BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004887
(725 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 55.8 bits (133), Expect = 9e-08, Method: Composition-based stats.
Identities = 39/83 (46%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 101 RTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFA 160
RTPL AAE G +VVKL++S ADVN D T LH AA G +VVKLL+
Sbjct: 71 RTPLHHAAENGHKEVVKLLIS-KGADVNAKDS-DGRTPLHHAAENGHK---EVVKLLISK 125
Query: 161 GADSNLTDAHGNRPFDVIVVHPN 183
GAD N +D+ G P D+ H N
Sbjct: 126 GADVNTSDSDGRTPLDLAREHGN 148
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 36/75 (48%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 101 RTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFA 160
RTPL AAE G +VVKL++S ADVN D T LH AA G +VVKLL+
Sbjct: 38 RTPLHHAAENGHKEVVKLLIS-KGADVNAK-DSDGRTPLHHAAENGH---KEVVKLLISK 92
Query: 161 GADSNLTDAHGNRPF 175
GAD N D+ G P
Sbjct: 93 GADVNAKDSDGRTPL 107
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 104 LMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGAD 163
L+ AAE G+ D VK ++ ADVN + D T LH AA G +VVKLL+ GAD
Sbjct: 8 LIEAAENGNKDRVKDLIE-NGADVNASDS-DGRTPLHHAAENGHK---EVVKLLISKGAD 62
Query: 164 SNLTDAHGNRPF 175
N D+ G P
Sbjct: 63 VNAKDSDGRTPL 74
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 39/83 (46%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 101 RTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFA 160
+TPL +AAE G +VVKL+LS AD N D T LH AA G +VVKLLL
Sbjct: 71 KTPLHLAAENGHKEVVKLLLS-QGADPNAKDS-DGKTPLHLAAENGHK---EVVKLLLSQ 125
Query: 161 GADSNLTDAHGNRPFDVIVVHPN 183
GAD N +D+ G P D+ H N
Sbjct: 126 GADPNTSDSDGRTPLDLAREHGN 148
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 36/75 (48%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 101 RTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFA 160
+TPL +AAE G +VVKL+LS AD N D T LH AA G +VVKLLL
Sbjct: 38 KTPLHLAAENGHKEVVKLLLS-QGADPNAK-DSDGKTPLHLAAENGH---KEVVKLLLSQ 92
Query: 161 GADSNLTDAHGNRPF 175
GAD N D+ G P
Sbjct: 93 GADPNAKDSDGKTPL 107
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 104 LMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGAD 163
L+ AAE G+ D VK +L ADVN + D T LH AA G +VVKLLL GAD
Sbjct: 8 LIEAAENGNKDRVKDLLE-NGADVNASDS-DGKTPLHLAAENGHK---EVVKLLLSQGAD 62
Query: 164 SNLTDAHGNRPF 175
N D+ G P
Sbjct: 63 PNAKDSDGKTPL 74
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 46/77 (59%), Gaps = 9/77 (11%)
Query: 101 RTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKS--TALHCAASGGSVNAVDVVKLLL 158
RTPL +AA G ++VVKL+L ADVN DK+ T LH AA G + +VVKLLL
Sbjct: 3 RTPLHLAARNGHLEVVKLLLE-AGADVNAK---DKNGRTPLHLAARNGHL---EVVKLLL 55
Query: 159 FAGADSNLTDAHGNRPF 175
AGAD N D +G P
Sbjct: 56 EAGADVNAKDKNGRTPL 72
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 46/77 (59%), Gaps = 9/77 (11%)
Query: 101 RTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKS--TALHCAASGGSVNAVDVVKLLL 158
RTPL +AA G ++VVKL+L ADVN DK+ T LH AA G + +VVKLLL
Sbjct: 36 RTPLHLAARNGHLEVVKLLLE-AGADVNAK---DKNGRTPLHLAARNGHL---EVVKLLL 88
Query: 159 FAGADSNLTDAHGNRPF 175
AGAD N D +G P
Sbjct: 89 EAGADVNAKDKNGRTPL 105
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 46/77 (59%), Gaps = 9/77 (11%)
Query: 101 RTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKS--TALHCAASGGSVNAVDVVKLLL 158
RTPL +AA G ++VVKL+L ADVN DK+ T LH AA G + +VVKLLL
Sbjct: 3 RTPLHLAARNGHLEVVKLLLE-AGADVNAK---DKNGRTPLHLAARNGHL---EVVKLLL 55
Query: 159 FAGADSNLTDAHGNRPF 175
AGAD N D +G P
Sbjct: 56 EAGADVNAKDKNGRTPL 72
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 36/83 (43%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 101 RTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFA 160
RTPL AA+ G ++VKL++S ADVN D T LH AA G ++VKLL+
Sbjct: 71 RTPLHYAAKEGHKEIVKLLIS-KGADVNAKDS-DGRTPLHYAAKEGHK---EIVKLLISK 125
Query: 161 GADSNLTDAHGNRPFDVIVVHPN 183
GAD N +D+ G P D+ H N
Sbjct: 126 GADVNTSDSDGRTPLDLAREHGN 148
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 101 RTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFA 160
RTPL AA+ G ++VKL++S ADVN D T LH AA G ++VKLL+
Sbjct: 38 RTPLHYAAKEGHKEIVKLLIS-KGADVNAK-DSDGRTPLHYAAKEGH---KEIVKLLISK 92
Query: 161 GADSNLTDAHGNRPF 175
GAD N D+ G P
Sbjct: 93 GADVNAKDSDGRTPL 107
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 104 LMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGAD 163
L+ AAE G+ D VK ++ ADVN + D T LH AA G ++VKLL+ GAD
Sbjct: 8 LIEAAENGNKDRVKDLIE-NGADVNASDS-DGRTPLHYAAKEGHK---EIVKLLISKGAD 62
Query: 164 SNLTDAHGNRPF 175
N D+ G P
Sbjct: 63 VNAKDSDGRTPL 74
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 38/83 (45%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 101 RTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFA 160
RTPL AAE G ++VKL+LS AD N D T LH AA G ++VKLLL
Sbjct: 71 RTPLHYAAENGHKEIVKLLLS-KGADPNAKDS-DGRTPLHYAAENGHK---EIVKLLLSK 125
Query: 161 GADSNLTDAHGNRPFDVIVVHPN 183
GAD N +D+ G P D+ H N
Sbjct: 126 GADPNTSDSDGRTPLDLAREHGN 148
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/75 (46%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 101 RTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFA 160
RTPL AAE G ++VKL+LS AD N D T LH AA G ++VKLLL
Sbjct: 38 RTPLHYAAENGHKEIVKLLLS-KGADPNAK-DSDGRTPLHYAAENGH---KEIVKLLLSK 92
Query: 161 GADSNLTDAHGNRPF 175
GAD N D+ G P
Sbjct: 93 GADPNAKDSDGRTPL 107
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/101 (36%), Positives = 57/101 (56%), Gaps = 9/101 (8%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
TPL +AA +G +++V+++L ADVN L T LH AA G + ++V++LL G
Sbjct: 49 TPLHLAAHFGHLEIVEVLLK-NGADVNAKDSLG-VTPLHLAARRGHL---EIVEVLLKNG 103
Query: 162 ADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVS 202
AD N +D+HG P + ++ +E LLKNG V+
Sbjct: 104 ADVNASDSHGFTPLHLAAKRGHLE----IVEVLLKNGADVN 140
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
TPL +AA G +++V+++L ADVN + T LH AA G + ++V++LL G
Sbjct: 82 TPLHLAARRGHLEIVEVLLK-NGADVNASDS-HGFTPLHLAAKRGHL---EIVEVLLKNG 136
Query: 162 ADSNLTDAHGNRPFDVIVVHPN 183
AD N D G FD+ + + N
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
TPL +AA G +++V+++L ADVN D T LH AA G + ++V++LL AG
Sbjct: 70 TPLHLAAREGHLEIVEVLLK-AGADVNAK-DKDGYTPLHLAAREGHL---EIVEVLLKAG 124
Query: 162 ADSNLTDAHGNRPFDVIVVHPN 183
AD N D G PFD+ + + N
Sbjct: 125 ADVNAQDKFGKTPFDLAIDNGN 146
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
TPL +AA G +++V+++L ADVN D T LH AA G + ++V++LL AG
Sbjct: 70 TPLHLAAREGHLEIVEVLLK-AGADVNAK-DKDGYTPLHLAAREGHL---EIVEVLLKAG 124
Query: 162 ADSNLTDAHGNRPFDVIV 179
AD N D G PFD+ +
Sbjct: 125 ADVNAQDKFGKTPFDLAI 142
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
TPL +AA G +++V+++L ADVN D T LH AA G + ++V++LL AG
Sbjct: 82 TPLHLAAREGHLEIVEVLLK-AGADVNAK-DKDGYTPLHLAAREGHL---EIVEVLLKAG 136
Query: 162 ADSNLTDAHGNRPFDVIVVHPN 183
AD N D G FD+ + + N
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
TPL +AA YG +++V+++L ADVN T T LH AA G + ++V++LL G
Sbjct: 82 TPLHLAALYGHLEIVEVLLK-NGADVNAT-DTYGFTPLHLAADAGHL---EIVEVLLKYG 136
Query: 162 ADSNLTDAHGNRPFDVIVVHPN 183
AD N D G FD+ + + N
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
TPL +AA+Y +++V+++L ADVN D ST LH AA G + ++V++LL G
Sbjct: 49 TPLHLAADYDHLEIVEVLLK-HGADVNAHDN-DGSTPLHLAALFGHL---EIVEVLLKHG 103
Query: 162 ADSNLTDAHGNRPFDVIVVHPN 183
AD N D G FD+ + + N
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGN 125
Score = 29.3 bits (64), Expect = 9.1, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 152 DVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVS 202
D V++L+ GAD N D GN P + + D +E LLK+G V+
Sbjct: 28 DEVRILMANGADVNANDRKGNTPLHLAADY----DHLEIVEVLLKHGADVN 74
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 87 YSFQRLSKKIVLQHR--TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAAS 144
Y Q S V H TPL A +G + VV+L+L KA VN T G + LH AA
Sbjct: 28 YLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ-HKALVN-TTGYQNDSPLHDAAK 85
Query: 145 GGSVNAVDVVKLLLFAGADSNLTDAHGNRPFD 176
G V D+VKLLL GA N + G RP D
Sbjct: 86 NGHV---DIVKLLLSYGASRNAVNIFGLRPVD 114
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
TPL +AA +G +++V+++L ADVN D T LH AA G + ++V++LL G
Sbjct: 82 TPLHLAAYWGHLEIVEVLLK-NGADVN-AMDSDGMTPLHLAAKWGYL---EIVEVLLKHG 136
Query: 162 ADSNLTDAHGNRPFDVIVVHPN 183
AD N D G FD+ + + N
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
TPL +AA +G +++V+++L ADVN ++ T LH AA G + ++V++LL G
Sbjct: 82 TPLRLAALFGHLEIVEVLLK-NGADVNAN-DMEGHTPLHLAAMFGHL---EIVEVLLKNG 136
Query: 162 ADSNLTDAHGNRPFDVIVVHPN 183
AD N D G FD+ + + N
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 9/84 (10%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNL--TCGLDKSTALHCAASGGSVNAVDVVKLLLF 159
TPL +AA+ G +++V+++L ADVN T G ST LH AA G + ++V++LL
Sbjct: 82 TPLHLAAKRGHLEIVEVLLKY-GADVNADDTIG---STPLHLAADTGHL---EIVEVLLK 134
Query: 160 AGADSNLTDAHGNRPFDVIVVHPN 183
GAD N D G FD+ + + N
Sbjct: 135 YGADVNAQDKFGKTAFDISIDNGN 158
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 13/96 (13%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
TPL +AA G +++V+++L ADVN + ST LH AA G + ++V++LL G
Sbjct: 82 TPLHLAAMTGHLEIVEVLLKY-GADVN-AFDMTGSTPLHLAADEGHL---EIVEVLLKYG 136
Query: 162 ADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKN 197
AD N D G FD+ + + N EDL K+
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN--------EDLAKS 164
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/104 (35%), Positives = 52/104 (50%), Gaps = 11/104 (10%)
Query: 85 LWYSFQRLSKKIVLQHR-----TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTAL 139
+ Y R+ ++ V+ H TPLM AA +G + VV+ +L AD L G + +AL
Sbjct: 16 MLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLL-GKGRESAL 73
Query: 140 HCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPN 183
A S G D+VK+LL G D N D +G P + VH N
Sbjct: 74 SLACSKGY---TDIVKMLLDCGVDVNEYDWNGGTPL-LYAVHGN 113
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/104 (35%), Positives = 52/104 (50%), Gaps = 11/104 (10%)
Query: 85 LWYSFQRLSKKIVLQHR-----TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTAL 139
+ Y R+ ++ V+ H TPLM AA +G + VV+ +L AD L G + +AL
Sbjct: 32 MLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLL-GKGRESAL 89
Query: 140 HCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPN 183
A S G D+VK+LL G D N D +G P + VH N
Sbjct: 90 SLACSKGY---TDIVKMLLDCGVDVNEYDWNGGTPL-LYAVHGN 129
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/104 (35%), Positives = 52/104 (50%), Gaps = 11/104 (10%)
Query: 85 LWYSFQRLSKKIVLQHR-----TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTAL 139
+ Y R+ ++ V+ H TPLM AA +G + VV+ +L AD L G + +AL
Sbjct: 14 MLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLL-GKGRESAL 71
Query: 140 HCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPN 183
A S G D+VK+LL G D N D +G P + VH N
Sbjct: 72 SLACSKGY---TDIVKMLLDCGVDVNEYDWNGGTPL-LYAVHGN 111
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
TP++ A EY VD+VKL+LS +D+N+ +++ LH AA G VD+ ++LL A
Sbjct: 113 TPMIWATEYKHVDLVKLLLS-KGSDINIRDN-EENICLHWAAFSG---CVDIAEILLAAK 167
Query: 162 ADSNLTDAHGNRPFDV 177
D + + HG+ P +
Sbjct: 168 CDLHAVNIHGDSPLHI 183
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 101 RTPLMVAAEYGSVDVVKLILSLTKADVNL-TCGLDKSTALHCAASGGSVNAVDVVKLLLF 159
R+PL AAE G VD+ + L +A N+ TC D+ T L AA N ++ VK L+
Sbjct: 12 RSPLHAAAEAGHVDICHM---LVQAGANIDTCSEDQRTPLMEAAEN---NHLEAVKYLIK 65
Query: 160 AGADSNLTDAHGN 172
AGA + DA G+
Sbjct: 66 AGALVDPKDAEGS 78
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 41/105 (39%), Gaps = 35/105 (33%)
Query: 100 HRTPLMVAAEYGSVDVVK-LILSLTKADVNLTCGLDKSTALHCAASGG------------ 146
RTPLM AAE ++ VK LI + D G ST LH AA G
Sbjct: 44 QRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEG---STCLHLAAKKGHYEVVQYLLSNG 100
Query: 147 --SVNA-----------------VDVVKLLLFAGADSNLTDAHGN 172
VN VD+VKLLL G+D N+ D N
Sbjct: 101 QMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEEN 145
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
TPL +AA +G +++V+++L ADVN + T LH AA+ G + ++V++LL G
Sbjct: 82 TPLHLAAHFGHLEIVEVLLK-NGADVNAKDD-NGITPLHLAANRGHL---EIVEVLLKYG 136
Query: 162 ADSNLTDAHGNRPFDVIVVHPN 183
AD N D G FD+ + + N
Sbjct: 137 ADVNAQDKFGKTAFDISINNGN 158
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
TPL +AA G +++V+++L ADVN T G T LH AA + +++V++LL G
Sbjct: 49 TPLHLAAMLGHLEIVEVLLK-NGADVNAT-GNTGRTPLHLAAWA---DHLEIVEVLLKHG 103
Query: 162 ADSNLTDAHGNRPFDVIVVHPN 183
AD N D G FD+ + + N
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGN 125
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
TPL +AA+ G +++V+++L ADVN + + T LH AA+ V +++V++LL G
Sbjct: 49 TPLHLAAKRGHLEIVEVLLK-HGADVNASDSWGR-TPLHLAAT---VGHLEIVEVLLEYG 103
Query: 162 ADSNLTDAHGNRPFDVIVVHPN 183
AD N D G FD+ + + N
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGN 125
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 51/112 (45%), Gaps = 32/112 (28%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAA-------------SGGSV 148
TPL +AA YG +++V+++L ADVN + ST LH AA G V
Sbjct: 49 TPLHLAATYGHLEIVEVLLK-HGADVN-AIDIXGSTPLHLAALIGHLEIVEVLLKHGADV 106
Query: 149 NAVD-----------------VVKLLLFAGADSNLTDAHGNRPFDVIVVHPN 183
NAVD +V++LL GAD N D G FD+ + + N
Sbjct: 107 NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 158
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 152 DVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVS 202
D V++L+ GAD N TDA G P + + ++ +E LLK+G V+
Sbjct: 28 DEVRILMANGADVNATDASGLTPLHLAATYGHLE----IVEVLLKHGADVN 74
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 101 RTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFA 160
TPL +AA G +V K +L KA VN D T LHCAA G N +VKLLL
Sbjct: 48 ETPLHMAARAGHTEVAKYLLQ-NKAKVNAKAK-DDQTPLHCAARIGHTN---MVKLLLEN 102
Query: 161 GADSNLTDAHGNRPFDV 177
A+ NL G+ P +
Sbjct: 103 NANPNLATTAGHTPLHI 119
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
TPL VA+ YG++ +VK +L +ADVN L S LH AA G D+V LLL G
Sbjct: 313 TPLHVASHYGNIKLVKFLLQ-HQADVNAKTKLGYS-PLHQAAQQGH---TDIVTLLLKNG 367
Query: 162 ADSNLTDAHGNRPFDV 177
A N + G P +
Sbjct: 368 ASPNEVSSDGTTPLAI 383
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
TPL VAA+YG V V +L+L A N G + T LH A N +D+VKLLL G
Sbjct: 148 TPLHVAAKYGKVRVAELLLE-RDAHPN-AAGKNGLTPLHVAVHH---NNLDIVKLLLPRG 202
Query: 162 ADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQ 207
+ +G P + V +R LL+ GGS + + +Q
Sbjct: 203 GSPHSPAWNGYTPLHIAAKQNQVEVAR----SLLQYGGSANAESVQ 244
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 102 TPLMVAAEYGSVDVVKLILSLT-KADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFA 160
TPL +AA+ V+V + +L A+ G+ T LH AA G ++V LLL
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGSANAESVQGV---TPLHLAAQEGHA---EMVALLLSK 267
Query: 161 GADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNG 198
A+ NL + G P ++ +VP + V L+K+G
Sbjct: 268 QANGNLGNKSGLTPLHLVAQEGHVPVADV----LIKHG 301
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 50/131 (38%), Gaps = 38/131 (29%)
Query: 101 RTPLMVAAEYGSVDVVKL------------------------------ILSLTKADVNLT 130
+TPL AA G ++VKL +L+L + + +
Sbjct: 81 QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA 140
Query: 131 CGLDKS-TALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRV 189
C K T LH AA G V V +LLL A N +G P V V H N+ ++
Sbjct: 141 CMTKKGFTPLHVAAKYGKVR---VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKL 197
Query: 190 SLEDLLKNGGS 200
LL GGS
Sbjct: 198 ----LLPRGGS 204
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
TPL +AA+ G ++VV+++L ADVN + T LH AA+ G + ++V++LL G
Sbjct: 82 TPLHLAADRGHLEVVEVLLK-NGADVNAN-DHNGFTPLHLAANIGHL---EIVEVLLKHG 136
Query: 162 ADSNLTDAHGNRPFDVIVVHPN 183
AD N D G FD+ + + N
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
TPL +AA+ G +++V+++L ADVN + + T LH AA+ V +++V++LL G
Sbjct: 49 TPLHLAAKRGHLEIVEVLLK-HGADVNAS-DIWGRTPLHLAAT---VGHLEIVEVLLEYG 103
Query: 162 ADSNLTDAHGNRPFDVIVVHPN 183
AD N D G FD+ + + N
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGN 125
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
TPL +AA G +++V+++L ADVN D T LH AA G + ++V++LL G
Sbjct: 82 TPLHLAAATGHLEIVEVLLK-HGADVNAYDN-DGHTPLHLAAKYGHL---EIVEVLLKHG 136
Query: 162 ADSNLTDAHGNRPFDVIVVHPN 183
AD N D G FD+ + + N
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 9/99 (9%)
Query: 104 LMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGAD 163
L+ AA G D V+++++ ADVN T D T LH AAS G +++V++LL GAD
Sbjct: 18 LLEAARAGQDDEVRILMA-NGADVNATDN-DGYTPLHLAASNGH---LEIVEVLLKNGAD 72
Query: 164 SNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVS 202
N +D G P + ++ +E LLK+G V+
Sbjct: 73 VNASDLTGITPLHLAAATGHLE----IVEVLLKHGADVN 107
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/73 (45%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
TPL AA+ G + VK +LS ADVN D +T LH AA G ++VKLLL G
Sbjct: 11 TPLHNAAKNGHAEEVKKLLS-KGADVNARSK-DGNTPLHLAAKNGHA---EIVKLLLAKG 65
Query: 162 ADSNLTDAHGNRP 174
AD N GN P
Sbjct: 66 ADVNARSKDGNTP 78
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
T LM AAE G V+V+K++L ADVN + ++ +H S + + LLL G
Sbjct: 170 TALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG 229
Query: 162 ADSNLTDAHGNRPFDVIV 179
AD N+ G P + V
Sbjct: 230 ADVNVRGERGKTPLILAV 247
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
TP ++AA GSV ++KL LS ADVN C TA AA G V A +K L G
Sbjct: 94 TPFILAAIAGSVKLLKLFLS-KGADVN-ECDFYGFTAFMEAAVYGKVKA---LKFLYKRG 148
Query: 162 ADSNL 166
A+ NL
Sbjct: 149 ANVNL 153
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 9/82 (10%)
Query: 104 LMVAAEYGSVDVVKLILSLTKADVNLTCGLDK--STALHCAASGGSVNAVDVVKLLLFAG 161
L+ AA G D V+++++ ADV DK ST LH AA G + +VVKLLL AG
Sbjct: 10 LLEAARAGQDDEVRILMA-NGADV---AAKDKNGSTPLHLAARNGHL---EVVKLLLEAG 62
Query: 162 ADSNLTDAHGNRPFDVIVVHPN 183
AD N D G FD+ + + N
Sbjct: 63 ADVNAQDKFGKTAFDISIDNGN 84
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 51/112 (45%), Gaps = 32/112 (28%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAA-------------SGGSV 148
TPL +AA YG +++V+++L ADVN + ST LH AA G V
Sbjct: 49 TPLHLAATYGHLEIVEVLLK-HGADVN-AIDIMGSTPLHLAALIGHLEIVEVLLKHGADV 106
Query: 149 NAVD-----------------VVKLLLFAGADSNLTDAHGNRPFDVIVVHPN 183
NAVD +V++LL GAD N D G FD+ + + N
Sbjct: 107 NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 158
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 152 DVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVS 202
D V++L+ GAD N TDA G P + + ++ +E LLK+G V+
Sbjct: 28 DEVRILMANGADVNATDASGLTPLHLAATYGHLE----IVEVLLKHGADVN 74
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
TPL +AA+ G +++V+++L ADVN + T LH AA G + ++V++LL G
Sbjct: 82 TPLHLAADNGHLEIVEVLLK-HGADVNAK-DYEGFTPLHLAAYDGHL---EIVEVLLKYG 136
Query: 162 ADSNLTDAHGNRPFDVIVVHPN 183
AD N D G FD+ + + N
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 9/84 (10%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNL--TCGLDKSTALHCAASGGSVNAVDVVKLLLF 159
TPL +AA+ G +++V+++L ADVN GL T LH AA G + ++V++LL
Sbjct: 82 TPLHLAADNGHLEIVEVLLKY-GADVNAQDAYGL---TPLHLAADRGHL---EIVEVLLK 134
Query: 160 AGADSNLTDAHGNRPFDVIVVHPN 183
GAD N D G FD+ + + N
Sbjct: 135 HGADVNAQDKFGKTAFDISIDNGN 158
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
TPL +AA+ G +++V+++L ADVN + T LH AA+ V +++V++LL G
Sbjct: 49 TPLHLAAKRGHLEIVEVLLK-HGADVNAR-DIWGRTPLHLAAT---VGHLEIVEVLLEYG 103
Query: 162 ADSNLTDAHGNRPFDVIVVHPN 183
AD N D G FD+ + + N
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGN 125
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
TPL +AA G +++V+++L ADVN T LH AA G + ++V++LL G
Sbjct: 82 TPLHLAAYRGHLEIVEVLLKY-GADVN-AMDYQGYTPLHLAAEDGHL---EIVEVLLKYG 136
Query: 162 ADSNLTDAHGNRPFDVIVVHPN 183
AD N D G FD+ + + N
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
TPL +AA+ G +++V+++L ADVN T LH AA G + ++V++LL G
Sbjct: 49 TPLHLAAQLGHLEIVEVLLKY-GADVNAEDNFG-ITPLHLAAIRGHL---EIVEVLLKHG 103
Query: 162 ADSNLTDAHGNRPFDVIVVHPN 183
AD N D G FD+ + + N
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGN 125
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 9/80 (11%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKS--TALHCAASGGSVNAVDVVKLLLF 159
TPL +AA G +++V+++L ADVN D++ T LH AA G + ++V++LL
Sbjct: 74 TPLHLAAYDGHLEIVEVLLK-HGADVN---AYDRAGWTPLHLAALSGQL---EIVEVLLK 126
Query: 160 AGADSNLTDAHGNRPFDVIV 179
GAD N DA G FD+ +
Sbjct: 127 HGADVNAQDALGLTAFDISI 146
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
T LM AAE G V+V+K++L ADVN + ++ +H S + + LLL G
Sbjct: 150 TALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG 209
Query: 162 ADSNLTDAHGNRPF 175
AD N+ G P
Sbjct: 210 ADVNVRGERGKTPL 223
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
TP ++AA GSV ++KL LS ADVN C TA AA G V A +K L G
Sbjct: 74 TPFLLAAIAGSVKLLKLFLS-KGADVN-ECDFYGFTAFMEAAVYGKVKA---LKFLYKRG 128
Query: 162 ADSNL 166
A+ NL
Sbjct: 129 ANVNL 133
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 32/109 (29%)
Query: 101 RTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAAS-------------GGS 147
RTPL +AA G +++V+++L ADVN + +T LH AAS G
Sbjct: 36 RTPLHMAAAVGHLEIVEVLLR-NGADVN-AVDTNGTTPLHLAASLGHLEIVEVLLKYGAD 93
Query: 148 VNAVD-----------------VVKLLLFAGADSNLTDAHGNRPFDVIV 179
VNA D +V++LL GAD N D G FD+ +
Sbjct: 94 VNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 142
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 104 LMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGAD 163
L+ AA G D V+++++ ADVN D T LH AA G + ++V++LL AGAD
Sbjct: 6 LLEAARAGQDDEVRILMA-NGADVNAK-DKDGYTPLHLAAREGHL---EIVEVLLKAGAD 60
Query: 164 SNLTDAHGNRPFDVIVVHPN 183
N D G FD+ + + N
Sbjct: 61 VNAQDKFGKTAFDISIDNGN 80
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 11/99 (11%)
Query: 103 PLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGA 162
PL A YG +V +L++ A VN+ L K T LH AA+ G ++ KLLL GA
Sbjct: 80 PLHNACSYGHYEVAELLVK-HGAVVNVA-DLWKFTPLHEAAAKGKY---EICKLLLQHGA 134
Query: 163 DSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSV 201
D + GN P D+ V D ++DLL+ ++
Sbjct: 135 DPTKKNRDGNTPLDL------VKDGDTDIQDLLRGDAAL 167
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 11/99 (11%)
Query: 103 PLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGA 162
PL A YG +V +L++ A VN+ L K T LH AA+ G ++ KLLL GA
Sbjct: 78 PLHNACSYGHYEVAELLVK-HGAVVNVA-DLWKFTPLHEAAAKGKY---EICKLLLQHGA 132
Query: 163 DSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSV 201
D + GN P D+ V D ++DLL+ ++
Sbjct: 133 DPTKKNRDGNTPLDL------VKDGDTDIQDLLRGDAAL 165
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 11/99 (11%)
Query: 103 PLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGA 162
PL A YG +V +L++ A VN+ L K T LH AA+ G ++ KLLL GA
Sbjct: 82 PLHNACSYGHYEVAELLVK-HGAVVNVA-DLWKFTPLHEAAAKGKY---EICKLLLQHGA 136
Query: 163 DSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSV 201
D + GN P D+ V D ++DLL+ ++
Sbjct: 137 DPTKKNRDGNTPLDL------VKDGDTDIQDLLRGDAAL 169
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 104 LMVAAEYGSVDVVKLILSLTKADVNLTCGLDK--STALHCAASGGSVNAVDVVKLLLFAG 161
L+ AA G D V+++++ ADV DK ST LH AA G + +VVKLLL AG
Sbjct: 28 LLEAARAGQDDEVRILMA-NGADV---AAKDKNGSTPLHLAARNGHL---EVVKLLLEAG 80
Query: 162 ADSNLTDAHGNRPFDVIVVHPN 183
AD D G FD+ + + N
Sbjct: 81 ADVXAQDKFGKTAFDISIDNGN 102
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
TPL +A +G +++V+++L ADVN + T LH AA G + ++ ++LL G
Sbjct: 49 TPLYLATAHGHLEIVEVLLK-NGADVNAVDAIG-FTPLHLAAFIGHL---EIAEVLLKHG 103
Query: 162 ADSNLTDAHGNRPFDVIVVHPN 183
AD N D G FD+ + + N
Sbjct: 104 ADVNAQDKFGKTAFDISIGNGN 125
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 102 TPLMVAA-EYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFA 160
TPLM AA SVD +L+L+ VNL K+TALH A G+ V+ LLL A
Sbjct: 144 TPLMWAAYRTHSVDPTRLLLTFN-VSVNLGDKYHKNTALHWAVLAGNTT---VISLLLEA 199
Query: 161 GADSNLTDAHGNRPFDVIVVHPNV 184
GA+ + + G D+ NV
Sbjct: 200 GANVDAQNIKGESALDLAKQRKNV 223
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
TPL +AA +++V+++L ADVN + + T LH A G + ++V++LL G
Sbjct: 49 TPLHLAAMNDHLEIVEVLLK-NGADVNAIDAIGE-TPLHLVAMYGHL---EIVEVLLKHG 103
Query: 162 ADSNLTDAHGNRPFDVIVVHPN 183
AD N D G FD+ + + N
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGN 125
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 101 RTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFA 160
RTPL +AA G ++V+++L ADVN L K TALH A N +VV+LL+
Sbjct: 68 RTPLHMAASEGHANIVEVLLK-HGADVNAKDML-KMTALHWATEH---NHQEVVELLIKY 122
Query: 161 GADSNLTDAHGNRPFDVIVVHPN 183
GAD + FD+ + + N
Sbjct: 123 GADVHTQSKFCKTAFDISIDNGN 145
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 19/74 (25%)
Query: 102 TPLMVAAEYGSVDVVKLIL-------SLTKADVNLTCGLDKSTALHCAASGGSVNAVDVV 154
+PL +AA+YG +++L + TK D T LH AAS G N +V
Sbjct: 36 SPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD---------RTPLHMAASEGHAN---IV 83
Query: 155 KLLLFAGADSNLTD 168
++LL GAD N D
Sbjct: 84 EVLLKHGADVNAKD 97
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
T L +A+ +G + +V+L++SL ADVN + TALH A + D+V LLL G
Sbjct: 116 TCLHLASIHGYLGIVELLVSL-GADVNAQEPCNGRTALHLAVD---LQNPDLVSLLLKCG 171
Query: 162 ADSNLTDAHGNRPFDVIVVHPN 183
AD N G P+ + P+
Sbjct: 172 ADVNRVTYQGYSPYQLTWGRPS 193
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
TPL+ A+ +G ++ V+ +L AD ++ ++ +AL A++GG D+V LLL
Sbjct: 38 TPLIWASAFGEIETVRFLLEW-GADPHILAK-ERESALSLASTGGYT---DIVGLLLERD 92
Query: 162 ADSNLTDAHGNRPFDVIVVHPN 183
D N+ D +G P + VH N
Sbjct: 93 VDINIYDWNGGTPL-LYAVHGN 113
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
T L +A+ +G + +V+L++SL ADVN + TALH A + D+V LLL G
Sbjct: 119 TCLHLASIHGYLGIVELLVSL-GADVNAQEPCNGRTALHLAVD---LQNPDLVSLLLKCG 174
Query: 162 ADSNLTDAHGNRPFDVIVVHPN 183
AD N G P+ + P+
Sbjct: 175 ADVNRVTYQGYSPYQLTWGRPS 196
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 37.0 bits (84), Expect = 0.038, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
TPL+ A+ +G ++ V+ +L AD ++ ++ +AL A++GG D+V LLL
Sbjct: 38 TPLIWASAFGEIETVRFLLEW-GADPHILAK-ERESALSLASTGGYT---DIVGLLLERD 92
Query: 162 ADSNLTDAHGNRPF 175
D N+ D +G P
Sbjct: 93 VDINIYDWNGGTPL 106
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 36.6 bits (83), Expect = 0.045, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 13/93 (13%)
Query: 97 VLQHRTP------------LMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAA- 143
+L+H TP L+ AAE G +D VKL+L + D++ + +
Sbjct: 91 MLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGL 150
Query: 144 SGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFD 176
G+ D+VKLL+ GAD ++ D G D
Sbjct: 151 REGNQLYQDIVKLLMENGADQSIKDNSGRTAMD 183
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
PL A YG +V +L+L A VN L + T LH AAS N V+V LLL G
Sbjct: 93 VPLHNACSYGHYEVTELLLK-HGACVN-AMDLWQFTPLHEAASK---NRVEVCSLLLSHG 147
Query: 162 ADSNLTDAHGNRPFDV 177
AD L + HG D+
Sbjct: 148 ADPTLVNCHGKSAVDM 163
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 101 RTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLD-KSTALHCAASGGSVNAVDVVKLLLF 159
+ L+ AA G+ + KL+ LT +VN KST LH AA N V +V+LLL
Sbjct: 25 KDELLEAARSGNEE--KLMALLTPLNVNCHASDGRKSTPLHLAAG---YNRVRIVQLLLQ 79
Query: 160 AGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDEL 206
GAD + D G P + + + E LLK+G V+ +L
Sbjct: 80 HGADVHAKDKGGLVPLHNACSYGHYEVT----ELLLKHGACVNAMDL 122
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 101 RTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFA 160
R+PL+ A E S+ +V+L+L A+VN S+ALH A+ G + +V+ L+ +
Sbjct: 151 RSPLIHAVENNSLSMVQLLLQ-HGANVNAQM-YSGSSALHSASGRG---LLPLVRTLVRS 205
Query: 161 GADSNLTDAHGNRPFDV 177
GADS+L + H + P V
Sbjct: 206 GADSSLKNCHNDTPLMV 222
>pdb|1RGO|A Chain A, Structural Basis For Recognition Of The Mrna Class Ii Au-
Rich Element By The Tandem Zinc Finger Domain Of Tis11d
Length = 70
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 314 PDHRKGACSRGDMCEYAHGIFE--SWLHPAQYRTKLCKD----GTSCMRRVCFFAHALDE 367
P G C G+ C++AHG E S +Y+T+LC+ G C F H DE
Sbjct: 11 PFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE 70
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
+PL A G VV++++ + A +N+ D T LH AAS G D+V+ LL
Sbjct: 36 SPLHWACREGRSAVVEMLI-MRGARINVMNRGD-DTPLHLAASHGHR---DIVQKLLQYK 90
Query: 162 ADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVS 202
AD N + HGN P +V+ EDL+ NG VS
Sbjct: 91 ADINAVNEHGNVPLHYACFWGQ---DQVA-EDLVANGALVS 127
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
+PL A G VV++++ + A +N+ D T LH AAS G D+V+ LL
Sbjct: 41 SPLHWACREGRSAVVEMLI-MRGARINVMNRGD-DTPLHLAASHGHR---DIVQKLLQYK 95
Query: 162 ADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVS 202
AD N + HGN P +V+ EDL+ NG VS
Sbjct: 96 ADINAVNEHGNVPLHYACFWGQ---DQVA-EDLVANGALVS 132
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNL---TCGLDKSTALHCAASGGSVNAVDVVKLLL 158
TPL VA + ++V+L+ AD+N TCG T LH A A V++LLL
Sbjct: 160 TPLHVAVIHKDAEMVRLLRD-AGADLNKPEPTCG---RTPLHLAVE---AQAASVLELLL 212
Query: 159 FAGADSNLTDAHGNRPFDVIVVHPN 183
AGAD G P ++ PN
Sbjct: 213 KAGADPTARMYGGRTPLGSALLRPN 237
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNL---TCGLDKSTALHCAASGGSVNAVDVVKLLL 158
TPL VA + ++V+L+ AD+N TCG T LH A A V++LLL
Sbjct: 160 TPLHVAVIHKDAEMVRLLRD-AGADLNKPEPTCG---RTPLHLAVE---AQAASVLELLL 212
Query: 159 FAGADSNLTDAHGNRPFDVIVVHPN 183
AGAD G P ++ PN
Sbjct: 213 KAGADPTARMYGGRTPLGSALLRPN 237
>pdb|3D2N|A Chain A, Crystal Structure Of Mbnl1 Tandem Zinc Finger 1 And 2
Domain
Length = 83
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
Query: 273 FKIRPCSRAYSHDWTECPFAHPGENARRRDPRKFHYSCMPCPDHRKGACSRGDMCEYAH 331
F+ CSR TEC FAHP ++ + + R + C D KG CSR + C+Y H
Sbjct: 15 FQRGTCSRPD----TECKFAHPSKSCQVENGR-----VIACFDSLKGRCSR-ENCKYLH 63
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
TPL +A E VK +L + ADVN G D + LH A S ++ LL+ G
Sbjct: 136 TPLYLACENQQRACVKKLLE-SGADVNQGKGQD--SPLHAVARTASE---ELACLLMDFG 189
Query: 162 ADSNLTDAHGNRPFDVIVVHPNVPDSRVSLE 192
AD+ +A G RP + +V P P +++ LE
Sbjct: 190 ADTQAKNAEGKRPVE--LVPPESPLAQLFLE 218
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 136 STALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLL 195
+TA+H AA+ G++ +V +LLF A +N+ D GN P + V +++ L+
Sbjct: 140 ATAMHRAAAKGNLK---MVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF----LV 192
Query: 196 KNGGSV 201
G S+
Sbjct: 193 TQGASI 198
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 136 STALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLL 195
+TA+H AA+ G++ +V +LLF A +N+ D GN P + V +++ L+
Sbjct: 140 ATAMHRAAAKGNLK---MVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF----LV 192
Query: 196 KNGGSV 201
G S+
Sbjct: 193 TQGASI 198
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 33.5 bits (75), Expect = 0.47, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 135 KSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDL 194
++TA+H AA+ G++ ++ +LL+ A +N+ D GN P +H + RV L
Sbjct: 140 EATAMHRAAAKGNLK---MIHILLYYKASTNIQDTEGNTP-----LHLACDEERVEEAKL 191
Query: 195 LKNGGSVSFDE 205
L + G+ + E
Sbjct: 192 LVSQGASIYIE 202
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 33.5 bits (75), Expect = 0.48, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 135 KSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDL 194
++TA+H AA+ G++ ++ +LL+ A +N+ D GN P +H + RV L
Sbjct: 139 EATAMHRAAAKGNLK---MIHILLYYKASTNIQDTEGNTP-----LHLACDEERVEEAKL 190
Query: 195 LKNGGSVSFDE 205
L + G+ + E
Sbjct: 191 LVSQGASIYIE 201
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
TPL +A E VK +L + ADVN G D + LH S ++ LL+ G
Sbjct: 192 TPLYLACENQQRACVKKLLE-SGADVNQGKGQD--SPLHAVVRTASE---ELACLLMDFG 245
Query: 162 ADSNLTDAHGNRPFDVIVVHPNVPDSRVSLE 192
AD+ +A G RP + +V P P +++ LE
Sbjct: 246 ADTQAKNAEGKRPVE--LVPPESPLAQLFLE 274
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
T L A G D+V+ + + ++N L TALH AA G D+V+LLL G
Sbjct: 108 TALYWACHGGHKDIVEXLFTQPNIELNQQNKLG-DTALHAAAWKGYA---DIVQLLLAKG 163
Query: 162 ADSNLTDAHGNRPFD 176
A ++L + FD
Sbjct: 164 ARTDLRNIEKKLAFD 178
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 101 RTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKS--TALHCAASGGSVNAVDVVKLLL 158
R PL AA+ G +++++ +L L AD+N DK T L A G V+ V KLLL
Sbjct: 41 RKPLHYAADCGQLEILEFLL-LKGADINAP---DKHHITPLLSAVYEGHVSCV---KLLL 93
Query: 159 FAGADSNLTDAHGNRPFD 176
GAD + G F+
Sbjct: 94 SKGADKTVKGPDGLTAFE 111
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTC-GLDKSTALHCAASGGSVNAVDVVKLLLFA 160
+PL VAA +G D++ L+L K N D++ LH A G VVK LL +
Sbjct: 88 SPLHVAALHGRADLIPLLL---KHGANAGARNADQAVPLHLACQQGHFQ---VVKCLLDS 141
Query: 161 GADSNLTDAHGNRPF 175
A N D GN P
Sbjct: 142 NAKPNKKDLSGNTPL 156
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 102 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161
PL +A + G VVK +L + A N L +T L A SGG ++V LLL G
Sbjct: 121 VPLHLACQQGHFQVVKCLLD-SNAKPNKK-DLSGNTPLIYACSGGHH---ELVALLLQHG 175
Query: 162 ADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSF 203
A N ++ GN V+ +V +E LL +G SV
Sbjct: 176 ASINASNNKGNTALHEAVIEKHV----FVVELLLLHGASVQV 213
>pdb|2CQE|A Chain A, Solution Structure Of The Zinc-Finger Domain In Kiaa1064
Protein
Length = 98
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 12/61 (19%)
Query: 295 GENARRRDPRKFHYSCMPCPDHRKGACSRGDMCEYAHGIFESWLHPAQYRTKLCKDGTSC 354
GE ++R+ KF+ + G C+R + C Y HG F L+ + T C +G C
Sbjct: 7 GELPKKRELCKFYIT---------GFCARAENCPYMHGDFPCKLY---HTTGNCINGDDC 54
Query: 355 M 355
M
Sbjct: 55 M 55
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 140 HCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPN 183
H + V + ++V+LL+ GAD D+ GN ++++ PN
Sbjct: 123 HPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPN 166
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 98 LQHRTPLMVAAEYGSVDVVKLILSLTKADVN 128
L+ TPL+VA++YG ++VK +L L AD++
Sbjct: 132 LEGETPLIVASKYGRSEIVKKLLEL-GADIS 161
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 143 ASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVV 180
A+ + V+ V+ LL AGAD N + G RP V+++
Sbjct: 17 ATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,974,971
Number of Sequences: 62578
Number of extensions: 776758
Number of successful extensions: 1714
Number of sequences better than 100.0: 80
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 1598
Number of HSP's gapped (non-prelim): 136
length of query: 725
length of database: 14,973,337
effective HSP length: 106
effective length of query: 619
effective length of database: 8,340,069
effective search space: 5162502711
effective search space used: 5162502711
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)