=0.017 Score=63.66 Aligned_cols=117 Identities=16% Similarity=0.088 Sum_probs=75.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCC-C----cEEEEECCCC-eEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEC
Q 004885 554 STSKVESCHFSPDGKLLATGGHD-K----KAVLWCTESF-TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDT 626 (725)
Q Consensus 554 H~~~V~~i~fSpdg~~LaSgs~D-g----~V~IWdl~~~-~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl 626 (725)
.......|+|++++++|+++... + .+.+++.... .....+.. .....+++++| ++.++++-..++.|..||.
T Consensus 177 ~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~ 255 (430)
T 3tc9_A 177 GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDF 255 (430)
T ss_dssp CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEET
T ss_pred CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEEC
Confidence 44568899999999966666542 2 3444443321 11122222 33467888999 6666666666789999999
Q ss_pred CCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC
Q 004885 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (725)
Q Consensus 627 ~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~ 671 (725)
...........+.......|+|+|++++++++-...+.|..++.+
T Consensus 256 ~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 256 TTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp TTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 866521111112224568899999999778777778899998765
No 283
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.41 E-value=0.0052 Score=71.38 Aligned_cols=162 Identities=10% Similarity=0.030 Sum_probs=97.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEeccCC-CCeEEEEEcCCCCEEEEEe-CC-----CeEEEEEC
Q 004885 555 TSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSS-AD-----RTVRVWDT 626 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~-Dg~V~IWdl~~~~~i~~l~~H~-~~V~~IafsPd~~~Lasgs-~D-----gtIrvWDl 626 (725)
.....++++..+++++++|+. +..+.+||..+.+-...-..+. ..-.++++.+++++++.|+ .+ ..+.+||.
T Consensus 242 ~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~ 321 (656)
T 1k3i_A 242 DMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSP 321 (656)
T ss_dssp CCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEET
T ss_pred CCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCC
Confidence 334456788889999999984 4589999987654332211111 1223455667888888888 44 46889998
Q ss_pred CCCCeeeE------------------------EEecCC---------------------------------------CCe
Q 004885 627 ENPDYSLR------------------------TFTGHS---------------------------------------TTV 643 (725)
Q Consensus 627 ~~~~~~l~------------------------~~~~h~---------------------------------------~~V 643 (725)
.+...... .+-+.. ...
T Consensus 322 ~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~ 401 (656)
T 1k3i_A 322 SSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCG 401 (656)
T ss_dssp TTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTC
T ss_pred CCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCC
Confidence 76531110 000000 012
Q ss_pred EEEEEccCCCeEEEEEeCCC-----------cEEEEECCCCeeEEEE--ec--CCCeEEEEEecCCCEEEEEEcC-----
Q 004885 644 MSLDFHPSKEDLLCSCDNNS-----------EIRYWSINNGSCAGVF--KC--QSGATQMRFQPRLGRILAAAIE----- 703 (725)
Q Consensus 644 ~sl~fsP~g~~llaSgs~Dg-----------~I~IwDl~t~~~v~~~--~~--~~~V~sv~fspdg~~Lla~s~D----- 703 (725)
.++.|...+..+++.|+.++ .|.+||..+....... .. .....++++.|++..+++++.+
T Consensus 402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~ 481 (656)
T 1k3i_A 402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF 481 (656)
T ss_dssp EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT
T ss_pred ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCc
Confidence 33444343455777776432 6788888877665443 11 2223455677888888888754
Q ss_pred ------CeEEEEECCCCeE
Q 004885 704 ------NYISILDVETQVC 716 (725)
Q Consensus 704 ------g~V~IwDl~tg~~ 716 (725)
..+.+||.++.+.
T Consensus 482 ~~~~~~~~v~~ydp~t~~W 500 (656)
T 1k3i_A 482 EDSTPVFTPEIYVPEQDTF 500 (656)
T ss_dssp CCCSBCCCCEEEEGGGTEE
T ss_pred CCCCcccceEEEcCCCCce
Confidence 5689999987653
No 284
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.36 E-value=0.017 Score=60.96 Aligned_cols=157 Identities=9% Similarity=-0.015 Sum_probs=104.4
Q ss_pred CeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeE-EEEeccCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCeee
Q 004885 557 KVESCHFSPDGKLL-ATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSL 633 (725)
Q Consensus 557 ~V~~i~fSpdg~~L-aSgs~Dg~V~IWdl~~~~~-i~~l~~H~~~V~~IafsPd~~~L-asgs~DgtIrvWDl~~~~~~l 633 (725)
.+..++|++.+..| .+-...+.|..++.+.... ...+...-.....+++.+.+..| ++-...+.|.+++++... ..
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~ 114 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-RK 114 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc-EE
Confidence 36789999855544 4545678899999876532 12222223456789999855555 454567899999997644 22
Q ss_pred EEEecCCCCeEEEEEccCCCeEEEEEe-CCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEc-CCeEEEEE
Q 004885 634 RTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI-ENYISILD 710 (725)
Q Consensus 634 ~~~~~h~~~V~sl~fsP~g~~llaSgs-~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~-Dg~V~IwD 710 (725)
..+.........|+++|.+..++++-. ..+.|..++++.......... -.....|+|+++++.|+.+.. .+.|..+|
T Consensus 115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d 194 (318)
T 3sov_A 115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN 194 (318)
T ss_dssp EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEc
Confidence 333344456789999998776776653 357899998874332222222 345789999998888887765 58899999
Q ss_pred CCCC
Q 004885 711 VETQ 714 (725)
Q Consensus 711 l~tg 714 (725)
+...
T Consensus 195 ~dG~ 198 (318)
T 3sov_A 195 LDGT 198 (318)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 8743
No 285
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.32 E-value=0.0042 Score=69.81 Aligned_cols=153 Identities=15% Similarity=0.157 Sum_probs=100.2
Q ss_pred eEEEEEcC-CCCEEEEEeC-CCcEEEEECCCCeEEEEeccC---CCCeEEEEE-------cCCCCEEEEEeCCC------
Q 004885 558 VESCHFSP-DGKLLATGGH-DKKAVLWCTESFTVKSTLEEH---TQWITDVRF-------SPSLSRLATSSADR------ 619 (725)
Q Consensus 558 V~~i~fSp-dg~~LaSgs~-Dg~V~IWdl~~~~~i~~l~~H---~~~V~~Iaf-------sPd~~~Lasgs~Dg------ 619 (725)
...|+|+| +...|+++.. .+.|++.|++++.....+..- ......|+| ++++++|+++...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 56899998 3454555444 467888998887766544331 235899999 99999777776543
Q ss_pred -eEEEEECCC-CCee----eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC-------CCee-----------
Q 004885 620 -TVRVWDTEN-PDYS----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-------NGSC----------- 675 (725)
Q Consensus 620 -tIrvWDl~~-~~~~----l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~-------t~~~----------- 675 (725)
.|.+++... +... ...+... .....++++|++..|+++...++.|+.+|+. ++..
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~ 299 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT 299 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred ceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence 256665443 1211 0222221 2356788999777788888788899999997 5543
Q ss_pred EEE-Eec--CCCeEEEEEecCCCEEEEEEc-CCeEEEEEC
Q 004885 676 AGV-FKC--QSGATQMRFQPRLGRILAAAI-ENYISILDV 711 (725)
Q Consensus 676 v~~-~~~--~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl 711 (725)
... +.. ......|+|+|+|.+|+++.. ...|+.+|.
T Consensus 300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 112 222 345789999999997666654 678988654
No 286
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.32 E-value=0.058 Score=62.47 Aligned_cols=162 Identities=9% Similarity=-0.059 Sum_probs=109.2
Q ss_pred CCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCCee
Q 004885 556 SKVESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYS 632 (725)
Q Consensus 556 ~~V~~i~fSpdg~~L-aSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~--DgtIrvWDl~~~~~~ 632 (725)
.....+++.+.+..| ++-...+.|.+.+++.......+...-.....|+++|...+|+.... .+.|...+++...
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-- 157 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-- 157 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc--
Confidence 346788888765544 45455678999998765433333334456789999996666666653 4678888887554
Q ss_pred eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEc-CCeEEEEEC
Q 004885 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDV 711 (725)
Q Consensus 633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl 711 (725)
...+...-.....|++++++..++++-...+.|..+|+...........-.....|++.. ..|+.+.. .+.|...|.
T Consensus 158 ~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~--~~ly~tD~~~~~I~~~dk 235 (628)
T 4a0p_A 158 RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ--DYIYWTDWSRRSIERANK 235 (628)
T ss_dssp CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET--TEEEEEETTTTEEEEEET
T ss_pred eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC--CEEEEecCCCCEEEEEEC
Confidence 333333445688999999888788777778899999997644422222244567888865 46666655 688999998
Q ss_pred CCCeEEEEEe
Q 004885 712 ETQVCRLKLQ 721 (725)
Q Consensus 712 ~tg~~v~~l~ 721 (725)
.+|+.+..+.
T Consensus 236 ~tg~~~~~l~ 245 (628)
T 4a0p_A 236 TSGQNRTIIQ 245 (628)
T ss_dssp TTCCSCEEEE
T ss_pred CCCCceEEEe
Confidence 8886555544
No 287
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.27 E-value=0.00082 Score=79.04 Aligned_cols=161 Identities=9% Similarity=-0.031 Sum_probs=103.0
Q ss_pred eEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-C-CeEEEEECCCCCeeeE
Q 004885 558 VESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-D-RTVRVWDTENPDYSLR 634 (725)
Q Consensus 558 V~~i~fSpd-g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-D-gtIrvWDl~~~~~~l~ 634 (725)
...|++.+. ++++++-...+.|.+++++.......+.........|+++|.+.+|+.+.. . +.|.++++.... ...
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~ 533 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYS 533 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCE
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeE
Confidence 456777754 444455455788999998765544444333345678899997665555543 2 678888776433 122
Q ss_pred EEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeEEEEEecCCCEEEEEE-cCCeEEEEE
Q 004885 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAA-IENYISILD 710 (725)
Q Consensus 635 ~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~---~~~V~sv~fspdg~~Lla~s-~Dg~V~IwD 710 (725)
.+.........|+|+|++..|+++-...+.|.++|+........+.. ......|++..+ .|+.+. ..+.|.++|
T Consensus 534 l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d 611 (699)
T 1n7d_A 534 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSAN 611 (699)
T ss_dssp ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEE
T ss_pred EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEE
Confidence 22222345678999998887887777778999999975433333221 133556666654 455444 468999999
Q ss_pred CCCCeEEEEEe
Q 004885 711 VETQVCRLKLQ 721 (725)
Q Consensus 711 l~tg~~v~~l~ 721 (725)
..+|+.+..|.
T Consensus 612 ~~~G~~~~~i~ 622 (699)
T 1n7d_A 612 RLTGSDVNLLA 622 (699)
T ss_dssp TTTEEEEECCC
T ss_pred ccCCCceEEee
Confidence 99998887764
No 288
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.21 E-value=0.011 Score=68.01 Aligned_cols=149 Identities=9% Similarity=-0.005 Sum_probs=95.4
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEeccCC----CCeEE-EEEcCCCCEEEEEe------CCCeEEEEECCCCCeeeEEEe
Q 004885 569 LLATGGHDKKAVLWCTESFTVKSTLEEHT----QWITD-VRFSPSLSRLATSS------ADRTVRVWDTENPDYSLRTFT 637 (725)
Q Consensus 569 ~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~----~~V~~-IafsPd~~~Lasgs------~DgtIrvWDl~~~~~~l~~~~ 637 (725)
+|++++.|+.|+.+|..+++.+....... ..+++ ..+. + ..|++++ .++.|+.+|.++++ .+-.+.
T Consensus 123 rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~-g~V~vg~~g~e~g~~g~v~A~D~~TG~-~~W~~~ 199 (599)
T 1w6s_A 123 LILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-K-DKVIIGSSGAELGVRGYLTAYDVKTGE-QVWRAY 199 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-T-TEEEECCBCGGGTCCCEEEEEETTTCC-EEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-C-CEEEEEecccccCCCCeEEEEECCCCc-EEEEEc
Confidence 38888899999999999999887764322 01211 1111 3 4555554 38999999999988 333332
Q ss_pred cCCCC-------------------------------------e-EEEEEccCCCeEEEEEeCC----------------C
Q 004885 638 GHSTT-------------------------------------V-MSLDFHPSKEDLLCSCDNN----------------S 663 (725)
Q Consensus 638 ~h~~~-------------------------------------V-~sl~fsP~g~~llaSgs~D----------------g 663 (725)
..... + ..+++++....++ .+..+ +
T Consensus 200 ~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy-~g~g~~~p~~~~~r~gd~~y~~ 278 (599)
T 1w6s_A 200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIY-FGTGNPAPWNETMRPGDNKWTM 278 (599)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEE-EECCCCSCSCGGGSCSCCTTSS
T ss_pred CCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEE-EeCCCCccccCcccCCCccccc
Confidence 11100 1 1345667766444 44433 3
Q ss_pred cEEEEECCCCeeEEEEecCCC-------e---EEEEEe-cCC---CEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 664 EIRYWSINNGSCAGVFKCQSG-------A---TQMRFQ-PRL---GRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 664 ~I~IwDl~t~~~v~~~~~~~~-------V---~sv~fs-pdg---~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
.|..+|.++|+.+..+..... + .-+... .+| ..++.++.+|.|+++|.++|+.+-.++
T Consensus 279 sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 799999999999988875211 1 112222 466 345667789999999999999987765
No 289
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.15 E-value=0.082 Score=55.60 Aligned_cols=160 Identities=11% Similarity=0.151 Sum_probs=98.1
Q ss_pred CceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC--CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 004885 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT--ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (725)
Q Consensus 542 ~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl--~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dg 619 (725)
+.++..+. ..+...+.++++.+++.+++++...+.++-+|- .+.+.+. ......+..+.+.+++..+ .++.+|
T Consensus 151 G~tW~~~~--~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G 225 (327)
T 2xbg_A 151 GKNWQALV--QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGG 225 (327)
T ss_dssp TSSEEEEE--CSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTT
T ss_pred CCCCEEee--cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCc
Confidence 45565543 245567999999999888877654443344442 3344432 2345678999999988755 445678
Q ss_pred eEEEEECCCCCeeeEEEe-c---CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec----CCCeEEEEEe
Q 004885 620 TVRVWDTENPDYSLRTFT-G---HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGATQMRFQ 691 (725)
Q Consensus 620 tIrvWDl~~~~~~l~~~~-~---h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~----~~~V~sv~fs 691 (725)
.+++++.+.+. ....+. . +...+.+|.|.+++. +++++. ++.| ++..+.++.-..+.. ...+.+|.|.
T Consensus 226 ~~~~s~~D~G~-tW~~~~~~~~~~~~~~~~v~~~~~~~-~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~ 301 (327)
T 2xbg_A 226 KIAFSDPDNSE-NWGELLSPLRRNSVGFLDLAYRTPNE-VWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFF 301 (327)
T ss_dssp EEEEEETTEEE-EECCCBCTTSSCCSCEEEEEESSSSC-EEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEE
T ss_pred eEEEecCCCCC-eeEeccCCcccCCcceEEEEecCCCE-EEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEE
Confidence 87776533222 111111 1 223588999998765 555544 6767 455555543333331 3568889997
Q ss_pred cCCCEEEEEEcCCeEEEEEC
Q 004885 692 PRLGRILAAAIENYISILDV 711 (725)
Q Consensus 692 pdg~~Lla~s~Dg~V~IwDl 711 (725)
++ ..+++++.+|.|..++-
T Consensus 302 ~~-~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 302 SP-DQGFILGQKGILLRYVT 320 (327)
T ss_dssp ET-TEEEEECSTTEEEEECC
T ss_pred CC-CceEEEcCCceEEEEcC
Confidence 55 56778888998877753
No 290
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.10 E-value=0.0096 Score=68.38 Aligned_cols=133 Identities=11% Similarity=0.109 Sum_probs=86.0
Q ss_pred CCCC---EEEEEeCCCcEEEEECCCCeEEEEeccCC-------------CCe----------------------------
Q 004885 565 PDGK---LLATGGHDKKAVLWCTESFTVKSTLEEHT-------------QWI---------------------------- 600 (725)
Q Consensus 565 pdg~---~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~-------------~~V---------------------------- 600 (725)
.+|+ .|+.++.+|.|+++|.++++.+..+.... .++
T Consensus 331 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~G 410 (582)
T 1flg_A 331 KDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLG 410 (582)
T ss_dssp SSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTC
T ss_pred CCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCcc
Confidence 4674 78889999999999999999887654321 000
Q ss_pred ----EEEEEcCCCCEEEEEe---------------------------------CCCeEEEEECCCCCeeeEEEecCCCCe
Q 004885 601 ----TDVRFSPSLSRLATSS---------------------------------ADRTVRVWDTENPDYSLRTFTGHSTTV 643 (725)
Q Consensus 601 ----~~IafsPd~~~Lasgs---------------------------------~DgtIrvWDl~~~~~~l~~~~~h~~~V 643 (725)
..++++|+..++++.. .++.|..||+.+++ .+-.+... ..+
T Consensus 411 g~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~-~~W~~~~~-~~~ 488 (582)
T 1flg_A 411 GKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGK-VVWEHKEH-LPL 488 (582)
T ss_dssp SSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCC-EEEEEEES-SCC
T ss_pred ccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCC-EEEEecCC-CCC
Confidence 1345666544554432 25789999999988 33333222 122
Q ss_pred EEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeE--EEEEecCCCEEEEE
Q 004885 644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT--QMRFQPRLGRILAA 700 (725)
Q Consensus 644 ~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~--sv~fspdg~~Lla~ 700 (725)
..-.....+. +++.++.|+.|+.||.++|+.+..++....+. -+.|..+|+.+++.
T Consensus 489 ~~g~~~tagg-lvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~ 546 (582)
T 1flg_A 489 WAGVLATAGN-LVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGV 546 (582)
T ss_dssp CSCCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred cccceEeCCC-EEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEE
Confidence 1111122345 55568899999999999999999998755543 36677787644443
No 291
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.09 E-value=0.055 Score=63.83 Aligned_cols=154 Identities=9% Similarity=-0.016 Sum_probs=101.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004885 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~--~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~ 632 (725)
...|.++...+++.+.+ |+.++-|.++|..+++...... .....|.+|...+++.+. .|+. +-|.+||..+...
T Consensus 406 ~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lw-igt~-~Gl~~~~~~~~~~- 481 (781)
T 3v9f_A 406 SNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIW-IGTH-AGVFVIDLASKKV- 481 (781)
T ss_dssp CSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEE-EEET-TEEEEEESSSSSC-
T ss_pred CcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEE-EEEC-CceEEEeCCCCeE-
Confidence 45699999988887554 6666779999987765443221 134679999988877644 4455 5688999887652
Q ss_pred eEEEecC-----CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-----CCCeEEEEEecCCCEEEEEEc
Q 004885 633 LRTFTGH-----STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQPRLGRILAAAI 702 (725)
Q Consensus 633 l~~~~~h-----~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-----~~~V~sv~fspdg~~Lla~s~ 702 (725)
....... ...|.++..+++|. +.+ ++.++.|..||..+++... +.. ...|.++...++|.. .+++.
T Consensus 482 ~~~~~~~~~~~~~~~i~~i~~d~~g~-lWi-gt~~~Gl~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~g~l-Wi~T~ 557 (781)
T 3v9f_A 482 IHHYDTSNSQLLENFVRSIAQDSEGR-FWI-GTFGGGVGIYTPDMQLVRK-FNQYEGFCSNTINQIYRSSKGQM-WLATG 557 (781)
T ss_dssp CEEECTTTSSCSCSCEEEEEECTTCC-EEE-EESSSCEEEECTTCCEEEE-ECTTTTCSCSCEEEEEECTTSCE-EEEET
T ss_pred EecccCcccccccceeEEEEEcCCCC-EEE-EEcCCCEEEEeCCCCeEEE-ccCCCCCCCCeeEEEEECCCCCE-EEEEC
Confidence 2222111 35799999999887 443 3433458889988765433 321 345889998888664 44555
Q ss_pred CCeEEEEECCCCeE
Q 004885 703 ENYISILDVETQVC 716 (725)
Q Consensus 703 Dg~V~IwDl~tg~~ 716 (725)
+|.|..||.++++.
T Consensus 558 ~Glv~~~d~~~~~~ 571 (781)
T 3v9f_A 558 EGLVCFPSARNFDY 571 (781)
T ss_dssp TEEEEESCTTTCCC
T ss_pred CCceEEECCCCCcE
Confidence 66558888877653
No 292
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.05 E-value=0.068 Score=61.74 Aligned_cols=162 Identities=8% Similarity=-0.043 Sum_probs=105.4
Q ss_pred CCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCCee
Q 004885 556 SKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYS 632 (725)
Q Consensus 556 ~~V~~i~fSpdg~~La-Sgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~--DgtIrvWDl~~~~~~ 632 (725)
.....+++.+.+..|+ +-...+.|.+.+++.......+...-.....|+++|...+|+.... .+.|...+++... .
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~-~ 162 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-R 162 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS-C
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc-e
Confidence 4688999998655454 4456789999998765443333344556789999997666666654 3567777776543 2
Q ss_pred eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeEEEEEecCCCEEEEEEc-CCeEEEEE
Q 004885 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI-ENYISILD 710 (725)
Q Consensus 633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~-~~~~V~sv~fspdg~~Lla~s~-Dg~V~IwD 710 (725)
.............|++++++..++++-...+.|..+|+.......... .......|++..+ .|+.+.. .+.|...|
T Consensus 163 ~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d 240 (619)
T 3s94_A 163 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACN 240 (619)
T ss_dssp EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEE
T ss_pred EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEE
Confidence 233333345678999999888788776677889999997544333322 1233456777655 5665554 67899999
Q ss_pred CCCCeEEEEE
Q 004885 711 VETQVCRLKL 720 (725)
Q Consensus 711 l~tg~~v~~l 720 (725)
..+|+.+..+
T Consensus 241 ~~tg~~~~~i 250 (619)
T 3s94_A 241 KYTGEGLREI 250 (619)
T ss_dssp SSSCCCCEEC
T ss_pred CCCCcccEEE
Confidence 9888655544
No 293
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.05 E-value=0.066 Score=62.00 Aligned_cols=158 Identities=8% Similarity=-0.008 Sum_probs=109.8
Q ss_pred CCeEEEEEcCCCCEEEE-EeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCCeee
Q 004885 556 SKVESCHFSPDGKLLAT-GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSL 633 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaS-gs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasg-s~DgtIrvWDl~~~~~~l 633 (725)
..+..|+|++.+..|+. -..++.|+.++++.......+..-......|++++.+..|+.+ ...+.|.+.+++... ..
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~-~~ 115 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH-RQ 115 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT-CE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc-EE
Confidence 35789999986665554 4567899999987654444444333457789998866655554 456789999997654 22
Q ss_pred EEEecCCCCeEEEEEccCCCeEEEEEe-CCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEc-CCeEEEEEC
Q 004885 634 RTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDV 711 (725)
Q Consensus 634 ~~~~~h~~~V~sl~fsP~g~~llaSgs-~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl 711 (725)
..+...-.....|+++|....++++-- ..+.|...++........+..-.....|+++++++.|+.+.. .+.|..+|+
T Consensus 116 ~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~ 195 (628)
T 4a0p_A 116 VLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM 195 (628)
T ss_dssp EEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence 233234456789999997776776642 256888888875544444444566899999998888887765 578999998
Q ss_pred CCC
Q 004885 712 ETQ 714 (725)
Q Consensus 712 ~tg 714 (725)
...
T Consensus 196 dG~ 198 (628)
T 4a0p_A 196 LGL 198 (628)
T ss_dssp TSC
T ss_pred CCC
Confidence 754
No 294
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.98 E-value=0.11 Score=61.33 Aligned_cols=155 Identities=8% Similarity=0.007 Sum_probs=101.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe---ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 004885 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL---EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l---~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~ 631 (725)
...|.+++..++|++. .|+.++-|.+||..+....... ......|.++...+++.+. .|+.++-|.++|..++.
T Consensus 362 ~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~- 438 (781)
T 3v9f_A 362 NKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLW-FGTYLGNISYYNTRLKK- 438 (781)
T ss_dssp SSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEE-EEETTEEEEEECSSSCE-
T ss_pred CcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEE-EEeccCCEEEEcCCCCc-
Confidence 3569999998877744 5555666889997654322111 1234679999988877654 46666778899987654
Q ss_pred eeEEEe---cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec------CCCeEEEEEecCCCEEEEEEc
Q 004885 632 SLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------QSGATQMRFQPRLGRILAAAI 702 (725)
Q Consensus 632 ~l~~~~---~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~------~~~V~sv~fspdg~~Lla~s~ 702 (725)
+..+. .....|.++..++++. +++ ++. +.|.+||..+++....... ...|.+++..++|. |.+++.
T Consensus 439 -~~~~~~~~~~~~~v~~i~~d~~g~-lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~ 513 (781)
T 3v9f_A 439 -FQIIELEKNELLDVRVFYEDKNKK-IWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGR-FWIGTF 513 (781)
T ss_dssp -EEECCSTTTCCCCEEEEEECTTSE-EEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCC-EEEEES
T ss_pred -EEEeccCCCCCCeEEEEEECCCCC-EEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCC-EEEEEc
Confidence 33332 1345799999888876 443 343 5689999987765443322 25689999988865 455565
Q ss_pred CCeEEEEECCCCeEE
Q 004885 703 ENYISILDVETQVCR 717 (725)
Q Consensus 703 Dg~V~IwDl~tg~~v 717 (725)
++.|..||.++++..
T Consensus 514 ~~Gl~~~~~~~~~~~ 528 (781)
T 3v9f_A 514 GGGVGIYTPDMQLVR 528 (781)
T ss_dssp SSCEEEECTTCCEEE
T ss_pred CCCEEEEeCCCCeEE
Confidence 455888988776543
No 295
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.90 E-value=0.12 Score=54.27 Aligned_cols=159 Identities=14% Similarity=0.123 Sum_probs=89.5
Q ss_pred CceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE-EEeccCCCCeEEEEEcCCCCEEEEEeCCCe
Q 004885 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSPSLSRLATSSADRT 620 (725)
Q Consensus 542 ~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i-~~l~~H~~~V~~IafsPd~~~Lasgs~Dgt 620 (725)
+.++..+.....+.+.+.+|.+.+++..++++ .++.|.. ..+.++.- .....+...+..+++.+++.+++++.....
T Consensus 108 G~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~ 185 (327)
T 2xbg_A 108 GQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSF 185 (327)
T ss_dssp TSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSE
T ss_pred CCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcE
Confidence 34455443322344557888887777666655 4665433 22223222 222345667899999999888877755544
Q ss_pred EEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-----cCCCeEEEEEecCCC
Q 004885 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----CQSGATQMRFQPRLG 695 (725)
Q Consensus 621 IrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~-----~~~~V~sv~fspdg~ 695 (725)
++-+|-.... -...-......+..+.+.+++. +++ ++.+|.|++++.+.+..-..+. ....+.++.|.+++.
T Consensus 186 ~~S~d~gG~t-W~~~~~~~~~~~~~~~~~~~g~-~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~ 262 (327)
T 2xbg_A 186 YSTWEPGQTA-WEPHNRTTSRRLHNMGFTPDGR-LWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNE 262 (327)
T ss_dssp EEEECTTCSS-CEEEECCSSSCEEEEEECTTSC-EEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSC
T ss_pred EEEeCCCCCc-eeECCCCCCCccceeEECCCCC-EEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCE
Confidence 4545531111 1111233456789999999876 443 4457888777533233222222 123588899988755
Q ss_pred EEEEEEcCCeE
Q 004885 696 RILAAAIENYI 706 (725)
Q Consensus 696 ~Lla~s~Dg~V 706 (725)
+++++.++.|
T Consensus 263 -~~~~g~~g~i 272 (327)
T 2xbg_A 263 -VWLAGGAGAL 272 (327)
T ss_dssp -EEEEESTTCE
T ss_pred -EEEEeCCCeE
Confidence 4555566766
No 296
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.85 E-value=0.08 Score=56.88 Aligned_cols=162 Identities=15% Similarity=0.144 Sum_probs=100.1
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEe------------CCCcEEEEECCC--CeEE-EEecc-----CCCCeEEEEEcC-
Q 004885 549 QLIPASTSKVESCHFSPDGKLLATGG------------HDKKAVLWCTES--FTVK-STLEE-----HTQWITDVRFSP- 607 (725)
Q Consensus 549 ~~l~~H~~~V~~i~fSpdg~~LaSgs------------~Dg~V~IWdl~~--~~~i-~~l~~-----H~~~V~~IafsP- 607 (725)
..+++-.....++++.|+|..+++++ .+|.|.++|.++ .+.. ..+.+ .......|.+.+
T Consensus 43 ~~i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d 122 (355)
T 3sre_A 43 NLVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFID 122 (355)
T ss_dssp EECTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEEC
T ss_pred EEeCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEEC
Confidence 33444333466777888876555552 689999999873 2221 12222 234667777766
Q ss_pred -CCC-EEEEEeC---CCeEEEEECCCCCee---eEEEecC-CCCeEEEEEccCCCeEEEEEeC-----------------
Q 004885 608 -SLS-RLATSSA---DRTVRVWDTENPDYS---LRTFTGH-STTVMSLDFHPSKEDLLCSCDN----------------- 661 (725)
Q Consensus 608 -d~~-~Lasgs~---DgtIrvWDl~~~~~~---l~~~~~h-~~~V~sl~fsP~g~~llaSgs~----------------- 661 (725)
++. +|+++.. +.+|.+|+++..... +..+.+. -...+.+++.++|. ++++.+.
T Consensus 123 ~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~ 201 (355)
T 3sre_A 123 DDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLA 201 (355)
T ss_dssp TTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCC
T ss_pred CCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCC
Confidence 343 5666543 467888887754322 2233322 24579999999987 6656541
Q ss_pred CCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCC
Q 004885 662 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVET 713 (725)
Q Consensus 662 Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~t 713 (725)
.|.|..||. +++......-...+.|+|+||+++|+++.. .+.|.+||+..
T Consensus 202 ~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 202 WSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp CEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred ccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 244555554 444433443456899999999998888765 68999999863
No 297
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.83 E-value=0.31 Score=51.55 Aligned_cols=158 Identities=16% Similarity=0.212 Sum_probs=102.5
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecC
Q 004885 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639 (725)
Q Consensus 560 ~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h 639 (725)
+.-.+|..+.||.-. ..++.|+|+++...+..+.- ...|..-.|-.+..+-++. +..|..|+++....++..|.-|
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~~L~lVT--~taVyHWs~~~~s~P~kvFdR~ 146 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVT--DNAVYHWSMEGESQPVKMFDRH 146 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSEEEEEE--SSEEEEEESSTTCCCEEEEECC
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCCCeEEEEc--CCcEEEEcccCCCCCceeeecc
Confidence 455688888887765 67899999999888877764 4578788887654433333 6789999998655566666654
Q ss_pred C----CCeEEEEEccCCCeEEEEEe------CCCcEEEEECCCCe-----------------------------------
Q 004885 640 S----TTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGS----------------------------------- 674 (725)
Q Consensus 640 ~----~~V~sl~fsP~g~~llaSgs------~Dg~I~IwDl~t~~----------------------------------- 674 (725)
. ..|..-..+++.++++++|- -.|.+.+|..+.+.
T Consensus 147 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g 226 (365)
T 2xzh_A 147 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 226 (365)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTE
T ss_pred hhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence 3 34555566666665555442 12344455443211
Q ss_pred -eEEEEec------------------------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 675 -CAGVFKC------------------------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 675 -~v~~~~~------------------------~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
.++.++. .+-..++..++..+.++..+.-|.|++||++|+.|+..-+
T Consensus 227 ~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nr 298 (365)
T 2xzh_A 227 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 298 (365)
T ss_dssp EEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred cEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEec
Confidence 1111111 1123455666667788888999999999999999987543
No 298
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.83 E-value=0.12 Score=54.71 Aligned_cols=153 Identities=9% Similarity=0.078 Sum_probs=96.7
Q ss_pred eEEEEE---cCCCCEEEEEeC-------------CCcEEEEECC---CCeEEEEec--c-----------CCCCeEEEEE
Q 004885 558 VESCHF---SPDGKLLATGGH-------------DKKAVLWCTE---SFTVKSTLE--E-----------HTQWITDVRF 605 (725)
Q Consensus 558 V~~i~f---Spdg~~LaSgs~-------------Dg~V~IWdl~---~~~~i~~l~--~-----------H~~~V~~Iaf 605 (725)
+..|.| .|+++++++... +..|..||+. +++.+.... . -...+.+|+.
T Consensus 65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav 144 (334)
T 2p9w_A 65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ 144 (334)
T ss_dssp EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence 578999 588777775442 6789999998 776655442 1 1135889999
Q ss_pred cCCCCEEEEEeCC-CeEEEEECCCCCeeeEEEe-c-----CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee--E
Q 004885 606 SPSLSRLATSSAD-RTVRVWDTENPDYSLRTFT-G-----HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--A 676 (725)
Q Consensus 606 sPd~~~Lasgs~D-gtIrvWDl~~~~~~l~~~~-~-----h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~--v 676 (725)
.++|+..++++.. +.|..++.+... +..+. . .....+.|+++|+|..|++.-+ ++.|..+|+++... +
T Consensus 145 D~~GnaYVt~s~~~~~I~rV~pdG~~--~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~pv~~~v 221 (334)
T 2p9w_A 145 DRDGNSYVAFALGMPAIARVSADGKT--VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKPYAWPE 221 (334)
T ss_dssp CTTSCEEEEEEESSCEEEEECTTSCC--EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSSSCCCE
T ss_pred CCCCCEEEeCCCCCCeEEEEeCCCCE--EeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCCcceee
Confidence 9999999999888 887777776543 22221 1 1223678999999986665555 99999999985433 2
Q ss_pred EEEe-c----CCCeEEE-EEecCCCEEEEEE-cCCeEEEEECCC
Q 004885 677 GVFK-C----QSGATQM-RFQPRLGRILAAA-IENYISILDVET 713 (725)
Q Consensus 677 ~~~~-~----~~~V~sv-~fspdg~~Lla~s-~Dg~V~IwDl~t 713 (725)
..-. + -.....| ..-.+|+.|+++. ..+.+.+.+...
T Consensus 222 ~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 222 PVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp ECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred cccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence 1110 1 1223443 3334556644444 456566665443
No 299
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.80 E-value=0.043 Score=60.04 Aligned_cols=110 Identities=17% Similarity=0.173 Sum_probs=77.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe------------EEEEecc------CCCCeEEEEEcC---CCCEEEEE
Q 004885 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT------------VKSTLEE------HTQWITDVRFSP---SLSRLATS 615 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~------------~i~~l~~------H~~~V~~IafsP---d~~~Lasg 615 (725)
.|..+..||+|++||..+ +..|.|..+..+. ..+.+.- ...+|..+.||| .+..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 578899999999999986 5689998886321 1122221 256799999999 46789999
Q ss_pred eCCCeEEEEECCCCC-eeeEEEe---------cCCCCeEEEEEccCCCeEEEEE-eCCCcEEEE
Q 004885 616 SADRTVRVWDTENPD-YSLRTFT---------GHSTTVMSLDFHPSKEDLLCSC-DNNSEIRYW 668 (725)
Q Consensus 616 s~DgtIrvWDl~~~~-~~l~~~~---------~h~~~V~sl~fsP~g~~llaSg-s~Dg~I~Iw 668 (725)
..|++||+||+.... .+. .+. .....|.+++|..++=.+++.. +.+|.|+-.
T Consensus 146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 999999999998632 122 222 2235689999999776555433 356777654
No 300
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.75 E-value=0.17 Score=55.60 Aligned_cols=161 Identities=14% Similarity=0.200 Sum_probs=109.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeEEEEeccCC----CCeEEEEEcCCCCEEEEEeC-------CCeEEE
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHT----QWITDVRFSPSLSRLATSSA-------DRTVRV 623 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~-~~~i~~l~~H~----~~V~~IafsPd~~~Lasgs~-------DgtIrv 623 (725)
..|..-.|-.+ +.|+..+ +..|+-|+++. ..+++.|..|. ..|..-..+++.++++..+- .|.+-+
T Consensus 106 e~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQL 183 (494)
T 1bpo_A 106 DDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL 183 (494)
T ss_dssp SCCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEE
T ss_pred CCceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEE
Confidence 45777788644 4555554 56899999974 45777776663 45777778888888765432 467889
Q ss_pred EECCCCCeeeEEEecCCCCeEEEEEcc--CCCeEEEEEeCC---CcEEEEECCCC---e-----eEEE-Ee-c---CCCe
Q 004885 624 WDTENPDYSLRTFTGHSTTVMSLDFHP--SKEDLLCSCDNN---SEIRYWSINNG---S-----CAGV-FK-C---QSGA 685 (725)
Q Consensus 624 WDl~~~~~~l~~~~~h~~~V~sl~fsP--~g~~llaSgs~D---g~I~IwDl~t~---~-----~v~~-~~-~---~~~V 685 (725)
|.++... -..+.||...-..+.+.- ....+||.+... +.++|.++... . .... +- . .+-.
T Consensus 184 YS~er~~--sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFP 261 (494)
T 1bpo_A 184 YSVDRKV--SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP 261 (494)
T ss_dssp EESTTCC--EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCE
T ss_pred eeccccc--cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCce
Confidence 9998764 677788765444443321 112366665543 78999998532 1 1111 11 1 3446
Q ss_pred EEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 004885 686 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 720 (725)
Q Consensus 686 ~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l 720 (725)
.++..++..+.++..+.-|.|++||++|+.|+..-
T Consensus 262 vamqvs~kygviyviTK~G~i~lyDleTgt~i~~n 296 (494)
T 1bpo_A 262 VAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (494)
T ss_dssp EEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred eEEEecccCCEEEEEecCceEEEEecccceeeeee
Confidence 78899999999999999999999999999998754
No 301
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.75 E-value=0.064 Score=58.71 Aligned_cols=144 Identities=14% Similarity=0.082 Sum_probs=95.7
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCeEEEEeccC----CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC---------
Q 004885 564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH----TQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--------- 630 (725)
Q Consensus 564 Spdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H----~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~--------- 630 (725)
+.+|..|+.+- ++.||..++......+.++-. -..|..+..+|+|++||..+ +..|.|..+..+.
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence 44677666664 578999988744334444322 23578899999999998885 6688998886322
Q ss_pred --eeeEEEec------CCCCeEEEEEccCCCe--EEEEEeCCCcEEEEECCCC--eeEEEEec----------CCCeEEE
Q 004885 631 --YSLRTFTG------HSTTVMSLDFHPSKED--LLCSCDNNSEIRYWSINNG--SCAGVFKC----------QSGATQM 688 (725)
Q Consensus 631 --~~l~~~~~------h~~~V~sl~fsP~g~~--llaSgs~Dg~I~IwDl~t~--~~v~~~~~----------~~~V~sv 688 (725)
...+.+.- ....|..+.|||.+.. .|++-..|+.||+||+... ++. .++. ...|.++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence 01223322 2467999999997543 5667777999999999852 222 2321 2468899
Q ss_pred EEecCCCEEEEEE--cCCeEEEEE
Q 004885 689 RFQPRLGRILAAA--IENYISILD 710 (725)
Q Consensus 689 ~fspdg~~Lla~s--~Dg~V~IwD 710 (725)
+|..++=.|++.. .+|.|+-..
T Consensus 186 ~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 186 EFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp EECTTSSCEEEEECTTSCEEEEES
T ss_pred EEcCCCcEEEEEecCCCCCEEEEC
Confidence 9999766666655 567776543
No 302
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.69 E-value=0.0024 Score=75.02 Aligned_cols=158 Identities=13% Similarity=0.030 Sum_probs=98.5
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCCcEEEEECCC----CeEEEEeccCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCC
Q 004885 556 SKVESCHFSPDGKLLATGG-HDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENP 629 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs-~Dg~V~IWdl~~----~~~i~~l~~H~~~V~~IafsPd~~~L-asgs~DgtIrvWDl~~~ 629 (725)
..+..|+|++.+..|+.+. ..+.|+.+++.. ......+.........|++.+.+..| ++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 4467899998776666554 457899999875 22222222122345678888654444 44445778999998765
Q ss_pred CeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC-CcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEc-CCeE
Q 004885 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI-ENYI 706 (725)
Q Consensus 630 ~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D-g~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~-Dg~V 706 (725)
. ....+.........|+++|.+.+|+++-... +.|.++++........+.. -.....|+|+|+++.|+++.. .+.|
T Consensus 486 ~-~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I 564 (699)
T 1n7d_A 486 K-RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 564 (699)
T ss_dssp C-EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred c-eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeE
Confidence 4 2222222234567889999877677654333 6888888764322222221 245678999998777766654 5789
Q ss_pred EEEECCCC
Q 004885 707 SILDVETQ 714 (725)
Q Consensus 707 ~IwDl~tg 714 (725)
.++|+...
T Consensus 565 ~~~d~dG~ 572 (699)
T 1n7d_A 565 SSIDVNGG 572 (699)
T ss_dssp EEECSSSS
T ss_pred EEEccCCC
Confidence 99998753
No 303
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.67 E-value=0.0054 Score=71.25 Aligned_cols=155 Identities=7% Similarity=0.032 Sum_probs=91.5
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------cEEEEECCCCe--EEEEec-cCCCCeEEEEEcCCCCEEEEEeC-CCeEEE
Q 004885 560 SCHFSP-DGKLLATGGHDK-----------KAVLWCTESFT--VKSTLE-EHTQWITDVRFSPSLSRLATSSA-DRTVRV 623 (725)
Q Consensus 560 ~i~fSp-dg~~LaSgs~Dg-----------~V~IWdl~~~~--~i~~l~-~H~~~V~~IafsPd~~~Lasgs~-DgtIrv 623 (725)
.+++.+ ++++++.|+.+. .+.+||..+.+ .+..+. .+...+.++++..++++++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 888888887653 58899987654 222332 23344556788889999999884 558999
Q ss_pred EECCCCCeeeEEEe-cC-CCCeEEEEEccCCCeEEEEEe-CC-----CcEEEEECCCCeeEEEE-----ecCCCeEEEEE
Q 004885 624 WDTENPDYSLRTFT-GH-STTVMSLDFHPSKEDLLCSCD-NN-----SEIRYWSINNGSCAGVF-----KCQSGATQMRF 690 (725)
Q Consensus 624 WDl~~~~~~l~~~~-~h-~~~V~sl~fsP~g~~llaSgs-~D-----g~I~IwDl~t~~~v~~~-----~~~~~V~sv~f 690 (725)
||..+... .... .+ ...-.++++.++++ +++.|+ .+ ..+.+||..+.+....- ..........+
T Consensus 270 yd~~t~~W--~~~~~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~ 346 (656)
T 1k3i_A 270 YDSSSDSW--IPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY 346 (656)
T ss_dssp EEGGGTEE--EECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGG
T ss_pred ecCcCCce--eECCCCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccccee
Confidence 99987641 1111 11 11224456667777 666766 34 46999999987755431 00000000112
Q ss_pred ecCCCEEEEEEcC---------CeEEEEECCCCeEE
Q 004885 691 QPRLGRILAAAIE---------NYISILDVETQVCR 717 (725)
Q Consensus 691 spdg~~Lla~s~D---------g~V~IwDl~tg~~v 717 (725)
..++..++.++.+ ..|.+||..+....
T Consensus 347 ~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~ 382 (656)
T 1k3i_A 347 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV 382 (656)
T ss_dssp TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred ecCCceEEEECCCCcEEEecCccceeeeecCCccee
Confidence 2344444445433 45788888776533
No 304
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.54 E-value=0.06 Score=57.46 Aligned_cols=142 Identities=12% Similarity=0.158 Sum_probs=81.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE--EEEec---cCCCCeEEEEEcCC---CCEEEEEeC-C-----CeE
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLE---EHTQWITDVRFSPS---LSRLATSSA-D-----RTV 621 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~--i~~l~---~H~~~V~~IafsPd---~~~Lasgs~-D-----gtI 621 (725)
..-..++|.|+|+++++ ..++.|++++ +++. +..+. ........|+|+|+ +..|+++.. + ..|
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 34679999999985554 5679999998 3432 22121 12356889999998 556655543 2 578
Q ss_pred EEEECCCCC-----eeeEEEe---cCCCCeEEEEEccCCCeEEEEEeC-------------CCcEEEEECCCC-------
Q 004885 622 RVWDTENPD-----YSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNG------- 673 (725)
Q Consensus 622 rvWDl~~~~-----~~l~~~~---~h~~~V~sl~fsP~g~~llaSgs~-------------Dg~I~IwDl~t~------- 673 (725)
..|++.... ..+..+. +.......|+|.|+|. ++++.+. .+.|.-+|.+..
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 888876432 1111122 1111246899999996 6655432 145666665420
Q ss_pred -----eeEEEEe-cCCCeEEEEEecCCCEEEEEE
Q 004885 674 -----SCAGVFK-CQSGATQMRFQPRLGRILAAA 701 (725)
Q Consensus 674 -----~~v~~~~-~~~~V~sv~fspdg~~Lla~s 701 (725)
.....+. .......++|+|+.+.|+++.
T Consensus 187 ~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d 220 (352)
T 2ism_A 187 LGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSE 220 (352)
T ss_dssp TTCTTSCTTEEEECCSEECCCEECTTTCCEEEEE
T ss_pred cCCCCCCccEEEEcCCCcccEEEECCCCCEEEEE
Confidence 1111222 123467889999444454443
No 305
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.42 E-value=0.11 Score=53.30 Aligned_cols=142 Identities=12% Similarity=0.060 Sum_probs=77.7
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCCeee
Q 004885 566 DGKLLATGGHD-----KKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYSL 633 (725)
Q Consensus 566 dg~~LaSgs~D-----g~V~IWdl~~~~--~i~~l~~H~~~V~~IafsPd~~~Lasgs~D-----gtIrvWDl~~~~~~l 633 (725)
++++++.|+.+ ..+.+||..+.+ .+..+........++.+ ++.+++.|+.+ ..+.+||+.+..-
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W-- 187 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHW-- 187 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE--
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcE--
Confidence 67777777654 368889987654 23222222222222323 56666666654 4588899887652
Q ss_pred EEEec---CCCCeEEEEEccCCCeEEEEEeCC-----CcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEEcC
Q 004885 634 RTFTG---HSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIE 703 (725)
Q Consensus 634 ~~~~~---h~~~V~sl~fsP~g~~llaSgs~D-----g~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s~D 703 (725)
..+.. .......+.+ +..+++.|+.+ ..|.+||+.+.+....-.. .....+++.. ++..++.++.+
T Consensus 188 ~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~ 263 (301)
T 2vpj_A 188 TNVTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL-RGRLYAIAGYD 263 (301)
T ss_dssp EEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBC
T ss_pred EeCCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE-CCEEEEEcCcC
Confidence 22211 1111222332 34577777653 4689999998766543222 1111222222 45566666654
Q ss_pred -----CeEEEEECCCCe
Q 004885 704 -----NYISILDVETQV 715 (725)
Q Consensus 704 -----g~V~IwDl~tg~ 715 (725)
..|.+||+++.+
T Consensus 264 ~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 264 GNSLLSSIECYDPIIDS 280 (301)
T ss_dssp SSSBEEEEEEEETTTTE
T ss_pred CCcccccEEEEcCCCCe
Confidence 468999998863
No 306
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.40 E-value=0.074 Score=59.64 Aligned_cols=161 Identities=9% Similarity=0.041 Sum_probs=95.5
Q ss_pred eEEEEEcCC-CCEEEEEeCCCcEEEEECC-------CCeE-----------EEE-e-ccCCCCeEEEEEcCCCCEEEEEe
Q 004885 558 VESCHFSPD-GKLLATGGHDKKAVLWCTE-------SFTV-----------KST-L-EEHTQWITDVRFSPSLSRLATSS 616 (725)
Q Consensus 558 V~~i~fSpd-g~~LaSgs~Dg~V~IWdl~-------~~~~-----------i~~-l-~~H~~~V~~IafsPd~~~Lasgs 616 (725)
...++++|+ +.++++-..++.|..+|++ ++.. ... + .+.....+.|+|+|++++|+.+.
T Consensus 249 p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD 328 (496)
T 3kya_A 249 CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGV 328 (496)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEe
Confidence 457788994 5555666677889999987 4432 111 1 12234568999999999766554
Q ss_pred -CCCeEEEEECCCCCeee---EEEecC---C------------CCeE-EEEEc-------cCCCeEEEEEeCCCcEEEEE
Q 004885 617 -ADRTVRVWDTENPDYSL---RTFTGH---S------------TTVM-SLDFH-------PSKEDLLCSCDNNSEIRYWS 669 (725)
Q Consensus 617 -~DgtIrvWDl~~~~~~l---~~~~~h---~------------~~V~-sl~fs-------P~g~~llaSgs~Dg~I~IwD 669 (725)
....|+.+|.+.....+ .++.+. . .... .++.. +.+ .|+++-..+.+|+.++
T Consensus 329 ~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g-~lyVaD~~N~rIr~i~ 407 (496)
T 3kya_A 329 INNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEY-DFYFVDRLNFCVRKVT 407 (496)
T ss_dssp TTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCE-EEEEEEGGGTEEEEEC
T ss_pred CCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCC-eEEEEECCCCEEEEEe
Confidence 56788887654322111 233322 1 1233 34443 333 4666666778999999
Q ss_pred CCCCeeEEEEecC-------------------------CCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEe
Q 004885 670 INNGSCAGVFKCQ-------------------------SGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 670 l~t~~~v~~~~~~-------------------------~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~tg~~v~~l~ 721 (725)
.++. +.++-+. .....|+++++.+.|+++.. ...|+.++++...+++...
T Consensus 408 -~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~~~~ 483 (496)
T 3kya_A 408 -PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAGDE 483 (496)
T ss_dssp -TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC------
T ss_pred -CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccccCC
Confidence 4564 3333221 12678999997455555554 6789999998877776543
No 307
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=96.38 E-value=0.0031 Score=69.76 Aligned_cols=14 Identities=14% Similarity=0.418 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhhhh
Q 004885 52 LFEWWSVFWDIFIA 65 (725)
Q Consensus 52 L~eWw~~fwd~f~a 65 (725)
..++|.++.+.+..
T Consensus 336 ~~~~~~~~~~~~~~ 349 (449)
T 3iot_A 336 MSAFWYAVRTAVIN 349 (449)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34556666655543
No 308
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.32 E-value=0.11 Score=53.25 Aligned_cols=144 Identities=10% Similarity=0.045 Sum_probs=75.7
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEeCC-------CeEEEEECCCCCe
Q 004885 566 DGKLLATGGHDK-----KAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-------RTVRVWDTENPDY 631 (725)
Q Consensus 566 dg~~LaSgs~Dg-----~V~IWdl~~~~~i~~--l~~H~~~V~~IafsPd~~~Lasgs~D-------gtIrvWDl~~~~~ 631 (725)
++++++.|+.++ .+.+||+.+.+-... +........++.+ ++.+++.|+.+ ..+.+||+.+..-
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W 185 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEW 185 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence 677777887654 577888876543221 2111122222222 45566665542 3588899887642
Q ss_pred eeE-EEecCCCCeEEEEEccCCCeEEEEEeCC-----CcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEEcC
Q 004885 632 SLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIE 703 (725)
Q Consensus 632 ~l~-~~~~h~~~V~sl~fsP~g~~llaSgs~D-----g~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s~D 703 (725)
... .+.........+.+ + ..+++.|+.+ ..|.+||+.+.+....-.. ...-..++.. ++..++.|+.+
T Consensus 186 ~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~i~v~GG~~ 261 (302)
T 2xn4_A 186 TYIAEMSTRRSGAGVGVL--N-NLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV-NGLLYVVGGDD 261 (302)
T ss_dssp EEECCCSSCCBSCEEEEE--T-TEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBC
T ss_pred EECCCCccccccccEEEE--C-CEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE-CCEEEEECCcC
Confidence 111 11111111222222 3 4577777654 3699999998765543322 1111223222 44566666654
Q ss_pred -----CeEEEEECCCCe
Q 004885 704 -----NYISILDVETQV 715 (725)
Q Consensus 704 -----g~V~IwDl~tg~ 715 (725)
..|.+||+++.+
T Consensus 262 ~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 262 GSCNLASVEYYNPTTDK 278 (302)
T ss_dssp SSSBCCCEEEEETTTTE
T ss_pred CCcccccEEEEcCCCCe
Confidence 359999998874
No 309
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.28 E-value=0.31 Score=52.25 Aligned_cols=144 Identities=10% Similarity=0.030 Sum_probs=90.4
Q ss_pred CCeEEEEEcC--CCC-EEEEEeC---CCcEEEEECCCC--e--EEEEeccC-CCCeEEEEEcCCCCEEEEEeC-------
Q 004885 556 SKVESCHFSP--DGK-LLATGGH---DKKAVLWCTESF--T--VKSTLEEH-TQWITDVRFSPSLSRLATSSA------- 617 (725)
Q Consensus 556 ~~V~~i~fSp--dg~-~LaSgs~---Dg~V~IWdl~~~--~--~i~~l~~H-~~~V~~IafsPd~~~Lasgs~------- 617 (725)
.....|.+.+ ++. +|+++.. +.+|.||+++.. . .+..+.+. -...+++++.+++.+.++...
T Consensus 112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~ 191 (355)
T 3sre_A 112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYL 191 (355)
T ss_dssp CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHH
T ss_pred eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCccc
Confidence 3455666654 454 4555532 467888877542 2 23334332 245789999999987777541
Q ss_pred ----------CCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC-Cee--EEEEecCCC
Q 004885 618 ----------DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSC--AGVFKCQSG 684 (725)
Q Consensus 618 ----------DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t-~~~--v~~~~~~~~ 684 (725)
.+.|..+|. +. +..+...-...+.|+|+|+++.++++-+..+.|+.||+.. ++. ...+...+.
T Consensus 192 ~~~e~~~~~~~g~vyr~d~--~~--~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~ 267 (355)
T 3sre_A 192 KSWEMHLGLAWSFVTYYSP--ND--VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTL 267 (355)
T ss_dssp HHHHHHTTCCCEEEEEECT--TC--CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSE
T ss_pred ccchhhccCCccEEEEEEC--Ce--EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCC
Confidence 134444444 33 2333333356799999999998888887888999999863 332 234433566
Q ss_pred eEEEEEec-CCCEEEEEEcC
Q 004885 685 ATQMRFQP-RLGRILAAAIE 703 (725)
Q Consensus 685 V~sv~fsp-dg~~Lla~s~D 703 (725)
.-.+++++ +|..++++..+
T Consensus 268 PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 268 VDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEEEEECTTTCCEEEEEESC
T ss_pred CceEEEeCCCCcEEEEecCC
Confidence 78899999 58877766544
No 310
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.27 E-value=1.5 Score=50.42 Aligned_cols=157 Identities=6% Similarity=-0.046 Sum_probs=100.8
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCCee
Q 004885 556 SKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYS 632 (725)
Q Consensus 556 ~~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~--DgtIrvWDl~~~~~~ 632 (725)
.....+++...+. ++++-+..+.|.+.+++.......+...-....+|+++|...+|+.+.. ...|...+++... .
T Consensus 392 ~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~-~ 470 (619)
T 3s94_A 392 AHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSD-R 470 (619)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-C
T ss_pred CCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCc-c
Confidence 4577889987444 4455556788999998765433333333466889999997555655543 3567777776443 2
Q ss_pred eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEc-CCeEEEEE
Q 004885 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI-ENYISILD 710 (725)
Q Consensus 633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~-Dg~V~IwD 710 (725)
.......-.....|++++++..++++-...+.|..+++........+.. -.....|++..+ +|+.+.. .+.|...|
T Consensus 471 ~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~~--~ly~tD~~~~~I~~~~ 548 (619)
T 3s94_A 471 VVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGD--YVYWTDWQRRSIERVH 548 (619)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEETT--EEEEECTTSSCEEEEE
T ss_pred EEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCCcEEEEEECC--EEEEeecCCCeEEEEE
Confidence 2233333456889999998777777666678899999875433322222 233456666543 6666654 56788888
Q ss_pred CCCCe
Q 004885 711 VETQV 715 (725)
Q Consensus 711 l~tg~ 715 (725)
..+|.
T Consensus 549 k~~g~ 553 (619)
T 3s94_A 549 KRSAE 553 (619)
T ss_dssp SSSCC
T ss_pred cCCCc
Confidence 88873
No 311
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.27 E-value=0.4 Score=53.04 Aligned_cols=104 Identities=16% Similarity=0.196 Sum_probs=61.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE--EEecc------CCCCeEEEEEcCC---CCEEEEEeC-------
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEE------HTQWITDVRFSPS---LSRLATSSA------- 617 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i--~~l~~------H~~~V~~IafsPd---~~~Lasgs~------- 617 (725)
....+|+|.|+|+++++-...+.|++++..++... ..+.. ....+..|+|+|+ +.+|+.+..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 45679999999997776544457888876555432 22321 2356779999995 555555432
Q ss_pred ------CCeEEEEECCCCC----e--ee-EEEe-cCCCCeEEEEEccCCCeEEEEEe
Q 004885 618 ------DRTVRVWDTENPD----Y--SL-RTFT-GHSTTVMSLDFHPSKEDLLCSCD 660 (725)
Q Consensus 618 ------DgtIrvWDl~~~~----~--~l-~~~~-~h~~~V~sl~fsP~g~~llaSgs 660 (725)
...|..|++.... . .+ ..+. ........|+|.|+|. |+++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEEC
Confidence 1355556654321 0 11 1121 1123478999999997 555543
No 312
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.14 E-value=0.25 Score=52.78 Aligned_cols=148 Identities=11% Similarity=0.108 Sum_probs=84.0
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE--EEe----ccCCCCeEEEEEcCC---CCEEEEE---eC
Q 004885 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STL----EEHTQWITDVRFSPS---LSRLATS---SA 617 (725)
Q Consensus 550 ~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i--~~l----~~H~~~V~~IafsPd---~~~Lasg---s~ 617 (725)
.+...-..-..|+|.|||.++++--..|.|++++..+++.. ..+ .........|+|+|+ +.+|+.+ ..
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 33334455789999999997777655899999987655432 222 123456899999995 4455443 23
Q ss_pred CCeEEEEECCCC----------CeeeEEEe-cCCCCeEEEEEccCCCeEEEEEeC-------------CCcEEEEECCCC
Q 004885 618 DRTVRVWDTENP----------DYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNG 673 (725)
Q Consensus 618 DgtIrvWDl~~~----------~~~l~~~~-~h~~~V~sl~fsP~g~~llaSgs~-------------Dg~I~IwDl~t~ 673 (725)
+..|.-|.+... +..+..+. ........|.|.|+|. |+++.+. .|.|.-++....
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 456666666541 11111221 1112346799999987 5555431 244544555421
Q ss_pred e-------eEEEEe-cCCCeEEEEEecCCCEEE
Q 004885 674 S-------CAGVFK-CQSGATQMRFQPRLGRIL 698 (725)
Q Consensus 674 ~-------~v~~~~-~~~~V~sv~fspdg~~Ll 698 (725)
- -...+. +......++|+|+|..++
T Consensus 185 ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~ 217 (347)
T 3das_A 185 PAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFA 217 (347)
T ss_dssp BCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEE
T ss_pred ccCCCCCCCCeEEeeCCCCcceEEECCCCCEEE
Confidence 0 011222 234467899999855443
No 313
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.11 E-value=0.13 Score=54.97 Aligned_cols=143 Identities=12% Similarity=0.064 Sum_probs=81.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEec---cCCCCeEEEEEcCC---CCEEEEEeC----C----Ce
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLE---EHTQWITDVRFSPS---LSRLATSSA----D----RT 620 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~-~i~~l~---~H~~~V~~IafsPd---~~~Lasgs~----D----gt 620 (725)
..-..++|.|+|++ +++..++.|+++|. +++ .+..+. ........|+|+|+ +..|+++.. + ..
T Consensus 29 ~~P~~ia~~pdG~l-~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRY-LVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEE-EEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeE-EEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 45789999999984 44566799999973 444 222211 12356889999997 556655443 3 56
Q ss_pred EEEEECCCCC------eee-EEEec-CCCCeEEEEEccCCCeEEEEEeC-------------CCcEEEEECCCC------
Q 004885 621 VRVWDTENPD------YSL-RTFTG-HSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNG------ 673 (725)
Q Consensus 621 IrvWDl~~~~------~~l-~~~~~-h~~~V~sl~fsP~g~~llaSgs~-------------Dg~I~IwDl~t~------ 673 (725)
|..|+..... ..+ ..+.. .......|+|.|+|. |+++.+. .|.|.-+|....
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 7778776541 011 11221 111246799999997 5555332 245655665421
Q ss_pred ---eeEEEEecCCCeEEEEEecCCCEEEEEEc
Q 004885 674 ---SCAGVFKCQSGATQMRFQPRLGRILAAAI 702 (725)
Q Consensus 674 ---~~v~~~~~~~~V~sv~fspdg~~Lla~s~ 702 (725)
..+... .......|+|+|+.+.|+++..
T Consensus 186 f~~~~i~a~-G~rnp~Gla~d~~~g~l~v~d~ 216 (354)
T 3a9g_A 186 FPNSPIWSY-GHRNPQGIDWHRASGVMVATEH 216 (354)
T ss_dssp STTCCEEEE-CCSCCCEEEECTTTCCEEEEEC
T ss_pred CCCCcEEEE-ccCCcceEEEeCCCCCEEEEec
Confidence 112221 2345678999994444555543
No 314
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.99 E-value=0.18 Score=51.80 Aligned_cols=142 Identities=13% Similarity=0.096 Sum_probs=75.9
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEeC---------CCeEEEEECCC
Q 004885 566 DGKLLATGGHD------KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSA---------DRTVRVWDTEN 628 (725)
Q Consensus 566 dg~~LaSgs~D------g~V~IWdl~~~~~i~~--l~~H~~~V~~IafsPd~~~Lasgs~---------DgtIrvWDl~~ 628 (725)
++++++.|+.+ ..+.+||..+.+-... +........++.+ ++.+++.|+. -..+.+||+.+
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~ 178 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPAT 178 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCC
Confidence 67777888765 4688999877543221 1111111222222 4555566553 34588899987
Q ss_pred CCeeeEEEecC--CCCeEEEEEccCCCeEEEEEeCC-----CcEEEEECCCCeeEEEEec---CCCeEEEEEecCCCEEE
Q 004885 629 PDYSLRTFTGH--STTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRIL 698 (725)
Q Consensus 629 ~~~~l~~~~~h--~~~V~sl~fsP~g~~llaSgs~D-----g~I~IwDl~t~~~v~~~~~---~~~V~sv~fspdg~~Ll 698 (725)
.. ...+... ...-.+++.. + ..+++.|+.+ ..|.+||+.+.+....-.. ......+.+ ++..++
T Consensus 179 ~~--W~~~~~~p~~r~~~~~~~~-~-~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v 252 (306)
T 3ii7_A 179 ET--WTELCPMIEARKNHGLVFV-K-DKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYV 252 (306)
T ss_dssp TE--EEEECCCSSCCBSCEEEEE-T-TEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEE
T ss_pred Ce--EEECCCccchhhcceEEEE-C-CEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEE
Confidence 65 2222211 1111122222 3 4477676543 3589999988765433221 112222323 445666
Q ss_pred EEEcC-----CeEEEEECCCCe
Q 004885 699 AAAIE-----NYISILDVETQV 715 (725)
Q Consensus 699 a~s~D-----g~V~IwDl~tg~ 715 (725)
.++.+ ..|.+||+++.+
T Consensus 253 ~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 253 LAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EECBCSSSBCCEEEEEETTTTE
T ss_pred EeCcCCCeeeeeEEEEcCCCCe
Confidence 66643 579999998863
No 315
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.85 E-value=0.53 Score=49.98 Aligned_cols=105 Identities=14% Similarity=0.096 Sum_probs=57.7
Q ss_pred CCCeEEEEEcCC---CCEEEEEeC-C-----CcEEEEECCCCe-----EE-EEec---cCCCCeEEEEEcCCCCEEEEEe
Q 004885 555 TSKVESCHFSPD---GKLLATGGH-D-----KKAVLWCTESFT-----VK-STLE---EHTQWITDVRFSPSLSRLATSS 616 (725)
Q Consensus 555 ~~~V~~i~fSpd---g~~LaSgs~-D-----g~V~IWdl~~~~-----~i-~~l~---~H~~~V~~IafsPd~~~Lasgs 616 (725)
......|+|+|+ +..|+++.. + ..|..|+..... .+ ..+. +.......|+|.|++.++++.+
T Consensus 74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 346889999998 555554433 2 578888876431 11 1232 1112346899999997666543
Q ss_pred C-------------CCeEEEEECCCC------------CeeeEEEecCCCCeEEEEEccCCCeEEEEEe
Q 004885 617 A-------------DRTVRVWDTENP------------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (725)
Q Consensus 617 ~-------------DgtIrvWDl~~~------------~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs 660 (725)
. .+.|..+|.+.. ........++. ....++|+|+...++++-.
T Consensus 154 ~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~ 221 (352)
T 2ism_A 154 EVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEH 221 (352)
T ss_dssp CTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEE
T ss_pred CCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEc
Confidence 2 145666665430 00111222343 3677899994333665543
No 316
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.80 E-value=0.16 Score=54.18 Aligned_cols=144 Identities=13% Similarity=0.089 Sum_probs=81.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-------ccCCCCeEEEEEcCC---CCEEEEEeC--------C
Q 004885 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPS---LSRLATSSA--------D 618 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l-------~~H~~~V~~IafsPd---~~~Lasgs~--------D 618 (725)
.-..|+|.|+|++|+++...+.|++++.+ +.....+ .........|+|+|+ +.+|+.+.. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 46899999999934455578999999853 3321111 112345789999996 555555432 2
Q ss_pred CeEEEEECCCCCe---eeE-EEecC------CCCeEEEEEccCCCeEEEEEeC-------------CCcEEEEECCCCe-
Q 004885 619 RTVRVWDTENPDY---SLR-TFTGH------STTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNGS- 674 (725)
Q Consensus 619 gtIrvWDl~~~~~---~l~-~~~~h------~~~V~sl~fsP~g~~llaSgs~-------------Dg~I~IwDl~t~~- 674 (725)
..|..|++..... ... .+... ......|.|.|+|. |+++.+. .|.|.-+|.+..-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 3566666654310 111 11111 11235799999985 6655432 2457667765320
Q ss_pred -----------eEEEEe-cCCCeEEEEEecCCCEEEEEEc
Q 004885 675 -----------CAGVFK-CQSGATQMRFQPRLGRILAAAI 702 (725)
Q Consensus 675 -----------~v~~~~-~~~~V~sv~fspdg~~Lla~s~ 702 (725)
....+. .......++|+|..+.|+++..
T Consensus 177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~ 216 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEH 216 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEE
T ss_pred CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEec
Confidence 112222 2345789999995456666543
No 317
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.67 E-value=0.57 Score=47.75 Aligned_cols=145 Identities=8% Similarity=0.101 Sum_probs=77.3
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCe-----EEEEeccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCC
Q 004885 566 DGKLLATGGHD-----KKAVLWCTESFT-----VKSTLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPD 630 (725)
Q Consensus 566 dg~~LaSgs~D-----g~V~IWdl~~~~-----~i~~l~~H~~~V~~IafsPd~~~Lasgs~D-----gtIrvWDl~~~~ 630 (725)
++++++.|+.+ ..+.+||..+.+ .+..+.........+.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 56777777765 468999987644 22222221222222333 55666666543 368889988765
Q ss_pred eee-EEEecCCCCeEEEEEccCCCeEEEEEeCC-----CcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEEc
Q 004885 631 YSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAI 702 (725)
Q Consensus 631 ~~l-~~~~~h~~~V~sl~fsP~g~~llaSgs~D-----g~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s~ 702 (725)
-.. ............+.+ + ..+++.|+.+ ..|.+||+.+.+....-.. .....+++.. ++..++.|+.
T Consensus 140 W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~ 215 (301)
T 2vpj_A 140 WSMLGDMQTAREGAGLVVA--S-GVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL-NDHIYVVGGF 215 (301)
T ss_dssp EEEEEECSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCB
T ss_pred EEECCCCCCCcccceEEEE--C-CEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE-CCEEEEEeCC
Confidence 211 111111111222222 3 4477777644 4589999988766544222 1111222222 4455666655
Q ss_pred C-----CeEEEEECCCCeE
Q 004885 703 E-----NYISILDVETQVC 716 (725)
Q Consensus 703 D-----g~V~IwDl~tg~~ 716 (725)
+ ..|.+||+++.+-
T Consensus 216 ~~~~~~~~v~~yd~~~~~W 234 (301)
T 2vpj_A 216 DGTAHLSSVEAYNIRTDSW 234 (301)
T ss_dssp CSSSBCCCEEEEETTTTEE
T ss_pred CCCcccceEEEEeCCCCcE
Confidence 3 5699999988743
No 318
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.56 E-value=1.5 Score=46.32 Aligned_cols=201 Identities=8% Similarity=0.092 Sum_probs=115.4
Q ss_pred EEEeeCCCcEEEecCCCCCCCCCc---cccccccCCCceeeeEEEecCC----CCCeEEEEEcCCCCEEEEEeC------
Q 004885 509 VDDGSLDDNVESFLSPDDADPRDR---VGRSAEVGKGFTFTEFQLIPAS----TSKVESCHFSPDGKLLATGGH------ 575 (725)
Q Consensus 509 lasGs~D~~V~vw~s~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~H----~~~V~~i~fSpdg~~LaSgs~------ 575 (725)
+.+..+...|..|.+.+....... ....|+.+. .-.+++.+..| ...|..-+.+++.++++..+-
T Consensus 100 lks~~~~e~VvfWkWis~~~L~lVT~taVyHWs~~~--~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~ 177 (365)
T 2xzh_A 100 MKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEG--ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR 177 (365)
T ss_dssp EEEEECSSCEEEEEECSSSEEEEEESSEEEEEESST--TCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTE
T ss_pred hcceecCCccEEEEecCCCeEEEEcCCcEEEEcccC--CCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCc
Confidence 344445556666655555322111 112233322 11333334333 345777788889997765432
Q ss_pred -CCcEEEEECCCCeEEEEeccCCCCeEEEEEcCC--C-CEEEEEeC---CCeEEEEECCCC--C------eeeEEEecC-
Q 004885 576 -DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS--L-SRLATSSA---DRTVRVWDTENP--D------YSLRTFTGH- 639 (725)
Q Consensus 576 -Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd--~-~~Lasgs~---DgtIrvWDl~~~--~------~~l~~~~~h- 639 (725)
.|.+.+|.++.. .-..+++|......+.+.-+ . ..|+.+.. .+.++|-++... . ..+..+...
T Consensus 178 v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppe 256 (365)
T 2xzh_A 178 VVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE 256 (365)
T ss_dssp EEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTT
T ss_pred cceeEEEEeeccc-ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCcc
Confidence 367788888653 44577888766555444322 1 23333322 258899998554 1 112222221
Q ss_pred --CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004885 640 --STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVET 713 (725)
Q Consensus 640 --~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~t 713 (725)
.+.-.++..++.-. ++..-..-|.|++||++++.|+..-+. ...|...+-+....-+++....|.|.-..++.
T Consensus 257 a~~DFPVamqvs~kyg-viyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 257 AQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 332 (365)
T ss_dssp CTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECT
T ss_pred ccCCceEEEEecccCC-EEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECc
Confidence 34456677777766 555677789999999999999988775 55666656555555566666777766555544
No 319
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.56 E-value=0.36 Score=49.38 Aligned_cols=142 Identities=9% Similarity=0.080 Sum_probs=75.5
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEEE--EeccCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCCeee
Q 004885 566 DGKLLATGGHD-----KKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTENPDYSL 633 (725)
Q Consensus 566 dg~~LaSgs~D-----g~V~IWdl~~~~~i~--~l~~H~~~V~~IafsPd~~~Lasgs~Dg-----tIrvWDl~~~~~~l 633 (725)
++++++.|+.+ ..+.+||..+.+-.. .+.........+.+ ++.+++.|+.++ .+.+||+.+.. .
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~--W 136 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNE--W 136 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTE--E
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCe--E
Confidence 67777777755 358889987654322 12211122222223 566667776553 57788887754 2
Q ss_pred EEEec---CCCCeEEEEEccCCCeEEEEEeCC-------CcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEE
Q 004885 634 RTFTG---HSTTVMSLDFHPSKEDLLCSCDNN-------SEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAA 701 (725)
Q Consensus 634 ~~~~~---h~~~V~sl~fsP~g~~llaSgs~D-------g~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s 701 (725)
..+.. .......+.+ + ..+++.|+.+ ..+.+||+.+.+....-.. .....+++.. ++..++.|+
T Consensus 137 ~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG 212 (302)
T 2xn4_A 137 FHVAPMNTRRSSVGVGVV--G-GLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNLLYAVGG 212 (302)
T ss_dssp EEECCCSSCCBSCEEEEE--T-TEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred eecCCCCCcccCceEEEE--C-CEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE-CCEEEEECC
Confidence 22211 1111122222 3 3466666532 3588999988765543222 1112223332 445666666
Q ss_pred cC-----CeEEEEECCCCe
Q 004885 702 IE-----NYISILDVETQV 715 (725)
Q Consensus 702 ~D-----g~V~IwDl~tg~ 715 (725)
.+ +.|.+||+++.+
T Consensus 213 ~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 213 HDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp BSSSSBCCCEEEEETTTTE
T ss_pred CCCCcccceEEEEeCCCCC
Confidence 53 469999998864
No 320
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.53 E-value=0.35 Score=49.61 Aligned_cols=142 Identities=7% Similarity=0.050 Sum_probs=76.4
Q ss_pred CCCEEEEEeCC----CcEEEEECCCCeEEE--EeccCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEECCCCCeee
Q 004885 566 DGKLLATGGHD----KKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENPDYSL 633 (725)
Q Consensus 566 dg~~LaSgs~D----g~V~IWdl~~~~~i~--~l~~H~~~V~~IafsPd~~~Lasgs~D------gtIrvWDl~~~~~~l 633 (725)
++++++.|+.+ ..+.+||..+.+-.. .+.........+.+ ++.+++.|+.+ ..+.+||+.+..-
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W-- 130 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESW-- 130 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEE--
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCce--
Confidence 66777788765 578889987754322 22211222222333 56666777654 4588899887652
Q ss_pred EEEec---CCCCeEEEEEccCCCeEEEEEeC---------CCcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEE
Q 004885 634 RTFTG---HSTTVMSLDFHPSKEDLLCSCDN---------NSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILA 699 (725)
Q Consensus 634 ~~~~~---h~~~V~sl~fsP~g~~llaSgs~---------Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla 699 (725)
..+.. .......+.+ + ..+++.|+. -..+.+||+.+.+....-.. ...-.+++.. ++..++.
T Consensus 131 ~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~ 206 (306)
T 3ii7_A 131 HTKPSMLTQRCSHGMVEA--N-GLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAV 206 (306)
T ss_dssp EEECCCSSCCBSCEEEEE--T-TEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEE
T ss_pred EeCCCCcCCcceeEEEEE--C-CEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEE
Confidence 22211 1111122222 3 346666653 34588999998765443222 1112233333 4455555
Q ss_pred EEcC-----CeEEEEECCCCe
Q 004885 700 AAIE-----NYISILDVETQV 715 (725)
Q Consensus 700 ~s~D-----g~V~IwDl~tg~ 715 (725)
|+.+ ..|.+||+.+.+
T Consensus 207 GG~~~~~~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 207 GGQNGLGGLDNVEYYDIKLNE 227 (306)
T ss_dssp CCEETTEEBCCEEEEETTTTE
T ss_pred eCCCCCCCCceEEEeeCCCCc
Confidence 5543 468999998764
No 321
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.45 E-value=0.78 Score=48.80 Aligned_cols=155 Identities=12% Similarity=0.060 Sum_probs=81.5
Q ss_pred CCeEEEEEcCC---CCEEEEEeC----C----CcEEEEECCCC-------eEE-EEecc-CCCCeEEEEEcCCCCEEEEE
Q 004885 556 SKVESCHFSPD---GKLLATGGH----D----KKAVLWCTESF-------TVK-STLEE-HTQWITDVRFSPSLSRLATS 615 (725)
Q Consensus 556 ~~V~~i~fSpd---g~~LaSgs~----D----g~V~IWdl~~~-------~~i-~~l~~-H~~~V~~IafsPd~~~Lasg 615 (725)
.....|+|+|+ +..|+++.. + ..|..|+.... +.+ ..+.. .......|+|.|++.++++.
T Consensus 73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~ 152 (354)
T 3a9g_A 73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT 152 (354)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence 45889999997 455544433 3 56777876543 111 11221 11234679999999866664
Q ss_pred eC-------------CCeEEEEECCCC--------CeeeEEEecCCCCeEEEEEcc-CCCeEEEEEeCCC---cEEEEEC
Q 004885 616 SA-------------DRTVRVWDTENP--------DYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDNNS---EIRYWSI 670 (725)
Q Consensus 616 s~-------------DgtIrvWDl~~~--------~~~l~~~~~h~~~V~sl~fsP-~g~~llaSgs~Dg---~I~IwDl 670 (725)
+. .+.|..++.+.. . ......++.. ...++|+| ++. ++++-.... .|.+..-
T Consensus 153 G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~-~~i~a~G~rn-p~Gla~d~~~g~-l~v~d~g~~~~dei~~i~~ 229 (354)
T 3a9g_A 153 GDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPN-SPIWSYGHRN-PQGIDWHRASGV-MVATEHGPVGHDEVNIILK 229 (354)
T ss_dssp CCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTT-CCEEEECCSC-CCEEEECTTTCC-EEEEECCSSSCCEEEEECT
T ss_pred CCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCC-CcEEEEccCC-cceEEEeCCCCC-EEEEecCCCCCcEEEEecC
Confidence 32 245655555432 1 1122234443 56899999 555 665543221 2443321
Q ss_pred CC--------C--------eeEEEE-ecCCCeEEEEEe-------cCCCEEEEEEcCCeEEEEECCC
Q 004885 671 NN--------G--------SCAGVF-KCQSGATQMRFQ-------PRLGRILAAAIENYISILDVET 713 (725)
Q Consensus 671 ~t--------~--------~~v~~~-~~~~~V~sv~fs-------pdg~~Lla~s~Dg~V~IwDl~t 713 (725)
-. + .++..+ ..+..+..++|. .+|..+++.-..+.|..++++.
T Consensus 230 G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~ 296 (354)
T 3a9g_A 230 GGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD 296 (354)
T ss_dssp TCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred CCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence 10 0 122233 124457778873 4544444444456788888764
No 322
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.19 E-value=0.36 Score=49.77 Aligned_cols=142 Identities=11% Similarity=0.121 Sum_probs=76.3
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEEE--EeccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCCeee
Q 004885 566 DGKLLATGGHD-----KKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYSL 633 (725)
Q Consensus 566 dg~~LaSgs~D-----g~V~IWdl~~~~~i~--~l~~H~~~V~~IafsPd~~~Lasgs~D-----gtIrvWDl~~~~~~l 633 (725)
++++++.|+.+ ..+.+||..+.+-.. .+........++.+ ++.+++.|+.+ ..+.+||+.+..-
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-- 196 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEW-- 196 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE--
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeE--
Confidence 67777777644 368889987654222 12111122223333 55666666654 4588899877541
Q ss_pred EEEec---CCCCeEEEEEccCCCeEEEEEeCC-----CcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEEcC
Q 004885 634 RTFTG---HSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIE 703 (725)
Q Consensus 634 ~~~~~---h~~~V~sl~fsP~g~~llaSgs~D-----g~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s~D 703 (725)
..+.. .......+.+ + ..+++.|+.+ ..|.+||+.+.+....-.. .....+++.. ++..++.|+.+
T Consensus 197 ~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~ 272 (308)
T 1zgk_A 197 RMITAMNTIRSGAGVCVL--H-NCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH-QGRIYVLGGYD 272 (308)
T ss_dssp EECCCCSSCCBSCEEEEE--T-TEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBC
T ss_pred eeCCCCCCccccceEEEE--C-CEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE-CCEEEEEcCcC
Confidence 22111 1111222333 3 4577777654 4699999998765543221 1112233333 44566666643
Q ss_pred -----CeEEEEECCCCe
Q 004885 704 -----NYISILDVETQV 715 (725)
Q Consensus 704 -----g~V~IwDl~tg~ 715 (725)
..|.+||+++.+
T Consensus 273 ~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 273 GHTFLDSVECYDPDTDT 289 (308)
T ss_dssp SSCBCCEEEEEETTTTE
T ss_pred CCcccceEEEEcCCCCE
Confidence 568999998874
No 323
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.14 E-value=2.7 Score=46.17 Aligned_cols=156 Identities=10% Similarity=0.156 Sum_probs=100.4
Q ss_pred CCeEEEEEcCCCCEEEEEe-------CCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCC---CEEEEEeC---CCeEE
Q 004885 556 SKVESCHFSPDGKLLATGG-------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---SRLATSSA---DRTVR 622 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs-------~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~---~~Lasgs~---DgtIr 622 (725)
..|..-..+++.++++..+ -.|.+-+|.++.. .-..+++|......+.+.-+. ..++.+.. .+.++
T Consensus 151 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLh 229 (494)
T 1bpo_A 151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLH 229 (494)
T ss_dssp CEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEE
T ss_pred ceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEE
Confidence 4577778888999876443 2467788988653 345778887766655554321 23444433 37899
Q ss_pred EEECCCC--C------eeeEEEec---CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEE
Q 004885 623 VWDTENP--D------YSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRF 690 (725)
Q Consensus 623 vWDl~~~--~------~~l~~~~~---h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~f 690 (725)
|-++... . ..+..+.. -.+.-.++..++.-. ++..-..-|.|++||+.++.|+..-+. ...|...+-
T Consensus 230 i~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg-viyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~ 308 (494)
T 1bpo_A 230 IIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAP 308 (494)
T ss_dssp EEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred EEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC-EEEEEecCceEEEEecccceeeeeecccCCceEEecc
Confidence 9998654 1 11111111 124456778888766 555677789999999999999988775 556666666
Q ss_pred ecCCCEEEEEEcCCeEEEEECCC
Q 004885 691 QPRLGRILAAAIENYISILDVET 713 (725)
Q Consensus 691 spdg~~Lla~s~Dg~V~IwDl~t 713 (725)
....+-++.....|.|.-..+..
T Consensus 309 ~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 309 HEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp ETTTTEEEEEETTCEEEEEEECT
T ss_pred cCCCCcEEEEccCceEEEEEEcc
Confidence 66556666666777766555543
No 324
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.04 E-value=0.35 Score=50.55 Aligned_cols=141 Identities=7% Similarity=0.013 Sum_probs=86.8
Q ss_pred EEEEcCCCCEEEEEeCC--------------CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe--C--CCeE
Q 004885 560 SCHFSPDGKLLATGGHD--------------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS--A--DRTV 621 (725)
Q Consensus 560 ~i~fSpdg~~LaSgs~D--------------g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs--~--DgtI 621 (725)
+--+++++++|+-+... ..|+..+++..+... +.. .. +..|++++.+|+-.. . +..|
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~I 131 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDP--DP--CIYASLIGNYIYYLHYDTQTATSL 131 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EEC--SC--EEEEEEETTEEEEEEESSSSCEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eec--CC--ccEEEEeCCEEEEEeecCCCCceE
Confidence 34457788888766543 367777777654332 221 22 236777888887665 2 3455
Q ss_pred EEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEE
Q 004885 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 701 (725)
Q Consensus 622 rvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s 701 (725)
..-+++... ...+..+.. ..|+++++.++.+......|.+.++..+.....+. +... ..++|++++|+...
T Consensus 132 y~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~ 202 (302)
T 3s25_A 132 YRIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMD 202 (302)
T ss_dssp EEEETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEE
T ss_pred EEEECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEE
Confidence 556666433 444444432 45678888888776556789999998776554443 2333 34668889888776
Q ss_pred cC--CeEEEEECCCC
Q 004885 702 IE--NYISILDVETQ 714 (725)
Q Consensus 702 ~D--g~V~IwDl~tg 714 (725)
.+ ..|..-++..+
T Consensus 203 ~~~~~~I~~~~ldG~ 217 (302)
T 3s25_A 203 VNRDNAIVHVNINNP 217 (302)
T ss_dssp GGGTTEEEEECSSSC
T ss_pred cCCCcEEEEEECCCC
Confidence 53 35666666654
No 325
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.89 E-value=1 Score=45.09 Aligned_cols=141 Identities=12% Similarity=0.011 Sum_probs=78.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE------EEEe--ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004885 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTV------KSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~------i~~l--~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~ 628 (725)
.+.+++|+|+|.+.++ .+|.++-.+..+... -..+ .+-. ...++.|+|++.+.++ .||.|.-|+-.+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 5779999999997776 677777766544111 1111 0111 1578999999988777 469888777633
Q ss_pred CCee-----eEEEe-cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee------EEEEe-cC-CCeEEEEEecCC
Q 004885 629 PDYS-----LRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC------AGVFK-CQ-SGATQMRFQPRL 694 (725)
Q Consensus 629 ~~~~-----l~~~~-~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~------v~~~~-~~-~~V~sv~fspdg 694 (725)
.... -..+. +--..+..|.|.|+|. |++.. |+.++-+...++.. ...+. .. ....-+.|++++
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G 193 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG 193 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCce-EEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence 2200 01111 1113579999999997 55444 77764433332211 11111 11 123446688886
Q ss_pred CEEEEEEcCCeEE
Q 004885 695 GRILAAAIENYIS 707 (725)
Q Consensus 695 ~~Lla~s~Dg~V~ 707 (725)
..+++. ++.|.
T Consensus 194 ~l~~v~--~g~~Y 204 (236)
T 1tl2_A 194 TLFGVQ--GGKFY 204 (236)
T ss_dssp CEEEEE--TTEEE
T ss_pred cEEEEe--CCeEE
Confidence 544443 66443
No 326
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.75 E-value=0.4 Score=50.34 Aligned_cols=57 Identities=9% Similarity=-0.002 Sum_probs=29.8
Q ss_pred cEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcC------CeEEEEECCCCeEEEEE
Q 004885 664 EIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE------NYISILDVETQVCRLKL 720 (725)
Q Consensus 664 ~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~D------g~V~IwDl~tg~~v~~l 720 (725)
.+.+||+.+.+....-.. .......++..++..++.|+.+ ..|.++++++++.+...
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred eEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 578999987655443222 1111122233455777778764 24777799888655543
No 327
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.70 E-value=0.41 Score=49.41 Aligned_cols=143 Identities=10% Similarity=0.034 Sum_probs=75.3
Q ss_pred CCCEEEEEeCC--------CcEEEEECCCCeEE--EEeccCCCCeEEEEEcCCCCEEEEEeC-C-----CeEEEEECCCC
Q 004885 566 DGKLLATGGHD--------KKAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRLATSSA-D-----RTVRVWDTENP 629 (725)
Q Consensus 566 dg~~LaSgs~D--------g~V~IWdl~~~~~i--~~l~~H~~~V~~IafsPd~~~Lasgs~-D-----gtIrvWDl~~~ 629 (725)
++++++.|+.+ ..+.+||..+.+-. ..+........++. -++++++.|+. + ..+.+||+.+.
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~ 175 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKF 175 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence 56777777643 45889998775422 11211111122222 24556666665 2 36888998876
Q ss_pred CeeeEEEec---CCCCeEEEEEccCCCeEEEEEeCCC-----cEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEE
Q 004885 630 DYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILA 699 (725)
Q Consensus 630 ~~~l~~~~~---h~~~V~sl~fsP~g~~llaSgs~Dg-----~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla 699 (725)
. -..+.. ......++.+ + ..+++.|+.++ .+.+||+.+.+....-.. .....+++.. ++..++.
T Consensus 176 ~--W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~ 249 (315)
T 4asc_A 176 E--WKELAPMQTARSLFGATVH--D-GRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL-VGTLYAI 249 (315)
T ss_dssp E--EEECCCCSSCCBSCEEEEE--T-TEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEE
T ss_pred e--EEECCCCCCchhceEEEEE--C-CEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE-CCEEEEE
Confidence 4 122211 1111222222 3 34777776544 588999988765544322 1112223333 4466666
Q ss_pred EEcC--------------CeEEEEECCCCeE
Q 004885 700 AAIE--------------NYISILDVETQVC 716 (725)
Q Consensus 700 ~s~D--------------g~V~IwDl~tg~~ 716 (725)
|+.+ ..|.+||+++.+-
T Consensus 250 GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W 280 (315)
T 4asc_A 250 GGFATLETESGELVPTELNDIWRYNEEEKKW 280 (315)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEETTTTEE
T ss_pred CCccccCcCCccccccccCcEEEecCCCChh
Confidence 6653 3478999988743
No 328
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=94.60 E-value=0.014 Score=64.46 Aligned_cols=7 Identities=43% Similarity=0.952 Sum_probs=2.6
Q ss_pred HHHHHhh
Q 004885 57 SVFWDIF 63 (725)
Q Consensus 57 ~~fwd~f 63 (725)
..+|+++
T Consensus 337 ~~~~~~~ 343 (449)
T 3iot_A 337 SAFWYAV 343 (449)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 329
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=94.35 E-value=0.82 Score=46.99 Aligned_cols=144 Identities=13% Similarity=0.089 Sum_probs=74.8
Q ss_pred CCCEEEEEeC----C-----CcEEEEECCCCeEEE--EeccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCC
Q 004885 566 DGKLLATGGH----D-----KKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENP 629 (725)
Q Consensus 566 dg~~LaSgs~----D-----g~V~IWdl~~~~~i~--~l~~H~~~V~~IafsPd~~~Lasgs~D-----gtIrvWDl~~~ 629 (725)
++++++.|+. + ..+.+||..+.+-.. .+.........+.+ ++.+++.|+.+ ..+.+||+.+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 5677777765 2 468889987654221 11111122222333 55666666543 35788898775
Q ss_pred Ceee-EEEecCCCCeEEEEEccCCCeEEEEEeCC-----CcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEE
Q 004885 630 DYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAA 701 (725)
Q Consensus 630 ~~~l-~~~~~h~~~V~sl~fsP~g~~llaSgs~D-----g~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s 701 (725)
.-.. ..+.........+.+ + ..+++.|+.+ ..+.+||+.+.+....-.. .....+++.. ++..++.|+
T Consensus 148 ~W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG 223 (308)
T 1zgk_A 148 EWHLVAPMLTRRIGVGVAVL--N-RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGG 223 (308)
T ss_dssp EEEECCCCSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred eEeECCCCCccccceEEEEE--C-CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeC
Confidence 4111 111111111222233 3 4577777644 4589999988765433221 1112223333 445566665
Q ss_pred cC-----CeEEEEECCCCe
Q 004885 702 IE-----NYISILDVETQV 715 (725)
Q Consensus 702 ~D-----g~V~IwDl~tg~ 715 (725)
.+ ..|.+||+++.+
T Consensus 224 ~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 224 YDGQDQLNSVERYDVETET 242 (308)
T ss_dssp BCSSSBCCCEEEEETTTTE
T ss_pred CCCCCccceEEEEeCCCCc
Confidence 54 569999998864
No 330
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.22 E-value=1.7 Score=44.59 Aligned_cols=148 Identities=7% Similarity=-0.033 Sum_probs=75.2
Q ss_pred EEEcCCCCEEEEEeC----C-------CcEEEEECCCCeEEE--EeccCCCCeEEEEEcCCCCEEEEEeCC--------C
Q 004885 561 CHFSPDGKLLATGGH----D-------KKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD--------R 619 (725)
Q Consensus 561 i~fSpdg~~LaSgs~----D-------g~V~IWdl~~~~~i~--~l~~H~~~V~~IafsPd~~~Lasgs~D--------g 619 (725)
.....++++++.|+. + ..+.+||..+.+-.. .+.........+.+ ++..++.|+.+ .
T Consensus 40 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~ 117 (315)
T 4asc_A 40 SLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLD 117 (315)
T ss_dssp EEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCC
T ss_pred EEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccc
Confidence 333457888888874 1 127788887654321 11111111112222 45556666532 3
Q ss_pred eEEEEECCCCCeeeEEEec--CCCCeEEEEEccCCCeEEEEEeC-C-----CcEEEEECCCCeeEEEEec--CCCeEEEE
Q 004885 620 TVRVWDTENPDYSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDN-N-----SEIRYWSINNGSCAGVFKC--QSGATQMR 689 (725)
Q Consensus 620 tIrvWDl~~~~~~l~~~~~--h~~~V~sl~fsP~g~~llaSgs~-D-----g~I~IwDl~t~~~v~~~~~--~~~V~sv~ 689 (725)
.+.+||+.+.. ...+.. ....-.+++. -+ ..+++.|+. + ..+.+||+.+.+....-.. .....+++
T Consensus 118 ~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~ 193 (315)
T 4asc_A 118 SVMCYDRLSFK--WGESDPLPYVVYGHTVLS-HM-DLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT 193 (315)
T ss_dssp CEEEEETTTTE--EEECCCCSSCCBSCEEEE-ET-TEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE
T ss_pred eEEEECCCCCc--EeECCCCCCcccceeEEE-EC-CEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEE
Confidence 58889988754 122111 1111112222 23 347777765 2 3689999988765433221 11122222
Q ss_pred EecCCCEEEEEEcCC-----eEEEEECCCCe
Q 004885 690 FQPRLGRILAAAIEN-----YISILDVETQV 715 (725)
Q Consensus 690 fspdg~~Lla~s~Dg-----~V~IwDl~tg~ 715 (725)
.. ++..++.|+.++ .|.+||+++.+
T Consensus 194 ~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 194 VH-DGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp EE-TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred EE-CCEEEEEeccCCCCccceEEEEECCCCe
Confidence 22 456666776643 58999998874
No 331
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.13 E-value=0.51 Score=58.76 Aligned_cols=159 Identities=14% Similarity=0.228 Sum_probs=102.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeEEEEeccC----CCCeEEEEEcCCCCEEEEEe-------CCCeEEE
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEH----TQWITDVRFSPSLSRLATSS-------ADRTVRV 623 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~-~~~i~~l~~H----~~~V~~IafsPd~~~Lasgs-------~DgtIrv 623 (725)
..|..-.|-.+. .|+..+ +..|+.|++.. ..++..|..| ...|..-..+++.++++..+ -.|.+-+
T Consensus 106 e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQL 183 (1630)
T 1xi4_A 106 DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL 183 (1630)
T ss_pred CCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeee
Confidence 457777886444 444443 56899999974 4555556555 34567777788888876543 2578889
Q ss_pred EECCCCCeeeEEEecCCCCeEEEEEc--cCCCeEEEEEeC---CCcEEEEECCCC---ee------EEEEe-c---CCCe
Q 004885 624 WDTENPDYSLRTFTGHSTTVMSLDFH--PSKEDLLCSCDN---NSEIRYWSINNG---SC------AGVFK-C---QSGA 685 (725)
Q Consensus 624 WDl~~~~~~l~~~~~h~~~V~sl~fs--P~g~~llaSgs~---Dg~I~IwDl~t~---~~------v~~~~-~---~~~V 685 (725)
|.++.+. ...+.||.+.-..+... +....++|.+.. .+.++|.++... .. +..+. . ..-.
T Consensus 184 yS~er~~--sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfp 261 (1630)
T 1xi4_A 184 YSVDRKV--SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP 261 (1630)
T ss_pred eeccccc--chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcc
Confidence 9988654 46666776544433332 222335554432 368999998542 11 11111 1 2335
Q ss_pred EEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE
Q 004885 686 TQMRFQPRLGRILAAAIENYISILDVETQVCRL 718 (725)
Q Consensus 686 ~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~ 718 (725)
.++..++..+.++..+.-|.|++||++||.|+.
T Consensus 262 v~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 262 VAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred eEEEeccccCEEEEEecCceEEEEecccchhhh
Confidence 677888888888889999999999999998775
No 332
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.08 E-value=7.2 Score=41.39 Aligned_cols=151 Identities=15% Similarity=0.113 Sum_probs=80.5
Q ss_pred ccccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEe-
Q 004885 473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI- 551 (725)
Q Consensus 473 ~l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l- 551 (725)
.....+-..-..+.|.|++. ++++-...+.|+++...++. ...+..+
T Consensus 25 ~~va~gL~~P~~ia~~pdG~---------------llVter~~G~I~~v~~~~g~-----------------~~~v~~~~ 72 (347)
T 3das_A 25 RTVATGLNSPWGLAPLPGGD---------------LLVSSRDEATITRVDAKTGR-----------------KTELGEVP 72 (347)
T ss_dssp EEEECCCSSEEEEEECTTSC---------------EEEEETTTCEEEEECTTTCC-----------------EEEEEECT
T ss_pred EEeecCCCCceEEEEcCCCc---------------EEEEEecCCEEEEEECCCCc-----------------EeeecccC
Confidence 34445555667888888875 55554447888777321110 0111111
Q ss_pred ---cCCCCCeEEEEEcCC---CCEEEEE---eCCCcEEEEECCC----------CeEEE-Eec-cCCCCeEEEEEcCCCC
Q 004885 552 ---PASTSKVESCHFSPD---GKLLATG---GHDKKAVLWCTES----------FTVKS-TLE-EHTQWITDVRFSPSLS 610 (725)
Q Consensus 552 ---~~H~~~V~~i~fSpd---g~~LaSg---s~Dg~V~IWdl~~----------~~~i~-~l~-~H~~~V~~IafsPd~~ 610 (725)
.........|+|+|+ +.+|+++ ..+..|.-|.+.. .+.+. .+. ........|+|.||+.
T Consensus 73 ~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~ 152 (347)
T 3das_A 73 GVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM 152 (347)
T ss_dssp TCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC
T ss_pred ceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC
Confidence 123456889999995 3444432 2345666666543 12221 222 1112346799999998
Q ss_pred EEEEEeC-------------CCeEEEEECCCC--------CeeeEEEecCCCCeEEEEEccCCCeEEEE
Q 004885 611 RLATSSA-------------DRTVRVWDTENP--------DYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (725)
Q Consensus 611 ~Lasgs~-------------DgtIrvWDl~~~--------~~~l~~~~~h~~~V~sl~fsP~g~~llaS 658 (725)
++++.+. .+.|.-.+.+.. . ......+|.. ...++|+|+|. ++++
T Consensus 153 Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~-~~i~a~G~RN-p~Gla~dp~G~-L~~~ 218 (347)
T 3das_A 153 LYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPG-SPVYSYGHRN-VQGLAWDDKQR-LFAS 218 (347)
T ss_dssp EEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTT-CCEEEBCCSB-CCEEEECTTCC-EEEE
T ss_pred EEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCC-CeEEeeCCCC-cceEEECCCCC-EEEE
Confidence 7777542 244444455432 1 1122335543 56899999876 5543
No 333
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.00 E-value=1.1 Score=50.52 Aligned_cols=82 Identities=13% Similarity=0.165 Sum_probs=60.9
Q ss_pred CCeEEEEEccCCCeEEEEEeCCCcEEEEECCC------Ce-------eEEEEecCCCeEEEEEecCCCEEEEEE-cCCeE
Q 004885 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN------GS-------CAGVFKCQSGATQMRFQPRLGRILAAA-IENYI 706 (725)
Q Consensus 641 ~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t------~~-------~v~~~~~~~~V~sv~fspdg~~Lla~s-~Dg~V 706 (725)
.....+.++|+|+++++++-.+.+|.|+|++. .+ .+...+...+....+|+++| ..++.- -|..|
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTtlfidSqv 401 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRG-NAYTTLFIDSQV 401 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTTEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCC-ceEeeeeecceE
Confidence 44577899999999998888899999999973 11 13334446778999999997 544444 59999
Q ss_pred EEEECCCC----------eEEEEEeCC
Q 004885 707 SILDVETQ----------VCRLKLQVS 723 (725)
Q Consensus 707 ~IwDl~tg----------~~v~~l~GH 723 (725)
..|++... .++.++.-|
T Consensus 402 vkWni~~a~~~~~g~~~~~v~~k~dv~ 428 (638)
T 3sbq_A 402 VKWNMEEAVRAYKGEKVNYIKQKLDVH 428 (638)
T ss_dssp EEEEHHHHHHHHTTCCCCCEEEEEECS
T ss_pred EEEeccHHHHHhcCccCCeeeeccccc
Confidence 99998763 566666544
No 334
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=93.85 E-value=1.1 Score=46.14 Aligned_cols=144 Identities=6% Similarity=0.044 Sum_probs=73.6
Q ss_pred CCCEEEEEeCC-------CcEEEEECCCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEeC------CCeEEEEECCCCC
Q 004885 566 DGKLLATGGHD-------KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSA------DRTVRVWDTENPD 630 (725)
Q Consensus 566 dg~~LaSgs~D-------g~V~IWdl~~~~~i~~--l~~H~~~V~~IafsPd~~~Lasgs~------DgtIrvWDl~~~~ 630 (725)
++++++.|+.+ ..+.+||..+.+-... +........++. .++.+++.|+. -..+.+||+.+..
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 186 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD 186 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence 67777777764 2578888876543221 111111111222 25566666653 2358899998765
Q ss_pred eeeEEEec--C-CCCeEEEEEccCCCeEEEEEeCC-----CcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEE
Q 004885 631 YSLRTFTG--H-STTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAA 700 (725)
Q Consensus 631 ~~l~~~~~--h-~~~V~sl~fsP~g~~llaSgs~D-----g~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~ 700 (725)
- ..+.. . .....++.+ + ..+++.|+.+ ..|.+||+.+.+....-.. .....+++.. ++..++.|
T Consensus 187 W--~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~G 260 (318)
T 2woz_A 187 W--KDLAPMKTPRSMFGVAIH--K-GKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL-AGSLYAIG 260 (318)
T ss_dssp E--EEECCCSSCCBSCEEEEE--T-TEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE-TTEEEEEC
T ss_pred E--EECCCCCCCcccceEEEE--C-CEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE-CCEEEEEC
Confidence 2 22211 1 111122222 3 3477676543 2577899988765433221 1111223322 44556666
Q ss_pred EcC--------------CeEEEEECCCCeEE
Q 004885 701 AIE--------------NYISILDVETQVCR 717 (725)
Q Consensus 701 s~D--------------g~V~IwDl~tg~~v 717 (725)
+.+ ..|.+||+++.+-.
T Consensus 261 G~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 291 (318)
T 2woz_A 261 GFAMIQLESKEFAPTEVNDIWKYEDDKKEWA 291 (318)
T ss_dssp CBCCBC----CCBCCBCCCEEEEETTTTEEE
T ss_pred CeeccCCCCceeccceeeeEEEEeCCCCEeh
Confidence 543 46889999987543
No 335
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=93.76 E-value=2.4 Score=43.49 Aligned_cols=146 Identities=8% Similarity=0.069 Sum_probs=73.5
Q ss_pred EcCCCCEEEEEeC----CC-------cEEEEECCCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEeCC-------CeEE
Q 004885 563 FSPDGKLLATGGH----DK-------KAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-------RTVR 622 (725)
Q Consensus 563 fSpdg~~LaSgs~----Dg-------~V~IWdl~~~~~i~~--l~~H~~~V~~IafsPd~~~Lasgs~D-------gtIr 622 (725)
...++++++.|+. ++ .+.+||..+.+-... +.........+.+ ++.+++.|+.+ ..+.
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEE
Confidence 3457788888873 12 177888776543221 1111111222222 55666667653 2577
Q ss_pred EEECCCCCeeeEEEecCCCC--eEEEEEccCCCeEEEEEeC------CCcEEEEECCCCeeEEEEec--CCCeEEEEEec
Q 004885 623 VWDTENPDYSLRTFTGHSTT--VMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKC--QSGATQMRFQP 692 (725)
Q Consensus 623 vWDl~~~~~~l~~~~~h~~~--V~sl~fsP~g~~llaSgs~------Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fsp 692 (725)
+||+.+.. ...+...... -.+++. .+ ..+++.|+. -..+.+||+.+.+....-.. .....+++..
T Consensus 131 ~yd~~~~~--W~~~~~~p~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~- 205 (318)
T 2woz_A 131 CYDPVAAK--WSEVKNLPIKVYGHNVIS-HN-GMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH- 205 (318)
T ss_dssp EEETTTTE--EEEECCCSSCEESCEEEE-ET-TEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-
T ss_pred EEeCCCCC--EeECCCCCCcccccEEEE-EC-CEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE-
Confidence 88887654 2222111111 011222 23 346666653 23599999998765543222 1112233333
Q ss_pred CCCEEEEEEcC-----CeEEEEECCCCe
Q 004885 693 RLGRILAAAIE-----NYISILDVETQV 715 (725)
Q Consensus 693 dg~~Lla~s~D-----g~V~IwDl~tg~ 715 (725)
++..++.|+.+ ..|.+||+++.+
T Consensus 206 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 206 KGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 44566666543 457899988764
No 336
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.58 E-value=2.1 Score=49.94 Aligned_cols=149 Identities=12% Similarity=0.175 Sum_probs=82.7
Q ss_pred CCCEEEEEeCCC------cEEEEECCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCC--eEEEEECCCCCeeeEE
Q 004885 566 DGKLLATGGHDK------KAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRT 635 (725)
Q Consensus 566 dg~~LaSgs~Dg------~V~IWdl~~~~--~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dg--tIrvWDl~~~~~~l~~ 635 (725)
++++++.|+.++ .+.+||..+.+ .+..+...... .+++...++.+++.|+.++ .+.+||+.+..- ..
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W--~~ 527 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIF--KD 527 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEE--EE
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCce--EE
Confidence 677778877543 57888887743 22222211111 2233323777888877654 689999987652 22
Q ss_pred Eec------CCCCeEEEEEccCCCeEEEEEeC--C-----CcEEEEECCCCe------eEEEEe--c-CCCeEEEEEecC
Q 004885 636 FTG------HSTTVMSLDFHPSKEDLLCSCDN--N-----SEIRYWSINNGS------CAGVFK--C-QSGATQMRFQPR 693 (725)
Q Consensus 636 ~~~------h~~~V~sl~fsP~g~~llaSgs~--D-----g~I~IwDl~t~~------~v~~~~--~-~~~V~sv~fspd 693 (725)
+.. ......++.+......+++.|+. + ..|.+||+.+.. ...... . ...-.+++...+
T Consensus 528 ~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~ 607 (695)
T 2zwa_A 528 VTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITP 607 (695)
T ss_dssp CCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEET
T ss_pred ccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCC
Confidence 211 12222335556553557777765 2 358899998877 222222 1 111223333443
Q ss_pred CCEEEEEEc--------CCeEEEEECCCCeEE
Q 004885 694 LGRILAAAI--------ENYISILDVETQVCR 717 (725)
Q Consensus 694 g~~Lla~s~--------Dg~V~IwDl~tg~~v 717 (725)
+..++.|+. ...|.+||+.+.+-.
T Consensus 608 ~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 608 RKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp TEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred CEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 566666664 246999999987543
No 337
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=93.46 E-value=8.2 Score=40.65 Aligned_cols=102 Identities=7% Similarity=-0.047 Sum_probs=53.8
Q ss_pred CCeEEEEEcCC---CCEEEEEe-C-------CCcEEEEECCCC----eEEE-Eecc------CCCCeEEEEEcCCCCEEE
Q 004885 556 SKVESCHFSPD---GKLLATGG-H-------DKKAVLWCTESF----TVKS-TLEE------HTQWITDVRFSPSLSRLA 613 (725)
Q Consensus 556 ~~V~~i~fSpd---g~~LaSgs-~-------Dg~V~IWdl~~~----~~i~-~l~~------H~~~V~~IafsPd~~~La 613 (725)
.....|+|+|+ +.+|+++. . ...|..|++... .... .+.. .......|+|.|++.+++
T Consensus 66 ~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv 145 (353)
T 2g8s_A 66 GGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFI 145 (353)
T ss_dssp CSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEE
T ss_pred CCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEE
Confidence 45789999996 44444442 2 235666666432 1111 1211 111235799999996555
Q ss_pred EEeC-------------CCeEEEEECCCCC------------eeeEEEecCCCCeEEEEEccCCCeEEEE
Q 004885 614 TSSA-------------DRTVRVWDTENPD------------YSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (725)
Q Consensus 614 sgs~-------------DgtIrvWDl~~~~------------~~l~~~~~h~~~V~sl~fsP~g~~llaS 658 (725)
+.+. .+.|.-+|.+..- .......++. ....++|+|....++++
T Consensus 146 ~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 146 ALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLN 214 (353)
T ss_dssp EECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEE
T ss_pred EECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEE
Confidence 5433 2456666765320 0111223443 47889999943446654
No 338
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=93.14 E-value=1.2 Score=46.51 Aligned_cols=51 Identities=12% Similarity=0.068 Sum_probs=27.3
Q ss_pred CCCEEEEEeC-C---------CcEEEEECCCCeEEE--Eec-cCCCCeEEEEEcCCCCEEEEEeCC
Q 004885 566 DGKLLATGGH-D---------KKAVLWCTESFTVKS--TLE-EHTQWITDVRFSPSLSRLATSSAD 618 (725)
Q Consensus 566 dg~~LaSgs~-D---------g~V~IWdl~~~~~i~--~l~-~H~~~V~~IafsPd~~~Lasgs~D 618 (725)
++++++.|+. + ..|.+||..+.+-.. .+. .......++. .++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence 5677777765 2 468889987754221 111 1111222232 456777777754
No 339
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.05 E-value=1.9 Score=47.49 Aligned_cols=106 Identities=11% Similarity=0.130 Sum_probs=64.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee-eEEEec------CCCCeEEEEEccC---CCeEEEEEeC-----
Q 004885 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTG------HSTTVMSLDFHPS---KEDLLCSCDN----- 661 (725)
Q Consensus 597 ~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~-l~~~~~------h~~~V~sl~fsP~---g~~llaSgs~----- 661 (725)
-...+.|+|.|+++++++-...+.|++++..++... +..+.. ....+..|+|+|+ +..++++-+.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 345679999999987776554457888887554421 222221 2356779999996 5667666542
Q ss_pred -------CCcEEEEECCCC--e---eEEE---Eec--CCCeEEEEEecCCCEEEEEEc
Q 004885 662 -------NSEIRYWSINNG--S---CAGV---FKC--QSGATQMRFQPRLGRILAAAI 702 (725)
Q Consensus 662 -------Dg~I~IwDl~t~--~---~v~~---~~~--~~~V~sv~fspdg~~Lla~s~ 702 (725)
...|.-|++... . .... +.. ......|+|.|||..+++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 234666665422 1 1112 221 245789999999876666553
No 340
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=92.99 E-value=1.9 Score=44.77 Aligned_cols=139 Identities=4% Similarity=-0.060 Sum_probs=82.3
Q ss_pred CCCCEEEEEe--CCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC--------------CeEEEEECCC
Q 004885 565 PDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--------------RTVRVWDTEN 628 (725)
Q Consensus 565 pdg~~LaSgs--~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D--------------gtIrvWDl~~ 628 (725)
.++.+|+... .++.|+..+.+..... .+... . +--|++++.+|+-+... ..|+..+++.
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~~-~l~~~--~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSNIH-KLSND--T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCSCE-EEEEE--E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCCCE-EccCC--c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 4667666554 3567777776554433 33221 1 23457788887766542 3677777776
Q ss_pred CCeeeEEEecCCCCeEEEEEccCCCeEEEEE---eCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEc-CC
Q 004885 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC---DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN 704 (725)
Q Consensus 629 ~~~~l~~~~~h~~~V~sl~fsP~g~~llaSg---s~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~-Dg 704 (725)
.. ...+.. .. +..|+++++.++.+- ..+..|+..++........... .+ ..|+++++.|+..+. ..
T Consensus 98 ~~--~~~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~--~~--~~~~~~g~~iy~t~~g~~ 167 (302)
T 3s25_A 98 HG--STVLDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNH--YL--FTCNTSDRYFYYNNPKNG 167 (302)
T ss_dssp CC--CEEEEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESS--CC--CCSEEETTEEEEECTTTC
T ss_pred Cc--ceEeec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCC--Cc--eEeeEECCEEEEEeCCCc
Confidence 54 222321 11 236788888777665 3455677778875443333332 22 456788888887765 57
Q ss_pred eEEEEECCCCeEEE
Q 004885 705 YISILDVETQVCRL 718 (725)
Q Consensus 705 ~V~IwDl~tg~~v~ 718 (725)
.|.+.++..+....
T Consensus 168 ~Iy~~~l~g~~~~~ 181 (302)
T 3s25_A 168 QLYRYDTASQSEAL 181 (302)
T ss_dssp CEEEEETTTTEEEE
T ss_pred eEEEEECCCCCEEE
Confidence 89999988765443
No 341
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=92.81 E-value=0.29 Score=52.13 Aligned_cols=141 Identities=7% Similarity=-0.028 Sum_probs=82.8
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeccC-CCCeEEEEEc--CCCCEEEEE--eCCCeEEEEECCCCCeeeEEEec----
Q 004885 568 KLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFS--PSLSRLATS--SADRTVRVWDTENPDYSLRTFTG---- 638 (725)
Q Consensus 568 ~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H-~~~V~~Iafs--Pd~~~Lasg--s~DgtIrvWDl~~~~~~l~~~~~---- 638 (725)
.++++++.||.|+-+|..+|+.+..++.. ..++....-. +.+..++.+ ..||.|..+|..++.. ...+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~-~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQ-KLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEE-EEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcE-Eeeeccccce
Confidence 47889999999999999999999988754 1222221111 112234433 5799999999887642 222211
Q ss_pred CCCCeEE---EEE-cc----CCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCe--------EEEEEe-----cCCCEE
Q 004885 639 HSTTVMS---LDF-HP----SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA--------TQMRFQ-----PRLGRI 697 (725)
Q Consensus 639 h~~~V~s---l~f-sP----~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V--------~sv~fs-----pdg~~L 697 (725)
...++.. ... .+ . ...+++++.+|.+...|+++|+.+..+...... .|.+.. ..+..|
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~-~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v 168 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVE-DEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI 168 (339)
T ss_dssp TTCSEEEECC----------C-CEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred eccccccCCCceeeccccccc-CCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence 1122221 000 00 2 235668888999999999999999999753211 111111 123567
Q ss_pred EEEEcCCeEEEEE
Q 004885 698 LAAAIENYISILD 710 (725)
Q Consensus 698 la~s~Dg~V~IwD 710 (725)
+.+..+..|.+.+
T Consensus 169 ~ig~~~y~v~~~~ 181 (339)
T 2be1_A 169 VIGKTIFELGIHS 181 (339)
T ss_dssp EEEEEEEECEECC
T ss_pred EEecceEEEEEEC
Confidence 7777777777655
No 342
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=92.75 E-value=18 Score=41.96 Aligned_cols=150 Identities=8% Similarity=0.043 Sum_probs=91.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEE
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~ 635 (725)
..|.++....++. |-.|+.+| +.+||..+.............|.++... ++ .|..++.+ -|.++|..+.. +..
T Consensus 63 ~~i~~i~~d~~g~-lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~-~g-~lWigt~~-Gl~~~~~~~~~--~~~ 135 (758)
T 3ott_A 63 TRIYCGVIIDNTY-LYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQ-GD-TLWLGALN-GLYTYQLQSRK--LTS 135 (758)
T ss_dssp SCEEEEEEETTTE-EEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEE-TT-EEEEEETT-EEEEEETTTCC--EEE
T ss_pred ceEEEEEEcCCCc-EEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEec-CC-cEEEEcCC-cceeEeCCCCe--EEE
Confidence 4588888876664 55555555 7899987754322111122357776543 44 56666655 68889987655 333
Q ss_pred Ee-----cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec------CCCeEEEEEecCCCEEEEEEcCC
Q 004885 636 FT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------QSGATQMRFQPRLGRILAAAIEN 704 (725)
Q Consensus 636 ~~-----~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~------~~~V~sv~fspdg~~Lla~s~Dg 704 (725)
+. .....|.++..+.++. +.+ +.. +.|..||..++........ ...|.++....++..|.+++. +
T Consensus 136 ~~~~~~~l~~~~i~~i~~d~~g~-lWi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~ 211 (758)
T 3ott_A 136 FDTRRNGLPNNTIYSIIRTKDNQ-IYV-GTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-G 211 (758)
T ss_dssp ECHHHHCCSCSCEEEEEECTTCC-EEE-EET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-E
T ss_pred eccCCCCcCCCeEEEEEEcCCCC-EEE-EeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-C
Confidence 31 1134688888888877 443 333 4588899887654322111 123888888887776666664 5
Q ss_pred eEEEEECCCCeE
Q 004885 705 YISILDVETQVC 716 (725)
Q Consensus 705 ~V~IwDl~tg~~ 716 (725)
.|..||..+++.
T Consensus 212 Gl~~~~~~~~~~ 223 (758)
T 3ott_A 212 YLFQYFPSTGQI 223 (758)
T ss_dssp EEEEEETTTTEE
T ss_pred CCeEEcCCCCeE
Confidence 688899887753
No 343
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=92.72 E-value=8.1 Score=47.77 Aligned_cols=141 Identities=13% Similarity=0.144 Sum_probs=85.4
Q ss_pred CCEEEEEe----------CCCcEEEEECCCCeEEEEe-ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEE
Q 004885 567 GKLLATGG----------HDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (725)
Q Consensus 567 g~~LaSgs----------~Dg~V~IWdl~~~~~i~~l-~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~ 635 (725)
..+|++|. ..|.|++|++...+..... +...++|++++-- +| +|++|- ..+|++|++...+ .++.
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~-~L~~ 919 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEK-ELRT 919 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTS-CEEE
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCc-eEEE
Confidence 35888775 3478999998754432221 2346788888744 34 455443 5789999998765 2332
Q ss_pred EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEE--ECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004885 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW--SINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDV 711 (725)
Q Consensus 636 ~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~Iw--Dl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl 711 (725)
-..+...|..+.....++ +++.|+.-..|.++ +...++.+..-+. ..+++++.|-.+ ..++.+..+|.|.++..
T Consensus 920 ~~~~~~~i~~~~l~~~~~-~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~ 997 (1158)
T 3ei3_A 920 ECNHYNNIMALYLKTKGD-FILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQK 997 (1158)
T ss_dssp EEEECCCSCEEEEEEETT-EEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEE
T ss_pred EeeccccEEEEEEeccCC-EEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEcc-CcEEEEcCCCcEEEEec
Confidence 111112233223323344 56677766666664 4445555444443 567899998765 57778888999998875
Q ss_pred CC
Q 004885 712 ET 713 (725)
Q Consensus 712 ~t 713 (725)
..
T Consensus 998 ~~ 999 (1158)
T 3ei3_A 998 DS 999 (1158)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 344
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=92.17 E-value=0.69 Score=46.25 Aligned_cols=132 Identities=12% Similarity=-0.011 Sum_probs=72.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCe------EEEEeccC--CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee----eE
Q 004885 567 GKLLATGGHDKKAVLWCTESFT------VKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS----LR 634 (725)
Q Consensus 567 g~~LaSgs~Dg~V~IWdl~~~~------~i~~l~~H--~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~----l~ 634 (725)
..+|++...| +|++=...... ....+ ++ =..+.+++|+|++.+.++ .++.+.-.+..+.... ..
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~ 79 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA 79 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence 3456666667 65554433322 11122 22 236789999999886666 6776665555432200 01
Q ss_pred EEecCC--CCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeE------EEEec--CCCeEEEEEecCCCEEEEEEcCC
Q 004885 635 TFTGHS--TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA------GVFKC--QSGATQMRFQPRLGRILAAAIEN 704 (725)
Q Consensus 635 ~~~~h~--~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v------~~~~~--~~~V~sv~fspdg~~Lla~s~Dg 704 (725)
+..+.. ..-.++.|+|+|. |+++ .||.|+-++-.+...- ..+.. =..+..|.|.|+|...++ . |+
T Consensus 80 t~IG~~Gw~~F~a~~fD~~G~-LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav-~-dg 154 (236)
T 1tl2_A 80 KKIGNGGWNQFQFLFFDPNGY-LYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAV-H-GQ 154 (236)
T ss_dssp EEEECSCGGGCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEE-E-TT
T ss_pred cEecccccccceEEEECCCCC-EEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEE-e-CC
Confidence 111110 0136789999987 5545 4699988876432111 11111 135799999999655544 4 77
Q ss_pred eEE
Q 004885 705 YIS 707 (725)
Q Consensus 705 ~V~ 707 (725)
.++
T Consensus 155 ~ly 157 (236)
T 1tl2_A 155 QFY 157 (236)
T ss_dssp EEE
T ss_pred cEE
Confidence 754
No 345
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=91.96 E-value=27 Score=43.13 Aligned_cols=136 Identities=13% Similarity=0.044 Sum_probs=85.3
Q ss_pred CcEEEEECCCCeEEEEeccC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCC---
Q 004885 577 KKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK--- 652 (725)
Q Consensus 577 g~V~IWdl~~~~~i~~l~~H-~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g--- 652 (725)
..|++.+......+..+... ...|...+.. +..++.++ ++.+.++.++.+......-..-...|.|+++.|..
T Consensus 492 ~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~ 568 (1158)
T 3ei3_A 492 ASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSN 568 (1158)
T ss_dssp SCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSST
T ss_pred CEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCc
Confidence 35777777655556566532 3456666654 34666665 67888888876431111112234679999998643
Q ss_pred --CeEEEEEeC-CCcEEEEECCCCeeEEEEec--CCCeEEEEEec--CCCEEEEEEcCCeEEEEEC--CCCe
Q 004885 653 --EDLLCSCDN-NSEIRYWSINNGSCAGVFKC--QSGATQMRFQP--RLGRILAAAIENYISILDV--ETQV 715 (725)
Q Consensus 653 --~~llaSgs~-Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fsp--dg~~Lla~s~Dg~V~IwDl--~tg~ 715 (725)
..+++.|.. |++|+|+++.+.+.+..... ...+.++++.. ...+|+++-.||.+..+.+ .+|.
T Consensus 569 ~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~ 640 (1158)
T 3ei3_A 569 GLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGL 640 (1158)
T ss_dssp TCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCC
T ss_pred ccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCc
Confidence 247777775 99999999998776655543 23455665542 2246788888998755544 4553
No 346
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=91.83 E-value=1.1 Score=50.74 Aligned_cols=142 Identities=6% Similarity=-0.009 Sum_probs=89.7
Q ss_pred cEEEEECCC----CeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCC-----------CeeeEEEecCCC
Q 004885 578 KAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENP-----------DYSLRTFTGHST 641 (725)
Q Consensus 578 ~V~IWdl~~----~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-DgtIrvWDl~~~-----------~~~l~~~~~h~~ 641 (725)
.|.|.|.+. +..+..+-.-......|.++|||+++++++. +.+|.|+|++.- ..++..-..-.-
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl 378 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL 378 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence 467777765 2222222222445568899999999887765 889999998741 112222222334
Q ss_pred CeEEEEEccCCCeEEEEEeCCCcEEEEECCCC----------eeEEEEecCCCeEEEEE------ecCCCEEEEEEc---
Q 004885 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----------SCAGVFKCQSGATQMRF------QPRLGRILAAAI--- 702 (725)
Q Consensus 642 ~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~----------~~v~~~~~~~~V~sv~f------spdg~~Lla~s~--- 702 (725)
.....+|+++| +.+.+.--|..|..|++... ..+..+..+..+-.+.- .++|++|++...
T Consensus 379 GPlHt~Fd~~G-~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~sk 457 (638)
T 3sbq_A 379 GPLHTTFDGRG-NAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSK 457 (638)
T ss_dssp CEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCT
T ss_pred cccEEEECCCC-ceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEeccccc
Confidence 56788999998 57777778999999999742 34555554544545544 578888888754
Q ss_pred CCe----------EEEEECCCC--eEEEEE
Q 004885 703 ENY----------ISILDVETQ--VCRLKL 720 (725)
Q Consensus 703 Dg~----------V~IwDl~tg--~~v~~l 720 (725)
|.. -.++|+... ++++..
T Consensus 458 drfl~vGpl~pen~QlidIsGdkM~lv~D~ 487 (638)
T 3sbq_A 458 DRFLPVGPLHPENDQLIDISGDEMKLVHDG 487 (638)
T ss_dssp TSSCCCSSSCCEEEEEEECSSSSCEEEEEE
T ss_pred ccCcCCCCCCCCcceeEecCCCceEEEecC
Confidence 443 367777543 444443
No 347
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=90.55 E-value=27 Score=40.41 Aligned_cols=149 Identities=9% Similarity=0.005 Sum_probs=89.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec----cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004885 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~----~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~ 632 (725)
.|.++... ++. |..++.+ -|..+|..+.+...... .....|.++....++.+.+ ++.+ -|..+|..+..
T Consensus 104 ~i~~i~~~-~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~-- 176 (758)
T 3ott_A 104 DVRTMALQ-GDT-LWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGK-- 176 (758)
T ss_dssp CEEEEEEE-TTE-EEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTE--
T ss_pred eEEEEEec-CCc-EEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCc--
Confidence 47777553 554 5555555 68889987655432211 1135688888888777655 4444 47788887654
Q ss_pred eEEEecC------CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeEEEEEecCCCEEEEEEcCCe
Q 004885 633 LRTFTGH------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENY 705 (725)
Q Consensus 633 l~~~~~h------~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~-~~~~V~sv~fspdg~~Lla~s~Dg~ 705 (725)
...+... ...|.++..+.++..+.+ +.. +.|..+|..+++...... ....|.++....+|... +|+ ++-
T Consensus 177 ~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWi-gt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igT-~~G 252 (758)
T 3ott_A 177 FEGIPLPVHSSQSNLFVNSLLEDTTRQCVWI-GTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLL-AGT-DNG 252 (758)
T ss_dssp EEEECCCCCTTCSSCCEEEEEEETTTTEEEE-EEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEE-EEE-TTE
T ss_pred eEEecCCCccccccceeEEEEEECCCCEEEE-EEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEE-EEe-CCc
Confidence 2222111 124888888877664443 332 458889988765432211 13458888888775544 455 456
Q ss_pred EEEEECCCCeE
Q 004885 706 ISILDVETQVC 716 (725)
Q Consensus 706 V~IwDl~tg~~ 716 (725)
|.++|..+++.
T Consensus 253 l~~~~~~~~~~ 263 (758)
T 3ott_A 253 LYVYHNDTTPL 263 (758)
T ss_dssp EEEECCTTSCC
T ss_pred eeEEecCCCcE
Confidence 88888876543
No 348
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=89.44 E-value=0.61 Score=49.60 Aligned_cols=111 Identities=6% Similarity=0.084 Sum_probs=70.8
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEEEecC-CCCeEEEEE--ccCCCeEEEEE-eCCCcEEEEECCCCeeEEEEecCCCe
Q 004885 610 SRLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDF--HPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQSGA 685 (725)
Q Consensus 610 ~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h-~~~V~sl~f--sP~g~~llaSg-s~Dg~I~IwDl~t~~~v~~~~~~~~V 685 (725)
.+++.++.||.|.-+|..+++ .+-.+... ..++....- .+.+..+++.. ..||.|..+|..+|.....+....-+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~-~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGH-IIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTE-EEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCc-EEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 468889999999999998887 34444332 122222110 01122344443 57999999999988666555431111
Q ss_pred --EEEEEe-----------cCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 686 --TQMRFQ-----------PRLGRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 686 --~sv~fs-----------pdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
.-+... ..++.+++++.++.+...|+++|+.+.++.
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 112211 145788899999999999999999998886
No 349
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=88.27 E-value=3.6 Score=51.47 Aligned_cols=158 Identities=10% Similarity=0.161 Sum_probs=90.1
Q ss_pred CCCeEEEEEcCCCCEEEEEe-------CCCcEEEEECCCCeEEEEeccCCCCeEEEEEcC--CCC-EEEEEeC---CCeE
Q 004885 555 TSKVESCHFSPDGKLLATGG-------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP--SLS-RLATSSA---DRTV 621 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs-------~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsP--d~~-~Lasgs~---DgtI 621 (725)
...|..-+.+++.++++..| -.|.+-+|.++.. .-..++||......+...- ... .++.+.. .+.+
T Consensus 150 ~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kL 228 (1630)
T 1xi4_A 150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL 228 (1630)
T ss_pred cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceE
Confidence 34577778888888776443 3477888887643 3345677776665555432 222 3332222 3688
Q ss_pred EEEECCCC-----Ce---eeEEEecC---CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEE
Q 004885 622 RVWDTENP-----DY---SLRTFTGH---STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMR 689 (725)
Q Consensus 622 rvWDl~~~-----~~---~l~~~~~h---~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~ 689 (725)
+|-++... .. .+..+... .....++..++... ++..-+.-|.|++||+.++.++..-+. ...|...+
T Consensus 229 hi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g-~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~ 307 (1630)
T 1xi4_A 229 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTA 307 (1630)
T ss_pred EEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccC-EEEEEecCceEEEEecccchhhhhccccCCceEEec
Confidence 88888654 10 11111111 22344566677655 555666789999999999999866554 34444444
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCC
Q 004885 690 FQPRLGRILAAAIENYISILDVETQ 714 (725)
Q Consensus 690 fspdg~~Lla~s~Dg~V~IwDl~tg 714 (725)
-....+-+++....|.|.-..+...
T Consensus 308 ~~~~~~g~~~vnr~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 308 PHEATAGIIGVNRKGQVLSVCVEEE 332 (1630)
T ss_pred cCCCCCceEEEcCCceEEEEEEccc
Confidence 4433333444455565555444433
No 350
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=87.30 E-value=46 Score=40.05 Aligned_cols=38 Identities=16% Similarity=0.344 Sum_probs=33.4
Q ss_pred CeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 684 ~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
.+.+++..++..++++.+.|+++|||++.+++|+.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 36777788888899999999999999999999998764
No 351
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=86.85 E-value=6.4 Score=45.75 Aligned_cols=148 Identities=11% Similarity=0.096 Sum_probs=79.9
Q ss_pred CCCCEEEEEeCC----CcEEEEECCCCeEEEEe-c-------cCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEEC
Q 004885 565 PDGKLLATGGHD----KKAVLWCTESFTVKSTL-E-------EHTQWITDVRFSPSLSRLATSSAD------RTVRVWDT 626 (725)
Q Consensus 565 pdg~~LaSgs~D----g~V~IWdl~~~~~i~~l-~-------~H~~~V~~IafsPd~~~Lasgs~D------gtIrvWDl 626 (725)
.++.+++.|+.+ ..+.+||..+.+-...- . ........+.+..++..++.|+.+ ..+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 367777777754 46888888765432221 1 111122233332266677777643 25778888
Q ss_pred CCCCeeeEEEec--CCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCCCeeEEEEe-----c-CCCeEEEEEecC-CC
Q 004885 627 ENPDYSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFK-----C-QSGATQMRFQPR-LG 695 (725)
Q Consensus 627 ~~~~~~l~~~~~--h~~~V~sl~fsP~g~~llaSgs~Dg--~I~IwDl~t~~~v~~~~-----~-~~~V~sv~fspd-g~ 695 (725)
.+.. ...+.. ....-.+++...++. +++.|+.++ .+.+||+.+......-. . ......+.+..+ +.
T Consensus 476 ~t~~--W~~~~~~p~~R~~h~~~~~~~~~-iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~ 552 (695)
T 2zwa_A 476 KTRE--WSMIKSLSHTRFRHSACSLPDGN-VLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQ 552 (695)
T ss_dssp TTTE--EEECCCCSBCCBSCEEEECTTSC-EEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTE
T ss_pred CCCc--EEECCCCCCCcccceEEEEcCCE-EEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCE
Confidence 8754 121111 111112233323444 777776544 69999999876554332 1 122333555655 44
Q ss_pred EEEEEEc--C-----CeEEEEECCCCe
Q 004885 696 RILAAAI--E-----NYISILDVETQV 715 (725)
Q Consensus 696 ~Lla~s~--D-----g~V~IwDl~tg~ 715 (725)
.++.|+. + +.|.+||+.+.+
T Consensus 553 iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 553 GIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp EEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred EEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 5666655 2 468999998776
No 352
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=86.59 E-value=0.29 Score=41.26 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=31.6
Q ss_pred CCCcchHHHHHHHHHHHHHhhCChHHHHHHHHhcCCCCCC
Q 004885 2 SQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTD 41 (725)
Q Consensus 2 ~~~~~~~~~~L~~yiydyl~k~~~~~~A~~f~~e~~~~~~ 41 (725)
..+.+.++ -||.-|++||..+++.+++.+|.+|.+++.+
T Consensus 4 iLt~rQ~e-EL~kaI~~YL~~~~~~~~~~alr~e~~~~~~ 42 (88)
T 1uuj_A 4 VLSQRQRD-ELNRAIADYLRSNGYEEAYSVFKKEAELDMN 42 (88)
T ss_dssp CCCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred CCCHHHHH-HHHHHHHHHHHhcCcHHHHHHHHHHhcCCCC
Confidence 33444433 5799999999999999999999999887754
No 353
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=85.20 E-value=18 Score=36.85 Aligned_cols=141 Identities=15% Similarity=0.079 Sum_probs=70.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEE
Q 004885 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~ 636 (725)
.|..|+...+ ..++. . ||.|+.|-......+..-..-...|..|+.-.+. .+.-. |+.|..|-...... +-..
T Consensus 64 ~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gq-lg~~ 136 (282)
T 3qhy_B 64 GVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQ-TTVP 136 (282)
T ss_dssp CCCEEEECSS-EEEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTST-TSCC
T ss_pred CEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCc-CCCC
Confidence 4666666432 23333 4 8999999765422111111113467777765443 33334 89999997665331 1111
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEE-EEecCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004885 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILDV 711 (725)
Q Consensus 637 ~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~-~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl 711 (725)
......|..|+.-... .+ .-. ||.|+.|-......+. .......|..|+...+ +.++. .||.|+.|=.
T Consensus 137 ~~~~~~i~~i~~G~~~--~~-~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~ 205 (282)
T 3qhy_B 137 AEAQSGVTALDGGVYT--AL-AVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGD 205 (282)
T ss_dssp GGGGSSEEEEEECSSE--EE-EEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEE-ETTEEEEEEC
T ss_pred ccCCCCeEEEEcccCE--EE-EEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCC--EEEEE-ECCeEEEEEC
Confidence 1122456666654332 22 223 6888888765321111 1111345666655433 33333 5777777754
No 354
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.11 E-value=17 Score=44.65 Aligned_cols=37 Identities=16% Similarity=0.363 Sum_probs=32.0
Q ss_pred eEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 685 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 685 V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
+.+++..++..++++.+.|+++||||+.+++|+.+..
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 4556677787899999999999999999999998864
No 355
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=85.02 E-value=14 Score=40.83 Aligned_cols=105 Identities=16% Similarity=0.127 Sum_probs=62.8
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCC--eeeEEEe---------cCCCCeEEEEEccC---CCeEEEEEeC-
Q 004885 598 QWITDVRFSPSLS-RLATSSADRTVRVWDTENPD--YSLRTFT---------GHSTTVMSLDFHPS---KEDLLCSCDN- 661 (725)
Q Consensus 598 ~~V~~IafsPd~~-~Lasgs~DgtIrvWDl~~~~--~~l~~~~---------~h~~~V~sl~fsP~---g~~llaSgs~- 661 (725)
...+.|+|.|++. +|+++...|.|++++..... ..+..+. ........|+|+|+ ..+++++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4567899999986 56666778999999754321 1222221 11356889999996 3345555432
Q ss_pred -C----------CcEEEEECCC----------CeeEEEEec---CCCeEEEEEecCCCEEEEEEc
Q 004885 662 -N----------SEIRYWSINN----------GSCAGVFKC---QSGATQMRFQPRLGRILAAAI 702 (725)
Q Consensus 662 -D----------g~I~IwDl~t----------~~~v~~~~~---~~~V~sv~fspdg~~Lla~s~ 702 (725)
+ ..|.-|.+.. .+.+..+.. ......|+|.|||..+++.+.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 1344455532 223333331 345789999999876666554
No 356
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=83.20 E-value=27 Score=36.75 Aligned_cols=147 Identities=7% Similarity=0.003 Sum_probs=70.8
Q ss_pred CCeEEEEEcC--CCCEEEEEeCCC----cEEEEECCCCeEEEEec------c--------CCCCeEEEEEcC-C-CCEEE
Q 004885 556 SKVESCHFSP--DGKLLATGGHDK----KAVLWCTESFTVKSTLE------E--------HTQWITDVRFSP-S-LSRLA 613 (725)
Q Consensus 556 ~~V~~i~fSp--dg~~LaSgs~Dg----~V~IWdl~~~~~i~~l~------~--------H~~~V~~IafsP-d-~~~La 613 (725)
..|.+|++.| .+.+++ +...+ .|...+ +.++.-..+. . +...|.+|++.| + ...|+
T Consensus 55 ~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLM-AARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp SEEEEEEECSSSTTCEEE-EEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CceEEEEECCCCCCeEEE-EecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 4699999998 444444 44444 344332 2222211111 0 112577899987 2 45566
Q ss_pred EEeCCCeEEEEECCCCCeeeEEEec-------------------CCCCeEEEEEccCC-CeEEEEEeCCCcEEEEECCCC
Q 004885 614 TSSADRTVRVWDTENPDYSLRTFTG-------------------HSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNG 673 (725)
Q Consensus 614 sgs~DgtIrvWDl~~~~~~l~~~~~-------------------h~~~V~sl~fsP~g-~~llaSgs~Dg~I~IwDl~t~ 673 (725)
.+...+.|...+ .+......+.. ....|.+|.++|.. ..+++... ++.|...+ +.+
T Consensus 133 ~g~~~ggl~~S~--DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~-~ggl~~s~-DgG 208 (394)
T 3b7f_A 133 AGTSPQGLFRST--DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS-SGGVFEST-DAG 208 (394)
T ss_dssp EEEETTEEEEES--STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE-TBEEEEES-STT
T ss_pred EEecCCcEEEEc--CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC-CCCEEEEC-CCC
Confidence 665555544332 22212222211 12357899999843 33554433 34444332 222
Q ss_pred eeEEEEec--------------CCCeEEEEEecCC-CEEEEEEcCCeEEEE
Q 004885 674 SCAGVFKC--------------QSGATQMRFQPRL-GRILAAAIENYISIL 709 (725)
Q Consensus 674 ~~v~~~~~--------------~~~V~sv~fspdg-~~Lla~s~Dg~V~Iw 709 (725)
+.-..+.. ...+.+|.++|.. ..|+++...+ |...
T Consensus 209 ~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s 258 (394)
T 3b7f_A 209 TDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRM 258 (394)
T ss_dssp SSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEE
T ss_pred CCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEe
Confidence 22111111 1247889998863 5666655433 4443
No 357
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=83.09 E-value=45 Score=36.61 Aligned_cols=103 Identities=14% Similarity=0.074 Sum_probs=58.4
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCcEEEEECCCC---eEEEEec---------cCCCCeEEEEEcCC---CCEEEEE-eC--
Q 004885 557 KVESCHFSPDGK-LLATGGHDKKAVLWCTESF---TVKSTLE---------EHTQWITDVRFSPS---LSRLATS-SA-- 617 (725)
Q Consensus 557 ~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~~~---~~i~~l~---------~H~~~V~~IafsPd---~~~Lasg-s~-- 617 (725)
.-..|+|.||+. .|+++...|.|++++.+.. ..+..+. .....+..|+|+|+ ..+|++. +.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 367899999996 5566678899999975432 1222221 11356789999996 3334332 21
Q ss_pred C----------CeEEEEECCCC---------CeeeEEEe--cCCCCeEEEEEccCCCeEEEEEe
Q 004885 618 D----------RTVRVWDTENP---------DYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCD 660 (725)
Q Consensus 618 D----------gtIrvWDl~~~---------~~~l~~~~--~h~~~V~sl~fsP~g~~llaSgs 660 (725)
+ ..|.-|.+... ...+..+. ........|.|.|||. |+++.+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~G 157 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILG 157 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEEC
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeC
Confidence 1 13444665421 11222222 1122368899999997 555544
No 358
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=82.75 E-value=0.8 Score=38.83 Aligned_cols=43 Identities=23% Similarity=0.344 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhCChHHHHHHHHhcCCCCCCCCCC-CCCCccHH
Q 004885 11 MLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAI-DAPGGFLF 53 (725)
Q Consensus 11 ~L~~yiydyl~k~~~~~~A~~f~~e~~~~~~~~~~-~~~~~fL~ 53 (725)
-+|--||-||..+|+..||-+|-+|+++...+... ..|.|-|-
T Consensus 7 evN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~~~~~~VppgaLV 50 (90)
T 2xtc_A 7 EVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALI 50 (90)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTGGGSCCCGGGSCTTHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCCccccccccCCcchHH
Confidence 48989999999999999999999999886543322 23444443
No 359
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=82.35 E-value=42 Score=35.97 Aligned_cols=135 Identities=7% Similarity=0.088 Sum_probs=80.7
Q ss_pred cEEEEECCCC--eEEEEecc------CCCCeEEEEEc---CC----CCEEEEEe-CCCeEEEEECCCCCeeeEEEe----
Q 004885 578 KAVLWCTESF--TVKSTLEE------HTQWITDVRFS---PS----LSRLATSS-ADRTVRVWDTENPDYSLRTFT---- 637 (725)
Q Consensus 578 ~V~IWdl~~~--~~i~~l~~------H~~~V~~Iafs---Pd----~~~Lasgs-~DgtIrvWDl~~~~~~l~~~~---- 637 (725)
+|.+||+.+. +.++.+.- ....+.+|++. |+ +.+++... .+.-|.|+|+.++. ..+...
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~-swRv~~~~~~ 202 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQD-SWNVTHPTFK 202 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTE-EEEEECGGGS
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCc-EEEEccCCCc
Confidence 6889999998 88877642 13467888887 22 34555554 46789999998876 223221
Q ss_pred ----------cC----CCCeEEEEEccC----CCeEEEEEeCCCcEEEEE---CCCC---eeEEEEecC---CCeEEEEE
Q 004885 638 ----------GH----STTVMSLDFHPS----KEDLLCSCDNNSEIRYWS---INNG---SCAGVFKCQ---SGATQMRF 690 (725)
Q Consensus 638 ----------~h----~~~V~sl~fsP~----g~~llaSgs~Dg~I~IwD---l~t~---~~v~~~~~~---~~V~sv~f 690 (725)
+. ...|..|+++|+ ++.+++.......++-.. +++. ..+..+... .....+++
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 11 246888999998 676766665443343332 2222 222222222 23445667
Q ss_pred e-cCCCEEEEEEcCCeEEEEECCC
Q 004885 691 Q-PRLGRILAAAIENYISILDVET 713 (725)
Q Consensus 691 s-pdg~~Lla~s~Dg~V~IwDl~t 713 (725)
+ .+|..+++--..+.|.+|+..+
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTS
T ss_pred eCCCCeEEEEeccCCeEEEEeCCC
Confidence 6 4444444445578999999876
No 360
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=81.47 E-value=86 Score=37.67 Aligned_cols=38 Identities=13% Similarity=0.343 Sum_probs=30.9
Q ss_pred CeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe
Q 004885 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680 (725)
Q Consensus 642 ~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~ 680 (725)
.+.+++..++.. ++++-+.|+++|||++.++.|+.+..
T Consensus 237 ~~~~~~~~~~~~-~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYN-VLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTT-EEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCc-EEEEEECCCEEEEEECCCCCeEeeec
Confidence 466777777766 56678889999999999999998775
No 361
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=77.48 E-value=54 Score=38.46 Aligned_cols=147 Identities=16% Similarity=0.149 Sum_probs=75.9
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEeccC-------CCCeEEEEEcCC-CCEEEEEeCCCe----E
Q 004885 555 TSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPS-LSRLATSSADRT----V 621 (725)
Q Consensus 555 ~~~V~~i~fSpd-g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H-------~~~V~~IafsPd-~~~Lasgs~Dgt----I 621 (725)
.+.|.+|+++|. ...++++...+.|...+ +.++.-..+..+ ...|.+|+++|. ...++.+..+.. .
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 457999999995 45666777777776655 233333333222 246999999984 345555543311 3
Q ss_pred EEEECCCCCeeeEEEec---------CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-------cCCCe
Q 004885 622 RVWDTENPDYSLRTFTG---------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------CQSGA 685 (725)
Q Consensus 622 rvWDl~~~~~~l~~~~~---------h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~-------~~~~V 685 (725)
.||--......-..+.. ....+..|+++|.....++.+...+.|. ...+.|+--..+. ....+
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCCe
Confidence 34433333212222211 0013567888886544555555333332 2222222111111 12457
Q ss_pred EEEEEecCC-CEEEEEEcC
Q 004885 686 TQMRFQPRL-GRILAAAIE 703 (725)
Q Consensus 686 ~sv~fspdg-~~Lla~s~D 703 (725)
..|.++|.. ..++++..+
T Consensus 172 ~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEECTTSTTCEEEEESS
T ss_pred EEEEECCCCCCEEEEEEcC
Confidence 888998853 456666554
No 362
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=76.25 E-value=22 Score=36.21 Aligned_cols=142 Identities=12% Similarity=0.020 Sum_probs=75.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEE
Q 004885 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~ 636 (725)
.|..|+... .+.+.-. ||.|+.|-......+.........|..|+.-.+...+ -. |+.|..|-...... +..-
T Consensus 103 ~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~--l~-~G~v~~wG~n~~gq-lg~p 175 (282)
T 3qhy_B 103 GVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALA--VK-NGGVIAWGDNYFGQ-TTVP 175 (282)
T ss_dssp SEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEE--EE-TTEEEEEECCTTST-TSCC
T ss_pred CeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEE--EE-CCEEEEecCCCCCC-CCCc
Confidence 477777653 3333344 8999999765422111111123457777665433222 33 79999997765331 1111
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEE-EEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILDVE 712 (725)
Q Consensus 637 ~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~-~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~ 712 (725)
......|..|+.-.. ..++. .||.|+.|-....-.+. ..+....|..|+.... +.++.. |+.|+.|=..
T Consensus 176 ~~~~~~v~~i~~G~~--hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~--h~~al~-~g~v~~wG~n 245 (282)
T 3qhy_B 176 AEAQSGVDDVAGGIF--HSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEW--YSLALK-NGKVIAWGSS 245 (282)
T ss_dssp GGGGSSEEEEEECSS--EEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSS--CEEEEE-TTEEEEESTT
T ss_pred eecCCCeEEEEecCC--EEEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCC--EEEEEE-CCEEEEecCC
Confidence 111245777766543 23434 48999999765421111 1112345777765543 233334 8888888543
No 363
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=74.59 E-value=50 Score=34.64 Aligned_cols=50 Identities=10% Similarity=0.155 Sum_probs=26.3
Q ss_pred CEEEEEeCCCcEEEEECCC----CeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCC
Q 004885 568 KLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSP-SLSRLATSSADR 619 (725)
Q Consensus 568 ~~LaSgs~Dg~V~IWdl~~----~~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~Dg 619 (725)
..|.+|...| +.+++... ...+... .....|.+|+++| +...|+.+...+
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~-~~~~~v~~i~~dp~~~~~l~~g~~~g 77 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPV-FLGHTIHHIVQDPREPERMLMAARTG 77 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEE-STTSEEEEEEECSSSTTCEEEEEEC-
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCcc-CCCCceEEEEECCCCCCeEEEEecCC
Confidence 3677777776 55555332 2222111 2245699999998 333444444444
No 364
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=73.71 E-value=75 Score=32.15 Aligned_cols=154 Identities=11% Similarity=0.034 Sum_probs=86.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEC---CCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCC--
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCT---ESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENP-- 629 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl---~~~~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~-- 629 (725)
+.|.++.......+|+.-+.+|.++.-.+ ........+. ....|..+.... +..+++..+.+|.|+...+..-
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 34544444444445555566777665433 2221111133 345566664421 4678999999999999887542
Q ss_pred ---CeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC---------CeeEEEEecCCCeEEEEEecCCCEE
Q 004885 630 ---DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---------GSCAGVFKCQSGATQMRFQPRLGRI 697 (725)
Q Consensus 630 ---~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t---------~~~v~~~~~~~~V~sv~fspdg~~L 697 (725)
......+.. ...+..+........++ ..+..|.+..+.... |.....+.....|..+....++.++
T Consensus 103 ~~~G~~~i~lke-gD~l~~~~~~~~~~~il-l~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~l 180 (276)
T 3no0_A 103 KAQGMPIIKLTE-GDEVVSIASSVDETHIL-LFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYL 180 (276)
T ss_dssp CSTTEECSCCCT-TCCEEEEEECCSSCEEE-EEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEE
T ss_pred hcCCeEEEecCC-CCEEEEEEEeCCCCEEE-EEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEE
Confidence 111112222 24455555554445444 556678877776532 2222223334567777666666789
Q ss_pred EEEEcCCeEEEEECC
Q 004885 698 LAAAIENYISILDVE 712 (725)
Q Consensus 698 la~s~Dg~V~IwDl~ 712 (725)
+.++..|.++...+.
T Consensus 181 l~~T~~G~~kr~~~~ 195 (276)
T 3no0_A 181 LVITAKGRVKKISHE 195 (276)
T ss_dssp EEEETTSCEEEEEGG
T ss_pred EEEeCCCcEEEeEHH
Confidence 999999988888764
No 365
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=70.26 E-value=1.1e+02 Score=31.88 Aligned_cols=153 Identities=9% Similarity=-0.005 Sum_probs=88.0
Q ss_pred CCeEEEEEcC---CCCEEEEEeCCCcEEEEECCCC-------eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004885 556 SKVESCHFSP---DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (725)
Q Consensus 556 ~~V~~i~fSp---dg~~LaSgs~Dg~V~IWdl~~~-------~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWD 625 (725)
..|.++..-. +..+++.++.+|.|+...+... .....++.. ..+..+........|+..+..|.+..+.
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~-D~lv~~~~~~~~d~ill~T~~G~~~rf~ 173 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDN-DELVGAVLCSAGDDLLLVSANGQSIRFS 173 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCC-CEEEEEEEecCCCEEEEEECCCeEEEEE
Confidence 3455443332 5779999999999999887542 222234443 4455555555566788888899888777
Q ss_pred CC--CCC--------eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCC-------eeEEEEec---CCCe
Q 004885 626 TE--NPD--------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-------SCAGVFKC---QSGA 685 (725)
Q Consensus 626 l~--~~~--------~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~-------~~v~~~~~---~~~V 685 (725)
+. .-. .....+. ....|.++...+.+.+ ++..+..|.++.-.+... +-+..++. .+.+
T Consensus 174 ~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~-ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~l 251 (327)
T 3uc1_A 174 ATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTY-LLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRL 251 (327)
T ss_dssp CCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCE-EEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSE
T ss_pred CcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCE-EEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeE
Confidence 66 211 0111121 2345666666555453 446677898888876421 22222222 3345
Q ss_pred EEEEEecCCCEEEEEEcCCeEEEEEC
Q 004885 686 TQMRFQPRLGRILAAAIENYISILDV 711 (725)
Q Consensus 686 ~sv~fspdg~~Lla~s~Dg~V~IwDl 711 (725)
..+....+...++..+.+|.+..+++
T Consensus 252 v~~~~~~~~~~i~l~T~~G~~ir~~~ 277 (327)
T 3uc1_A 252 VGALIVDDDSELYAVTSGGGVIRTAA 277 (327)
T ss_dssp EEEEEECTTCEEEEEEGGGCEEEEEG
T ss_pred EEEEEeCCCccEEEEcCCCeEEEEeh
Confidence 55554444567777777777666654
No 366
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=67.02 E-value=1.2e+02 Score=31.18 Aligned_cols=145 Identities=7% Similarity=0.036 Sum_probs=82.5
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeE-------E--EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC---CC--
Q 004885 565 PDGKLLATGGHDKKAVLWCTESFTV-------K--STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---PD-- 630 (725)
Q Consensus 565 pdg~~LaSgs~Dg~V~IWdl~~~~~-------i--~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~---~~-- 630 (725)
++..++++.+.+|.|+-..+..... + ..++.. ..+..+........++..+..|.++-+.... ..
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 4566788999999999887654321 1 122333 3344444444556777778888876665532 11
Q ss_pred ---ee---eEEEecCCCCeEEEEEcc---CCCeEEEEEeCCCcEEEEECCC-------CeeEEEEecCCCeEEEEEecCC
Q 004885 631 ---YS---LRTFTGHSTTVMSLDFHP---SKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQPRL 694 (725)
Q Consensus 631 ---~~---l~~~~~h~~~V~sl~fsP---~g~~llaSgs~Dg~I~IwDl~t-------~~~v~~~~~~~~V~sv~fspdg 694 (725)
.. ...+. ....|.++...+ ... .++..+..|.++...+.. |.....+.....+..+......
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~-~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~ 162 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDA-YLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKD 162 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTC-EEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTT
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCC-EEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCC
Confidence 00 00111 123454443332 234 344667799999888743 2222223334566666666555
Q ss_pred CEEEEEEcCCeEEEEECC
Q 004885 695 GRILAAAIENYISILDVE 712 (725)
Q Consensus 695 ~~Lla~s~Dg~V~IwDl~ 712 (725)
..++..+.+|.+..+.+.
T Consensus 163 ~~i~l~T~~G~~~r~~~~ 180 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSR 180 (312)
T ss_dssp CEEEEEETTSEEEEEEGG
T ss_pred CEEEEEeCCCcEEEEEHH
Confidence 788889999988888764
No 367
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=63.28 E-value=71 Score=36.28 Aligned_cols=57 Identities=14% Similarity=0.189 Sum_probs=41.1
Q ss_pred eEEEEEccCCCeEEEEEeCC------------CcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEE
Q 004885 643 VMSLDFHPSKEDLLCSCDNN------------SEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAA 700 (725)
Q Consensus 643 V~sl~fsP~g~~llaSgs~D------------g~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~ 700 (725)
.-.|+|+|.|. |++.-+.+ ..+.+.+..+++..+.+.. ...++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~-LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCC-EEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCC-EEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 46789999998 44443322 2356667777777666655 5679999999999998876
No 368
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=58.47 E-value=1.7e+02 Score=30.23 Aligned_cols=152 Identities=12% Similarity=0.080 Sum_probs=85.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEC---CC------CeEEEE---eccCCCCeEEE-EEcC--CCCEEEEEeCCCeEE
Q 004885 558 VESCHFSPDGKLLATGGHDKKAVLWCT---ES------FTVKST---LEEHTQWITDV-RFSP--SLSRLATSSADRTVR 622 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl---~~------~~~i~~---l~~H~~~V~~I-afsP--d~~~Lasgs~DgtIr 622 (725)
+..+........|+.-+..|.++...+ .. +.++.. +.. ...|..+ .+.. +..++++.+.+|.|+
T Consensus 44 ~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~e~~~v~~T~~G~iK 122 (327)
T 3uc1_A 44 VAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQP-EERIAQVIQIRGYTDAPYLVLATRNGLVK 122 (327)
T ss_dssp EEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCT-TCCEEEEEEESSTTSSSEEEEEETTSEEE
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCC-CCEEEEEEEeccCCCCCEEEEEcCCCEEE
Confidence 444444334455655566777665543 21 222211 222 3445554 4442 577999999999999
Q ss_pred EEECCCCC------eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC--C---------CeeEEEEecCCCe
Q 004885 623 VWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--N---------GSCAGVFKCQSGA 685 (725)
Q Consensus 623 vWDl~~~~------~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~--t---------~~~v~~~~~~~~V 685 (725)
...+..-. .....+.. ...+..+........++ ..+..|.+..+.+. . |.....+.....|
T Consensus 123 r~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~il-l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~V 200 (327)
T 3uc1_A 123 KSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLL-LVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRL 200 (327)
T ss_dssp EEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEE-EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCE
T ss_pred EeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEE-EEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEE
Confidence 98765421 11112233 34455555554545455 45557877777665 2 1111223335567
Q ss_pred EEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885 686 TQMRFQPRLGRILAAAIENYISILDVE 712 (725)
Q Consensus 686 ~sv~fspdg~~Lla~s~Dg~V~IwDl~ 712 (725)
.++...+++.+|+.++..|.++...+.
T Consensus 201 v~~~~~~~~~~ll~~T~~G~~Krt~l~ 227 (327)
T 3uc1_A 201 LSLNVVREGTYLLVATSGGYAKRTAIE 227 (327)
T ss_dssp EEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred EEEEEECCCCEEEEEeCCCcEEEEEHH
Confidence 777766666789999999998887754
No 369
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=58.22 E-value=2.4e+02 Score=31.76 Aligned_cols=42 Identities=10% Similarity=-0.005 Sum_probs=28.7
Q ss_pred cCCCeEEEEEecCC--CEEEEEEcC----CeEEEEECCCCeEEEEEeC
Q 004885 681 CQSGATQMRFQPRL--GRILAAAIE----NYISILDVETQVCRLKLQV 722 (725)
Q Consensus 681 ~~~~V~sv~fspdg--~~Lla~s~D----g~V~IwDl~tg~~v~~l~G 722 (725)
|...+....|.|+. -.++.+..+ ....+.|.++|+++..+.+
T Consensus 362 HGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~~~~ 409 (591)
T 2zux_A 362 HGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILWGVYA 409 (591)
T ss_dssp CCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECC
T ss_pred CCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEEEEcCC
Confidence 34456666788874 356666554 1466789999999988764
No 370
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=55.28 E-value=1.6e+02 Score=34.06 Aligned_cols=104 Identities=12% Similarity=0.089 Sum_probs=55.5
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEeccC-------CCCeEEEEEcC-CCCEEEEEeCC-------C
Q 004885 556 SKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSP-SLSRLATSSAD-------R 619 (725)
Q Consensus 556 ~~V~~i~fSpdg-~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H-------~~~V~~IafsP-d~~~Lasgs~D-------g 619 (725)
+.|.+|+|+|.. ..|+++...+.|..++- .++.-..+..+ ...|.+|+++| +...|+.+... +
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D-~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~ 101 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDP-STETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPN 101 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEET-TTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCC-CCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccC
Confidence 379999999963 45666666666666653 23332233222 24599999999 44445444321 1
Q ss_pred eEEEEECCCCCeeeEEEe-cCC--------CCeEEEEEccCCCeEEEEEe
Q 004885 620 TVRVWDTENPDYSLRTFT-GHS--------TTVMSLDFHPSKEDLLCSCD 660 (725)
Q Consensus 620 tIrvWDl~~~~~~l~~~~-~h~--------~~V~sl~fsP~g~~llaSgs 660 (725)
...||--..+...-..+. ... ..+.+|+++|....+++.+.
T Consensus 102 ~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~ 151 (737)
T 2cn3_A 102 MGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGT 151 (737)
T ss_dssp CCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEEC
T ss_pred CccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEee
Confidence 244554443321222221 111 12467999987544454554
No 371
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=54.48 E-value=1.9e+02 Score=29.53 Aligned_cols=193 Identities=11% Similarity=0.056 Sum_probs=102.4
Q ss_pred CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004885 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (725)
Q Consensus 506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~ 585 (725)
+.+++..+.+|.|+-....+-...+. ...+ ... ..++.. +.+..+........++..+..|.++-+...
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~-------~~~g--~~~-~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~ 76 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGT-------GGKG--LSS-FDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAY 76 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCS-------SCCC--EEC-CCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGG
T ss_pred CCEEEEEeCCCEEEEeEHHHhhcccc-------CCCC--cee-cccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHH
Confidence 45777888999998773211110000 0001 000 012222 334444444445567777788887777653
Q ss_pred C---C------eE---EEEeccCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEECCCCC------eeeEEEecCCCCeE
Q 004885 586 S---F------TV---KSTLEEHTQWITDVRFSP---SLSRLATSSADRTVRVWDTENPD------YSLRTFTGHSTTVM 644 (725)
Q Consensus 586 ~---~------~~---i~~l~~H~~~V~~IafsP---d~~~Lasgs~DgtIrvWDl~~~~------~~l~~~~~h~~~V~ 644 (725)
. . .. ...+.. ...|.++...+ +..+|+..+..|.++...+..-. .....+.. .+.+.
T Consensus 77 ~ip~~~r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv 154 (312)
T 1suu_A 77 EIKDSSRASKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVT 154 (312)
T ss_dssp GSCC-------CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEE
T ss_pred HCCCCCccCCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEE
Confidence 2 1 11 001222 23344443332 46778888999999988774321 11122222 34565
Q ss_pred EEEEccCCCeEEEEEeCCCcEEEEECCC---------CeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885 645 SLDFHPSKEDLLCSCDNNSEIRYWSINN---------GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE 712 (725)
Q Consensus 645 sl~fsP~g~~llaSgs~Dg~I~IwDl~t---------~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~ 712 (725)
.+........++ ..+.+|.+..+.+.. |...-.+.....|..+....++..+++.+..|.++.+++.
T Consensus 155 ~~~~~~~~~~i~-l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 155 SAEIVFKDEKVI-CLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp EEEEECTTCEEE-EEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred EEEEeCCCCEEE-EEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence 555554444344 566688887887643 1122222224556776665556778888888888888774
No 372
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=52.10 E-value=2.3e+02 Score=29.65 Aligned_cols=149 Identities=8% Similarity=0.084 Sum_probs=81.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----------e-EEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004885 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESF----------T-VKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVW 624 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~----------~-~i~~l~~-H~~~V~~IafsPd~~~Lasgs~DgtIrvW 624 (725)
.|..|+.. ..+.++-..||.|+.|-.... . ....+.. ....|..|+........+....|+.|..|
T Consensus 160 ~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~w 237 (389)
T 3kci_A 160 EVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSW 237 (389)
T ss_dssp CEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEE
T ss_pred eEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEE
Confidence 56677663 455666678999999965321 0 1111111 23456677665434566667789999999
Q ss_pred ECCCCC----------eeeEEEecC-CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCC--------eeE---EEEec-
Q 004885 625 DTENPD----------YSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--------SCA---GVFKC- 681 (725)
Q Consensus 625 Dl~~~~----------~~l~~~~~h-~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~--------~~v---~~~~~- 681 (725)
-..... .....+... ...|..|+.-.. ..++-..||.|+.|-.... ... ..+..
T Consensus 238 G~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~---hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l 314 (389)
T 3kci_A 238 GDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ---FSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL 314 (389)
T ss_dssp ECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT---EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGG
T ss_pred eCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC---EEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccC
Confidence 654211 011111111 124666665433 3334467899999976421 111 11111
Q ss_pred -CCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885 682 -QSGATQMRFQPRLGRILAAAIENYISILDVE 712 (725)
Q Consensus 682 -~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~ 712 (725)
...|..|+... .+.++...||.|+.|=..
T Consensus 315 ~~~~v~~ia~G~--~h~~al~~~G~v~~wG~n 344 (389)
T 3kci_A 315 QGKKVIAIATGS--LHCVCCTEDGEVYTWGDN 344 (389)
T ss_dssp TTCCEEEEEECS--SEEEEEETTCCEEEEECC
T ss_pred CCCCEEEEEecc--CeEEEECCCCCEEEeeCC
Confidence 23466665543 466777889999999654
No 373
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=46.59 E-value=2.7e+02 Score=28.99 Aligned_cols=150 Identities=9% Similarity=0.069 Sum_probs=80.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----------eEEEEeccC-CCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004885 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESF-----------TVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVW 624 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~-----------~~i~~l~~H-~~~V~~IafsPd~~~Lasgs~DgtIrvW 624 (725)
.|..++++....+.+.-..||.|+.|-.... .....+..- ...|..|+.- ....+....||.|..|
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~w 183 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTW 183 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEe
Confidence 3555666666667777788999999965321 111122211 2256666554 3455556679999999
Q ss_pred ECCCCC---------e-eeEEEec-CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCC---------e-eE-EEEec-
Q 004885 625 DTENPD---------Y-SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---------S-CA-GVFKC- 681 (725)
Q Consensus 625 Dl~~~~---------~-~l~~~~~-h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~---------~-~v-~~~~~- 681 (725)
-..... . ....+.. ....|..|+...... ..+.-..||.|+.|-.... . .. ..+..
T Consensus 184 G~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~-~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~ 262 (389)
T 3kci_A 184 GKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDA-QTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL 262 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSC-EEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGG
T ss_pred CCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCc-EEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEeccc
Confidence 754311 0 0111111 123466666543223 3445567899999965421 1 11 11111
Q ss_pred -CCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004885 682 -QSGATQMRFQPRLGRILAAAIENYISILDV 711 (725)
Q Consensus 682 -~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl 711 (725)
...|..|+... .+.++...||.|+.|=.
T Consensus 263 ~~~~v~~v~~G~--~hs~alt~~G~v~~wG~ 291 (389)
T 3kci_A 263 TGLGVVKVECGS--QFSVALTKSGAVYTWGK 291 (389)
T ss_dssp TTSCEEEEEEET--TEEEEEETTSCEEEEEC
T ss_pred CCCcEEEEeCCC--CEEEEEeCCCeEEEEeC
Confidence 23466666543 35566678888888854
No 374
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=45.63 E-value=2.7e+02 Score=28.65 Aligned_cols=153 Identities=6% Similarity=-0.001 Sum_probs=83.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCC---------CeEEE---EeccCCCCeEEE-EEcC--CCCEEEEEeCCCeEE
Q 004885 558 VESCHFSPDGKLLATGGHDKKAVLWCTES---------FTVKS---TLEEHTQWITDV-RFSP--SLSRLATSSADRTVR 622 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~---------~~~i~---~l~~H~~~V~~I-afsP--d~~~Lasgs~DgtIr 622 (725)
+..+........|+..+..|.++-+.... |.++. .+.. ...|.++ .+.. ++.+|+.++.+|.++
T Consensus 41 l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~-~e~Iv~~~~~~~~~~~~~ll~~T~~G~iK 119 (323)
T 1wp5_A 41 LLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDR-DEEIIKAIPINDFELNGYFLFVTRNGMVK 119 (323)
T ss_dssp EEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCT-TCCEEEEEEESCTTSSCEEEEEETTSEEE
T ss_pred EEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCC-CCEEEEEEEecccCCCceEEEEeCCCeEE
Confidence 43444443455666667788876665421 22211 1222 2345544 4433 256899999999999
Q ss_pred EEECCCC-------CeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC-------CeeEEE--EecCCCeE
Q 004885 623 VWDTENP-------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GSCAGV--FKCQSGAT 686 (725)
Q Consensus 623 vWDl~~~-------~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t-------~~~v~~--~~~~~~V~ 686 (725)
...+..- ......+.. .+.+..+........++ ..+.+|.+..+.... ..-+.. +.....|.
T Consensus 120 rt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~-l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv 197 (323)
T 1wp5_A 120 KTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELF-LVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIV 197 (323)
T ss_dssp EEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEE-EEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEE
T ss_pred EeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEE-EEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEE
Confidence 9887421 111112222 24555555544444444 555678777776642 112222 22245577
Q ss_pred EEEEecCCC-EEEEEEcCCeEEEEECCC
Q 004885 687 QMRFQPRLG-RILAAAIENYISILDVET 713 (725)
Q Consensus 687 sv~fspdg~-~Lla~s~Dg~V~IwDl~t 713 (725)
++...+++. .|++.+..|..+..++..
T Consensus 198 ~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 198 SGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 776555445 788888888887777643
No 375
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=45.07 E-value=64 Score=39.57 Aligned_cols=38 Identities=16% Similarity=0.037 Sum_probs=32.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL 593 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l 593 (725)
..|.+++..++..+|++-+.|+++|||++.++.++.+.
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 35667777788899999999999999999999988775
No 376
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=43.13 E-value=65 Score=36.45 Aligned_cols=61 Identities=11% Similarity=0.151 Sum_probs=42.9
Q ss_pred CCeEEEEEccCCCeEEEEEeC-----------CCcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEE
Q 004885 641 TTVMSLDFHPSKEDLLCSCDN-----------NSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAA 701 (725)
Q Consensus 641 ~~V~sl~fsP~g~~llaSgs~-----------Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s 701 (725)
.....|.|+++|..+|++-.. ...|..++..+++....+.. ...++.++|+||+++|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 346789999998844433211 11577777777877666654 35689999999999988875
No 377
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=43.07 E-value=2.4e+02 Score=32.52 Aligned_cols=113 Identities=8% Similarity=0.021 Sum_probs=60.9
Q ss_pred EEEE-EcCCCCEEEEE-eC----CCcEEEEECCCCeEEE-Eec-cCCC------CeEEEEEcCCCCEEEEEe--------
Q 004885 559 ESCH-FSPDGKLLATG-GH----DKKAVLWCTESFTVKS-TLE-EHTQ------WITDVRFSPSLSRLATSS-------- 616 (725)
Q Consensus 559 ~~i~-fSpdg~~LaSg-s~----Dg~V~IWdl~~~~~i~-~l~-~H~~------~V~~IafsPd~~~Lasgs-------- 616 (725)
..+. ++|++++++.+ |. -.+|+++|+.+++.+. .|. .-.. ....++|. +.+.++.+.
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEIT 210 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCBC
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCCcC
Confidence 3444 78899876653 32 2379999999987652 111 0000 11344776 334444432
Q ss_pred ---CCCeEEEEECCCCC-eeeEEEecCCCCe-EEEEEccCCCe----EEEEEeCC---CcEEEEECCC
Q 004885 617 ---ADRTVRVWDTENPD-YSLRTFTGHSTTV-MSLDFHPSKED----LLCSCDNN---SEIRYWSINN 672 (725)
Q Consensus 617 ---~DgtIrvWDl~~~~-~~l~~~~~h~~~V-~sl~fsP~g~~----llaSgs~D---g~I~IwDl~t 672 (725)
....|+.|.+-++. .....|.+....+ .++..++++.+ ++++.+.+ ..+++.|...
T Consensus 211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 278 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKY 278 (711)
T ss_dssp TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSS
T ss_pred cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCC
Confidence 12478999887753 1234454433333 34555667663 45554422 3567777653
No 378
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=40.97 E-value=2.7e+02 Score=27.57 Aligned_cols=141 Identities=9% Similarity=-0.043 Sum_probs=73.5
Q ss_pred EEEEEeCCCcEEEEECCCCeE-EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE---C---CCCCeee---EEEec
Q 004885 569 LLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD---T---ENPDYSL---RTFTG 638 (725)
Q Consensus 569 ~LaSgs~Dg~V~IWdl~~~~~-i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWD---l---~~~~~~l---~~~~~ 638 (725)
.+++.+.+|.|+--....... ...++.... +..+........|+..+..|.+.-+. + +....++ ..+.
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~D~-l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~- 81 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAGDS-FKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP- 81 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTTCC-EEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC-
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCCCE-EEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC-
Confidence 455666777776555433110 012333333 33333333344555666677655543 3 2111111 0111
Q ss_pred CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC-------CeeEEEEecCCCeEEEEEe-cCCCEEEEEEcCCeEEEEE
Q 004885 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQ-PRLGRILAAAIENYISILD 710 (725)
Q Consensus 639 h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t-------~~~v~~~~~~~~V~sv~fs-pdg~~Lla~s~Dg~V~IwD 710 (725)
....|.++....++. .++.++..|.++...+.. +..+..++....+..+... .++..|+..+.+|.+..|+
T Consensus 82 ~~e~Iv~~~~~~~~~-~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 82 PGATVDHMLMESDDQ-KLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFP 160 (256)
T ss_dssp TTCCEEEEECCCTTC-EEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEEEeCCCC-EEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEE
Confidence 234566664323444 345678899999888742 3333333334456555555 3456888889999888887
Q ss_pred CC
Q 004885 711 VE 712 (725)
Q Consensus 711 l~ 712 (725)
+.
T Consensus 161 ~~ 162 (256)
T 1zvt_A 161 VS 162 (256)
T ss_dssp GG
T ss_pred HH
Confidence 64
No 379
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=40.85 E-value=3.5e+02 Score=28.51 Aligned_cols=146 Identities=10% Similarity=0.016 Sum_probs=84.0
Q ss_pred cCCCCEEEEEeCCCcEEEEECCC---------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE---CCCCC-
Q 004885 564 SPDGKLLATGGHDKKAVLWCTES---------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD---TENPD- 630 (725)
Q Consensus 564 Spdg~~LaSgs~Dg~V~IWdl~~---------~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWD---l~~~~- 630 (725)
-++..++++.+.+|.|+--.+.. +.....++. ...+..+........|+..+..|.+..+. +....
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 36778999999999999875532 222333443 44566665555667777777788665544 43221
Q ss_pred ----eeeE---EEecCCCCeEEEEEccC--CCeEEEEEeCCCcEEEEECCC-------CeeEEEEecCCCeEEEEEecCC
Q 004885 631 ----YSLR---TFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQPRL 694 (725)
Q Consensus 631 ----~~l~---~~~~h~~~V~sl~fsP~--g~~llaSgs~Dg~I~IwDl~t-------~~~v~~~~~~~~V~sv~fspdg 694 (725)
..+. .+. ....|.++....+ ....++.++..|.++...+.. |.....++....+..+......
T Consensus 83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~ 161 (370)
T 3l6v_A 83 NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGD 161 (370)
T ss_dssp TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSC
T ss_pred ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCC
Confidence 1111 122 2345555543321 222555778899999887643 2222223334556666655555
Q ss_pred CEEEEEEcCCeEEEEEC
Q 004885 695 GRILAAAIENYISILDV 711 (725)
Q Consensus 695 ~~Lla~s~Dg~V~IwDl 711 (725)
..|+..+.+|.+..|++
T Consensus 162 ~~i~l~T~~G~~irf~~ 178 (370)
T 3l6v_A 162 RDVLLFASNGKTVRFGE 178 (370)
T ss_dssp CEEEEEETTSEEEEEEG
T ss_pred ceEEEEeCCCeEEEEEc
Confidence 67888888887777764
No 380
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=40.78 E-value=4.3e+02 Score=29.63 Aligned_cols=147 Identities=12% Similarity=0.099 Sum_probs=86.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEec-------------------cCC-----CC-eEEEEEcCCCCEEEEEeC---C
Q 004885 567 GKLLATGGHDKKAVLWCTESFTVKSTLE-------------------EHT-----QW-ITDVRFSPSLSRLATSSA---D 618 (725)
Q Consensus 567 g~~LaSgs~Dg~V~IWdl~~~~~i~~l~-------------------~H~-----~~-V~~IafsPd~~~Lasgs~---D 618 (725)
..+|++|+.||.++.+|.. ++.+..|- .|. .+ +.++.+...-+.++.++. .
T Consensus 85 ~~~VyvGaNDGmLHaF~a~-G~E~wAfiP~~~l~~L~~l~~~~y~~~~h~Y~VDG~p~~~Dv~~~g~wrtvLvggmg~GG 163 (570)
T 3hx6_A 85 APRVYVGANDGMLHGFDTD-GNETFAFIPSAVFEKMHKLTARGYQGGAHQFYVDGSPVVADAFFGGAWHTVLIGSLRAGG 163 (570)
T ss_dssp CCEEEEECSSSCEEECCSS-CCCCEEECCHHHHHHCC-------CCHHHHHHHHCCCEEEEEEETTEEEEEEEEECTTSC
T ss_pred ccEEEEECCCceEEEECCC-CcEEEEECCHHHHHHHHHHhccCccccCcceecCCCCEEEEEEeCCcceEEEEEecCCCC
Confidence 3588999999999999876 54433321 121 11 233333222234455543 3
Q ss_pred CeEEEEECCCCCe--eeEEEe-------cCCCCeEEEEEccCCCeEEEEEeC------CCcEEEEECCCCeeEEEEecC-
Q 004885 619 RTVRVWDTENPDY--SLRTFT-------GHSTTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQ- 682 (725)
Q Consensus 619 gtIrvWDl~~~~~--~l~~~~-------~h~~~V~sl~fsP~g~~llaSgs~------Dg~I~IwDl~t~~~v~~~~~~- 682 (725)
+.+...|+.++.. .+-.+. ++.-.-..|.-..+++++++.++. ...|+|+|+.+|..+..+...
T Consensus 164 ~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~~~~ 243 (570)
T 3hx6_A 164 KGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLEVTG 243 (570)
T ss_dssp SEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEEECC
T ss_pred cEEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEECCCCceEEEEecCC
Confidence 4677778776432 223332 111112223344467777666653 347999999999999988742
Q ss_pred -----CCeEEEE-EecCC----CEEEEEEcCCeEEEEECCCC
Q 004885 683 -----SGATQMR-FQPRL----GRILAAAIENYISILDVETQ 714 (725)
Q Consensus 683 -----~~V~sv~-fspdg----~~Lla~s~Dg~V~IwDl~tg 714 (725)
..+..+. +..++ .+++++...|.|.-+|+...
T Consensus 244 ~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~~ 285 (570)
T 3hx6_A 244 RTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIAG 285 (570)
T ss_dssp STTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSCS
T ss_pred CCccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCCC
Confidence 2344443 33332 36888888999999999764
No 381
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=39.89 E-value=37 Score=39.44 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=30.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc
Q 004885 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE 595 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~ 595 (725)
.|.|+.+ +..+|++-+.|+++|+||+.++.++.+..-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4666666 578999999999999999999998876643
No 382
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=38.88 E-value=4e+02 Score=28.64 Aligned_cols=107 Identities=8% Similarity=0.007 Sum_probs=54.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECC--C--------CC----eeeEEEecC-CCCeEEEEEccCCCeEEEEEeCC
Q 004885 598 QWITDVRFSPSLSRLATSSADRTVRVWDTE--N--------PD----YSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNN 662 (725)
Q Consensus 598 ~~V~~IafsPd~~~Lasgs~DgtIrvWDl~--~--------~~----~~l~~~~~h-~~~V~sl~fsP~g~~llaSgs~D 662 (725)
..|..|+.. ....+.-..||.|..|-.. . .. .....+... ...|..|+.... ..+.-..+
T Consensus 148 ~~i~~va~G--~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~---hs~alt~~ 222 (473)
T 3of7_A 148 HKVVQLAAT--DNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKD---HILFLDEE 222 (473)
T ss_dssp CCEEEEEEC--SSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSS---EEEEEETT
T ss_pred CcEEEEEcc--CCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCC---eEEEEeCC
Confidence 446666554 3445555678999999751 0 00 000111111 123766765433 34455678
Q ss_pred CcEEEEECCCCee--------------EEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004885 663 SEIRYWSINNGSC--------------AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDV 711 (725)
Q Consensus 663 g~I~IwDl~t~~~--------------v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl 711 (725)
|.|+.|-....-. .........|..|+.. ..+.++...+|.|+.|-.
T Consensus 223 G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G--~~hs~alt~~G~v~~wG~ 283 (473)
T 3of7_A 223 GMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASG--ENHCFALTKDNKLVSWGL 283 (473)
T ss_dssp SCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEEC--SSEEEEEETTSCEEEEEE
T ss_pred CeEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEecC--CCeEEEEecCCCEEEeCC
Confidence 9999997643110 0000011345555543 245666677888888853
No 383
>1ofz_A Fucose-specific lectin; sugar-binding protein, AAL, aleuria aurantia lectin; HET: FUL FUC; 1.5A {Aleuria aurantia} SCOP: b.68.8.1 PDB: 1iuc_A* 1iub_A*
Probab=38.68 E-value=3.4e+02 Score=27.86 Aligned_cols=152 Identities=9% Similarity=0.111 Sum_probs=74.8
Q ss_pred CCCCeEEEEEcC-CCC--EEEEEeCCCcEE--EEECCCCeEEEEec------cCCCCeEEEEEcCC---CCE--EEEE--
Q 004885 554 STSKVESCHFSP-DGK--LLATGGHDKKAV--LWCTESFTVKSTLE------EHTQWITDVRFSPS---LSR--LATS-- 615 (725)
Q Consensus 554 H~~~V~~i~fSp-dg~--~LaSgs~Dg~V~--IWdl~~~~~i~~l~------~H~~~V~~IafsPd---~~~--Lasg-- 615 (725)
-..++.++.|.. +.. .|+.-..|+.|. +|+...... ..|. .....+.++.|..+ ... ++.-
T Consensus 59 ~~SplAAv~~~~~~~~~i~Vfy~~~dn~l~e~~~~~~~W~~-g~L~~~~~~~~~~S~lAAvs~~~~~~~~~~i~Vf~q~~ 137 (312)
T 1ofz_A 59 LFSPLAAVTWKSAQGIQIRVYCVNKDNILSEFVYDGSKWIT-GQLGSVGVKVGSNSKLAALQWGGSESAPPNIRVYYQKS 137 (312)
T ss_dssp TTCCCEEEEEEETTEEEEEEEEECTTCBEEEEEEESSCEEE-CGGGGGCCBCCTTCCCEEEEESCBTTBCCEEEEEECSC
T ss_pred cCCCceEEEecCCCCCEEEEEEECCCCcEEEEEecCCCccc-cccCCcccccCCCCcceEEEecCCCCCCCeEEEEEEec
Confidence 345788888843 222 466667788775 444322111 1121 13566788888643 233 3333
Q ss_pred -eCCCeEEE--EECCCCCeeeEEEe--cCCCCeEEEEEccCCCeEEEEEeCCCcEE--EEECCCCeeE---EEEecCCCe
Q 004885 616 -SADRTVRV--WDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIR--YWSINNGSCA---GVFKCQSGA 685 (725)
Q Consensus 616 -s~DgtIrv--WDl~~~~~~l~~~~--~h~~~V~sl~fsP~g~~llaSgs~Dg~I~--IwDl~t~~~v---~~~~~~~~V 685 (725)
+.|..|.. |+-. =..-..+. .....+.++.|.+..-.++ .-..|..|. .||-..-... .....+.++
T Consensus 138 ~~~dn~I~e~~~~g~--W~~~~~lg~~~~gT~laa~s~~~~~i~vf-~q~~dn~i~~~~~d~~~W~~~~~~~~~~p~s~l 214 (312)
T 1ofz_A 138 NLSGSSIHEYVWSGK--WTAGASFGSTAPGTGIGATAIGPGRLRIY-YQATDNKIREHCWDSNSWYVGGFSASASAGVSI 214 (312)
T ss_dssp CSTTEEEEEEEESSS--EEEEEEEEEESTTCCEEEEEEETTEEEEE-EEBTTSEEEEEEESSSCEEEEEEEEECCTTCEE
T ss_pred cCCCCeEEEEEccCC--cccCCCcCCccCCCCcceeecCCCCEEEE-EEcCCCcEEEEEecCCcceECCEecCcCCCCCc
Confidence 45666633 4422 11111111 1224578888876543344 345577774 6654221111 112224567
Q ss_pred EEEEEecC-CCEEEEEEcCCeEEEE
Q 004885 686 TQMRFQPR-LGRILAAAIENYISIL 709 (725)
Q Consensus 686 ~sv~fspd-g~~Lla~s~Dg~V~Iw 709 (725)
.++.|... .-.|+..+.|+.|.-.
T Consensus 215 Aavs~~~~~~i~lf~~~~~n~i~~~ 239 (312)
T 1ofz_A 215 AAISWGSTPNIRVYWQKGREELYEA 239 (312)
T ss_dssp EEEEETTTTEEEEEEECTTSCEEEE
T ss_pred EEEEeCCCCEEEEEEECCCCcEEEE
Confidence 77777333 2345566666666544
No 384
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=38.03 E-value=42 Score=39.01 Aligned_cols=35 Identities=9% Similarity=0.042 Sum_probs=28.5
Q ss_pred eEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 685 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 685 V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
|.++.+ +..++++.+.|.++|+||+++++|+.+..
T Consensus 224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 444433 35799999999999999999999998765
No 385
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=36.93 E-value=3.3e+02 Score=27.19 Aligned_cols=155 Identities=8% Similarity=-0.010 Sum_probs=89.7
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCe------EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004885 555 TSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFT------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (725)
Q Consensus 555 ~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~~------~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~ 627 (725)
...|..+.... +..+++.++.+|.|+...+.... ....++. ...+..+........|+..+..|.+..+.+.
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~ 145 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVR 145 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGG
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhh
Confidence 44566654421 46789999999999999875532 2222333 3455555555566688888889988877654
Q ss_pred CCC--------eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC-------CeeEEEEecCCCeEEEEEec
Q 004885 628 NPD--------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQP 692 (725)
Q Consensus 628 ~~~--------~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t-------~~~v~~~~~~~~V~sv~fsp 692 (725)
.-. .....+. ....|.++...+++.. ++..+..|.++...+.. ++-+..+...+.+..+....
T Consensus 146 eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~-ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~~ 223 (276)
T 3no0_A 146 EVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPY-LLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIK 223 (276)
T ss_dssp GSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSE-EEEEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEES
T ss_pred hCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCE-EEEEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEeC
Confidence 211 1111122 2245655554444443 44667788888887642 22233333234455554444
Q ss_pred CCCEEEEEEcCCeEEE--EECC
Q 004885 693 RLGRILAAAIENYISI--LDVE 712 (725)
Q Consensus 693 dg~~Lla~s~Dg~V~I--wDl~ 712 (725)
+...++..+.+|.+.. +++.
T Consensus 224 ~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 224 EEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp SEEEEEEEETTSCEEEEEEEGG
T ss_pred CCCEEEEEcCCCeEEEeeeCHH
Confidence 4456777788887777 7643
No 386
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=36.88 E-value=5.4e+02 Score=29.62 Aligned_cols=149 Identities=11% Similarity=0.104 Sum_probs=72.8
Q ss_pred CCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEecc------------CCCCeEEEEEcC-CCCEEEEEeCC-
Q 004885 554 STSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEE------------HTQWITDVRFSP-SLSRLATSSAD- 618 (725)
Q Consensus 554 H~~~V~~i~fSpdg-~~LaSgs~Dg~V~IWdl~~~~~i~~l~~------------H~~~V~~IafsP-d~~~Lasgs~D- 618 (725)
-.+.|.+|+++|.+ ..++++...+.|...+ +.++.-..+.. ....|.+|+++| +...++.+..+
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~ 97 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDY 97 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSC
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEeccc
Confidence 45689999999965 5666666666665544 23333222211 124589999998 34444444321
Q ss_pred ----CeEEEEECCCCCeeeEEEec-C------CC--CeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe---c-
Q 004885 619 ----RTVRVWDTENPDYSLRTFTG-H------ST--TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---C- 681 (725)
Q Consensus 619 ----gtIrvWDl~~~~~~l~~~~~-h------~~--~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~---~- 681 (725)
....||--..+...-..+.. . .+ .+..|+++|.....+..+..++.|. ...+.|+.-..+. .
T Consensus 98 ~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~-~S~DgG~TW~~~~~~~~~ 176 (763)
T 3a0f_A 98 VQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLW-RSTDRAQTWSRMNQLPDS 176 (763)
T ss_dssp TTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEE-EESSTTSSCEECTTSCCC
T ss_pred ccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEE-EECCCCcCccccccCccc
Confidence 12344433322212222211 0 11 1246888886433444444443332 2222222111111 1
Q ss_pred ---CCCeEEEEEecCC-CEEEEEEcCC
Q 004885 682 ---QSGATQMRFQPRL-GRILAAAIEN 704 (725)
Q Consensus 682 ---~~~V~sv~fspdg-~~Lla~s~Dg 704 (725)
...+..|+++|.. ..++++..++
T Consensus 177 ~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 177 STYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp SCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred CCCccceEEEEECCCCCCEEEEEEeCC
Confidence 1347788898754 3466665554
No 387
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=33.36 E-value=1.4e+02 Score=33.85 Aligned_cols=60 Identities=13% Similarity=0.146 Sum_probs=42.6
Q ss_pred CeEEEEEcCCCCEEEEEeC------------CCcEEEEECCCCeEEEEeccC-CCCeEEEEEcCCCCEEEEEe
Q 004885 557 KVESCHFSPDGKLLATGGH------------DKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSS 616 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~------------Dg~V~IWdl~~~~~i~~l~~H-~~~V~~IafsPd~~~Lasgs 616 (725)
....|+|.++|.+.++... ...|..++..+++....+.+. ...++.++|+||++.|++.-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 4678999999997774322 115666676677776666543 35689999999999887763
No 388
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=33.08 E-value=1.1e+02 Score=34.70 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=41.0
Q ss_pred eEEEEEcCCCCEEEEEeCC------------CcEEEEECCCCeEEEEeccC-CCCeEEEEEcCCCCEEEEE
Q 004885 558 VESCHFSPDGKLLATGGHD------------KKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATS 615 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~D------------g~V~IWdl~~~~~i~~l~~H-~~~V~~IafsPd~~~Lasg 615 (725)
.-.|+|++.|+++++-..+ ..+.+.+..+++..+.+.++ ...++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4679999999966655332 13455566667777666654 3679999999998887765
No 389
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=32.86 E-value=4.5e+02 Score=27.49 Aligned_cols=147 Identities=8% Similarity=-0.012 Sum_probs=77.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----------e-EEEEeccC-CCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 004885 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESF----------T-VKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRV 623 (725)
Q Consensus 556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~----------~-~i~~l~~H-~~~V~~IafsPd~~~Lasgs~DgtIrv 623 (725)
..|..|+.. ..+.+.-..||.|+.|-.... . ....+... ...|..|+.- ....+....||.|..
T Consensus 121 ~~i~~ia~G--~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G--~~hs~alt~~G~v~~ 196 (406)
T 4d9s_A 121 IRIKQIACG--DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAG--AEHTAAVTEDGDLYG 196 (406)
T ss_dssp CCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred CCEEEEEEC--hhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecC--CCeEEEEeCCCCEEE
Confidence 357777763 445666678999999975421 1 11112111 2256666554 345555567999999
Q ss_pred EECCCCC---------e-eeEEEec-CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCC---------eeE--EEEec
Q 004885 624 WDTENPD---------Y-SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---------SCA--GVFKC 681 (725)
Q Consensus 624 WDl~~~~---------~-~l~~~~~-h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~---------~~v--~~~~~ 681 (725)
|-..... . ....+.. ....|..|+.... ..+.-..+|.|+.|-.... ... ..+..
T Consensus 197 wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~---ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~ 273 (406)
T 4d9s_A 197 WGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWR---HTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEA 273 (406)
T ss_dssp EECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSS---EEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGG
T ss_pred eeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCC---cEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecc
Confidence 9654321 0 0111111 1234666654332 3344566899999975421 111 11111
Q ss_pred --CCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004885 682 --QSGATQMRFQPRLGRILAAAIENYISILDV 711 (725)
Q Consensus 682 --~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl 711 (725)
...|..|+... .+.++...||.|+.|=.
T Consensus 274 ~~~~~v~~i~~G~--~hs~alt~~G~v~~wG~ 303 (406)
T 4d9s_A 274 LSNSFISQISGGW--RHTMALTSDGKLYGWGW 303 (406)
T ss_dssp GTTSCEEEEEECS--SEEEEEETTSCEEEEEC
T ss_pred cCCCCEEEEEecC--CEEEEEcCCCeEEEeeC
Confidence 23466665432 45666677888888854
No 390
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=29.79 E-value=6.5e+02 Score=28.43 Aligned_cols=42 Identities=10% Similarity=0.036 Sum_probs=27.4
Q ss_pred CCCeEEEEEecCC--CEEEEEEcC----CeEEEEECCCCeEEEEEeCC
Q 004885 682 QSGATQMRFQPRL--GRILAAAIE----NYISILDVETQVCRLKLQVS 723 (725)
Q Consensus 682 ~~~V~sv~fspdg--~~Lla~s~D----g~V~IwDl~tg~~v~~l~GH 723 (725)
...+.-..|.|+. -.++.+..+ ..+.++|.++|+++..+.++
T Consensus 367 GDa~hv~d~dP~rpGlev~~~~E~~~~~~G~~~~DA~tG~vlw~~~~~ 414 (620)
T 2zuy_A 367 GDAMHVGDLDPSRKGLEVFQVHEDATKPYGLSLRDAGTGEILWGVHAG 414 (620)
T ss_dssp CSCEEEECSCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCS
T ss_pred CceeEEEecCCCCCCCEEEEEecCCCCCCceEEEECCCCcEEEEecCc
Confidence 3445555677873 345555443 25778999999999887643
No 391
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=29.17 E-value=5.1e+02 Score=27.02 Aligned_cols=147 Identities=8% Similarity=0.035 Sum_probs=78.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----------eEE-EEecc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004885 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESF----------TVK-STLEE-HTQWITDVRFSPSLSRLATSSADRTVRVW 624 (725)
Q Consensus 557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~----------~~i-~~l~~-H~~~V~~IafsPd~~~Lasgs~DgtIrvW 624 (725)
.|..|+.. ..+.+.-..||.|+.|-.... ... ..+.. ....|..|+.- ....+.-..|+.|..|
T Consensus 174 ~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G--~~ht~~l~~~G~v~~w 249 (406)
T 4d9s_A 174 RIKMVAAG--AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG--WRHTISVSYSGALYTY 249 (406)
T ss_dssp CEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEEC--SSEEEEEETTCCEEEE
T ss_pred cEEEEecC--CCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEEC--CCcEEEEcCCCCEEEe
Confidence 56666663 445666678999999964321 111 11111 12346566553 3445555678999999
Q ss_pred ECCCCC---------e-eeEEEec-CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCC----------ee-EEEEe--
Q 004885 625 DTENPD---------Y-SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----------SC-AGVFK-- 680 (725)
Q Consensus 625 Dl~~~~---------~-~l~~~~~-h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~----------~~-v~~~~-- 680 (725)
-..... . ....+.. ....|..|+--.. ..+.-..||.|+.|-.... .. ...+.
T Consensus 250 G~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~---hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~ 326 (406)
T 4d9s_A 250 GWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWR---HTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP 326 (406)
T ss_dssp ECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS---EEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCG
T ss_pred eCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCC---EEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEecc
Confidence 754321 0 0111111 1234666654332 3334566899999975431 11 11111
Q ss_pred cCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885 681 CQSGATQMRFQPRLGRILAAAIENYISILDVE 712 (725)
Q Consensus 681 ~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~ 712 (725)
....|..|+.-. .+.++...|+.|+.|=..
T Consensus 327 ~~~~v~~va~G~--~hs~alt~~G~v~~wG~n 356 (406)
T 4d9s_A 327 DDQKVVQVSCGW--RHTLAVTERNNVFAWGRG 356 (406)
T ss_dssp GGCCEEEEEECS--SEEEEEETTSCEEEEECC
T ss_pred CCCcEEEEEeCC--CeEEEEeCCCCEEEecCC
Confidence 134566666543 466777789999999643
No 392
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=28.19 E-value=4.8e+02 Score=26.37 Aligned_cols=152 Identities=10% Similarity=0.043 Sum_probs=83.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECC---C------CeEEE---EeccCCCCeEEEEE-c--CCCCEEEEEeCCCeEE
Q 004885 558 VESCHFSPDGKLLATGGHDKKAVLWCTE---S------FTVKS---TLEEHTQWITDVRF-S--PSLSRLATSSADRTVR 622 (725)
Q Consensus 558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~---~------~~~i~---~l~~H~~~V~~Iaf-s--Pd~~~Lasgs~DgtIr 622 (725)
+..+........|+..+..|.++-+... . |..+. .+. ....|.++.. . .++.+++..+.+|.++
T Consensus 44 l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~K 122 (307)
T 1zi0_A 44 IDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVK 122 (307)
T ss_dssp EEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEE
T ss_pred EEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEE
Confidence 4344444345566666778887666542 1 22211 122 2344555543 2 3466889999999999
Q ss_pred EEECCCC------CeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC---------CeeEEEEecCCCeEE
Q 004885 623 VWDTENP------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---------GSCAGVFKCQSGATQ 687 (725)
Q Consensus 623 vWDl~~~------~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t---------~~~v~~~~~~~~V~s 687 (725)
...+..- ......+..+ +.+..+........++ ..+.+|.+..++... |...-.+.....|.+
T Consensus 123 rt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~-l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~ 200 (307)
T 1zi0_A 123 KTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVM-LFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVS 200 (307)
T ss_dssp EEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEE-EEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEE
T ss_pred EEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEE-EECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEE
Confidence 9876421 1111122333 4555555544444444 455577776676632 111122333456777
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECC
Q 004885 688 MRFQPRLGRILAAAIENYISILDVE 712 (725)
Q Consensus 688 v~fspdg~~Lla~s~Dg~V~IwDl~ 712 (725)
+....++..+++.+..|.++-.++.
T Consensus 201 ~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 201 LIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp EECCCSSCEEEEEETTSEEEEECGG
T ss_pred EEEecCCCEEEEEEcCCceEEEEHH
Confidence 7655555678888888888887763
No 393
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=27.20 E-value=7.5e+02 Score=28.31 Aligned_cols=94 Identities=11% Similarity=0.021 Sum_probs=56.2
Q ss_pred CCCeEEEEECCCCC------eeeEEEecC--CCCeEEEEEccCCCeEEEEEeCCCc--EEEEECCCCe-eEEE-Eec--C
Q 004885 617 ADRTVRVWDTENPD------YSLRTFTGH--STTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGS-CAGV-FKC--Q 682 (725)
Q Consensus 617 ~DgtIrvWDl~~~~------~~l~~~~~h--~~~V~sl~fsP~g~~llaSgs~Dg~--I~IwDl~t~~-~v~~-~~~--~ 682 (725)
..+.|.+.|+.++. .....+..+ ...+..+.|..+ .++++...++. |+++|+.++. .+.. +.. .
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~ 395 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD--RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQ 395 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS--CEEEEEEETTEEEEEEECEETTEECCCEEECCCST
T ss_pred CCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC--EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCC
Confidence 36678899987641 123332222 335677887765 47777776764 6778876665 2333 332 3
Q ss_pred CCeEEEEEecCCCEEEEE-Ec---CCeEEEEECC
Q 004885 683 SGATQMRFQPRLGRILAA-AI---ENYISILDVE 712 (725)
Q Consensus 683 ~~V~sv~fspdg~~Lla~-s~---Dg~V~IwDl~ 712 (725)
+.+..+.+.+++..++.. ++ -..|..+|+.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 396 NAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp TCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred eEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 456666677776655444 33 2678888886
No 394
>3ct5_A Morphogenesis protein 1; cell WALL, hydrolase, infection, late protein; HET: NAG; 1.37A {Bacteriophage phi-29} PDB: 3csz_A* 3csr_A* 3ct0_A* 3ct1_A*
Probab=26.58 E-value=28 Score=32.46 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=24.3
Q ss_pred HHHHHHHHHhhCChHHHHHH-----HHhcCCCCCC
Q 004885 12 LDVYIYDYLLKRKLHASAKA-----FQTEGKVSTD 41 (725)
Q Consensus 12 L~~yiydyl~k~~~~~~A~~-----f~~e~~~~~~ 41 (725)
=..+||+||++.|+.+.|-| +..|.++.+.
T Consensus 17 ~a~~i~~~l~~~G~s~~~aAGilGN~~~ESg~nP~ 51 (159)
T 3ct5_A 17 NAQYILNYLSSNGWTKQAICGMLGNMQSESTINPG 51 (159)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCcc
Confidence 45689999999999888877 6788887654
No 395
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=26.38 E-value=54 Score=27.13 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhCChHHHHHHHHhcCCCCC
Q 004885 11 MLDVYIYDYLLKRKLHASAKAFQTEGKVST 40 (725)
Q Consensus 11 ~L~~yiydyl~k~~~~~~A~~f~~e~~~~~ 40 (725)
+++.-|-|||.-.++.=|+..|..|++++.
T Consensus 20 Li~~LVrEyLef~~l~~TlsVf~pEs~l~~ 49 (82)
T 2d68_A 20 LVASLVAEFLQFFNLDFTLAVFQPETSTLQ 49 (82)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHcCCcchHHhhhhccCCCC
Confidence 688999999999999999999999999874
No 396
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=25.83 E-value=5.8e+02 Score=26.55 Aligned_cols=148 Identities=7% Similarity=-0.054 Sum_probs=77.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE----------------------EEecc------CCCCeEEEEEc
Q 004885 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----------------------STLEE------HTQWITDVRFS 606 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i----------------------~~l~~------H~~~V~~Iafs 606 (725)
...|..|+.- ..+.+.-..||.|+.|-......+ ..+.. ....|..|+.-
T Consensus 163 ~~~i~~ia~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G 240 (413)
T 1a12_A 163 DVPVVKVASG--NDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCG 240 (413)
T ss_dssp SSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEE
T ss_pred CCCEEEEEec--CceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeC
Confidence 3457777764 345566678999999965431000 00110 12346666554
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCC----------eeeEEEecCC---CCeEEEEEccCCCeEEEEEeCCCcEEEEECCC-
Q 004885 607 PSLSRLATSSADRTVRVWDTENPD----------YSLRTFTGHS---TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN- 672 (725)
Q Consensus 607 Pd~~~Lasgs~DgtIrvWDl~~~~----------~~l~~~~~h~---~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t- 672 (725)
.. +.+....||.|..|-..... .....+.... ..|..|+.-.. ..+.-..||.|+.|-...
T Consensus 241 ~~--hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~---hs~al~~~G~v~~wG~n~~ 315 (413)
T 1a12_A 241 AY--FTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQH---HTVCMDSEGKAYSLGRAEY 315 (413)
T ss_dssp TT--EEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSS---EEEEEETTSCEEEEECCGG
T ss_pred CC--EEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccc---eEEEEeCCCCEEEeeCCCC
Confidence 33 34444578999999765321 0111111111 23666654332 333445689999997532
Q ss_pred -----C----ee--EEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004885 673 -----G----SC--AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDV 711 (725)
Q Consensus 673 -----~----~~--v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl 711 (725)
+ .. ...+..-..|..|+.-. .+.++...||.|+.|=.
T Consensus 316 GqLG~g~~~~~~~~P~~v~~l~~v~~v~~G~--~hs~alt~~G~v~~wG~ 363 (413)
T 1a12_A 316 GRLGLGEGAEEKSIPTLISRLPAVSSVACGA--SVGYAVTKDGRVFAWGM 363 (413)
T ss_dssp GTTCSCTTCCCEEEEEECCSSSSEEEEEECS--SEEEEEETTSCEEEEEC
T ss_pred CccCCCCCCccccCCEEecccCceeEEEECc--ceEEEEeCCCCEEEecC
Confidence 1 11 11111223566666543 45666678888888854
No 397
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=25.18 E-value=7.4e+02 Score=27.85 Aligned_cols=43 Identities=12% Similarity=0.210 Sum_probs=26.0
Q ss_pred cCCCCeEEEEEccCCC-eEEEEEeCCC----cEEEEECCCCeeEEEEe
Q 004885 638 GHSTTVMSLDFHPSKE-DLLCSCDNNS----EIRYWSINNGSCAGVFK 680 (725)
Q Consensus 638 ~h~~~V~sl~fsP~g~-~llaSgs~Dg----~I~IwDl~t~~~v~~~~ 680 (725)
+|...+....|.|+.. .-++.|..++ ...+.|.++|+.+....
T Consensus 361 gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~~~ 408 (591)
T 2zux_A 361 GHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILWGVY 408 (591)
T ss_dssp CCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEEC
T ss_pred CCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEEEEcC
Confidence 6777777777888742 1223444331 34567777777776654
No 398
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=23.30 E-value=3.4e+02 Score=23.01 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=14.6
Q ss_pred EEEEEccCCCeEEEEEeCCCcEEEEECCC
Q 004885 644 MSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (725)
Q Consensus 644 ~sl~fsP~g~~llaSgs~Dg~I~IwDl~t 672 (725)
..+.+..+|. +++. +.++.+ +|...+
T Consensus 59 ~~l~l~~dGN-LVl~-d~~~~~-iW~S~t 84 (113)
T 3mez_B 59 CFMRLGHSGE-LDIT-DDRLNT-VFVSNT 84 (113)
T ss_dssp CEEEECTTSC-EEEE-CTTSCE-EEECSC
T ss_pred EEEEEeCCCc-EEEE-CCCCCE-EEECCC
Confidence 3566777777 3333 334544 777654
No 399
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=21.07 E-value=9.9e+02 Score=27.50 Aligned_cols=102 Identities=13% Similarity=0.173 Sum_probs=48.9
Q ss_pred CCeEEEEEcCC-CCEEEEEeCCCc----EEEE-ECCCCeEEEEecc--C-------CCCeEEEEEcCC-CCEEEEEeCCC
Q 004885 556 SKVESCHFSPD-GKLLATGGHDKK----AVLW-CTESFTVKSTLEE--H-------TQWITDVRFSPS-LSRLATSSADR 619 (725)
Q Consensus 556 ~~V~~i~fSpd-g~~LaSgs~Dg~----V~IW-dl~~~~~i~~l~~--H-------~~~V~~IafsPd-~~~Lasgs~Dg 619 (725)
..|.+|+++|. .+.++++..+.. ..|| ..+.++.-..+.. . ...+..|+++|. ...++.+...+
T Consensus 64 ~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~ 143 (789)
T 1sqj_A 64 MGTESIALDPNNPDRLYLAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTE 143 (789)
T ss_dssp CSEEEEEEETTEEEEEEEEECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSS
T ss_pred CceeEEEECCCCCCEEEEEeCccCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccC
Confidence 46899999884 344444432211 3334 3333433322211 0 113567888884 45666665333
Q ss_pred eEEEEECCCCCeeeEEEec------CCCCeEEEEEccCCC-eEEEEE
Q 004885 620 TVRVWDTENPDYSLRTFTG------HSTTVMSLDFHPSKE-DLLCSC 659 (725)
Q Consensus 620 tIrvWDl~~~~~~l~~~~~------h~~~V~sl~fsP~g~-~llaSg 659 (725)
. ||--..+...-..+.. ....+..|.++|... .+++..
T Consensus 144 g--l~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~ 188 (789)
T 1sqj_A 144 G--IWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASA 188 (789)
T ss_dssp C--EEEESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEE
T ss_pred C--EEEECCCCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEEE
Confidence 3 3333322212222221 124588899998643 344433
No 400
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=20.72 E-value=7.4e+02 Score=25.88 Aligned_cols=155 Identities=10% Similarity=0.030 Sum_probs=83.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---------CeEEE---EeccCCCCeEEEE-EcC--CCCEEEEEeCCC
Q 004885 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTES---------FTVKS---TLEEHTQWITDVR-FSP--SLSRLATSSADR 619 (725)
Q Consensus 555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~---------~~~i~---~l~~H~~~V~~Ia-fsP--d~~~Lasgs~Dg 619 (725)
.+.+..+........|+..+..|.++.+.... |..+. .+.. ...|.++. +.. +..+|+.++..|
T Consensus 45 ~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~~-~e~Iv~~~~~~~~~~~~~ll~~T~~G 123 (370)
T 3l6v_A 45 EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLES-GERVQAVLPVREYADNRYVFMATRNG 123 (370)
T ss_dssp CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCCT-TCCEEEEEEESCCCTTCEEEEEETTS
T ss_pred CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCCC-CCEEEEEEEeccCCCCcEEEEEeCCC
Confidence 34555555555556677777788877665421 22221 1222 34455544 332 456899999999
Q ss_pred eEEEEECCCCC------eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC---------CeeEEEEecCCC
Q 004885 620 TVRVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---------GSCAGVFKCQSG 684 (725)
Q Consensus 620 tIrvWDl~~~~------~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t---------~~~v~~~~~~~~ 684 (725)
.++...+..-. .....+.. .+.+..+........++ ..+.+|.+..++... |...-.+.....
T Consensus 124 ~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~~~~i~-l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~ 201 (370)
T 3l6v_A 124 TVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDGDRDVL-LFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEE 201 (370)
T ss_dssp EEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECSCCEEE-EEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCC
T ss_pred eEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCCCceEE-EEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCE
Confidence 99998764321 11112222 34455555444444444 455567766666532 211112222445
Q ss_pred eEEEEEec-----------------------------------CCCEEEEEEcCCeEEEEECC
Q 004885 685 ATQMRFQP-----------------------------------RLGRILAAAIENYISILDVE 712 (725)
Q Consensus 685 V~sv~fsp-----------------------------------dg~~Lla~s~Dg~V~IwDl~ 712 (725)
|.++...+ ++..+++.+..|..+...+.
T Consensus 202 Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~ 264 (370)
T 3l6v_A 202 VVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLA 264 (370)
T ss_dssp EEEEEEECCC-----------------------------------CEEEEEETTSEEEEEEGG
T ss_pred EEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHH
Confidence 66655544 34578888888888777654
No 401
>1sr4_A CDT A, cytolethal distending toxin subunit A; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: b.42.2.1 PDB: 2f2f_A
Probab=20.35 E-value=1.8e+02 Score=28.27 Aligned_cols=97 Identities=14% Similarity=0.156 Sum_probs=56.4
Q ss_pred CCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecC---C
Q 004885 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR---L 694 (725)
Q Consensus 618 DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspd---g 694 (725)
+..|.||.+..+. -+-.+... .+..|-....+.+.-...+|.|+|-+.+++.|+..+.. ++........ -
T Consensus 68 g~~lt~Wa~~~~n-w~wgY~~~----ds~~FG~~r~W~i~~~~p~G~VqFvN~~TgtCL~ay~n--Gvv~~~C~~s~~~Q 140 (206)
T 1sr4_A 68 GALLTVWALAKRN-WLWAYPNI----YSQDFGNIRNWKMEPGKHREYFRFVNQSLGTCVEAYGN--GLIHDICSLDKLAQ 140 (206)
T ss_dssp SEEEEECSCSTTC-BEEEEEGG----GCGGGGGGGCEEEEECSSTTCEEEEETTTCCEEEEETT--EEEEECCCTTCGGG
T ss_pred CCEEEEEecCCCc-ceeeeccc----ccCCcCCcceeEEEeecCCCEEEEEECCCCceeeeccC--CeEEecCCCCCccc
Confidence 4456889887655 23333211 12233333233332245688999999999999988653 3422222211 1
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885 695 GRILAAAIENYISILDVETQVCRLKLQ 721 (725)
Q Consensus 695 ~~Lla~s~Dg~V~IwDl~tg~~v~~l~ 721 (725)
.+-+.-...|.|.|=++.+++|+....
T Consensus 141 ~wsiiPttnGAVQIKnvatg~CL~t~~ 167 (206)
T 1sr4_A 141 EFELLPTDSGAVVIKSVSQGRCVTYNP 167 (206)
T ss_dssp CEEEEEBTTSCEEEEETTTCCEEEECS
T ss_pred EEEEecCCCccEEEEECCCCccCCccC
Confidence 233344557888999999999998743
No 402
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=20.11 E-value=7.5e+02 Score=25.70 Aligned_cols=187 Identities=9% Similarity=-0.016 Sum_probs=0.0
Q ss_pred CcEEEEeeCCCcEEEecCCCCCCCC--CccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004885 506 DRFVDDGSLDDNVESFLSPDDADPR--DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (725)
Q Consensus 506 ~~~lasGs~D~~V~vw~s~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWd 583 (725)
....+.-..|+.|..| +. .....+-.........++..+.... |..|+. ...+.+.-..||.|+.|-
T Consensus 136 ~~hs~al~~~G~v~~w-------G~~~n~~GqlG~~~~~~~~~p~~~~~~~~--i~~va~--G~~hs~alt~~G~v~~wG 204 (423)
T 3mvd_K 136 DSHSACLLEDGRVFAW-------GSFRDSHGNMGLTIDGNKRTPIDLMEGTV--CCSIAS--GADHLVILTTAGKVFTVG 204 (423)
T ss_dssp SSEEEEEETTSCEEEE-------ECEECSSSEEESBTTBCEEEEEESSTTCC--EEEEEE--CSSEEEEEETTSCEEEEE
T ss_pred cCeEEEEeCCCeEEEE-------eCCCCCCCCcCcCCCCCCceeeEecCCCc--EEEEec--CCCeEEEEecCCeEEEee
Q ss_pred CCCC-----------------------eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE----------CCCCC
Q 004885 584 TESF-----------------------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD----------TENPD 630 (725)
Q Consensus 584 l~~~-----------------------~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWD----------l~~~~ 630 (725)
.... .+..........|..|+.. ....++.-..|+.|..|- -....
T Consensus 205 ~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g-~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~ 283 (423)
T 3mvd_K 205 CAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWAT-NYCTFMRESQTQVIWATGLNNFKQLAHETKGKE 283 (423)
T ss_dssp CCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEE-TTEEEEEETTTCCEEEEEECTTCTTSSCCTTCS
T ss_pred CCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEEC-CcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCc
Q ss_pred eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCC------------eeEEEEec-CCCeEEEEEecCCCEE
Q 004885 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG------------SCAGVFKC-QSGATQMRFQPRLGRI 697 (725)
Q Consensus 631 ~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~------------~~v~~~~~-~~~V~sv~fspdg~~L 697 (725)
............|..|+.-.. ..+.-..||.|+.|-.... .....+.. ...|..|+.... +.
T Consensus 284 ~~~~p~~~~~~~v~~ia~G~~---ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~--hs 358 (423)
T 3mvd_K 284 FALTPIKTELKDIRHIAGGQH---HTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEV--CS 358 (423)
T ss_dssp EEEEEEEECCCSEEEEEECSS---EEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETT--EE
T ss_pred eeeeeEEcCCCCeEEEEcccC---eEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCC--eE
Q ss_pred EEEEcCCeEEEE
Q 004885 698 LAAAIENYISIL 709 (725)
Q Consensus 698 la~s~Dg~V~Iw 709 (725)
++...||.|+.|
T Consensus 359 ~alt~~G~v~~w 370 (423)
T 3mvd_K 359 YAVTIDGKLYSW 370 (423)
T ss_dssp EEEETTSCEEEE
T ss_pred EEEcCCCCEEEE
Done!