Query 004887
Match_columns 725
No_of_seqs 663 out of 3367
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 08:51:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004887.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004887hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyh_A HN1;, notch 1, ankyrin 100.0 4.5E-31 1.5E-35 271.1 6.7 213 4-255 2-242 (253)
2 4b93_B Ankyrin repeat domain-c 100.0 8.6E-30 2.9E-34 266.3 14.7 186 5-257 45-240 (269)
3 3b7b_A Euchromatic histone-lys 100.0 1.6E-29 5.6E-34 254.9 15.4 211 3-251 2-225 (237)
4 1k1a_A B-cell lymphoma 3-encod 100.0 1.2E-29 4.1E-34 255.8 14.1 205 6-257 3-237 (241)
5 1wdy_A 2-5A-dependent ribonucl 100.0 2E-29 6.7E-34 258.9 14.7 227 3-263 29-280 (285)
6 1n11_A Ankyrin; clathrin, BAND 100.0 1.2E-29 4.1E-34 280.0 13.7 149 99-256 211-364 (437)
7 1oy3_D Transcription factor in 100.0 1.6E-29 5.6E-34 260.3 13.2 192 5-215 2-265 (282)
8 2xai_A ASB-9, ankyrin repeat a 100.0 7.6E-29 2.6E-33 255.9 15.6 196 11-247 2-210 (261)
9 3ljn_A Hypothetical protein; a 100.0 1.2E-29 4.1E-34 273.6 9.5 206 3-258 11-266 (364)
10 1n11_A Ankyrin; clathrin, BAND 100.0 6.3E-29 2.2E-33 274.2 14.5 240 3-255 104-396 (437)
11 1oy3_D Transcription factor in 100.0 1.7E-28 5.8E-33 252.8 16.7 170 5-181 38-268 (282)
12 2f8y_A Notch homolog 1, transl 100.0 1.3E-28 4.3E-33 246.1 14.4 188 3-257 15-212 (223)
13 4g8k_A 2-5A-dependent ribonucl 100.0 1.2E-28 4E-33 263.0 14.1 243 10-264 23-301 (337)
14 3aji_A 26S proteasome non-ATPa 100.0 9E-29 3.1E-33 248.5 12.3 185 5-256 33-225 (231)
15 2xai_A ASB-9, ankyrin repeat a 100.0 2.5E-28 8.6E-33 252.0 16.0 205 2-247 26-249 (261)
16 2rfa_A Transient receptor pote 100.0 7.1E-29 2.4E-33 249.8 11.2 196 11-258 2-219 (232)
17 3d9h_A CDNA FLJ77766, highly s 100.0 3.4E-28 1.2E-32 255.0 16.7 200 5-245 52-264 (285)
18 3utm_A Tankyrase-1; tankyrase, 100.0 4.3E-28 1.5E-32 256.8 17.0 207 2-243 48-320 (351)
19 4gpm_A Engineered protein OR26 100.0 8.2E-28 2.8E-32 234.7 16.1 151 14-203 6-164 (169)
20 2fo1_E LIN-12 protein; beta-ba 100.0 6.7E-29 2.3E-33 270.5 8.3 207 3-257 115-367 (373)
21 2dzn_A Probable 26S proteasome 99.9 1.4E-27 4.7E-32 239.0 15.8 197 12-247 2-219 (228)
22 1k1a_A B-cell lymphoma 3-encod 99.9 6.8E-27 2.3E-31 235.6 18.8 182 2-199 36-240 (241)
23 1ikn_D Protein (I-kappa-B-alph 99.9 2.8E-28 9.6E-33 246.7 6.8 186 6-258 2-206 (236)
24 1yyh_A HN1;, notch 1, ankyrin 99.9 3.8E-27 1.3E-31 241.8 15.2 175 3-216 47-231 (253)
25 2etb_A Transient receptor pote 99.9 5.7E-28 2E-32 247.4 8.3 201 11-258 1-243 (256)
26 3utm_A Tankyrase-1; tankyrase, 99.9 2.2E-27 7.6E-32 251.4 12.7 224 2-247 81-350 (351)
27 1wdy_A 2-5A-dependent ribonucl 99.9 1.6E-27 5.3E-32 244.7 11.1 210 10-257 3-240 (285)
28 3b7b_A Euchromatic histone-lys 99.9 1.6E-26 5.4E-31 233.0 17.3 177 2-217 34-219 (237)
29 1s70_B 130 kDa myosin-binding 99.9 4.9E-27 1.7E-31 245.0 13.8 191 9-245 37-274 (299)
30 3hra_A Ankyrin repeat family p 99.9 4.7E-27 1.6E-31 230.8 12.6 186 9-256 2-198 (201)
31 3eu9_A Huntingtin-interacting 99.9 2.7E-27 9.4E-32 237.1 11.0 216 4-257 1-231 (240)
32 3ljn_A Hypothetical protein; a 99.9 1.9E-27 6.3E-32 256.4 10.4 218 2-256 43-309 (364)
33 3d9h_A CDNA FLJ77766, highly s 99.9 3.6E-26 1.2E-30 239.6 18.7 174 2-216 82-263 (285)
34 2pnn_A Transient receptor pote 99.9 1.8E-27 6.3E-32 246.3 8.6 212 2-258 3-255 (273)
35 1ikn_D Protein (I-kappa-B-alph 99.9 9.7E-27 3.3E-31 235.4 12.5 167 3-202 36-211 (236)
36 2dzn_A Probable 26S proteasome 99.9 6.1E-26 2.1E-30 227.0 17.4 174 6-216 30-216 (228)
37 3kea_A K1L; tropism, ANK repea 99.9 5.4E-27 1.8E-31 246.1 8.6 193 4-266 23-225 (285)
38 2vge_A RELA-associated inhibit 99.9 7.9E-27 2.7E-31 237.9 9.5 197 20-253 1-205 (229)
39 3jxi_A Vanilloid receptor-rela 99.9 2.5E-27 8.6E-32 242.9 5.6 207 8-257 1-246 (260)
40 4b93_B Ankyrin repeat domain-c 99.9 2.3E-26 7.8E-31 240.3 11.4 163 2-202 76-246 (269)
41 1sw6_A Regulatory protein SWI6 99.9 5.6E-26 1.9E-30 243.2 13.1 175 2-247 120-327 (327)
42 3aji_A 26S proteasome non-ATPa 99.9 6.4E-26 2.2E-30 227.6 12.1 188 9-263 3-199 (231)
43 2fo1_E LIN-12 protein; beta-ba 99.9 9.5E-26 3.2E-30 245.6 14.2 184 2-201 156-372 (373)
44 2rfm_A Putative ankyrin repeat 99.9 1.6E-25 5.6E-30 219.5 13.9 155 5-198 28-190 (192)
45 1ycs_B 53BP2, P53BP2; ankyrin 99.9 6.2E-26 2.1E-30 231.5 10.4 180 10-248 3-193 (239)
46 3hra_A Ankyrin repeat family p 99.9 7.2E-25 2.4E-29 215.3 15.9 160 3-198 30-201 (201)
47 4gpm_A Engineered protein OR26 99.9 1.3E-25 4.5E-30 219.0 10.5 154 41-259 6-159 (169)
48 3v30_A DNA-binding protein rfx 99.9 3.2E-25 1.1E-29 213.4 11.7 161 12-211 2-171 (172)
49 4g8k_A 2-5A-dependent ribonucl 99.9 1.9E-25 6.6E-30 238.1 10.9 238 2-260 48-325 (337)
50 2rfa_A Transient receptor pote 99.9 4.9E-25 1.7E-29 221.6 13.2 176 2-203 27-225 (232)
51 2f8y_A Notch homolog 1, transl 99.9 2.2E-24 7.5E-29 215.2 17.8 162 2-202 48-218 (223)
52 1s70_B 130 kDa myosin-binding 99.9 4.3E-26 1.5E-30 237.9 4.7 187 38-261 39-257 (299)
53 1ihb_A P18-INK4C(INK6), cyclin 99.9 1.9E-24 6.4E-29 205.3 13.3 151 10-200 3-162 (162)
54 2rfm_A Putative ankyrin repeat 99.9 5E-25 1.7E-29 216.1 8.9 161 29-256 27-187 (192)
55 2y1l_E Darpin-8.4; hydrolase-i 99.9 4.8E-24 1.6E-28 205.3 15.1 151 9-198 11-169 (169)
56 3v31_A Ankyrin repeat family A 99.9 1.8E-24 6.2E-29 207.0 12.0 153 11-202 2-162 (167)
57 2etb_A Transient receptor pote 99.9 9.2E-25 3.2E-29 223.5 10.1 176 2-201 29-247 (256)
58 4hbd_A KN motif and ankyrin re 99.9 2.5E-24 8.5E-29 225.0 13.5 160 5-198 104-273 (276)
59 3eu9_A Huntingtin-interacting 99.9 9.8E-24 3.4E-28 211.2 15.6 178 2-216 32-218 (240)
60 3f6q_A Integrin-linked protein 99.9 7.9E-24 2.7E-28 205.5 13.8 159 10-207 3-170 (179)
61 3kea_A K1L; tropism, ANK repea 99.9 3.4E-24 1.2E-28 224.8 11.6 162 2-205 54-225 (285)
62 2pnn_A Transient receptor pote 99.9 2.6E-24 8.9E-29 222.6 10.0 184 7-210 49-269 (273)
63 4hbd_A KN motif and ankyrin re 99.9 4.1E-25 1.4E-29 230.9 3.2 178 12-256 76-270 (276)
64 3twr_A Tankyrase-2; ankyrin re 99.9 1.6E-23 5.6E-28 200.0 10.8 152 8-199 4-164 (165)
65 3jxi_A Vanilloid receptor-rela 99.9 1.2E-23 4.1E-28 215.5 10.5 164 3-202 33-252 (260)
66 3v31_A Ankyrin repeat family A 99.9 8.3E-24 2.9E-28 202.4 8.6 155 38-257 2-156 (167)
67 1awc_B Protein (GA binding pro 99.9 4.6E-23 1.6E-27 194.9 13.5 143 12-194 2-152 (153)
68 3twr_A Tankyrase-2; ankyrin re 99.9 1.3E-23 4.6E-28 200.6 9.1 153 38-255 7-159 (165)
69 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.6E-23 5.5E-28 201.6 9.6 154 38-256 13-166 (169)
70 1awc_B Protein (GA binding pro 99.9 1.8E-23 6.3E-28 197.7 9.0 149 39-253 2-150 (153)
71 3v30_A DNA-binding protein rfx 99.9 8.1E-24 2.8E-28 203.5 5.6 155 39-258 2-157 (172)
72 3f6q_A Integrin-linked protein 99.9 2.6E-23 9E-28 201.7 8.4 156 38-258 4-160 (179)
73 1sw6_A Regulatory protein SWI6 99.9 6.9E-25 2.4E-29 234.8 -3.7 173 87-264 117-311 (327)
74 1ihb_A P18-INK4C(INK6), cyclin 99.9 1.9E-23 6.6E-28 198.3 5.0 154 38-257 4-158 (162)
75 1bd8_A P19INK4D CDK4/6 inhibit 99.9 3.3E-22 1.1E-26 188.8 13.4 145 12-197 2-155 (156)
76 1d9s_A Cyclin-dependent kinase 99.9 6.9E-23 2.4E-27 190.3 8.5 134 27-200 2-136 (136)
77 1bd8_A P19INK4D CDK4/6 inhibit 99.9 4.9E-23 1.7E-27 194.6 5.8 150 39-255 2-152 (156)
78 1bi7_B P16INK4A, MTS1, multipl 99.9 1.3E-22 4.6E-27 192.8 7.6 137 38-212 11-148 (156)
79 2vge_A RELA-associated inhibit 99.9 2.1E-23 7.2E-28 212.6 -0.4 175 2-217 8-197 (229)
80 1ycs_B 53BP2, P53BP2; ankyrin 99.9 2.1E-22 7.1E-27 205.4 6.9 159 37-261 3-164 (239)
81 3t8k_A Uncharacterized protein 99.9 8.3E-23 2.8E-27 202.2 2.8 130 98-257 36-175 (186)
82 3c5r_A BARD-1, BRCA1-associate 99.9 1.2E-21 4E-26 181.8 9.8 124 96-256 6-129 (137)
83 1d9s_A Cyclin-dependent kinase 99.8 1.4E-22 4.9E-27 188.2 2.3 127 92-256 4-131 (136)
84 1n0r_A 4ANK, 4 ankyrin repeats 99.8 1.4E-20 4.8E-25 169.8 13.1 126 38-200 1-126 (126)
85 2jab_A H10-2-G3; HER2, darpin, 99.8 8.7E-22 3E-26 182.9 5.1 121 98-255 12-132 (136)
86 2jab_A H10-2-G3; HER2, darpin, 99.8 1.5E-20 5.2E-25 174.5 11.5 124 38-198 13-136 (136)
87 3aaa_C Myotrophin, protein V-1 99.8 5.4E-21 1.8E-25 174.2 7.9 100 98-206 5-104 (123)
88 1n0r_A 4ANK, 4 ankyrin repeats 99.8 4.6E-21 1.6E-25 173.0 7.0 121 99-256 1-121 (126)
89 3t8k_A Uncharacterized protein 99.8 1.7E-21 5.9E-26 192.7 4.2 160 12-204 6-183 (186)
90 3c5r_A BARD-1, BRCA1-associate 99.8 4.8E-21 1.6E-25 177.7 6.7 133 27-199 1-133 (137)
91 1bi7_B P16INK4A, MTS1, multipl 99.8 1.8E-21 6.1E-26 185.0 2.9 130 96-263 8-138 (156)
92 1n0q_A 3ANK, 3 ankyrin repeats 99.8 6.5E-20 2.2E-24 159.1 11.1 93 99-200 1-93 (93)
93 3ehr_A Osteoclast-stimulating 99.8 9.9E-21 3.4E-25 189.9 6.3 128 95-259 68-196 (222)
94 3ehr_A Osteoclast-stimulating 99.8 2.8E-20 9.6E-25 186.6 6.0 136 38-209 72-207 (222)
95 3ui2_A Signal recognition part 99.8 1.4E-20 4.6E-25 193.1 2.2 142 94-257 39-181 (244)
96 3deo_A Signal recognition part 99.8 4.7E-20 1.6E-24 180.0 5.3 111 94-214 38-149 (183)
97 2l6b_A NR1C; ankyrin, consensu 99.8 7E-20 2.4E-24 164.6 5.8 107 96-211 5-111 (115)
98 3aaa_C Myotrophin, protein V-1 99.8 4.9E-19 1.7E-23 161.2 8.9 110 38-180 6-115 (123)
99 2b0o_E UPLC1; arfgap, structur 99.8 5E-19 1.7E-23 188.0 9.8 96 96-200 186-284 (301)
100 2aja_A Ankyrin repeat family p 99.8 3.9E-20 1.3E-24 202.9 -2.0 105 101-253 164-271 (376)
101 3deo_A Signal recognition part 99.7 2.9E-18 1E-22 167.3 9.9 113 38-183 43-155 (183)
102 3lvq_E ARF-GAP with SH3 domain 99.7 6E-18 2.1E-22 191.5 12.4 104 97-209 168-274 (497)
103 2b0o_E UPLC1; arfgap, structur 99.7 3.4E-18 1.1E-22 181.6 8.1 134 12-183 151-298 (301)
104 3ui2_A Signal recognition part 99.7 1.6E-17 5.6E-22 170.1 10.7 131 38-201 44-186 (244)
105 1dcq_A PYK2-associated protein 99.7 3.6E-17 1.2E-21 171.5 13.1 96 97-201 166-264 (278)
106 3jue_A Arfgap with coiled-coil 99.7 2.5E-17 8.4E-22 180.2 10.8 111 81-200 214-326 (368)
107 1dcq_A PYK2-associated protein 99.7 8E-18 2.7E-22 176.6 6.6 123 100-258 130-260 (278)
108 3jue_A Arfgap with coiled-coil 99.7 7.4E-18 2.5E-22 184.3 6.4 121 99-256 198-321 (368)
109 3lvq_E ARF-GAP with SH3 domain 99.7 1.2E-17 4.1E-22 189.1 6.6 128 100-263 132-267 (497)
110 2aja_A Ankyrin repeat family p 99.7 6.2E-19 2.1E-23 193.3 -3.9 154 38-261 91-250 (376)
111 2zgd_A 3 repeat synthetic anky 99.7 9.5E-17 3.2E-21 144.0 8.4 92 94-194 18-109 (110)
112 1n0q_A 3ANK, 3 ankyrin repeats 99.7 3.5E-16 1.2E-20 135.5 10.1 93 38-163 1-93 (93)
113 2l6b_A NR1C; ankyrin, consensu 99.6 9E-17 3.1E-21 144.2 5.3 109 32-175 4-112 (115)
114 2zgd_A 3 repeat synthetic anky 99.5 7.7E-15 2.6E-19 131.4 2.9 87 132-253 21-107 (110)
115 1m9o_A Tristetraproline; Cys3H 99.0 1.2E-10 4.2E-15 98.6 3.2 61 306-367 8-76 (77)
116 3d2q_A Muscleblind-like protei 98.6 6.5E-09 2.2E-13 86.5 -0.3 61 310-370 6-69 (70)
117 2cqe_A KIAA1064 protein; CCCH 98.1 1.4E-06 4.8E-11 77.1 4.5 50 306-367 9-62 (98)
118 2d9n_A Cleavage and polyadenyl 98.1 1.4E-06 4.6E-11 73.8 2.9 60 303-369 3-65 (77)
119 2e5s_A Otthump00000018578; ZF- 98.0 2.8E-07 9.7E-12 81.6 -1.9 63 309-371 19-84 (98)
120 2d9m_A Zinc finger CCCH-type d 97.9 1.3E-06 4.4E-11 71.5 -0.9 40 311-350 21-63 (69)
121 2rhk_C Cleavage and polyadenyl 97.8 3.8E-06 1.3E-10 70.1 1.1 56 307-369 13-71 (72)
122 1m9o_A Tristetraproline; Cys3H 97.6 2.6E-05 8.9E-10 65.6 2.8 62 273-335 10-76 (77)
123 2d9m_A Zinc finger CCCH-type d 97.4 1.5E-05 5.3E-10 65.1 -0.5 30 342-371 17-49 (69)
124 3d2n_A Muscleblind-like protei 97.3 2.5E-05 8.6E-10 66.9 -0.9 67 308-376 7-76 (83)
125 2rpp_A Muscleblind-like protei 96.9 7.9E-05 2.7E-09 64.6 -1.5 62 309-372 16-80 (89)
126 2d9n_A Cleavage and polyadenyl 95.6 0.0071 2.4E-07 50.8 3.5 54 280-351 18-72 (77)
127 2cqe_A KIAA1064 protein; CCCH 95.3 0.01 3.5E-07 52.2 3.4 39 281-334 22-61 (98)
128 3d2q_A Muscleblind-like protei 94.0 0.021 7.2E-07 47.0 2.1 46 288-337 23-68 (70)
129 2lhn_A Nuclear polyadenylated 91.4 0.026 8.9E-07 47.7 0.0 62 277-365 11-72 (80)
130 2lhn_A Nuclear polyadenylated 91.1 0.03 1E-06 47.3 0.0 41 311-364 10-50 (80)
131 2e5s_A Otthump00000018578; ZF- 90.7 0.041 1.4E-06 48.4 -0.3 46 288-337 37-82 (98)
132 2rhk_C Cleavage and polyadenyl 90.1 0.1 3.5E-06 43.1 1.6 45 280-335 24-69 (72)
133 2rpp_A Muscleblind-like protei 85.8 0.19 6.5E-06 43.3 0.6 52 288-352 34-85 (89)
134 3d2n_A Muscleblind-like protei 83.3 0.46 1.6E-05 40.4 1.9 42 288-335 26-67 (83)
135 3u1l_A PRE-mRNA-splicing facto 65.0 1.4 4.9E-05 44.7 0.2 24 310-333 70-93 (240)
136 2fc6_A Nuclear, target of EGR1 59.6 3.8 0.00013 31.1 1.6 24 343-366 18-45 (50)
137 2fc6_A Nuclear, target of EGR1 46.0 6.4 0.00022 29.9 1.0 26 308-333 18-44 (50)
138 3v33_A Ribonuclease ZC3H12A; r 33.7 8.7 0.0003 38.4 0.0 22 344-365 191-213 (223)
139 3v33_A Ribonuclease ZC3H12A; r 32.2 11 0.00038 37.6 0.5 34 297-332 179-212 (223)
No 1
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.96 E-value=4.5e-31 Score=271.06 Aligned_cols=213 Identities=21% Similarity=0.104 Sum_probs=117.6
Q ss_pred CCccCCCCCCcHHHHH---------------------HHHHHHCCCCccCc-CCCCCCChHHHHHHHcCChhhhcCchhh
Q 004887 4 VPAVTMRNKSSPLKIS---------------------ISIFQKHTQNVFLV-DFAINDRTLLILLFFQNYLIMCGGSEKL 61 (725)
Q Consensus 4 dpdv~d~~G~TPLhiA---------------------vklLL~~GADVN~~-D~D~~G~TpLHlAa~~g~~ei~ga~~~l 61 (725)
|+|..|.+|+||||+| +++|++.|++++.. |. .|+||||+|+..|+.+++.
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~--~g~t~L~~A~~~g~~~~v~----- 74 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDR--TGETALHLAARYSRSDAAK----- 74 (253)
T ss_dssp --------------------------------------------------CCCT--TSCCHHHHHHHTTCHHHHH-----
T ss_pred CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCC--CCCcHHHHHHHcCCHHHHH-----
Confidence 7899999999999998 34688999999765 55 9999999999877665532
Q ss_pred hhcccCCCCCCCCCCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCC-CcccccCCCCchHHH
Q 004887 62 SSKALAPSASPPSKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKA-DVNLTCGLDKSTALH 140 (725)
Q Consensus 62 ~~~lL~~aa~~~~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~Ga-dVN~~~d~~G~TpLH 140 (725)
+++..+.+.+..+..|+||||+|+..|+.+++++|++. ++ +++.. +..|.||||
T Consensus 75 -----------------------~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~-~~~g~t~L~ 129 (253)
T 1yyh_A 75 -----------------------RLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN-RATDLDAR-MHDGTTPLI 129 (253)
T ss_dssp -----------------------HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHS-TTSCTTCC-CTTCCCHHH
T ss_pred -----------------------HHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccc-CCCCCcHHH
Confidence 23333333444445566666666666666666666666 43 66665 666666666
Q ss_pred HHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCccccccccccccccCCC
Q 004887 141 CAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLS 220 (725)
Q Consensus 141 ~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~ass~ls 220 (725)
+|+..|+ .++|++|++.|++++.+|..|+||||+|+..|+ .+++++|+++|++++.+|..|.||++.+.....
T Consensus 130 ~A~~~~~---~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~----~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~ 202 (253)
T 1yyh_A 130 LAARLAV---EGMLEDLINSHADVNAVDDLGKSALHWAAAVNN----VDAAVVLLKNGANKDMQNNREETPLFLAAREGS 202 (253)
T ss_dssp HHHHHTC---SSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTC----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred HHHHcCh---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC----HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCC
Confidence 6666666 666666666666666666666666666666533 336666666666666666666666665543111
Q ss_pred CC-----CCCCCCccccccCCCCcccccccCCCcCccCCC
Q 004887 221 SS-----SDDSSLSSLTCKSDDVHAFVAPEKKEYPIDPSL 255 (725)
Q Consensus 221 ~s-----~~~~~~~~~~~~~G~TpL~~A~e~g~~~vd~~L 255 (725)
.. .+.+.+++.++..|.|||++|+++|+.+|+..|
T Consensus 203 ~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l 242 (253)
T 1yyh_A 203 YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242 (253)
T ss_dssp HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHH
Confidence 11 122555667888899999999999999997544
No 2
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.96 E-value=8.6e-30 Score=266.29 Aligned_cols=186 Identities=23% Similarity=0.258 Sum_probs=141.9
Q ss_pred CccCCCCCCcHHHHH---------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCC
Q 004887 5 PAVTMRNKSSPLKIS---------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSK 75 (725)
Q Consensus 5 pdv~d~~G~TPLhiA---------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~ 75 (725)
.+..|..|.||||.| +++|++.|+|||.+|. +|+||||+|+..|+.++
T Consensus 45 ~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~--~G~TpLh~A~~~g~~~~--------------------- 101 (269)
T 4b93_B 45 VSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQ--DGSSPLHVAALHGRADL--------------------- 101 (269)
T ss_dssp ------------------------------CCCCTTCCCT--TSCCHHHHHHHTTCTTH---------------------
T ss_pred ccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCC--CCCCHHHHHHHcCcHHH---------------------
Confidence 466788899999988 6789999999999998 99999999997765544
Q ss_pred CCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHH
Q 004887 76 PSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVK 155 (725)
Q Consensus 76 ~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVk 155 (725)
+.+++..+.+....+..|.||||+|+..++.+++++||+. |+++|.+ |..|+||||+||..|+ .++|+
T Consensus 102 -------v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-g~~~n~~-d~~g~TpL~~A~~~g~---~~~v~ 169 (269)
T 4b93_B 102 -------IPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDS-NAKPNKK-DLSGNTPLIYACSGGH---HELVA 169 (269)
T ss_dssp -------HHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCC-CTTCCCHHHHHHHTTC---GGGHH
T ss_pred -------HHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHHCCC---HHHHH
Confidence 3345555556666678899999999999999999999999 9999999 9999999999999999 99999
Q ss_pred HHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCccccccccccccccCCCCCCCCCCCccccccC
Q 004887 156 LLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKS 235 (725)
Q Consensus 156 lLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~~ 235 (725)
+||++|+|+|.+|..|+||||+|+..|+. +++++|+++|+|++ .+|+.
T Consensus 170 ~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~----~~v~~Ll~~Gad~~----------------------------~~d~~ 217 (269)
T 4b93_B 170 LLLQHGASINASNNKGNTALHEAVIEKHV----FVVELLLLHGASVQ----------------------------VLNKR 217 (269)
T ss_dssp HHHHTTCCTTCBCTTSCBHHHHHHHTTCH----HHHHHHHHTTCCSC----------------------------CCCTT
T ss_pred HHHHCCCCCCccccCCCcHHHHHHHcCCH----HHHHHHHHCCCCCC----------------------------CcCCC
Confidence 99999999999999999999999998554 59999999999998 46677
Q ss_pred CCCcccccccCCC-cCccCCCCc
Q 004887 236 DDVHAFVAPEKKE-YPIDPSLPD 257 (725)
Q Consensus 236 G~TpL~~A~e~g~-~~vd~~Lpd 257 (725)
|.||||+|+++++ .++...|++
T Consensus 218 G~TpL~~A~~~~~i~~lL~~l~~ 240 (269)
T 4b93_B 218 QRTAVDCAEQNSKIMELLQVVPS 240 (269)
T ss_dssp SCCSGGGSCTTCHHHHHTTC---
T ss_pred CCCHHHHHHhCCcHHHHHHHHHH
Confidence 7889999998887 344444443
No 3
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.96 E-value=1.6e-29 Score=254.89 Aligned_cols=211 Identities=22% Similarity=0.099 Sum_probs=149.5
Q ss_pred cCCccCCCCCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCC
Q 004887 3 AVPAVTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPS 74 (725)
Q Consensus 3 Adpdv~d~~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~ 74 (725)
.|.+..|.+|.||||+| +++|+++|++++..+. .|+||||+|+..++.+++..
T Consensus 2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--~g~t~L~~A~~~~~~~~v~~----------------- 62 (237)
T 3b7b_A 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSE--DQRTPLMEAAENNHLEAVKY----------------- 62 (237)
T ss_dssp CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT--TCCCHHHHHHHTTCHHHHHH-----------------
T ss_pred CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCC--CCCCHHHHHHHhCCHHHHHH-----------------
Confidence 36788999999999999 8899999999999998 99999999998776655322
Q ss_pred CCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHH
Q 004887 75 KPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVV 154 (725)
Q Consensus 75 ~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiV 154 (725)
++..+...+..+..|.||||+|+..|+.+++++|++.+.++++.. +..|.||||+|+..|+ .+++
T Consensus 63 -----------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~~ 127 (237)
T 3b7b_A 63 -----------LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ-DDGGWTPMIWATEYKH---VDLV 127 (237)
T ss_dssp -----------HHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCC-CTTSCCHHHHHHHTTC---HHHH
T ss_pred -----------HHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccC-CCCCCCHHHHHHHcCC---HHHH
Confidence 222222333334566777777777777777777777622667666 6667777777777777 7777
Q ss_pred HHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCccccccccccccccCCCCC-----CCCCCCc
Q 004887 155 KLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSS-----SDDSSLS 229 (725)
Q Consensus 155 klLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~ass~ls~s-----~~~~~~~ 229 (725)
++|++.|++++.+|..|.||||+|+..|+ .+++++|+++|++++.+|..|.||++.+....... .+.+.++
T Consensus 128 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~ 203 (237)
T 3b7b_A 128 KLLLSKGSDINIRDNEENICLHWAAFSGC----VDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV 203 (237)
T ss_dssp HHHHHTTCCTTCCCTTSCCHHHHHHHHCC----HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred HHHHHCCCCCCccCCCCCCHHHHHHHCCC----HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCC
Confidence 77777777777777777777777776533 34777777777777777777777766654421111 2235566
Q ss_pred cccccCCCCcccccccCCCcCc
Q 004887 230 SLTCKSDDVHAFVAPEKKEYPI 251 (725)
Q Consensus 230 ~~~~~~G~TpL~~A~e~g~~~v 251 (725)
+.+++.|.||||+|+.+++...
T Consensus 204 ~~~d~~g~t~l~~A~~~~~~~~ 225 (237)
T 3b7b_A 204 TLKNKEGETPLQCASLNSQVWS 225 (237)
T ss_dssp TCCCTTSCCHHHHSCTTCHHHH
T ss_pred CccCCCCCCHHHHHHHHHHHHH
Confidence 6888999999999999987643
No 4
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.96 E-value=1.2e-29 Score=255.76 Aligned_cols=205 Identities=19% Similarity=0.148 Sum_probs=121.5
Q ss_pred ccCCCCCCcHHHHH--------HHHHHH----CCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCC
Q 004887 6 AVTMRNKSSPLKIS--------ISIFQK----HTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPP 73 (725)
Q Consensus 6 dv~d~~G~TPLhiA--------vklLL~----~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~ 73 (725)
+..|.+|+||||+| ++.|++ .|++++.+|. .|+||||+|+..++.+++....+ .++...
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~-------~g~~~~ 73 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN--LRQTPLHLAVITTLPSVVRLLVT-------AGASPM 73 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCT--TSCCHHHHHHHTTCHHHHHHHHH-------TTCCTT
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccc--cCCCHHHHHHHcCCHHHHHHHHH-------cCCCcc
Confidence 56789999999999 566665 8999999998 99999999998877766332211 111110
Q ss_pred CCCCccchhHHHHHHhhCCchh------------------hhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCC
Q 004887 74 SKPSLQRNMIGLWYSFQRLSKK------------------IVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDK 135 (725)
Q Consensus 74 ~~~~~~~~~~~L~~a~~~g~~~------------------~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G 135 (725)
..+..+.++|++++..+..+ .+..|.||||+|+..|+.+++++|+++ |++++...+..|
T Consensus 74 --~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~g 150 (241)
T 1k1a_A 74 --ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER-GADIDAVDIKSG 150 (241)
T ss_dssp --CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTTC
T ss_pred --ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHc-CCCcccccccCC
Confidence 01122233333333322221 123455555555555555555555555 555555511455
Q ss_pred chHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCcccccccccccc
Q 004887 136 STALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRS 215 (725)
Q Consensus 136 ~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~a 215 (725)
.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+..|+ .+++++|+++|++++
T Consensus 151 ~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~ga~~~------------- 210 (241)
T 1k1a_A 151 RSPLIHAVENNS---LSMVQLLLQHGANVNAQMYSGSSALHSASGRGL----LPLVRTLVRSGADSS------------- 210 (241)
T ss_dssp CCHHHHHHHTTC---HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTC----HHHHHHHHHTTCCTT-------------
T ss_pred CcHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC----HHHHHHHHhcCCCCC-------------
Confidence 555555555555 555555555555555555555555555555432 335555555555554
Q ss_pred ccCCCCCCCCCCCccccccCCCCcccccccCCCcCccCCCCc
Q 004887 216 SSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPIDPSLPD 257 (725)
Q Consensus 216 ss~ls~s~~~~~~~~~~~~~G~TpL~~A~e~g~~~vd~~Lpd 257 (725)
.++..|.|||++|+++|+.+++..|.+
T Consensus 211 ---------------~~~~~g~tpl~~A~~~~~~~i~~~l~~ 237 (241)
T 1k1a_A 211 ---------------LKNCHNDTPLMVARSRRVIDILRGKAT 237 (241)
T ss_dssp ---------------CCCTTSCCTTTTCSSHHHHHHHTC---
T ss_pred ---------------CcCCCCCCHHHHHHhcCcHHHHhhhcc
Confidence 677888899999999999999876654
No 5
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.96 E-value=2e-29 Score=258.88 Aligned_cols=227 Identities=22% Similarity=0.191 Sum_probs=172.2
Q ss_pred cCCccC-CCCCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCC
Q 004887 3 AVPAVT-MRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPP 73 (725)
Q Consensus 3 Adpdv~-d~~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~ 73 (725)
++++.. +..|.||||+| +++|+++|++++.+|. +|+||||+|+..++.+
T Consensus 29 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--~g~t~L~~A~~~~~~~-------------------- 86 (285)
T 1wdy_A 29 ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK--NGATPFLLAAIAGSVK-------------------- 86 (285)
T ss_dssp CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--TCCCHHHHHHHHTCHH--------------------
T ss_pred CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCC--CCCCHHHHHHHcCCHH--------------------
Confidence 344444 44455555555 4455555555555554 5555555555443332
Q ss_pred CCCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCccccc---------CCCCchHHHHHHh
Q 004887 74 SKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTC---------GLDKSTALHCAAS 144 (725)
Q Consensus 74 ~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~---------d~~G~TpLH~Aa~ 144 (725)
.+.+++..+.+.+..+..|.||||+|+..|+.+++++|+++ |++++... +..|.||||+|+.
T Consensus 87 --------~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~ 157 (285)
T 1wdy_A 87 --------LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR-GANVNLRRKTKEDQERLRKGGATALMDAAE 157 (285)
T ss_dssp --------HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCCCHHHHHTTCCCCCHHHHHHH
T ss_pred --------HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHh-CCCcccccccHHHHHhhccCCCcHHHHHHH
Confidence 22233344444455567899999999999999999999999 99998752 5678999999999
Q ss_pred CCCCCHHHHHHHHHHC-CCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCccccccccccccccCCCCC-
Q 004887 145 GGSVNAVDVVKLLLFA-GADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSS- 222 (725)
Q Consensus 145 ~G~~~~~eiVklLL~~-GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~ass~ls~s- 222 (725)
.|+ .+++++|++. |++++.+|..|+||||+|+..++.....+++++|+++|++++.+|..|.||++.+.......
T Consensus 158 ~~~---~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 234 (285)
T 1wdy_A 158 KGH---VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL 234 (285)
T ss_dssp HTC---HHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHH
T ss_pred cCC---HHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHH
Confidence 999 9999999998 99999999999999999999888777788999999999999999999999999876522211
Q ss_pred ----CC-CCCCccccccCCCCcccccccCCCcCccCCCCccccccc
Q 004887 223 ----SD-DSSLSSLTCKSDDVHAFVAPEKKEYPIDPSLPDIKDSIY 263 (725)
Q Consensus 223 ----~~-~~~~~~~~~~~G~TpL~~A~e~g~~~vd~~Lpdi~~~iy 263 (725)
.+ .+.+++.++..|.||||+|++.++.+++..|.+.+..+.
T Consensus 235 v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~ 280 (285)
T 1wdy_A 235 VQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 280 (285)
T ss_dssp HHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred HHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Confidence 22 367888999999999999999999999887766554444
No 6
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.96 E-value=1.2e-29 Score=279.97 Aligned_cols=149 Identities=22% Similarity=0.194 Sum_probs=73.5
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHH
Q 004887 99 QHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVI 178 (725)
Q Consensus 99 ~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA 178 (725)
.|.||||+|+..|+.+++++|+++ |+++|.. +..|.||||+|+..|+ .++|++|++.|++++..|..|.||||+|
T Consensus 211 ~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~g~---~~~v~~Ll~~~~~~~~~~~~g~t~L~~A 285 (437)
T 1n11_A 211 NGYTPLHIAAKQNQVEVARSLLQY-GGSANAE-SVQGVTPLHLAAQEGH---AEMVALLLSKQANGNLGNKSGLTPLHLV 285 (437)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHTTTCCTTCCCTTCCCHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHHHCCC---HHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 344455555555555555555544 4455544 4455555555555555 5555555555555555555555555555
Q ss_pred HhCCCCCCHHHHHHHHHHCCCCCCCccccccccccccccCCCCC-----CCCCCCccccccCCCCcccccccCCCcCccC
Q 004887 179 VVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSS-----SDDSSLSSLTCKSDDVHAFVAPEKKEYPIDP 253 (725)
Q Consensus 179 ~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~ass~ls~s-----~~~~~~~~~~~~~G~TpL~~A~e~g~~~vd~ 253 (725)
+..|+ .+++++|+++|++++.+|..|.||++.+....... .+.+.+++.++..|.||||+|+..|+.+++.
T Consensus 286 ~~~~~----~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~ 361 (437)
T 1n11_A 286 AQEGH----VPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVT 361 (437)
T ss_dssp HHHTC----HHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHcCC----HHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHH
Confidence 55422 22555555555555555555555555443311111 1124455555555555555555555555544
Q ss_pred CCC
Q 004887 254 SLP 256 (725)
Q Consensus 254 ~Lp 256 (725)
.|.
T Consensus 362 ~Ll 364 (437)
T 1n11_A 362 LLL 364 (437)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 7
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.96 E-value=1.6e-29 Score=260.34 Aligned_cols=192 Identities=19% Similarity=0.142 Sum_probs=147.0
Q ss_pred CccCCCCCCcHHHHH--------HHHHHHCCCC---ccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCC
Q 004887 5 PAVTMRNKSSPLKIS--------ISIFQKHTQN---VFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPP 73 (725)
Q Consensus 5 pdv~d~~G~TPLhiA--------vklLL~~GAD---VN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~ 73 (725)
.+.+|.+|+||||+| +++|+++|++ ++.+|. .|+||||+|+..|+.+++....+ .++...
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~-------~ga~~~ 72 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQND--LGQTALHLAAILGEASTVEKLYA-------AGAGVL 72 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCT--TSCCHHHHHHHHTCHHHHHHHHH-------TTCCSS
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCC--CCCCHHHHHHHcCCHHHHHHHHH-------cCCCCC
Confidence 467899999999999 8899999998 888887 99999999999888777433322 222111
Q ss_pred CCCCccchhHHHHHHhhCCchhh---------------------------------------------------------
Q 004887 74 SKPSLQRNMIGLWYSFQRLSKKI--------------------------------------------------------- 96 (725)
Q Consensus 74 ~~~~~~~~~~~L~~a~~~g~~~~--------------------------------------------------------- 96 (725)
..+..+.++|++++..+...+
T Consensus 73 --~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (282)
T 1oy3_D 73 --VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ 150 (282)
T ss_dssp --CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGG
T ss_pred --CCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhc
Confidence 123355677777765544332
Q ss_pred ----hcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCC
Q 004887 97 ----VLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGN 172 (725)
Q Consensus 97 ----~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~ 172 (725)
+..|.||||+|+..|+.++|++||++ |+++|...+..|+||||+|+..|+ .++|++||++|+|++.+|..|+
T Consensus 151 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~tpL~~A~~~~~---~~~v~~Ll~~gad~~~~d~~g~ 226 (282)
T 1oy3_D 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDA-GADLNKPEPTCGRTPLHLAVEAQA---ASVLELLLKAGADPTARMYGGR 226 (282)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSC
T ss_pred CCCcCCCCcCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcCHHHHHHHcCC---HHHHHHHHHcCCCCcccccCCC
Confidence 34688999999999999999999998 999999833459999999999999 9999999999999999999999
Q ss_pred cHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCcccccccccccc
Q 004887 173 RPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRS 215 (725)
Q Consensus 173 TPLhlA~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~a 215 (725)
||||+|+..| ..+++++|+++|++++.+|..|.||...+
T Consensus 227 tpL~~A~~~~----~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a 265 (282)
T 1oy3_D 227 TPLGSALLRP----NPILARLLRAHGAPEPEDGGDKLSPCSSS 265 (282)
T ss_dssp CHHHHHHTSS----CHHHHHHHHHTTCCCCCCC----------
T ss_pred CHHHHHHHcC----CcHHHHHHHHcCCCcCcCCCccccccccc
Confidence 9999999974 45599999999999987776666665443
No 8
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.96 E-value=7.6e-29 Score=255.91 Aligned_cols=196 Identities=19% Similarity=0.188 Sum_probs=114.4
Q ss_pred CCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccchh
Q 004887 11 NKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNM 82 (725)
Q Consensus 11 ~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~~ 82 (725)
+|+||||+| +++|+++|+++|.+|. +|+||||+|+..|+.++..
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--~g~t~L~~A~~~g~~~~v~-------------------------- 53 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITA--DHVSPLHEACLGGHLSCVK-------------------------- 53 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCT--TCCCHHHHHHHHTCHHHHH--------------------------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC--CCCCHHHHHHHcCCHHHHH--------------------------
Confidence 589999998 7889999999999988 8999999999877665532
Q ss_pred HHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCC
Q 004887 83 IGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGA 162 (725)
Q Consensus 83 ~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GA 162 (725)
+++..+.+.+..+..|.||||+|+..|+.+++++|+++ |++++. +.+|.||||+|+..|+ .++|++|+++|+
T Consensus 54 --~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~--~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~ 125 (261)
T 2xai_A 54 --ILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH-GASVQP--ESDLASPIHEAARRGH---VECVNSLIAYGG 125 (261)
T ss_dssp --HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSSC--SCTTCCHHHHHHHTTC---HHHHHHHHHTTC
T ss_pred --HHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCC--CCCCCCHHHHHHHcCc---HHHHHHHHHcCC
Confidence 22223333333444555555555555555555555555 555554 2345555555555555 555555555555
Q ss_pred CCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCccccccccccccccCCCCC-----CCCCCCccccccCCC
Q 004887 163 DSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSS-----SDDSSLSSLTCKSDD 237 (725)
Q Consensus 163 Din~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~ass~ls~s-----~~~~~~~~~~~~~G~ 237 (725)
+++.+|..|.||||+|+..|+ .+++++|+++|++++. +..|.||++.+....... .+.+.+++.+|..|.
T Consensus 126 ~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~ 200 (261)
T 2xai_A 126 NIDHKISHLGTPLYLACENQQ----RACVKKLLESGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGK 200 (261)
T ss_dssp CTTCCBTTTBCHHHHHHHTTC----HHHHHHHHHHTCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred CCCcCCCCCCCHHHHHHHhCC----HHHHHHHHHcCCCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence 555555555555555555432 2355555555555553 555555555443311111 122445556666666
Q ss_pred CcccccccCC
Q 004887 238 VHAFVAPEKK 247 (725)
Q Consensus 238 TpL~~A~e~g 247 (725)
||||+|++++
T Consensus 201 tpl~~A~~~~ 210 (261)
T 2xai_A 201 RPVELVPPES 210 (261)
T ss_dssp CGGGGSCTTC
T ss_pred Chhhhccccc
Confidence 7777776443
No 9
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.96 E-value=1.2e-29 Score=273.60 Aligned_cols=206 Identities=10% Similarity=0.048 Sum_probs=158.1
Q ss_pred cCCccCCCCCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCC
Q 004887 3 AVPAVTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPS 74 (725)
Q Consensus 3 Adpdv~d~~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~ 74 (725)
.+++..|.+|.||||+| +++|+++|+++|.+|. .|+||||+|+..|+.+++....+... ..
T Consensus 11 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~--~g~t~L~~A~~~g~~~~v~~Ll~~g~-------~~-- 79 (364)
T 3ljn_A 11 LNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNR--FGCTALHLACKFGCVDTAKYLASVGE-------VH-- 79 (364)
T ss_dssp -----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT--TCCCHHHHHHHHCCHHHHHHHHHHCC-------CC--
T ss_pred CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC--CCCcHHHHHHHcCCHHHHHHHHHCCC-------Cc--
Confidence 35678889999999999 8899999999999998 99999999999988877443322211 10
Q ss_pred CCCccchhHHHHHHhhCCchh-----------------------------------hhcCCChHHHHHHHcC--CHHHHH
Q 004887 75 KPSLQRNMIGLWYSFQRLSKK-----------------------------------IVLQHRTPLMVAAEYG--SVDVVK 117 (725)
Q Consensus 75 ~~~~~~~~~~L~~a~~~g~~~-----------------------------------~~~~G~TPLh~Aa~~G--~~eiVk 117 (725)
....+.++|++++..+..+ .+..|.||||+|+..| +.++|+
T Consensus 80 --~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~ 157 (364)
T 3ljn_A 80 --SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIK 157 (364)
T ss_dssp --CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHH
T ss_pred --cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHH
Confidence 1123445555555444333 3346888888888888 888888
Q ss_pred HHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCC-----CCCcCCCCCcHHHHHHhCCCCCCHHHHHH
Q 004887 118 LILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGAD-----SNLTDAHGNRPFDVIVVHPNVPDSRVSLE 192 (725)
Q Consensus 118 ~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAD-----in~~D~~G~TPLhlA~~~g~~e~~~~ive 192 (725)
+||++ |+++|.+ +..|.||||+|+..|+ .++|++||++|++ ++.+|..|+||||+|+..|+ .++++
T Consensus 158 ~Ll~~-ga~~~~~-d~~g~t~L~~A~~~g~---~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~----~~~v~ 228 (364)
T 3ljn_A 158 ILVQL-GASPTAK-DKADETPLMRAMEFRN---REALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINW----EDVAM 228 (364)
T ss_dssp HHHHH-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTC----HHHHH
T ss_pred HHHHc-CCCCccc-CCCCCCHHHHHHHcCC---HHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCC----HHHHH
Confidence 88888 8888888 8888888888888888 8888888888888 88888888888888888744 44888
Q ss_pred HHHHCCCCCCCccccccccccccccCCCCCCCCCCCccccccCCCCcccccccCCCcCccCCCCcc
Q 004887 193 DLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPIDPSLPDI 258 (725)
Q Consensus 193 lLL~~Gadvn~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~~G~TpL~~A~e~g~~~vd~~Lpdi 258 (725)
+|+++|++++ ..+..|.||||+|++.|+.+++..|.+.
T Consensus 229 ~Ll~~gad~~----------------------------~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 229 RFVEMGIDVN----------------------------MEDNEHTVPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHTTTCCTT----------------------------CCCTTSCCHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHcCCCCC----------------------------CCCCCCCCHHHHHHHhChHHHHHHHHHc
Confidence 8888888887 4667788999999999999998776653
No 10
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.96 E-value=6.3e-29 Score=274.19 Aligned_cols=240 Identities=19% Similarity=0.171 Sum_probs=178.7
Q ss_pred cCCccCCCCCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhh------cC-----------
Q 004887 3 AVPAVTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMC------GG----------- 57 (725)
Q Consensus 3 Adpdv~d~~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~------ga----------- 57 (725)
||++..|..|.||||+| +++|+++|++++..+. .|.||||+|+..|+.++. +.
T Consensus 104 a~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t 181 (437)
T 1n11_A 104 ANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTK--KGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLT 181 (437)
T ss_dssp CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT--TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCC
T ss_pred CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCC--CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCC
Confidence 55666666666666665 5555555555555554 555555555555554441 11
Q ss_pred ---------chhhhhcccCCCCCCCCCCCccchhHHHHHHhhCCchhh--------------hcCCChHHHHHHHcCCHH
Q 004887 58 ---------SEKLSSKALAPSASPPSKPSLQRNMIGLWYSFQRLSKKI--------------VLQHRTPLMVAAEYGSVD 114 (725)
Q Consensus 58 ---------~~~l~~~lL~~aa~~~~~~~~~~~~~~L~~a~~~g~~~~--------------~~~G~TPLh~Aa~~G~~e 114 (725)
..++...++...+... .....+.++|++++..+..++ +..|.||||+|+..|+.+
T Consensus 182 ~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~ 259 (437)
T 1n11_A 182 PLHVAVHHNNLDIVKLLLPRGGSPH--SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAE 259 (437)
T ss_dssp HHHHHHHTTCHHHHHHHGGGTCCSC--CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCC--CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence 1112222222222211 112345566777666554433 367999999999999999
Q ss_pred HHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHH
Q 004887 115 VVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDL 194 (725)
Q Consensus 115 iVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelL 194 (725)
+|++|+++ |+++|.. +..|.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+..|+.+ ++++|
T Consensus 260 ~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~----~v~~L 330 (437)
T 1n11_A 260 MVALLLSK-QANGNLG-NKSGLTPLHLVAQEGH---VPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIK----LVKFL 330 (437)
T ss_dssp HHHHHHTT-TCCTTCC-CTTCCCHHHHHHHHTC---HHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSH----HHHHH
T ss_pred HHHHHHhc-CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHH----HHHHH
Confidence 99999999 9999999 9999999999999999 99999999999999999999999999999987766 99999
Q ss_pred HHCCCCCCCccccccccccccccCCCCC-----CCCCCCccccccCCCCcccccccCCCcCccCCC
Q 004887 195 LKNGGSVSFDELQVSSVDLRSSSSLSSS-----SDDSSLSSLTCKSDDVHAFVAPEKKEYPIDPSL 255 (725)
Q Consensus 195 L~~Gadvn~~d~~g~Tp~~~ass~ls~s-----~~~~~~~~~~~~~G~TpL~~A~e~g~~~vd~~L 255 (725)
+++|++++.+|..|.||++.+....... .+.+.+++.++..|.|||++|.+.|+.+++..|
T Consensus 331 l~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l 396 (437)
T 1n11_A 331 LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396 (437)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred HhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcHHHHHHH
Confidence 9999999999999999999876622222 334889999999999999999999998886533
No 11
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.96 E-value=1.7e-28 Score=252.78 Aligned_cols=170 Identities=16% Similarity=0.067 Sum_probs=125.5
Q ss_pred CccCCCCCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhc------------
Q 004887 5 PAVTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSK------------ 64 (725)
Q Consensus 5 pdv~d~~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~------------ 64 (725)
+|..|..|+||||+| +++|+++|++++.+|. .|+||||+|+..++.++..........
T Consensus 38 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~--~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~ 115 (282)
T 1oy3_D 38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAER--GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ 115 (282)
T ss_dssp GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCT--TSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhc
Confidence 788999999999999 8899999999999998 999999999999888773222111000
Q ss_pred -----------ccCCCCC---------------CCCCCCccchhHHHHHHhhCCchhhh---------------cCCChH
Q 004887 65 -----------ALAPSAS---------------PPSKPSLQRNMIGLWYSFQRLSKKIV---------------LQHRTP 103 (725)
Q Consensus 65 -----------lL~~aa~---------------~~~~~~~~~~~~~L~~a~~~g~~~~~---------------~~G~TP 103 (725)
.+..... ......+..+.++|++++..+...++ ..|.||
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tp 195 (282)
T 1oy3_D 116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTP 195 (282)
T ss_dssp ----------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCH
T ss_pred ccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCH
Confidence 0000000 00112234567788888877765544 249999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHhC
Q 004887 104 LMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVH 181 (725)
Q Consensus 104 Lh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA~~~ 181 (725)
||+|+..|+.++|++||++ |+++|.+ +..|.||||+|+..|+ .++|++|+++||+++.+|..|.|||++|...
T Consensus 196 L~~A~~~~~~~~v~~Ll~~-gad~~~~-d~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~ 268 (282)
T 1oy3_D 196 LHLAVEAQAASVLELLLKA-GADPTAR-MYGGRTPLGSALLRPN---PILARLLRAHGAPEPEDGGDKLSPCSSSGSD 268 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHTSSC---HHHHHHHHHTTCCCCCCC-------------
T ss_pred HHHHHHcCCHHHHHHHHHc-CCCCccc-ccCCCCHHHHHHHcCC---cHHHHHHHHcCCCcCcCCCcccccccccCCc
Confidence 9999999999999999999 9999999 9999999999999999 9999999999999999999999999999875
No 12
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.96 E-value=1.3e-28 Score=246.07 Aligned_cols=188 Identities=20% Similarity=0.156 Sum_probs=162.1
Q ss_pred cCCccC-CCCCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCC
Q 004887 3 AVPAVT-MRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPP 73 (725)
Q Consensus 3 Adpdv~-d~~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~ 73 (725)
++++.. |.+|.||||+| +++|+++|++++.+|. .|+||||+|+..++.+++.
T Consensus 15 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--~g~t~L~~A~~~~~~~~v~----------------- 75 (223)
T 2f8y_A 15 ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDN--MGRTPLHAAVSADAQGVFQ----------------- 75 (223)
T ss_dssp CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--TSCCHHHHHHHTTCHHHHH-----------------
T ss_pred CCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCC--CCCCHHHHHHHcCCHHHHH-----------------
Confidence 556554 88999999999 8899999999999998 9999999999877665532
Q ss_pred CCCCccchhHHHHHHhhC-CchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHH
Q 004887 74 SKPSLQRNMIGLWYSFQR-LSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVD 152 (725)
Q Consensus 74 ~~~~~~~~~~~L~~a~~~-g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~e 152 (725)
+++..+. ..+..+..|.||||+|+..|+.+++++|+++ |++++.. +..|.||||+|+..|+ .+
T Consensus 76 -----------~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~ 139 (223)
T 2f8y_A 76 -----------ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAV-DDLGKSALHWAAAVNN---VD 139 (223)
T ss_dssp -----------HHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCB-CTTSCBHHHHHHHTTC---HH
T ss_pred -----------HHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHc-CCCCcCc-CCCCCcHHHHHHHcCC---HH
Confidence 2222222 3344467899999999999999999999999 9999999 9999999999999999 99
Q ss_pred HHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCccccccccccccccCCCCCCCCCCCcccc
Q 004887 153 VVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLT 232 (725)
Q Consensus 153 iVklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~ 232 (725)
++++|++.|++++.+|..|.||||+|+..| ..+++++|+++|++++. +
T Consensus 140 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~----~~~~v~~Ll~~ga~~~~----------------------------~ 187 (223)
T 2f8y_A 140 AAVVLLKNGANKDMQNNREETPLFLAAREG----SYETAKVLLDHFANRDI----------------------------T 187 (223)
T ss_dssp HHHHHHHTTCCTTCCCTTCCCHHHHHHHHT----CHHHHHHHHHTTCCTTC----------------------------C
T ss_pred HHHHHHHcCCCCCCcCCCCcCHHHHHHHcC----CHHHHHHHHHcCCCCcc----------------------------c
Confidence 999999999999999999999999999975 45599999999999874 5
Q ss_pred ccCCCCcccccccCCCcCccCCCCc
Q 004887 233 CKSDDVHAFVAPEKKEYPIDPSLPD 257 (725)
Q Consensus 233 ~~~G~TpL~~A~e~g~~~vd~~Lpd 257 (725)
+..|.|||++|+++++.+++..|.+
T Consensus 188 ~~~g~t~l~~A~~~~~~~i~~~L~~ 212 (223)
T 2f8y_A 188 DHMDRLPRDIAQERMHHDIVRLLDE 212 (223)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred cccCCCHHHHHHHhcchHHHHHHHH
Confidence 6677789999999999999876554
No 13
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.95 E-value=1.2e-28 Score=263.03 Aligned_cols=243 Identities=21% Similarity=0.121 Sum_probs=192.6
Q ss_pred CCCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCC----
Q 004887 10 RNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPS---- 77 (725)
Q Consensus 10 ~~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~---- 77 (725)
.+|.|+||.| |++|+++|+|||.++ +..|+||||+|+..|+.+++.... ..++.+.....
T Consensus 23 ~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~-~~~g~TpLh~A~~~g~~~iv~~Ll-------~~ga~~~~~~~~~~~ 94 (337)
T 4g8k_A 23 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-EEGGWTPLHNAVQMSREDIVELLL-------RHGADPVLRKKNGAT 94 (337)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHH-------HTTCCTTCCCTTCCC
T ss_pred CCCChHHHHHHHcCCHHHHHHHHHCCCCCCccC-CCCCcCHHHHHHHcCCHHHHHHHH-------HcCCchhhhccCCCc
Confidence 3578999999 999999999999998 346999999999998887743322 22222111110
Q ss_pred --------ccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCccccc---------CCCCchHHH
Q 004887 78 --------LQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTC---------GLDKSTALH 140 (725)
Q Consensus 78 --------~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~---------d~~G~TpLH 140 (725)
.......+++....+.+..+..|.||||+|+..|+.+++++|+++ |++++... +..|.||||
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~-ga~~~~~~~~~~~~~~~~~~g~T~L~ 173 (337)
T 4g8k_A 95 PFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR-GANVNLRRKTKEDQERLRKGGATALM 173 (337)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCCC-----CTTCSCCHHH
T ss_pred hhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHc-CCCcchhhccccccccccCCCCcHHH
Confidence 112222333344555666678999999999999999999999999 99988641 456899999
Q ss_pred HHHhCCCCCHHHHHHHHHH-CCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCccccccccccccccCC
Q 004887 141 CAASGGSVNAVDVVKLLLF-AGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSL 219 (725)
Q Consensus 141 ~Aa~~G~~~~~eiVklLL~-~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~ass~l 219 (725)
+|+..|+ .++|++||+ .|+|++.+|..|.|+||+++..++......++++|+++|++++.+|..|.||++.+....
T Consensus 174 ~A~~~g~---~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~ 250 (337)
T 4g8k_A 174 DAAEKGH---VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK 250 (337)
T ss_dssp HHHHHTC---HHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTT
T ss_pred HHHHCCC---HHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhh
Confidence 9999999 999999996 699999999999999999988777677888999999999999999999999999876522
Q ss_pred CCC-----CC-CCCCccccccCCCCcccccccCCCcCccCCCCcccccccc
Q 004887 220 SSS-----SD-DSSLSSLTCKSDDVHAFVAPEKKEYPIDPSLPDIKDSIYA 264 (725)
Q Consensus 220 s~s-----~~-~~~~~~~~~~~G~TpL~~A~e~g~~~vd~~Lpdi~~~iy~ 264 (725)
... .+ .+.+++.+|..|.||||+|++.|+.+|+..|.+.+..+..
T Consensus 251 ~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~ 301 (337)
T 4g8k_A 251 HLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 301 (337)
T ss_dssp CHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTT
T ss_pred hhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence 221 22 2668899999999999999999999999888766555443
No 14
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.95 E-value=9e-29 Score=248.46 Aligned_cols=185 Identities=18% Similarity=0.167 Sum_probs=129.2
Q ss_pred CccCCCCCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCC
Q 004887 5 PAVTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKP 76 (725)
Q Consensus 5 pdv~d~~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~ 76 (725)
.+..|.+|.||||+| +++|+++|++++.+|. .|+||||+|+..++.++.
T Consensus 33 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--~g~t~L~~A~~~~~~~~v--------------------- 89 (231)
T 3aji_A 33 ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD--AGWSPLHIAASAGXDEIV--------------------- 89 (231)
T ss_dssp GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT--TSCCHHHHHHHHTCHHHH---------------------
T ss_pred hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCC--CCCCHHHHHHHcCHHHHH---------------------
Confidence 455666777777777 6677777777777766 777777777755444332
Q ss_pred CccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHH
Q 004887 77 SLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKL 156 (725)
Q Consensus 77 ~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVkl 156 (725)
.+++..+.+.+..+..|.||||+|+..|+.+++++|+++ |++++.+ +..|.||||+|+..|+ .+++++
T Consensus 90 -------~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~ 157 (231)
T 3aji_A 90 -------KALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAK-DHYDATAMHRAAAKGN---LKMVHI 157 (231)
T ss_dssp -------HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHHTC---HHHHHH
T ss_pred -------HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCc-CCCCCcHHHHHHHcCC---HHHHHH
Confidence 233333334444456677777777777777777777777 7777777 7777777777777777 777777
Q ss_pred HHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCccccccccccccccCCCCCCCCCCCccccccCC
Q 004887 157 LLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSD 236 (725)
Q Consensus 157 LL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~~G 236 (725)
|++.|++++.+|..|+||||+|+..|+ .+++++|+++|++++ .++..|
T Consensus 158 Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~ga~~~----------------------------~~~~~g 205 (231)
T 3aji_A 158 LLFYKASTNIQDTEGNTPLHLACDEER----VEEAKFLVTQGASIY----------------------------IENKEE 205 (231)
T ss_dssp HHHTTCCSCCCCTTSCCHHHHHHHTTC----HHHHHHHHHTTCCSC----------------------------CCCTTS
T ss_pred HHhcCCCccccCCCCCCHHHHHHHCCC----HHHHHHHHHCCCCCC----------------------------CCCCCC
Confidence 777777777777777777777777643 447777777777776 566778
Q ss_pred CCcccccccCCCcCccCCCC
Q 004887 237 DVHAFVAPEKKEYPIDPSLP 256 (725)
Q Consensus 237 ~TpL~~A~e~g~~~vd~~Lp 256 (725)
.|||++|.+.++.++...|.
T Consensus 206 ~t~l~~A~~~~~~~i~~lL~ 225 (231)
T 3aji_A 206 KTPLQVAKGGLGLILKRLAE 225 (231)
T ss_dssp CCHHHHSCHHHHHHHHHHHH
T ss_pred CCHHHHHHhhHHHHHHHHHc
Confidence 88899998888777765443
No 15
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.95 E-value=2.5e-28 Score=252.02 Aligned_cols=205 Identities=16% Similarity=0.067 Sum_probs=170.8
Q ss_pred ccCCccCCCCCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCC
Q 004887 2 VAVPAVTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPP 73 (725)
Q Consensus 2 ~Adpdv~d~~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~ 73 (725)
.+|+|..|.+|.||||+| +++|+++|+++|.+|. +|+||||+|+..++.++..
T Consensus 26 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--~g~t~L~~A~~~~~~~~v~----------------- 86 (261)
T 2xai_A 26 GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA--DWHTPLFNACVSGSWDCVN----------------- 86 (261)
T ss_dssp TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT--TSCCHHHHHHHHTCHHHHH-----------------
T ss_pred CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC--CCCCHHHHHHHcCCHHHHH-----------------
Confidence 479999999999999999 8899999999999998 9999999999877665532
Q ss_pred CCCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHH
Q 004887 74 SKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDV 153 (725)
Q Consensus 74 ~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~ei 153 (725)
+++..+.+.+ ...+|.||||+|+..|+.+++++|+++ |+++|.+ +..|.||||+|+..|+ .++
T Consensus 87 -----------~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~ 149 (261)
T 2xai_A 87 -----------LLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIAY-GGNIDHK-ISHLGTPLYLACENQQ---RAC 149 (261)
T ss_dssp -----------HHHHTTCCSS-CSCTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-BTTTBCHHHHHHHTTC---HHH
T ss_pred -----------HHHHCCCCCC-CCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCcC-CCCCCCHHHHHHHhCC---HHH
Confidence 2222222222 134699999999999999999999999 9999999 9999999999999999 999
Q ss_pred HHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCccccccccccccccCCCCC---CCCC----
Q 004887 154 VKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSS---SDDS---- 226 (725)
Q Consensus 154 VklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~ass~ls~s---~~~~---- 226 (725)
|++|++.|++++. |..|+||||+|+..| ..+++++|+++|++++.+|..|.||.+.+....... .+..
T Consensus 150 v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~----~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~~ll~~~~~~~ 224 (261)
T 2xai_A 150 VKKLLESGADVNQ-GKGQDSPLHAVARTA----SEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLEREGPPS 224 (261)
T ss_dssp HHHHHHHTCCTTC-CBTTBCHHHHHHHHT----CHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTCTHHHHHHHC-CCCC
T ss_pred HHHHHHcCCCCCC-CCCCCChHHHHHHcC----CHHHHHHHHHcCCCCCCcCCCCCChhhhccccccHHHHHHhccCCcc
Confidence 9999999999995 899999999999974 455999999999999999999999998876411100 0111
Q ss_pred ----CCccccccCCCCcccccccCC
Q 004887 227 ----SLSSLTCKSDDVHAFVAPEKK 247 (725)
Q Consensus 227 ----~~~~~~~~~G~TpL~~A~e~g 247 (725)
....+.+..|.|+||.|.+..
T Consensus 225 l~~~~~~~~r~~~g~t~l~~~~~~~ 249 (261)
T 2xai_A 225 LMQLCRLRIRKCFGIQQHHKITKLV 249 (261)
T ss_dssp HHHHHHHHHHTTSCTTCGGGGGGSS
T ss_pred HHHHHHHHHHHHhchhccccCcccC
Confidence 145578899999999987543
No 16
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.95 E-value=7.1e-29 Score=249.77 Aligned_cols=196 Identities=20% Similarity=0.164 Sum_probs=160.7
Q ss_pred CCCcHHHHH--------HHHHHHC-CCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccch
Q 004887 11 NKSSPLKIS--------ISIFQKH-TQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRN 81 (725)
Q Consensus 11 ~G~TPLhiA--------vklLL~~-GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~ 81 (725)
.|+||||+| ++.|++. |+++|.+|. .|+||||+|+..|+.+++....+......
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~--------------- 64 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGA--MGETALHIAALYDNLEAAMVLMEAAPELV--------------- 64 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCT--TSCCHHHHHHHTTCHHHHHHHHHHCGGGG---------------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCC--CCCCHHHHHHHcCCHHHHHHHHHcCchhc---------------
Confidence 589999999 7888987 999999998 99999999998877666433222111100
Q ss_pred hHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCC-------------CCchHHHHHHhCCCC
Q 004887 82 MIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGL-------------DKSTALHCAASGGSV 148 (725)
Q Consensus 82 ~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~-------------~G~TpLH~Aa~~G~~ 148 (725)
.......+..|.||||+|+..|+.+++++||++ |++++.. +. .|.||||+|+..|+
T Consensus 65 --------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~- 133 (232)
T 2rfa_A 65 --------FEPMTSELYEGQTALHIAVINQNVNLVRALLAR-GASVSAR-ATGSVFHYRPHNLIYYGEHPLSFAACVGS- 133 (232)
T ss_dssp --------GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CCSGGGSCCTTCSCCCCSSHHHHHHHHTC-
T ss_pred --------cccccccCCCCcCHHHHHHHcCCHHHHHHHHhC-CCCCCcc-cCCcceeecccccccCCCCHHHHHHHcCC-
Confidence 001133456899999999999999999999999 9999987 54 79999999999999
Q ss_pred CHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCccccccccccccccCCCCCCCCCCC
Q 004887 149 NAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSL 228 (725)
Q Consensus 149 ~~~eiVklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~ass~ls~s~~~~~~ 228 (725)
.++|++|+++|+|++.+|..|+||||+|+..|+.+....++++|+++|++++..+.
T Consensus 134 --~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~---------------------- 189 (232)
T 2rfa_A 134 --EEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSL---------------------- 189 (232)
T ss_dssp --HHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCG----------------------
T ss_pred --HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhh----------------------
Confidence 99999999999999999999999999999987766555666999999998863221
Q ss_pred ccccccCCCCcccccccCCCcCccCCCCcc
Q 004887 229 SSLTCKSDDVHAFVAPEKKEYPIDPSLPDI 258 (725)
Q Consensus 229 ~~~~~~~G~TpL~~A~e~g~~~vd~~Lpdi 258 (725)
.+.++..|.||||+|++.|+.+++..|.+.
T Consensus 190 ~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 190 ELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp GGCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred hccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 126788999999999999999998766653
No 17
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.95 E-value=3.4e-28 Score=255.00 Aligned_cols=200 Identities=19% Similarity=0.165 Sum_probs=133.8
Q ss_pred CccCCCCCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCC
Q 004887 5 PAVTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKP 76 (725)
Q Consensus 5 pdv~d~~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~ 76 (725)
.+..|.+|+||||+| +++|++.|+++|.+|. +|+||||+|+..++.+++.
T Consensus 52 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~--~g~t~L~~A~~~g~~~~v~-------------------- 109 (285)
T 3d9h_A 52 LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITA--DHVSPLHEACLGGHLSCVK-------------------- 109 (285)
T ss_dssp TCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECT--TCCCHHHHHHHTTCHHHHH--------------------
T ss_pred ccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC--CCCCHHHHHHHCCcHHHHH--------------------
Confidence 456788999999999 8899999999999998 9999999999877665532
Q ss_pred CccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHH
Q 004887 77 SLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKL 156 (725)
Q Consensus 77 ~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVkl 156 (725)
+++..+.+.+..+..|.||||+|+..|+.+++++|++. |++++.. .+|.||||+|+..|+ .+++++
T Consensus 110 --------~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~--~~g~t~L~~A~~~g~---~~~v~~ 175 (285)
T 3d9h_A 110 --------ILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH-GASVQPE--SDLASPIHEAARRGH---VECVNS 175 (285)
T ss_dssp --------HHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSSCS--CTTSCHHHHHHHHTC---HHHHHH
T ss_pred --------HHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHC-CCCCCCC--CCCCCHHHHHHHcCC---HHHHHH
Confidence 23333333444455566666666666666666666666 6666643 346666666666666 666666
Q ss_pred HHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCccccccccccccccCCCCC-----CCCCCCccc
Q 004887 157 LLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSS-----SDDSSLSSL 231 (725)
Q Consensus 157 LL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~ass~ls~s-----~~~~~~~~~ 231 (725)
|++.|++++.+|..|+||||+|+..|+ .+++++|+++|++++. |..|.||++.+....... .+.+.+++.
T Consensus 176 Ll~~g~~~~~~d~~g~t~L~~A~~~~~----~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~ 250 (285)
T 3d9h_A 176 LIAYGGNIDHKISHLGTPLYLACENQQ----RACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQA 250 (285)
T ss_dssp HHHTTCCTTCCBTTTBCHHHHHHHTTC----HHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHCCCCCCCcCCCCCCHHHHHHHcCc----HHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence 666666666666666666666666533 3366666666666663 566666666554311111 122555667
Q ss_pred cccCCCCccccccc
Q 004887 232 TCKSDDVHAFVAPE 245 (725)
Q Consensus 232 ~~~~G~TpL~~A~e 245 (725)
+|..|.|||++|++
T Consensus 251 ~d~~g~t~l~~A~~ 264 (285)
T 3d9h_A 251 KNAEGKRPVELVPP 264 (285)
T ss_dssp CCTTSCCGGGGSCT
T ss_pred cCCCCCCHHHHhcC
Confidence 88889999999984
No 18
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.95 E-value=4.3e-28 Score=256.81 Aligned_cols=207 Identities=22% Similarity=0.161 Sum_probs=131.3
Q ss_pred ccCCccCCCCCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCC
Q 004887 2 VAVPAVTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPP 73 (725)
Q Consensus 2 ~Adpdv~d~~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~ 73 (725)
.++++..|..|.||||+| +++|+++|++++.+|. .|+||||+|+..|+.+++.
T Consensus 48 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--~g~t~L~~A~~~g~~~iv~----------------- 108 (351)
T 3utm_A 48 NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDK--GGLVPLHNACSYGHYEVTE----------------- 108 (351)
T ss_dssp TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--TCCCHHHHHHHTTCHHHHH-----------------
T ss_pred CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC--CCCcHHHHHHHCCCHHHHH-----------------
Confidence 367888999999999999 8899999999999998 9999999999877665532
Q ss_pred CCCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccc-----------------------
Q 004887 74 SKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLT----------------------- 130 (725)
Q Consensus 74 ~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~----------------------- 130 (725)
+++..+.+.+..+..|.||||+|+..|+.+++++|+++ |++++..
T Consensus 109 -----------~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~ 176 (351)
T 3utm_A 109 -----------LLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH-GADPTLVNCHGKSAVDMAPTPELRERLTYE 176 (351)
T ss_dssp -----------HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCSSHHHHHHHHHH
T ss_pred -----------HHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCccccCCCCcchHHHhhhhhHHHHHhh
Confidence 22333333344445566666666666666666666666 6665543
Q ss_pred ------------------------------cCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHh
Q 004887 131 ------------------------------CGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVV 180 (725)
Q Consensus 131 ------------------------------~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA~~ 180 (725)
.+..|.||||+|+..++....+++++|++.|++++.+|..|+||||+|+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~ 256 (351)
T 3utm_A 177 FKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAE 256 (351)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred hcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHH
Confidence 02344566666666644334566666666666666666666666666666
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCccccccccccccccCCCCC-----CCCCCCccccccCCCCccccc
Q 004887 181 HPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSS-----SDDSSLSSLTCKSDDVHAFVA 243 (725)
Q Consensus 181 ~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~ass~ls~s-----~~~~~~~~~~~~~G~TpL~~A 243 (725)
.|+. +++++|+++|++++.+|..|.||++.+....... .+.+.+++..+..|.|||++|
T Consensus 257 ~g~~----~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a 320 (351)
T 3utm_A 257 RAHN----DVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG 320 (351)
T ss_dssp TTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS
T ss_pred cCCH----HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh
Confidence 5333 3666666666666666666666655544311111 122455556666667777766
No 19
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.95 E-value=8.2e-28 Score=234.69 Aligned_cols=151 Identities=34% Similarity=0.344 Sum_probs=130.7
Q ss_pred cHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccchhHHH
Q 004887 14 SPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMIGL 85 (725)
Q Consensus 14 TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~~~~L 85 (725)
++|+.| |++|+++|+|||.+|. +|+||||+|+..++.++ +.+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~--~g~t~l~~a~~~~~~~~----------------------------~~~ 55 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDS--DGRTPLHHAAENGHKEV----------------------------VKL 55 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--TSCCHHHHHHHTTCHHH----------------------------HHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCC--CCCCHHHHHHHcCCHHH----------------------------HHH
Confidence 468888 8999999999999998 99999999997655443 334
Q ss_pred HHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCC
Q 004887 86 WYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSN 165 (725)
Q Consensus 86 ~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin 165 (725)
++..+.+.+..+.+|+||||+|+..|+.++|++||++ |+|||.+ |.+|+||||+||..|+ .++|++||++|+|++
T Consensus 56 ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-gadvn~~-d~~G~TpLh~A~~~g~---~~~v~~Ll~~gad~~ 130 (169)
T 4gpm_A 56 LISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK-GADVNAK-DSDGRTPLHHAAENGH---KEVVKLLISKGADVN 130 (169)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTT
T ss_pred HHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCcc
Confidence 5555666777788999999999999999999999999 9999999 9999999999999999 999999999999999
Q ss_pred CcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCCCCCC
Q 004887 166 LTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSF 203 (725)
Q Consensus 166 ~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Gadvn~ 203 (725)
.+|.+|+||||+|+..|+ .+++++|+++||+++.
T Consensus 131 ~~d~~G~TpL~~A~~~g~----~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 131 TSDSDGRTPLDLAREHGN----EEVVKLLEKQGGWLEH 164 (169)
T ss_dssp CCCTTSCCHHHHHHHTTC----HHHHHHHHTC------
T ss_pred ccCCCCCCHHHHHHHcCC----HHHHHHHHHCCCCcCC
Confidence 999999999999999854 5599999999999975
No 20
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.95 E-value=6.7e-29 Score=270.47 Aligned_cols=207 Identities=18% Similarity=0.152 Sum_probs=129.6
Q ss_pred cCCccCC-CCCCcHHHHH--------HH--------HHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcc
Q 004887 3 AVPAVTM-RNKSSPLKIS--------IS--------IFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKA 65 (725)
Q Consensus 3 Adpdv~d-~~G~TPLhiA--------vk--------lLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~l 65 (725)
+++|..| ..|+||||+| ++ .|++.|+++|.+|. +|+||||+|+..|+.+++....
T Consensus 115 ~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~--~g~TpL~~A~~~g~~~iv~~Ll------ 186 (373)
T 2fo1_E 115 ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC--DENTPLMLAVLARRRRLVAYLM------ 186 (373)
T ss_dssp TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCT--TSCCHHHHHHHHTCHHHHHHHH------
T ss_pred ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCC--CCCCHHHHHHHcChHHHHHHHH------
Confidence 6788888 7999999999 33 34589999999998 9999999999887776543221
Q ss_pred cCCCCCCCCCCCccchhHHHHHHhhCCchh-----------------hhcCCChHHHHHHHcC---CHHHHHHHHhcCCC
Q 004887 66 LAPSASPPSKPSLQRNMIGLWYSFQRLSKK-----------------IVLQHRTPLMVAAEYG---SVDVVKLILSLTKA 125 (725)
Q Consensus 66 L~~aa~~~~~~~~~~~~~~L~~a~~~g~~~-----------------~~~~G~TPLh~Aa~~G---~~eiVk~LLe~~Ga 125 (725)
..++... ..+..+.++|++++..+..+ .+..|.||||+|+..| +.+++++|+++ |+
T Consensus 187 -~~ga~~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~-g~ 262 (373)
T 2fo1_E 187 -KAGADPT--IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEK-GA 262 (373)
T ss_dssp -HTTCCSC--CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHH-TC
T ss_pred -HCCCCCc--ccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHC-CC
Confidence 1111111 11223344444444433222 1244556666666555 55566666665 55
Q ss_pred Cccc--------ccCCCCchHHHHHHhCCCCCHHHHHHHHHHCC-CCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHH
Q 004887 126 DVNL--------TCGLDKSTALHCAASGGSVNAVDVVKLLLFAG-ADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLK 196 (725)
Q Consensus 126 dVN~--------~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~G-ADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~ 196 (725)
+++. . +..|.||||+|+..|+ .++|++||+.| ++++.+|..|+||||+|+..|+ .+++++|++
T Consensus 263 ~~~~~~~~~~~~~-d~~g~t~Lh~A~~~g~---~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~----~~iv~~Ll~ 334 (373)
T 2fo1_E 263 KVDYDGAARKDSE-KYKGRTALHYAAQVSN---MPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR----IEVVMYLIQ 334 (373)
T ss_dssp CSSCCSGGGTSSS-SCCCCCTHHHHHSSCC---HHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTC----HHHHHHHHH
T ss_pred CcccccccccCcc-cccCCCHHHHHHHhCC---HHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCC----HHHHHHHHH
Confidence 5554 2 4455666666666665 56666666543 5666666666666666665433 336666666
Q ss_pred CCCCCCCccccccccccccccCCCCCCCCCCCccccccCCCCcccccccCCCcCccCCCCc
Q 004887 197 NGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPIDPSLPD 257 (725)
Q Consensus 197 ~Gadvn~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~~G~TpL~~A~e~g~~~vd~~Lpd 257 (725)
+|++++ .+|..|.|||++|+++|+.+|+..|..
T Consensus 335 ~gad~~----------------------------~~d~~g~t~l~~A~~~g~~~iv~~Ll~ 367 (373)
T 2fo1_E 335 QGASVE----------------------------AVDATDHTARQLAQANNHHNIVDIFDR 367 (373)
T ss_dssp TTCCSS----------------------------CCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred cCCCcc----------------------------CCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 665554 677788899999999999999865543
No 21
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.95 E-value=1.4e-27 Score=238.97 Aligned_cols=197 Identities=17% Similarity=0.124 Sum_probs=139.7
Q ss_pred CCcHHHHH--------HHHHHHCCCCccC-cCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccchh
Q 004887 12 KSSPLKIS--------ISIFQKHTQNVFL-VDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNM 82 (725)
Q Consensus 12 G~TPLhiA--------vklLL~~GADVN~-~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~~ 82 (725)
|.||||+| ++.|++.|.+++. +|. .|+||||+|+..++.++..
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~--~g~t~L~~A~~~~~~~~v~-------------------------- 53 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQ--DGRIPLHWSVSFQAHEITS-------------------------- 53 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCT--TSCCHHHHHHHTTCHHHHH--------------------------
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCC--CCCCHHHHHHHcCCHHHHH--------------------------
Confidence 78999999 7788888888766 565 8999999999876665532
Q ss_pred HHHHHHhh--CCchh-hhcCCChHHHHHHHcCCHHHHHHHHhcCC--CCcccccCCCCchHHHHHHhCCCCCHHHHHHHH
Q 004887 83 IGLWYSFQ--RLSKK-IVLQHRTPLMVAAEYGSVDVVKLILSLTK--ADVNLTCGLDKSTALHCAASGGSVNAVDVVKLL 157 (725)
Q Consensus 83 ~~L~~a~~--~g~~~-~~~~G~TPLh~Aa~~G~~eiVk~LLe~~G--adVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklL 157 (725)
+++..+ .+... .+..|.||||+|+..|+.+++++|+++ | ++++.. +..|.||||+|+..|+ .+++++|
T Consensus 54 --~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~L 126 (228)
T 2dzn_A 54 --FLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDR-PLKPDLNKI-TNQGVTCLHLAVGKKW---FEVSQFL 126 (228)
T ss_dssp --HHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSS-SSCCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHH
T ss_pred --HHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCcccccC-CcCCCCHHHHHHHcCC---HhHHHHH
Confidence 222222 22222 345677777777777777777777777 6 777776 7777777777777777 7777777
Q ss_pred HHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCC-CCCCCccccccccccccccCCCCC-----C-CCCCCcc
Q 004887 158 LFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNG-GSVSFDELQVSSVDLRSSSSLSSS-----S-DDSSLSS 230 (725)
Q Consensus 158 L~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~G-advn~~d~~g~Tp~~~ass~ls~s-----~-~~~~~~~ 230 (725)
++.|++++.+|..|+||||+|+..|+ .+++++|+++| ++++.+|..|.||++.+....... . +.+.+++
T Consensus 127 l~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~ 202 (228)
T 2dzn_A 127 IENGASVRIKDKFNQIPLHRAASVGS----LKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 202 (228)
T ss_dssp HHTTCCSCCCCTTSCCHHHHHHHTTC----HHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSC
T ss_pred HHcCCCccccCCCCCCHHHHHHHcCC----HHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCC
Confidence 77777777777777777777777643 34777777777 777777777777777665422111 2 2266777
Q ss_pred ccccCCCCcccccccCC
Q 004887 231 LTCKSDDVHAFVAPEKK 247 (725)
Q Consensus 231 ~~~~~G~TpL~~A~e~g 247 (725)
.+|..|.|||++|.+++
T Consensus 203 ~~~~~g~t~l~~A~~~~ 219 (228)
T 2dzn_A 203 LVDNKGAKAEDVALNEQ 219 (228)
T ss_dssp CBCTTSCBGGGGCSSTT
T ss_pred ccCCCCCcHHHHHHHHH
Confidence 88889999999997654
No 22
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.95 E-value=6.8e-27 Score=235.56 Aligned_cols=182 Identities=19% Similarity=0.207 Sum_probs=144.3
Q ss_pred ccCCccCCCCCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCC
Q 004887 2 VAVPAVTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPP 73 (725)
Q Consensus 2 ~Adpdv~d~~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~ 73 (725)
.++++..|..|.||||+| +++|+++|++++.+|. .|+||||+|+..++.++........... .. .
T Consensus 36 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--~g~t~l~~A~~~~~~~~~~~Ll~~~~~~---~~--~ 108 (241)
T 1k1a_A 36 GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDR--HGQTAAHLACEHRSPTCLRALLDSAAPG---TL--D 108 (241)
T ss_dssp TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--TSCCHHHHHHHTTCHHHHHHHHHHSCTT---SC--C
T ss_pred CCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC--CCCCHHHHHHHcCCHHHHHHHHHcCCCc---cc--c
Confidence 368999999999999999 8899999999999998 9999999999998887744332221100 00 0
Q ss_pred CCCCccchhHHHHHHhhCCchhh--------------h-cCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchH
Q 004887 74 SKPSLQRNMIGLWYSFQRLSKKI--------------V-LQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTA 138 (725)
Q Consensus 74 ~~~~~~~~~~~L~~a~~~g~~~~--------------~-~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~Tp 138 (725)
....+..+.++|++++..+..++ + ..|.||||+|+..|+.+++++|+++ |+++|.+ +..|.||
T Consensus 109 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~ 186 (241)
T 1k1a_A 109 LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH-GANVNAQ-MYSGSSA 186 (241)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCB-CTTSCBH
T ss_pred ccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCc-CCCCCCH
Confidence 01122344556666655544333 3 5699999999999999999999999 9999999 9999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCC
Q 004887 139 LHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGG 199 (725)
Q Consensus 139 LH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Ga 199 (725)
||+|+..|+ .++|++|+++|+|++.+|..|+||||+|+.. +..++++.|+++++
T Consensus 187 L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~----~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 187 LHSASGRGL---LPLVRTLVRSGADSSLKNCHNDTPLMVARSR----RVIDILRGKATRPA 240 (241)
T ss_dssp HHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCTTTTCSSH----HHHHHHTC------
T ss_pred HHHHHHcCC---HHHHHHHHhcCCCCCCcCCCCCCHHHHHHhc----CcHHHHhhhccCCC
Confidence 999999999 9999999999999999999999999999986 66779999988765
No 23
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.94 E-value=2.8e-28 Score=246.69 Aligned_cols=186 Identities=20% Similarity=0.186 Sum_probs=149.9
Q ss_pred ccCCCCCCcHHHHH--------HHHHHHCC----CCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCC
Q 004887 6 AVTMRNKSSPLKIS--------ISIFQKHT----QNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPP 73 (725)
Q Consensus 6 dv~d~~G~TPLhiA--------vklLL~~G----ADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~ 73 (725)
+.+|.+|.||||+| +++|++.+ +++|.+|. .|+||||+|+..++.+++.. ++..++
T Consensus 2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~--~g~t~L~~A~~~~~~~~v~~-------Ll~~g~--- 69 (236)
T 1ikn_D 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN--LQQTPLHLAVITNQPEIAEA-------LLGAGC--- 69 (236)
T ss_dssp -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCT--TCCCHHHHHHHTTCHHHHHC-------CCSCCC---
T ss_pred CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCC--CCCCHHHHHHHcCCHHHHHH-------HHHcCC---
Confidence 46789999999999 44566554 48999998 99999999998877665433 222222
Q ss_pred CCCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCC------cccccCCCCchHHHHHHhCCC
Q 004887 74 SKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKAD------VNLTCGLDKSTALHCAASGGS 147 (725)
Q Consensus 74 ~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~Gad------VN~~~d~~G~TpLH~Aa~~G~ 147 (725)
+.+..+..|.||||+|+..|+.+++++|++. |++ ++.. +..|.||||+|+..|+
T Consensus 70 ------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~ 129 (236)
T 1ikn_D 70 ------------------DPELRDFRGNTPLHLACEQGCLASVGVLTQS-CTTPHLHSILKAT-NYNGHTCLHLASIHGY 129 (236)
T ss_dssp ------------------CSCCCCTTCCCHHHHHHHHTCHHHHHHHHHS-TTTTSSSCGGGCC-CTTCCCHHHHHHHTTC
T ss_pred ------------------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc-ccchhHHHHhhcc-CCCCCCHHHHHHHcCC
Confidence 2333456899999999999999999999999 765 5666 8899999999999999
Q ss_pred CCHHHHHHHHHHCCCCCCCcCC-CCCcHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCccccccccccccccCCCCCCCCC
Q 004887 148 VNAVDVVKLLLFAGADSNLTDA-HGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDS 226 (725)
Q Consensus 148 ~~~~eiVklLL~~GADin~~D~-~G~TPLhlA~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~ass~ls~s~~~~ 226 (725)
.++|++||++|++++.+|. .|+||||+|+..|+ .+++++|+++|++++.
T Consensus 130 ---~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~----~~~v~~Ll~~ga~~~~----------------------- 179 (236)
T 1ikn_D 130 ---LGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN----PDLVSLLLKCGADVNR----------------------- 179 (236)
T ss_dssp ---HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC----HHHHHHHHTTTCCSCC-----------------------
T ss_pred ---HHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHcCCCCCc-----------------------
Confidence 9999999999999999998 99999999999854 5599999999999984
Q ss_pred CCccccccCCCCcccccccCCCcCccCCCCcc
Q 004887 227 SLSSLTCKSDDVHAFVAPEKKEYPIDPSLPDI 258 (725)
Q Consensus 227 ~~~~~~~~~G~TpL~~A~e~g~~~vd~~Lpdi 258 (725)
++..|.||||+|+..++.+++..|.+.
T Consensus 180 -----~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 206 (236)
T 1ikn_D 180 -----VTYQGYSPYQLTWGRPSTRIQQQLGQL 206 (236)
T ss_dssp -----CCTTCCCGGGGCTTSSCHHHHHHHHTT
T ss_pred -----ccCCCCCHHHHHHccCchHHHHHHHHc
Confidence 566777889999999999988766554
No 24
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.94 E-value=3.8e-27 Score=241.82 Aligned_cols=175 Identities=18% Similarity=0.127 Sum_probs=150.3
Q ss_pred cCCc-cCCCCCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCC
Q 004887 3 AVPA-VTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPP 73 (725)
Q Consensus 3 Adpd-v~d~~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~ 73 (725)
++++ ..|.+|+||||+| +++|+++|++++.+|. .|+||||+|+..++.+++.
T Consensus 47 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--~g~t~L~~A~~~~~~~~v~----------------- 107 (253)
T 1yyh_A 47 ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDN--MGRTPLHAAVSADAQGVFQ----------------- 107 (253)
T ss_dssp -----CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--TSCCHHHHHHHHTCHHHHH-----------------
T ss_pred CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CCCCHHHHHHHcCCHHHHH-----------------
Confidence 4453 3588999999999 8899999999999998 9999999999876665432
Q ss_pred CCCCccchhHHHHHHhhC-CchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHH
Q 004887 74 SKPSLQRNMIGLWYSFQR-LSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVD 152 (725)
Q Consensus 74 ~~~~~~~~~~~L~~a~~~-g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~e 152 (725)
+++..+. ..+..+..|.||||+|+..|+.+++++||+. |+++|.+ +..|.||||+|+..|+ .+
T Consensus 108 -----------~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-d~~g~t~L~~A~~~~~---~~ 171 (253)
T 1yyh_A 108 -----------ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAV-DDLGKSALHWAAAVNN---VD 171 (253)
T ss_dssp -----------HHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHT-TCCTTCB-CTTSCBHHHHHHHHTC---HH
T ss_pred -----------HHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCC---HH
Confidence 2222222 3444567899999999999999999999999 9999999 9999999999999999 99
Q ss_pred HHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCccccccccccccc
Q 004887 153 VVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSS 216 (725)
Q Consensus 153 iVklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~as 216 (725)
+|++|+++|++++.+|..|+||||+|+..|+ .+++++|+++|++++.+|..|.||.+.+.
T Consensus 172 ~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~----~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~ 231 (253)
T 1yyh_A 172 AAVVLLKNGANKDMQNNREETPLFLAAREGS----YETAKVLLDHFANRDITDHMDRLPRDIAQ 231 (253)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC----HHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred HHHHHHHcCCCCCCcCCCCCCHHHHHHHCCC----HHHHHHHHHcCCCccccccCCCCHHHHHH
Confidence 9999999999999999999999999999754 45999999999999999999999987654
No 25
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.94 E-value=5.7e-28 Score=247.41 Aligned_cols=201 Identities=18% Similarity=0.143 Sum_probs=154.5
Q ss_pred CCCcHHHHH------------HHHHHHCCCCccC----cCCCCCCChHHHHHHHc---CChhhhcCchhhhhcccCCCCC
Q 004887 11 NKSSPLKIS------------ISIFQKHTQNVFL----VDFAINDRTLLILLFFQ---NYLIMCGGSEKLSSKALAPSAS 71 (725)
Q Consensus 11 ~G~TPLhiA------------vklLL~~GADVN~----~D~D~~G~TpLHlAa~~---g~~ei~ga~~~l~~~lL~~aa~ 71 (725)
.|+||||+| +++|+++|+++|. +|. .|+||||+|+.. ++.+++....+.+...-....
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~--~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~- 77 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGS--TGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKP- 77 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTT--TTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSC-
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCC--CCCCHHHHHHHccccchHHHHHHHHhcCCcccchhh-
Confidence 388999999 4677889999998 787 999999999977 555543222211111000000
Q ss_pred CCCCCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCC-------------CchH
Q 004887 72 PPSKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLD-------------KSTA 138 (725)
Q Consensus 72 ~~~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~-------------G~Tp 138 (725)
.........+..|.||||+|+..|+.++|++||++ |+++|.+ +.. |.||
T Consensus 78 ----------------~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~-~~~~~~~~~~~~~~~~g~tp 139 (256)
T 2etb_A 78 ----------------LVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVEN-GADVHLR-ACGRFFQKHQGTCFYFGELP 139 (256)
T ss_dssp ----------------GGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CCSGGGSCCSSSCCCSCSSH
T ss_pred ----------------hcccccccccccCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcc-cccccccccccccccCCCCH
Confidence 00111222346799999999999999999999999 9999998 665 9999
Q ss_pred HHHHHhCCCCCHHHHHHHHHH---CCCCCCCcCCCCCcHHHHHHhCCCCCCHHH-------HHHHHHHCCCCCCCccccc
Q 004887 139 LHCAASGGSVNAVDVVKLLLF---AGADSNLTDAHGNRPFDVIVVHPNVPDSRV-------SLEDLLKNGGSVSFDELQV 208 (725)
Q Consensus 139 LH~Aa~~G~~~~~eiVklLL~---~GADin~~D~~G~TPLhlA~~~g~~e~~~~-------ivelLL~~Gadvn~~d~~g 208 (725)
||+|+..|+ .++|++||+ .|+|++.+|.+|+||||+|+..++ +..+ ++++|+++|++++....
T Consensus 140 L~~A~~~~~---~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~--~~~~~~~~~~~iv~~Ll~~ga~~~~~~~-- 212 (256)
T 2etb_A 140 LSLAACTKQ---WDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD--NSPENSALVIHMYDGLLQMGARLCPTVQ-- 212 (256)
T ss_dssp HHHHHHTTC---HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCC--SCHHHHHHHHHHHHHHHHHHHHHSTTCC--
T ss_pred HHHHHHcCC---HHHHHHHHhccccCCCcCccCCCCCCHHHHHHHccc--CCchhhHHHHHHHHHHHHcCCCcccccc--
Confidence 999999999 999999999 999999999999999999998322 3344 99999999998842110
Q ss_pred cccccccccCCCCCCCCCCCccccccCCCCcccccccCCCcCccCCCCcc
Q 004887 209 SSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPIDPSLPDI 258 (725)
Q Consensus 209 ~Tp~~~ass~ls~s~~~~~~~~~~~~~G~TpL~~A~e~g~~~vd~~Lpdi 258 (725)
..+.++..|.||||+|+++|+.+++..|.+.
T Consensus 213 -------------------~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 243 (256)
T 2etb_A 213 -------------------LEEISNHQGLTPLKLAAKEGKIEIFRHILQR 243 (256)
T ss_dssp -------------------GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred -------------------cccccCCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence 0136788899999999999999998766543
No 26
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.94 E-value=2.2e-27 Score=251.37 Aligned_cols=224 Identities=21% Similarity=0.134 Sum_probs=159.5
Q ss_pred ccCCccCCCCCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCC
Q 004887 2 VAVPAVTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPP 73 (725)
Q Consensus 2 ~Adpdv~d~~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~ 73 (725)
.+|++..|.+|.||||+| +++|+++|++++..|. .|+||||+|+..++.+++....+. .+.+.
T Consensus 81 g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~-------g~~~~ 151 (351)
T 3utm_A 81 GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDL--WQFTPLHEAASKNRVEVCSLLLSH-------GADPT 151 (351)
T ss_dssp TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--TCCCHHHHHHHTTCHHHHHHHHHT-------TCCTT
T ss_pred CCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHc-------CCCCc
Confidence 579999999999999999 8899999999999998 999999999999888774332221 11111
Q ss_pred CCCCccchhHHHH---------------------HHhhCCch--------------hhhcCCChHHHHHHHc---CCHHH
Q 004887 74 SKPSLQRNMIGLW---------------------YSFQRLSK--------------KIVLQHRTPLMVAAEY---GSVDV 115 (725)
Q Consensus 74 ~~~~~~~~~~~L~---------------------~a~~~g~~--------------~~~~~G~TPLh~Aa~~---G~~ei 115 (725)
. .+..+.++++ .++..+.. ..+..|.||||+|+.. +..++
T Consensus 152 ~--~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ 229 (351)
T 3utm_A 152 L--VNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQV 229 (351)
T ss_dssp C--CCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHH
T ss_pred c--ccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHH
Confidence 0 0111112222 22222211 1235789999999999 55899
Q ss_pred HHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHH
Q 004887 116 VKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLL 195 (725)
Q Consensus 116 Vk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL 195 (725)
+++|++. |+++|.+ +.+|.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+..|+ .+++++|+
T Consensus 230 ~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~----~~~v~~Ll 300 (351)
T 3utm_A 230 AELLLRK-GANVNEK-NKDFMTPLHVAAERAH---NDVMEVLHKHGAKMNALDSLGQTALHRAALAGH----LQTCRLLL 300 (351)
T ss_dssp HHHHHHT-TCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC----HHHHHHHH
T ss_pred HHHHHHc-CCCcCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc----HHHHHHHH
Confidence 9999999 9999999 9999999999999999 999999999999999999999999999999855 45999999
Q ss_pred HCCCCCCCccccccccccccccCCCCCCCCCCCccccccCCCCcccccccCC
Q 004887 196 KNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKK 247 (725)
Q Consensus 196 ~~Gadvn~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~~G~TpL~~A~e~g 247 (725)
++|++++.+|..|.||.+.+........ ..........+.++|..|+++|
T Consensus 301 ~~gad~~~~~~~g~tal~~a~~~~~~~l--~~~~~~~~~~~~~~l~~A~~~g 350 (351)
T 3utm_A 301 SYGSDPSIISLQGFTAAQMGNEAVQQIL--SESTPMRTSDVDYRLLEASKAG 350 (351)
T ss_dssp HTTCCTTCCCTTSCCHHHHSCHHHHHHH--HHC-------------------
T ss_pred HcCCCCCCcCCCCCChhhhhhHHHHHHH--HhccccccCcceeehhhhhccC
Confidence 9999999999999999877533111111 1112244556778888888776
No 27
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.94 E-value=1.6e-27 Score=244.71 Aligned_cols=210 Identities=22% Similarity=0.134 Sum_probs=179.6
Q ss_pred CCCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccch
Q 004887 10 RNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRN 81 (725)
Q Consensus 10 ~~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~ 81 (725)
.+|.||||.| +++|++.|++++..+ +..|+||||+|+..++.+++
T Consensus 3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~g~t~L~~A~~~g~~~~v-------------------------- 55 (285)
T 1wdy_A 3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-EEGGWTPLHNAVQMSREDIV-------------------------- 55 (285)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTTCCCHHHHHHHTTCHHHH--------------------------
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCccccc-CCCCCcHHHHHHHcCCHHHH--------------------------
Confidence 3588999999 889999999999994 34899999999987665543
Q ss_pred hHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCC
Q 004887 82 MIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161 (725)
Q Consensus 82 ~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~G 161 (725)
.+++..+.+.+..+..|.||||+|+..|+.+++++|+++ |++++.. +..|.||||+|+..|+ .+++++|++.|
T Consensus 56 --~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g 128 (285)
T 1wdy_A 56 --ELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK-GADVNEC-DFYGFTAFMEAAVYGK---VKALKFLYKRG 128 (285)
T ss_dssp --HHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCB-CTTCCBHHHHHHHTTC---HHHHHHHHHTT
T ss_pred --HHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcc-CcccCCHHHHHHHhCC---HHHHHHHHHhC
Confidence 244444555555677899999999999999999999999 9999999 9999999999999999 99999999999
Q ss_pred CCCCCc----------CCCCCcHHHHHHhCCCCCCHHHHHHHHHHC-CCCCCCccccccccccccccCCCC---------
Q 004887 162 ADSNLT----------DAHGNRPFDVIVVHPNVPDSRVSLEDLLKN-GGSVSFDELQVSSVDLRSSSSLSS--------- 221 (725)
Q Consensus 162 ADin~~----------D~~G~TPLhlA~~~g~~e~~~~ivelLL~~-Gadvn~~d~~g~Tp~~~ass~ls~--------- 221 (725)
++++.. +..|.||||+|+..|+ .+++++|+++ |++++..|..|.||++.+......
T Consensus 129 ~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~ 204 (285)
T 1wdy_A 129 ANVNLRRKTKEDQERLRKGGATALMDAAEKGH----VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHL 204 (285)
T ss_dssp CCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTC----HHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHH
T ss_pred CCcccccccHHHHHhhccCCCcHHHHHHHcCC----HHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHH
Confidence 999988 7889999999999755 4599999998 999999999999999887662221
Q ss_pred CCCCCCCccccccCCCCcccccccCCCcCccCCCCc
Q 004887 222 SSDDSSLSSLTCKSDDVHAFVAPEKKEYPIDPSLPD 257 (725)
Q Consensus 222 s~~~~~~~~~~~~~G~TpL~~A~e~g~~~vd~~Lpd 257 (725)
..+.+.+++.++..|.||||+|++.++.+++..|.+
T Consensus 205 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 122377889999999999999999999999776654
No 28
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.94 E-value=1.6e-26 Score=232.99 Aligned_cols=177 Identities=23% Similarity=0.208 Sum_probs=156.3
Q ss_pred ccCCccCCCCCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCC
Q 004887 2 VAVPAVTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPP 73 (725)
Q Consensus 2 ~Adpdv~d~~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~ 73 (725)
.++++..+.+|.||||+| +++|+++|++++.++. .|.||||+|+..++.++...
T Consensus 34 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--~g~t~L~~A~~~~~~~~~~~---------------- 95 (237)
T 3b7b_A 34 GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDA--EGSTCLHLAAKKGHYEVVQY---------------- 95 (237)
T ss_dssp TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCT--TSCCHHHHHHHTTCHHHHHH----------------
T ss_pred CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCC--CCCcHHHHHHHcCCHHHHHH----------------
Confidence 478999999999999999 8899999999999998 99999999998776655322
Q ss_pred CCCCccchhHHHHHHhh-CCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHH
Q 004887 74 SKPSLQRNMIGLWYSFQ-RLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVD 152 (725)
Q Consensus 74 ~~~~~~~~~~~L~~a~~-~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~e 152 (725)
++..+ ...+..+..|.||||+|+..|+.+++++|+++ |++++.+ +..|.||||+|+..|+ .+
T Consensus 96 ------------Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~ 158 (237)
T 3b7b_A 96 ------------LLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK-GSDINIR-DNEENICLHWAAFSGC---VD 158 (237)
T ss_dssp ------------HHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHHCC---HH
T ss_pred ------------HHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCcc-CCCCCCHHHHHHHCCC---HH
Confidence 22222 23344456899999999999999999999999 9999999 9999999999999999 99
Q ss_pred HHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCcccccccccccccc
Q 004887 153 VVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSS 217 (725)
Q Consensus 153 iVklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~ass 217 (725)
++++|++.|++++.+|..|.||||+|+..+ ..+++++|+++|++++.+|..|.||.+.+..
T Consensus 159 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~----~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~ 219 (237)
T 3b7b_A 159 IAEILLAAKCDLHAVNIHGDSPLHIAAREN----RYDCVVLFLSRDSDVTLKNKEGETPLQCASL 219 (237)
T ss_dssp HHHHHHTTTCCTTCCCTTCCCHHHHHHHTT----CHHHHHHHHTTTCCTTCCCTTSCCHHHHSCT
T ss_pred HHHHHHHcCCCCCCcCCCCCCHHHHHHHhC----CHhHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence 999999999999999999999999999984 4559999999999999999999999877643
No 29
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.94 E-value=4.9e-27 Score=245.00 Aligned_cols=191 Identities=19% Similarity=0.136 Sum_probs=102.0
Q ss_pred CCCCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccc
Q 004887 9 MRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQR 80 (725)
Q Consensus 9 d~~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~ 80 (725)
+.+|.||||.| +++|+++|+++|..|. .|+||||+|+..|+.+++....+ .++..+ ..+..
T Consensus 37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~-------~ga~~~--~~~~~ 105 (299)
T 1s70_B 37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYANV--DGLTALHQACIDDNVDMVKFLVE-------NGANIN--QPDNE 105 (299)
T ss_dssp EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCT--TCCBHHHHHHHTTCHHHHHHHHH-------TTCCTT--CCCTT
T ss_pred ccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCC--CCCCHHHHHHHcCCHHHHHHHHH-------CCCCCC--CCCCC
Confidence 34566777776 6677777777777766 67777777776655544221111 111000 00011
Q ss_pred hhHHHH--------------HHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCccc-----------------
Q 004887 81 NMIGLW--------------YSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNL----------------- 129 (725)
Q Consensus 81 ~~~~L~--------------~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~----------------- 129 (725)
+.++|+ +..+.+.+..+..|.||||+|+..|+.+++++|+...+++++.
T Consensus 106 g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (299)
T 1s70_B 106 GWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWL 185 (299)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHH
Confidence 111111 1122222222334555555555555555555444433333322
Q ss_pred --------ccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCCCC
Q 004887 130 --------TCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSV 201 (725)
Q Consensus 130 --------~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Gadv 201 (725)
..+..|.||||+|+..|+ .++|++|++.|+|++.+|..|+||||+|+..|+. +++++|+++|+++
T Consensus 186 ~~~~~~~~~~~~~g~t~L~~A~~~g~---~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~----~~v~~Ll~~gad~ 258 (299)
T 1s70_B 186 NSGHINDVRHAKSGGTALHVAAAKGY---TEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKE----EACRILVENLCDM 258 (299)
T ss_dssp HHTCCCCCCCTTTCCCHHHHHHHHTC---HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCH----HHHHHHHHTTCCT
T ss_pred hccCcchhhhcCCCCCHHHHHHHCCc---HHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCH----HHHHHHHHcCCCC
Confidence 013456666666666666 6666666666666666666666666666665333 3666666666666
Q ss_pred CCccccccccccccccCCCCCCCCCCCccccccCCCCccccccc
Q 004887 202 SFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPE 245 (725)
Q Consensus 202 n~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~~G~TpL~~A~e 245 (725)
+ .+|..|.|||++|.+
T Consensus 259 ~----------------------------~~d~~g~t~l~~A~~ 274 (299)
T 1s70_B 259 E----------------------------AVNKVGQTAFDVADE 274 (299)
T ss_dssp T----------------------------CCCTTSCCTTTSCCS
T ss_pred C----------------------------CcCCCCCCHHHHHHH
Confidence 5 567778888999865
No 30
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.94 E-value=4.7e-27 Score=230.84 Aligned_cols=186 Identities=20% Similarity=0.143 Sum_probs=157.7
Q ss_pred CCCCCcHHHHH--------HHHHHHCCC-CccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCcc
Q 004887 9 MRNKSSPLKIS--------ISIFQKHTQ-NVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQ 79 (725)
Q Consensus 9 d~~G~TPLhiA--------vklLL~~GA-DVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~ 79 (725)
+..+.||||.| ++.|++.+. ++|..|. +|+||||+|+..++.+++
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~--~g~t~L~~A~~~~~~~~v------------------------ 55 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDT--EGNTPLNIAVHNNDIEIA------------------------ 55 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCT--TSCCHHHHHHHHTCHHHH------------------------
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCC--CCCCHHHHHHHcCCHHHH------------------------
Confidence 45789999999 667777765 9999998 999999999987665443
Q ss_pred chhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHH
Q 004887 80 RNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLF 159 (725)
Q Consensus 80 ~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~ 159 (725)
.+++..+.+.+..+..|.||||+|+..|+.+++++|++..+++++.. +..|.||||+|+..|+ .+++++|++
T Consensus 56 ----~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~ 127 (201)
T 3hra_A 56 ----KALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKH-NRYGGNALIPAAEKGH---IDNVKLLLE 127 (201)
T ss_dssp ----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCC-CTTSCCSHHHHHHTTC---HHHHHHHHH
T ss_pred ----HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccc-cCCCCcHHHHHHHcCC---HHHHHHHHH
Confidence 34445555666667889999999999999999999996658999999 9999999999999999 999999999
Q ss_pred CC-CCCCCcCCCCCcHHHHHHhCCC-CCCHHHHHHHHHHCCCCCCCccccccccccccccCCCCCCCCCCCccccccCCC
Q 004887 160 AG-ADSNLTDAHGNRPFDVIVVHPN-VPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDD 237 (725)
Q Consensus 160 ~G-ADin~~D~~G~TPLhlA~~~g~-~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~~G~ 237 (725)
.| ++++.+|..|+||||+|+..++ .....+++++|+++|++++. ++..|.
T Consensus 128 ~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~----------------------------~~~~g~ 179 (201)
T 3hra_A 128 DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI----------------------------KDNSGR 179 (201)
T ss_dssp HCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTC----------------------------CCTTSC
T ss_pred cCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCc----------------------------cCCCCC
Confidence 99 9999999999999999998765 22347899999999999984 566777
Q ss_pred CcccccccCCCcCccCCCC
Q 004887 238 VHAFVAPEKKEYPIDPSLP 256 (725)
Q Consensus 238 TpL~~A~e~g~~~vd~~Lp 256 (725)
||||+|+++|+.+++..|.
T Consensus 180 t~l~~A~~~~~~~~~~~Ll 198 (201)
T 3hra_A 180 TAMDYANQKGYTEISKILA 198 (201)
T ss_dssp CHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHcCCHhHHHHHH
Confidence 8899999999988875443
No 31
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.94 E-value=2.7e-27 Score=237.10 Aligned_cols=216 Identities=16% Similarity=0.117 Sum_probs=173.5
Q ss_pred CCccCCCCCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCC
Q 004887 4 VPAVTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSK 75 (725)
Q Consensus 4 dpdv~d~~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~ 75 (725)
+++..|..|.||||.| +++|++.|++++.++. .|.||||+|+..++.+++.
T Consensus 1 h~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~--~g~t~L~~A~~~~~~~~v~------------------- 59 (240)
T 3eu9_A 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDK--ENVTLLHWAAINNRIDLVK------------------- 59 (240)
T ss_dssp -CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCT--TSCCHHHHHHHTTCHHHHH-------------------
T ss_pred CccccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCC--CCCCHHHHHHHhCCHHHHH-------------------
Confidence 4678899999999999 8899999999999998 9999999999877665532
Q ss_pred CCccchhHHHHHHhhCCchhhh-cCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHH
Q 004887 76 PSLQRNMIGLWYSFQRLSKKIV-LQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVV 154 (725)
Q Consensus 76 ~~~~~~~~~L~~a~~~g~~~~~-~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiV 154 (725)
+++..+....... ..|.||||+|+..|+.+++++|++. |++++.. +..|.||||+|+..|+ .+++
T Consensus 60 ---------~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~l~~A~~~~~---~~~~ 125 (240)
T 3eu9_A 60 ---------YYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY-GADPSLI-DGEGCSCIHLAAQFGH---TSIV 125 (240)
T ss_dssp ---------HHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHH
T ss_pred ---------HHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHc-CCCCccc-CCCCCCHHHHHHHcCH---HHHH
Confidence 2222222222222 3488999999999999999999998 9999988 8889999999999998 8999
Q ss_pred HHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCccc-cccccccccccCCCCC-----CCCCCC
Q 004887 155 KLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDEL-QVSSVDLRSSSSLSSS-----SDDSSL 228 (725)
Q Consensus 155 klLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Gadvn~~d~-~g~Tp~~~ass~ls~s-----~~~~~~ 228 (725)
++|++.|++++.+|..|.||||+|+..++ ..+++++|++.|++++..+. .|.||++.+....... .+.+.+
T Consensus 126 ~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~---~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 202 (240)
T 3eu9_A 126 AYLIAKGQDVDMMDQNGMTPLMWAAYRTH---SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN 202 (240)
T ss_dssp HHHHHTTCCTTCCCTTSCCHHHHHHHHCC---SSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC
T ss_pred HHHHhcCCCccccCCCCCcHHHHHHHhCC---hHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999999999986544 12488899999999998887 8889988766522111 222778
Q ss_pred ccccccCCCCcccccccCCCcCccCCCCc
Q 004887 229 SSLTCKSDDVHAFVAPEKKEYPIDPSLPD 257 (725)
Q Consensus 229 ~~~~~~~G~TpL~~A~e~g~~~vd~~Lpd 257 (725)
++..+..|.|||++|++.++.+++..|.+
T Consensus 203 ~~~~~~~g~t~l~~A~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 203 VDAQNIKGESALDLAKQRKNVWMINHLQE 231 (240)
T ss_dssp TTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred CCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 88999999999999999999999765543
No 32
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.94 E-value=1.9e-27 Score=256.44 Aligned_cols=218 Identities=16% Similarity=0.099 Sum_probs=172.0
Q ss_pred ccCCccCCCCCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhh------------
Q 004887 2 VAVPAVTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKL------------ 61 (725)
Q Consensus 2 ~Adpdv~d~~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l------------ 61 (725)
.+|+|..|..|.||||+| +++|+++|++++.. +|+||||+|+..++.+++....+.
T Consensus 43 g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~ 118 (364)
T 3ljn_A 43 GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLW----HGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLL 118 (364)
T ss_dssp TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCB----TTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccc----CCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHH
Confidence 479999999999999999 88999999976653 679999999999999884332221
Q ss_pred -------------------hhcccCCCCCCCCCCCc--cchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHH
Q 004887 62 -------------------SSKALAPSASPPSKPSL--QRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLIL 120 (725)
Q Consensus 62 -------------------~~~lL~~aa~~~~~~~~--~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LL 120 (725)
..++|+.++. .+ ..+.+.+++..+.+.+..+..|.||||+|+..|+.++|++||
T Consensus 119 ~~~~~~~~~~~~~~~~~~~g~t~L~~A~~-----~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll 193 (364)
T 3ljn_A 119 NECDEREVNEIGSHVKHCKGQTALHWCVG-----LGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMM 193 (364)
T ss_dssp TCCCCCCEEEETTEEEEESCCCHHHHHHH-----SCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred hhcchHhhhhhccccCCCCCCCHHHHHHH-----cCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 1122222221 12 334444444444444445578999999999999999999999
Q ss_pred hcCCCC-----cccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHH
Q 004887 121 SLTKAD-----VNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLL 195 (725)
Q Consensus 121 e~~Gad-----VN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL 195 (725)
++ |++ +|.. +..|+||||+|+..|+ .++|++||++|+|++.+|..|+||||+|+..|+ .+++++|+
T Consensus 194 ~~-g~~~~~~~~~~~-~~~g~t~L~~A~~~g~---~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~----~~~v~~Ll 264 (364)
T 3ljn_A 194 DT-VPSKSSLRLDYA-NKQGNSHLHWAILINW---EDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAM----VLLTKELL 264 (364)
T ss_dssp HH-CSCSSSCCTTCC-CTTCCCTTHHHHTTTC---HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCC----HHHHHHHH
T ss_pred hc-cccccccccccc-CCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCh----HHHHHHHH
Confidence 99 888 9999 9999999999999999 999999999999999999999999999999854 55999999
Q ss_pred HCCCCCCCccc---cccccccccccCCCCCCCCCCCccccccCCCCcccccccCCCcCccCCCC
Q 004887 196 KNGGSVSFDEL---QVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPIDPSLP 256 (725)
Q Consensus 196 ~~Gadvn~~d~---~g~Tp~~~ass~ls~s~~~~~~~~~~~~~G~TpL~~A~e~g~~~vd~~Lp 256 (725)
++|++++..+. .+.++ ..+..+.|||+.|+..++.+++..|.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~l~~aa~~~~~~~v~~ll 309 (364)
T 3ljn_A 265 QKTDVFLIQACPYHNGTTV-------------------LPDRVVWLDFVPAAADPSKQEVLQLL 309 (364)
T ss_dssp HHSCHHHHHTCTTBSSSSB-------------------CGGGCCCCTTSCSSCCHHHHHHHHHH
T ss_pred HcCCchhhhcCcccCcccc-------------------cccccccccchhhhhccCHHHHHHHH
Confidence 99988754332 22222 56788999999999999888765443
No 33
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.94 E-value=3.6e-26 Score=239.62 Aligned_cols=174 Identities=18% Similarity=0.124 Sum_probs=152.9
Q ss_pred ccCCccCCCCCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCC
Q 004887 2 VAVPAVTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPP 73 (725)
Q Consensus 2 ~Adpdv~d~~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~ 73 (725)
.+|+|..|.+|+||||+| +++|+++|++++.+|. .|+||||+|+..++.+++.
T Consensus 82 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~--~g~t~L~~A~~~~~~~~v~----------------- 142 (285)
T 3d9h_A 82 GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA--DWHTPLFNACVSGSWDCVN----------------- 142 (285)
T ss_dssp TCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCT--TCCCHHHHHHHHTCHHHHH-----------------
T ss_pred CCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCC--CCCCHHHHHHHcCHHHHHH-----------------
Confidence 478999999999999999 8899999999999998 9999999999877665532
Q ss_pred CCCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHH
Q 004887 74 SKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDV 153 (725)
Q Consensus 74 ~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~ei 153 (725)
+++..+.+.+ .+..|.||||+|+..|+.+++++|+++ |++++.+ +..|.||||+|+..|+ .++
T Consensus 143 -----------~Ll~~g~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-d~~g~t~L~~A~~~~~---~~~ 205 (285)
T 3d9h_A 143 -----------LLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIAY-GGNIDHK-ISHLGTPLYLACENQQ---RAC 205 (285)
T ss_dssp -----------HHHHTTCCSS-CSCTTSCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-BTTTBCHHHHHHHTTC---HHH
T ss_pred -----------HHHHCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCc-CCCCCCHHHHHHHcCc---HHH
Confidence 2222222222 134599999999999999999999999 9999999 9999999999999999 999
Q ss_pred HHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCccccccccccccc
Q 004887 154 VKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSS 216 (725)
Q Consensus 154 VklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~as 216 (725)
|++|++.|++++. |..|+||||+|+..|+ .+++++|+++|++++.+|..|.||++.+.
T Consensus 206 v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~----~~~v~~Ll~~gad~~~~d~~g~t~l~~A~ 263 (285)
T 3d9h_A 206 VKKLLESGADVNQ-GKGQDSPLHAVVRTAS----EELACLLMDFGADTQAKNAEGKRPVELVP 263 (285)
T ss_dssp HHHHHHTTCCTTC-CBTTBCHHHHHHHTTC----HHHHHHHHHTTCCTTCCCTTSCCGGGGSC
T ss_pred HHHHHHCCCCCCC-CCCCCCHHHHHHHcCC----HHHHHHHHHCCCCCCCcCCCCCCHHHHhc
Confidence 9999999999995 8999999999999854 55999999999999999999999987764
No 34
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.94 E-value=1.8e-27 Score=246.30 Aligned_cols=212 Identities=15% Similarity=0.076 Sum_probs=154.8
Q ss_pred ccCCccCCCCCCcHHHHH--------HHHHH----HCCCCccC----cCCCCCCChHHHHHHHc---CChhhhcCchhhh
Q 004887 2 VAVPAVTMRNKSSPLKIS--------ISIFQ----KHTQNVFL----VDFAINDRTLLILLFFQ---NYLIMCGGSEKLS 62 (725)
Q Consensus 2 ~Adpdv~d~~G~TPLhiA--------vklLL----~~GADVN~----~D~D~~G~TpLHlAa~~---g~~ei~ga~~~l~ 62 (725)
.|..+..|..|+||||+| ++.|+ +.+++++. .|. .|+||||+|+.. ++.+++....+.+
T Consensus 3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~--~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPE--TGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTT--TCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCc--CCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 467888999999999999 44444 57888873 455 999999999975 5444432221111
Q ss_pred hcccCCCCCCCCCCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCC---------
Q 004887 63 SKALAPSASPPSKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGL--------- 133 (725)
Q Consensus 63 ~~lL~~aa~~~~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~--------- 133 (725)
... +.... .........+..|.||||+|+..|+.++|++||++ |+++|.+ +.
T Consensus 81 a~~---------------~~~~~--~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-ga~~~~~-~~~~~~~~~~~ 141 (273)
T 2pnn_A 81 RKT---------------DSLKQ--FVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN-GADVQAA-ANGDFFKKTKG 141 (273)
T ss_dssp HHT---------------TCHHH--HHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-BCSGGGSSCSS
T ss_pred ccc---------------cchhH--HhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcCcc-ccccccccccc
Confidence 100 00000 01222233456899999999999999999999999 9999998 65
Q ss_pred -----CCchHHHHHHhCCCCCHHHHHHHHHH---CCCCCCCcCCCCCcHHHHHHhCCCCCC-----HHHHHHHHHHCCCC
Q 004887 134 -----DKSTALHCAASGGSVNAVDVVKLLLF---AGADSNLTDAHGNRPFDVIVVHPNVPD-----SRVSLEDLLKNGGS 200 (725)
Q Consensus 134 -----~G~TpLH~Aa~~G~~~~~eiVklLL~---~GADin~~D~~G~TPLhlA~~~g~~e~-----~~~ivelLL~~Gad 200 (725)
.|.||||+|+..|+ .++|++||+ .|++++.+|.+|+||||+|+..|+... ..+++++|+++|++
T Consensus 142 ~~~~~~g~tpL~~A~~~g~---~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~ 218 (273)
T 2pnn_A 142 RPGFYFGELPLSLAACTNQ---LAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAK 218 (273)
T ss_dssp SCCCCSCBSHHHHHHHTTC---HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHcCC---HHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhh
Confidence 79999999999999 999999999 999999999999999999998754211 15799999999999
Q ss_pred CCCccccccccccccccCCCCCCCCCCCccccccCCCCcccccccCCCcCccCCCCcc
Q 004887 201 VSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPIDPSLPDI 258 (725)
Q Consensus 201 vn~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~~G~TpL~~A~e~g~~~vd~~Lpdi 258 (725)
++.... .+++++..|.||||+|++.|+.+++..|.+.
T Consensus 219 ~n~~~~---------------------~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 255 (273)
T 2pnn_A 219 LHPTLK---------------------LEEITNRKGLTPLALAASSGKIGVLAYILQR 255 (273)
T ss_dssp HCTTCC---------------------GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred cccccc---------------------cccccCCCCCCHHHHHHHhChHHHHHHHHHC
Confidence 874211 0135788899999999999999998766543
No 35
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.94 E-value=9.7e-27 Score=235.37 Aligned_cols=167 Identities=27% Similarity=0.261 Sum_probs=141.3
Q ss_pred cCCccCCCCCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCC
Q 004887 3 AVPAVTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPS 74 (725)
Q Consensus 3 Adpdv~d~~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~ 74 (725)
+++|..|..|+||||+| +++|+++|++++.+|. .|+||||+|+..++.+++...... ...+.
T Consensus 36 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~-------~~~~~- 105 (236)
T 1ikn_D 36 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDF--RGNTPLHLACEQGCLASVGVLTQS-------CTTPH- 105 (236)
T ss_dssp CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCT--TCCCHHHHHHHHTCHHHHHHHHHS-------TTTTS-
T ss_pred HHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC--CCCCHHHHHHHcCCHHHHHHHHhc-------ccchh-
Confidence 58999999999999999 7899999999999998 999999999988776664322111 11000
Q ss_pred CCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCC-CCchHHHHHHhCCCCCHHHH
Q 004887 75 KPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGL-DKSTALHCAASGGSVNAVDV 153 (725)
Q Consensus 75 ~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~-~G~TpLH~Aa~~G~~~~~ei 153 (725)
.....+..+..|.||||+|+..|+.++|++||++ |+++|.+ +. .|.||||+|+..|+ .++
T Consensus 106 --------------~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~~g~tpL~~A~~~~~---~~~ 166 (236)
T 1ikn_D 106 --------------LHSILKATNYNGHTCLHLASIHGYLGIVELLVSL-GADVNAQ-EPCNGRTALHLAVDLQN---PDL 166 (236)
T ss_dssp --------------SSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH-TCCTTCC-CTTTCCCHHHHHHHTTC---HHH
T ss_pred --------------HHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCC-CCCCCCCHHHHHHHcCC---HHH
Confidence 0001233456799999999999999999999999 9999999 66 99999999999999 999
Q ss_pred HHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCCCCC
Q 004887 154 VKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVS 202 (725)
Q Consensus 154 VklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Gadvn 202 (725)
|++|+++|++++.+|..|+||||+|+..| ..+++++|+++|++..
T Consensus 167 v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~----~~~~~~~Ll~~ga~~~ 211 (236)
T 1ikn_D 167 VSLLLKCGADVNRVTYQGYSPYQLTWGRP----STRIQQQLGQLTLENL 211 (236)
T ss_dssp HHHHHTTTCCSCCCCTTCCCGGGGCTTSS----CHHHHHHHHTTSCGGG
T ss_pred HHHHHHcCCCCCcccCCCCCHHHHHHccC----chHHHHHHHHcchhhh
Confidence 99999999999999999999999999974 4569999999999875
No 36
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.94 E-value=6.1e-26 Score=226.99 Aligned_cols=174 Identities=20% Similarity=0.117 Sum_probs=148.1
Q ss_pred ccCCCCCCcHHHHH--------HHHHHHCC--CCccC-cCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCC
Q 004887 6 AVTMRNKSSPLKIS--------ISIFQKHT--QNVFL-VDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPS 74 (725)
Q Consensus 6 dv~d~~G~TPLhiA--------vklLL~~G--ADVN~-~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~ 74 (725)
+..|.+|.||||+| +++|+++| ++++. .+. .|+||||+|+..++.++... ++....
T Consensus 30 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~--~g~t~L~~A~~~~~~~~~~~-------Ll~~g~---- 96 (228)
T 2dzn_A 30 LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDD--SGWTPFHIACSVGNLEVVKS-------LYDRPL---- 96 (228)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCT--TSCCHHHHHHHHCCHHHHHH-------HHSSSS----
T ss_pred ccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCC--CCCCHHHHHHHcCCHHHHHH-------HHhCCC----
Confidence 34789999999999 88999999 55555 555 99999999998776554322 111110
Q ss_pred CCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHH
Q 004887 75 KPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVV 154 (725)
Q Consensus 75 ~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiV 154 (725)
..+.+..+..|.||||+|+..|+.+++++|+++ |++++.+ +..|.||||+|+..|+ .+++
T Consensus 97 ---------------~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v 156 (228)
T 2dzn_A 97 ---------------KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN-GASVRIK-DKFNQIPLHRAASVGS---LKLI 156 (228)
T ss_dssp ---------------CCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCSCCC-CTTSCCHHHHHHHTTC---HHHH
T ss_pred ---------------CcccccCCcCCCCHHHHHHHcCCHhHHHHHHHc-CCCcccc-CCCCCCHHHHHHHcCC---HHHH
Confidence 133444567899999999999999999999999 9999999 9999999999999999 9999
Q ss_pred HHHHHCC-CCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHH-HCCCCCCCccccccccccccc
Q 004887 155 KLLLFAG-ADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLL-KNGGSVSFDELQVSSVDLRSS 216 (725)
Q Consensus 155 klLL~~G-ADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL-~~Gadvn~~d~~g~Tp~~~as 216 (725)
++|++.| ++++.+|..|+||||+|+..|+ .+++++|+ ++|++++.+|..|.||.+.+.
T Consensus 157 ~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~----~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~ 216 (228)
T 2dzn_A 157 ELLCGLGKSAVNWQDKQGWTPLFHALAEGH----GDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 216 (228)
T ss_dssp HHHHTTTCCCSCCCCTTSCCHHHHHHHTTC----HHHHHHHHHHHCCCSCCBCTTSCBGGGGCS
T ss_pred HHHHhcCcccccCcCCCCCCHHHHHHHcCC----HHHHHHHHHhcCCCCCccCCCCCcHHHHHH
Confidence 9999999 9999999999999999999854 55999999 899999999999999987653
No 37
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.93 E-value=5.4e-27 Score=246.14 Aligned_cols=193 Identities=13% Similarity=-0.003 Sum_probs=158.6
Q ss_pred CCccCCCCCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCC
Q 004887 4 VPAVTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSK 75 (725)
Q Consensus 4 dpdv~d~~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~ 75 (725)
++|..|.+|.||||+| +++|+++|+++|.+| |+||||+|+..++.+
T Consensus 23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~----g~t~L~~A~~~g~~~---------------------- 76 (285)
T 3kea_A 23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE----NEFPLHQAATLEDTK---------------------- 76 (285)
T ss_dssp TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT----TCCHHHHHTTSSSCH----------------------
T ss_pred CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC----CCCHHHHHHHcCCHH----------------------
Confidence 6889999999999999 889999999999885 699999999654433
Q ss_pred CCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCC-chHHHHHHhCCCCCHHHHH
Q 004887 76 PSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDK-STALHCAASGGSVNAVDVV 154 (725)
Q Consensus 76 ~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G-~TpLH~Aa~~G~~~~~eiV 154 (725)
.+.+++..+.+.+..+..|.||||+|+..|+.+++++||++ |++++.+ +..| .||||+|+..|+ .+++
T Consensus 77 ------~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~-~~~g~~t~L~~A~~~~~---~~~v 145 (285)
T 3kea_A 77 ------IVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK-NWRLMFY-GKTGWKTSFYHAVMLND---VSIV 145 (285)
T ss_dssp ------HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGC-SSSGGGSHHHHHHHTTC---HHHH
T ss_pred ------HHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCCcc-CCCCCCCHHHHHHHcCC---HHHH
Confidence 33455566666667778899999999999999999999999 9999998 8888 799999999999 9999
Q ss_pred HHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCccccccccccccccCCCCCCCCCCCcccccc
Q 004887 155 KLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCK 234 (725)
Q Consensus 155 klLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~ 234 (725)
++|++.|+++... ..|.||||+|+..|+ .+++++|+++|++++. ++.
T Consensus 146 ~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~----~~~v~~Ll~~gad~n~----------------------------~~~ 192 (285)
T 3kea_A 146 SYFLSEIPSTFDL-AILLSCIHITIKNGH----VDMMILLLDYMTSTNT----------------------------NNS 192 (285)
T ss_dssp HHHHTTSCTTCCC-STHHHHHHHHHHTTC----HHHHHHHHHHHHHTCT----------------------------TCC
T ss_pred HHHHhCCCccccc-cCCccHHHHHHHcCh----HHHHHHHHHcCCCCCc----------------------------ccC
Confidence 9999999887332 289999999999754 4599999999999885 445
Q ss_pred CCCCc-ccccccCCCcCccCCCCccccccccch
Q 004887 235 SDDVH-AFVAPEKKEYPIDPSLPDIKDSIYASD 266 (725)
Q Consensus 235 ~G~Tp-L~~A~e~g~~~vd~~Lpdi~~~iy~~D 266 (725)
.|.|| ||+|++.++.+++..|.+.+..+...+
T Consensus 193 ~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 193 LLFIPDIKLAIDNKDIEMLQALFKYDINIYSAN 225 (285)
T ss_dssp CBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTT
T ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence 55565 888888888888777766655554443
No 38
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.93 E-value=7.9e-27 Score=237.93 Aligned_cols=197 Identities=15% Similarity=0.029 Sum_probs=158.8
Q ss_pred HHHHHHCCCCccCcCC-CCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccchhHHHHHHhhCCchhhhc
Q 004887 20 ISIFQKHTQNVFLVDF-AINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMIGLWYSFQRLSKKIVL 98 (725)
Q Consensus 20 vklLL~~GADVN~~D~-D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~~~~L~~a~~~g~~~~~~ 98 (725)
++.|++.|++++..+. +.+|.||||+|+..|+.+++ .+++..+.+.+..+.
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v----------------------------~~Ll~~g~~~~~~d~ 52 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVV----------------------------QQAVKEMNDPSQPNE 52 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHH----------------------------HHHHHHSSCTTCCCT
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHH----------------------------HHHHhcCCCCCCCCC
Confidence 4678999999886543 34678899999987665543 244455556666778
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcC-CCCCcHHHH
Q 004887 99 QHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTD-AHGNRPFDV 177 (725)
Q Consensus 99 ~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D-~~G~TPLhl 177 (725)
.|+||||+|+..|+.++|++||+. |+++|.+ |..|+||||+|+..|+ .++|++||+.|++++.+| ..|+||||+
T Consensus 53 ~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~n~~-d~~g~tpLh~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~g~tpL~~ 127 (229)
T 2vge_A 53 EGITALHNAICGANYSIVDFLITA-GANVNSP-DSHGWTPLHCAASCND---TVICMALVQHGAAIFATTLSDGATAFEK 127 (229)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHTTTCCTTCCCSSTTCCTGGG
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCcccccCCCCCCHHHH
Confidence 999999999999999999999999 9999999 9999999999999999 999999999999999997 699999999
Q ss_pred H--HhCCCCCCHHHHHHHHHHCCCCCCCcccccccccccccc--CCCCCCCCCCC--ccccccCCCCcccccccCCCcCc
Q 004887 178 I--VVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSS--SLSSSSDDSSL--SSLTCKSDDVHAFVAPEKKEYPI 251 (725)
Q Consensus 178 A--~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~ass--~ls~s~~~~~~--~~~~~~~G~TpL~~A~e~g~~~v 251 (725)
| +.. +..+++++|+++|++++.+|..+.|+.+.... ......+.+.+ ++.+|..|.||||+|+..|+.++
T Consensus 128 A~a~~~----~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~ 203 (229)
T 2vge_A 128 CDPYRE----GYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGY 203 (229)
T ss_dssp CCTTST----THHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEE
T ss_pred HHHHhc----ChHHHHHHHHHcCCCcccccCCchHHHHHHhhccccccCccccccccccccCCCcccHHHHHHHcCCcce
Confidence 9 775 67779999999999999999999999886555 22233344555 67889999999999999999999
Q ss_pred cC
Q 004887 252 DP 253 (725)
Q Consensus 252 d~ 253 (725)
++
T Consensus 204 v~ 205 (229)
T 2vge_A 204 VP 205 (229)
T ss_dssp EE
T ss_pred ee
Confidence 76
No 39
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.93 E-value=2.5e-27 Score=242.86 Aligned_cols=207 Identities=16% Similarity=0.071 Sum_probs=156.8
Q ss_pred CCCCCCcHHHHH------------HHHHHHCCCCccCcCC--CCCCChHHHHHH---HcCChhhhcCchhhhhcccCCCC
Q 004887 8 TMRNKSSPLKIS------------ISIFQKHTQNVFLVDF--AINDRTLLILLF---FQNYLIMCGGSEKLSSKALAPSA 70 (725)
Q Consensus 8 ~d~~G~TPLhiA------------vklLL~~GADVN~~D~--D~~G~TpLHlAa---~~g~~ei~ga~~~l~~~lL~~aa 70 (725)
.++.|+|+||.| +++|++.|++++..+. |..|+||||+|+ ..|+.+++....+.....
T Consensus 1 ~~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~----- 75 (260)
T 3jxi_A 1 MKVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKT----- 75 (260)
T ss_dssp CCCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHT-----
T ss_pred CccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccc-----
Confidence 367899999999 4556669999998872 137999999999 334444432221111100
Q ss_pred CCCCCCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccC--------------CCCc
Q 004887 71 SPPSKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCG--------------LDKS 136 (725)
Q Consensus 71 ~~~~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d--------------~~G~ 136 (725)
....- .........+..|+||||+|+..|+.++|++||++ |+++|.. + ..|.
T Consensus 76 ----------~~~~~--~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~-~~~~~~~~~~~~~~~~~g~ 141 (260)
T 3jxi_A 76 ----------GNMRE--FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEK-GADVHAQ-ARGRFFQPKDEGGYFYFGE 141 (260)
T ss_dssp ----------TCHHH--HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CEECCCSSSCCCCSCCSCS
T ss_pred ----------cchHh--hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhC-CCCcCcc-ccccccCcccccccccCCC
Confidence 00000 01233334445899999999999999999999999 9999998 6 6899
Q ss_pred hHHHHHHhCCCCCHHHHHHHHHH---CCCCCCCcCCCCCcHHHHHHhCCCC-----CCHHHHHHHHHHCCCCCCCccccc
Q 004887 137 TALHCAASGGSVNAVDVVKLLLF---AGADSNLTDAHGNRPFDVIVVHPNV-----PDSRVSLEDLLKNGGSVSFDELQV 208 (725)
Q Consensus 137 TpLH~Aa~~G~~~~~eiVklLL~---~GADin~~D~~G~TPLhlA~~~g~~-----e~~~~ivelLL~~Gadvn~~d~~g 208 (725)
||||+|+..|+ .++|++||+ .|++++.+|..|+||||+|+..++. +...+++++|+++|++++....
T Consensus 142 tpL~~A~~~g~---~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~-- 216 (260)
T 3jxi_A 142 LPLSLAACTNQ---PHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTN-- 216 (260)
T ss_dssp SHHHHHHHTTC---HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCC--
T ss_pred CHHHHHHHcCC---HHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccc--
Confidence 99999999999 999999999 9999999999999999999976542 1125799999999999853110
Q ss_pred cccccccccCCCCCCCCCCCccccccCCCCcccccccCCCcCccCCCCc
Q 004887 209 SSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPIDPSLPD 257 (725)
Q Consensus 209 ~Tp~~~ass~ls~s~~~~~~~~~~~~~G~TpL~~A~e~g~~~vd~~Lpd 257 (725)
..+.++..|.||||+|++.|+.+++..|.+
T Consensus 217 -------------------~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~ 246 (260)
T 3jxi_A 217 -------------------LEALLNNDGLSPLMMAAKTGKIGIFQHIIR 246 (260)
T ss_dssp -------------------GGGCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred -------------------hhhcccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 113678899999999999999999876654
No 40
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.93 E-value=2.3e-26 Score=240.31 Aligned_cols=163 Identities=25% Similarity=0.233 Sum_probs=136.2
Q ss_pred ccCCccCCCCCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCC
Q 004887 2 VAVPAVTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPP 73 (725)
Q Consensus 2 ~Adpdv~d~~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~ 73 (725)
.||+|..|.+|+||||+| +++|++.|++++.++. +|.||||+|+..++.++
T Consensus 76 Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~--~g~t~l~~a~~~~~~~~------------------- 134 (269)
T 4b93_B 76 GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNA--DQAVPLHLACQQGHFQV------------------- 134 (269)
T ss_dssp CCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCT--TCCCHHHHHHHHTCHHH-------------------
T ss_pred CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCC--CCCCccccccccChHHH-------------------
Confidence 589999999999999999 8999999999999998 99999999997665543
Q ss_pred CCCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHH
Q 004887 74 SKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDV 153 (725)
Q Consensus 74 ~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~ei 153 (725)
+.+++..+.+.+..+..|+||||+|+..|+.++|++||++ |+|||.+ +..|+||||+||..|+ .++
T Consensus 135 ---------~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~-gadvn~~-~~~g~t~Lh~A~~~g~---~~~ 200 (269)
T 4b93_B 135 ---------VKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQH-GASINAS-NNKGNTALHEAVIEKH---VFV 200 (269)
T ss_dssp ---------HHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHT-TCCTTCB-CTTSCBHHHHHHHTTC---HHH
T ss_pred ---------HHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCCCcc-ccCCCcHHHHHHHcCC---HHH
Confidence 2344555666666788999999999999999999999999 9999999 9999999999999999 999
Q ss_pred HHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCCCCC
Q 004887 154 VKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVS 202 (725)
Q Consensus 154 VklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Gadvn 202 (725)
|++||++|||++.+|.+|+||||+|+.+++ ..+++++|...++.++
T Consensus 201 v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~---i~~lL~~l~~~~~~~~ 246 (269)
T 4b93_B 201 VELLLLHGASVQVLNKRQRTAVDCAEQNSK---IMELLQVVPSCVASLD 246 (269)
T ss_dssp HHHHHHTTCCSCCCCTTSCCSGGGSCTTCH---HHHHTTC---------
T ss_pred HHHHHHCCCCCCCcCCCCCCHHHHHHhCCc---HHHHHHHHHHhchhhh
Confidence 999999999999999999999999987632 2345555555555443
No 41
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.93 E-value=5.6e-26 Score=243.21 Aligned_cols=175 Identities=14% Similarity=0.056 Sum_probs=132.0
Q ss_pred ccCCcc-CCCCCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCC
Q 004887 2 VAVPAV-TMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASP 72 (725)
Q Consensus 2 ~Adpdv-~d~~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~ 72 (725)
.+|+|. .|.+|+||||+| +++|+++|+|+|.+|. +|+||||+|+..++..-.
T Consensus 120 g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~--~g~TpLh~A~~~g~~~~~----------------- 180 (327)
T 1sw6_A 120 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN--MGESCLVKAVKSVNNYDS----------------- 180 (327)
T ss_dssp CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCT--TCCCHHHHHHHSSHHHHT-----------------
T ss_pred CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC--CCCCHHHHHHHhcccccH-----------------
Confidence 478999 899999999999 8999999999999998 999999999976551100
Q ss_pred CCCCCccchhHHHHHHhh-CCchhhhcCCChHHHHHHH----cCCHHHHHHHHhcC-------------------CCCcc
Q 004887 73 PSKPSLQRNMIGLWYSFQ-RLSKKIVLQHRTPLMVAAE----YGSVDVVKLILSLT-------------------KADVN 128 (725)
Q Consensus 73 ~~~~~~~~~~~~L~~a~~-~g~~~~~~~G~TPLh~Aa~----~G~~eiVk~LLe~~-------------------GadVN 128 (725)
+.+..++... .+.+..+..|+||||+|+. .|+.+++++||+.. |+++|
T Consensus 181 --------~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~ 252 (327)
T 1sw6_A 181 --------GTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN 252 (327)
T ss_dssp --------TCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------
T ss_pred --------HHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcc
Confidence 1111112211 3455667899999999999 89999999999863 89999
Q ss_pred cccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCccccc
Q 004887 129 LTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQV 208 (725)
Q Consensus 129 ~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Gadvn~~d~~g 208 (725)
.+ +..|.||||+|+. +++|+++ ++|.+|..|+||||+|+..|+ .+++++|+++|++++.
T Consensus 253 ~~-~~~g~t~L~~a~~---------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~----~~~v~~Ll~~Gad~~~----- 311 (327)
T 1sw6_A 253 DK-NGERKDSILENLD---------LKWIIAN--MLNAQDSNGDTCLNIAARLGN----ISIVDALLDYGADPFI----- 311 (327)
T ss_dssp --------CHHHHHCS---------HHHHHHH--TTTCCCTTSCCHHHHHHHHCC----HHHHHHHHHTTCCTTC-----
T ss_pred cc-cccCCChhHHHHH---------HHHHHHh--CCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHcCCCCcc-----
Confidence 99 9999999999974 8889988 689999999999999999854 5599999999999984
Q ss_pred cccccccccCCCCCCCCCCCccccccCCCCcccccccCC
Q 004887 209 SSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKK 247 (725)
Q Consensus 209 ~Tp~~~ass~ls~s~~~~~~~~~~~~~G~TpL~~A~e~g 247 (725)
+|+.|.||||+|+++|
T Consensus 312 -----------------------~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 312 -----------------------ANKSGLRPVDFGAGLE 327 (327)
T ss_dssp -----------------------CCTTSCCGGGGTCC--
T ss_pred -----------------------cCCCCCCHHHHHHhcC
Confidence 5666778888888764
No 42
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.93 E-value=6.4e-26 Score=227.62 Aligned_cols=188 Identities=19% Similarity=0.103 Sum_probs=157.8
Q ss_pred CCCCCcHHHHH--------HHHHHHCCC-CccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCcc
Q 004887 9 MRNKSSPLKIS--------ISIFQKHTQ-NVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQ 79 (725)
Q Consensus 9 d~~G~TPLhiA--------vklLL~~GA-DVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~ 79 (725)
+..+.||||.| ++.|++.+. .++..|. .|+||||+|+..++.+++.
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~--~g~t~L~~A~~~g~~~~v~----------------------- 57 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQ--DSRTALHWACSAGHTEIVE----------------------- 57 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCT--TSCCHHHHHHHHTCHHHHH-----------------------
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCC--CCCCHHHHHHHcCcHHHHH-----------------------
Confidence 45688999999 666666654 5677777 9999999999877655432
Q ss_pred chhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHH
Q 004887 80 RNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLF 159 (725)
Q Consensus 80 ~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~ 159 (725)
+++..+.+.+..+..|.||||+|+..|+.+++++|+++ |++++.+ +..|.||||+|+..|+ .+++++|++
T Consensus 58 -----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~ 127 (231)
T 3aji_A 58 -----FLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK-GAHVNAV-NQNGCTPLHYAASKNR---HEIAVMLLE 127 (231)
T ss_dssp -----HHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHH
T ss_pred -----HHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHH
Confidence 33444445555677899999999999999999999999 9999999 9999999999999999 999999999
Q ss_pred CCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCccccccccccccccCCCCCCCCCCCccccccCCCCc
Q 004887 160 AGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVH 239 (725)
Q Consensus 160 ~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~~G~Tp 239 (725)
.|++++.+|..|.||||+|+..|+ .+++++|+++|++++. ++..|.||
T Consensus 128 ~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g~~~~~----------------------------~~~~g~t~ 175 (231)
T 3aji_A 128 GGANPDAKDHYDATAMHRAAAKGN----LKMVHILLFYKASTNI----------------------------QDTEGNTP 175 (231)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHHTC----HHHHHHHHHTTCCSCC----------------------------CCTTSCCH
T ss_pred cCCCCCCcCCCCCcHHHHHHHcCC----HHHHHHHHhcCCCccc----------------------------cCCCCCCH
Confidence 999999999999999999999754 4599999999999874 56677899
Q ss_pred ccccccCCCcCccCCCCccccccc
Q 004887 240 AFVAPEKKEYPIDPSLPDIKDSIY 263 (725)
Q Consensus 240 L~~A~e~g~~~vd~~Lpdi~~~iy 263 (725)
||+|++.++++++..|.+.+..+.
T Consensus 176 L~~A~~~~~~~~v~~Ll~~ga~~~ 199 (231)
T 3aji_A 176 LHLACDEERVEEAKFLVTQGASIY 199 (231)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred HHHHHHCCCHHHHHHHHHCCCCCC
Confidence 999999999999877765544433
No 43
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.93 E-value=9.5e-26 Score=245.58 Aligned_cols=184 Identities=15% Similarity=0.096 Sum_probs=148.3
Q ss_pred ccCCccCCCCCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCC
Q 004887 2 VAVPAVTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPP 73 (725)
Q Consensus 2 ~Adpdv~d~~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~ 73 (725)
.||+|..|.+|.||||+| +++|+++|++++.+|. .|+||||+|+..++.+++.............
T Consensus 156 ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~----- 228 (373)
T 2fo1_E 156 GADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNK--SERSALHQAAANRDFGMMVYMLNSTKLKGDI----- 228 (373)
T ss_dssp CCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT--TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-----
T ss_pred CCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCC--CCCCHHHHHHHCCCHHHHHHHHhcCccccCh-----
Confidence 579999999999999999 8899999999999998 9999999999999887744332221100000
Q ss_pred CCCCccchhHHHHHHhhCC-----------------chh--------hhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 004887 74 SKPSLQRNMIGLWYSFQRL-----------------SKK--------IVLQHRTPLMVAAEYGSVDVVKLILSLTKADVN 128 (725)
Q Consensus 74 ~~~~~~~~~~~L~~a~~~g-----------------~~~--------~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN 128 (725)
...+..+.++|++++..+ .+. .+..|.||||+|+..|+.++|++||++.|+++|
T Consensus 229 -~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n 307 (373)
T 2fo1_E 229 -EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD 307 (373)
T ss_dssp -SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTT
T ss_pred -hhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCcc
Confidence 112234455555555443 221 234799999999999999999999998569999
Q ss_pred cccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCCCC
Q 004887 129 LTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSV 201 (725)
Q Consensus 129 ~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Gadv 201 (725)
.+ |.+|.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+..|+ .+++++|++++++.
T Consensus 308 ~~-d~~g~TpL~~A~~~g~---~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~----~~iv~~Ll~~~a~~ 372 (373)
T 2fo1_E 308 KQ-DEDGKTPIMLAAQEGR---IEVVMYLIQQGASVEAVDATDHTARQLAQANNH----HNIVDIFDRCRPER 372 (373)
T ss_dssp CC-CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTC----HHHHHHHHTTC---
T ss_pred Cc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCC----HHHHHHHHhcCccc
Confidence 99 9999999999999999 999999999999999999999999999999855 55999999998763
No 44
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.93 E-value=1.6e-25 Score=219.50 Aligned_cols=155 Identities=21% Similarity=0.189 Sum_probs=137.3
Q ss_pred CccCCCCCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCC
Q 004887 5 PAVTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKP 76 (725)
Q Consensus 5 pdv~d~~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~ 76 (725)
+|..|.+|+||||+| +++|+++|++++.+|. .|+||||+|+..++.+++
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~--~g~t~L~~A~~~~~~~~v--------------------- 84 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDI--EGSTALIWAVKNNRLGIA--------------------- 84 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCT--TSCCHHHHHHHTTCHHHH---------------------
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccc--cCccHHHHHHHcCCHHHH---------------------
Confidence 577899999999999 8899999999999998 999999999976655443
Q ss_pred CccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHH
Q 004887 77 SLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKL 156 (725)
Q Consensus 77 ~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVkl 156 (725)
.+++..+.+.+..+..|.||||+|+..|+.+++++|+++ |+++|.+ +..|.||||+|+..|+ .++|++
T Consensus 85 -------~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~ 152 (192)
T 2rfm_A 85 -------EKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEH-GANVNDR-NLEGETPLIVASKYGR---SEIVKK 152 (192)
T ss_dssp -------HHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSSCC-CTTCCCHHHHHHHHTC---HHHHHH
T ss_pred -------HHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHH
Confidence 344455556666678899999999999999999999999 9999999 9999999999999999 999999
Q ss_pred HHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCC
Q 004887 157 LLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNG 198 (725)
Q Consensus 157 LL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~G 198 (725)
|+++|++++.+|..|.||||+|+..| ..+++++|+++|
T Consensus 153 Ll~~ga~~~~~~~~g~t~l~~A~~~~----~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 153 LLELGADISARDLTGLTAEASARIFG----RQEVIKIFTEVR 190 (192)
T ss_dssp HHHTTCCTTCBCTTSCBHHHHHHHTT----CHHHHHHHHHHH
T ss_pred HHHCCCCCCCcCCCCCCHHHHHHHhC----cHHHHHHHHhcc
Confidence 99999999999999999999999984 455999999864
No 45
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.92 E-value=6.2e-26 Score=231.54 Aligned_cols=180 Identities=18% Similarity=0.043 Sum_probs=133.1
Q ss_pred CCCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccch
Q 004887 10 RNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRN 81 (725)
Q Consensus 10 ~~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~ 81 (725)
..|+||||.| ++.|+++|++++... .|.||||+|+..|+.+++..
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~~---~~~t~L~~A~~~g~~~~v~~------------------------ 55 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP---LPLALLLDSSLEGEFDLVQR------------------------ 55 (239)
T ss_dssp -------------------------------------CHHHHHHHHHHTCHHHHHH------------------------
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcccCc---hhhHHHHHHHHcCCHHHHHH------------------------
Confidence 4699999999 789999999999764 89999999998776655322
Q ss_pred hHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCC
Q 004887 82 MIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161 (725)
Q Consensus 82 ~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~G 161 (725)
++..+.+.+..+..|+||||+|+..|+.++|++||++ |+++|.+ |..|+||||+|+..|+ .++|++||++|
T Consensus 56 ----Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~-d~~g~tpL~~A~~~~~---~~~v~~Ll~~g 126 (239)
T 1ycs_B 56 ----IIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAA-DSDGWTPLHCAASCNN---VQVCKFLVESG 126 (239)
T ss_dssp ----HTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHH-TCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTT
T ss_pred ----HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcc-CCCCCCHHHHHHHcCC---HHHHHHHHHcC
Confidence 2222334445567899999999999999999999999 9999999 9999999999999999 99999999999
Q ss_pred CCCCCcCCCCC-cHHHHH--HhCCCCCCHHHHHHHHHHCCCCCCCccccccccccccccCCCCCCCCCCCccccccCCCC
Q 004887 162 ADSNLTDAHGN-RPFDVI--VVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDV 238 (725)
Q Consensus 162 ADin~~D~~G~-TPLhlA--~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~~G~T 238 (725)
+|++.+|..|. ||||+| +..|+.+ ++++|+++|++++..+..+.++ +.+..+.+
T Consensus 127 a~~~~~~~~~~~t~l~~a~~~~~g~~~----~~~~Ll~~~a~~~~~~~~~~~a-------------------l~d~~~~~ 183 (239)
T 1ycs_B 127 AAVFAMTYSDMQTAADKCEEMEEGYTQ----CSQFLYGVQEKMGIMNKGVIYA-------------------LWDYEPQN 183 (239)
T ss_dssp CCTTCCCSSSCCCHHHHCCSSSTTCCC----HHHHHHHHHHHTTTTGGGEEEE-------------------SSCBCCSS
T ss_pred CCcceecCCCCcchHHHHHHhhhccHH----HHHHHHHhhhcccccccceEEE-------------------EeccCCCC
Confidence 99999998887 999999 6666666 9999999999999888777766 67788889
Q ss_pred cccccccCCC
Q 004887 239 HAFVAPEKKE 248 (725)
Q Consensus 239 pL~~A~e~g~ 248 (725)
++++|.++|+
T Consensus 184 ~~eLa~~~G~ 193 (239)
T 1ycs_B 184 DDELPMKEGD 193 (239)
T ss_dssp TTBCCBCSSC
T ss_pred CCcccccCCC
Confidence 9999988886
No 46
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.92 E-value=7.2e-25 Score=215.26 Aligned_cols=160 Identities=21% Similarity=0.130 Sum_probs=138.8
Q ss_pred cCCccCCCCCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCC
Q 004887 3 AVPAVTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPS 74 (725)
Q Consensus 3 Adpdv~d~~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~ 74 (725)
+++|..|.+|.||||+| +++|+++|++++.+|. .|+||||+|+..++.+++.
T Consensus 30 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--~g~t~l~~A~~~~~~~~~~------------------ 89 (201)
T 3hra_A 30 YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNS--ISDSPYLYAGAQGRTEILA------------------ 89 (201)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT--TSCCHHHHHHHTTCHHHHH------------------
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CCCCHHHHHHHcCCHHHHH------------------
Confidence 48899999999999999 8899999999999998 9999999999876665532
Q ss_pred CCCccchhHHHHH-HhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCC-CCcccccCCCCchHHHHHHhCCCCC--H
Q 004887 75 KPSLQRNMIGLWY-SFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTK-ADVNLTCGLDKSTALHCAASGGSVN--A 150 (725)
Q Consensus 75 ~~~~~~~~~~L~~-a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~G-adVN~~~d~~G~TpLH~Aa~~G~~~--~ 150 (725)
+++ ......+..+..|.||||+|+..|+.+++++||++ | +++|.+ +..|.||||+|+..+... .
T Consensus 90 ----------~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~-~~~g~t~L~~A~~~~~~~~~~ 157 (201)
T 3hra_A 90 ----------YMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED-GREDIDFQ-NDFGYTALIEAVGLREGNQLY 157 (201)
T ss_dssp ----------HHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHH-CCCCTTCC-CTTSCCHHHHHHHSSCCSHHH
T ss_pred ----------HHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCcCCC-CCCCCCHHHHHHHhccchhhH
Confidence 222 22334555667899999999999999999999999 6 999999 999999999999887522 2
Q ss_pred HHHHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCC
Q 004887 151 VDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNG 198 (725)
Q Consensus 151 ~eiVklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~G 198 (725)
.+++++|+++|+|++.+|..|+||||+|+..| ..+++++|+++|
T Consensus 158 ~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~----~~~~~~~Ll~~G 201 (201)
T 3hra_A 158 QDIVKLLMENGADQSIKDNSGRTAMDYANQKG----YTEISKILAQYN 201 (201)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT----CHHHHHHHHTCC
T ss_pred HHHHHHHHHCCCCCCccCCCCCCHHHHHHHcC----CHhHHHHHHhcC
Confidence 79999999999999999999999999999974 455999999887
No 47
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.92 E-value=1.3e-25 Score=219.04 Aligned_cols=154 Identities=29% Similarity=0.251 Sum_probs=134.5
Q ss_pred hHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHH
Q 004887 41 TLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLIL 120 (725)
Q Consensus 41 TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LL 120 (725)
+.|+.||+.|+.+++ .+++..+.+++..+.+|+||||+|+..++.+++++||
T Consensus 6 ~~L~~Aa~~G~~~~v----------------------------~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll 57 (169)
T 4gpm_A 6 KRLIEAAENGNKDRV----------------------------KDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLI 57 (169)
T ss_dssp HHHHHHHHTTCHHHH----------------------------HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHH----------------------------HHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 478899976655543 3555666677778889999999999999999999999
Q ss_pred hcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCCC
Q 004887 121 SLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGS 200 (725)
Q Consensus 121 e~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Gad 200 (725)
+. |+|++.+ +.+|+||||+|+..|+ .++|++||++|+|+|.+|.+|+||||+|+..|+ .+++++|+++|++
T Consensus 58 ~~-gad~~~~-d~~g~TpLh~A~~~g~---~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~----~~~v~~Ll~~gad 128 (169)
T 4gpm_A 58 SK-GADVNAK-DSDGRTPLHHAAENGH---KEVVKLLISKGADVNAKDSDGRTPLHHAAENGH----KEVVKLLISKGAD 128 (169)
T ss_dssp HT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHHTTCC
T ss_pred hc-ccchhhh-ccCCCCHHHHHHHcCC---HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHcCCC
Confidence 99 9999999 9999999999999999 999999999999999999999999999999855 4599999999999
Q ss_pred CCCccccccccccccccCCCCCCCCCCCccccccCCCCcccccccCCCcCccCCCCccc
Q 004887 201 VSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPIDPSLPDIK 259 (725)
Q Consensus 201 vn~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~~G~TpL~~A~e~g~~~vd~~Lpdi~ 259 (725)
++. ++..|.||||+|++.|+.+++..|.+.+
T Consensus 129 ~~~----------------------------~d~~G~TpL~~A~~~g~~~iv~~Ll~~G 159 (169)
T 4gpm_A 129 VNT----------------------------SDSDGRTPLDLAREHGNEEVVKLLEKQG 159 (169)
T ss_dssp TTC----------------------------CCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred ccc----------------------------cCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 984 5667789999999999999987666543
No 48
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.92 E-value=3.2e-25 Score=213.36 Aligned_cols=161 Identities=20% Similarity=0.177 Sum_probs=136.4
Q ss_pred CCcHHHHH--------HHHHHHCCCC-ccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccchh
Q 004887 12 KSSPLKIS--------ISIFQKHTQN-VFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNM 82 (725)
Q Consensus 12 G~TPLhiA--------vklLL~~GAD-VN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~~ 82 (725)
+.||||.| ++.|++.|.+ ++.+|. .|+||||+|+..++.+++
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~--~g~t~L~~A~~~~~~~~v--------------------------- 52 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDE--RGFTPLIWASAFGEIETV--------------------------- 52 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCT--TSCCHHHHHHHTTCHHHH---------------------------
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCC--CCCCHHHHHHHcCCHHHH---------------------------
Confidence 57999999 7889999887 888887 999999999977665443
Q ss_pred HHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCC
Q 004887 83 IGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGA 162 (725)
Q Consensus 83 ~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GA 162 (725)
.+++..+.+.+..+..|.||||+|+..|+.+++++|+++ |+++|.+ +..|.||||+|+..|+ .++|++|+++|+
T Consensus 53 -~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga 126 (172)
T 3v30_A 53 -RFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLER-DVDINIY-DWNGGTPLLYAVRGNH---VKCVEALLARGA 126 (172)
T ss_dssp -HHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTC
T ss_pred -HHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCC
Confidence 344555666666778899999999999999999999999 9999999 9999999999999999 999999999999
Q ss_pred CCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCcccccccc
Q 004887 163 DSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSV 211 (725)
Q Consensus 163 Din~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp 211 (725)
+++.+|..|+||||+|+..| ..+++++|+++|+++..++..+.||
T Consensus 127 ~~~~~~~~g~t~l~~A~~~~----~~~~~~~L~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 127 DLTTEADSGYTPMDLAVALG----YRKVQQVIENHILKLFQSNLVPADP 171 (172)
T ss_dssp CTTCCCTTSCCHHHHHHHHT----CHHHHHHHHHHHHHHSCC-------
T ss_pred CccccCCCCCCHHHHHHHhC----cHHHHHHHHHHHHHHhcccCCCCCC
Confidence 99999999999999999974 5569999999999999888888776
No 49
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.92 E-value=1.9e-25 Score=238.12 Aligned_cols=238 Identities=18% Similarity=0.100 Sum_probs=181.0
Q ss_pred ccCCccCCC-CCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCC
Q 004887 2 VAVPAVTMR-NKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASP 72 (725)
Q Consensus 2 ~Adpdv~d~-~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~ 72 (725)
.||||..+. .|+||||+| +++|+++|++++.++. .+.++++.++..+............... .
T Consensus 48 Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--- 119 (337)
T 4g8k_A 48 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK--NGATPFILAAIAGSVKLLKLFLSKGADV---N--- 119 (337)
T ss_dssp TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--TCCCHHHHHHHHTCHHHHHHHHTTTCCT---T---
T ss_pred CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhcc--CCCchhHHHHhcccchhhHHhhhccchh---h---
Confidence 589999876 499999999 9999999999999988 8888888888877766532221111110 0
Q ss_pred CCCCCccchhHHHHHHhhCCchhh------------------------hcCCChHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 004887 73 PSKPSLQRNMIGLWYSFQRLSKKI------------------------VLQHRTPLMVAAEYGSVDVVKLILSLTKADVN 128 (725)
Q Consensus 73 ~~~~~~~~~~~~L~~a~~~g~~~~------------------------~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN 128 (725)
..+..+.+++++++..+...+ +..|.||||+|+..|+.++|++||++.|+++|
T Consensus 120 ---~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n 196 (337)
T 4g8k_A 120 ---ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN 196 (337)
T ss_dssp ---CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTT
T ss_pred ---hhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcC
Confidence 012234445555544443332 24689999999999999999999976599999
Q ss_pred cccCCCCchHHHHHHhCCCC-CHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHC-CCCCCCccc
Q 004887 129 LTCGLDKSTALHCAASGGSV-NAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKN-GGSVSFDEL 206 (725)
Q Consensus 129 ~~~d~~G~TpLH~Aa~~G~~-~~~eiVklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~-Gadvn~~d~ 206 (725)
.+ +..|.|+||+++..+.. ...+++++|+++|+|+|.+|..|+||||+|+..|+ .+++++|+.. |++++.+|.
T Consensus 197 ~~-d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~----~~~v~~Ll~~~~~~vn~~d~ 271 (337)
T 4g8k_A 197 AC-DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH----LGLVQRLLEQEHIEINDTDS 271 (337)
T ss_dssp CC-CTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTC----HHHHHHHHTSTTCCTTCBCT
T ss_pred cc-CCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhh----hHHHHHHHHhcCCcccCcCC
Confidence 99 99999999988765542 23568999999999999999999999999999754 4599999975 899999999
Q ss_pred cccccccccccCCCCC-----CCCCCCccccccCCCCcccccccCCCcCccCCCCcccc
Q 004887 207 QVSSVDLRSSSSLSSS-----SDDSSLSSLTCKSDDVHAFVAPEKKEYPIDPSLPDIKD 260 (725)
Q Consensus 207 ~g~Tp~~~ass~ls~s-----~~~~~~~~~~~~~G~TpL~~A~e~g~~~vd~~Lpdi~~ 260 (725)
.|.||++.+....... .+.+.+++ ..+|||+|+++++.+|+..|.+.+.
T Consensus 272 ~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n-----~~~~L~~A~~~~~~~iv~~Ll~~GA 325 (337)
T 4g8k_A 272 DGKTALLLAVELKLKKIAELLCKRGASTD-----CGDLVMTARRNYDHSLVKVLLSHGA 325 (337)
T ss_dssp TSCBHHHHHHHTTCHHHHHHHHTTSCSST-----TCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCC-----CCCHHHHHHHcCCHHHHHHHHHCcC
Confidence 9999999876622222 23355554 4579999999999999887765443
No 50
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.92 E-value=4.9e-25 Score=221.63 Aligned_cols=176 Identities=17% Similarity=0.192 Sum_probs=140.2
Q ss_pred ccCCccCCCCCCcHHHHH--------HHHHHHCCCCc-----cCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCC
Q 004887 2 VAVPAVTMRNKSSPLKIS--------ISIFQKHTQNV-----FLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAP 68 (725)
Q Consensus 2 ~Adpdv~d~~G~TPLhiA--------vklLL~~GADV-----N~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~ 68 (725)
.+|++..|.+|+||||+| +++|+++|+++ +.+|. .|+||||+|+..++.+++....+ .
T Consensus 27 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~-------~ 97 (232)
T 2rfa_A 27 GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELY--EGQTALHIAVINQNVNLVRALLA-------R 97 (232)
T ss_dssp CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTT--TTCCHHHHHHHTTCHHHHHHHHH-------T
T ss_pred CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCC--CCcCHHHHHHHcCCHHHHHHHHh-------C
Confidence 578999999999999999 88999999997 66666 99999999998888776433222 1
Q ss_pred CCCCCCCCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCC
Q 004887 69 SASPPSKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSV 148 (725)
Q Consensus 69 aa~~~~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~ 148 (725)
.+.......... ........+..|.||||+|+..|+.+++++||++ |+|+|.+ |..|+||||+|+..|+
T Consensus 98 g~~~~~~~~~~~--------~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~-d~~g~t~L~~A~~~~~- 166 (232)
T 2rfa_A 98 GASVSARATGSV--------FHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEH-GADIRAQ-DSLGNTVLHILILQPN- 166 (232)
T ss_dssp TCCTTCCCCSGG--------GSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHTCSC-
T ss_pred CCCCCcccCCcc--------eeecccccccCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHHcCC-
Confidence 221111100000 0112233456899999999999999999999999 9999999 9999999999999999
Q ss_pred CHHHHH----HHHHHCCCCC------CCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCCCCCC
Q 004887 149 NAVDVV----KLLLFAGADS------NLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSF 203 (725)
Q Consensus 149 ~~~eiV----klLL~~GADi------n~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Gadvn~ 203 (725)
.+++ ++|+++|+++ +.+|..|+||||+|+..|+ .+++++|+++|++...
T Consensus 167 --~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~----~~~v~~Ll~~g~~~~~ 225 (232)
T 2rfa_A 167 --KTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN----IVMFQHLMQKRKHIAA 225 (232)
T ss_dssp --HHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTC----HHHHHHHHHHHHHC--
T ss_pred --hHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCC----HHHHHHHHhcCccchh
Confidence 8877 9999999998 5899999999999999854 5599999999977654
No 51
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.92 E-value=2.2e-24 Score=215.24 Aligned_cols=162 Identities=20% Similarity=0.104 Sum_probs=144.3
Q ss_pred ccCCccCCCCCCcHHHHH--------HHHHHHCCC-CccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCC
Q 004887 2 VAVPAVTMRNKSSPLKIS--------ISIFQKHTQ-NVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASP 72 (725)
Q Consensus 2 ~Adpdv~d~~G~TPLhiA--------vklLL~~GA-DVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~ 72 (725)
.+|++..|..|.||||+| +++|+++++ +++..+. .|+||||+|+..++.+++
T Consensus 48 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~--~g~t~L~~A~~~~~~~~~----------------- 108 (223)
T 2f8y_A 48 SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH--DGTTPLILAARLAVEGML----------------- 108 (223)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCT--TCCCHHHHHHHHTCHHHH-----------------
T ss_pred CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCC--CCCcHHHHHHHhCcHHHH-----------------
Confidence 578999999999999999 889999987 8999988 999999999977655443
Q ss_pred CCCCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHH
Q 004887 73 PSKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVD 152 (725)
Q Consensus 73 ~~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~e 152 (725)
.+++..+.+.+..+..|.||||+|+..|+.+++++|+++ |+++|.+ +..|.||||+|+..|+ .+
T Consensus 109 -----------~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~ 172 (223)
T 2f8y_A 109 -----------EDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQ-NNREETPLFLAAREGS---YE 172 (223)
T ss_dssp -----------HHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHHTC---HH
T ss_pred -----------HHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCc-CCCCcCHHHHHHHcCC---HH
Confidence 344444555666677899999999999999999999999 9999999 9999999999999999 99
Q ss_pred HHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCCCCC
Q 004887 153 VVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVS 202 (725)
Q Consensus 153 iVklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Gadvn 202 (725)
+|++|+++|++++.+|..|.||||+|+..+ ..+++++|+++|+...
T Consensus 173 ~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~----~~~i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 173 TAKVLLDHFANRDITDHMDRLPRDIAQERM----HHDIVRLLDEYNLVRS 218 (223)
T ss_dssp HHHHHHHTTCCTTCCCTTCCCHHHHHHHTT----CHHHHHHHHHTTCSSC
T ss_pred HHHHHHHcCCCCccccccCCCHHHHHHHhc----chHHHHHHHHcCCCcc
Confidence 999999999999999999999999999984 4559999999998754
No 52
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.92 E-value=4.3e-26 Score=237.86 Aligned_cols=187 Identities=14% Similarity=0.062 Sum_probs=150.1
Q ss_pred CCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHH
Q 004887 38 NDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVK 117 (725)
Q Consensus 38 ~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk 117 (725)
.|.|+||+||..|+.+++. +++..+.+.+..+..|.||||+|+..|+.++|+
T Consensus 39 ~~~t~l~~A~~~g~~~~v~----------------------------~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~ 90 (299)
T 1s70_B 39 DDGAVFLAACSSGDTEEVL----------------------------RLLERGADINYANVDGLTALHQACIDDNVDMVK 90 (299)
T ss_dssp CHHHHHHHHHHHTCHHHHH----------------------------HHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHH
T ss_pred CCccHHHHHHHcCCHHHHH----------------------------HHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHH
Confidence 7899999999887766542 344445556666788999999999999999999
Q ss_pred HHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHH-
Q 004887 118 LILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLK- 196 (725)
Q Consensus 118 ~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~- 196 (725)
+||++ |+++|.. +..|.||||+|+..|+ .++|++|+++|++++..|..|.||||+|+.. +..++++.|+.
T Consensus 91 ~Ll~~-ga~~~~~-~~~g~tpL~~A~~~g~---~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~----~~~~~~~~ll~~ 161 (299)
T 1s70_B 91 FLVEN-GANINQP-DNEGWIPLHAAASCGY---LDIAEYLISQGAHVGAVNSEGDTPLDIAEEE----AMEELLQNEVNR 161 (299)
T ss_dssp HHHHT-TCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHCCSH----HHHHHHHHHHHH
T ss_pred HHHHC-CCCCCCC-CCCCCcHHHHHHHcCC---HHHHHHHHhCCCCCCCcCCCCCCHHHHHHhc----chHHHHHHHHhh
Confidence 99999 9999999 9999999999999999 9999999999999999999999999999875 44556665543
Q ss_pred CCCC--------------------------CCCcccccccccccccc-CCCC----CCCCCCCccccccCCCCccccccc
Q 004887 197 NGGS--------------------------VSFDELQVSSVDLRSSS-SLSS----SSDDSSLSSLTCKSDDVHAFVAPE 245 (725)
Q Consensus 197 ~Gad--------------------------vn~~d~~g~Tp~~~ass-~ls~----s~~~~~~~~~~~~~G~TpL~~A~e 245 (725)
.|++ ....+..|.||++.+.. +... ..+.+.+++..+..|.||||+|++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~ 241 (299)
T 1s70_B 162 QGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAH 241 (299)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHH
T ss_pred cCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHh
Confidence 2333 33456789999987765 2211 133477888999999999999999
Q ss_pred CCCcCccCCCCccccc
Q 004887 246 KKEYPIDPSLPDIKDS 261 (725)
Q Consensus 246 ~g~~~vd~~Lpdi~~~ 261 (725)
.|+.+++..|.+.+..
T Consensus 242 ~~~~~~v~~Ll~~gad 257 (299)
T 1s70_B 242 WGKEEACRILVENLCD 257 (299)
T ss_dssp TTCHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHcCCC
Confidence 9999998766654433
No 53
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.91 E-value=1.9e-24 Score=205.28 Aligned_cols=151 Identities=19% Similarity=0.156 Sum_probs=130.7
Q ss_pred CCCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccch
Q 004887 10 RNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRN 81 (725)
Q Consensus 10 ~~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~ 81 (725)
....||||+| +++|+++|++++.+|. .|+||||+|+. ++.+
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~--~g~t~L~~A~~-~~~~---------------------------- 51 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNG--FGRTALQVMKL-GNPE---------------------------- 51 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCT--TSCCHHHHCCS-SCHH----------------------------
T ss_pred chHhhHHHHHHHcCCHHHHHHHHhCCCCccccCc--cCccHHHHHHc-CcHH----------------------------
Confidence 3567999999 8899999999999998 99999999884 4433
Q ss_pred hHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCC
Q 004887 82 MIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG 161 (725)
Q Consensus 82 ~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~G 161 (725)
.+.+++..+.+.+..+..|.||||+|+..|+.+++++|+++ |+++|.+ +.+|.||||+|+..|+ .+++++|+++|
T Consensus 52 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g 126 (162)
T 1ihb_A 52 IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEF-QADVNIE-DNEGNLPLHLAAKEGH---LRVVEFLVKHT 126 (162)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHHS
T ss_pred HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcc
Confidence 33345555556666678899999999999999999999999 9999999 9999999999999999 99999999999
Q ss_pred CC-CCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCCC
Q 004887 162 AD-SNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGS 200 (725)
Q Consensus 162 AD-in~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Gad 200 (725)
++ ++.+|..|.||||+|+..|+ .+++++|+++|||
T Consensus 127 ~~~~~~~~~~g~t~l~~A~~~~~----~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 127 ASNVGHRNHKGDTACDLARLYGR----NEVVSLMQANGAG 162 (162)
T ss_dssp CCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHHTC--
T ss_pred CCCCCCcCCCCCcHHHHHHHcCC----HHHHHHHHHhCCC
Confidence 98 69999999999999999854 5599999999986
No 54
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.91 E-value=5e-25 Score=216.05 Aligned_cols=161 Identities=17% Similarity=0.079 Sum_probs=139.5
Q ss_pred CccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccchhHHHHHHhhCCchhhhcCCChHHHHHH
Q 004887 29 NVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAA 108 (725)
Q Consensus 29 DVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa 108 (725)
.+|.+|. .|+||||+|+..++.+++ .+++..+.+.+..+..|.||||+|+
T Consensus 27 ~~n~~d~--~g~t~L~~A~~~g~~~~v----------------------------~~Ll~~~~~~~~~~~~g~t~L~~A~ 76 (192)
T 2rfm_A 27 LRNYRDS--YNRTPLMVACMLGMENAI----------------------------DKLVENFDKLEDKDIEGSTALIWAV 76 (192)
T ss_dssp HHTCCCT--TCCCHHHHHHHHTCGGGH----------------------------HHHHHHHCCTTCCCTTSCCHHHHHH
T ss_pred HHhCcCC--CCCCHHHHHHHcCCHHHH----------------------------HHHHHhccccccccccCccHHHHHH
Confidence 4677887 999999999977655443 2444455556666778999999999
Q ss_pred HcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHH
Q 004887 109 EYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSR 188 (725)
Q Consensus 109 ~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~ 188 (725)
..|+.+++++|+++ |++++.. +..|.||||+|+..|+ .+++++|++.|++++.+|..|.||||+|+..|+ .
T Consensus 77 ~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~ 147 (192)
T 2rfm_A 77 KNNRLGIAEKLLSK-GSNVNTK-DFSGKTPLMWSIIFGY---SEMSYFLLEHGANVNDRNLEGETPLIVASKYGR----S 147 (192)
T ss_dssp HTTCHHHHHHHHHH-TCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTC----H
T ss_pred HcCCHHHHHHHHHC-CCCCCCC-CCCCCcHHHHHHHcCC---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC----H
Confidence 99999999999999 9999999 9999999999999999 999999999999999999999999999999754 4
Q ss_pred HHHHHHHHCCCCCCCccccccccccccccCCCCCCCCCCCccccccCCCCcccccccCCCcCccCCCC
Q 004887 189 VSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPIDPSLP 256 (725)
Q Consensus 189 ~ivelLL~~Gadvn~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~~G~TpL~~A~e~g~~~vd~~Lp 256 (725)
+++++|+++|++++. ++..|.|||++|+..++.+++..|.
T Consensus 148 ~~v~~Ll~~ga~~~~----------------------------~~~~g~t~l~~A~~~~~~~~v~~Ll 187 (192)
T 2rfm_A 148 EIVKKLLELGADISA----------------------------RDLTGLTAEASARIFGRQEVIKIFT 187 (192)
T ss_dssp HHHHHHHHTTCCTTC----------------------------BCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCCCCCC----------------------------cCCCCCCHHHHHHHhCcHHHHHHHH
Confidence 599999999999974 5667778899999999998876544
No 55
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.91 E-value=4.8e-24 Score=205.30 Aligned_cols=151 Identities=28% Similarity=0.312 Sum_probs=131.7
Q ss_pred CCCCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccc
Q 004887 9 MRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQR 80 (725)
Q Consensus 9 d~~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~ 80 (725)
...+.|+||.| +++|+++|+++|.+|. .|+||||+|+..++.+++
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~--~g~t~L~~A~~~~~~~~v------------------------- 63 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDA--SGWTPLHLAAFNGHLEIV------------------------- 63 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT--TSCCHHHHHHHTTCHHHH-------------------------
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCC--CCCCHHHHHHHcCCHHHH-------------------------
Confidence 34578999999 8899999999999998 999999999977665443
Q ss_pred hhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHC
Q 004887 81 NMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFA 160 (725)
Q Consensus 81 ~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~ 160 (725)
.+++..+.+.+..+..|.||||+|+..|+.+++++|+++ |+++|.+ +..|.||||+|+..|+ .++|++|+++
T Consensus 64 ---~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ 135 (169)
T 2y1l_E 64 ---EVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN-GADVNAN-DMEGHTPLHLAAMFGH---LEIVEVLLKN 135 (169)
T ss_dssp ---HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHT
T ss_pred ---HHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHc
Confidence 244444555556677899999999999999999999999 9999999 9999999999999999 9999999999
Q ss_pred CCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCC
Q 004887 161 GADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNG 198 (725)
Q Consensus 161 GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~G 198 (725)
|++++.+|..|.||||+|+..|+ .+++++|++.|
T Consensus 136 g~~~~~~~~~g~t~l~~A~~~~~----~~~~~~L~~~G 169 (169)
T 2y1l_E 136 GADVNAQDKFGKTAFDISIDNGN----EDLAEILQKLN 169 (169)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHTC-
T ss_pred CCCCCCcCCCCCCHHHHHHHhCC----HHHHHHHHHcC
Confidence 99999999999999999999854 55999999876
No 56
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.91 E-value=1.8e-24 Score=207.01 Aligned_cols=153 Identities=20% Similarity=0.181 Sum_probs=134.9
Q ss_pred CCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccchh
Q 004887 11 NKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNM 82 (725)
Q Consensus 11 ~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~~ 82 (725)
.|.||||+| ++.|++.|++++.+|. .|+||||+|+..++.+++
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~--~g~t~L~~A~~~~~~~~v--------------------------- 52 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDE--EGFTPLMWAAAHGQIAVV--------------------------- 52 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCT--TSCCHHHHHHHTTCHHHH---------------------------
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCC--CCCCHHHHHHHCCCHHHH---------------------------
Confidence 589999999 8899999999999998 999999999977665443
Q ss_pred HHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCC
Q 004887 83 IGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGA 162 (725)
Q Consensus 83 ~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GA 162 (725)
.+++..+.+.+..+..|.||||+|+..|+.+++++|+++ |+++|.+ +..|.||||+|+..|+ .+++++|+++|+
T Consensus 53 -~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~ 126 (167)
T 3v31_A 53 -EFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDC-GVDVNEY-DWNGGTPLLYAVHGNH---VKCVKMLLESGA 126 (167)
T ss_dssp -HHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTC
T ss_pred -HHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCcC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCC
Confidence 244444555555677899999999999999999999999 9999999 9999999999999999 999999999999
Q ss_pred CCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCCCCC
Q 004887 163 DSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVS 202 (725)
Q Consensus 163 Din~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Gadvn 202 (725)
+++.+|..|.||||+|+..| ..+++++|+++++++.
T Consensus 127 ~~~~~~~~g~t~l~~A~~~~----~~~~~~~L~~~~~~~~ 162 (167)
T 3v31_A 127 DPTIETDSGYNSMDLAVALG----YRSVQQVIESHLLKLL 162 (167)
T ss_dssp CTTCCCTTSCCHHHHHHHHT----CHHHHHHHHHHHHHHC
T ss_pred CCCCcCCCCCCHHHHHHHcC----cHHHHHHHHHHHHHHH
Confidence 99999999999999999974 4559999998876553
No 57
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.91 E-value=9.2e-25 Score=223.55 Aligned_cols=176 Identities=16% Similarity=0.062 Sum_probs=136.0
Q ss_pred ccCCcc----CCCCCCcHHHHH-----------HHHHHHCCCCccCcC---------CCCCCChHHHHHHHcCChhhhcC
Q 004887 2 VAVPAV----TMRNKSSPLKIS-----------ISIFQKHTQNVFLVD---------FAINDRTLLILLFFQNYLIMCGG 57 (725)
Q Consensus 2 ~Adpdv----~d~~G~TPLhiA-----------vklLL~~GADVN~~D---------~D~~G~TpLHlAa~~g~~ei~ga 57 (725)
.+|++. .|.+|+||||+| +++|+++|++++..+ .|..|+||||+|+..++.+++..
T Consensus 29 g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~ 108 (256)
T 2etb_A 29 SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKL 108 (256)
T ss_dssp TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHH
T ss_pred CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHH
Confidence 367887 899999999999 679999999887433 23489999999998877666432
Q ss_pred chhhhhcccCCCCCCCCCCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHh---cCCCCcccccCCC
Q 004887 58 SEKLSSKALAPSASPPSKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILS---LTKADVNLTCGLD 134 (725)
Q Consensus 58 ~~~l~~~lL~~aa~~~~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe---~~GadVN~~~d~~ 134 (725)
..+ .++..+..... ... ..+....+..|.||||+|+..|+.++|++||+ . |+++|.+ |.+
T Consensus 109 Ll~-------~ga~~~~~~~~--~~~------~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~-ga~~n~~-d~~ 171 (256)
T 2etb_A 109 LVE-------NGADVHLRACG--RFF------QKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ-PASLEAT-DSL 171 (256)
T ss_dssp HHH-------TTCCTTCCCCS--GGG------SCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC-CCCTTCC-CTT
T ss_pred HHH-------cCCCCCccccc--ccc------cccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc-CCCcCcc-CCC
Confidence 211 11111110000 000 01111222349999999999999999999999 7 9999999 999
Q ss_pred CchHHHHHHh--CCCCCHHH-------HHHHHHHCCCCC-------CCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCC
Q 004887 135 KSTALHCAAS--GGSVNAVD-------VVKLLLFAGADS-------NLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNG 198 (725)
Q Consensus 135 G~TpLH~Aa~--~G~~~~~e-------iVklLL~~GADi-------n~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~G 198 (725)
|+||||+|+. .++ .+ +|++|+++|+++ +.+|..|+||||+|+..|+ .+++++|+++|
T Consensus 172 g~TpLh~A~~~~~~~---~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~----~~~v~~Ll~~g 244 (256)
T 2etb_A 172 GNTVLHALVMIADNS---PENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGK----IEIFRHILQRE 244 (256)
T ss_dssp SCCHHHHHHHHCCSC---HHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTC----HHHHHHHHHHH
T ss_pred CCCHHHHHHHcccCC---chhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCC----HHHHHHHHhCC
Confidence 9999999999 777 77 999999999999 9999999999999999854 55999999998
Q ss_pred CCC
Q 004887 199 GSV 201 (725)
Q Consensus 199 adv 201 (725)
++.
T Consensus 245 ~~~ 247 (256)
T 2etb_A 245 FSG 247 (256)
T ss_dssp HHH
T ss_pred CCC
Confidence 665
No 58
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.91 E-value=2.5e-24 Score=224.98 Aligned_cols=160 Identities=25% Similarity=0.275 Sum_probs=139.3
Q ss_pred CccCCCCCCcHHHHH--------HHHHHHCCC-CccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCC
Q 004887 5 PAVTMRNKSSPLKIS--------ISIFQKHTQ-NVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSK 75 (725)
Q Consensus 5 pdv~d~~G~TPLhiA--------vklLL~~GA-DVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~ 75 (725)
+|..|.+|+||||+| +++|+++|+ +++..|. .|+||||+|+.... .
T Consensus 104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~--~g~tpL~~a~~~~~-----------------------~ 158 (276)
T 4hbd_A 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNR--AGYSPIMLTALATL-----------------------K 158 (276)
T ss_dssp HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCT--TSCCHHHHGGGCCC-----------------------C
T ss_pred CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCC--CCCCHHHHHHHHHh-----------------------h
Confidence 789999999999999 889999998 9999998 99999999983210 0
Q ss_pred CCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHH
Q 004887 76 PSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVK 155 (725)
Q Consensus 76 ~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVk 155 (725)
..+....+.+++..+......+..|.||||+|+..|+.++|++||++ |+|+|.+ |.+|+||||+|+..|+ .++|+
T Consensus 159 ~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~-gad~n~~-d~~G~TpLh~A~~~g~---~~iv~ 233 (276)
T 4hbd_A 159 TQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLAC-EADVNVQ-DDDGSTALMCACEHGH---KEIAG 233 (276)
T ss_dssp SHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHHTC---HHHHH
T ss_pred hhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCC-CCCCCCHHHHHHHCCC---HHHHH
Confidence 12234455566666666666677899999999999999999999999 9999999 9999999999999999 99999
Q ss_pred HHHH-CCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCC
Q 004887 156 LLLF-AGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNG 198 (725)
Q Consensus 156 lLL~-~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~G 198 (725)
+||+ .|+|++.+|..|+||||+|+..|+ .+++++|++++
T Consensus 234 ~Ll~~~gad~~~~d~~g~TpL~~A~~~g~----~~iv~~Ll~~~ 273 (276)
T 4hbd_A 234 LLLAVPSCDISLTDRDGSTALMVALDAGQ----SEIASMLYSRM 273 (276)
T ss_dssp HHHTSTTCCTTCCCTTSCCHHHHHHHHTC----HHHHHHHHHHC
T ss_pred HHHhcCCCCCcCcCCCCCCHHHHHHHcCC----HHHHHHHHhcc
Confidence 9999 899999999999999999999854 55999999864
No 59
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.90 E-value=9.8e-24 Score=211.19 Aligned_cols=178 Identities=20% Similarity=0.145 Sum_probs=143.4
Q ss_pred ccCCccCCCCCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCC
Q 004887 2 VAVPAVTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPP 73 (725)
Q Consensus 2 ~Adpdv~d~~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~ 73 (725)
.+|++..|..|.||||+| +++|+++|++++..+ +..|.||||+|+..++.+++.
T Consensus 32 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~~~~t~L~~A~~~~~~~~v~----------------- 93 (240)
T 3eu9_A 32 GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG-GDLNSTPLHWATRQGHLSMVV----------------- 93 (240)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCB-TTTTBCHHHHHHHHTCHHHHH-----------------
T ss_pred CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhc-CCcCCChhHHHHHcCCHHHHH-----------------
Confidence 478999999999999999 889999999999877 346999999999876655432
Q ss_pred CCCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHH
Q 004887 74 SKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDV 153 (725)
Q Consensus 74 ~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~ei 153 (725)
+++..+.+.+..+..|.||||+|+..|+.+++++|+++ |++++.. +..|.||||+|+..++. .++
T Consensus 94 -----------~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~-~~~g~t~l~~a~~~~~~--~~~ 158 (240)
T 3eu9_A 94 -----------QLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK-GQDVDMM-DQNGMTPLMWAAYRTHS--VDP 158 (240)
T ss_dssp -----------HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHHCCS--STT
T ss_pred -----------HHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc-CCCcccc-CCCCCcHHHHHHHhCCh--HHH
Confidence 33334444455566788888888888888888888888 8888888 88888888888855441 678
Q ss_pred HHHHHHCCCCCCCcCC-CCCcHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCccccccccccccc
Q 004887 154 VKLLLFAGADSNLTDA-HGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSS 216 (725)
Q Consensus 154 VklLL~~GADin~~D~-~G~TPLhlA~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~as 216 (725)
+++|++.|++++..+. .|.||||+|+..|+ .+++++|+++|++++.+|..|.||.+.+.
T Consensus 159 ~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 218 (240)
T 3eu9_A 159 TRLLLTFNVSVNLGDKYHKNTALHWAVLAGN----TTVISLLLEAGANVDAQNIKGESALDLAK 218 (240)
T ss_dssp HHHHHHTTCCTTCCCTTTCCCHHHHHHHHTC----HHHHHHHHHHTCCTTCBCTTSCBHHHHHH
T ss_pred HHHHHhcCCCcchhhccCCCcHHHHHHHcCC----HHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence 8888888888888887 88888888888744 45888888888888888888888876653
No 60
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.90 E-value=7.9e-24 Score=205.45 Aligned_cols=159 Identities=18% Similarity=0.136 Sum_probs=137.0
Q ss_pred CCCCcHHHHH--------HHHHHHC-CCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccc
Q 004887 10 RNKSSPLKIS--------ISIFQKH-TQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQR 80 (725)
Q Consensus 10 ~~G~TPLhiA--------vklLL~~-GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~ 80 (725)
.++.|+||.| ++.|++. +.+++.+|. .|+||||+|+..++.+++
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~--~g~t~L~~A~~~~~~~~v------------------------- 55 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDD--HGFSPLHWACREGRSAVV------------------------- 55 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCT--TSCCHHHHHHHTTCHHHH-------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCC--CCCCHHHHHHHcCcHHHH-------------------------
Confidence 4678999999 7788887 788999998 999999999977655443
Q ss_pred hhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHC
Q 004887 81 NMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFA 160 (725)
Q Consensus 81 ~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~ 160 (725)
.+++..+.+.+..+..|.||||+|+..|+.+++++||++ |+++|.+ +..|.||||+|+..|+ .++|++|+++
T Consensus 56 ---~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-d~~g~t~L~~A~~~~~---~~~v~~Ll~~ 127 (179)
T 3f6q_A 56 ---EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY-KADINAV-NEHGNVPLHYACFWGQ---DQVAEDLVAN 127 (179)
T ss_dssp ---HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHT
T ss_pred ---HHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcc-CCCCCCHHHHHHHcCC---HHHHHHHHHC
Confidence 344455556666678899999999999999999999999 9999999 9999999999999999 9999999999
Q ss_pred CCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCcccc
Q 004887 161 GADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQ 207 (725)
Q Consensus 161 GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Gadvn~~d~~ 207 (725)
|++++.+|..|.||||+|+.. +..+++++|+++|++++..+..
T Consensus 128 ga~~~~~~~~g~tpl~~A~~~----~~~~~~~~L~~~g~~~~~~~~~ 170 (179)
T 3f6q_A 128 GALVSICNKYGEMPVDKAKAP----LRELLRERAEKMGQNLNRIPYK 170 (179)
T ss_dssp TCCSSBCCTTSCCGGGGSCHH----HHHHHHHHHHHTTCCCSCBCCC
T ss_pred CCCcchhccCCCCcHHHHHHH----HHHHHHHHHHHhhcCcccCCcc
Confidence 999999999999999999885 6778999999999999875543
No 61
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.90 E-value=3.4e-24 Score=224.80 Aligned_cols=162 Identities=16% Similarity=0.082 Sum_probs=141.1
Q ss_pred ccCCccCCCCCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCC
Q 004887 2 VAVPAVTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPP 73 (725)
Q Consensus 2 ~Adpdv~d~~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~ 73 (725)
.+|++.. +|+||||+| +++|+++|++++.+|. .|+||||+|+..++.++
T Consensus 54 g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~--~g~t~L~~A~~~g~~~~------------------- 110 (285)
T 3kea_A 54 GALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDD--KGNTALYYAVDSGNMQT------------------- 110 (285)
T ss_dssp TGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCT--TSCCHHHHHHHTTCHHH-------------------
T ss_pred CCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC--CCCcHHHHHHHcCCHHH-------------------
Confidence 3666766 599999999 8999999999999998 99999999997765544
Q ss_pred CCCCccchhHHHHHHhhCCchhhhcCC-ChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHH
Q 004887 74 SKPSLQRNMIGLWYSFQRLSKKIVLQH-RTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVD 152 (725)
Q Consensus 74 ~~~~~~~~~~~L~~a~~~g~~~~~~~G-~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~e 152 (725)
+.+++..+.+.+..+..| .||||+|+..|+.+++++|+++ |+++... ..|.||||+|+..|+ .+
T Consensus 111 ---------v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~--~~g~t~L~~A~~~g~---~~ 175 (285)
T 3kea_A 111 ---------VKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE-IPSTFDL--AILLSCIHITIKNGH---VD 175 (285)
T ss_dssp ---------HHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTT-SCTTCCC--STHHHHHHHHHHTTC---HH
T ss_pred ---------HHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCccccc--cCCccHHHHHHHcCh---HH
Confidence 335555566667777788 7999999999999999999999 8887432 389999999999999 99
Q ss_pred HHHHHHHCCCCCCCcCCCCCcH-HHHHHhCCCCCCHHHHHHHHHHCCCCCCCcc
Q 004887 153 VVKLLLFAGADSNLTDAHGNRP-FDVIVVHPNVPDSRVSLEDLLKNGGSVSFDE 205 (725)
Q Consensus 153 iVklLL~~GADin~~D~~G~TP-LhlA~~~g~~e~~~~ivelLL~~Gadvn~~d 205 (725)
+|++|+++|+|++.+|..|+|| ||+|+..|+ .+++++|+++|++++.+|
T Consensus 176 ~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~----~~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 176 MMILLLDYMTSTNTNNSLLFIPDIKLAIDNKD----IEMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTC----HHHHHHHTTSCBCSTTTT
T ss_pred HHHHHHHcCCCCCcccCCCCChHHHHHHHcCC----HHHHHHHHHcCCCCCCCC
Confidence 9999999999999999999998 999999744 569999999999999765
No 62
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.90 E-value=2.6e-24 Score=222.58 Aligned_cols=184 Identities=15% Similarity=0.118 Sum_probs=129.5
Q ss_pred cCCCCCCcHHHHH-----------HHHHHHCCCC-------ccC--cCCCCCCChHHHHHHHcCChhhhcCchhhhhccc
Q 004887 7 VTMRNKSSPLKIS-----------ISIFQKHTQN-------VFL--VDFAINDRTLLILLFFQNYLIMCGGSEKLSSKAL 66 (725)
Q Consensus 7 v~d~~G~TPLhiA-----------vklLL~~GAD-------VN~--~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL 66 (725)
..|..|+||||+| +++|+++|++ +|. .+.|..|+||||+|+..++.+++....
T Consensus 49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll------- 121 (273)
T 2pnn_A 49 KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLV------- 121 (273)
T ss_dssp SCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHH-------
T ss_pred ccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHH-------
Confidence 3588999999999 6799999876 333 222348999999999887766643221
Q ss_pred CCCCCCCCCCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHh---cCCCCcccccCCCCchHHHHHH
Q 004887 67 APSASPPSKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILS---LTKADVNLTCGLDKSTALHCAA 143 (725)
Q Consensus 67 ~~aa~~~~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe---~~GadVN~~~d~~G~TpLH~Aa 143 (725)
..++......... +.........+..|.||||+|+..|+.++|++||+ . |+++|.+ |.+|+||||+|+
T Consensus 122 ~~ga~~~~~~~~~-------~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~-gad~~~~-d~~g~tpLh~A~ 192 (273)
T 2pnn_A 122 ENGADVQAAANGD-------FFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQ-PADISAR-DSVGNTVLHALV 192 (273)
T ss_dssp HTTCCTTCCBCSG-------GGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSC-CCCTTCC-CTTSCCHHHHHH
T ss_pred HCCCCcCcccccc-------ccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccC-CCCceee-CCCCCcHHHHHH
Confidence 1122111111000 00000111223479999999999999999999999 7 9999999 999999999999
Q ss_pred hCCCCCH------HHHHHHHHHCCCCCC-------CcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCC-CCCCcccccc
Q 004887 144 SGGSVNA------VDVVKLLLFAGADSN-------LTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGG-SVSFDELQVS 209 (725)
Q Consensus 144 ~~G~~~~------~eiVklLL~~GADin-------~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Ga-dvn~~d~~g~ 209 (725)
..|+... .++|++|+++|++++ .+|..|+||||+|+..|+ .+++++|+++|+ |.......+.
T Consensus 193 ~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~----~~iv~~Ll~~ga~dp~~~~~~~~ 268 (273)
T 2pnn_A 193 EVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK----IGVLAYILQREIHEPECRHAAAH 268 (273)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC----HHHHHHHHHHHTC----------
T ss_pred HccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhCh----HHHHHHHHHCCCCCchhhhhhhh
Confidence 9886322 589999999999997 489999999999999855 559999999999 7765444444
Q ss_pred c
Q 004887 210 S 210 (725)
Q Consensus 210 T 210 (725)
+
T Consensus 269 ~ 269 (273)
T 2pnn_A 269 H 269 (273)
T ss_dssp -
T ss_pred h
Confidence 3
No 63
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.90 E-value=4.1e-25 Score=230.90 Aligned_cols=178 Identities=22% Similarity=0.170 Sum_probs=148.0
Q ss_pred CCcHHHHH--------HHHHHHCCCC--ccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccch
Q 004887 12 KSSPLKIS--------ISIFQKHTQN--VFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRN 81 (725)
Q Consensus 12 G~TPLhiA--------vklLL~~GAD--VN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~ 81 (725)
+++++|.| ++.|++.+.+ +|.+|. +|+||||+|+..|+.+++
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~--~g~T~Lh~A~~~g~~~~v-------------------------- 127 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADS--NGNTALHYSVSHANFPVV-------------------------- 127 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCT--TSCCHHHHHHHTTCHHHH--------------------------
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCC--CCCCHHHHHHHCCCHHHH--------------------------
Confidence 35566665 4555555555 888988 999999999977665543
Q ss_pred hHHHHHHhhC-CchhhhcCCChHHHHHH-----HcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHH
Q 004887 82 MIGLWYSFQR-LSKKIVLQHRTPLMVAA-----EYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVK 155 (725)
Q Consensus 82 ~~~L~~a~~~-g~~~~~~~G~TPLh~Aa-----~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVk 155 (725)
.+++..+. +.+..+..|.||||+|+ ..++.+++++|++. |++++.. +..|+||||+|+..|+ .++|+
T Consensus 128 --~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~tpLh~A~~~g~---~~~v~ 200 (276)
T 4hbd_A 128 --QQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRL-GNINAKA-SQAGQTALMLAVSHGR---VDVVK 200 (276)
T ss_dssp --HHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHH-SCTTCCC-TTTCCCHHHHHHHTTC---HHHHH
T ss_pred --HHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHc-CCCcccc-CCCCCCHHHHHHHcCC---HHHHH
Confidence 24444444 55666788999999999 66889999999999 9999888 8999999999999999 99999
Q ss_pred HHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHH-CCCCCCCccccccccccccccCCCCCCCCCCCcccccc
Q 004887 156 LLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLK-NGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCK 234 (725)
Q Consensus 156 lLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~-~Gadvn~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~ 234 (725)
+||++|+|+|.+|.+|+||||+|+..|+ .+++++|++ .|++++. +|.
T Consensus 201 ~Ll~~gad~n~~d~~G~TpLh~A~~~g~----~~iv~~Ll~~~gad~~~----------------------------~d~ 248 (276)
T 4hbd_A 201 ALLACEADVNVQDDDGSTALMCACEHGH----KEIAGLLLAVPSCDISL----------------------------TDR 248 (276)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHHTC----HHHHHHHHTSTTCCTTC----------------------------CCT
T ss_pred HHHhCCCCCCCCCCCCCCHHHHHHHCCC----HHHHHHHHhcCCCCCcC----------------------------cCC
Confidence 9999999999999999999999999854 559999999 8999874 567
Q ss_pred CCCCcccccccCCCcCccCCCC
Q 004887 235 SDDVHAFVAPEKKEYPIDPSLP 256 (725)
Q Consensus 235 ~G~TpL~~A~e~g~~~vd~~Lp 256 (725)
.|.||||+|++.|+.+++..|.
T Consensus 249 ~g~TpL~~A~~~g~~~iv~~Ll 270 (276)
T 4hbd_A 249 DGSTALMVALDAGQSEIASMLY 270 (276)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHH
Confidence 7788999999999999876554
No 64
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.89 E-value=1.6e-23 Score=199.97 Aligned_cols=152 Identities=23% Similarity=0.210 Sum_probs=96.6
Q ss_pred CCCCCCcHHHHH--------HHHHHH-CCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCc
Q 004887 8 TMRNKSSPLKIS--------ISIFQK-HTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSL 78 (725)
Q Consensus 8 ~d~~G~TPLhiA--------vklLL~-~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~ 78 (725)
.|.+|.||||.| ++.|++ .+.+++..+. .|+||||+|+..++.+++
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~--~g~t~L~~A~~~~~~~~v----------------------- 58 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEG--RQSTPLHFAAGYNRVSVV----------------------- 58 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTT--TCCCHHHHHHHTTCHHHH-----------------------
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccccc--CCCCHHHHHHHcChHHHH-----------------------
Confidence 355667777777 555555 3455555555 677777777755443332
Q ss_pred cchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHH
Q 004887 79 QRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLL 158 (725)
Q Consensus 79 ~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL 158 (725)
.+++..+.+.+..+..|.||||+|+..|+.+++++|+++ |+++|.+ +..|.||||+|+..|+ .+++++|+
T Consensus 59 -----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll 128 (165)
T 3twr_A 59 -----EYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH-GAVVNVA-DLWKFTPLHEAAAKGK---YEICKLLL 128 (165)
T ss_dssp -----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHH
T ss_pred -----HHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhC-CCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHH
Confidence 233333444444556677777777777777777777777 7777776 6777777777777777 77777777
Q ss_pred HCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCC
Q 004887 159 FAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGG 199 (725)
Q Consensus 159 ~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Ga 199 (725)
++|++++.+|..|+||||+|+. +..+++++|+++|+
T Consensus 129 ~~ga~~~~~~~~g~t~l~~a~~-----~~~~i~~~L~~~gA 164 (165)
T 3twr_A 129 QHGADPTKKNRDGNTPLDLVKD-----GDTDIQDLLRGDAA 164 (165)
T ss_dssp HTTCCTTCCCTTSCCTGGGSCT-----TCHHHHHHHHTC--
T ss_pred HcCCCCcccCCCCCChhHhHhc-----CChHHHHHHhhccc
Confidence 7777777777777777777654 23357777776664
No 65
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.89 E-value=1.2e-23 Score=215.46 Aligned_cols=164 Identities=15% Similarity=0.087 Sum_probs=131.2
Q ss_pred cCCccCC----CCCCcHHHHH-----------HHHHHHCCCC-----------ccCcCCCCCCChHHHHHHHcCChhhhc
Q 004887 3 AVPAVTM----RNKSSPLKIS-----------ISIFQKHTQN-----------VFLVDFAINDRTLLILLFFQNYLIMCG 56 (725)
Q Consensus 3 Adpdv~d----~~G~TPLhiA-----------vklLL~~GAD-----------VN~~D~D~~G~TpLHlAa~~g~~ei~g 56 (725)
++++..+ .+|.||||+| +++|+++|++ ++..|. .|+||||+|+..|+.+++.
T Consensus 33 ~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~--~g~t~L~~A~~~g~~~~v~ 110 (260)
T 3jxi_A 33 KRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYY--RGQTALHIAIERRCKHYVE 110 (260)
T ss_dssp CCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSE--ESBCHHHHHHHTTCHHHHH
T ss_pred CCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccccc--CCCCHHHHHHHcCCHHHHH
Confidence 4555444 7799999988 6899998854 344444 8999999999887766543
Q ss_pred CchhhhhcccCCCCCCCCCCCccchhHHHHHHhhCCchhhh--------------cCCChHHHHHHHcCCHHHHHHHHh-
Q 004887 57 GSEKLSSKALAPSASPPSKPSLQRNMIGLWYSFQRLSKKIV--------------LQHRTPLMVAAEYGSVDVVKLILS- 121 (725)
Q Consensus 57 a~~~l~~~lL~~aa~~~~~~~~~~~~~~L~~a~~~g~~~~~--------------~~G~TPLh~Aa~~G~~eiVk~LLe- 121 (725)
+++..+.+.+..+ ..|.||||+|+..|+.++|++||+
T Consensus 111 ----------------------------~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~ 162 (260)
T 3jxi_A 111 ----------------------------LLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTEN 162 (260)
T ss_dssp ----------------------------HHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred ----------------------------HHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 2222222333322 579999999999999999999999
Q ss_pred --cCCCCcccccCCCCchHHHHHHhCCCCCH------HHHHHHHHHCCCCC-------CCcCCCCCcHHHHHHhCCCCCC
Q 004887 122 --LTKADVNLTCGLDKSTALHCAASGGSVNA------VDVVKLLLFAGADS-------NLTDAHGNRPFDVIVVHPNVPD 186 (725)
Q Consensus 122 --~~GadVN~~~d~~G~TpLH~Aa~~G~~~~------~eiVklLL~~GADi-------n~~D~~G~TPLhlA~~~g~~e~ 186 (725)
. |+++|.+ |..|+||||+|+..|+... .+++++|+++|+++ +.+|..|+||||+|+..|+
T Consensus 163 ~~~-ga~~~~~-d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~--- 237 (260)
T 3jxi_A 163 GHK-QADLRRQ-DSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK--- 237 (260)
T ss_dssp SSC-CCCTTCC-CTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC---
T ss_pred ccc-CCCCccc-CCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCC---
Confidence 7 9999999 9999999999998776222 48999999999999 7899999999999999855
Q ss_pred HHHHHHHHHHCCCCCC
Q 004887 187 SRVSLEDLLKNGGSVS 202 (725)
Q Consensus 187 ~~~ivelLL~~Gadvn 202 (725)
.+++++||++|++..
T Consensus 238 -~~~v~~Ll~~g~~~~ 252 (260)
T 3jxi_A 238 -IGIFQHIIRREIADA 252 (260)
T ss_dssp -HHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhCCCcc
Confidence 459999999987653
No 66
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.89 E-value=8.3e-24 Score=202.40 Aligned_cols=155 Identities=25% Similarity=0.242 Sum_probs=134.4
Q ss_pred CCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHH
Q 004887 38 NDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVK 117 (725)
Q Consensus 38 ~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk 117 (725)
.|.||||+|+..|+.+++ ..++..+...+..+..|.||||+|+..|+.++++
T Consensus 2 ~~~t~L~~A~~~g~~~~v----------------------------~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~ 53 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYL----------------------------ATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVE 53 (167)
T ss_dssp TTCCCHHHHHHTTCHHHH----------------------------HHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred CCcchHHHHHHCCCHHHH----------------------------HHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHH
Confidence 689999999987665543 2344445556666788999999999999999999
Q ss_pred HHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHC
Q 004887 118 LILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKN 197 (725)
Q Consensus 118 ~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~ 197 (725)
+|+++ |++++.. +..|.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+..|+ .+++++|+++
T Consensus 54 ~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~ 124 (167)
T 3v31_A 54 FLLQN-GADPQLL-GKGRESALSLACSKGY---TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNH----VKCVKMLLES 124 (167)
T ss_dssp HHHHT-TCCTTCC-CTTCCCHHHHHHHHTC---HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHHT
T ss_pred HHHHc-CCCCCCc-CCCCCcHHHHHHHcCC---HHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCC----HHHHHHHHHc
Confidence 99999 9999999 9999999999999999 999999999999999999999999999999854 5599999999
Q ss_pred CCCCCCccccccccccccccCCCCCCCCCCCccccccCCCCcccccccCCCcCccCCCCc
Q 004887 198 GGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPIDPSLPD 257 (725)
Q Consensus 198 Gadvn~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~~G~TpL~~A~e~g~~~vd~~Lpd 257 (725)
|++++. .+..|.|||++|++.|+.+++..|.+
T Consensus 125 g~~~~~----------------------------~~~~g~t~l~~A~~~~~~~~~~~L~~ 156 (167)
T 3v31_A 125 GADPTI----------------------------ETDSGYNSMDLAVALGYRSVQQVIES 156 (167)
T ss_dssp TCCTTC----------------------------CCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCCC----------------------------cCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 999874 56677788999999999998765543
No 67
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.89 E-value=4.6e-23 Score=194.89 Aligned_cols=143 Identities=25% Similarity=0.237 Sum_probs=121.6
Q ss_pred CCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccchhH
Q 004887 12 KSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMI 83 (725)
Q Consensus 12 G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~~~ 83 (725)
..||||.| +++|+++|++++ .+. .|+||||+|+..++.++..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~--~g~t~L~~A~~~~~~~~v~--------------------------- 51 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDW--LGTSPLHLAAQYGHFSTTE--------------------------- 51 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCT--TCCCHHHHHHHHTCHHHHH---------------------------
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCC--CCCCHHHHHHHcCCHHHHH---------------------------
Confidence 46899999 889999999987 355 8999999999876655432
Q ss_pred HHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCC
Q 004887 84 GLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGAD 163 (725)
Q Consensus 84 ~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAD 163 (725)
+++..+.+.+..+..|.||||+|+..|+.+++++|+++ |+++|.+ +..|.||||+|+..|+ .+++++|+++|++
T Consensus 52 -~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~ 125 (153)
T 1awc_B 52 -VLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKH-GADVNAK-DMLKMTALHWATEHNH---QEVVELLIKYGAD 125 (153)
T ss_dssp -HHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCC
T ss_pred -HHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCC
Confidence 22333334455567899999999999999999999999 9999999 9999999999999999 9999999999999
Q ss_pred CCCcCCCCCcHHHHHHhCCCCCCHHHHHHHH
Q 004887 164 SNLTDAHGNRPFDVIVVHPNVPDSRVSLEDL 194 (725)
Q Consensus 164 in~~D~~G~TPLhlA~~~g~~e~~~~ivelL 194 (725)
++.+|..|.||||+|+..|+. +++++|
T Consensus 126 ~~~~~~~g~t~l~~A~~~~~~----~i~~~L 152 (153)
T 1awc_B 126 VHTQSKFCKTAFDISIDNGNE----DLAEIL 152 (153)
T ss_dssp TTCCCTTSCCHHHHHHHTTCH----HHHHHH
T ss_pred ccccCCCCCCHHHHHHHcCCH----HHHHHh
Confidence 999999999999999998554 488876
No 68
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.89 E-value=1.3e-23 Score=200.58 Aligned_cols=153 Identities=22% Similarity=0.186 Sum_probs=127.9
Q ss_pred CCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHH
Q 004887 38 NDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVK 117 (725)
Q Consensus 38 ~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk 117 (725)
+|.|+||.|+..|+.+++...... ........+..|.||||+|+..|+.++++
T Consensus 7 ~~~~~l~~A~~~g~~~~v~~ll~~---------------------------~~~~~~~~~~~g~t~L~~A~~~~~~~~v~ 59 (165)
T 3twr_A 7 EADRQLLEAAKAGDVETVKKLCTV---------------------------QSVNCRDIEGRQSTPLHFAAGYNRVSVVE 59 (165)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHCCT---------------------------TTTTCCCTTTTCCCHHHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHc---------------------------CCCCccccccCCCCHHHHHHHcChHHHHH
Confidence 789999999988877764332111 01123334567899999999999999999
Q ss_pred HHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHC
Q 004887 118 LILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKN 197 (725)
Q Consensus 118 ~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~ 197 (725)
+|+++ |+++|.+ +..|+||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+..|+ .+++++|+++
T Consensus 60 ~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~ 130 (165)
T 3twr_A 60 YLLQH-GADVHAK-DKGGLVPLHNACSYGH---YEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK----YEICKLLLQH 130 (165)
T ss_dssp HHHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC----HHHHHHHHHT
T ss_pred HHHhc-CCCCCcc-CCCCCCHHHHHHHcCc---HHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCC----HHHHHHHHHc
Confidence 99999 9999999 9999999999999999 999999999999999999999999999999854 5599999999
Q ss_pred CCCCCCccccccccccccccCCCCCCCCCCCccccccCCCCcccccccCCCcCccCCC
Q 004887 198 GGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPIDPSL 255 (725)
Q Consensus 198 Gadvn~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~~G~TpL~~A~e~g~~~vd~~L 255 (725)
|++++. ++..|.||||+|.+ ++.+|+..|
T Consensus 131 ga~~~~----------------------------~~~~g~t~l~~a~~-~~~~i~~~L 159 (165)
T 3twr_A 131 GADPTK----------------------------KNRDGNTPLDLVKD-GDTDIQDLL 159 (165)
T ss_dssp TCCTTC----------------------------CCTTSCCTGGGSCT-TCHHHHHHH
T ss_pred CCCCcc----------------------------cCCCCCChhHhHhc-CChHHHHHH
Confidence 999974 56667788999876 777776544
No 69
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.89 E-value=1.6e-23 Score=201.64 Aligned_cols=154 Identities=24% Similarity=0.208 Sum_probs=133.3
Q ss_pred CCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHH
Q 004887 38 NDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVK 117 (725)
Q Consensus 38 ~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk 117 (725)
.+.|+||.|+..|+.+++ .+++..+.+.+..+..|.||||+|+..|+.++++
T Consensus 13 ~~~~~l~~A~~~g~~~~v----------------------------~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 64 (169)
T 2y1l_E 13 DLGKKLLEAARAGRDDEV----------------------------RILMANGADVNAEDASGWTPLHLAAFNGHLEIVE 64 (169)
T ss_dssp CHHHHHHHHHHHTCHHHH----------------------------HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred cccchHHHHHHcCCHHHH----------------------------HHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 678999999987666553 2444445555666778999999999999999999
Q ss_pred HHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHC
Q 004887 118 LILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKN 197 (725)
Q Consensus 118 ~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~ 197 (725)
+||++ |++++.. +..|.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+..|+ .+++++|+++
T Consensus 65 ~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~ 135 (169)
T 2y1l_E 65 VLLKN-GADVNAV-DHAGMTPLRLAALFGH---LEIVEVLLKNGADVNANDMEGHTPLHLAAMFGH----LEIVEVLLKN 135 (169)
T ss_dssp HHHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHHT
T ss_pred HHHHc-CCCCCcc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHc
Confidence 99999 9999999 9999999999999999 999999999999999999999999999999854 5599999999
Q ss_pred CCCCCCccccccccccccccCCCCCCCCCCCccccccCCCCcccccccCCCcCccCCCC
Q 004887 198 GGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPIDPSLP 256 (725)
Q Consensus 198 Gadvn~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~~G~TpL~~A~e~g~~~vd~~Lp 256 (725)
|++++. ++..|.|||++|++.++.+++..|.
T Consensus 136 g~~~~~----------------------------~~~~g~t~l~~A~~~~~~~~~~~L~ 166 (169)
T 2y1l_E 136 GADVNA----------------------------QDKFGKTAFDISIDNGNEDLAEILQ 166 (169)
T ss_dssp TCCTTC----------------------------CCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCC----------------------------cCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 999874 5667778899999999988875443
No 70
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.89 E-value=1.8e-23 Score=197.67 Aligned_cols=149 Identities=20% Similarity=0.155 Sum_probs=127.1
Q ss_pred CChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHH
Q 004887 39 DRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKL 118 (725)
Q Consensus 39 G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~ 118 (725)
..|+||.|+..|+.+++. +++..+.... .+..|.||||+|+..|+.+++++
T Consensus 2 ~~~~L~~A~~~g~~~~v~----------------------------~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~ 52 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVR----------------------------ILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEV 52 (153)
T ss_dssp HHHHHHHHHHHTCHHHHH----------------------------HHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHH
T ss_pred ccHHHHHHHHcCCHHHHH----------------------------HHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHH
Confidence 468999999877666543 2222222222 35679999999999999999999
Q ss_pred HHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCC
Q 004887 119 ILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNG 198 (725)
Q Consensus 119 LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~G 198 (725)
|++. |++++.+ +..|.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+..|+ .+++++|+++|
T Consensus 53 Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g 123 (153)
T 1awc_B 53 LLRA-GVSRDAR-TKVDRTPLHMAASEGH---ANIVEVLLKHGADVNAKDMLKMTALHWATEHNH----QEVVELLIKYG 123 (153)
T ss_dssp HHTT-TCCTTCC-CTTCCCHHHHHHHHTC---HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHHTT
T ss_pred HHHc-CCCCCCC-CCCCCCHHHHHHHcCh---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHcC
Confidence 9999 9999999 9999999999999999 999999999999999999999999999999854 55999999999
Q ss_pred CCCCCccccccccccccccCCCCCCCCCCCccccccCCCCcccccccCCCcCccC
Q 004887 199 GSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPIDP 253 (725)
Q Consensus 199 advn~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~~G~TpL~~A~e~g~~~vd~ 253 (725)
++++. ++..|.|||++|++.|+.+++.
T Consensus 124 a~~~~----------------------------~~~~g~t~l~~A~~~~~~~i~~ 150 (153)
T 1awc_B 124 ADVHT----------------------------QSKFCKTAFDISIDNGNEDLAE 150 (153)
T ss_dssp CCTTC----------------------------CCTTSCCHHHHHHHTTCHHHHH
T ss_pred CCccc----------------------------cCCCCCCHHHHHHHcCCHHHHH
Confidence 99874 5667778899999999988754
No 71
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.88 E-value=8.1e-24 Score=203.48 Aligned_cols=155 Identities=23% Similarity=0.243 Sum_probs=130.1
Q ss_pred CChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccchhHHHHHHhhCC-chhhhcCCChHHHHHHHcCCHHHHH
Q 004887 39 DRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMIGLWYSFQRL-SKKIVLQHRTPLMVAAEYGSVDVVK 117 (725)
Q Consensus 39 G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~~~~L~~a~~~g-~~~~~~~G~TPLh~Aa~~G~~eiVk 117 (725)
+.||||+|+..|+.+++... +..+.. .+..+..|.||||+|+..|+.++|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~l----------------------------l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~ 53 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEH----------------------------LRKGDNLVNKPDERGFTPLIWASAFGEIETVR 53 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHH----------------------------HTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred chhhHHHHHHcCCHHHHHHH----------------------------HHcCcccccCCCCCCCCHHHHHHHcCCHHHHH
Confidence 47899999987776654322 111111 3344578999999999999999999
Q ss_pred HHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHC
Q 004887 118 LILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKN 197 (725)
Q Consensus 118 ~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~ 197 (725)
+||++ |+++|.. +..|.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+..|+ .+++++|+++
T Consensus 54 ~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~ 124 (172)
T 3v30_A 54 FLLEW-GADPHIL-AKERESALSLASTGGY---TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNH----VKCVEALLAR 124 (172)
T ss_dssp HHHHH-TCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHHT
T ss_pred HHHHc-CCCchhh-cccCCCHHHHHHHCCC---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHc
Confidence 99999 9999999 9999999999999999 999999999999999999999999999999854 5599999999
Q ss_pred CCCCCCccccccccccccccCCCCCCCCCCCccccccCCCCcccccccCCCcCccCCCCcc
Q 004887 198 GGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPIDPSLPDI 258 (725)
Q Consensus 198 Gadvn~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~~G~TpL~~A~e~g~~~vd~~Lpdi 258 (725)
|++++. ++..|.||||+|+..++.+++..|.+.
T Consensus 125 ga~~~~----------------------------~~~~g~t~l~~A~~~~~~~~~~~L~~~ 157 (172)
T 3v30_A 125 GADLTT----------------------------EADSGYTPMDLAVALGYRKVQQVIENH 157 (172)
T ss_dssp TCCTTC----------------------------CCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCccc----------------------------cCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence 999874 566777899999999999998766544
No 72
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.88 E-value=2.6e-23 Score=201.74 Aligned_cols=156 Identities=23% Similarity=0.214 Sum_probs=129.4
Q ss_pred CCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccchhHHHHHHh-hCCchhhhcCCChHHHHHHHcCCHHHH
Q 004887 38 NDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMIGLWYSF-QRLSKKIVLQHRTPLMVAAEYGSVDVV 116 (725)
Q Consensus 38 ~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~~~~L~~a~-~~g~~~~~~~G~TPLh~Aa~~G~~eiV 116 (725)
++.++||.|+..|+.+++.. ++.. ....+..+..|.||||+|+..|+.+++
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~----------------------------ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v 55 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRL----------------------------WLDNTENDLNQGDDHGFSPLHWACREGRSAVV 55 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHH----------------------------HHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHH----------------------------HHhcCcccccccCCCCCCHHHHHHHcCcHHHH
Confidence 67899999998777665432 2222 223445567899999999999999999
Q ss_pred HHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHH
Q 004887 117 KLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLK 196 (725)
Q Consensus 117 k~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~ 196 (725)
++||+. |+++|.+ +..|.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+..|+ .+++++|++
T Consensus 56 ~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~----~~~v~~Ll~ 126 (179)
T 3f6q_A 56 EMLIMR-GARINVM-NRGDDTPLHLAASHGH---RDIVQKLLQYKADINAVNEHGNVPLHYACFWGQ----DQVAEDLVA 126 (179)
T ss_dssp HHHHHT-TCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHH
T ss_pred HHHHHc-CCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC----HHHHHHHHH
Confidence 999999 9999999 9999999999999999 999999999999999999999999999999854 559999999
Q ss_pred CCCCCCCccccccccccccccCCCCCCCCCCCccccccCCCCcccccccCCCcCccCCCCcc
Q 004887 197 NGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPIDPSLPDI 258 (725)
Q Consensus 197 ~Gadvn~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~~G~TpL~~A~e~g~~~vd~~Lpdi 258 (725)
+|++++. ++..|.|||++|+..++..+...|.+.
T Consensus 127 ~ga~~~~----------------------------~~~~g~tpl~~A~~~~~~~~~~~L~~~ 160 (179)
T 3f6q_A 127 NGALVSI----------------------------CNKYGEMPVDKAKAPLRELLRERAEKM 160 (179)
T ss_dssp TTCCSSB----------------------------CCTTSCCGGGGSCHHHHHHHHHHHHHT
T ss_pred CCCCcch----------------------------hccCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 9999874 566777889999888877776555443
No 73
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.88 E-value=6.9e-25 Score=234.75 Aligned_cols=173 Identities=12% Similarity=0.012 Sum_probs=127.9
Q ss_pred HHhhCCchh-hhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCC-CCC
Q 004887 87 YSFQRLSKK-IVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG-ADS 164 (725)
Q Consensus 87 ~a~~~g~~~-~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~G-ADi 164 (725)
...+.+++. .+..|+||||+|+..|+.++|++||++ |+++|.+ +.+|+||||+|+..|+....++++.||+.+ +++
T Consensus 117 ~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-Gad~n~~-d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~ 194 (327)
T 1sw6_A 117 PNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYG-DNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCL 194 (327)
T ss_dssp TTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTBC-CTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGG
T ss_pred HhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHhcccccHHHHHHHHHhhhccc
Confidence 334456666 688999999999999999999999999 9999999 999999999999988611136778888886 889
Q ss_pred CCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHC--------------------CCCCCCccccccccccccccCCCCCCC
Q 004887 165 NLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKN--------------------GGSVSFDELQVSSVDLRSSSSLSSSSD 224 (725)
Q Consensus 165 n~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~--------------------Gadvn~~d~~g~Tp~~~ass~ls~s~~ 224 (725)
+.+|..|+||||+|+..+...+..+++++|++. |++++.+|..|.||++.+.. .....
T Consensus 195 ~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~-~~~Ll- 272 (327)
T 1sw6_A 195 ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD-LKWII- 272 (327)
T ss_dssp GEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS-HHHHH-
T ss_pred cCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH-HHHHH-
Confidence 999999999999999832223556699999877 89999999999999887653 00001
Q ss_pred CCCCccccccCCCCcccccccCCCcCccCCCCcccccccc
Q 004887 225 DSSLSSLTCKSDDVHAFVAPEKKEYPIDPSLPDIKDSIYA 264 (725)
Q Consensus 225 ~~~~~~~~~~~G~TpL~~A~e~g~~~vd~~Lpdi~~~iy~ 264 (725)
..+++.++..|.||||+|++.|+.+++..|.+.+..+..
T Consensus 273 -~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~ 311 (327)
T 1sw6_A 273 -ANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFI 311 (327)
T ss_dssp -HHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTC
T ss_pred -HhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc
Confidence 115788999999999999999999998877765544443
No 74
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.87 E-value=1.9e-23 Score=198.28 Aligned_cols=154 Identities=19% Similarity=0.102 Sum_probs=130.1
Q ss_pred CCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHH
Q 004887 38 NDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVK 117 (725)
Q Consensus 38 ~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk 117 (725)
...||||+|+..|+.+++... +..+.+.+..+..|.||||+|+. |+.++++
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~L----------------------------l~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~ 54 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSL----------------------------LQNNVNVNAQNGFGRTALQVMKL-GNPEIAR 54 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHH----------------------------TTSCCCTTCCCTTSCCHHHHCCS-SCHHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHH----------------------------HhCCCCccccCccCccHHHHHHc-CcHHHHH
Confidence 467999999987776664322 12223334446689999999999 9999999
Q ss_pred HHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHC
Q 004887 118 LILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKN 197 (725)
Q Consensus 118 ~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~ 197 (725)
+|++. |++++.+ +..|.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+..|+ .+++++|+++
T Consensus 55 ~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~ 125 (162)
T 1ihb_A 55 RLLLR-GANPDLK-DRTGFAVIHDAARAGF---LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH----LRVVEFLVKH 125 (162)
T ss_dssp HHHHT-TCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHHH
T ss_pred HHHHc-CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC----HHHHHHHHHc
Confidence 99999 9999999 9999999999999999 999999999999999999999999999999854 5599999999
Q ss_pred CCCC-CCccccccccccccccCCCCCCCCCCCccccccCCCCcccccccCCCcCccCCCCc
Q 004887 198 GGSV-SFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPIDPSLPD 257 (725)
Q Consensus 198 Gadv-n~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~~G~TpL~~A~e~g~~~vd~~Lpd 257 (725)
|++. + ..+..|.||||+|++.++.+++..|.+
T Consensus 126 g~~~~~----------------------------~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 158 (162)
T 1ihb_A 126 TASNVG----------------------------HRNHKGDTACDLARLYGRNEVVSLMQA 158 (162)
T ss_dssp SCCCTT----------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCC----------------------------CcCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 9884 4 567778899999999999998765544
No 75
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.87 E-value=3.3e-22 Score=188.83 Aligned_cols=145 Identities=17% Similarity=0.153 Sum_probs=125.5
Q ss_pred CCcHHHHH--------HHHHHHC-CCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccchh
Q 004887 12 KSSPLKIS--------ISIFQKH-TQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNM 82 (725)
Q Consensus 12 G~TPLhiA--------vklLL~~-GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~~ 82 (725)
+.||||.| ++.|++. +.+++..|. .|+||||+ +..++.+ .
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~--~g~t~L~~-~~~~~~~----------------------------~ 50 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNR--FGKTALQV-MMFGSTA----------------------------I 50 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCT--TSCCHHHH-SCTTCHH----------------------------H
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCC--CCCcHHHH-HHcCCHH----------------------------H
Confidence 57999999 7788888 459999998 99999999 7544433 3
Q ss_pred HHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCC
Q 004887 83 IGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGA 162 (725)
Q Consensus 83 ~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GA 162 (725)
+.+++..+.+.+..+..|.||||+|+..|+.+++++|+++ |+++|.+ +..|.||||+|+..|+ .++|++|++. +
T Consensus 51 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~-~ 124 (156)
T 1bd8_A 51 ALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEH-GADVNVP-DGTGALPIHLAVQEGH---TAVVSFLAAE-S 124 (156)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCC-CTTSCCHHHHHHHHTC---HHHHHHHHTT-S
T ss_pred HHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCc-CCCCCcHHHHHHHhCh---HHHHHHHHhc-c
Confidence 3355555666666778899999999999999999999999 9999999 9999999999999999 9999999999 9
Q ss_pred CCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHC
Q 004887 163 DSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKN 197 (725)
Q Consensus 163 Din~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~ 197 (725)
+++.+|..|.||||+|+..|+ .+++++|+++
T Consensus 125 ~~~~~~~~g~t~l~~A~~~~~----~~~v~~Ll~~ 155 (156)
T 1bd8_A 125 DLHRRDARGLTPLELALQRGA----QDLVDILQGH 155 (156)
T ss_dssp CTTCCCTTSCCHHHHHHHSCC----HHHHHHHHTT
T ss_pred CCCCcCCCCCCHHHHHHHcCc----HHHHHHHHhh
Confidence 999999999999999999854 5599999864
No 76
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.87 E-value=6.9e-23 Score=190.35 Aligned_cols=134 Identities=21% Similarity=0.185 Sum_probs=118.3
Q ss_pred CCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccchhHHHHHHhhCCchhhhcCCChHHHH
Q 004887 27 TQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMV 106 (725)
Q Consensus 27 GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~ 106 (725)
+++++.+|. .|+||||+|+..++.+++ .+++..+.+.+..+..|+||||+
T Consensus 2 ~~~~~~~~~--~g~t~L~~A~~~~~~~~v----------------------------~~Ll~~g~~~~~~~~~g~t~L~~ 51 (136)
T 1d9s_A 2 SPGIHMLGG--SSDAGLATAAARGQVETV----------------------------RQLLEAGADPNALNRFGRRPIQV 51 (136)
T ss_dssp CCCCSCCCC--CCSCHHHHHHHTTCHHHH----------------------------HHHHHTTCCTTCCCTTCCTTTTT
T ss_pred CCCccCCCC--CCccHHHHHHHcCCHHHH----------------------------HHHHHcCCCcCCcCCCCCCHHHH
Confidence 578999998 999999999977665443 34444455566667889999999
Q ss_pred HHHcCCHHHHHHHHhcCCCCcccccCCC-CchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCC
Q 004887 107 AAEYGSVDVVKLILSLTKADVNLTCGLD-KSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVP 185 (725)
Q Consensus 107 Aa~~G~~eiVk~LLe~~GadVN~~~d~~-G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA~~~g~~e 185 (725)
|+. |+.+++++||++ |+++|.+ +.. |.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+..+
T Consensus 52 A~~-~~~~~v~~Ll~~-g~~~~~~-~~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~--- 122 (136)
T 1d9s_A 52 MMM-GSAQVAELLLLH-GAEPNCA-DPATLTRPVHDAAREGF---LDTLVVLHRAGARLDVCDAWGRLPVDLAEEQG--- 122 (136)
T ss_dssp STT-SCHHHHHHHHHH-TCCSSCC-BTTTTBCHHHHHHHHTC---HHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHT---
T ss_pred HHc-CCHHHHHHHHHC-CCCCCCc-CCCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC---
Confidence 999 999999999999 9999999 888 9999999999999 99999999999999999999999999999974
Q ss_pred CHHHHHHHHHHCCCC
Q 004887 186 DSRVSLEDLLKNGGS 200 (725)
Q Consensus 186 ~~~~ivelLL~~Gad 200 (725)
..+++++|+++|+|
T Consensus 123 -~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 123 -HRDIARYLHAATGD 136 (136)
T ss_dssp -CHHHHHHHHHHHCC
T ss_pred -CHHHHHHHHHcCCC
Confidence 45699999999986
No 77
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.87 E-value=4.9e-23 Score=194.57 Aligned_cols=150 Identities=18% Similarity=0.131 Sum_probs=127.3
Q ss_pred CChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccchhHHHHHHh-hCCchhhhcCCChHHHHHHHcCCHHHHH
Q 004887 39 DRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMIGLWYSF-QRLSKKIVLQHRTPLMVAAEYGSVDVVK 117 (725)
Q Consensus 39 G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~~~~L~~a~-~~g~~~~~~~G~TPLh~Aa~~G~~eiVk 117 (725)
|.|+||+|+..|+.+++.. ++.. ..+.+..+..|.||||+ +..|+.++++
T Consensus 2 ~~~~L~~A~~~g~~~~v~~----------------------------ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~ 52 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRR----------------------------LLHRELVHPDALNRFGKTALQV-MMFGSTAIAL 52 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHH----------------------------HHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHH
T ss_pred cchHHHHHHHhCCHHHHHH----------------------------HHHhhCcCccccCCCCCcHHHH-HHcCCHHHHH
Confidence 5799999998777665432 2222 22444556789999999 9999999999
Q ss_pred HHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHC
Q 004887 118 LILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKN 197 (725)
Q Consensus 118 ~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~ 197 (725)
+|+++ |+++|.+ +..|.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+..|+ .+++++|+++
T Consensus 53 ~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~ 123 (156)
T 1bd8_A 53 ELLKQ-GASPNVQ-DTSGTSPVHDAARTGF---LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH----TAVVSFLAAE 123 (156)
T ss_dssp HHHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTC----HHHHHHHHTT
T ss_pred HHHHC-CCCCCCc-CCCCCCHHHHHHHcCc---HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhCh----HHHHHHHHhc
Confidence 99999 9999999 9999999999999999 999999999999999999999999999999754 5599999998
Q ss_pred CCCCCCccccccccccccccCCCCCCCCCCCccccccCCCCcccccccCCCcCccCCC
Q 004887 198 GGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPIDPSL 255 (725)
Q Consensus 198 Gadvn~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~~G~TpL~~A~e~g~~~vd~~L 255 (725)
++++ .++..|.||||+|++.|+.+++..|
T Consensus 124 -~~~~----------------------------~~~~~g~t~l~~A~~~~~~~~v~~L 152 (156)
T 1bd8_A 124 -SDLH----------------------------RRDARGLTPLELALQRGAQDLVDIL 152 (156)
T ss_dssp -SCTT----------------------------CCCTTSCCHHHHHHHSCCHHHHHHH
T ss_pred -cCCC----------------------------CcCCCCCCHHHHHHHcCcHHHHHHH
Confidence 8776 4567788999999999998887544
No 78
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.86 E-value=1.3e-22 Score=192.85 Aligned_cols=137 Identities=21% Similarity=0.142 Sum_probs=102.7
Q ss_pred CCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHH
Q 004887 38 NDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVK 117 (725)
Q Consensus 38 ~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk 117 (725)
.|.||||+|+..|+.+++. +++..+.+.+..+..|+||||+|+ .|+.++++
T Consensus 11 ~~~t~L~~A~~~g~~~~v~----------------------------~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~ 61 (156)
T 1bi7_B 11 PSADWLATAAARGRVEEVR----------------------------ALLEAGANPNAPNSYGRRPIQVMM-MGSARVAE 61 (156)
T ss_dssp CSTTHHHHHHHHTCHHHHH----------------------------HHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHH
T ss_pred cchHHHHHHHHcCCHHHHH----------------------------HHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHH
Confidence 7888888888766555432 223333344455668899999985 89999999
Q ss_pred HHHhcCCCCcccccCCCCch-HHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHH
Q 004887 118 LILSLTKADVNLTCGLDKST-ALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLK 196 (725)
Q Consensus 118 ~LLe~~GadVN~~~d~~G~T-pLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~ 196 (725)
+||++ |+++|.+ +..|.| |||+|+..|+ .++|++||++|++++.+|..|+||||+|+..| ..+++++|++
T Consensus 62 ~Ll~~-g~~~~~~-d~~g~ttpL~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~----~~~~v~~Ll~ 132 (156)
T 1bi7_B 62 LLLLH-GAEPNCA-DPATLTRPVHDAAREGF---LDTLVVLHRAGARLDVRDAWGRLPVDLAEELG----HRDVARYLRA 132 (156)
T ss_dssp HHHTT-TCCCCCC-CTTTCCCHHHHHHHHTC---HHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHT----CHHHHHHHSS
T ss_pred HHHHc-CCCCCCc-CCCCCcHHHHHHHHCCC---HHHHHHHHHcCCCCcccCCCCCCHHHHHHHhC----HHHHHHHHHH
Confidence 99999 9999999 899999 9999999999 99999999999999999999999999999974 4559999999
Q ss_pred CCCCCCCccccccccc
Q 004887 197 NGGSVSFDELQVSSVD 212 (725)
Q Consensus 197 ~Gadvn~~d~~g~Tp~ 212 (725)
+|++++.+|..|.|+.
T Consensus 133 ~ga~~~~~~~~g~t~~ 148 (156)
T 1bi7_B 133 AAGGTRGSNHARIDAA 148 (156)
T ss_dssp CC--------------
T ss_pred cCCCCCccCcCcCccc
Confidence 9999998888887773
No 79
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.86 E-value=2.1e-23 Score=212.58 Aligned_cols=175 Identities=14% Similarity=-0.007 Sum_probs=146.7
Q ss_pred ccCCccCCC---CCCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCC
Q 004887 2 VAVPAVTMR---NKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSA 70 (725)
Q Consensus 2 ~Adpdv~d~---~G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa 70 (725)
.++|+..+. +|.||||+| +++|++.|+++|.+|. .|+||||+|+..++.++
T Consensus 8 ~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~--~g~tpLh~A~~~g~~~~---------------- 69 (229)
T 2vge_A 8 AGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNE--EGITALHNAICGANYSI---------------- 69 (229)
T ss_dssp --CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCT--TSCCHHHHHHHTTCHHH----------------
T ss_pred CCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCC--CCCCHHHHHHHcCCHHH----------------
Confidence 356665544 566789999 8899999999999998 99999999997765544
Q ss_pred CCCCCCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHH--HhCCCC
Q 004887 71 SPPSKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCA--ASGGSV 148 (725)
Q Consensus 71 ~~~~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~A--a~~G~~ 148 (725)
+.+++..+.+.+..+..|+||||+|+..|+.++|++||+. |++++...+.+|+||||+| +..|+
T Consensus 70 ------------v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~g~tpL~~A~a~~~~~- 135 (229)
T 2vge_A 70 ------------VDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQH-GAAIFATTLSDGATAFEKCDPYREGY- 135 (229)
T ss_dssp ------------HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCSSTTCCTGGGCCTTSTTH-
T ss_pred ------------HHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCCHHHHHHHHhcCh-
Confidence 3355555666777788999999999999999999999999 9999998447999999999 89998
Q ss_pred CHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCCC--CCCcccccccccccccc
Q 004887 149 NAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGS--VSFDELQVSSVDLRSSS 217 (725)
Q Consensus 149 ~~~eiVklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Gad--vn~~d~~g~Tp~~~ass 217 (725)
.+++++|++.|++++.+|..|.||++.++... ..++|++.|++ ++.+|..|.||++.+..
T Consensus 136 --~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~-------~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~ 197 (229)
T 2vge_A 136 --ADCATYLADVEQSMGLMNSGAVYALWDYSAEF-------GDELSFREGESVTVLRRDGPEETDWWWAAL 197 (229)
T ss_dssp --HHHHHHHHHHHHHTTTSGGGEEEESSCBCCSS-------TTBCCBCTTCEEEEEESSCTTCSSEEEEEE
T ss_pred --HHHHHHHHHcCCCcccccCCchHHHHHHhhcc-------ccccCccccccccccccCCCcccHHHHHHH
Confidence 99999999999999999999999999765532 34678899998 77889999999987644
No 80
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.86 E-value=2.1e-22 Score=205.41 Aligned_cols=159 Identities=21% Similarity=0.143 Sum_probs=112.0
Q ss_pred CCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHH
Q 004887 37 INDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVV 116 (725)
Q Consensus 37 ~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiV 116 (725)
+.|.||||.|+..++.+.... + +..+.+.+ ....|.||||+|+..|+.++|
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~-------l---------------------l~~g~~~~-~~~~~~t~L~~A~~~g~~~~v 53 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSE-------R---------------------IAHGMRVK-FNPLPLALLLDSSLEGEFDLV 53 (239)
T ss_dssp ---------------------------------------------------------------CHHHHHHHHHHTCHHHH
T ss_pred ccccccCchhhhhhhHHHHHH-------H---------------------hccCCCcc-cCchhhHHHHHHHHcCCHHHH
Confidence 479999999997655443322 1 11122221 134689999999999999999
Q ss_pred HHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHH
Q 004887 117 KLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLK 196 (725)
Q Consensus 117 k~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~ 196 (725)
++||+. |+++|.+ +..|.||||+||..|+ .++|++||++|+|+|.+|..|+||||+|+..|+ .+++++|++
T Consensus 54 ~~Ll~~-g~~~~~~-d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~----~~~v~~Ll~ 124 (239)
T 1ycs_B 54 QRIIYE-VDDPSLP-NDEGITALHNAVCAGH---TEIVKFLVQFGVNVNAADSDGWTPLHCAASCNN----VQVCKFLVE 124 (239)
T ss_dssp HHHTST-TSSCCCC-CTTSCCHHHHHHHHTC---HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC----HHHHHHHHH
T ss_pred HHHHHc-CCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC----HHHHHHHHH
Confidence 999999 9999999 9999999999999999 999999999999999999999999999999855 559999999
Q ss_pred CCCCCCCccccccccccccccCCCCCCCCCCCccccccCCC-Cccccc--ccCCCcCccCCCCccccc
Q 004887 197 NGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDD-VHAFVA--PEKKEYPIDPSLPDIKDS 261 (725)
Q Consensus 197 ~Gadvn~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~~G~-TpL~~A--~e~g~~~vd~~Lpdi~~~ 261 (725)
+|++++. .+..|. ||||+| +++|+.+++..|.+.+..
T Consensus 125 ~ga~~~~----------------------------~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~ 164 (239)
T 1ycs_B 125 SGAAVFA----------------------------MTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK 164 (239)
T ss_dssp TTCCTTC----------------------------CCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHH
T ss_pred cCCCcce----------------------------ecCCCCcchHHHHHHhhhccHHHHHHHHHhhhc
Confidence 9999985 344444 889998 788999998777654433
No 81
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.85 E-value=8.3e-23 Score=202.16 Aligned_cols=130 Identities=12% Similarity=0.030 Sum_probs=112.6
Q ss_pred cCCChHHHHHHHcCCH----HHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCH---HHHHHHHHHCCCCCCCcCCC
Q 004887 98 LQHRTPLMVAAEYGSV----DVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNA---VDVVKLLLFAGADSNLTDAH 170 (725)
Q Consensus 98 ~~G~TPLh~Aa~~G~~----eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~---~eiVklLL~~GADin~~D~~ 170 (725)
..|+||||+|+..|+. +++++||++ |+|||.+ +.+|+||||+|+..|+.+. .++|++||++|||+|.+|..
T Consensus 36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~-Gadvn~~-d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~ 113 (186)
T 3t8k_A 36 VLKSNILYDVLRNNNDEARYKISMFLINK-GADIKSR-TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKP 113 (186)
T ss_dssp HHTTTHHHHHTTCSCHHHHHHHHHHHHHT-TCCSSCC-CTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGG
T ss_pred cCCCCHHHHHHHcCCcchHHHHHHHHHHC-CCCCCCC-CCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCC
Confidence 6799999999999975 599999999 9999999 8999999999999886332 58999999999999999999
Q ss_pred CC-cHHHHHHhCCCC-CCHHHHHHHHHH-CCCCCCCccccccccccccccCCCCCCCCCCCccccccCCCCcccccccCC
Q 004887 171 GN-RPFDVIVVHPNV-PDSRVSLEDLLK-NGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKK 247 (725)
Q Consensus 171 G~-TPLhlA~~~g~~-e~~~~ivelLL~-~Gadvn~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~~G~TpL~~A~e~g 247 (725)
|+ ||||+|+..+.. ....+++++|++ +|++++ .+|+.|.||||+|++.+
T Consensus 114 g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~----------------------------~~d~~G~TpL~~A~~~~ 165 (186)
T 3t8k_A 114 YKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL----------------------------IKDKWGLTALEFVKRCQ 165 (186)
T ss_dssp GTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT----------------------------CCCTTSCCHHHHHHTTT
T ss_pred cCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc----------------------------ccCCCCCCHHHHHHHcC
Confidence 99 999999985433 245679999999 999998 46677778899999999
Q ss_pred CcCccCCCCc
Q 004887 248 EYPIDPSLPD 257 (725)
Q Consensus 248 ~~~vd~~Lpd 257 (725)
+.+++..|.+
T Consensus 166 ~~~~v~~L~~ 175 (186)
T 3t8k_A 166 KPIALKMMED 175 (186)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9988765554
No 82
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.85 E-value=1.2e-21 Score=181.81 Aligned_cols=124 Identities=21% Similarity=0.118 Sum_probs=111.5
Q ss_pred hhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHH
Q 004887 96 IVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPF 175 (725)
Q Consensus 96 ~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPL 175 (725)
.+..|.||||+|+..|+.+++++||+. |++++.+ +..|.||||+|+..|+ .+++++|++.|++++.+|..|+|||
T Consensus 6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L 80 (137)
T 3c5r_A 6 TNHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVK-DHAGWTPLHEACNHGH---LKVVELLLQHKALVNTTGYQNDSPL 80 (137)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCGGGCCHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCcccCcCCCCCCHH
Confidence 457899999999999999999999999 9999999 9999999999999999 9999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHCCCCCCCccccccccccccccCCCCCCCCCCCccccccCCCCcccccccCCCcCccCCC
Q 004887 176 DVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPIDPSL 255 (725)
Q Consensus 176 hlA~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~~G~TpL~~A~e~g~~~vd~~L 255 (725)
|+|+..|+ .+++++|+++|++++. ++..|.|||++|+..+..++...|
T Consensus 81 ~~A~~~~~----~~~v~~Ll~~ga~~~~----------------------------~~~~g~tpl~~A~~~~~~~~l~~l 128 (137)
T 3c5r_A 81 HDAAKNGH----VDIVKLLLSYGASRNA----------------------------VNIFGLRPVDYTDDESMKSLLLLP 128 (137)
T ss_dssp HHHHHTTC----HHHHHHHHHTTCCTTC----------------------------CCTTSCCGGGGCCCHHHHHHHSCC
T ss_pred HHHHHcCC----HHHHHHHHHcCCCCCC----------------------------CCCCCCCHHHHHhhccHHHHHhhc
Confidence 99999854 5599999999999974 566777889999888877776544
Q ss_pred C
Q 004887 256 P 256 (725)
Q Consensus 256 p 256 (725)
.
T Consensus 129 ~ 129 (137)
T 3c5r_A 129 E 129 (137)
T ss_dssp -
T ss_pred c
Confidence 3
No 83
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.85 E-value=1.4e-22 Score=188.20 Aligned_cols=127 Identities=23% Similarity=0.183 Sum_probs=114.2
Q ss_pred CchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCC-
Q 004887 92 LSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAH- 170 (725)
Q Consensus 92 g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~- 170 (725)
+.+..+..|.||||+|+..|+.+++++||++ |+++|.+ +..|+||||+|+. |+ .++|++|+++|++++.+|..
T Consensus 4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~-~~---~~~v~~Ll~~g~~~~~~~~~~ 77 (136)
T 1d9s_A 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEA-GADPNAL-NRFGRRPIQVMMM-GS---AQVAELLLLHGAEPNCADPAT 77 (136)
T ss_dssp CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCTTTTTSTT-SC---HHHHHHHHHHTCCSSCCBTTT
T ss_pred CccCCCCCCccHHHHHHHcCCHHHHHHHHHc-CCCcCCc-CCCCCCHHHHHHc-CC---HHHHHHHHHCCCCCCCcCCCC
Confidence 3455567899999999999999999999999 9999999 9999999999999 99 99999999999999999999
Q ss_pred CCcHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCccccccccccccccCCCCCCCCCCCccccccCCCCcccccccCCCcC
Q 004887 171 GNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYP 250 (725)
Q Consensus 171 G~TPLhlA~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~~G~TpL~~A~e~g~~~ 250 (725)
|+||||+|+..|+ .+++++|+++|++++. ++..|.||||+|++.++.+
T Consensus 78 g~t~L~~A~~~~~----~~~v~~Ll~~ga~~~~----------------------------~d~~g~tpl~~A~~~~~~~ 125 (136)
T 1d9s_A 78 LTRPVHDAAREGF----LDTLVVLHRAGARLDV----------------------------CDAWGRLPVDLAEEQGHRD 125 (136)
T ss_dssp TBCHHHHHHHHTC----HHHHHHHHHTCCCCCC----------------------------CSSSSSCHHHHHHHHTCHH
T ss_pred CCCHHHHHHHcCC----HHHHHHHHHcCCCCCc----------------------------cCCCCCCHHHHHHHcCCHH
Confidence 9999999999754 5599999999999874 5667778899999999988
Q ss_pred ccCCCC
Q 004887 251 IDPSLP 256 (725)
Q Consensus 251 vd~~Lp 256 (725)
++..|.
T Consensus 126 ~~~~Ll 131 (136)
T 1d9s_A 126 IARYLH 131 (136)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 84
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.84 E-value=1.4e-20 Score=169.79 Aligned_cols=126 Identities=37% Similarity=0.404 Sum_probs=110.2
Q ss_pred CCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHH
Q 004887 38 NDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVK 117 (725)
Q Consensus 38 ~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk 117 (725)
+|+||||+|+..++.+++. +++..+.+.+..+..|.||||+|+..|+.++++
T Consensus 1 ~g~t~L~~A~~~~~~~~v~----------------------------~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~ 52 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVK----------------------------LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 52 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHH----------------------------HHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred CCccHHHHHHHcCcHHHHH----------------------------HHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHH
Confidence 5899999999877655532 333334445556678999999999999999999
Q ss_pred HHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHC
Q 004887 118 LILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKN 197 (725)
Q Consensus 118 ~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~ 197 (725)
+|++. |++++.+ +..|.||||+|+..|+ .+++++|++.|++++.+|..|.||||+|+..+ ..+++++|+++
T Consensus 53 ~Ll~~-g~~~~~~-~~~g~t~l~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~----~~~~~~~Ll~~ 123 (126)
T 1n0r_A 53 LLLEA-GADVNAK-DKNGRTPLHLAARNGH---LEVVKLLLEAGADVNAKDKNGRTPLHLAARNG----HLEVVKLLLEA 123 (126)
T ss_dssp HHHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT----CHHHHHHHHHH
T ss_pred HHHHc-CCCCccc-CCCCCcHHHHHHHcCh---HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC----cHHHHHHHHHc
Confidence 99999 9999999 9999999999999999 99999999999999999999999999999985 45599999999
Q ss_pred CCC
Q 004887 198 GGS 200 (725)
Q Consensus 198 Gad 200 (725)
|+|
T Consensus 124 Gad 126 (126)
T 1n0r_A 124 GAY 126 (126)
T ss_dssp TCC
T ss_pred CCC
Confidence 986
No 85
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.84 E-value=8.7e-22 Score=182.92 Aligned_cols=121 Identities=27% Similarity=0.268 Sum_probs=110.5
Q ss_pred cCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHH
Q 004887 98 LQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDV 177 (725)
Q Consensus 98 ~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhl 177 (725)
..+.||||+|+..|+.++|++||++ |+++|.+ +..|.||||+|+..|+ .++|++|++.|++++.+|..|+||||+
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~d~~g~t~L~~ 86 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMAN-GADVNAK-DEYGLTPLYLATAHGH---LEIVEVLLKNGADVNAVDAIGFTPLHL 86 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCcCCCCCCCHHHH
Confidence 4578999999999999999999999 9999999 9999999999999999 999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHCCCCCCCccccccccccccccCCCCCCCCCCCccccccCCCCcccccccCCCcCccCCC
Q 004887 178 IVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPIDPSL 255 (725)
Q Consensus 178 A~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~~G~TpL~~A~e~g~~~vd~~L 255 (725)
|+..|+ .+++++|+++|++++. ++..|.||||+|+..++.+++..|
T Consensus 87 A~~~~~----~~~v~~Ll~~g~~~~~----------------------------~~~~g~tpl~~A~~~~~~~~~~~L 132 (136)
T 2jab_A 87 AAFIGH----LEIAEVLLKHGADVNA----------------------------QDKFGKTAFDISIGNGNEDLAEIL 132 (136)
T ss_dssp HHHHTC----HHHHHHHHHTTCCTTC----------------------------CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHcCC----HHHHHHHHHcCCCCcC----------------------------cCCCCCCHHHHHHHCCCHHHHHHH
Confidence 999754 5599999999999874 566777889999999998886544
No 86
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.83 E-value=1.5e-20 Score=174.48 Aligned_cols=124 Identities=26% Similarity=0.203 Sum_probs=108.8
Q ss_pred CCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHH
Q 004887 38 NDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVK 117 (725)
Q Consensus 38 ~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk 117 (725)
.|.||||+|+..|+.+++ .+++..+.+.+..+..|.||||+|+..|+.++++
T Consensus 13 ~~~t~l~~A~~~g~~~~v----------------------------~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 64 (136)
T 2jab_A 13 DLGKKLLEAARAGQDDEV----------------------------RILMANGADVNAKDEYGLTPLYLATAHGHLEIVE 64 (136)
T ss_dssp HHHHHHHHHHHHTCHHHH----------------------------HHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred cccHHHHHHHHhCCHHHH----------------------------HHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence 689999999987666553 2444445556666778999999999999999999
Q ss_pred HHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHC
Q 004887 118 LILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKN 197 (725)
Q Consensus 118 ~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~ 197 (725)
+||++ |+++|.+ +..|.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+..|+ .+++++|+++
T Consensus 65 ~Ll~~-g~~~~~~-d~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~----~~~~~~Ll~~ 135 (136)
T 2jab_A 65 VLLKN-GADVNAV-DAIGFTPLHLAAFIGH---LEIAEVLLKHGADVNAQDKFGKTAFDISIGNGN----EDLAEILQKL 135 (136)
T ss_dssp HHHHT-TCCTTCC-CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHHC
T ss_pred HHHHc-CCCCCcC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCC----HHHHHHHHHc
Confidence 99999 9999999 9999999999999999 999999999999999999999999999999844 5599999988
Q ss_pred C
Q 004887 198 G 198 (725)
Q Consensus 198 G 198 (725)
|
T Consensus 136 G 136 (136)
T 2jab_A 136 N 136 (136)
T ss_dssp -
T ss_pred C
Confidence 6
No 87
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.83 E-value=5.4e-21 Score=174.21 Aligned_cols=100 Identities=28% Similarity=0.319 Sum_probs=91.9
Q ss_pred cCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHH
Q 004887 98 LQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDV 177 (725)
Q Consensus 98 ~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhl 177 (725)
..|.||||+|+..|+.+++++||+. |+++|.+ +..|+||||+|+..|+ .++|++|++.|++++.+|..|+||||+
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~d~~g~tpL~~ 79 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRT-LEGGRKPLHYAADCGQ---LEILEFLLLKGADINAPDKHHITPLLS 79 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSC-CTTSSCHHHHHHHTTC---HHHHHHHHTTTCCTTCCCTTSCCHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHc-CCCcCcc-CCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCcCCCCCCCHHHH
Confidence 4688999999999999999999999 9999999 9999999999999999 999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHCCCCCCCccc
Q 004887 178 IVVHPNVPDSRVSLEDLLKNGGSVSFDEL 206 (725)
Q Consensus 178 A~~~g~~e~~~~ivelLL~~Gadvn~~d~ 206 (725)
|+..++ .+++++|+++|++++.+|.
T Consensus 80 A~~~~~----~~~v~~Ll~~ga~~~~~~~ 104 (123)
T 3aaa_C 80 AVYEGH----VSCVKLLLSKGADKTVKGP 104 (123)
T ss_dssp HHHHTC----HHHHHHHHHTTCCTTCCCT
T ss_pred HHHcCC----HHHHHHHHHcCCCCCCcCC
Confidence 999754 5599999999999985443
No 88
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.83 E-value=4.6e-21 Score=172.98 Aligned_cols=121 Identities=36% Similarity=0.452 Sum_probs=110.8
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHH
Q 004887 99 QHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVI 178 (725)
Q Consensus 99 ~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA 178 (725)
+|.||||+|+..|+.+++++|++. |++++.. +..|.||||+|+..|+ .+++++|++.|++++.+|..|.||||+|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~l~~A 75 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAK-DKNGRTPLHLAARNGH---LEVVKLLLEAGADVNAKDKNGRTPLHLA 75 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHc-CCCCCCc-CCCCCcHHHHHHHcCc---HHHHHHHHHcCCCCcccCCCCCcHHHHH
Confidence 589999999999999999999999 9999999 9999999999999999 9999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHCCCCCCCccccccccccccccCCCCCCCCCCCccccccCCCCcccccccCCCcCccCCCC
Q 004887 179 VVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPIDPSLP 256 (725)
Q Consensus 179 ~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~~G~TpL~~A~e~g~~~vd~~Lp 256 (725)
+..++ .+++++|+++|++++. ++..|.|||++|+..++++++..|.
T Consensus 76 ~~~~~----~~~~~~Ll~~g~~~~~----------------------------~~~~g~t~l~~A~~~~~~~~~~~Ll 121 (126)
T 1n0r_A 76 ARNGH----LEVVKLLLEAGADVNA----------------------------KDKNGRTPLHLAARNGHLEVVKLLL 121 (126)
T ss_dssp HHTTC----HHHHHHHHHTTCCTTC----------------------------CCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHcCh----HHHHHHHHHcCCCCcc----------------------------cCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 99854 5599999999999874 5566778899999999988876554
No 89
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.82 E-value=1.7e-21 Score=192.66 Aligned_cols=160 Identities=9% Similarity=0.023 Sum_probs=126.7
Q ss_pred CCcHHHHH--------HHHHHHCCCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccchhH
Q 004887 12 KSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMI 83 (725)
Q Consensus 12 G~TPLhiA--------vklLL~~GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~~~ 83 (725)
++++|+.| ++.++.. +++.++ |..|+||||+|+..++.+. ....+
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~--~~~~~~-~~~g~T~Lh~A~~~~~~~~------------------------~~~iv 58 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEK--GYEDKE-SVLKSNILYDVLRNNNDEA------------------------RYKIS 58 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHH--SSSCHH-HHHTTTHHHHHTTCSCHHH------------------------HHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhc--Cccccc-ccCCCCHHHHHHHcCCcch------------------------HHHHH
Confidence 56788888 4445544 456666 2389999999996543321 12345
Q ss_pred HHHHHhhCCchhhhcCCChHHHHHHHcCC------HHHHHHHHhcCCCCcccccCCCCc-hHHHHHHhCCCC--CHHHHH
Q 004887 84 GLWYSFQRLSKKIVLQHRTPLMVAAEYGS------VDVVKLILSLTKADVNLTCGLDKS-TALHCAASGGSV--NAVDVV 154 (725)
Q Consensus 84 ~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~------~eiVk~LLe~~GadVN~~~d~~G~-TpLH~Aa~~G~~--~~~eiV 154 (725)
.+++..+.+++..+.+|+||||+|+..|+ .+++++||++ |+|||.+ |..|+ ||||+|+..+.. ...+++
T Consensus 59 ~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~-Gadin~~-d~~g~ttpLh~A~~~~~~~~~~~~iv 136 (186)
T 3t8k_A 59 MFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK-GADITAL-YKPYKIVVFKNIFNYFVDENEMIPLY 136 (186)
T ss_dssp HHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHT-TCCSSSC-BGGGTBCTTGGGGGCCSCHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHC-CCCCCcc-CCCcCchHHHHHHHcCCChhhHHHHH
Confidence 57778888888889999999999999987 6899999999 9999999 99999 999999996541 125799
Q ss_pred HHHHH-CCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCc
Q 004887 155 KLLLF-AGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFD 204 (725)
Q Consensus 155 klLL~-~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Gadvn~~ 204 (725)
++||+ .|+|++.+|..|+||||+|+.. +..+++++|++...+.+.+
T Consensus 137 ~~Ll~~~gad~~~~d~~G~TpL~~A~~~----~~~~~v~~L~~~~~~~~~~ 183 (186)
T 3t8k_A 137 KLIFSQSGLQLLIKDKWGLTALEFVKRC----QKPIALKMMEDYIKKYNLK 183 (186)
T ss_dssp HHHHTSTTCCTTCCCTTSCCHHHHHHTT----TCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhcCCCCcccCCCCCCHHHHHHHc----CCHHHHHHHHHHHHHHhcc
Confidence 99999 9999999999999999999997 4455888888765555443
No 90
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.82 E-value=4.8e-21 Score=177.66 Aligned_cols=133 Identities=30% Similarity=0.289 Sum_probs=108.3
Q ss_pred CCCccCcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccchhHHHHHHhhCCchhhhcCCChHHHH
Q 004887 27 TQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMV 106 (725)
Q Consensus 27 GADVN~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~ 106 (725)
|+|+ .+|. +|+||||+|+..++.+++ .+++..+.+.+..+..|.||||+
T Consensus 1 G~d~-~~~~--~g~t~L~~A~~~~~~~~~----------------------------~~Ll~~g~~~~~~~~~g~t~L~~ 49 (137)
T 3c5r_A 1 GIDP-FTNH--RGETLLHIASIKGDIPSV----------------------------EYLLQNGSDPNVKDHAGWTPLHE 49 (137)
T ss_dssp ---C-CCCT--TCCCHHHHHHHHTCHHHH----------------------------HHHHHTTCCSCCCCTTSCCHHHH
T ss_pred CCCC-CcCC--CCCCHHHHHHHcCCHHHH----------------------------HHHHHcCCCCCcCCCCCCCHHHH
Confidence 6778 6666 999999999987665543 23344444555567789999999
Q ss_pred HHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCC
Q 004887 107 AAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPD 186 (725)
Q Consensus 107 Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA~~~g~~e~ 186 (725)
|+..|+.+++++|+++ |++++.+ +..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+.. +
T Consensus 50 A~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~----~ 120 (137)
T 3c5r_A 50 ACNHGHLKVVELLLQH-KALVNTT-GYQNDSPLHDAAKNGH---VDIVKLLLSYGASRNAVNIFGLRPVDYTDDE----S 120 (137)
T ss_dssp HHHTTCHHHHHHHHHT-TCCTTCC-CGGGCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCGGGGCCCH----H
T ss_pred HHHcCCHHHHHHHHHc-CCcccCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCCCCCCCCHHHHHhhc----c
Confidence 9999999999999999 9999999 9999999999999999 9999999999999999999999999999874 6
Q ss_pred HHHHHHHHHHCCC
Q 004887 187 SRVSLEDLLKNGG 199 (725)
Q Consensus 187 ~~~ivelLL~~Ga 199 (725)
..+++++|.+.+.
T Consensus 121 ~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 121 MKSLLLLPEKNES 133 (137)
T ss_dssp HHHHHSCC-----
T ss_pred HHHHHhhcccccc
Confidence 6678877776543
No 91
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.82 E-value=1.8e-21 Score=185.03 Aligned_cols=130 Identities=20% Similarity=0.146 Sum_probs=110.8
Q ss_pred hhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCc-H
Q 004887 96 IVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNR-P 174 (725)
Q Consensus 96 ~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~T-P 174 (725)
.+..|.||||+|+..|+.++|++||++ |+++|.+ +..|+||||+|+ .|+ .++|++|+++|++++.+|..|+| |
T Consensus 8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~-~~~---~~~v~~Ll~~g~~~~~~d~~g~ttp 81 (156)
T 1bi7_B 8 SMEPSADWLATAAARGRVEEVRALLEA-GANPNAP-NSYGRRPIQVMM-MGS---ARVAELLLLHGAEPNCADPATLTRP 81 (156)
T ss_dssp --CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCC-CSSSCCTTTSSC-TTC---HHHHHHHHTTTCCCCCCCTTTCCCH
T ss_pred CCccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHH-cCC---HHHHHHHHHcCCCCCCcCCCCCcHH
Confidence 356799999999999999999999999 9999999 999999999985 888 99999999999999999999999 9
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHCCCCCCCccccccccccccccCCCCCCCCCCCccccccCCCCcccccccCCCcCccCC
Q 004887 175 FDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPIDPS 254 (725)
Q Consensus 175 LhlA~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~~G~TpL~~A~e~g~~~vd~~ 254 (725)
||+|+..|+ .+++++|+++|++++. ++..|.||||+|+..++.+++..
T Consensus 82 L~~A~~~~~----~~~v~~Ll~~ga~~~~----------------------------~d~~g~tpl~~A~~~~~~~~v~~ 129 (156)
T 1bi7_B 82 VHDAAREGF----LDTLVVLHRAGARLDV----------------------------RDAWGRLPVDLAEELGHRDVARY 129 (156)
T ss_dssp HHHHHHHTC----HHHHHHHHHHTCCSSC----------------------------CCTTCCCHHHHHHHHTCHHHHHH
T ss_pred HHHHHHCCC----HHHHHHHHHcCCCCcc----------------------------cCCCCCCHHHHHHHhCHHHHHHH
Confidence 999999754 5599999999999985 45566778888888888888776
Q ss_pred CCccccccc
Q 004887 255 LPDIKDSIY 263 (725)
Q Consensus 255 Lpdi~~~iy 263 (725)
|...+..+.
T Consensus 130 Ll~~ga~~~ 138 (156)
T 1bi7_B 130 LRAAAGGTR 138 (156)
T ss_dssp HSSCC----
T ss_pred HHHcCCCCC
Confidence 665544433
No 92
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.81 E-value=6.5e-20 Score=159.15 Aligned_cols=93 Identities=42% Similarity=0.559 Sum_probs=87.2
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHH
Q 004887 99 QHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVI 178 (725)
Q Consensus 99 ~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA 178 (725)
+|+||||+|+..|+.+++++|++. |+++|.+ +..|+||||+|+..|+ .++|++|++.|++++.+|..|+||||+|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~n~~-d~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~t~l~~A 75 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAK-DKNGRTPLHLAARNGH---LEVVKLLLEAGADVNAKDKNGRTPLHLA 75 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHc-CCCCccc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence 489999999999999999999999 9999999 9999999999999999 9999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHCCCC
Q 004887 179 VVHPNVPDSRVSLEDLLKNGGS 200 (725)
Q Consensus 179 ~~~g~~e~~~~ivelLL~~Gad 200 (725)
+..| ..+++++|+++|++
T Consensus 76 ~~~~----~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 76 ARNG----HLEVVKLLLEAGAY 93 (93)
T ss_dssp HHTT----CHHHHHHHHHTTCC
T ss_pred HHcC----CHHHHHHHHHcCCC
Confidence 9985 45599999999985
No 93
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.81 E-value=9.9e-21 Score=189.89 Aligned_cols=128 Identities=19% Similarity=0.171 Sum_probs=112.5
Q ss_pred hhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHC-CCCCCCcCCCCCc
Q 004887 95 KIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFA-GADSNLTDAHGNR 173 (725)
Q Consensus 95 ~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~-GADin~~D~~G~T 173 (725)
..+..|.||||+|+..|+.++|++||+. |+++|.+ +..|+||||+||..|+ .++|++||+. |++++.+|..|+|
T Consensus 68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~~g~~~~~~d~~g~t 142 (222)
T 3ehr_A 68 EQAESIDNPLHEAAKRGNLSWLRECLDN-RVGVNGL-DKAGSTALYWACHGGH---KDIVEMLFTQPNIELNQQNKLGDT 142 (222)
T ss_dssp HHEEEESCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHTTSTTCCCCCCCTTSCC
T ss_pred ccccccccccccccccCcHHHHHHHHhC-CCCcccc-CCCCCCHHHHHHHcCC---HHHHHHHHcCCCCCccccCCCCCC
Confidence 3457899999999999999999999999 9999999 9999999999999999 9999999999 9999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHCCCCCCCccccccccccccccCCCCCCCCCCCccccccCCCCcccccccCCCcCccC
Q 004887 174 PFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPIDP 253 (725)
Q Consensus 174 PLhlA~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~~G~TpL~~A~e~g~~~vd~ 253 (725)
|||+|+..|+ .+++++|+++|++++. ++..|.|||++|+..++.+++.
T Consensus 143 pL~~A~~~~~----~~~v~~Ll~~ga~~~~----------------------------~~~~g~t~l~~A~~~~~~~~l~ 190 (222)
T 3ehr_A 143 ALHAAAWKGY----ADIVQLLLAKGARTDL----------------------------RNIEKKLAFDMATNAACASLLK 190 (222)
T ss_dssp HHHHHHHHTC----HHHHHHHHHHTCCSCC----------------------------CCTTSCCHHHHCCSHHHHHHHC
T ss_pred HHHHHHHcCC----HHHHHHHHHcCCCCcc----------------------------ccCCCCCHHHHhcchhHHHHHH
Confidence 9999999754 5599999999999984 5667778899999999999988
Q ss_pred CCCccc
Q 004887 254 SLPDIK 259 (725)
Q Consensus 254 ~Lpdi~ 259 (725)
.|.+.+
T Consensus 191 ~l~~~~ 196 (222)
T 3ehr_A 191 KKQGTD 196 (222)
T ss_dssp ------
T ss_pred HHhccc
Confidence 776543
No 94
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.79 E-value=2.8e-20 Score=186.60 Aligned_cols=136 Identities=20% Similarity=0.153 Sum_probs=105.5
Q ss_pred CCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHH
Q 004887 38 NDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVK 117 (725)
Q Consensus 38 ~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk 117 (725)
.|.||||+|+..|+.+++ .+++..+.+.+..+..|+||||+|+..|+.++|+
T Consensus 72 ~g~t~L~~A~~~g~~~~v----------------------------~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 123 (222)
T 3ehr_A 72 SIDNPLHEAAKRGNLSWL----------------------------RECLDNRVGVNGLDKAGSTALYWACHGGHKDIVE 123 (222)
T ss_dssp EESCHHHHHHHHTCHHHH----------------------------HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred ccccccccccccCcHHHH----------------------------HHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHH
Confidence 789999999987665543 2444455566666788999999999999999999
Q ss_pred HHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHC
Q 004887 118 LILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKN 197 (725)
Q Consensus 118 ~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~ 197 (725)
+||+..|+++|.+ +..|+||||+|+..|+ .++|++||++|++++.+|..|+||||+|+.. +..++++.|++.
T Consensus 124 ~Ll~~~g~~~~~~-d~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~----~~~~~l~~l~~~ 195 (222)
T 3ehr_A 124 MLFTQPNIELNQQ-NKLGDTALHAAAWKGY---ADIVQLLLAKGARTDLRNIEKKLAFDMATNA----ACASLLKKKQGT 195 (222)
T ss_dssp HHTTSTTCCCCCC-CTTSCCHHHHHHHHTC---HHHHHHHHHHTCCSCCCCTTSCCHHHHCCSH----HHHHHHC-----
T ss_pred HHHcCCCCCcccc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCccccCCCCCHHHHhcch----hHHHHHHHHhcc
Confidence 9999879999999 9999999999999999 9999999999999999999999999999985 677799999999
Q ss_pred CCCCCCcccccc
Q 004887 198 GGSVSFDELQVS 209 (725)
Q Consensus 198 Gadvn~~d~~g~ 209 (725)
|++.+..|..+.
T Consensus 196 ~~~~~~~~~~~~ 207 (222)
T 3ehr_A 196 DAVRTLSNAEDY 207 (222)
T ss_dssp ------------
T ss_pred chhhhccchhhh
Confidence 999887665544
No 95
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.79 E-value=1.4e-20 Score=193.09 Aligned_cols=142 Identities=20% Similarity=0.153 Sum_probs=125.8
Q ss_pred hhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcC-CCCC
Q 004887 94 KKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTD-AHGN 172 (725)
Q Consensus 94 ~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D-~~G~ 172 (725)
...+.+|.||||+|+..|+.++|++||+ |+++|.+ +..|+||||+||..|+ .++|++||++|++++.+| ..|+
T Consensus 39 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~g~ 112 (244)
T 3ui2_A 39 ADVVSEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFVAGLGS---DKCVRLLAEAGADLDHRDMRGGL 112 (244)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCB-CTTSCBHHHHHHHHTC---HHHHHHHHHTTCCTTCCCSSSCC
T ss_pred cccccCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCc-CCCCCCHHHHHHHCCC---HHHHHHHHHcCCCCCcCCCCCCC
Confidence 3445679999999999999999999998 8999999 9999999999999999 999999999999999998 8899
Q ss_pred cHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCccccccccccccccCCCCCCCCCCCccccccCCCCcccccccCCCcCcc
Q 004887 173 RPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPID 252 (725)
Q Consensus 173 TPLhlA~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~~G~TpL~~A~e~g~~~vd 252 (725)
||||+|+..|+ .+++++|+++|++++.+|..|.||++.+.. ......+.|||++|+..|+.+++
T Consensus 113 t~L~~A~~~g~----~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~------------~~~~~~~~~~l~~a~~~g~~~iv 176 (244)
T 3ui2_A 113 TALHMAAGYVR----PEVVEALVELGADIEVEDERGLTALELARE------------ILKTTPKGNPMQFGRRIGLEKVI 176 (244)
T ss_dssp CHHHHHHHTTC----HHHHHHHHHTTCCTTCCCTTCCCHHHHHHH------------HHTTCCCSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCC----HHHHHHHHHCCCCCCCCCCCCCcHHHHHHH------------HHhccCCCCHHHHHHHcChHHHH
Confidence 99999999855 459999999999999999999999877643 12335678999999999999987
Q ss_pred CCCCc
Q 004887 253 PSLPD 257 (725)
Q Consensus 253 ~~Lpd 257 (725)
..|.+
T Consensus 177 ~~L~~ 181 (244)
T 3ui2_A 177 NVLEG 181 (244)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76653
No 96
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.78 E-value=4.7e-20 Score=180.03 Aligned_cols=111 Identities=23% Similarity=0.227 Sum_probs=99.5
Q ss_pred hhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcC-CCCC
Q 004887 94 KKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTD-AHGN 172 (725)
Q Consensus 94 ~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D-~~G~ 172 (725)
...+.+|.||||+|+..|+.+++++||+ |+++|.+ +..|+||||+|+..|+ .++|++|+++|++++.+| ..|+
T Consensus 38 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~~g~ 111 (183)
T 3deo_A 38 ADVVSEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFVAGLGS---DKCVRLLAEAGADLDHRDMRGGL 111 (183)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCSSSSC
T ss_pred ccCCCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCcCCCCCCC
Confidence 3445789999999999999999999998 8999999 9999999999999999 999999999999999998 8999
Q ss_pred cHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCccccccccccc
Q 004887 173 RPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLR 214 (725)
Q Consensus 173 TPLhlA~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~ 214 (725)
||||+|+..|+ .+++++|+++|++++.+|..|.||++.
T Consensus 112 tpL~~A~~~~~----~~~v~~Ll~~ga~~~~~d~~g~tpl~~ 149 (183)
T 3deo_A 112 TALHMAAGYVR----PEVVEALVELGADIEVEDERGLTALEL 149 (183)
T ss_dssp CHHHHHHHTTC----HHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred CHHHHHHhcCc----HHHHHHHHHcCCCCcCCCCCCCCHHHH
Confidence 99999999854 559999999999999766666655544
No 97
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.78 E-value=7e-20 Score=164.59 Aligned_cols=107 Identities=35% Similarity=0.361 Sum_probs=99.6
Q ss_pred hhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHH
Q 004887 96 IVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPF 175 (725)
Q Consensus 96 ~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPL 175 (725)
.+.+|+||||+|+..|+.+++++||+. |+++|.+ +..|.||||+|+..|+ .+++++|++.|++++.+|..|+|||
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-d~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~d~~g~tpl 79 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNAR-SKDGNTPLHLAAKNGH---AEIVKLLLAKGADVNARSKDGNTPE 79 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTT-TCCSSCC-CSSSCCTTHHHHTTTC---HHHHHHHTTTTCCTTCCCTTCCCTT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCc---HHHHHHHHHcCCCCcccCCCCCCHH
Confidence 467899999999999999999999999 9999999 9999999999999999 9999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHCCCCCCCcccccccc
Q 004887 176 DVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSV 211 (725)
Q Consensus 176 hlA~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp 211 (725)
|+|+..+ ..+++++|+++|++++.++..+.+|
T Consensus 80 ~~A~~~~----~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 80 HLAKKNG----HHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp HHHHTTT----CHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred HHHHHCC----CHHHHHHHHHcCCCCCcCCcccccc
Confidence 9999974 4559999999999999998888887
No 98
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.77 E-value=4.9e-19 Score=161.17 Aligned_cols=110 Identities=24% Similarity=0.263 Sum_probs=96.2
Q ss_pred CCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHH
Q 004887 38 NDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVK 117 (725)
Q Consensus 38 ~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk 117 (725)
.|.||||+|+..++.+++ .+++..+.+.+..+..|+||||+|+..|+.++++
T Consensus 6 ~~~~~l~~A~~~~~~~~v----------------------------~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~ 57 (123)
T 3aaa_C 6 MCDKEFMWALKNGDLDEV----------------------------KDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILE 57 (123)
T ss_dssp -CHHHHHHHHHTTCHHHH----------------------------HHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHcCCHHHH----------------------------HHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHH
Confidence 789999999977665543 2344445555666778999999999999999999
Q ss_pred HHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHh
Q 004887 118 LILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVV 180 (725)
Q Consensus 118 ~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA~~ 180 (725)
+||+. |+++|.+ |..|+||||+|+..|+ .++|++|+++|++++.+|..|+||||+|..
T Consensus 58 ~Ll~~-g~~~~~~-d~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 58 FLLLK-GADINAP-DKHHITPLLSAVYEGH---VSCVKLLLSKGADKTVKGPDGLTAFEATDN 115 (123)
T ss_dssp HHHTT-TCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred HHHHc-CCCCCcC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence 99999 9999999 9999999999999999 999999999999999999999999999944
No 99
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.77 E-value=5e-19 Score=187.96 Aligned_cols=96 Identities=23% Similarity=0.225 Sum_probs=82.7
Q ss_pred hhcCCChHHHHHHHc---CCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCC
Q 004887 96 IVLQHRTPLMVAAEY---GSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGN 172 (725)
Q Consensus 96 ~~~~G~TPLh~Aa~~---G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~ 172 (725)
.+..|.||||+|+.. |+.++|++||++ |++||.+ |.+|+||||+|+..|+ .++|++||++|||++.+|..|+
T Consensus 186 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadvn~~-d~~G~TpLh~A~~~g~---~~~v~~Ll~~gad~~~~d~~G~ 260 (301)
T 2b0o_E 186 AQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAK-AADGNTALHYAALYNQ---PDCLKLLLKGRALVGTVNEAGE 260 (301)
T ss_dssp SCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCCSCCCTTSC
T ss_pred cCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCC
Confidence 356788999999987 889999999998 9999988 8889999999999998 8999999999999999999999
Q ss_pred cHHHHHHhCCCCCCHHHHHHHHHHCCCC
Q 004887 173 RPFDVIVVHPNVPDSRVSLEDLLKNGGS 200 (725)
Q Consensus 173 TPLhlA~~~g~~e~~~~ivelLL~~Gad 200 (725)
||||+|+..|+ .+++++|+++|++
T Consensus 261 TpL~~A~~~~~----~~iv~~Ll~~ga~ 284 (301)
T 2b0o_E 261 TALDIARKKHH----KECEELLEQAQAG 284 (301)
T ss_dssp CHHHHHHHHTC----HHHHHHHHHHHHH
T ss_pred CHHHHHHHcCC----HHHHHHHHHhcCC
Confidence 99999998744 4589999887654
No 100
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.75 E-value=3.9e-20 Score=202.89 Aligned_cols=105 Identities=12% Similarity=0.000 Sum_probs=54.5
Q ss_pred ChHHHHHHHcCCHHHHHHHHhcCCCCccc--ccCCCCchHHHHHH-hCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHH
Q 004887 101 RTPLMVAAEYGSVDVVKLILSLTKADVNL--TCGLDKSTALHCAA-SGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDV 177 (725)
Q Consensus 101 ~TPLh~Aa~~G~~eiVk~LLe~~GadVN~--~~d~~G~TpLH~Aa-~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhl 177 (725)
.||||+|+..|+.++|++||++ |++++. . +.+|.||||+|+ ..|+ .++|++|++.|++ |.||||+
T Consensus 164 ~TpLh~Aa~~G~~eiv~~Ll~~-ga~~~~~~~-d~~g~TpL~~Aa~~~G~---~eiv~~Ll~~ga~-------~~taL~~ 231 (376)
T 2aja_A 164 YHAFRLAAENGHLHVLNRLCEL-APTEATAMI-QAENYYAFRWAAVGRGH---HNVINFLLDCPVM-------LAYAEIH 231 (376)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHS-CGGGHHHHH-HHHHHHHHHHHHSTTCC---HHHHHHHTTSHHH-------HHHHHHC
T ss_pred CCHHHHHHHCCCHHHHHHHHHc-CCccchhcc-CCCCCCHHHHHHHHCCC---HHHHHHHHhCCCc-------cchHHHH
Confidence 4455555555555555555554 444443 3 444445555555 5554 4555555544421 4455555
Q ss_pred HHhCCCCCCHHHHHHHHHHCCCCCCCccccccccccccccCCCCCCCCCCCccccccCCCCcccccccCCCcCccC
Q 004887 178 IVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPIDP 253 (725)
Q Consensus 178 A~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~~G~TpL~~A~e~g~~~vd~ 253 (725)
|+..|+.+ ++++|+++|++++. . +++++.|+.+|+++++.
T Consensus 232 Aa~~g~~e----vv~lL~~~ga~~~~----------------------------~----~~~l~~A~~~g~~~vv~ 271 (376)
T 2aja_A 232 EFEYGEKY----VNPFIARHVNRLKE----------------------------M----HDAFKLSNPDGVFDLVT 271 (376)
T ss_dssp TTTTTTTT----HHHHHHHHHHHHHH----------------------------H----HTTTTTTSSSSCCCCSS
T ss_pred HHHCCCHH----HHHHHHhcCccccc----------------------------c----cHHHHHHHHCCChhhhc
Confidence 55444433 45555544444331 1 24788899999999763
No 101
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.74 E-value=2.9e-18 Score=167.28 Aligned_cols=113 Identities=23% Similarity=0.138 Sum_probs=97.2
Q ss_pred CCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHH
Q 004887 38 NDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVK 117 (725)
Q Consensus 38 ~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk 117 (725)
.|+||||+|+..|+.+++. +++. +.+.+..+..|+||||+|+..|+.++++
T Consensus 43 ~g~t~L~~A~~~g~~~~v~----------------------------~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~ 93 (183)
T 3deo_A 43 EYETPWWTAARKADEQALS----------------------------QLLE-DRDVDAVDENGRTALLFVAGLGSDKCVR 93 (183)
T ss_dssp HHHHHHHHHHHTTCHHHHH----------------------------HHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHH----------------------------HHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence 7899999999876655432 2222 3345556778999999999999999999
Q ss_pred HHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHhCCC
Q 004887 118 LILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPN 183 (725)
Q Consensus 118 ~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA~~~g~ 183 (725)
+||++ |+++|.+.+..|+||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+..++
T Consensus 94 ~Ll~~-ga~~~~~~~~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~ 155 (183)
T 3deo_A 94 LLAEA-GADLDHRDMRGGLTALHMAAGYVR---PEVVEALVELGADIEVEDERGLTALELAREILK 155 (183)
T ss_dssp HHHHT-TCCTTCCCSSSSCCHHHHHHHTTC---HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHH
T ss_pred HHHHc-CCCCCcCCCCCCCCHHHHHHhcCc---HHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhcc
Confidence 99999 999999933899999999999999 999999999999999999999999999997543
No 102
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.73 E-value=6e-18 Score=191.52 Aligned_cols=104 Identities=23% Similarity=0.206 Sum_probs=89.4
Q ss_pred hcCCChHHHHHHH---cCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCc
Q 004887 97 VLQHRTPLMVAAE---YGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNR 173 (725)
Q Consensus 97 ~~~G~TPLh~Aa~---~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~T 173 (725)
+..|.||||+|+. .|+.++|++||++ |+|+|.+ |.+|+||||+||..|+ .++|++||++|||++.+|.+|+|
T Consensus 168 ~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~-ga~vn~~-d~~g~TpLh~A~~~g~---~~~v~~Ll~~ga~~~~~d~~g~t 242 (497)
T 3lvq_E 168 QAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAK-AADGNTALHYAALYNQ---PDCLKLLLKGRALVGTVNEAGET 242 (497)
T ss_dssp CCSCBCHHHHHHHTCCTTTHHHHHHHHHH-SCCTTCC-CSSSCCHHHHHTTTTC---HHHHHHHHHTCCCCSCCCTTCCC
T ss_pred ccccchHHHHHHHhcccccHHHHHHHHHc-CCCCCcc-CCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCC
Confidence 5689999999977 8999999999999 9999999 9999999999999999 99999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHCCCCCCCcccccc
Q 004887 174 PFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVS 209 (725)
Q Consensus 174 PLhlA~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~ 209 (725)
|||+|+..|+ .+++++|+++|++++..+.+..
T Consensus 243 pl~~A~~~~~----~~~~~~Ll~~ga~~~~~~~h~~ 274 (497)
T 3lvq_E 243 ALDIARKKHH----KECEELLEQAQAGTFAFPLHVD 274 (497)
T ss_dssp HHHHHHHTTC----HHHHHHHHHTCC----------
T ss_pred HHHHHHHcCC----HHHHHHHHHhCCCCCCCcceee
Confidence 9999999854 5599999999999987444433
No 103
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.72 E-value=3.4e-18 Score=181.57 Aligned_cols=134 Identities=19% Similarity=0.049 Sum_probs=110.0
Q ss_pred CCcHHHHH--------HHHHHHCCCCccC------cCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCC
Q 004887 12 KSSPLKIS--------ISIFQKHTQNVFL------VDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPS 77 (725)
Q Consensus 12 G~TPLhiA--------vklLL~~GADVN~------~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~ 77 (725)
+.++||.| ++.|++.|+|++. .+. .|+||||+|+..+. .
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~--~g~t~Lh~A~~~~~-------------------------~ 203 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQA--PEELVLHLAVKVAN-------------------------Q 203 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCS--CEECHHHHHHHTCC-------------------------T
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCC--CCccHHHHHHHhcc-------------------------c
Confidence 34679999 7788999999998 566 99999999996421 1
Q ss_pred ccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHH
Q 004887 78 LQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLL 157 (725)
Q Consensus 78 ~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklL 157 (725)
+....+.+++..+.+++..+..|+||||+|+..|+.++|++||++ |+|++.+ |.+|.||||+|+..|+ .+++++|
T Consensus 204 ~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~-d~~G~TpL~~A~~~~~---~~iv~~L 278 (301)
T 2b0o_E 204 ASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG-RALVGTV-NEAGETALDIARKKHH---KECEELL 278 (301)
T ss_dssp TTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCCSCC-CTTSCCHHHHHHHHTC---HHHHHHH
T ss_pred CcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHH
Confidence 224455567777777887889999999999999999999999999 9999999 9999999999999999 9999999
Q ss_pred HHCCCCCCCcCCCCCcHHHHHHhCCC
Q 004887 158 LFAGADSNLTDAHGNRPFDVIVVHPN 183 (725)
Q Consensus 158 L~~GADin~~D~~G~TPLhlA~~~g~ 183 (725)
+++|++ .|.||||+|+..|+
T Consensus 279 l~~ga~------~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 279 EQAQAG------TFAFPLHVDYSWVI 298 (301)
T ss_dssp HHHHHH------TTSSCCC-------
T ss_pred HHhcCC------CCCChhHHHHhcCC
Confidence 999987 58999999998765
No 104
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.71 E-value=1.6e-17 Score=170.13 Aligned_cols=131 Identities=21% Similarity=0.084 Sum_probs=107.5
Q ss_pred CCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHH
Q 004887 38 NDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVK 117 (725)
Q Consensus 38 ~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk 117 (725)
+|+||||+|+..|+.+++.. ++. +.+.+..+..|+||||+|+..|+.++|+
T Consensus 44 ~g~t~L~~A~~~g~~~~v~~----------------------------Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~ 94 (244)
T 3ui2_A 44 EYETPWWTAARKADEQALSQ----------------------------LLE-DRDVDAVDENGRTALLFVAGLGSDKCVR 94 (244)
T ss_dssp HHHHHHHHHHTTTCHHHHHH----------------------------TTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHH----------------------------HHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHH
Confidence 78999999997766554322 112 3344556678999999999999999999
Q ss_pred HHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCC------------C
Q 004887 118 LILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNV------------P 185 (725)
Q Consensus 118 ~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA~~~g~~------------e 185 (725)
+||++ |+++|.+.+..|+||||+|+..|+ .++|++||++|++++.+|..|+||||+|+..++. .
T Consensus 95 ~Ll~~-ga~~~~~~~~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~ 170 (244)
T 3ui2_A 95 LLAEA-GADLDHRDMRGGLTALHMAAGYVR---PEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRI 170 (244)
T ss_dssp HHHHT-TCCTTCCCSSSCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHH
T ss_pred HHHHc-CCCCCcCCCCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHc
Confidence 99999 999999933889999999999999 9999999999999999999999999999843221 2
Q ss_pred CHHHHHHHHHHCCCCC
Q 004887 186 DSRVSLEDLLKNGGSV 201 (725)
Q Consensus 186 ~~~~ivelLL~~Gadv 201 (725)
+..+++++|++++.+.
T Consensus 171 g~~~iv~~L~~~~~~~ 186 (244)
T 3ui2_A 171 GLEKVINVLEGQVFEY 186 (244)
T ss_dssp HHHHHHHHHHHHHEEE
T ss_pred ChHHHHHHHHHhcccc
Confidence 4567899999876543
No 105
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.71 E-value=3.6e-17 Score=171.54 Aligned_cols=96 Identities=21% Similarity=0.238 Sum_probs=90.3
Q ss_pred hcCCChHHHHHHHc---CCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCc
Q 004887 97 VLQHRTPLMVAAEY---GSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNR 173 (725)
Q Consensus 97 ~~~G~TPLh~Aa~~---G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~T 173 (725)
+..|+||||+|+.. |+.+++++||++ |+++|.+ |..|+||||+|+..|+ .++|++||++|||++.+|.+|.|
T Consensus 166 ~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~in~~-d~~g~TpLh~A~~~g~---~~~v~~Ll~~gad~~~~d~~g~t 240 (278)
T 1dcq_A 166 HEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQ-TGKGSTALHYCCLTDN---AECLKLLLRGKASIEIANESGET 240 (278)
T ss_dssp SSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCC
T ss_pred ccCCCCcchHHHHhcccchHHHHHHHHHC-CCCcccc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCccCCCCC
Confidence 46799999999999 899999999999 9999999 9999999999999999 99999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHCCCCC
Q 004887 174 PFDVIVVHPNVPDSRVSLEDLLKNGGSV 201 (725)
Q Consensus 174 PLhlA~~~g~~e~~~~ivelLL~~Gadv 201 (725)
|||+|+..|+ .+++++|+++|++.
T Consensus 241 pL~~A~~~~~----~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 241 PLDIAKRLKH----EHCEELLTQALSGR 264 (278)
T ss_dssp HHHHHHHTTC----HHHHHHHHHHHTTC
T ss_pred HHHHHHHcCC----HHHHHHHHHcCCCC
Confidence 9999999854 55999999998864
No 106
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.70 E-value=2.5e-17 Score=180.17 Aligned_cols=111 Identities=21% Similarity=0.177 Sum_probs=95.2
Q ss_pred hhHHHHHHhhCCchhhh--cCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHH
Q 004887 81 NMIGLWYSFQRLSKKIV--LQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLL 158 (725)
Q Consensus 81 ~~~~L~~a~~~g~~~~~--~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL 158 (725)
..+.+++..+.+.+..+ ..|.||||+|+..|+.++|++||++ |+++|.+ |..|+||||+|+..|+ .++|++||
T Consensus 214 ~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~-Gadvn~~-d~~G~TpLh~A~~~g~---~~~v~~LL 288 (368)
T 3jue_A 214 PTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQN-GANVNQA-DSAGRGPLHHATILGH---TGLACLFL 288 (368)
T ss_dssp HHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHH
T ss_pred HHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHHHcCc---HHHHHHHH
Confidence 33445555555666555 7899999999999999999999999 9999998 9999999999999999 99999999
Q ss_pred HCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCCC
Q 004887 159 FAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGS 200 (725)
Q Consensus 159 ~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Gad 200 (725)
++|||++.+|.+|.||||+|+..++ .+++++|+..+..
T Consensus 289 ~~Gad~~~~d~~G~TpL~~A~~~g~----~~iv~lLl~~~~~ 326 (368)
T 3jue_A 289 KRGADLGARDSEGRDPLTIAMETAN----ADIVTLLRLAKMR 326 (368)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHHHHC-
T ss_pred HCcCCCCCcCCCCCCHHHHHHHCCC----HHHHHHHHHcCCC
Confidence 9999999999999999999999754 5599999987643
No 107
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.70 E-value=8e-18 Score=176.57 Aligned_cols=123 Identities=17% Similarity=0.151 Sum_probs=108.2
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCCCccccc-----CCCCchHHHHHHhC---CCCCHHHHHHHHHHCCCCCCCcCCCC
Q 004887 100 HRTPLMVAAEYGSVDVVKLILSLTKADVNLTC-----GLDKSTALHCAASG---GSVNAVDVVKLLLFAGADSNLTDAHG 171 (725)
Q Consensus 100 G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~-----d~~G~TpLH~Aa~~---G~~~~~eiVklLL~~GADin~~D~~G 171 (725)
..++|+.|+..|+.+.++.+++. |++++... +..|.||||+|+.. |+ .++|++||++|+++|.+|..|
T Consensus 130 ~l~~l~~a~~~~d~~~~~~ll~~-g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~---~~~v~~Ll~~ga~in~~d~~g 205 (278)
T 1dcq_A 130 KLHSLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTS---LHIVDFLVQNSGNLDKQTGKG 205 (278)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTT---HHHHHHHHHHCSCTTCCCTTC
T ss_pred hhhhhhhHhhhcccHHHHHHHHh-hcchhhhccccccccCCCCcchHHHHhcccch---HHHHHHHHHCCCCccccCCCC
Confidence 45799999999999999999999 99955331 78899999999999 67 999999999999999999999
Q ss_pred CcHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCccccccccccccccCCCCCCCCCCCccccccCCCCcccccccCCCcCc
Q 004887 172 NRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPI 251 (725)
Q Consensus 172 ~TPLhlA~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~~G~TpL~~A~e~g~~~v 251 (725)
+||||+|+..|+ .+++++|+++|++++. +|..|.||||+|++.|+.++
T Consensus 206 ~TpLh~A~~~g~----~~~v~~Ll~~gad~~~----------------------------~d~~g~tpL~~A~~~~~~~~ 253 (278)
T 1dcq_A 206 STALHYCCLTDN----AECLKLLLRGKASIEI----------------------------ANESGETPLDIAKRLKHEHC 253 (278)
T ss_dssp CCHHHHHHHTTC----HHHHHHHHHTTCCTTC----------------------------CCTTSCCHHHHHHHTTCHHH
T ss_pred CCHHHHHHHcCC----HHHHHHHHHcCCCCCC----------------------------ccCCCCCHHHHHHHcCCHHH
Confidence 999999999855 4599999999999984 56677788999999999999
Q ss_pred cCCCCcc
Q 004887 252 DPSLPDI 258 (725)
Q Consensus 252 d~~Lpdi 258 (725)
+..|...
T Consensus 254 v~~Ll~~ 260 (278)
T 1dcq_A 254 EELLTQA 260 (278)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 8766543
No 108
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.70 E-value=7.4e-18 Score=184.33 Aligned_cols=121 Identities=23% Similarity=0.187 Sum_probs=110.4
Q ss_pred CCChHHHHHHHc-CCHHHHHHHHhcCCCCcccccC--CCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHH
Q 004887 99 QHRTPLMVAAEY-GSVDVVKLILSLTKADVNLTCG--LDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPF 175 (725)
Q Consensus 99 ~G~TPLh~Aa~~-G~~eiVk~LLe~~GadVN~~~d--~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPL 175 (725)
.+.|+||.|+.. |++++|++||+. |+|+|.. + .+|.||||+|+..|+ .++|++||++|+|+|.+|..|+|||
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~-Gadvn~~-~~~~~g~TpLh~Aa~~g~---~~iv~~LL~~Gadvn~~d~~G~TpL 272 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAH-GADVNWV-NGGQDNATPLIQATAANS---LLACEFLLQNGANVNQADSAGRGPL 272 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHT-TCCTTCC-CTTTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHc-CCCCCcc-ccccCCCCHHHHHHHCCC---HHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 456899999999 999999999999 9999998 6 899999999999999 9999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHCCCCCCCccccccccccccccCCCCCCCCCCCccccccCCCCcccccccCCCcCccCCC
Q 004887 176 DVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPIDPSL 255 (725)
Q Consensus 176 hlA~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~~G~TpL~~A~e~g~~~vd~~L 255 (725)
|+|+..|+ .+++++||++|++++. +|..|.||||+|++.++.+++..|
T Consensus 273 h~A~~~g~----~~~v~~LL~~Gad~~~----------------------------~d~~G~TpL~~A~~~g~~~iv~lL 320 (368)
T 3jue_A 273 HHATILGH----TGLACLFLKRGADLGA----------------------------RDSEGRDPLTIAMETANADIVTLL 320 (368)
T ss_dssp HHHHHHTC----HHHHHHHHHTTCCTTC----------------------------CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHcCc----HHHHHHHHHCcCCCCC----------------------------cCCCCCCHHHHHHHCCCHHHHHHH
Confidence 99999854 5599999999999984 566777889999999999997655
Q ss_pred C
Q 004887 256 P 256 (725)
Q Consensus 256 p 256 (725)
.
T Consensus 321 l 321 (368)
T 3jue_A 321 R 321 (368)
T ss_dssp H
T ss_pred H
Confidence 4
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.69 E-value=1.2e-17 Score=189.07 Aligned_cols=128 Identities=16% Similarity=0.153 Sum_probs=110.9
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCCCcccc-----cCCCCchHHHHHHh---CCCCCHHHHHHHHHHCCCCCCCcCCCC
Q 004887 100 HRTPLMVAAEYGSVDVVKLILSLTKADVNLT-----CGLDKSTALHCAAS---GGSVNAVDVVKLLLFAGADSNLTDAHG 171 (725)
Q Consensus 100 G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~-----~d~~G~TpLH~Aa~---~G~~~~~eiVklLL~~GADin~~D~~G 171 (725)
..+.||.|+..|+.++|+.||+. |+|+|.. .+..|.||||+||. .|+ .++|++||++|||+|.+|.+|
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~-g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~---~~~v~~Ll~~ga~vn~~d~~g 207 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQAS---LPLVDFIIQNGGHLDAKAADG 207 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHT-TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTT---HHHHHHHHHHSCCTTCCCSSS
T ss_pred cHHHHHHHHhccCHHHHHHHHhh-cccccCCCCCcccccccchHHHHHHHhccccc---HHHHHHHHHcCCCCCccCCCC
Confidence 34789999999999999999999 9999865 26789999999976 778 999999999999999999999
Q ss_pred CcHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCccccccccccccccCCCCCCCCCCCccccccCCCCcccccccCCCcCc
Q 004887 172 NRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPI 251 (725)
Q Consensus 172 ~TPLhlA~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~~G~TpL~~A~e~g~~~v 251 (725)
+||||+|+..|+ .+++++||++|++++. +|..|.||||+|++.|+.++
T Consensus 208 ~TpLh~A~~~g~----~~~v~~Ll~~ga~~~~----------------------------~d~~g~tpl~~A~~~~~~~~ 255 (497)
T 3lvq_E 208 NTALHYAALYNQ----PDCLKLLLKGRALVGT----------------------------VNEAGETALDIARKKHHKEC 255 (497)
T ss_dssp CCHHHHHTTTTC----HHHHHHHHHTCCCCSC----------------------------CCTTCCCHHHHHHHTTCHHH
T ss_pred CcHHHHHHHcCC----HHHHHHHHHcCCCCCC----------------------------cCCCCCCHHHHHHHcCCHHH
Confidence 999999999855 4599999999999984 56777899999999999999
Q ss_pred cCCCCccccccc
Q 004887 252 DPSLPDIKDSIY 263 (725)
Q Consensus 252 d~~Lpdi~~~iy 263 (725)
+..|.+.+..+.
T Consensus 256 ~~~Ll~~ga~~~ 267 (497)
T 3lvq_E 256 EELLEQAQAGTF 267 (497)
T ss_dssp HHHHHHTCC---
T ss_pred HHHHHHhCCCCC
Confidence 887776554444
No 110
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.69 E-value=6.2e-19 Score=193.35 Aligned_cols=154 Identities=15% Similarity=0.085 Sum_probs=116.4
Q ss_pred CCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHH
Q 004887 38 NDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVK 117 (725)
Q Consensus 38 ~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk 117 (725)
+++||||+|+..|+.+++...... .+. .......+..|.||||+|+.+|+.++|+
T Consensus 91 ~~~T~Lh~Aa~~G~~e~v~~Ll~~-------ga~------------------~~~~~~~~~~~~tpL~~Aa~~G~~eiv~ 145 (376)
T 2aja_A 91 KSEVICFVAAITGCSSALDTLCLL-------LTS------------------DEIVKVIQAENYQAFRLAAENGHLHVLN 145 (376)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHTTC---------C------------------CSSCC--CHHHHHHHHHHHHTTCHHHHH
T ss_pred CcCCHHHHHHHcCCHHHHHHHHHc-------CCc------------------HHHHHHhccCCCCHHHHHHHcCCHHHHH
Confidence 557999999988887775432211 110 0001122335678999999999999999
Q ss_pred HHHhcCCCC---cccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCC--cCCCCCcHHHHHH-hCCCCCCHHHHH
Q 004887 118 LILSLTKAD---VNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNL--TDAHGNRPFDVIV-VHPNVPDSRVSL 191 (725)
Q Consensus 118 ~LLe~~Gad---VN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~--~D~~G~TPLhlA~-~~g~~e~~~~iv 191 (725)
+|+++ |+| ++.. +.+ .||||+||..|+ .++|++|+++|++++. +|..|.||||+|+ ..|+. +++
T Consensus 146 ~Ll~~-gad~~~~~i~-~~~-~TpLh~Aa~~G~---~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~----eiv 215 (376)
T 2aja_A 146 RLCEL-APTEIMAMIQ-AEN-YHAFRLAAENGH---LHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHH----NVI 215 (376)
T ss_dssp HHHHS-CTTTHHHHHS-HHH-HHHHHHHHHTTC---HHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCH----HHH
T ss_pred HHHhC-CCCccccccC-CCC-CCHHHHHHHCCC---HHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCH----HHH
Confidence 99999 875 2322 223 999999999999 9999999999999988 8999999999999 98554 599
Q ss_pred HHHHHCCCCCCCccccccccccccccCCCCCCCCCCCccccccCCCCcccccccCCCcCccCCCCccccc
Q 004887 192 EDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPIDPSLPDIKDS 261 (725)
Q Consensus 192 elLL~~Gadvn~~d~~g~Tp~~~ass~ls~s~~~~~~~~~~~~~G~TpL~~A~e~g~~~vd~~Lpdi~~~ 261 (725)
++|+++|++ |.|||+.|+++|+.+|+..|.+.+..
T Consensus 216 ~~Ll~~ga~-----------------------------------~~taL~~Aa~~g~~evv~lL~~~ga~ 250 (376)
T 2aja_A 216 NFLLDCPVM-----------------------------------LAYAEIHEFEYGEKYVNPFIARHVNR 250 (376)
T ss_dssp HHHTTSHHH-----------------------------------HHHHHHCTTTTTTTTHHHHHHHHHHH
T ss_pred HHHHhCCCc-----------------------------------cchHHHHHHHCCCHHHHHHHHhcCcc
Confidence 999986531 45889999999999998877654433
No 111
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.66 E-value=9.5e-17 Score=143.98 Aligned_cols=92 Identities=36% Similarity=0.425 Sum_probs=83.2
Q ss_pred hhhhcCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCc
Q 004887 94 KKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNR 173 (725)
Q Consensus 94 ~~~~~~G~TPLh~Aa~~G~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~T 173 (725)
...+.+|.|+||+|+..|+.+++++||+. |+++|.+ |..|+||||+||..|+ .++|++||++|++++.+|..|+|
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~-d~~g~tpLh~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~t 92 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMAN-GADVAAK-DKNGSTPLHLAARNGH---LEVVKLLLEAGADVXAQDKFGKT 92 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCC
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHHc-CCCCCcc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccccccCCCc
Confidence 34567899999999999999999999999 9999999 9999999999999999 99999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHH
Q 004887 174 PFDVIVVHPNVPDSRVSLEDL 194 (725)
Q Consensus 174 PLhlA~~~g~~e~~~~ivelL 194 (725)
|||+|+..|+ .+++++|
T Consensus 93 pl~~A~~~~~----~~~~~~L 109 (110)
T 2zgd_A 93 AFDISIDNGN----EDLAEIL 109 (110)
T ss_dssp HHHHHHHHTC----HHHHHHH
T ss_pred HHHHHHHcCC----HHHHHHh
Confidence 9999999754 4588776
No 112
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.65 E-value=3.5e-16 Score=135.45 Aligned_cols=93 Identities=41% Similarity=0.412 Sum_probs=80.1
Q ss_pred CCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcCCHHHHH
Q 004887 38 NDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVK 117 (725)
Q Consensus 38 ~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G~~eiVk 117 (725)
+|+||||+|+..++.++. .+++..+.+.+..+..|.||||+|+..|+.++++
T Consensus 1 ~g~t~L~~A~~~~~~~~v----------------------------~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~ 52 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVV----------------------------KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 52 (93)
T ss_dssp --CCHHHHHHHHTCHHHH----------------------------HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred CCCcHHHHHHHcCCHHHH----------------------------HHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHH
Confidence 489999999977665443 2444555566667789999999999999999999
Q ss_pred HHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCC
Q 004887 118 LILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGAD 163 (725)
Q Consensus 118 ~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAD 163 (725)
+|+++ |++++.+ |.+|+||||+|+..|+ .+++++|+++||+
T Consensus 53 ~Ll~~-ga~~~~~-d~~g~t~l~~A~~~~~---~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 53 LLLEA-GADVNAK-DKNGRTPLHLAARNGH---LEVVKLLLEAGAY 93 (93)
T ss_dssp HHHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCC
T ss_pred HHHHc-CCCCCcc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCC
Confidence 99999 9999999 9999999999999999 9999999999986
No 113
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.64 E-value=9e-17 Score=144.16 Aligned_cols=109 Identities=28% Similarity=0.195 Sum_probs=90.6
Q ss_pred CcCCCCCCChHHHHHHHcCChhhhcCchhhhhcccCCCCCCCCCCCccchhHHHHHHhhCCchhhhcCCChHHHHHHHcC
Q 004887 32 LVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMIGLWYSFQRLSKKIVLQHRTPLMVAAEYG 111 (725)
Q Consensus 32 ~~D~D~~G~TpLHlAa~~g~~ei~ga~~~l~~~lL~~aa~~~~~~~~~~~~~~L~~a~~~g~~~~~~~G~TPLh~Aa~~G 111 (725)
.+|. +|+||||+|+..++.+++. +++..+.+.+..+..|.||||+|+..|
T Consensus 4 ~~d~--~g~t~L~~A~~~~~~~~~~----------------------------~Ll~~g~~~~~~d~~g~t~L~~A~~~~ 53 (115)
T 2l6b_A 4 WGSK--DGNTPLHNAAKNGHAEEVK----------------------------KLLSKGADVNARSKDGNTPLHLAAKNG 53 (115)
T ss_dssp CCSC--SSCCHHHHHHHHTCHHHHH----------------------------HHTTTTCCSSCCCSSSCCTTHHHHTTT
T ss_pred ccCC--CCCCHHHHHHHcCCHHHHH----------------------------HHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 3455 9999999999877655432 222223344455678999999999999
Q ss_pred CHHHHHHHHhcCCCCcccccCCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHH
Q 004887 112 SVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPF 175 (725)
Q Consensus 112 ~~eiVk~LLe~~GadVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPL 175 (725)
+.+++++||++ |++++.+ +..|.||||+|+..|+ .+++++|+++|+|+|.++..|.||-
T Consensus 54 ~~~~~~~Ll~~-g~~~~~~-d~~g~tpl~~A~~~~~---~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 54 HAEIVKLLLAK-GADVNAR-SKDGNTPEHLAKKNGH---HEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp CHHHHHHHTTT-TCCTTCC-CTTCCCTTHHHHTTTC---HHHHHHHHTTSSSHHHHSCCCC---
T ss_pred cHHHHHHHHHc-CCCCccc-CCCCCCHHHHHHHCCC---HHHHHHHHHcCCCCCcCCccccccc
Confidence 99999999999 9999999 9999999999999999 9999999999999999999999874
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.48 E-value=7.7e-15 Score=131.43 Aligned_cols=87 Identities=23% Similarity=0.274 Sum_probs=77.5
Q ss_pred CCCCchHHHHHHhCCCCCHHHHHHHHHHCCCCCCCcCCCCCcHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCcccccccc
Q 004887 132 GLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSV 211 (725)
Q Consensus 132 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADin~~D~~G~TPLhlA~~~g~~e~~~~ivelLL~~Gadvn~~d~~g~Tp 211 (725)
+.+|.|+||+|+..|+ .++|++|++.|++++.+|..|+||||+|+..|+ .+++++|+++|++++.
T Consensus 21 ~~~g~t~L~~A~~~g~---~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~----~~~v~~Ll~~ga~~~~-------- 85 (110)
T 2zgd_A 21 GSDLGKKLLEAARAGQ---DDEVRILMANGADVAAKDKNGSTPLHLAARNGH----LEVVKLLLEAGADVXA-------- 85 (110)
T ss_dssp -CCHHHHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC----HHHHHHHHHTTCCTTC--------
T ss_pred CCccchHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC----HHHHHHHHHcCCCccc--------
Confidence 7899999999999999 999999999999999999999999999999854 5599999999999974
Q ss_pred ccccccCCCCCCCCCCCccccccCCCCcccccccCCCcCccC
Q 004887 212 DLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPIDP 253 (725)
Q Consensus 212 ~~~ass~ls~s~~~~~~~~~~~~~G~TpL~~A~e~g~~~vd~ 253 (725)
++..|.||||+|+..++.+++.
T Consensus 86 --------------------~d~~g~tpl~~A~~~~~~~~~~ 107 (110)
T 2zgd_A 86 --------------------QDKFGKTAFDISIDNGNEDLAE 107 (110)
T ss_dssp --------------------CCTTSCCHHHHHHHHTCHHHHH
T ss_pred --------------------cccCCCcHHHHHHHcCCHHHHH
Confidence 5667778899999988887753
No 115
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.00 E-value=1.2e-10 Score=98.59 Aligned_cols=61 Identities=34% Similarity=0.703 Sum_probs=30.2
Q ss_pred CccCcCCCCCc-CCCCCCCCCcccccCCcccccc---CCcccccccCCCC---CCCCCCc-cccCCCcCc
Q 004887 306 FHYSCMPCPDH-RKGACSRGDMCEYAHGIFESWL---HPAQYRTKLCKDG---TSCMRRV-CFFAHALDE 367 (725)
Q Consensus 306 y~Ykt~~Cp~~-~~g~C~~Gd~C~yaH~~~E~~~---hP~~ykt~~C~~~---~~C~~~~-C~faH~~~e 367 (725)
-.|++.+|+.| .+|.|++|+.|.|+|+..|++. || .|||++|..| +.|+++. |.|+|+.+|
T Consensus 8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~-~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHP-KYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC----------------------------------
T ss_pred CCccchhCHHhhhCCCcCCCCCccCCCCChhhccccccc-cccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 47999999999 5899999999999999999885 44 7999999864 5899975 999999876
No 116
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.56 E-value=6.5e-09 Score=86.52 Aligned_cols=61 Identities=25% Similarity=0.585 Sum_probs=55.9
Q ss_pred cCCCCCcCCCCCCCCC-cccccCCccccccCCcccccccCCCC--CCCCCCccccCCCcCcccc
Q 004887 310 CMPCPDHRKGACSRGD-MCEYAHGIFESWLHPAQYRTKLCKDG--TSCMRRVCFFAHALDELRP 370 (725)
Q Consensus 310 t~~Cp~~~~g~C~~Gd-~C~yaH~~~E~~~hP~~ykt~~C~~~--~~C~~~~C~faH~~~elr~ 370 (725)
...|++|.+|.|.+|+ .|.|+|...+++.++...++..|.+| +.|.++.|.|+|...+||.
T Consensus 6 ~~vC~~f~~G~C~rg~~~C~f~H~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~~~~L~~ 69 (70)
T 3d2q_A 6 LEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPPAHLQA 69 (70)
T ss_dssp EEBCHHHHTTCCSSCTTTCSSBCCCTTSCCBTTTTEEEBCHHHHTTCCCCTTCCSBCCCHHHHC
T ss_pred chhCHHHhcCCCCCCCCCCCCccCcccccccccCCcceeccccCcCCCCCCCcCeeCCHHHHhc
Confidence 4579999999999999 59999999999999999999999996 7899999999999998874
No 117
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=98.14 E-value=1.4e-06 Score=77.14 Aligned_cols=50 Identities=28% Similarity=0.530 Sum_probs=43.4
Q ss_pred CccCcCCCCCcCCCCCCCCCcccccCCccccccCCcccccccCCCC---CCCCCC-ccccCCCcCc
Q 004887 306 FHYSCMPCPDHRKGACSRGDMCEYAHGIFESWLHPAQYRTKLCKDG---TSCMRR-VCFFAHALDE 367 (725)
Q Consensus 306 y~Ykt~~Cp~~~~g~C~~Gd~C~yaH~~~E~~~hP~~ykt~~C~~~---~~C~~~-~C~faH~~~e 367 (725)
..+++..|+.|.+|.|.+|+.|.|+|. +.+|++| +.|+++ .|.|+|....
T Consensus 9 ~~~k~~lC~~f~~G~C~~G~~C~f~H~------------~~~C~~f~~~G~C~~G~~C~f~H~~~~ 62 (98)
T 2cqe_A 9 LPKKRELCKFYITGFCARAENCPYMHG------------DFPCKLYHTTGNCINGDDCMFSHDPLT 62 (98)
T ss_dssp CSCCCSBCTTTTTTCCSCSTTCSSBSS------------SSBCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred CCCCCccCcccccCcCCCCCCCCCCCC------------CCcCcCcccCCcCCCCCCCcccCCCCc
Confidence 357889999999999999999999999 6789976 689996 4999999653
No 118
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=1.4e-06 Score=73.80 Aligned_cols=60 Identities=23% Similarity=0.424 Sum_probs=49.5
Q ss_pred CccCccCcCCCCCcCCCCCCCCCcccccCCccccccCCcccccccCCCC---CCCCCCccccCCCcCccc
Q 004887 303 PRKFHYSCMPCPDHRKGACSRGDMCEYAHGIFESWLHPAQYRTKLCKDG---TSCMRRVCFFAHALDELR 369 (725)
Q Consensus 303 Pr~y~Ykt~~Cp~~~~g~C~~Gd~C~yaH~~~E~~~hP~~ykt~~C~~~---~~C~~~~C~faH~~~elr 369 (725)
|....+++..|..|.+|.|.+|+.|.|+|...+ .|+..|++| +.|....|.|+|...+.+
T Consensus 3 p~~~~~k~~~C~~fl~G~C~~G~~C~fsH~~~~-------~~~~~C~~f~~~G~C~~~~C~f~H~~~~~~ 65 (77)
T 2d9n_A 3 SGSSGEKTVVCKHWLRGLCKKGDQCEFLHEYDM-------TKMPECYFYSKFGECSNKECPFLHIDPESK 65 (77)
T ss_dssp CCCSCCTTSBCHHHHTTCCSCTTSSSSBCSCCT-------TTSCBCHHHHHTCCCCCSSCSSBCCCTTSS
T ss_pred CCCCCCcceeCHhHccCcCCCCCCCCCcccccc-------CcCCCCcccCCCCccCCCCeeccCCCcccc
Confidence 344568889999999999999999999998653 366789987 789977799999976554
No 119
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=2.8e-07 Score=81.56 Aligned_cols=63 Identities=25% Similarity=0.606 Sum_probs=56.1
Q ss_pred CcCCCCCcCCCCCCCCC-cccccCCccccccCCcccccccCCCC--CCCCCCccccCCCcCccccc
Q 004887 309 SCMPCPDHRKGACSRGD-MCEYAHGIFESWLHPAQYRTKLCKDG--TSCMRRVCFFAHALDELRPL 371 (725)
Q Consensus 309 kt~~Cp~~~~g~C~~Gd-~C~yaH~~~E~~~hP~~ykt~~C~~~--~~C~~~~C~faH~~~elr~~ 371 (725)
+...|.+|.+|.|.+|+ .|.|+|...+....+...++..|.+| +.|.|+.|.|.|...+|+.-
T Consensus 19 k~~VCr~FlrG~C~rgd~~C~FsH~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~~~~l~~~ 84 (98)
T 2e5s_A 19 KLEVCREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMREKCKYFHPPAHLQAK 84 (98)
T ss_dssp EEEBCSHHHHTCCSSHHHHCSSBCCSSCCSCCTTTCEEEBCHHHHHTCCCCTTCCSBCCCHHHHHH
T ss_pred hhhhhHHHhcCcCCCCCCCCCCcCCchhccccccCCccccchhhccCCCCCCCcCccCChHHHHHH
Confidence 44689999999999999 79999999888777778999999998 79999999999999888653
No 120
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.87 E-value=1.3e-06 Score=71.47 Aligned_cols=40 Identities=30% Similarity=0.547 Sum_probs=36.6
Q ss_pred CCCCCcCCCCCCCCCcccccCCcccccc---CCcccccccCCC
Q 004887 311 MPCPDHRKGACSRGDMCEYAHGIFESWL---HPAQYRTKLCKD 350 (725)
Q Consensus 311 ~~Cp~~~~g~C~~Gd~C~yaH~~~E~~~---hP~~ykt~~C~~ 350 (725)
.+|..|.+|.|++|+.|.||||..||+. .+...|+++|+-
T Consensus 21 ~LC~~~~~G~C~~G~~C~FAHG~~ELr~~~~R~~~~k~k~~~A 63 (69)
T 2d9m_A 21 SICDRYMNGTCPEGNSCKFAHGNAELHEWEERRDALKMKLNKA 63 (69)
T ss_dssp SBCHHHHHSCCSSCSSCSSBSSHHHHHHHHHHHHHHTTTCCSC
T ss_pred ccCcccCcCCCCCCCccCCcCCHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987 588899999875
No 121
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=97.82 E-value=3.8e-06 Score=70.14 Aligned_cols=56 Identities=25% Similarity=0.484 Sum_probs=46.0
Q ss_pred ccCcCCCCCcCCCCCCCCCcccccCCccccccCCcccccccCCCC---CCCCCCccccCCCcCccc
Q 004887 307 HYSCMPCPDHRKGACSRGDMCEYAHGIFESWLHPAQYRTKLCKDG---TSCMRRVCFFAHALDELR 369 (725)
Q Consensus 307 ~Ykt~~Cp~~~~g~C~~Gd~C~yaH~~~E~~~hP~~ykt~~C~~~---~~C~~~~C~faH~~~elr 369 (725)
.++...|..|.+|.|.+|+.|.|+|... ..++..|++| +.|.+..|.|.|...+.|
T Consensus 13 ~~k~~vCk~fl~G~C~~G~~C~fsH~~~-------~~~~~~C~~f~~~G~C~~~~C~y~H~~p~~k 71 (72)
T 2rhk_C 13 GEKTVVCKHWLRGLCKKGDQCEFLHEYD-------MTKMSECYFYSKFGECSNKECPFLHIDPESK 71 (72)
T ss_dssp CCCCSBCHHHHTTCCCCGGGSSSBCSCC-------TTSCCBCHHHHHHSCCSBTTCCSBCCCCC--
T ss_pred CCcCeeCHHHhcCCCCCCCCCCCccccc-------cccCCcccccCCCCCCCCCCeeccCCCcccc
Confidence 4677899999999999999999999843 3477789984 789998899999976654
No 122
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=97.59 E-value=2.6e-05 Score=65.56 Aligned_cols=62 Identities=26% Similarity=0.523 Sum_probs=17.5
Q ss_pred ccccccc----cccCCCCCCCCCCCCCCcccCCCCccCccCcCCCCCcC-CCCCCCCCcccccCCccc
Q 004887 273 FKIRPCS----RAYSHDWTECPFAHPGENARRRDPRKFHYSCMPCPDHR-KGACSRGDMCEYAHGIFE 335 (725)
Q Consensus 273 fkv~~Cs----r~~~hd~~eCp~~H~~E~arrr~Pr~y~Ykt~~Cp~~~-~g~C~~Gd~C~yaH~~~E 335 (725)
||...|. .+.+.....|.|+|..+ ..+...+.-.|++.+|+.|. .|.|++|+.|.|+|+..|
T Consensus 10 ~kt~~C~~f~~~G~C~~G~~C~f~H~~~-e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 10 YKTELCRTYSESGRCRYGAKCQFAHGLG-ELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp CCSCCCSGGGGTSCCTTTTTCSSCSSSC-CGGGTC---------------------------------
T ss_pred ccchhCHHhhhCCCcCCCCCccCCCCCh-hhccccccccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 3444554 34455566799999765 33433344578899999775 899999999999999766
No 123
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.44 E-value=1.5e-05 Score=65.14 Aligned_cols=30 Identities=27% Similarity=0.413 Sum_probs=25.4
Q ss_pred ccccccCCCC--CCCCCCc-cccCCCcCccccc
Q 004887 342 QYRTKLCKDG--TSCMRRV-CFFAHALDELRPL 371 (725)
Q Consensus 342 ~ykt~~C~~~--~~C~~~~-C~faH~~~elr~~ 371 (725)
-.|+++|+.| +.|+|+. |.||||++|||..
T Consensus 17 ~~k~~LC~~~~~G~C~~G~~C~FAHG~~ELr~~ 49 (69)
T 2d9m_A 17 TGYFSICDRYMNGTCPEGNSCKFAHGNAELHEW 49 (69)
T ss_dssp CSCCSBCHHHHHSCCSSCSSCSSBSSHHHHHHH
T ss_pred CCCcccCcccCcCCCCCCCccCCcCCHHHHhhH
Confidence 3477999986 6899975 9999999999873
No 124
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=97.30 E-value=2.5e-05 Score=66.89 Aligned_cols=67 Identities=27% Similarity=0.541 Sum_probs=51.6
Q ss_pred cCcCCCCCcCCCCCCCCC-cccccCCccccccCCcccccccCCCC--CCCCCCccccCCCcCcccccccCCC
Q 004887 308 YSCMPCPDHRKGACSRGD-MCEYAHGIFESWLHPAQYRTKLCKDG--TSCMRRVCFFAHALDELRPLYASTG 376 (725)
Q Consensus 308 Ykt~~Cp~~~~g~C~~Gd-~C~yaH~~~E~~~hP~~ykt~~C~~~--~~C~~~~C~faH~~~elr~~~~~~~ 376 (725)
.+...|.+|.+|.|.+|| .|.|+|....+.. ...+...|.+| +.|.++.|.|.|....|..-...+|
T Consensus 7 ~~~~VCr~FlrG~C~r~d~~C~f~H~~~~~~~--~~~~~~vC~dflkG~C~r~~C~y~H~~~~l~~~~~i~g 76 (83)
T 3d2n_A 7 LTLEVCREFQRGTCSRPDTECKFAHPSKSCQV--ENGRVIACFDSLKGRCSRENCKYLHPPPHLKTQLEING 76 (83)
T ss_dssp GEEEBCTTGGGTCCCSCTTTCSSBCCCTTCCE--ETTEEECCHHHHTTCCCCSSCSSCCCCHHHHHHHHHHT
T ss_pred ccchhcHHHhcCCCCCCCCCCCCcCCCccccc--cCCceeehhHhhhccccCCCcceeCChHHHHHHHhcCC
Confidence 344689999999999997 9999998653221 13456679986 6899999999999988876555444
No 125
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=96.93 E-value=7.9e-05 Score=64.59 Aligned_cols=62 Identities=27% Similarity=0.559 Sum_probs=48.5
Q ss_pred CcCCCCCcCCCCCCCCC-cccccCCccccccCCcccccccCCCC--CCCCCCccccCCCcCcccccc
Q 004887 309 SCMPCPDHRKGACSRGD-MCEYAHGIFESWLHPAQYRTKLCKDG--TSCMRRVCFFAHALDELRPLY 372 (725)
Q Consensus 309 kt~~Cp~~~~g~C~~Gd-~C~yaH~~~E~~~hP~~ykt~~C~~~--~~C~~~~C~faH~~~elr~~~ 372 (725)
+...|++|.+|.|.+|+ .|.|+|.......- .-+...|.+| +.|.+..|.|.|....|..-.
T Consensus 16 ~~~VCrdFlrG~C~r~d~~CrfsH~~~~~~v~--~~~~~vC~dflkG~C~r~~Cky~H~~~hl~~~~ 80 (89)
T 2rpp_A 16 TLEVCRQFQRGTCSRSDEECKFAHPPKSCQVE--NGRVIACFDSLKGRCSRENCKYLHPPTHLKTQL 80 (89)
T ss_dssp EECBCHHHHHTCCCCCTTTSSSBCCCSSSCCB--TTBEEBCHHHHHTCCCCTTCCSBCCCHHHHHHH
T ss_pred hhhhchHHhcCCCCCCCCCCCCcCCCcccccc--CCceeeehhhhhCcCCCCCcceecCHHHHHHHH
Confidence 34589999999999998 99999986543211 2356779987 689999999999988776543
No 126
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.64 E-value=0.0071 Score=50.79 Aligned_cols=54 Identities=24% Similarity=0.374 Sum_probs=39.0
Q ss_pred cccCCCCCCCCCCCCCCcccCCCCccCccCcCCCCCcCC-CCCCCCCcccccCCccccccCCcccccccCCCC
Q 004887 280 RAYSHDWTECPFAHPGENARRRDPRKFHYSCMPCPDHRK-GACSRGDMCEYAHGIFESWLHPAQYRTKLCKDG 351 (725)
Q Consensus 280 r~~~hd~~eCp~~H~~E~arrr~Pr~y~Ykt~~Cp~~~~-g~C~~Gd~C~yaH~~~E~~~hP~~ykt~~C~~~ 351 (725)
++.+.....|.|.|... .. +...|..|.+ |.|. |+.|.|.|... ..++..|.+|
T Consensus 18 ~G~C~~G~~C~fsH~~~-~~---------~~~~C~~f~~~G~C~-~~~C~f~H~~~-------~~~~~~C~~f 72 (77)
T 2d9n_A 18 RGLCKKGDQCEFLHEYD-MT---------KMPECYFYSKFGECS-NKECPFLHIDP-------ESKIKDCPWS 72 (77)
T ss_dssp TTCCSCTTSSSSBCSCC-TT---------TSCBCHHHHHTCCCC-CSSCSSBCCCT-------TSSCSSSSCC
T ss_pred cCcCCCCCCCCCccccc-cC---------cCCCCcccCCCCccC-CCCeeccCCCc-------cccCCCCccc
Confidence 34454445699999653 21 2347999987 9999 89999999853 3467788876
No 127
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=95.27 E-value=0.01 Score=52.21 Aligned_cols=39 Identities=28% Similarity=0.736 Sum_probs=31.1
Q ss_pred ccCCCCCCCCCCCCCCcccCCCCccCccCcCCCCCc-CCCCCCCCCcccccCCcc
Q 004887 281 AYSHDWTECPFAHPGENARRRDPRKFHYSCMPCPDH-RKGACSRGDMCEYAHGIF 334 (725)
Q Consensus 281 ~~~hd~~eCp~~H~~E~arrr~Pr~y~Ykt~~Cp~~-~~g~C~~Gd~C~yaH~~~ 334 (725)
+.+.....|+|.|. ...|+.| .+|.|++|+.|.|+|...
T Consensus 22 G~C~~G~~C~f~H~---------------~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 22 GFCARAENCPYMHG---------------DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp TCCSCSTTCSSBSS---------------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CcCCCCCCCCCCCC---------------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 44444456999995 4689999 599999999999999853
No 128
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=94.02 E-value=0.021 Score=47.00 Aligned_cols=46 Identities=33% Similarity=0.566 Sum_probs=34.2
Q ss_pred CCCCCCCCCcccCCCCccCccCcCCCCCcCCCCCCCCCcccccCCccccc
Q 004887 288 ECPFAHPGENARRRDPRKFHYSCMPCPDHRKGACSRGDMCEYAHGIFESW 337 (725)
Q Consensus 288 eCp~~H~~E~arrr~Pr~y~Ykt~~Cp~~~~g~C~~Gd~C~yaH~~~E~~ 337 (725)
+|+|.|..+.. .......+...|..|.+|.|.+| .|.|.|...+++
T Consensus 23 ~C~f~H~~~~~---~~~~~~~~~~vC~~flkG~C~r~-~C~y~H~~~~L~ 68 (70)
T 3d2q_A 23 DCRFAHPADST---MIDTNDNTVTVCMDYIKGRCSRE-KCKYFHPPAHLQ 68 (70)
T ss_dssp TCSSBCCCTTS---CCBTTTTEEEBCHHHHTTCCCCT-TCCSBCCCHHHH
T ss_pred CCCCccCcccc---cccccCCcceeccccCcCCCCCC-CcCeeCCHHHHh
Confidence 49999965311 11223456789999999999999 999999977654
No 129
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=91.43 E-value=0.026 Score=47.67 Aligned_cols=62 Identities=23% Similarity=0.575 Sum_probs=40.8
Q ss_pred ccccccCCCCCCCCCCCCCCcccCCCCccCccCcCCCCCcCCCCCCCCCcccccCCccccccCCcccccccCCCCCCCCC
Q 004887 277 PCSRAYSHDWTECPFAHPGENARRRDPRKFHYSCMPCPDHRKGACSRGDMCEYAHGIFESWLHPAQYRTKLCKDGTSCMR 356 (725)
Q Consensus 277 ~Csr~~~hd~~eCp~~H~~E~arrr~Pr~y~Ykt~~Cp~~~~g~C~~Gd~C~yaH~~~E~~~hP~~ykt~~C~~~~~C~~ 356 (725)
.|..+.......|+|.|... ...|..... |.+ ..|.|+|. ....|+++..|.+
T Consensus 11 ~CKf~~~Ctn~~C~f~Hp~~-------------~~~Cr~g~~--C~~-~~C~f~HP-----------~~~~Crf~~~C~n 63 (80)
T 2lhn_A 11 QCKFGTHCTNKRCKYRHARS-------------HIMCREGAN--CTR-IDCLFGHP-----------INEDCRFGVNCKN 63 (80)
Confidence 34333332335699999431 235666654 666 35888774 1367999999999
Q ss_pred CccccCCCc
Q 004887 357 RVCFFAHAL 365 (725)
Q Consensus 357 ~~C~faH~~ 365 (725)
..|.|.|-+
T Consensus 64 ~~C~F~Hp~ 72 (80)
T 2lhn_A 64 IYCLFRHPP 72 (80)
Confidence 999999953
No 130
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=91.14 E-value=0.03 Score=47.30 Aligned_cols=41 Identities=29% Similarity=0.809 Sum_probs=33.3
Q ss_pred CCCCCcCCCCCCCCCcccccCCccccccCCcccccccCCCCCCCCCCccccCCC
Q 004887 311 MPCPDHRKGACSRGDMCEYAHGIFESWLHPAQYRTKLCKDGTSCMRRVCFFAHA 364 (725)
Q Consensus 311 ~~Cp~~~~g~C~~Gd~C~yaH~~~E~~~hP~~ykt~~C~~~~~C~~~~C~faH~ 364 (725)
++|..+.. |++ ..|.|.|... ...|+++.+|.+..|.|+|-
T Consensus 10 e~CKf~~~--Ctn-~~C~f~Hp~~----------~~~Cr~g~~C~~~~C~f~HP 50 (80)
T 2lhn_A 10 EQCKFGTH--CTN-KRCKYRHARS----------HIMCREGANCTRIDCLFGHP 50 (80)
Confidence 47766666 888 7999999542 44899999999999999994
No 131
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.69 E-value=0.041 Score=48.35 Aligned_cols=46 Identities=33% Similarity=0.590 Sum_probs=33.7
Q ss_pred CCCCCCCCCcccCCCCccCccCcCCCCCcCCCCCCCCCcccccCCccccc
Q 004887 288 ECPFAHPGENARRRDPRKFHYSCMPCPDHRKGACSRGDMCEYAHGIFESW 337 (725)
Q Consensus 288 eCp~~H~~E~arrr~Pr~y~Ykt~~Cp~~~~g~C~~Gd~C~yaH~~~E~~ 337 (725)
+|+|.|+.+... .+ .-..+...|..|.+|.|.++ .|.|.|...++.
T Consensus 37 ~C~FsH~~~~~~-~~--~~~~~~~vC~~flkG~C~r~-~C~y~H~~~~l~ 82 (98)
T 2e5s_A 37 DCRFAHPADSTM-ID--TSDNTVTVCMDYIKGRCMRE-KCKYFHPPAHLQ 82 (98)
T ss_dssp HCSSBCCSSCCS-CC--TTTCEEEBCHHHHHTCCCCT-TCCSBCCCHHHH
T ss_pred CCCCcCCchhcc-cc--ccCCccccchhhccCCCCCC-CcCccCChHHHH
Confidence 499999754221 11 12456679999999999999 999999976554
No 132
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=90.06 E-value=0.1 Score=43.11 Aligned_cols=45 Identities=27% Similarity=0.416 Sum_probs=33.2
Q ss_pred cccCCCCCCCCCCCCCCcccCCCCccCccCcCCCCCcCC-CCCCCCCcccccCCccc
Q 004887 280 RAYSHDWTECPFAHPGENARRRDPRKFHYSCMPCPDHRK-GACSRGDMCEYAHGIFE 335 (725)
Q Consensus 280 r~~~hd~~eCp~~H~~E~arrr~Pr~y~Ykt~~Cp~~~~-g~C~~Gd~C~yaH~~~E 335 (725)
++.+.....|.|.|... . -+...|..|.+ |.|.+ +.|.|.|...+
T Consensus 24 ~G~C~~G~~C~fsH~~~-~---------~~~~~C~~f~~~G~C~~-~~C~y~H~~p~ 69 (72)
T 2rhk_C 24 RGLCKKGDQCEFLHEYD-M---------TKMSECYFYSKFGECSN-KECPFLHIDPE 69 (72)
T ss_dssp TTCCCCGGGSSSBCSCC-T---------TSCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred cCCCCCCCCCCCccccc-c---------ccCCcccccCCCCCCCC-CCeeccCCCcc
Confidence 44554445699999643 1 13458999998 99999 99999998654
No 133
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=85.75 E-value=0.19 Score=43.32 Aligned_cols=52 Identities=37% Similarity=0.697 Sum_probs=36.8
Q ss_pred CCCCCCCCCcccCCCCccCccCcCCCCCcCCCCCCCCCcccccCCccccccCCcccccccCCCCC
Q 004887 288 ECPFAHPGENARRRDPRKFHYSCMPCPDHRKGACSRGDMCEYAHGIFESWLHPAQYRTKLCKDGT 352 (725)
Q Consensus 288 eCp~~H~~E~arrr~Pr~y~Ykt~~Cp~~~~g~C~~Gd~C~yaH~~~E~~~hP~~ykt~~C~~~~ 352 (725)
+|.|+|..+...- -.-+...|-.|.+|.|.++ .|.|.|. |...++.+|..++
T Consensus 34 ~CrfsH~~~~~~v-----~~~~~~vC~dflkG~C~r~-~Cky~H~-------~~hl~~~~~i~g~ 85 (89)
T 2rpp_A 34 ECKFAHPPKSCQV-----ENGRVIACFDSLKGRCSRE-NCKYLHP-------PTHLKTQLEINSG 85 (89)
T ss_dssp TSSSBCCCSSSCC-----BTTBEEBCHHHHHTCCCCT-TCCSBCC-------CHHHHHHHHHCSC
T ss_pred CCCCcCCCccccc-----cCCceeeehhhhhCcCCCC-CcceecC-------HHHHHHHHHhcCC
Confidence 6999997542110 1224568999999999998 8999998 5566666666554
No 134
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=83.31 E-value=0.46 Score=40.37 Aligned_cols=42 Identities=38% Similarity=0.702 Sum_probs=30.4
Q ss_pred CCCCCCCCCcccCCCCccCccCcCCCCCcCCCCCCCCCcccccCCccc
Q 004887 288 ECPFAHPGENARRRDPRKFHYSCMPCPDHRKGACSRGDMCEYAHGIFE 335 (725)
Q Consensus 288 eCp~~H~~E~arrr~Pr~y~Ykt~~Cp~~~~g~C~~Gd~C~yaH~~~E 335 (725)
+|.|+|+.... ..-.-+...|-.|.+|.|.++ .|.|.|...+
T Consensus 26 ~C~f~H~~~~~-----~~~~~~~~vC~dflkG~C~r~-~C~y~H~~~~ 67 (83)
T 3d2n_A 26 ECKFAHPSKSC-----QVENGRVIACFDSLKGRCSRE-NCKYLHPPPH 67 (83)
T ss_dssp TCSSBCCCTTC-----CEETTEEECCHHHHTTCCCCS-SCSSCCCCHH
T ss_pred CCCCcCCCccc-----cccCCceeehhHhhhccccCC-CcceeCChHH
Confidence 69999975321 111234568999999999998 9999998543
No 135
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=65.02 E-value=1.4 Score=44.69 Aligned_cols=24 Identities=42% Similarity=0.744 Sum_probs=21.3
Q ss_pred cCCCCCcCCCCCCCCCcccccCCc
Q 004887 310 CMPCPDHRKGACSRGDMCEYAHGI 333 (725)
Q Consensus 310 t~~Cp~~~~g~C~~Gd~C~yaH~~ 333 (725)
+..|..|.+|.|.+|+.|.|.|..
T Consensus 70 ~~~C~ffakG~C~~G~~C~y~H~l 93 (240)
T 3u1l_A 70 LFFCLFFAKGMCCLGPKCEYLHHI 93 (240)
T ss_dssp CSBCHHHHTTCCSCGGGCSSBBSC
T ss_pred CeEcCccccCCCCCCCCCCccCCC
Confidence 458999999999999999999964
No 136
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=59.62 E-value=3.8 Score=31.11 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=15.5
Q ss_pred cccccCCCC---CCCCCCc-cccCCCcC
Q 004887 343 YRTKLCKDG---TSCMRRV-CFFAHALD 366 (725)
Q Consensus 343 ykt~~C~~~---~~C~~~~-C~faH~~~ 366 (725)
.+|.+|..| +.|+++. |.|.|..|
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCC
Confidence 466677753 5677654 77777654
No 137
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=45.96 E-value=6.4 Score=29.87 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=22.9
Q ss_pred cCcCCCCCcC-CCCCCCCCcccccCCc
Q 004887 308 YSCMPCPDHR-KGACSRGDMCEYAHGI 333 (725)
Q Consensus 308 Ykt~~Cp~~~-~g~C~~Gd~C~yaH~~ 333 (725)
.++.+|..|. -|-|++|..|.+.|.+
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDi 44 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDI 44 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred cccchhhhccccccCCCCCCCCccccC
Confidence 5677999986 7899999999999985
No 138
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=33.71 E-value=8.7 Score=38.42 Aligned_cols=22 Identities=32% Similarity=0.701 Sum_probs=0.0
Q ss_pred ccccCCCCCCCCCCc-cccCCCc
Q 004887 344 RTKLCKDGTSCMRRV-CFFAHAL 365 (725)
Q Consensus 344 kt~~C~~~~~C~~~~-C~faH~~ 365 (725)
+..+|.++..|.|+. |.|.|-+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~ 213 (223)
T 3v33_A 191 RKQPCPYGRKCTYGIKCRFFHPE 213 (223)
T ss_dssp -----------------------
T ss_pred CCCCCCCCcccccCCcceecCCc
Confidence 566788888888875 8888865
No 139
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=32.23 E-value=11 Score=37.63 Aligned_cols=34 Identities=35% Similarity=0.696 Sum_probs=3.6
Q ss_pred cccCCCCccCccCcCCCCCcCCCCCCCCCcccccCC
Q 004887 297 NARRRDPRKFHYSCMPCPDHRKGACSRGDMCEYAHG 332 (725)
Q Consensus 297 ~arrr~Pr~y~Ykt~~Cp~~~~g~C~~Gd~C~yaH~ 332 (725)
+..|..|..-.-+..+||.-++ |+||.+|.|-|.
T Consensus 179 ~~L~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 212 (223)
T 3v33_A 179 NFLRKKPLTLEHRKQPCPYGRK--CTYGIKCRFFHP 212 (223)
T ss_dssp HHTBSCC-----------------------------
T ss_pred HHhccCCCCcccCCCCCCCCcc--cccCCcceecCC
Confidence 3455556555556778999887 999999999764
Done!