Query 004888
Match_columns 725
No_of_seqs 386 out of 1933
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 14:33:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004888.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004888hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2244 Highly conserved prote 100.0 4E-155 8E-160 1247.9 48.0 609 76-725 47-677 (786)
2 COG1331 Highly conserved prote 100.0 5E-154 1E-158 1293.5 58.7 564 100-724 5-568 (667)
3 PF03190 Thioredox_DsbH: Prote 100.0 3.6E-54 7.9E-59 417.0 14.1 163 102-264 1-163 (163)
4 cd02955 SSP411 TRX domain, SSP 100.0 1E-31 2.3E-36 251.7 13.8 123 124-246 1-123 (124)
5 cd00249 AGE AGE domain; N-acyl 99.9 5.9E-24 1.3E-28 233.4 30.0 296 352-723 26-334 (384)
6 cd00249 AGE AGE domain; N-acyl 99.9 3.3E-21 7.2E-26 211.6 31.6 339 285-699 16-379 (384)
7 cd02960 AGR Anterior Gradient 99.8 2.3E-20 5E-25 175.8 10.7 90 119-218 4-94 (130)
8 PF07221 GlcNAc_2-epim: N-acyl 99.8 2.4E-20 5.3E-25 203.0 7.8 299 360-680 1-335 (346)
9 PF13899 Thioredoxin_7: Thiore 99.8 1.1E-19 2.3E-24 158.0 7.6 82 122-212 1-82 (82)
10 cd02958 UAS UAS family; UAS is 99.7 6E-18 1.3E-22 155.8 9.3 105 126-242 5-111 (114)
11 COG2942 N-acyl-D-glucosamine 2 99.7 1.9E-16 4.2E-21 171.0 22.1 311 348-679 23-362 (388)
12 cd02959 ERp19 Endoplasmic reti 99.7 9.7E-18 2.1E-22 155.9 9.4 112 119-243 1-114 (117)
13 cd02951 SoxW SoxW family; SoxW 99.6 4.9E-16 1.1E-20 144.9 10.0 109 127-242 2-119 (125)
14 smart00594 UAS UAS domain. 99.6 3.8E-15 8.1E-20 139.3 8.8 89 120-214 9-97 (122)
15 cd02953 DsbDgamma DsbD gamma f 99.6 4.9E-15 1.1E-19 133.7 7.7 95 128-226 1-97 (104)
16 PF03663 Glyco_hydro_76: Glyco 99.5 1.2E-12 2.6E-17 144.6 23.1 285 287-720 8-313 (370)
17 PRK00293 dipZ thiol:disulfide 99.5 1.1E-13 2.5E-18 160.4 11.7 113 119-242 450-570 (571)
18 COG1331 Highly conserved prote 99.5 2.8E-12 6E-17 146.9 22.5 158 375-656 405-571 (667)
19 PF07221 GlcNAc_2-epim: N-acyl 99.4 5.7E-13 1.2E-17 145.3 11.4 159 534-724 11-172 (346)
20 COG4232 Thiol:disulfide interc 99.4 5.4E-13 1.2E-17 150.7 9.6 113 118-241 451-567 (569)
21 PF13098 Thioredoxin_2: Thiore 99.4 1E-13 2.2E-18 126.2 1.2 99 134-238 1-112 (112)
22 cd02991 UAS_ETEA UAS family, E 99.3 1.8E-11 3.9E-16 113.8 8.8 101 127-243 6-114 (116)
23 COG2143 Thioredoxin-related pr 99.2 3.8E-11 8.3E-16 114.6 10.5 116 128-250 32-157 (182)
24 PF03663 Glyco_hydro_76: Glyco 99.2 1E-09 2.3E-14 121.4 18.1 164 536-723 86-253 (370)
25 cd02950 TxlA TRX-like protein 99.1 8.9E-11 1.9E-15 112.9 8.2 85 129-224 11-98 (142)
26 KOG2244 Highly conserved prote 99.1 7.3E-10 1.6E-14 122.6 12.5 195 335-656 473-679 (786)
27 cd02954 DIM1 Dim1 family; Dim1 99.0 1.1E-09 2.4E-14 101.5 9.5 78 129-218 3-82 (114)
28 KOG0910 Thioredoxin-like prote 99.0 2.4E-09 5.1E-14 102.8 9.9 93 118-226 42-138 (150)
29 cd02949 TRX_NTR TRX domain, no 99.0 9.1E-10 2E-14 98.3 6.8 78 135-224 10-88 (97)
30 PRK10996 thioredoxin 2; Provis 99.0 1.6E-09 3.5E-14 103.7 8.6 95 128-240 42-137 (139)
31 cd02956 ybbN ybbN protein fami 98.9 1.7E-09 3.7E-14 95.7 7.1 71 136-218 10-80 (96)
32 PLN00410 U5 snRNP protein, DIM 98.9 3.7E-09 8E-14 101.6 9.4 74 136-220 21-95 (142)
33 cd02948 TRX_NDPK TRX domain, T 98.9 5.1E-09 1.1E-13 94.6 8.1 79 128-219 7-86 (102)
34 cd04791 LanC_SerThrkinase Lant 98.9 5.2E-08 1.1E-12 104.7 16.8 151 540-724 80-230 (321)
35 cd02984 TRX_PICOT TRX domain, 98.8 7.6E-09 1.7E-13 91.5 7.5 70 138-219 14-83 (97)
36 cd02986 DLP Dim1 family, Dim1- 98.8 6.8E-09 1.5E-13 95.9 6.8 76 128-217 6-81 (114)
37 cd02985 TRX_CDSP32 TRX family, 98.8 1.2E-08 2.7E-13 92.4 8.1 73 137-219 14-86 (103)
38 cd03000 PDI_a_TMX3 PDIa family 98.8 9.3E-09 2E-13 92.9 7.2 74 126-211 4-80 (104)
39 TIGR01126 pdi_dom protein disu 98.8 1.6E-08 3.6E-13 89.5 8.6 78 128-216 3-82 (102)
40 PF07470 Glyco_hydro_88: Glyco 98.8 2.6E-07 5.6E-12 100.8 19.4 150 547-724 127-285 (336)
41 cd02993 PDI_a_APS_reductase PD 98.8 2.5E-08 5.5E-13 91.1 8.4 79 129-217 12-92 (109)
42 PHA02278 thioredoxin-like prot 98.8 2.1E-08 4.5E-13 91.5 7.7 84 129-224 5-93 (103)
43 cd03003 PDI_a_ERdj5_N PDIa fam 98.8 2.5E-08 5.5E-13 89.3 8.2 79 128-218 8-86 (101)
44 cd02997 PDI_a_PDIR PDIa family 98.7 3.1E-08 6.7E-13 88.3 7.9 79 128-218 7-89 (104)
45 cd02963 TRX_DnaJ TRX domain, D 98.7 2.1E-08 4.6E-13 92.1 6.5 73 135-219 21-94 (111)
46 KOG0907 Thioredoxin [Posttrans 98.7 2.9E-08 6.2E-13 91.0 6.9 75 128-217 11-87 (106)
47 cd02996 PDI_a_ERp44 PDIa famil 98.7 4.3E-08 9.3E-13 89.1 8.0 78 128-217 8-91 (108)
48 TIGR01068 thioredoxin thioredo 98.7 7.4E-08 1.6E-12 84.9 9.0 78 130-219 5-83 (101)
49 cd02961 PDI_a_family Protein D 98.7 7.2E-08 1.6E-12 84.2 8.4 79 128-217 5-85 (101)
50 cd03004 PDI_a_ERdj5_C PDIa fam 98.7 6.4E-08 1.4E-12 87.0 8.1 79 129-218 9-88 (104)
51 cd02962 TMX2 TMX2 family; comp 98.6 6.9E-08 1.5E-12 94.1 8.2 114 128-248 35-151 (152)
52 PTZ00051 thioredoxin; Provisio 98.6 7.5E-08 1.6E-12 85.4 7.5 79 128-219 8-86 (98)
53 cd03006 PDI_a_EFP1_N PDIa fami 98.6 8.6E-08 1.9E-12 88.9 7.4 77 128-216 16-96 (113)
54 cd02999 PDI_a_ERp44_like PDIa 98.6 6.9E-08 1.5E-12 87.2 6.3 67 135-213 15-82 (100)
55 cd02947 TRX_family TRX family; 98.6 1E-07 2.2E-12 81.4 6.5 75 131-218 3-77 (93)
56 PRK09381 trxA thioredoxin; Pro 98.6 2.4E-07 5.1E-12 84.1 8.5 73 135-219 18-90 (109)
57 TIGR00385 dsbE periplasmic pro 98.6 2.6E-07 5.6E-12 91.5 9.4 79 135-219 60-153 (173)
58 cd03002 PDI_a_MPD1_like PDI fa 98.6 2E-07 4.4E-12 84.2 7.8 69 135-214 15-85 (109)
59 COG2942 N-acyl-D-glucosamine 2 98.5 7.3E-06 1.6E-10 89.7 20.7 155 543-721 115-270 (388)
60 PRK15412 thiol:disulfide inter 98.5 2.6E-07 5.7E-12 92.5 8.8 78 136-219 66-158 (185)
61 cd02989 Phd_like_TxnDC9 Phosdu 98.5 2.5E-07 5.5E-12 85.5 8.0 78 128-218 12-89 (113)
62 PF00085 Thioredoxin: Thioredo 98.5 1.6E-07 3.4E-12 83.2 6.3 77 130-218 8-85 (103)
63 cd02995 PDI_a_PDI_a'_C PDIa fa 98.5 2.7E-07 5.9E-12 82.1 7.7 73 130-214 9-84 (104)
64 cd02975 PfPDO_like_N Pyrococcu 98.5 4.2E-07 9.2E-12 84.0 8.7 96 129-243 13-111 (113)
65 cd03005 PDI_a_ERp46 PDIa famil 98.5 3.7E-07 8E-12 81.2 8.1 77 128-217 7-86 (102)
66 cd02998 PDI_a_ERp38 PDIa famil 98.5 4.2E-07 9E-12 80.9 7.5 73 134-217 14-89 (105)
67 cd03065 PDI_b_Calsequestrin_N 98.5 3.7E-07 8.1E-12 85.6 7.4 95 129-241 17-118 (120)
68 cd02952 TRP14_like Human TRX-r 98.5 5.2E-07 1.1E-11 84.4 8.2 72 137-215 20-102 (119)
69 cd03008 TryX_like_RdCVF Trypar 98.5 6.1E-07 1.3E-11 86.9 8.8 80 134-219 21-128 (146)
70 COG3118 Thioredoxin domain-con 98.5 6E-07 1.3E-11 94.9 9.4 90 137-244 42-132 (304)
71 cd03009 TryX_like_TryX_NRX Try 98.5 7E-07 1.5E-11 83.7 8.9 79 135-219 15-115 (131)
72 TIGR01295 PedC_BrcD bacterioci 98.4 5.5E-07 1.2E-11 84.5 8.1 85 128-219 13-105 (122)
73 PTZ00443 Thioredoxin domain-co 98.4 1.7E-06 3.6E-11 89.6 11.9 69 137-217 51-119 (224)
74 cd03001 PDI_a_P5 PDIa family, 98.4 8.5E-07 1.8E-11 79.0 8.2 75 128-213 7-82 (103)
75 cd02994 PDI_a_TMX PDIa family, 98.4 6E-07 1.3E-11 80.3 7.2 75 128-216 8-83 (101)
76 cd04791 LanC_SerThrkinase Lant 98.4 3.5E-05 7.7E-10 82.8 20.7 132 547-723 142-273 (321)
77 cd02992 PDI_a_QSOX PDIa family 98.3 1.4E-06 3E-11 80.6 7.1 77 128-215 8-90 (114)
78 cd03010 TlpA_like_DsbE TlpA-li 98.3 1.3E-06 2.8E-11 81.4 6.7 88 131-224 18-122 (127)
79 PRK14018 trifunctional thiored 98.3 1.1E-06 2.3E-11 100.8 7.3 94 137-242 55-173 (521)
80 PF07944 DUF1680: Putative gly 98.3 0.00011 2.4E-09 85.2 23.5 240 334-720 78-331 (520)
81 cd02957 Phd_like Phosducin (Ph 98.3 2.2E-06 4.8E-11 78.9 7.6 68 138-219 24-91 (113)
82 cd02964 TryX_like_family Trypa 98.3 2.9E-06 6.3E-11 80.0 8.5 82 132-219 11-115 (132)
83 PF13905 Thioredoxin_8: Thiore 98.3 2.6E-06 5.6E-11 75.2 7.3 76 138-216 1-95 (95)
84 cd02965 HyaE HyaE family; HyaE 98.2 2E-06 4.4E-11 79.4 6.1 87 121-219 10-98 (111)
85 COG4225 Predicted unsaturated 98.2 0.00017 3.6E-09 77.7 21.1 267 290-724 17-301 (357)
86 cd02967 mauD Methylamine utili 98.2 2.3E-06 5.1E-11 77.8 6.0 79 137-219 20-111 (114)
87 cd02966 TlpA_like_family TlpA- 98.2 2.5E-06 5.5E-11 75.7 5.9 87 130-219 11-113 (116)
88 PTZ00102 disulphide isomerase; 98.2 2.2E-06 4.8E-11 97.3 6.4 77 129-216 365-444 (477)
89 PHA02125 thioredoxin-like prot 98.1 5E-06 1.1E-10 71.1 6.6 57 142-219 2-58 (75)
90 cd03011 TlpA_like_ScsD_MtbDsbE 98.1 1.9E-06 4.1E-11 79.5 4.2 88 130-225 12-115 (123)
91 PTZ00102 disulphide isomerase; 98.1 3.9E-06 8.4E-11 95.3 7.4 77 128-215 39-118 (477)
92 TIGR01130 ER_PDI_fam protein d 98.1 4.5E-06 9.8E-11 93.8 7.8 77 128-216 8-87 (462)
93 TIGR02738 TrbB type-F conjugat 98.1 5.6E-06 1.2E-10 80.9 7.3 79 134-218 46-133 (153)
94 cd02987 Phd_like_Phd Phosducin 98.1 9.4E-06 2E-10 81.0 8.4 68 138-219 83-150 (175)
95 TIGR00411 redox_disulf_1 small 98.1 7.9E-06 1.7E-10 69.8 6.5 61 142-216 3-63 (82)
96 KOG0908 Thioredoxin-like prote 98.1 4E-06 8.7E-11 86.3 4.9 71 132-217 15-87 (288)
97 TIGR02740 TraF-like TraF-like 98.0 2E-05 4.4E-10 83.9 9.4 76 134-217 162-243 (271)
98 PRK03147 thiol-disulfide oxido 98.0 2.2E-05 4.7E-10 76.8 8.7 99 134-241 57-171 (173)
99 PF07470 Glyco_hydro_88: Glyco 98.0 0.00075 1.6E-08 73.7 21.4 241 334-703 85-335 (336)
100 cd02982 PDI_b'_family Protein 98.0 1.9E-05 4E-10 70.5 6.9 65 138-213 12-78 (103)
101 TIGR00424 APS_reduc 5'-adenyly 98.0 1.9E-05 4.2E-10 89.5 8.6 69 135-214 368-439 (463)
102 PLN02309 5'-adenylylsulfate re 97.9 1.5E-05 3.3E-10 90.3 7.5 72 133-214 360-433 (457)
103 TIGR01626 ytfJ_HI0045 conserve 97.9 5.4E-05 1.2E-09 76.1 9.0 97 118-225 44-169 (184)
104 TIGR00412 redox_disulf_2 small 97.8 2.5E-05 5.4E-10 67.1 5.0 65 143-225 3-67 (76)
105 PLN02919 haloacid dehalogenase 97.8 3.3E-05 7.1E-10 96.3 8.1 99 137-247 419-541 (1057)
106 cd03012 TlpA_like_DipZ_like Tl 97.8 5.5E-05 1.2E-09 70.6 7.3 84 130-219 15-121 (126)
107 TIGR02661 MauD methylamine deh 97.8 6.3E-05 1.4E-09 75.7 8.1 75 136-219 72-162 (189)
108 TIGR02187 GlrX_arch Glutaredox 97.8 7.3E-05 1.6E-09 76.7 8.5 76 128-216 122-198 (215)
109 cd02973 TRX_GRX_like Thioredox 97.8 5.5E-05 1.2E-09 62.6 5.9 63 142-219 3-65 (67)
110 cd03026 AhpF_NTD_C TRX-GRX-lik 97.7 8.6E-05 1.9E-09 66.0 6.3 74 132-220 5-79 (89)
111 TIGR02187 GlrX_arch Glutaredox 97.7 0.0001 2.2E-09 75.7 7.2 70 136-217 18-90 (215)
112 PF06662 C5-epim_C: D-glucuron 97.6 0.0023 5.1E-08 64.6 16.3 145 546-718 32-186 (189)
113 TIGR01130 ER_PDI_fam protein d 97.6 0.00014 3E-09 81.8 7.7 69 134-215 360-431 (462)
114 cd04434 LanC_like LanC-like pr 97.6 0.01 2.2E-07 63.7 21.3 147 549-722 104-250 (343)
115 cd04792 LanM-like LanM-like pr 97.5 0.0062 1.3E-07 74.5 21.9 251 365-722 475-733 (825)
116 PF08534 Redoxin: Redoxin; In 97.5 0.00049 1.1E-08 65.5 9.0 83 134-220 24-131 (146)
117 PRK13728 conjugal transfer pro 97.5 0.00029 6.3E-09 70.7 7.3 69 142-217 73-150 (181)
118 KOG2501 Thioredoxin, nucleored 97.5 0.00035 7.6E-09 68.1 7.5 89 128-219 23-131 (157)
119 PF07944 DUF1680: Putative gly 97.4 0.0018 3.9E-08 75.2 14.2 134 546-722 62-206 (520)
120 PTZ00062 glutaredoxin; Provisi 97.4 0.00034 7.3E-09 71.6 7.1 71 128-219 6-77 (204)
121 cd03007 PDI_a_ERp29_N PDIa fam 97.4 0.00093 2E-08 62.4 9.1 71 128-213 8-90 (116)
122 PF06662 C5-epim_C: D-glucuron 97.4 0.0047 1E-07 62.5 14.7 45 379-425 29-73 (189)
123 PF06917 Pectate_lyase_2: Peri 97.3 0.065 1.4E-06 60.7 23.7 315 367-721 60-467 (557)
124 cd02969 PRX_like1 Peroxiredoxi 97.3 0.0022 4.8E-08 63.0 11.3 81 137-220 24-126 (171)
125 PLN02399 phospholipid hydroper 97.3 0.0006 1.3E-08 71.3 7.1 22 135-156 96-117 (236)
126 cd02988 Phd_like_VIAF Phosduci 97.2 0.00066 1.4E-08 68.8 6.6 66 138-219 102-167 (192)
127 COG3533 Uncharacterized protei 97.2 0.032 7E-07 63.1 19.9 228 334-720 84-323 (589)
128 cd04793 LanC LanC is the cycla 97.1 0.075 1.6E-06 59.1 22.7 135 550-722 178-324 (382)
129 cd01659 TRX_superfamily Thiore 97.1 0.00058 1.3E-08 52.7 4.3 63 142-213 1-63 (69)
130 cd02990 UAS_FAF1 UAS family, F 97.1 0.0032 7E-08 60.4 9.9 88 127-215 6-108 (136)
131 PTZ00056 glutathione peroxidas 97.1 0.002 4.3E-08 65.7 9.0 19 137-155 38-56 (199)
132 COG4225 Predicted unsaturated 97.0 0.016 3.5E-07 62.8 14.8 122 579-707 98-223 (357)
133 cd03017 PRX_BCP Peroxiredoxin 96.9 0.0027 5.9E-08 59.7 7.8 79 137-219 22-125 (140)
134 KOG0190 Protein disulfide isom 96.8 0.0017 3.8E-08 73.9 6.3 77 128-216 32-111 (493)
135 PRK09437 bcp thioredoxin-depen 96.8 0.0041 8.9E-08 59.9 8.0 86 137-226 29-143 (154)
136 KOG0190 Protein disulfide isom 96.8 0.0018 3.8E-08 73.9 5.9 96 103-214 344-449 (493)
137 TIGR02180 GRX_euk Glutaredoxin 96.8 0.0037 8E-08 53.5 6.6 66 143-219 2-67 (84)
138 PF14595 Thioredoxin_9: Thiore 96.8 0.0011 2.4E-08 63.0 3.5 81 128-219 30-113 (129)
139 KOG0191 Thioredoxin/protein di 96.7 0.0023 5E-08 71.3 6.4 75 132-217 41-115 (383)
140 PLN02412 probable glutathione 96.7 0.0045 9.7E-08 61.1 7.5 19 137-155 28-46 (167)
141 PF00759 Glyco_hydro_9: Glycos 96.7 0.0068 1.5E-07 68.7 9.6 90 545-652 155-247 (444)
142 COG3533 Uncharacterized protei 96.6 0.1 2.2E-06 59.3 18.0 123 547-723 134-260 (589)
143 TIGR02540 gpx7 putative glutat 96.5 0.0062 1.3E-07 58.9 7.0 24 132-155 16-39 (153)
144 KOG4277 Uncharacterized conser 96.5 0.0016 3.5E-08 68.8 2.9 79 126-216 32-113 (468)
145 COG4403 LcnDR2 Lantibiotic mod 96.5 0.25 5.4E-06 59.5 20.9 223 336-659 597-832 (963)
146 cd00340 GSH_Peroxidase Glutath 96.5 0.0062 1.3E-07 58.9 6.4 22 134-156 18-39 (152)
147 cd02889 SQCY Squalene cyclase 96.4 0.45 9.9E-06 51.8 21.7 45 380-425 92-138 (348)
148 PF00578 AhpC-TSA: AhpC/TSA fa 96.4 0.0069 1.5E-07 55.5 6.4 21 137-157 24-45 (124)
149 TIGR03137 AhpC peroxiredoxin. 96.4 0.021 4.4E-07 57.5 10.0 96 137-242 30-153 (187)
150 PTZ00470 glycoside hydrolase f 96.4 0.37 7.9E-06 56.1 21.1 278 371-724 150-454 (522)
151 cd02968 SCO SCO (an acronym fo 96.3 0.011 2.5E-07 55.6 7.2 21 137-157 21-42 (142)
152 cd04434 LanC_like LanC-like pr 96.2 2 4.3E-05 46.0 25.0 131 550-722 165-297 (343)
153 cd03014 PRX_Atyp2cys Peroxired 96.2 0.012 2.6E-07 55.8 6.9 92 137-238 25-141 (143)
154 cd04792 LanM-like LanM-like pr 96.2 1.3 2.8E-05 54.4 26.2 129 549-722 648-778 (825)
155 PRK00522 tpx lipid hydroperoxi 96.2 0.021 4.5E-07 56.4 8.7 96 137-242 43-166 (167)
156 TIGR02196 GlrX_YruB Glutaredox 96.2 0.014 3.1E-07 47.9 6.3 62 142-219 2-63 (74)
157 KOG2787 Lanthionine synthetase 96.2 0.022 4.7E-07 61.2 9.0 85 541-655 274-361 (403)
158 PRK10382 alkyl hydroperoxide r 96.1 0.023 5E-07 57.4 8.8 99 137-242 30-153 (187)
159 cd03015 PRX_Typ2cys Peroxiredo 96.1 0.031 6.7E-07 55.2 9.5 81 136-220 27-136 (173)
160 PTZ00256 glutathione peroxidas 96.1 0.0094 2E-07 59.7 5.8 21 135-155 37-58 (183)
161 PF01532 Glyco_hydro_47: Glyco 96.1 0.27 5.9E-06 56.3 18.3 300 335-706 98-432 (452)
162 PLN03009 cellulase 96.0 0.2 4.3E-06 58.1 16.8 66 357-427 72-140 (495)
163 PLN02266 endoglucanase 96.0 0.37 8E-06 55.9 18.6 83 546-650 192-282 (510)
164 COG0526 TrxA Thiol-disulfide i 96.0 0.019 4E-07 49.8 6.5 60 138-209 32-95 (127)
165 PLN02613 endoglucanase 95.9 0.47 1E-05 55.0 18.9 83 545-648 173-257 (498)
166 PLN02171 endoglucanase 95.9 0.45 9.8E-06 56.5 19.1 85 547-651 179-268 (629)
167 TIGR02200 GlrX_actino Glutared 95.9 0.02 4.3E-07 48.0 5.9 63 142-219 2-65 (77)
168 cd03419 GRX_GRXh_1_2_like Glut 95.8 0.034 7.4E-07 47.3 7.3 64 142-218 2-65 (82)
169 PLN00119 endoglucanase 95.8 0.49 1.1E-05 54.6 18.6 85 547-648 180-265 (489)
170 PF05147 LANC_like: Lanthionin 95.7 0.0031 6.7E-08 68.4 0.5 247 379-723 7-260 (355)
171 cd02976 NrdH NrdH-redoxin (Nrd 95.7 0.025 5.5E-07 46.3 5.9 62 142-219 2-63 (73)
172 PLN02909 Endoglucanase 95.7 0.5 1.1E-05 54.5 18.0 79 547-647 183-264 (486)
173 PTZ00470 glycoside hydrolase f 95.7 0.057 1.2E-06 62.7 10.5 97 623-724 158-255 (522)
174 PLN02340 endoglucanase 95.6 0.2 4.4E-06 59.2 15.0 186 357-650 74-266 (614)
175 KOG2507 Ubiquitin regulatory p 95.6 0.095 2.1E-06 58.2 11.3 110 122-246 2-112 (506)
176 PF06110 DUF953: Eukaryotic pr 95.5 0.017 3.6E-07 54.3 4.4 80 128-215 9-101 (119)
177 PF01532 Glyco_hydro_47: Glyco 95.5 0.13 2.8E-06 59.0 12.3 154 544-723 77-243 (452)
178 TIGR01577 oligosac_amyl oligos 95.5 1.7 3.7E-05 51.8 22.1 148 545-723 415-572 (616)
179 PRK11509 hydrogenase-1 operon 95.4 0.021 4.5E-07 54.7 4.8 52 164-224 59-112 (132)
180 cd04794 euk_LANCL eukaryotic L 95.4 0.27 5.8E-06 53.9 14.3 78 550-657 230-307 (343)
181 PLN02420 endoglucanase 95.4 0.9 2E-05 53.0 19.0 89 547-650 190-278 (525)
182 PLN02345 endoglucanase 95.4 0.62 1.3E-05 53.6 17.5 82 547-646 145-228 (469)
183 PRK15000 peroxidase; Provision 95.3 0.078 1.7E-06 54.1 9.0 98 137-242 33-159 (200)
184 PLN02308 endoglucanase 95.3 1 2.2E-05 52.2 18.9 85 547-649 175-263 (492)
185 cd02971 PRX_family Peroxiredox 95.3 0.057 1.2E-06 50.5 7.3 22 137-158 21-43 (140)
186 KOG0191 Thioredoxin/protein di 95.2 0.018 3.8E-07 64.4 4.2 72 133-215 157-230 (383)
187 cd04794 euk_LANCL eukaryotic L 95.2 1.9 4.2E-05 47.2 20.0 95 616-722 161-255 (343)
188 cd03018 PRX_AhpE_like Peroxire 95.2 0.046 1E-06 51.9 6.4 79 137-219 26-129 (149)
189 PRK11657 dsbG disulfide isomer 95.0 0.079 1.7E-06 56.0 8.0 28 199-226 215-242 (251)
190 PRK13190 putative peroxiredoxi 94.9 0.13 2.8E-06 52.5 9.3 36 203-242 116-151 (202)
191 cd02892 SQCY_1 Squalene cyclas 94.7 6.1 0.00013 47.3 24.0 60 358-425 359-421 (634)
192 cd04793 LanC LanC is the cycla 94.7 1.5 3.2E-05 48.8 17.6 84 547-657 247-330 (382)
193 COG4833 Predicted glycosyl hyd 94.6 0.22 4.7E-06 52.6 9.9 123 527-657 110-249 (377)
194 KOG1752 Glutaredoxin and relat 94.6 0.1 2.3E-06 47.9 6.8 72 131-217 7-78 (104)
195 PF00462 Glutaredoxin: Glutare 94.2 0.12 2.6E-06 41.8 5.7 54 143-209 2-55 (60)
196 cd02066 GRX_family Glutaredoxi 94.2 0.15 3.1E-06 41.5 6.2 62 142-219 2-63 (72)
197 TIGR03143 AhpF_homolog putativ 94.1 0.1 2.2E-06 61.2 7.1 79 127-220 464-543 (555)
198 PRK10877 protein disulfide iso 94.0 0.18 3.8E-06 52.8 7.9 32 135-172 104-135 (232)
199 TIGR02189 GlrX-like_plant Glut 94.0 0.21 4.6E-06 45.2 7.4 63 142-217 10-72 (99)
200 PRK15317 alkyl hydroperoxide r 93.9 0.19 4.1E-06 58.4 8.7 94 108-219 85-182 (517)
201 PRK11200 grxA glutaredoxin 1; 93.9 0.34 7.4E-06 42.1 8.3 66 141-217 2-69 (85)
202 cd02970 PRX_like2 Peroxiredoxi 93.8 0.19 4.1E-06 47.4 7.1 70 137-217 22-93 (149)
203 PTZ00137 2-Cys peroxiredoxin; 93.7 0.32 6.9E-06 51.8 9.3 98 137-242 97-222 (261)
204 PF13728 TraF: F plasmid trans 93.7 0.23 5.1E-06 51.3 8.0 74 138-218 120-198 (215)
205 PRK13599 putative peroxiredoxi 93.6 0.19 4.1E-06 51.9 7.3 37 203-243 118-154 (215)
206 cd02892 SQCY_1 Squalene cyclas 93.4 15 0.00032 44.2 23.8 115 281-422 234-349 (634)
207 TIGR00365 monothiol glutaredox 93.3 0.33 7.2E-06 43.7 7.5 71 130-217 4-78 (97)
208 TIGR02183 GRXA Glutaredoxin, G 93.3 0.37 8E-06 42.3 7.5 62 142-217 2-68 (86)
209 PHA03050 glutaredoxin; Provisi 93.2 0.38 8.3E-06 44.3 7.9 65 142-217 15-80 (108)
210 PTZ00253 tryparedoxin peroxida 93.2 0.15 3.3E-06 51.7 5.7 80 137-220 35-143 (199)
211 cd03027 GRX_DEP Glutaredoxin ( 93.2 0.25 5.3E-06 41.6 6.1 55 142-209 3-57 (73)
212 PRK10606 btuE putative glutath 92.8 0.34 7.5E-06 48.9 7.4 77 132-215 19-102 (183)
213 TIGR02190 GlrX-dom Glutaredoxi 92.7 0.25 5.5E-06 42.4 5.5 61 142-219 10-70 (79)
214 PF06917 Pectate_lyase_2: Peri 92.6 0.48 1E-05 53.9 9.0 141 502-668 317-482 (557)
215 cd03028 GRX_PICOT_like Glutare 92.5 0.46 1E-05 42.0 7.2 64 138-217 7-74 (90)
216 PF06202 GDE_C: Amylo-alpha-1, 92.5 11 0.00024 42.0 19.8 113 316-431 91-225 (370)
217 TIGR02194 GlrX_NrdH Glutaredox 92.4 0.24 5.2E-06 41.7 5.0 53 143-209 2-54 (72)
218 KOG3414 Component of the U4/U6 92.2 0.34 7.4E-06 45.7 6.0 66 135-212 20-86 (142)
219 PF02966 DIM1: Mitosis protein 92.2 0.43 9.3E-06 45.5 6.7 94 135-242 17-117 (133)
220 TIGR03140 AhpF alkyl hydropero 92.1 0.51 1.1E-05 54.9 8.8 94 108-219 86-183 (515)
221 TIGR02739 TraF type-F conjugat 91.9 1.1 2.4E-05 47.6 10.3 72 139-217 151-227 (256)
222 PRK10638 glutaredoxin 3; Provi 91.7 0.55 1.2E-05 40.6 6.5 62 142-219 4-65 (83)
223 PRK13191 putative peroxiredoxi 91.5 1.1 2.4E-05 46.3 9.6 99 137-243 32-159 (215)
224 PLN02175 endoglucanase 91.3 8.4 0.00018 44.7 17.2 86 547-647 172-258 (484)
225 cd03418 GRX_GRXb_1_3_like Glut 91.2 0.6 1.3E-05 39.0 6.1 60 142-217 2-62 (75)
226 cd03016 PRX_1cys Peroxiredoxin 91.2 0.67 1.5E-05 47.2 7.5 19 139-157 26-45 (203)
227 TIGR01577 oligosac_amyl oligos 91.1 3.3 7.2E-05 49.4 14.4 144 547-723 301-453 (616)
228 PF13192 Thioredoxin_3: Thiore 90.7 0.39 8.5E-06 41.0 4.5 57 146-220 6-63 (76)
229 PRK13703 conjugal pilus assemb 90.7 1.8 3.9E-05 45.9 10.3 79 130-217 137-220 (248)
230 TIGR02181 GRX_bact Glutaredoxi 90.7 0.63 1.4E-05 39.5 5.8 59 143-217 2-60 (79)
231 PRK10329 glutaredoxin-like pro 90.5 0.65 1.4E-05 40.4 5.8 54 142-209 3-56 (81)
232 PF00759 Glyco_hydro_9: Glycos 90.3 8.3 0.00018 43.8 16.2 155 298-469 51-245 (444)
233 KOG3425 Uncharacterized conser 90.2 0.76 1.6E-05 43.2 6.1 52 128-185 12-77 (128)
234 KOG0911 Glutaredoxin-related p 89.6 0.13 2.8E-06 53.0 0.7 62 137-210 16-77 (227)
235 KOG2431 1, 2-alpha-mannosidase 89.5 20 0.00044 40.5 17.3 303 370-707 169-522 (546)
236 TIGR03463 osq_cycl 2,3-oxidosq 88.9 61 0.0013 39.1 26.9 107 281-415 233-340 (634)
237 KOG0912 Thiol-disulfide isomer 88.9 0.34 7.4E-06 52.1 3.3 65 137-210 12-79 (375)
238 TIGR01507 hopene_cyclase squal 88.9 26 0.00056 42.2 19.3 117 297-425 362-492 (635)
239 cd02896 complement_C3_C4_C5 Pr 88.5 40 0.00086 36.4 21.4 76 335-424 48-123 (297)
240 COG0695 GrxC Glutaredoxin and 88.5 1.3 2.8E-05 38.5 6.1 57 142-209 3-59 (80)
241 KOG2204 Mannosyl-oligosacchari 88.3 3.5 7.6E-05 47.7 10.9 97 622-723 264-362 (625)
242 cd03020 DsbA_DsbC_DsbG DsbA fa 88.2 0.4 8.6E-06 48.4 3.2 32 130-161 69-100 (197)
243 PRK13189 peroxiredoxin; Provis 87.8 1.3 2.8E-05 46.0 6.7 36 203-242 125-160 (222)
244 KOG2204 Mannosyl-oligosacchari 87.8 24 0.00052 41.2 16.9 271 382-724 264-560 (625)
245 COG4403 LcnDR2 Lantibiotic mod 87.6 12 0.00026 45.9 15.0 132 540-721 690-823 (963)
246 PF05592 Bac_rhamnosid: Bacter 86.3 14 0.0003 42.8 14.8 117 537-665 197-327 (509)
247 PRK12759 bifunctional gluaredo 86.1 1.1 2.3E-05 51.0 5.3 61 142-217 4-71 (410)
248 cd03029 GRX_hybridPRX5 Glutare 86.0 1.9 4E-05 36.1 5.5 59 142-217 3-61 (72)
249 TIGR02474 pec_lyase pectate ly 84.8 1.2 2.5E-05 48.2 4.6 40 384-424 48-87 (290)
250 PRK11097 endo-1,4-D-glucanase; 84.8 11 0.00025 42.2 12.5 128 586-724 74-212 (376)
251 TIGR01507 hopene_cyclase squal 84.7 1E+02 0.0022 37.3 24.8 45 379-425 380-424 (635)
252 cd02889 SQCY Squalene cyclase 83.9 9.3 0.0002 41.6 11.3 138 580-723 43-200 (348)
253 KOG2431 1, 2-alpha-mannosidase 83.7 6.9 0.00015 44.0 9.9 123 584-723 151-273 (546)
254 TIGR01787 squalene_cyclas squa 83.7 1E+02 0.0022 37.1 20.7 81 336-425 388-481 (621)
255 TIGR02474 pec_lyase pectate ly 83.3 58 0.0013 35.4 16.6 91 525-637 29-122 (290)
256 PLN02993 lupeol synthase 82.5 11 0.00024 46.0 12.1 83 336-425 513-611 (763)
257 PF05147 LANC_like: Lanthionin 82.3 5.5 0.00012 43.1 8.8 134 547-723 170-306 (355)
258 PTZ00062 glutaredoxin; Provisi 82.2 3.5 7.5E-05 42.4 6.7 70 131-217 106-179 (204)
259 TIGR01561 gde_arch glycogen de 82.0 34 0.00073 40.7 15.5 110 546-668 350-480 (575)
260 TIGR01535 glucan_glucosid gluc 81.1 22 0.00048 42.8 13.8 135 547-722 301-441 (648)
261 KOG1731 FAD-dependent sulfhydr 80.6 0.97 2.1E-05 52.4 2.2 71 139-218 58-131 (606)
262 KOG2430 Glycosyl hydrolase, fa 79.8 7.2 0.00016 42.6 8.2 66 579-654 324-393 (587)
263 PRK10824 glutaredoxin-4; Provi 79.7 10 0.00022 35.6 8.2 50 129-188 6-59 (115)
264 PRK10137 alpha-glucosidase; Pr 79.1 1.7E+02 0.0038 36.2 20.7 52 379-430 577-636 (786)
265 COG4833 Predicted glycosyl hyd 78.3 3.9 8.5E-05 43.5 5.5 88 545-664 47-136 (377)
266 PF09492 Pec_lyase: Pectic aci 77.1 2.7 5.8E-05 45.4 4.1 40 384-424 43-82 (289)
267 cd00688 ISOPREN_C2_like This g 76.3 95 0.0021 31.7 20.7 76 337-425 50-125 (300)
268 TIGR03463 osq_cycl 2,3-oxidosq 75.9 35 0.00076 41.1 13.4 134 547-703 310-466 (634)
269 cd02972 DsbA_family DsbA famil 75.7 11 0.00023 32.0 6.8 16 143-158 2-17 (98)
270 COG1999 Uncharacterized protei 75.0 7.7 0.00017 39.9 6.7 53 136-191 65-125 (207)
271 KOG2429 Glycosyl hydrolase, fa 74.4 38 0.00083 39.6 12.4 35 624-658 375-409 (622)
272 PRK10137 alpha-glucosidase; Pr 74.0 2.3E+02 0.005 35.1 22.7 46 623-668 582-634 (786)
273 KOG2430 Glycosyl hydrolase, fa 73.1 21 0.00046 39.1 9.5 95 542-655 183-283 (587)
274 PF06202 GDE_C: Amylo-alpha-1, 72.7 64 0.0014 36.1 13.8 136 583-724 50-206 (370)
275 cd03023 DsbA_Com1_like DsbA fa 70.7 4.3 9.3E-05 38.1 3.4 23 136-158 3-25 (154)
276 PF09492 Pec_lyase: Pectic aci 70.1 29 0.00063 37.7 9.8 102 534-657 33-146 (289)
277 PLN02308 endoglucanase 69.9 2.3E+02 0.0049 33.3 21.9 112 299-414 72-212 (492)
278 PLN02266 endoglucanase 68.1 2.2E+02 0.0047 33.6 17.0 123 579-721 130-282 (510)
279 PF05768 DUF836: Glutaredoxin- 68.1 10 0.00022 32.8 4.9 56 142-212 2-58 (81)
280 TIGR01787 squalene_cyclas squa 68.0 33 0.00071 41.2 10.7 55 357-424 475-529 (621)
281 PF05592 Bac_rhamnosid: Bacter 67.9 77 0.0017 36.7 13.6 195 503-724 108-315 (509)
282 cd00688 ISOPREN_C2_like This g 67.2 82 0.0018 32.1 12.4 128 281-423 50-179 (300)
283 PLN03012 Camelliol C synthase 66.8 39 0.00085 41.4 11.0 65 583-649 639-710 (759)
284 PF13848 Thioredoxin_6: Thiore 66.1 18 0.00039 35.1 6.9 93 111-216 69-164 (184)
285 PF01270 Glyco_hydro_8: Glycos 65.9 19 0.00041 39.9 7.7 100 547-663 116-217 (342)
286 cd03051 GST_N_GTT2_like GST_N 64.4 19 0.00041 29.3 5.7 62 144-218 3-64 (74)
287 PLN02345 endoglucanase 63.4 2.4E+02 0.0052 32.9 16.1 118 579-717 82-228 (469)
288 cd02890 PTase Protein prenyltr 61.9 1.1E+02 0.0023 32.6 12.3 122 281-425 45-167 (286)
289 cd02894 GGTase-II Geranylgeran 61.9 2.3E+02 0.0049 30.4 19.8 69 585-668 198-268 (287)
290 cd03060 GST_N_Omega_like GST_N 61.3 27 0.00058 28.8 6.1 59 144-218 3-61 (71)
291 PF04685 DUF608: Protein of un 61.2 19 0.00041 40.3 6.6 104 545-666 100-217 (365)
292 cd03019 DsbA_DsbA DsbA family, 61.0 5.7 0.00012 38.6 2.2 23 137-159 14-36 (178)
293 PF07678 A2M_comp: A-macroglob 60.6 1.1E+02 0.0024 32.1 11.9 61 354-424 9-69 (246)
294 PRK11097 endo-1,4-D-glucanase; 60.3 72 0.0016 36.0 10.9 104 537-656 109-215 (376)
295 PF02630 SCO1-SenC: SCO1/SenC; 60.3 6.3 0.00014 39.2 2.4 54 136-192 50-110 (174)
296 PLN00119 endoglucanase 59.0 3.2E+02 0.0069 32.1 16.1 116 579-718 117-264 (489)
297 PF13417 GST_N_3: Glutathione 58.0 37 0.0008 28.4 6.5 58 145-219 2-59 (75)
298 PLN03012 Camelliol C synthase 57.4 4.6E+02 0.01 32.5 22.5 36 379-417 418-453 (759)
299 cd03036 ArsC_like Arsenate Red 57.0 12 0.00027 34.3 3.6 59 144-216 3-62 (111)
300 PF13249 Prenyltrans_2: Prenyl 56.3 26 0.00057 31.2 5.6 28 396-424 85-112 (113)
301 PLN02171 endoglucanase 55.6 4.5E+02 0.0097 31.9 17.0 120 579-721 116-267 (629)
302 PF06053 DUF929: Domain of unk 54.7 6.9 0.00015 41.5 1.7 60 136-215 56-117 (249)
303 PRK13271 treA trehalase; Provi 54.5 2.7E+02 0.0057 33.3 14.7 130 541-701 337-472 (569)
304 PRK13270 treF trehalase; Provi 54.4 3.2E+02 0.007 32.5 15.3 129 541-701 347-481 (549)
305 cd03040 GST_N_mPGES2 GST_N fam 54.0 23 0.00049 29.6 4.5 61 143-219 3-64 (77)
306 KOG2787 Lanthionine synthetase 53.8 49 0.0011 36.4 7.8 116 579-722 241-357 (403)
307 PF04685 DUF608: Protein of un 53.4 57 0.0012 36.6 8.8 39 376-414 95-137 (365)
308 PLN02909 Endoglucanase 51.5 4.6E+02 0.01 30.7 16.5 117 578-718 119-264 (486)
309 cd02977 ArsC_family Arsenate R 51.5 14 0.00031 33.3 3.0 61 143-217 2-63 (105)
310 cd00570 GST_N_family Glutathio 51.4 47 0.001 25.8 5.8 59 144-218 3-61 (71)
311 PF01204 Trehalase: Trehalase; 51.4 1.6E+02 0.0036 34.5 12.4 96 539-656 303-402 (512)
312 COG3408 GDB1 Glycogen debranch 50.6 1.3E+02 0.0029 36.3 11.7 119 548-680 343-483 (641)
313 TIGR00162 conserved hypothetic 49.8 2.9E+02 0.0064 28.0 12.5 140 110-267 15-165 (188)
314 PF13462 Thioredoxin_4: Thiore 49.6 23 0.00051 33.6 4.4 44 136-181 10-54 (162)
315 cd03031 GRX_GRX_like Glutaredo 49.3 30 0.00065 33.8 5.0 30 149-188 15-45 (147)
316 PRK10954 periplasmic protein d 48.9 23 0.00049 36.1 4.4 43 138-181 37-80 (207)
317 PLN02175 endoglucanase 48.7 2.1E+02 0.0046 33.5 12.5 113 299-414 68-209 (484)
318 KOG3760 Heparan sulfate-glucur 47.3 1.3E+02 0.0027 34.1 9.8 57 596-652 528-586 (594)
319 cd02897 A2M_2 Proteins similar 46.3 70 0.0015 34.2 7.9 77 336-424 46-122 (292)
320 PF01270 Glyco_hydro_8: Glycos 45.4 1.7E+02 0.0036 32.4 10.8 127 586-723 75-207 (342)
321 KOG0366 Protein geranylgeranyl 45.4 4.3E+02 0.0093 28.6 14.6 72 586-670 213-284 (329)
322 PRK01655 spxA transcriptional 44.2 25 0.00055 33.4 3.6 60 142-215 2-62 (131)
323 PRK12559 transcriptional regul 41.5 26 0.00056 33.4 3.2 61 142-216 2-63 (131)
324 KOG0365 Beta subunit of farnes 40.0 4.5E+02 0.0097 29.6 12.4 124 276-423 113-238 (423)
325 PF04545 Sigma70_r4: Sigma-70, 39.9 47 0.001 25.7 4.0 27 500-526 23-49 (50)
326 cd02983 P5_C P5 family, C-term 39.0 82 0.0018 29.9 6.2 43 165-215 48-93 (130)
327 PF00837 T4_deiodinase: Iodoth 38.7 62 0.0014 34.2 5.7 20 135-154 99-118 (237)
328 COG4545 Glutaredoxin-related p 38.2 58 0.0013 28.4 4.4 64 139-219 3-78 (85)
329 TIGR01617 arsC_related transcr 36.6 55 0.0012 30.2 4.6 59 144-216 3-62 (117)
330 PF05426 Alginate_lyase: Algin 36.2 5.2E+02 0.011 26.9 14.3 35 376-410 52-86 (272)
331 PLN02993 lupeol synthase 35.6 2E+02 0.0043 35.6 10.1 131 547-703 422-579 (763)
332 cd02896 complement_C3_C4_C5 Pr 35.6 3.2E+02 0.0068 29.4 10.9 116 283-428 170-286 (297)
333 KOG3760 Heparan sulfate-glucur 34.7 2.9E+02 0.0062 31.4 10.1 142 545-720 418-583 (594)
334 PF02114 Phosducin: Phosducin; 33.5 72 0.0016 34.2 5.4 65 139-218 147-212 (265)
335 TIGR02177 PorB_KorB 2-oxoacid: 33.3 2E+02 0.0043 31.3 8.7 99 126-249 164-268 (287)
336 cd03041 GST_N_2GST_N GST_N fam 32.7 62 0.0013 27.2 3.9 63 143-219 3-65 (77)
337 PF03200 Glyco_hydro_63: Manno 32.6 68 0.0015 39.8 5.6 54 542-607 560-613 (801)
338 COG1225 Bcp Peroxiredoxin [Pos 32.4 1.8E+02 0.004 28.8 7.6 50 131-182 23-73 (157)
339 TIGR01535 glucan_glucosid gluc 30.9 1.1E+03 0.023 28.9 22.3 159 234-415 209-385 (648)
340 PLN03009 cellulase 30.6 9.4E+02 0.02 28.3 18.1 146 547-719 90-265 (495)
341 TIGR02393 RpoD_Cterm RNA polym 30.5 1E+02 0.0022 32.0 5.9 28 500-527 199-226 (238)
342 PF01204 Trehalase: Trehalase; 30.4 80 0.0017 37.1 5.5 44 626-669 317-364 (512)
343 COG3387 SGA1 Glucoamylase and 29.9 1.1E+03 0.023 28.6 15.3 207 381-654 289-513 (612)
344 KOG1672 ATP binding protein [P 29.7 76 0.0016 32.6 4.4 73 128-217 75-150 (211)
345 PF13243 Prenyltrans_1: Prenyl 29.7 13 0.00029 33.1 -0.8 36 388-424 31-66 (109)
346 PRK05778 2-oxoglutarate ferred 29.4 2.2E+02 0.0048 31.1 8.4 56 124-180 179-234 (301)
347 KOG2603 Oligosaccharyltransfer 28.9 1.8E+02 0.0039 32.0 7.4 75 136-221 58-145 (331)
348 TIGR03143 AhpF_homolog putativ 28.9 3.1E+02 0.0066 32.4 10.1 92 135-244 362-456 (555)
349 cd03032 ArsC_Spx Arsenate Redu 28.8 76 0.0016 29.2 4.1 61 143-217 3-64 (115)
350 cd03037 GST_N_GRX2 GST_N famil 28.6 93 0.002 25.4 4.2 59 144-219 3-61 (71)
351 cd03059 GST_N_SspA GST_N famil 28.6 1.4E+02 0.0029 24.3 5.2 51 144-208 3-53 (73)
352 PRK13271 treA trehalase; Provi 28.3 93 0.002 37.1 5.5 42 628-669 351-396 (569)
353 PF03792 PBC: PBC domain; Int 27.9 4.3E+02 0.0094 27.1 9.4 134 152-298 34-169 (191)
354 PRK13272 treA trehalase; Provi 27.3 8.6E+02 0.019 29.0 13.1 127 543-701 340-472 (542)
355 TIGR00161 conserved hypothetic 27.2 5.7E+02 0.012 26.8 10.7 130 118-268 87-222 (238)
356 cd03035 ArsC_Yffb Arsenate Red 27.1 1E+02 0.0023 28.1 4.6 44 143-196 2-46 (105)
357 TIGR01561 gde_arch glycogen de 26.6 1.1E+03 0.023 28.4 14.0 104 617-724 345-465 (575)
358 PRK05901 RNA polymerase sigma 26.5 1.2E+02 0.0025 35.8 5.9 46 460-527 452-497 (509)
359 COG3408 GDB1 Glycogen debranch 25.6 4.8E+02 0.01 31.7 11.0 136 583-724 303-458 (641)
360 PLN02613 endoglucanase 25.6 1.2E+03 0.025 27.6 16.5 119 579-719 112-257 (498)
361 cd03055 GST_N_Omega GST_N fami 25.6 2.1E+02 0.0046 24.7 6.1 61 142-218 19-79 (89)
362 PF02011 Glyco_hydro_48: Glyco 25.1 6.7E+02 0.014 29.9 11.3 111 535-661 395-529 (619)
363 PHA03075 glutaredoxin-like pro 24.8 98 0.0021 29.3 3.9 36 139-181 2-37 (123)
364 cd03045 GST_N_Delta_Epsilon GS 24.7 1.9E+02 0.0042 23.5 5.5 54 144-208 3-56 (74)
365 PRK05949 RNA polymerase sigma 24.3 2.1E+02 0.0046 31.5 7.2 46 460-527 271-316 (327)
366 PRK07405 RNA polymerase sigma 24.0 2.2E+02 0.0047 31.2 7.2 29 499-527 278-306 (317)
367 PRK07921 RNA polymerase sigma 23.8 2.2E+02 0.0048 31.4 7.2 46 460-527 267-312 (324)
368 PF08281 Sigma70_r4_2: Sigma-7 23.7 1.1E+02 0.0023 23.9 3.5 26 500-525 29-54 (54)
369 PLN02710 farnesyltranstransfer 23.4 8.1E+02 0.018 28.4 11.7 22 404-426 192-213 (439)
370 PLN02420 endoglucanase 23.3 1.3E+03 0.028 27.4 17.3 146 547-721 103-278 (525)
371 PRK13344 spxA transcriptional 22.8 1.2E+02 0.0026 28.9 4.3 44 143-196 3-47 (132)
372 PRK07598 RNA polymerase sigma 22.3 2E+02 0.0042 33.1 6.5 55 452-528 343-401 (415)
373 PLN02567 alpha,alpha-trehalase 21.7 1.8E+02 0.0039 34.6 6.3 103 543-658 328-441 (554)
374 TIGR02997 Sig70-cyanoRpoD RNA 21.5 2.1E+02 0.0045 30.9 6.4 51 453-525 243-297 (298)
375 TIGR02957 SigX4 RNA polymerase 20.9 1.9E+02 0.0041 30.9 5.8 55 500-562 127-181 (281)
376 PF08765 Mor: Mor transcriptio 20.6 86 0.0019 28.7 2.7 29 501-529 76-104 (108)
377 PF07319 DnaI_N: Primosomal pr 20.2 63 0.0014 29.0 1.7 20 154-173 22-41 (94)
378 COG3413 Predicted DNA binding 20.2 1.9E+02 0.0041 29.6 5.5 50 459-527 159-208 (215)
379 PF04967 HTH_10: HTH DNA bindi 20.2 1.5E+02 0.0032 24.1 3.6 28 499-526 25-52 (53)
No 1
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=100.00 E-value=3.6e-155 Score=1247.85 Aligned_cols=609 Identities=60% Similarity=1.020 Sum_probs=568.1
Q ss_pred cccCccchhhcccCCCCCC----CCCCcccccccccCCChhhhcccCCCCccccchHHHHHHHhhcCCcEEEEEeccCCh
Q 004888 76 RPIHPYKVVAMAERTPAST----SHSRNKHTNRLAAEHSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCH 151 (725)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~NrL~~e~spyl~~ha~~~V~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~ 151 (725)
|++..++++.|+.++..+. |.+. +..|||+.++|||++|||.|||+|++|++||+++|++|||||||++|+++||
T Consensus 47 Rs~~~~s~~pm~~gg~~sh~sS~~~~v-~~~nRli~skspyllqhaynpvdwypwgqeaf~kar~enkpifLsvgystch 125 (786)
T KOG2244|consen 47 RSIASLSTLPMRRGGVRSHNSSFSSPV-PPLNRLISSKSPYLLQHAYNPVDWYPWGQEAFNKARAENKPIFLSVGYSTCH 125 (786)
T ss_pred cccccccccccccCceecCCCCccCCC-CccccccccCCcchhhhccCCcccCcchHHHHHHHHhcCCCEEEEcccccch
Confidence 4566688888998885554 2222 3469999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCccccccccCCCCCCCc
Q 004888 152 WCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGR 231 (725)
Q Consensus 152 ~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~~~tY~p~~~~~~~ 231 (725)
|||+||+|+|+|++++++||++||.||||||||||+|+.||.++++..|.||||+.||||||.+|+.+||||||++.+|+
T Consensus 126 wchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGWPmsV~LTPdL~PlvgGTYFPP~d~~g~ 205 (786)
T KOG2244|consen 126 WCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGWPMSVFLTPDLKPLVGGTYFPPNDNYGR 205 (786)
T ss_pred heeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCCceeEEeCCCcccccCCcccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhchHHHHHhHHHHHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCCC
Q 004888 232 PGFKTILRKVKDAWDKKRDMLAQSGAFAIEQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYDSRFGGFGSAPKFPR 311 (725)
Q Consensus 232 ~~F~~~L~~i~~~~~~~~~~l~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~GGfg~apKFP~ 311 (725)
++|.++|++|+++|+++|+.+++.+..+++.|++++.+.++. =..+++++...++.++||||.+||||.
T Consensus 206 ~gF~TvL~~I~~~w~~kr~tllet~~~~is~ls~al~peaa~-----------g~~~~ekl~e~i~~~~qGfg~apKFP~ 274 (786)
T KOG2244|consen 206 PGFKTVLKKIKDAWNSKRDTLLETGTYAISELSKALSPEAAT-----------GDNRAEKLSEGISREAQGFGEAPKFPK 274 (786)
T ss_pred ccHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHhhcCccccc-----------cchhHHHHHHHHHHHhhhhccCCCCCC
Confidence 999999999999999999999999998988888665432111 125678899999999999999999999
Q ss_pred hhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHH
Q 004888 312 PVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLD 391 (725)
Q Consensus 312 ~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~ma~gGi~D~v~GGF~RYs~D~~W~vPHFEKMLyDNA~Ll~~ya~ 391 (725)
+..|.||+.+... +++++.+.|+.+||+.|+.|||||||||||||||||++|++||||||||||+||+.+|++
T Consensus 275 ~~~L~FLf~~~lt-------~k~~d~~~Mvl~TL~~manGGihDHIg~GFhRYsv~~~WHvpHFEKMLYDQ~QL~~aysd 347 (786)
T KOG2244|consen 275 ACDLDFLFTFNLT-------SKADDEKSMVLFTLQGMANGGIHDHIGGGFHRYSVDECWHVPHFEKMLYDQGQLANAYSD 347 (786)
T ss_pred ccccceeeeeccc-------ccCcHHHHHHHHHHHHHhcCCccccccCceeeccccccccchhHHHHHhhHHHHHHHHHh
Confidence 9999999987542 346799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCccccccccccCcceEEechHHHHHHhhhh-------HHHH
Q 004888 392 AFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH-------AILF 464 (725)
Q Consensus 392 Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~lg~~-------~~l~ 464 (725)
||++|+|+.|..+|++|++||.++|.+|+||||+++||||.|.+++|.++|||||+||.+||+++|||. ++++
T Consensus 348 afklT~de~y~~va~~I~qYl~rdlsh~~GGfysaEDADSlp~h~~k~k~EGAfyaWt~dEIqqll~e~~i~p~~~fdl~ 427 (786)
T KOG2244|consen 348 AFKLTKDEMYSYVARDILQYLRRDLSHPEGGFYSAEDADSLPFHGAKRKKEGAFYAWTSDEIQQLLGENAIGPASLFDLF 427 (786)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHhccCCCCCcccccccCCCcccccccccccceEEeeHHHHHHHhCCCCCCcchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999975 4999
Q ss_pred HHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCCCCCCcchhhh
Q 004888 465 KEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVS 544 (725)
Q Consensus 465 ~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~e~~~~~l~~~r~kL~~~R~~R~~P~lDdKiits 544 (725)
+.||||++.||+ ++.+||||++.|||||+++.+.++.|..+++++++++++|.+++++|+++|.+||+|++|+|||++
T Consensus 428 a~hygvk~sGnv--s~ssDPhgel~gkNVL~vr~s~e~taanf~lsve~~kkll~e~~e~L~~aR~kRPkPHLDsKii~s 505 (786)
T KOG2244|consen 428 AEHYGVKKSGNV--SSSSDPHGELAGKNVLIVRNSTEATAANFSLSVEKYKKLLGECREKLFDARLKRPKPHLDSKIIVS 505 (786)
T ss_pred HHHcCCCCCCCC--CCCCCCcccccCceEEEEecchHhhHhhccccHHHHHHHHHHHHHHHHHHhhcCCCCCccchheee
Confidence 999999999995 689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEE-EecCCC----------C
Q 004888 545 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQH-SFRNGP----------S 613 (725)
Q Consensus 545 WNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~-s~~~g~----------~ 613 (725)
|||+||++|++|+++++.+ ++|++.|..+++|+.++|+|...+.|.+ +.++|. .
T Consensus 506 WnGLviSgl~kag~~~~a~---------------~~y~~~a~~~a~fl~k~m~d~~eklliR~scY~ga~g~ve~~n~~~ 570 (786)
T KOG2244|consen 506 WNGLVISGLAKAGKILKAE---------------PEYTKYAFPVANFLPKDMIDVAEKLLIRGSCYDGASGRVEHSNRPS 570 (786)
T ss_pred ccchhhHHHHHHHHHhhcC---------------HHHHHHHHHHHhhhhhhhhchhhhheeecccccCCCcceeccCCcc
Confidence 9999999999999999972 6999999999999999999988777777 544432 1
Q ss_pred CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCChHHHH
Q 004888 614 KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVS 693 (725)
Q Consensus 614 ~~~~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~ 693 (725)
..++|++||||+|.|||+||+++|+.+||+||.+|+++++.+||| +||||.+..+++.+++|.|+++||++||+|||+
T Consensus 571 ~~~~FldDYAFlI~gLLDlYea~~~~e~LkwA~~LQdtqdklFWd--gggYF~Se~~~~~v~vRlkeDhDGAEPs~nSVs 648 (786)
T KOG2244|consen 571 KAPAFLDDYAFLISGLLDLYEAGGGIEWLKWAIKLQDTQDKLFWD--GGGYFISEKTDEDVSVRLKEDHDGAEPSGNSVS 648 (786)
T ss_pred ccchhhhhHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHheec--CCceeeeeccCCCcceeeccccCCCCCCccchh
Confidence 345799999999999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCchHHHHHHHHHHHHhhC
Q 004888 694 VINLVRLASIVAGSKSDYYRQNAEHSLYLRQD 725 (725)
Q Consensus 694 a~~LlrL~~~t~~~~~~~y~~~A~~~l~~~~~ 725 (725)
|+||+||+.+++. +.|++.|.++|+.|++
T Consensus 649 ahNLvrL~~~~~~---e~yl~ka~~ll~~fse 677 (786)
T KOG2244|consen 649 AHNLVRLASIVAA---ESYLNKAHRLLAVFSE 677 (786)
T ss_pred hhhHHHHHHHhhH---HHHHHHHHHHHHHHHH
Confidence 9999999999986 7999999999999874
No 2
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-154 Score=1293.51 Aligned_cols=564 Identities=48% Similarity=0.847 Sum_probs=541.0
Q ss_pred ccccccccCCChhhhcccCCCCccccchHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEE
Q 004888 100 KHTNRLAAEHSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKV 179 (725)
Q Consensus 100 ~~~NrL~~e~spyl~~ha~~~V~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~Vkv 179 (725)
.++|||++|+||||+||++|||+|++|++|||++||++||||||+|||+||||||||++|+|+||+|+++||++||+|||
T Consensus 5 ~~~NrL~~e~SpYL~~ha~nPV~W~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKV 84 (667)
T COG1331 5 SMPNRLINEKSPYLLQHAHNPVDWYPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKV 84 (667)
T ss_pred CcCccCccCCCHHHHhccCCCccccccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCccccccccCCCCCCCcchHHHHHHHHHHHHhhchHHHHHhHHHH
Q 004888 180 DREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDKKRDMLAQSGAFA 259 (725)
Q Consensus 180 D~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i~~~~~~~~~~l~~~a~~~ 259 (725)
|+|||||||++||+++|+++|+||||++|||||||+||+++||+|+++++|+|+|+++|++|.+.|+++|++++++|+.+
T Consensus 85 DREERPDvD~~Ym~~~q~~tG~GGWPLtVfLTPd~kPFfagTY~P~e~r~g~pGf~~lL~~i~~~W~edr~~~~~~a~~~ 164 (667)
T COG1331 85 DREERPDVDSLYMNASQAITGQGGWPLTVFLTPDGKPFFAGTYFPKEDRYGRPGFKQLLEAIRETWREDREELLQSAERV 164 (667)
T ss_pred ChhhccCHHHHHHHHHHHhccCCCCceeEEECCCCceeeeeeecCCcccCCCcCHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCCChhHHHHHHHhhhhccccCCCCCcHHHHH
Q 004888 260 IEQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQK 339 (725)
Q Consensus 260 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~GGfg~apKFP~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 339 (725)
.+.++....+. .+..++++.+++++++|.+.||++|||||++||||+|+.+.|||+++.+++ ++++++
T Consensus 165 ~~~l~~~~~~~-----~~~~l~~~~l~~~~~~l~~~~D~~~GGfg~~pKFP~~~~l~~Llr~~~~~~-------d~~~~~ 232 (667)
T COG1331 165 LEALEGLARPS-----AGEELDEEVLDRAAEALARSFDREYGGFGSAPKFPPPHLLLFLLRYSLRTG-------DERALD 232 (667)
T ss_pred HHHHHhccCCC-----ccccCChHHHHHHHHHHHHhcchhhCCcCCCCCCCChHHHHHHHHHHHhhC-------CHHHHH
Confidence 99998755221 124556788999999999999999999999999999999999999987643 379999
Q ss_pred HHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCC
Q 004888 340 MVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGP 419 (725)
Q Consensus 340 ~~~~TL~~ma~gGi~D~v~GGF~RYs~D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~ 419 (725)
|+++||++|+.||||||+||||||||||+.|.||||||||||||+|+.+|++||+.|||++|+++|++|++||+++|++|
T Consensus 233 ~~~~TL~~ma~GGIyDhlgGGF~RYStD~~WlvPHFEKMLyDnA~l~~~y~~ay~~tgd~~y~~~a~~i~~~l~rel~sp 312 (667)
T COG1331 233 MVLRTLDAMARGGIYDHLGGGFFRYSTDREWLVPHFEKMLYDNALLLRAYAEAYRATGDDLYRRAAEGILDYLLRELYSP 312 (667)
T ss_pred HHHHHHHHHHccCCccccCCceeeeecCCceechhHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeccCCCccccccccccCcceEEechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCC
Q 004888 420 GGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELND 499 (725)
Q Consensus 420 ~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~lg~~~~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~ 499 (725)
+||||+|+|||+. ++||+||+||.+||+.+||+++++|+++|+|+++|| |+|+||||+..+
T Consensus 313 ~ggFyss~DAD~~-------g~EG~~Y~Ws~eEi~~~Lg~d~~~~~~~f~vs~~Gn------------feGrnvL~~~~~ 373 (667)
T COG1331 313 EGGFYSSLDADSD-------GEEGKYYTWSVEELKEVLGEDAELACKYFDVSEEGN------------FEGRNVLHVPGP 373 (667)
T ss_pred CCceeecccccCc-------ccCCCeeecCHHHHHHHhcccHHHHHHHcccCCCCC------------cCCceeecccCc
Confidence 9999999999995 589999999999999999999999999999999999 479999999988
Q ss_pred chHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCCCCCCcchhhhcHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChH
Q 004888 500 SSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRK 579 (725)
Q Consensus 500 ~~~~a~~~g~~~e~~~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~ 579 (725)
.++ + ++++.+.++.+|+||++.|.+|++|++||||+|+|||+||.||++|++++|| +
T Consensus 374 ~~~-~------~~~~~~~l~~~r~kL~~~R~~R~~P~~Ddkvlt~wNglmi~aLa~a~~~~~d----------------~ 430 (667)
T COG1331 374 LEE-A------IEEAEEKLERAREKLLAAREKRKQPSRDDKVLTDWNGLMIAALAEAGRVLGD----------------P 430 (667)
T ss_pred hhh-h------hhhhHHHHHHHHHHHHHHHHhCCCCCCCcceeeccHHHHHHHHHHHHHHcCC----------------h
Confidence 765 2 7888999999999999999999999999999999999999999999999998 8
Q ss_pred HHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc
Q 004888 580 EYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDR 659 (725)
Q Consensus 580 ~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~ 659 (725)
+|++.|+++++||.+.+++ ++|.|.+++|.....++++|||++|.|+++||++|+|.+||+.|++|++.++..|||+
T Consensus 431 ~~l~~A~~~~~fi~~~l~~---~rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~t~d~~yL~~A~~L~~~~i~~f~d~ 507 (667)
T COG1331 431 EYLEAAERAADFILDNLYV---DRLLRRYRGGEAAVAGLLEDYAFLILGLLALYEATGDLAYLEKAIELADEAIADFWDD 507 (667)
T ss_pred HHHHHHHHHHHHHHHhhcc---cchheeeecCcccccccchhHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999997 3899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhh
Q 004888 660 EGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLYLRQ 724 (725)
Q Consensus 660 ~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~t~~~~~~~y~~~A~~~l~~~~ 724 (725)
+ ||||+++..++.+++|.++..|+++||+||++|.+|++|+.+||+ ..|.+.|+++|++|.
T Consensus 508 ~-gGf~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~---~~y~e~A~~~L~a~~ 568 (667)
T COG1331 508 E-GGFYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTGD---ARYLEAAEDILQAFA 568 (667)
T ss_pred C-CCcccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCc---hhHHHHHHHHHHHHH
Confidence 8 679999999999999999999999999999999999999999997 789999999999875
No 3
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=100.00 E-value=3.6e-54 Score=416.97 Aligned_cols=163 Identities=61% Similarity=1.166 Sum_probs=134.4
Q ss_pred ccccccCCChhhhcccCCCCccccchHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcC
Q 004888 102 TNRLAAEHSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDR 181 (725)
Q Consensus 102 ~NrL~~e~spyl~~ha~~~V~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ 181 (725)
+|||+.|+||||+||+++||+|++|++||+++||+++|||||+||++||||||+|++++|+||+|+++||++||+||||+
T Consensus 1 ~N~l~~~~Spyl~~ha~~~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDr 80 (163)
T PF03190_consen 1 TNRLANSKSPYLRQHAHNPVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDR 80 (163)
T ss_dssp --GGGG---HHHHTTTTSSS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEET
T ss_pred CCccccCCCHHHHHhccCCCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEecc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCccccccccCCCCCCCcchHHHHHHHHHHHHhhchHHHHHhHHHHHH
Q 004888 182 EERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDKKRDMLAQSGAFAIE 261 (725)
Q Consensus 182 ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i~~~~~~~~~~l~~~a~~~~~ 261 (725)
|++||++..||.++|+++|.+|||++|||||||+||+++||+||++.+|+++|+++|++|++.|+++|++|++.|++|.+
T Consensus 81 ee~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i~~~w~~~~~~~~~~a~~i~~ 160 (163)
T PF03190_consen 81 EERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERIAELWKENREQVEESADEILE 160 (163)
T ss_dssp TT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EEEEESS--SS-BTTB--HHHHHHHHHHHHHHSHHHHHHHHHHT-S
T ss_pred ccCccHHHHHHHHHHHhcCCCCCCceEEECCCCCeeeeeeecCCCCCCCCccHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHH
Q 004888 262 QLS 264 (725)
Q Consensus 262 ~l~ 264 (725)
+|+
T Consensus 161 ~l~ 163 (163)
T PF03190_consen 161 ALQ 163 (163)
T ss_dssp HH-
T ss_pred hhC
Confidence 774
No 4
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.97 E-value=1e-31 Score=251.72 Aligned_cols=123 Identities=73% Similarity=1.394 Sum_probs=119.4
Q ss_pred ccchHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCC
Q 004888 124 FAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGG 203 (725)
Q Consensus 124 ~~~~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G 203 (725)
++|+++|+++|+++||||||+|+++||+|||+|++++|.||+|++.||++||+|+||+++.|++.+.|++..+..+|++|
T Consensus 1 ~~~~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G 80 (124)
T cd02955 1 YPWGEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGG 80 (124)
T ss_pred CCCCHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999998888889999
Q ss_pred cCcEEEecCCCCccccccccCCCCCCCcchHHHHHHHHHHHHh
Q 004888 204 WPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWD 246 (725)
Q Consensus 204 ~P~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i~~~~~ 246 (725)
+|++||++|+|+++++++|+|+++.++.++|.++|++|.+.|.
T Consensus 81 ~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (124)
T cd02955 81 WPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIRELWR 123 (124)
T ss_pred CCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999996
No 5
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=99.93 E-value=5.9e-24 Score=233.37 Aligned_cols=296 Identities=16% Similarity=0.137 Sum_probs=226.0
Q ss_pred CCcccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCC-CceeeeccCC
Q 004888 352 GIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPG-GEIFSAEDAD 430 (725)
Q Consensus 352 Gi~D~v~GGF~RYs~D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~-Ggfysa~DAD 430 (725)
-..|+..|||+- +.|.++.+..-.|.+|.||++|++|+.+|++++++.|++.|+++++||.+++++++ |||+++.|.|
T Consensus 26 ~~~d~~~gg~~~-~l~~~g~~~~~~k~~~~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~ 104 (384)
T cd00249 26 AGLDREAGGFFE-CLDRDGQPFDTDRRLWLQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQD 104 (384)
T ss_pred cCCCCCCCCeEE-EECCCCCCCCCCCeEEEecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCC
Confidence 357888999996 77888887667999999999999999999999999999999999999999999998 9999999999
Q ss_pred CccccccccccCcceEEechHHHHHHhhhh--HHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcC
Q 004888 431 SAETEGATRKKEGAFYVWTSKEVEDILGEH--AILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLG 508 (725)
Q Consensus 431 s~~~~~~~~~~EGayY~wt~~Ei~~~lg~~--~~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g 508 (725)
+.+.+..+..++.+|.++...++.+++++. .+.+.+.+
T Consensus 105 g~~~~~~~~l~~~a~~l~ala~~~~at~d~~~l~~A~~~~---------------------------------------- 144 (384)
T cd00249 105 GRPVDATKDLYSHAFALLAAAQAAKVGGDPEARALAEETI---------------------------------------- 144 (384)
T ss_pred CCCcccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH----------------------------------------
Confidence 888777777888899999999998888743 22222222
Q ss_pred CCHHHHHHHHHHHHHHHHhhhccCCC-C-CCCcchhhhcHHHH--HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHH
Q 004888 509 MPLEKYLNILGECRRKLFDVRSKRPR-P-HLDDKVIVSWNGLV--ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEV 584 (725)
Q Consensus 509 ~~~e~~~~~l~~~r~kL~~~R~~R~~-P-~lDdKiitsWNal~--I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~ 584 (725)
+.+.++++ ....... . .-|+..+-+.|..| +.+|.++++++++ ++|++.
T Consensus 145 ----------~~l~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~h~~~all~l~~~tgd----------------~~~~~~ 197 (384)
T cd00249 145 ----------DLLERRFW-EDHPGAFDEADPGTPPYRGSNPHMHLLEAMLAAYEATGE----------------QKYLDR 197 (384)
T ss_pred ----------HHHHHHhc-cCCCcccCCCCCCCCCCCCCChhHHHHHHHHHHHHHhCC----------------HHHHHH
Confidence 11112221 0000000 0 00011122234555 8899999999998 789999
Q ss_pred HHHHHHHHHHhccccCCCeEEEEecCCCC------CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc
Q 004888 585 AESAASFIRRHLYDEQTHRLQHSFRNGPS------KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLD 658 (725)
Q Consensus 585 A~~~a~~l~~~l~d~~~G~l~~s~~~g~~------~~~~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D 658 (725)
|+++.+.+.++++++++|+++..+.++.. .....+.-.+..+.+++.+++++|+++|++.|+++++.+.++++|
T Consensus 198 A~~l~~~~~~~~~~~~~G~~~e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~d 277 (384)
T cd00249 198 ADEIADLILDRFIDAESGVVREHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRLFDLALALGWD 277 (384)
T ss_pred HHHHHHHHHHHhcCcccCeEEEEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCcC
Confidence 99999999999998878888866543311 111222335667889999999999999999999999999999999
Q ss_pred cCCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 004888 659 REGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLYLR 723 (725)
Q Consensus 659 ~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~t~~~~~~~y~~~A~~~l~~~ 723 (725)
+++|++|.+..++... ...|+..+++++.++.+++.|+.++|+ +.|.+.++++....
T Consensus 278 ~~~G~~~~~~~~~~~~-----~~~~~~~~w~~~E~~~a~~~l~~~tgd---~~~~~~~~~~~~~~ 334 (384)
T cd00249 278 PERGGLYYSFLDDGGL-----LEDDDKRWWPQTEALKAALALAGITGD---ERYWQWYQRAWAYL 334 (384)
T ss_pred ccCCCEEEeeECCCCC-----cccccccccHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHH
Confidence 9989888833222221 246789999999999999999999997 67999888887653
No 6
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=99.90 E-value=3.3e-21 Score=211.61 Aligned_cols=339 Identities=16% Similarity=0.068 Sum_probs=232.3
Q ss_pred HHHHHHHHHh-hccccCCCCCCC------C----CCCChhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCC
Q 004888 285 LRLCAEQLSK-SYDSRFGGFGSA------P----KFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGI 353 (725)
Q Consensus 285 ~~~~~~~l~~-~~D~~~GGfg~a------p----KFP~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~ma~gGi 353 (725)
+++++..+.. .+|+++|||... | |.- ....++++.....- ....+++.+++|.++++-|.. -.
T Consensus 16 ~~~~~~fw~~~~~d~~~gg~~~~l~~~g~~~~~~k~~--~~~ar~i~~~a~a~---~~~~~~~~l~~A~~~~~fl~~-~~ 89 (384)
T cd00249 16 LEDLLPFWLEAGLDREAGGFFECLDRDGQPFDTDRRL--WLQARQVYCFAVAY---LLGWRPEWLEAAEHGLEYLDR-HG 89 (384)
T ss_pred HHHHHHHHHhcCCCCCCCCeEEEECCCCCCCCCCCeE--EEecHHHHHHHHHH---HhcCChhHHHHHHHHHHHHHH-hC
Confidence 4556666766 689999999652 2 221 11223332221110 011246789999999998887 46
Q ss_pred cccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCcc
Q 004888 354 HDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAE 433 (725)
Q Consensus 354 ~D~v~GGF~RYs~D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~Ggfysa~DADs~~ 433 (725)
+|..+|||++ +.+++|.+.+..|.|||+|.++.+|+.+|++++++.|++.|+++++++.++|+++.||++...+.|..+
T Consensus 90 ~d~~~Gg~~~-~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~~~ 168 (384)
T cd00249 90 RDPDHGGWYF-ALDQDGRPVDATKDLYSHAFALLAAAQAAKVGGDPEARALAEETIDLLERRFWEDHPGAFDEADPGTPP 168 (384)
T ss_pred cCCCCCCEEE-EEcCCCCCcccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCCC
Confidence 6766799986 888889888889999999999999999999999999999999999999999995557777554443211
Q ss_pred ccccccccCcceEEechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHH
Q 004888 434 TEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEK 513 (725)
Q Consensus 434 ~~~~~~~~EGayY~wt~~Ei~~~lg~~~~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~e~ 513 (725)
..+ ..+ +. ...+.+.+.+.++.+. ...+.
T Consensus 169 ~~~---~~~--~~------------h~~~all~l~~~tgd~----------------------------------~~~~~ 197 (384)
T cd00249 169 YRG---SNP--HM------------HLLEAMLAAYEATGEQ----------------------------------KYLDR 197 (384)
T ss_pred CCC---CCh--hH------------HHHHHHHHHHHHhCCH----------------------------------HHHHH
Confidence 100 000 00 0011111112221100 00133
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCC-----------CcchhhhcHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHH
Q 004888 514 YLNILGECRRKLFDVRSKRPRPHL-----------DDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYM 582 (725)
Q Consensus 514 ~~~~l~~~r~kL~~~R~~R~~P~l-----------DdKiitsWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl 582 (725)
..++++.+.+++.+....+..-+. .+-+.-+-|.-++++|.++++++++ ++|+
T Consensus 198 A~~l~~~~~~~~~~~~~G~~~e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~----------------~~~~ 261 (384)
T cd00249 198 ADEIADLILDRFIDAESGVVREHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQ----------------AWLI 261 (384)
T ss_pred HHHHHHHHHHHhcCcccCeEEEEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCC----------------HHHH
Confidence 445555556666543332221111 1112233466778899999999987 7899
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEe-c-CC-CCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc
Q 004888 583 EVAESAASFIRRHLYDEQTHRLQHSF-R-NG-PSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDR 659 (725)
Q Consensus 583 ~~A~~~a~~l~~~l~d~~~G~l~~s~-~-~g-~~~~~~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~ 659 (725)
+.|+++.+++.++++|+++|+++.+. . ++ .....+.++.++.++.+++.+|++|||++|++++.++++.+..+|+|+
T Consensus 262 ~~a~~~~~~~~~~~~d~~~G~~~~~~~~~~~~~~~~~~~~w~~~E~~~a~~~l~~~tgd~~~~~~~~~~~~~~~~~~~d~ 341 (384)
T cd00249 262 EKARRLFDLALALGWDPERGGLYYSFLDDGGLLEDDDKRWWPQTEALKAALALAGITGDERYWQWYQRAWAYLWRHFIDP 341 (384)
T ss_pred HHHHHHHHHHHHhCcCccCCCEEEeeECCCCCcccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999888888743 2 33 234467889999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHH
Q 004888 660 EGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVR 699 (725)
Q Consensus 660 ~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~Llr 699 (725)
+.|+||..-+.+..+....| .-...++++..++...++
T Consensus 342 ~~G~w~~~~~~~g~~~~~~~--~~~~~~yH~~~a~~~~~~ 379 (384)
T cd00249 342 EYGLWFGYLDADGKVLLTPK--GPAKTFYHVVRALYEALD 379 (384)
T ss_pred CCCcceeeECCCCCCcCCCC--CCCCCCccHHhHHHHHHH
Confidence 99999987766666654443 445678888887765543
No 7
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.83 E-value=2.3e-20 Score=175.77 Aligned_cols=90 Identities=19% Similarity=0.329 Sum_probs=78.1
Q ss_pred CCCccccchHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCc-chHHHHHHHHHH
Q 004888 119 NPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERP-DVDKVYMTYVQA 197 (725)
Q Consensus 119 ~~V~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~p-d~~~~y~~~~q~ 197 (725)
+.|+|.+.+++|++.||++||||||+|+++||++|++|++++|+|++|++++|++||+|++|.+... ... .
T Consensus 4 ~~i~W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~-~------- 75 (130)
T cd02960 4 DDIIWVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS-P------- 75 (130)
T ss_pred ccccchhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC-c-------
Confidence 4699997779999999999999999999999999999999999999999999999999999876321 111 0
Q ss_pred hcCCCCcCcEEEecCCCCccc
Q 004888 198 LYGGGGWPLSVFLSPDLKPLM 218 (725)
Q Consensus 198 ~~g~~G~P~~vfl~pdG~~i~ 218 (725)
.| .|+|+++|++|+|+++.
T Consensus 76 -~g-~~vPtivFld~~g~vi~ 94 (130)
T cd02960 76 -DG-QYVPRIMFVDPSLTVRA 94 (130)
T ss_pred -cC-cccCeEEEECCCCCCcc
Confidence 13 58999999999999875
No 8
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=99.81 E-value=2.4e-20 Score=203.01 Aligned_cols=299 Identities=19% Similarity=0.200 Sum_probs=198.7
Q ss_pred eEEEEecCCCCCC-CCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCC-CceeeeccCCCcccccc
Q 004888 360 GFHRYSVDERWHV-PHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPG-GEIFSAEDADSAETEGA 437 (725)
Q Consensus 360 GF~RYs~D~~W~v-PHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~-Ggfysa~DADs~~~~~~ 437 (725)
|||.+ .|.++.+ +-..|.+..|||++|+|+.||+ ++++.|+++|+++++||.+.+++++ ||||+++|.+. |.+..
T Consensus 1 Gf~~~-ld~~g~~~~~~~k~~~~q~R~~~~fa~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~-~~~~~ 77 (346)
T PF07221_consen 1 GFFEC-LDRDGKPDDSDKKRLWVQARQLYTFARAYR-LGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGG-PLDPQ 77 (346)
T ss_dssp SBE-E-BBTTS-BECGGEEEHHHHHHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTE-EEE--
T ss_pred Cceee-eCCCCCCCCCCCceeeeeHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCC-CCccc
Confidence 67764 7777775 5556799999999999999999 8999999999999999999999887 99999999887 78888
Q ss_pred ccccCcceEEechHHHHHHhhhh--HHHHHHHhcc-------c-CCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhc
Q 004888 438 TRKKEGAFYVWTSKEVEDILGEH--AILFKEHYYL-------K-PTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKL 507 (725)
Q Consensus 438 ~~~~EGayY~wt~~Ei~~~lg~~--~~l~~~~y~l-------~-~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~ 507 (725)
+..+..+|.++..++ ..+++++ .+++.+.+.+ . ..|..+. ...|+......+.++|+.+. +...+
T Consensus 78 ~~~Y~~af~l~ala~-~~~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~-~~~~~~~~r~~n~~mhl~eA---~l~l~ 152 (346)
T PF07221_consen 78 KDLYDQAFALLALAE-ARATGDPEALELAEQTLEFLERRFWDPEGGGYRES-FDPDWSPPRGQNPHMHLLEA---FLALY 152 (346)
T ss_dssp EEHHHHHHHHHHHHH-HHCTT-TTHHHHHHHHHHHHHHHTEETTTTEE--E-ETTTSSCBEEHHHHHHHHHH---HHHHH
T ss_pred cchHHHHHHHHHHHH-HHHhCChhHHHHHHHHHHHHHHHhcccccCcceec-cCCccccCCCCChhHHHHHH---HHHHH
Confidence 899999999999999 6677732 4444444433 2 2232211 11111111112334555543 22233
Q ss_pred CCC-HHHHH----HHHHHHHHHHHhhhccCCCCCCCc--chhhhcH------------HHH---HHHHHHHHHHhhhhhh
Q 004888 508 GMP-LEKYL----NILGECRRKLFDVRSKRPRPHLDD--KVIVSWN------------GLV---ISSFARASKILKSEAE 565 (725)
Q Consensus 508 g~~-~e~~~----~~l~~~r~kL~~~R~~R~~P~lDd--KiitsWN------------al~---I~aLa~A~~vl~d~~~ 565 (725)
.++ .+.+. ++++.+.+++.+....+.+-++|+ +.+...+ |.. +|.|.++....+..
T Consensus 153 ~~~~~~~~~~~a~~l~~~~~~~f~~~~~g~~~E~f~~dw~~~~~~~~~d~~~~~~~~pGH~~E~~wll~~~~~~~~~~-- 230 (346)
T PF07221_consen 153 EATGDPRYLDRAEELLDLFLDRFADPESGALPEFFDRDWNPLPDGSGDDTFRGRIVEPGHDFEWAWLLLEAARLTGRG-- 230 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHCCTTEETSEEETTSEBETTTTTTHSTTTSSB-HHHHHHHHHHHHHHHHHCHCT--
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHhccCeeeeeeccccccccccccccccccCccCCchhHHHHHHHHHHHHhcccc--
Confidence 322 23333 344444555555444434444443 1111111 222 66788877444431
Q ss_pred hhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCC-CCCCCcchHHHHHHHHHHHHHHcCCHHHHH
Q 004888 566 SAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPS-KAPGFLDDYAFLISGLLDLYEFGSGTKWLV 643 (725)
Q Consensus 566 ~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s-~~~g~~-~~~~~leDyA~li~aLL~LYe~Tgd~~yL~ 643 (725)
.+++++.|.+++++..++-||+++|+++.. ..+|.+ ...+.++.++.++.|++.+|+.||++.|++
T Consensus 231 ------------~~~~~~~a~~l~~~~~~~G~d~~~gG~~~~~d~~g~~~~~~k~wW~q~Eal~a~~~~~~~tg~~~~~~ 298 (346)
T PF07221_consen 231 ------------DPDWLERARRLFDFALEHGWDREGGGLFYSVDRDGKPPDRSKRWWPQAEALKALLAAYELTGDEKYLD 298 (346)
T ss_dssp -------------HTHHHHHHHHHHHHHHHHBSTTTSSB-SEEETTS-BSST-EEHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred ------------cHHHHHHHHHHHHHHHHheEecCCCeEEEEEeCCCCccccCccccHHHHHHHHHHHHHhccCcHHHHH
Confidence 278999999999999999999988877766 355554 456889999999999999999999999999
Q ss_pred HHHHHHHHHHHHccccCCCcccccCCCCCcccccccc
Q 004888 644 WAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKE 680 (725)
Q Consensus 644 ~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~ 680 (725)
++.++++++.++|.|++.|+||..-+.+..+..+.+.
T Consensus 299 ~~~~~~~~~~~~~~d~~~G~W~~~l~~dg~~~~~~~~ 335 (346)
T PF07221_consen 299 WARRVWDYIFRHFIDPEYGEWFDYLDRDGSPLEKVKA 335 (346)
T ss_dssp HHHHHHHHHHHHTB-TTTSSB-SEE-TTS-BSCSBST
T ss_pred HHHHHHHHHHHhCCCCCCCeeEeeECCCCCCCCCCCC
Confidence 9999999999999999999999987777665444433
No 9
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.79 E-value=1.1e-19 Score=157.97 Aligned_cols=82 Identities=35% Similarity=0.577 Sum_probs=71.9
Q ss_pred ccccchHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCC
Q 004888 122 DWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGG 201 (725)
Q Consensus 122 ~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~ 201 (725)
+|++++++|+++|+++||||||.|+++||++|+.|++++|++++|.+.++++||+|+||.++.....+.. +
T Consensus 1 ~W~~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~--------~- 71 (82)
T PF13899_consen 1 NWQSDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFD--------R- 71 (82)
T ss_dssp -EESSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHH--------H-
T ss_pred ChhhhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhC--------C-
Confidence 5999999999999999999999999999999999999999999999999999999999997643322221 1
Q ss_pred CCcCcEEEecC
Q 004888 202 GGWPLSVFLSP 212 (725)
Q Consensus 202 ~G~P~~vfl~p 212 (725)
.|+|+++|++|
T Consensus 72 ~~~P~~~~ldp 82 (82)
T PF13899_consen 72 QGYPTFFFLDP 82 (82)
T ss_dssp CSSSEEEEEET
T ss_pred ccCCEEEEeCC
Confidence 47999999997
No 10
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.74 E-value=6e-18 Score=155.82 Aligned_cols=105 Identities=15% Similarity=0.225 Sum_probs=89.5
Q ss_pred chHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcC
Q 004888 126 WGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (725)
Q Consensus 126 ~~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P 205 (725)
..++|+++||+++|||||+|+++||++|+.|++++|+|++|.+.||++||.+++|.++ |+..+ +.. .+++.++|
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~-~e~~~-~~~----~~~~~~~P 78 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDS-SEGQR-FLQ----SYKVDKYP 78 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCC-ccHHH-HHH----HhCccCCC
Confidence 3589999999999999999999999999999999999999999999999999999985 54432 222 23788999
Q ss_pred cEEEecC-CCCcccc-ccccCCCCCCCcchHHHHHHHHH
Q 004888 206 LSVFLSP-DLKPLMG-GTYFPPEDKYGRPGFKTILRKVK 242 (725)
Q Consensus 206 ~~vfl~p-dG~~i~~-~tY~p~~~~~~~~~F~~~L~~i~ 242 (725)
+++|++| +|+++.. .+|.+++ .|++.|+++.
T Consensus 79 ~~~~i~~~~g~~l~~~~G~~~~~------~f~~~L~~~~ 111 (114)
T cd02958 79 HIAIIDPRTGEVLKVWSGNITPE------DLLSQLIEFL 111 (114)
T ss_pred eEEEEeCccCcEeEEEcCCCCHH------HHHHHHHHHH
Confidence 9999999 8999875 4677766 6888877654
No 11
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=99.74 E-value=1.9e-16 Score=171.00 Aligned_cols=311 Identities=17% Similarity=0.115 Sum_probs=241.5
Q ss_pred HHhCCCcccCCCeEEEEecCCCCCCCC-CchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeee
Q 004888 348 MAKGGIHDHVGGGFHRYSVDERWHVPH-FEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSA 426 (725)
Q Consensus 348 ma~gGi~D~v~GGF~RYs~D~~W~vPH-FEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~Ggfysa 426 (725)
|-..--.|..+||||.+- +.+-.+-. -.|-+..|++++++|+.|+....++.++++|.+.++|+.+.-++++||+|.+
T Consensus 23 ~w~~~g~d~~~GGffe~l-~~dG~~~~~~~rr~~~~~Rqvy~fA~A~~~g~~~~~~~~v~hG~~y~~~~~R~~~gg~~~~ 101 (388)
T COG2942 23 FWLNAGVDTEGGGFFEAL-DRDGQILDETDRRLRVQARQVYCFAVAGLLGWRGPWLDAVAHGIAYLARVGRDPEGGWYFA 101 (388)
T ss_pred hhcccCcCCCCCCceeee-ccCCccccCCCceeeeehhHHHHHHHHHHhcCCccHHHHHHhHHHHHHhcCcCCCCCeEEE
Confidence 445556788899999844 44444333 6788889999999999999999888899999999999999999999999999
Q ss_pred ccCCCccccccccccCcceEEechHHHHHHhhhhH--------HHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccC
Q 004888 427 EDADSAETEGATRKKEGAFYVWTSKEVEDILGEHA--------ILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELN 498 (725)
Q Consensus 427 ~DADs~~~~~~~~~~EGayY~wt~~Ei~~~lg~~~--------~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~ 498 (725)
++.|+.+.+..++.+-.+|-+...+.+..+.++++ ++..++|-=...+-.-...+.+|..+...+.|+|+.+
T Consensus 102 ~~~dg~~~Dat~d~Y~haFallA~A~~a~a~~~~a~~~~~~a~~~l~~~~~~~~~pl~~~e~~~~~~~pl~sNp~MHl~E 181 (388)
T COG2942 102 LDNDGGPVDATKDLYGHAFALLAAAHAATAGPPRADELLDEALDVLERRFWREEHPLGGFEEDNPGSAPLGSNPHMHLLE 181 (388)
T ss_pred ecCCCCcccccHhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCccCCCcchHHHH
Confidence 99999999999999999999999999888887542 2333333222222111112455555566778899887
Q ss_pred CchHHHHhcCC--CHHHHHHHHHHHHHHHHhhhccCCCCCCCcchhhhcHHH------------H---HHHHHHHHHHhh
Q 004888 499 DSSASASKLGM--PLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGL------------V---ISSFARASKILK 561 (725)
Q Consensus 499 ~~~~~a~~~g~--~~e~~~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal------------~---I~aLa~A~~vl~ 561 (725)
..-+..+..|- ..+.+.++.+.++.+..+.++-+.+-++|.. ||.. . .+.|...++..+
T Consensus 182 A~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~d----W~p~~~frg~~~ePGH~fEW~~Lll~~a~~~~ 257 (388)
T COG2942 182 AMLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFDHD----WNPAHGFRGRGIEPGHQFEWAWLLLDIARRRG 257 (388)
T ss_pred HHHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhcccc----CCcCCCcccCCCCCchHHHHHHHHHHHHHHhc
Confidence 53222122221 1244556778889999999999999999997 8622 1 346677777766
Q ss_pred hhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCC-CCCCCcchHHHHHHHHHHHHHHcC-C
Q 004888 562 SEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPS-KAPGFLDDYAFLISGLLDLYEFGS-G 638 (725)
Q Consensus 562 d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~-~~g~~-~~~~~leDyA~li~aLL~LYe~Tg-d 638 (725)
+ ...+..|+++.+-..++-||++.|+++.++ .||.+ +....+++++..+.+++.|+..|| +
T Consensus 258 ~----------------~~l~~~A~~lf~~a~~~g~d~~~gg~~~sl~~D~~~~d~~~r~WpQ~E~l~AA~ala~~~~~~ 321 (388)
T COG2942 258 R----------------AWLIEAARRLFDIAVADGWDPERGGAYYSLDDDGSPHDRQQRLWPQTEALKAAVALAETTGAR 321 (388)
T ss_pred h----------------hHHHHHHHHHHHHHHHhccCcccCeEEEEecCCCCcCCHHHhhChHHHHHHHHHHHHhcCCch
Confidence 5 678999999999999999999999988874 56655 446889999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccc
Q 004888 639 TKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVK 679 (725)
Q Consensus 639 ~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k 679 (725)
+.|.++..++++++..+|.|++.|.||+.-.++..++...+
T Consensus 322 ~~y~~~~~R~~~~~~~hl~d~~~G~W~~~l~~dg~~~~~~k 362 (388)
T COG2942 322 ERYWQWYARAWDYLWWHLDDPEYGLWFDKLDEDGEVLLTLK 362 (388)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCCcchhhcCCCCceecccC
Confidence 99999999999999999999999999997776666554333
No 12
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.73 E-value=9.7e-18 Score=155.87 Aligned_cols=112 Identities=20% Similarity=0.351 Sum_probs=86.4
Q ss_pred CCCccccchHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHh
Q 004888 119 NPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQAL 198 (725)
Q Consensus 119 ~~V~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~ 198 (725)
+.|.|++| ++|+++|++++|||||+|+++||+||+.|+....+.+++.+ ++.+||.|.||.++.+ ..+.|
T Consensus 1 ~~i~w~~~-~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~~-~~~~~------- 70 (117)
T cd02959 1 DHIHWVTL-EDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDEEP-KDEEF------- 70 (117)
T ss_pred CcccceeH-HHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCCCc-hhhhc-------
Confidence 46899987 99999999999999999999999999999998888788766 6779999999876544 33334
Q ss_pred cCCC--CcCcEEEecCCCCccccccccCCCCCCCcchHHHHHHHHHH
Q 004888 199 YGGG--GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 243 (725)
Q Consensus 199 ~g~~--G~P~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i~~ 243 (725)
+.. ++|+++|++|+|+++...+ ..-+.+....|.+.|+.|.+
T Consensus 71 -~~~g~~vPt~~f~~~~Gk~~~~~~--~~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 71 -SPDGGYIPRILFLDPSGDVHPEII--NKKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred -ccCCCccceEEEECCCCCCchhhc--cCCCCccccccCCCHHHHHh
Confidence 333 4999999999999975311 11122334578888877754
No 13
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.65 E-value=4.9e-16 Score=144.94 Aligned_cols=109 Identities=23% Similarity=0.419 Sum_probs=85.7
Q ss_pred hHHHHHHHhhcC-CcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHH------HHHHHHhc
Q 004888 127 GEEAFAEARKRD-VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY------MTYVQALY 199 (725)
Q Consensus 127 ~~eAl~~Ak~e~-KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y------~~~~q~~~ 199 (725)
+.++++.|++++ |||+|.|+++||++|++|+.++++++++.+.++++|++++||+++.+.+.. | ...+...+
T Consensus 2 ~~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~-~~~~~~~~~~l~~~~ 80 (125)
T cd02951 2 LYEDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTD-FDGEALSEKELARKY 80 (125)
T ss_pred hHHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeec-cCCCCccHHHHHHHc
Confidence 468999999999 999999999999999999999999999999998899999999986532110 0 00111224
Q ss_pred CCCCcCcEEEecCC-CCcccc-ccccCCCCCCCcchHHHHHHHHH
Q 004888 200 GGGGWPLSVFLSPD-LKPLMG-GTYFPPEDKYGRPGFKTILRKVK 242 (725)
Q Consensus 200 g~~G~P~~vfl~pd-G~~i~~-~tY~p~~~~~~~~~F~~~L~~i~ 242 (725)
++.++|+++|++++ |+++.. .+|.+++ .|.++|+.+.
T Consensus 81 ~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~------~~~~~l~~~~ 119 (125)
T cd02951 81 RVRFTPTVIFLDPEGGKEIARLPGYLPPD------EFLAYLEYVQ 119 (125)
T ss_pred CCccccEEEEEcCCCCceeEEecCCCCHH------HHHHHHHHHH
Confidence 88899999999999 888764 3555543 6888887764
No 14
>smart00594 UAS UAS domain.
Probab=99.58 E-value=3.8e-15 Score=139.34 Aligned_cols=89 Identities=18% Similarity=0.237 Sum_probs=77.0
Q ss_pred CCccccchHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhc
Q 004888 120 PVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALY 199 (725)
Q Consensus 120 ~V~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~ 199 (725)
|.=+...+++|+++|++++|++||+|+++||.+|++|++++|.|++|.+++|+|||.+++|++... -. .++ ..+
T Consensus 9 ~~f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~e-g~-~l~----~~~ 82 (122)
T smart00594 9 PLFYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSE-GQ-RVS----QFY 82 (122)
T ss_pred CceeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChh-HH-HHH----Hhc
Confidence 555666779999999999999999999999999999999999999999999999999999998533 21 121 124
Q ss_pred CCCCcCcEEEecCCC
Q 004888 200 GGGGWPLSVFLSPDL 214 (725)
Q Consensus 200 g~~G~P~~vfl~pdG 214 (725)
++.|+|+++|++|+|
T Consensus 83 ~~~~~P~~~~l~~~~ 97 (122)
T smart00594 83 KLDSFPYVAIVDPRT 97 (122)
T ss_pred CcCCCCEEEEEecCC
Confidence 788999999999997
No 15
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.57 E-value=4.9e-15 Score=133.69 Aligned_cols=95 Identities=22% Similarity=0.333 Sum_probs=78.0
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcE
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~ 207 (725)
++++++|.++||||+|.|+++||++|+.|....++++++++.++++++.++||++++++....++ +. +++.++|++
T Consensus 1 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~---~~-~~i~~~Pti 76 (104)
T cd02953 1 EAALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALL---KR-FGVFGPPTY 76 (104)
T ss_pred CHHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHH---HH-cCCCCCCEE
Confidence 36789999999999999999999999999988889999999998899999999987544333232 22 388999999
Q ss_pred EEecC-CCCcccc-ccccCCC
Q 004888 208 VFLSP-DLKPLMG-GTYFPPE 226 (725)
Q Consensus 208 vfl~p-dG~~i~~-~tY~p~~ 226 (725)
+|+++ +|+++.. .+|.+.+
T Consensus 77 ~~~~~~~g~~~~~~~G~~~~~ 97 (104)
T cd02953 77 LFYGPGGEPEPLRLPGFLTAD 97 (104)
T ss_pred EEECCCCCCCCcccccccCHH
Confidence 99999 8987754 4566644
No 16
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=99.52 E-value=1.2e-12 Score=144.64 Aligned_cols=285 Identities=20% Similarity=0.242 Sum_probs=181.3
Q ss_pred HHHHHHHhhcccc-CCCCCC---CC--CCCChhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCe
Q 004888 287 LCAEQLSKSYDSR-FGGFGS---AP--KFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGG 360 (725)
Q Consensus 287 ~~~~~l~~~~D~~-~GGfg~---ap--KFP~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~ma~gGi~D~v~GG 360 (725)
.++..+.+.|+.. .|++.. .| ..|.+..+..|..++.+++ ++...+++..++..+.... +|.
T Consensus 8 ~~~~~l~~~y~~~~~g~~~g~~~~~~~~W~~a~~~~~~~d~~~~t~-------d~~y~~~~~~~~~~~~~~~-~~~---- 75 (370)
T PF03663_consen 8 SAADALQKYYNGNASGNIPGLFPSPYYWWWQAVMLSALIDYYRRTG-------DPTYNDLIQNALLNQRGPN-YDS---- 75 (370)
T ss_dssp HHHHHHHHHHB-SSTTT-B-SEES--H-HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHT-TSS----
T ss_pred HHHHHHHHHhCCCCCCCCCCCCCCCCCcChHHHHHHHHHHHHHHhC-------cchHHHHHHHHHHHHhccc-ccc----
Confidence 4455666888887 454321 12 3556677788888887654 3678889999999887644 110
Q ss_pred EEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCCh-----HHHHHHHHHHHHHHHhccCCC---CceeeeccC-CC
Q 004888 361 FHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDV-----FYSYICRDILDYLRRDMIGPG---GEIFSAEDA-DS 431 (725)
Q Consensus 361 F~RYs~D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~-----~y~~vA~~~~~fl~~~m~~~~---Ggfysa~DA-Ds 431 (725)
|.. ..|. ...-.-|||.+..++.+||++++++ .|++.|+++.+++.. -++.+ ||++|..+. +.
T Consensus 76 ~~~----~~~~---~~~~~DD~aw~~la~l~aye~t~~~~~~~~~yL~~A~~i~~~~~~-~wd~~~cgGGi~W~~~~~~~ 147 (370)
T PF03663_consen 76 YNP----SNGS---GDRYYDDNAWWALALLRAYELTGDQPSDNPKYLDLAKEIFDFLIS-GWDDTSCGGGIWWSIDDTNS 147 (370)
T ss_dssp S------S---------BHHHHHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHH-TB-SGG-GS-BEEET----T
T ss_pred ccc----cccc---ccCccChHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHH-hcCCccCCCCccccccccCC
Confidence 111 0000 1123446999999999999999999 999999999999994 55654 899986321 00
Q ss_pred ccccccccccCcceEEechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCH
Q 004888 432 AETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPL 511 (725)
Q Consensus 432 ~~~~~~~~~~EGayY~wt~~Ei~~~lg~~~~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~ 511 (725)
++
T Consensus 148 ----------------------------------------------------------~~-------------------- 149 (370)
T PF03663_consen 148 ----------------------------------------------------------GY-------------------- 149 (370)
T ss_dssp ----------------------------------------------------------EE--------------------
T ss_pred ----------------------------------------------------------CC--------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCcchhhhcHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHH
Q 004888 512 EKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASF 591 (725)
Q Consensus 512 e~~~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~ 591 (725)
+..-+--|+.++.+.+++++++++ +.|++.|+++.+|
T Consensus 150 ---------------------------~~Kna~sN~~~~~laarL~~~t~~----------------~~Yl~~A~~~~~W 186 (370)
T PF03663_consen 150 ---------------------------DYKNAISNGPAAQLAARLYRITGD----------------QTYLDWAKKIYDW 186 (370)
T ss_dssp ---------------------------EEEEHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHH
T ss_pred ---------------------------CcccccchHHHHHHHHHHHHhcCC----------------hHHHHHHHHHHHH
Confidence 111122489999999999999988 6799999999999
Q ss_pred HHH-hccccCCCeEEEEec-CC---CCCCCCCcchHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHccccCCCccc
Q 004888 592 IRR-HLYDEQTHRLQHSFR-NG---PSKAPGFLDDYAFLISGLLDLYEFGSGT-KWLVWAIELQNTQDELFLDREGGGYF 665 (725)
Q Consensus 592 l~~-~l~d~~~G~l~~s~~-~g---~~~~~~~leDyA~li~aLL~LYe~Tgd~-~yL~~A~~L~~~~~~~F~D~~~Ggyf 665 (725)
+.+ +|+|+++|.++.... ++ ......+...++.+|.|++.||++|+++ .||+.|++|.+.+..+|+++.+|-.+
T Consensus 187 ~~~~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~yl~~A~~la~~~~~~~~~~~~gil~ 266 (370)
T PF03663_consen 187 MRDSGLIDPSTGLVYDGINIDGNCTNINKTKWTYNQGVFLGAAAYLYNATNDEQTYLDRAEKLADAAINHFFDNGDGILT 266 (370)
T ss_dssp HHH-HHB--TTS-B--EE-TTSSS-B-TT---HHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHEETT--EE-
T ss_pred hhcceeEECCCcEEEeCCccCCCCCcCCCceechHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHhCCCCCeeee
Confidence 999 999988888776542 22 2345678889999999999999999887 99999999999999998876655455
Q ss_pred ccCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHhhCCCCchHHHHHHHHHH
Q 004888 666 NTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSL 720 (725)
Q Consensus 666 ~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~t~~~~~~~y~~~A~~~l 720 (725)
+..-+. ....++-.+.-+++.+..|..|..+... ..+.|....+.-.
T Consensus 267 e~~ce~-------~~~~~~d~~~Fkgi~~r~L~~l~~~~~~-~~~~~~~~l~~~a 313 (370)
T PF03663_consen 267 EEACEP-------SGTCDGDQPLFKGIFARYLADLAQVAPD-TADTYRDFLRKNA 313 (370)
T ss_dssp ----------------SSSGGGGHHHHHHHHHHHHHHHHT----HHHHHHHHHHH
T ss_pred cccccc-------CcCcCCccHHHHHHHHHHHHHHHHHCcc-hHHHHHHHHHHHH
Confidence 431110 1123445688999999999999999853 1245655544433
No 17
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.48 E-value=1.1e-13 Score=160.43 Aligned_cols=113 Identities=20% Similarity=0.329 Sum_probs=89.6
Q ss_pred CCCccccch-----HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHH
Q 004888 119 NPVDWFAWG-----EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMT 193 (725)
Q Consensus 119 ~~V~W~~~~-----~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~ 193 (725)
+.+.|++.. ++++++|+++||||+|+|+++||++|++|++.+|+|++|++.++ +|+.++||++++.+-.+.+++
T Consensus 450 ~~~~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~ 528 (571)
T PRK00293 450 AHLNFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLK 528 (571)
T ss_pred cCCCceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHH
Confidence 445676653 78999999999999999999999999999999999999999996 799999999875433333322
Q ss_pred HHHHhcCCCCcCcEEEecCCCCccc--c-ccccCCCCCCCcchHHHHHHHHH
Q 004888 194 YVQALYGGGGWPLSVFLSPDLKPLM--G-GTYFPPEDKYGRPGFKTILRKVK 242 (725)
Q Consensus 194 ~~q~~~g~~G~P~~vfl~pdG~~i~--~-~tY~p~~~~~~~~~F~~~L~~i~ 242 (725)
.+++.|+|+++|++++|+++. . .++.+++ .|.+.|+++.
T Consensus 529 ----~~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~------~f~~~L~~~~ 570 (571)
T PRK00293 529 ----HYNVLGLPTILFFDAQGQEIPDARVTGFMDAA------AFAAHLRQLQ 570 (571)
T ss_pred ----HcCCCCCCEEEEECCCCCCcccccccCCCCHH------HHHHHHHHhc
Confidence 248899999999999999862 2 3455544 6888877653
No 18
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.8e-12 Score=146.94 Aligned_cols=158 Identities=15% Similarity=0.140 Sum_probs=129.9
Q ss_pred CchhHHH-HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCccccccccccCcceEEechHHH
Q 004888 375 FEKMLYD-QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEV 453 (725)
Q Consensus 375 FEKMLyD-NA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei 453 (725)
-+|+|.| |++||.+++.|+++++++.|.++|+++.+|+.++|+.. .+.+.-
T Consensus 405 Ddkvlt~wNglmi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~--rl~~~~-------------------------- 456 (667)
T COG1331 405 DDKVLTDWNGLMIAALAEAGRVLGDPEYLEAAERAADFILDNLYVD--RLLRRY-------------------------- 456 (667)
T ss_pred CcceeeccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhccc--chheee--------------------------
Confidence 3588888 99999999999999999999999999999999999864 443310
Q ss_pred HHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCC
Q 004888 454 EDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRP 533 (725)
Q Consensus 454 ~~~lg~~~~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~e~~~~~l~~~r~kL~~~R~~R~ 533 (725)
+.|.. -.
T Consensus 457 ----------------------------------~~G~a---------------------------------------~~ 463 (667)
T COG1331 457 ----------------------------------RGGEA---------------------------------------AV 463 (667)
T ss_pred ----------------------------------ecCcc---------------------------------------cc
Confidence 01110 02
Q ss_pred CCCCCcchhhhcHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCC-
Q 004888 534 RPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP- 612 (725)
Q Consensus 534 ~P~lDdKiitsWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~- 612 (725)
.+.++|+ +++|.||+.+|++++| .+||+.|+++++-+.++|||++ |+||.+..+++
T Consensus 464 ~g~leDY------A~~i~gll~lye~t~d----------------~~yL~~A~~L~~~~i~~f~d~~-gGf~~t~~~~~~ 520 (667)
T COG1331 464 AGLLEDY------AFLILGLLALYEATGD----------------LAYLEKAIELADEAIADFWDDE-GGFYDTPSDSED 520 (667)
T ss_pred cccchhH------HHHHHHHHHHHHhhCc----------------HHHHHHHHHHHHHHHHHhcCCC-CCcccCCCcccc
Confidence 3456788 9999999999999998 7899999999999999999987 66876543322
Q ss_pred -------CCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 004888 613 -------SKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELF 656 (725)
Q Consensus 613 -------~~~~~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F 656 (725)
....++++++|.+|.+|+.|..+||+.+|.+.|.++++.+..+.
T Consensus 521 l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~~~y~e~A~~~L~a~~~~~ 571 (667)
T COG1331 521 LLIRPKEPTDGATPSGNAVAAQALLRLSLLTGDARYLEAAEDILQAFAGLA 571 (667)
T ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHH
Confidence 23458889999999999999999999999999999998876654
No 19
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=99.42 E-value=5.7e-13 Score=145.33 Aligned_cols=159 Identities=26% Similarity=0.289 Sum_probs=129.8
Q ss_pred CCCCCcchhhhcHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC
Q 004888 534 RPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS 613 (725)
Q Consensus 534 ~P~lDdKiitsWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~ 613 (725)
.|..+++.-+-.++++|+.++.|++ +|+ ++|++.|++.++||.++++|+++|+++++.++|.+
T Consensus 11 ~~~~~~~k~~~~q~R~~~~fa~a~~-~g~----------------~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~ 73 (346)
T PF07221_consen 11 KPDDSDKKRLWVQARQLYTFARAYR-LGR----------------PEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGGP 73 (346)
T ss_dssp -BECGGEEEHHHHHHHHHHHHHHHH-TTS----------------HHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTEE
T ss_pred CCCCCCCceeeeeHHHHHHHHHHHh-cCc----------------hhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCCC
Confidence 3555566677789999999999999 886 78999999999999999999988988888655443
Q ss_pred -CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCChHH-
Q 004888 614 -KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNS- 691 (725)
Q Consensus 614 -~~~~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Ns- 691 (725)
....-+.|+||++.|+.. +.+||++++++.|+++.+.+.++|+|++.|+|+.....+..++ +..|+
T Consensus 74 ~~~~~~~Y~~af~l~ala~-~~~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~~~~~~-----------r~~n~~ 141 (346)
T PF07221_consen 74 LDPQKDLYDQAFALLALAE-ARATGDPEALELAEQTLEFLERRFWDPEGGGYRESFDPDWSPP-----------RGQNPH 141 (346)
T ss_dssp EE--EEHHHHHHHHHHHHH-HHCTT-TTHHHHHHHHHHHHHHHTEETTTTEE--EETTTSSCB-----------EEHHHH
T ss_pred CccccchHHHHHHHHHHHH-HHHhCChhHHHHHHHHHHHHHHHhcccccCcceeccCCccccC-----------CCCChh
Confidence 345667789999999999 8999999999999999999999999999888887654333221 34555
Q ss_pred -HHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhh
Q 004888 692 -VSVINLVRLASIVAGSKSDYYRQNAEHSLYLRQ 724 (725)
Q Consensus 692 -v~a~~LlrL~~~t~~~~~~~y~~~A~~~l~~~~ 724 (725)
.++.+++.|+.++++ +.|+++|++++..+.
T Consensus 142 mhl~eA~l~l~~~~~~---~~~~~~a~~l~~~~~ 172 (346)
T PF07221_consen 142 MHLLEAFLALYEATGD---PRYLDRAEELLDLFL 172 (346)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC---HHHHHHHHHHHHHHH
Confidence 789999999999996 789999999998875
No 20
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.40 E-value=5.4e-13 Score=150.66 Aligned_cols=113 Identities=18% Similarity=0.201 Sum_probs=88.9
Q ss_pred CCCCccccchHH-HHHHHhhcCC--cEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHH
Q 004888 118 HNPVDWFAWGEE-AFAEARKRDV--PIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTY 194 (725)
Q Consensus 118 ~~~V~W~~~~~e-Al~~Ak~e~K--pI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~ 194 (725)
....-|+++.++ .++.+.+++| |||||||||||..||+||+.+|+|++|+..+. ++|.+++|++++...+...++-
T Consensus 451 ~~~~~~q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p~~~~lLk~ 529 (569)
T COG4232 451 SHGEFWQPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDPAITALLKR 529 (569)
T ss_pred ccchhhhccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCHHHHHHHHH
Confidence 334557888877 8888888888 99999999999999999999999999999985 8999999998754333333332
Q ss_pred HHHhcCCCCcCcEEEecCCCCccccc-cccCCCCCCCcchHHHHHHHH
Q 004888 195 VQALYGGGGWPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKV 241 (725)
Q Consensus 195 ~q~~~g~~G~P~~vfl~pdG~~i~~~-tY~p~~~~~~~~~F~~~L~~i 241 (725)
+|+.|.|+++|++++|++.... +++.. ..|++.|++.
T Consensus 530 ----~~~~G~P~~~ff~~~g~e~~~l~gf~~a------~~~~~~l~~~ 567 (569)
T COG4232 530 ----LGVFGVPTYLFFGPQGSEPEILTGFLTA------DAFLEHLERA 567 (569)
T ss_pred ----cCCCCCCEEEEECCCCCcCcCCcceecH------HHHHHHHHHh
Confidence 3888999999999999877653 23332 3677766653
No 21
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.37 E-value=1e-13 Score=126.15 Aligned_cols=99 Identities=30% Similarity=0.459 Sum_probs=72.5
Q ss_pred HhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHH------------HHHHHHHHhcCC
Q 004888 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDK------------VYMTYVQALYGG 201 (725)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~------------~y~~~~q~~~g~ 201 (725)
||+++||++|.|+.+||++|++|++++++++++...++++|..|.++.++..+... .....+...+|+
T Consensus 1 ~~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 1 AKGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV 80 (112)
T ss_dssp EETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence 68899999999999999999999999999999999998899999999875332111 111122233599
Q ss_pred CCcCcEEEecCCCCcccc-ccccCCCCCCCcchHHHHH
Q 004888 202 GGWPLSVFLSPDLKPLMG-GTYFPPEDKYGRPGFKTIL 238 (725)
Q Consensus 202 ~G~P~~vfl~pdG~~i~~-~tY~p~~~~~~~~~F~~~L 238 (725)
.|+|+++|+|++|+++.. .||.+++ +|+++|
T Consensus 81 ~gtPt~~~~d~~G~~v~~~~G~~~~~------~l~~~L 112 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKIVYRIPGYLSPE------ELLKML 112 (112)
T ss_dssp -SSSEEEECTTTSCEEEEEESS--HH------HHHHHH
T ss_pred CccCEEEEEcCCCCEEEEecCCCCHH------HHHhhC
Confidence 999999999999998864 4677765 676665
No 22
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=99.25 E-value=1.8e-11 Score=113.84 Aligned_cols=101 Identities=14% Similarity=0.163 Sum_probs=79.1
Q ss_pred hHHHHHHHhhcCCcEEEEEecc----CChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCC
Q 004888 127 GEEAFAEARKRDVPIFLSIGYS----TCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGG 202 (725)
Q Consensus 127 ~~eAl~~Ak~e~KpI~l~~g~~----wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~ 202 (725)
++||++.||+++|+++|+++++ ||.+| +++|.||+|.++||++||.+..|++.. +- + +..+. .++.
T Consensus 6 ~~eAl~~ak~e~K~llVylhs~~~~~~~~fc----~~~l~~~~v~~~ln~~fv~w~~dv~~~-eg---~-~la~~-l~~~ 75 (116)
T cd02991 6 YSQALNDAKQELRFLLVYLHGDDHQDTDEFC----RNTLCAPEVIEYINTRMLFWACSVAKP-EG---Y-RVSQA-LRER 75 (116)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCccHHHHH----HHHcCCHHHHHHHHcCEEEEEEecCCh-HH---H-HHHHH-hCCC
Confidence 5899999999999999999999 66666 789999999999999999999999863 32 1 12222 3788
Q ss_pred CcCcEEEecCCCC---cccc-ccccCCCCCCCcchHHHHHHHHHH
Q 004888 203 GWPLSVFLSPDLK---PLMG-GTYFPPEDKYGRPGFKTILRKVKD 243 (725)
Q Consensus 203 G~P~~vfl~pdG~---~i~~-~tY~p~~~~~~~~~F~~~L~~i~~ 243 (725)
++|+.+|+.|..+ ++.. .||.+|+ .|++.|+.+.+
T Consensus 76 ~~P~~~~l~~~~~~~~vv~~i~G~~~~~------~ll~~L~~~~~ 114 (116)
T cd02991 76 TYPFLAMIMLKDNRMTIVGRLEGLIQPE------DLINRLTFIMD 114 (116)
T ss_pred CCCEEEEEEecCCceEEEEEEeCCCCHH------HHHHHHHHHHh
Confidence 9999999965443 3433 4677776 68888877653
No 23
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=3.8e-11 Score=114.59 Aligned_cols=116 Identities=18% Similarity=0.291 Sum_probs=96.6
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCC-Ccch--------HHHHHHHHHHh
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE-RPDV--------DKVYMTYVQAL 198 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee-~pd~--------~~~y~~~~q~~ 198 (725)
-++.+.|..++|-+++.|+...|.+|..|.+++|+++++++++..||+.+.+|.+. .|-+ .-.+.+.+|.
T Consensus 32 ~~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~k- 110 (182)
T COG2143 32 FDDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQK- 110 (182)
T ss_pred HHHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHH-
Confidence 57888999999999999999999999999999999999999999999999999863 2211 1122334444
Q ss_pred cCCCCcCcEEEecCCCCcccc-ccccCCCCCCCcchHHHHHHHHHHHHhhchH
Q 004888 199 YGGGGWPLSVFLSPDLKPLMG-GTYFPPEDKYGRPGFKTILRKVKDAWDKKRD 250 (725)
Q Consensus 199 ~g~~G~P~~vfl~pdG~~i~~-~tY~p~~~~~~~~~F~~~L~~i~~~~~~~~~ 250 (725)
+++.++|++||.|.+|+.|.. -||+||+ .|+.+|+.|++-..++-.
T Consensus 111 f~vrstPtfvFfdk~Gk~Il~lPGY~ppe------~Fl~vlkYVa~g~ykd~~ 157 (182)
T COG2143 111 FAVRSTPTFVFFDKTGKTILELPGYMPPE------QFLAVLKYVADGKYKDTK 157 (182)
T ss_pred hccccCceEEEEcCCCCEEEecCCCCCHH------HHHHHHHHHHHHHHhhhc
Confidence 389999999999999998865 5899998 899999999887765544
No 24
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=99.15 E-value=1e-09 Score=121.35 Aligned_cols=164 Identities=14% Similarity=0.136 Sum_probs=105.6
Q ss_pred CCCcchhhhcHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCC--CeEEEEecCC-C
Q 004888 536 HLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQT--HRLQHSFRNG-P 612 (725)
Q Consensus 536 ~lDdKiitsWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~--G~l~~s~~~g-~ 612 (725)
+.||. +..+.++++|++++++++. ..++||+.|+++.+++. ..||++. |++++.-.+. .
T Consensus 86 ~~DD~------aw~~la~l~aye~t~~~~~-----------~~~~yL~~A~~i~~~~~-~~wd~~~cgGGi~W~~~~~~~ 147 (370)
T PF03663_consen 86 YYDDN------AWWALALLRAYELTGDQPS-----------DNPKYLDLAKEIFDFLI-SGWDDTSCGGGIWWSIDDTNS 147 (370)
T ss_dssp BHHHH------HHHHHHHHHHHHHH--H----------------HHHHHHHHHHHHHH-HTB-SGG-GS-BEEET----T
T ss_pred ccChH------HHHHHHHHHHHHhhCCCcc-----------hHHHHHHHHHHHHHHHH-HhcCCccCCCCccccccccCC
Confidence 55775 8999999999999998210 01399999999999999 7778763 7887762110 0
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HccccCCCcccccCCCCCccccccccCCCCCCCChHH
Q 004888 613 SKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDE-LFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNS 691 (725)
Q Consensus 613 ~~~~~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~-~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Ns 691 (725)
...-+-.--.+.++...+.||++||++.||++|+++++.+.+ .++|++.|.+++....+..= .......-.+-.+
T Consensus 148 ~~~~Kna~sN~~~~~laarL~~~t~~~~Yl~~A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c----~~~~~~~~TYNqG 223 (370)
T PF03663_consen 148 GYDYKNAISNGPAAQLAARLYRITGDQTYLDWAKKIYDWMRDSGLIDPSTGLVYDGINIDGNC----TNINKTKWTYNQG 223 (370)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHB--TTS-B--EE-TTSSS-----B-TT---HHHHH
T ss_pred CCCcccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhcceeEECCCcEEEeCCccCCCC----CcCCCceechHHH
Confidence 000111123577888999999999999999999999999999 99999888888754211100 0111223446677
Q ss_pred HHHHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 004888 692 VSVINLVRLASIVAGSKSDYYRQNAEHSLYLR 723 (725)
Q Consensus 692 v~a~~LlrL~~~t~~~~~~~y~~~A~~~l~~~ 723 (725)
++...+..|+.+|+++ ..|++.|++++.+.
T Consensus 224 ~~l~a~~~Ly~~T~~~--~~yl~~A~~la~~~ 253 (370)
T PF03663_consen 224 VFLGAAAYLYNATNDE--QTYLDRAEKLADAA 253 (370)
T ss_dssp HHHHHHHHHHHHH--H---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCc--cHHHHHHHHHHHHH
Confidence 9999999999999762 28999999998764
No 25
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.15 E-value=8.9e-11 Score=112.86 Aligned_cols=85 Identities=20% Similarity=0.190 Sum_probs=59.5
Q ss_pred HHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcC--cEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCc
Q 004888 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW--FVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (725)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~--FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~ 206 (725)
..++.|.+.+|||+|+|+++||++|+.|.... . ++++.++.. ||.|.||.++.+++.+. +++.|+|+
T Consensus 11 ~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l-~--~l~~~~~~~~~~v~v~vd~~~~~~~~~~--------~~V~~iPt 79 (142)
T cd02950 11 TPPEVALSNGKPTLVEFYADWCTVCQEMAPDV-A--KLKQKYGDQVNFVMLNVDNPKWLPEIDR--------YRVDGIPH 79 (142)
T ss_pred CCHHHHHhCCCEEEEEEECCcCHHHHHhHHHH-H--HHHHHhccCeeEEEEEcCCcccHHHHHH--------cCCCCCCE
Confidence 45667788999999999999999999997533 2 344455444 55555544333333333 38899999
Q ss_pred EEEecCCCCcccc-ccccC
Q 004888 207 SVFLSPDLKPLMG-GTYFP 224 (725)
Q Consensus 207 ~vfl~pdG~~i~~-~tY~p 224 (725)
++|++++|+++.. .++.+
T Consensus 80 ~v~~~~~G~~v~~~~G~~~ 98 (142)
T cd02950 80 FVFLDREGNEEGQSIGLQP 98 (142)
T ss_pred EEEECCCCCEEEEEeCCCC
Confidence 9999999998864 34444
No 26
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=99.08 E-value=7.3e-10 Score=122.58 Aligned_cols=195 Identities=15% Similarity=0.143 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCc-hhHHH-HHHHHHHHHHHHHccCC-hHHHHHHHHHHHH
Q 004888 335 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFE-KMLYD-QGQLANVYLDAFSLTKD-VFYSYICRDILDY 411 (725)
Q Consensus 335 ~~~~~~~~~TL~~ma~gGi~D~v~GGF~RYs~D~~W~vPHFE-KMLyD-NA~Ll~~ya~Ay~~t~d-~~y~~vA~~~~~f 411 (725)
++.++.+..+.+.+.. ++++ =+-||.. ||+.. |+++|..|++|+++++. |.|.+.|...++|
T Consensus 473 e~~kkll~e~~e~L~~--aR~k-------------RPkPHLDsKii~sWnGLviSgl~kag~~~~a~~~y~~~a~~~a~f 537 (786)
T KOG2244|consen 473 EKYKKLLGECREKLFD--ARLK-------------RPKPHLDSKIIVSWNGLVISGLAKAGKILKAEPEYTKYAFPVANF 537 (786)
T ss_pred HHHHHHHHHHHHHHHH--Hhhc-------------CCCCCccchheeeccchhhHHHHHHHHHhhcCHHHHHHHHHHHhh
Confidence 4566677777776655 3333 2569965 99999 99999999999999875 4999999999999
Q ss_pred HHHhccCCC-CceeeeccCCCccccccccccCcceEEechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCC
Q 004888 412 LRRDMIGPG-GEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKG 490 (725)
Q Consensus 412 l~~~m~~~~-Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~lg~~~~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g 490 (725)
+.++|.++. +.|...--.+. ..|.++
T Consensus 538 l~k~m~d~~eklliR~scY~g----------------------------------------a~g~ve------------- 564 (786)
T KOG2244|consen 538 LPKDMIDVAEKLLIRGSCYDG----------------------------------------ASGRVE------------- 564 (786)
T ss_pred hhhhhhchhhhheeecccccC----------------------------------------CCccee-------------
Confidence 999999875 43433110110 122211
Q ss_pred cceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCCCCCCcchhhhcHHHHHHHHHHHHHHhhhhhhhhccc
Q 004888 491 KNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFN 570 (725)
Q Consensus 491 ~nvL~~~~~~~~~a~~~g~~~e~~~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal~I~aLa~A~~vl~d~~~~~~~~ 570 (725)
| ..|.-+.+.|+||+ |++|.+|+.+|+..++
T Consensus 565 ----~-------------------------------~n~~~~~~~FldDY------AFlI~gLLDlYea~~~-------- 595 (786)
T KOG2244|consen 565 ----H-------------------------------SNRPSKAPAFLDDY------AFLISGLLDLYEAGGG-------- 595 (786)
T ss_pred ----c-------------------------------cCCccccchhhhhH------HHHHHHHHHHHHccCc--------
Confidence 0 01122456699999 9999999999999987
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCC--------CCcchHHHHHHHHHHHHHHcCCHHHH
Q 004888 571 FPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAP--------GFLDDYAFLISGLLDLYEFGSGTKWL 642 (725)
Q Consensus 571 ~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~--------~~leDyA~li~aLL~LYe~Tgd~~yL 642 (725)
.+||+.|+++.+...+.||| +|+++.+-.++....- +-+...+..+..|+.|+.+++.+.|+
T Consensus 596 --------~e~LkwA~~LQdtqdklFWd--gggYF~Se~~~~~v~vRlkeDhDGAEPs~nSVsahNLvrL~~~~~~e~yl 665 (786)
T KOG2244|consen 596 --------IEWLKWAIKLQDTQDKLFWD--GGGYFISEKTDEDVSVRLKEDHDGAEPSGNSVSAHNLVRLASIVAAESYL 665 (786)
T ss_pred --------hHHHHHHHHHHHHHHHheec--CCceeeeeccCCCcceeeccccCCCCCCccchhhhhHHHHHHHhhHHHHH
Confidence 78999999999999999999 7788877554433222 33445578899999999999999999
Q ss_pred HHHHHHHHHHHHHc
Q 004888 643 VWAIELQNTQDELF 656 (725)
Q Consensus 643 ~~A~~L~~~~~~~F 656 (725)
+.|-+|+..+.++.
T Consensus 666 ~ka~~ll~~fseRl 679 (786)
T KOG2244|consen 666 NKAHRLLAVFSERL 679 (786)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988865
No 27
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.03 E-value=1.1e-09 Score=101.47 Aligned_cols=78 Identities=22% Similarity=0.244 Sum_probs=60.2
Q ss_pred HHHHHHhh--cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCc
Q 004888 129 EAFAEARK--RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (725)
Q Consensus 129 eAl~~Ak~--e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~ 206 (725)
++++.+-+ .++||+|+|+|+||+.|+.|+. +| +++++.+......++||+++.|++.+.| ++.+.||
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P-~l--e~la~~~~~~v~f~kVDvD~~~~la~~~--------~V~~iPT 71 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDE-VL--AKIAEDVSNFAVIYLVDIDEVPDFNKMY--------ELYDPPT 71 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHH-HH--HHHHHHccCceEEEEEECCCCHHHHHHc--------CCCCCCE
Confidence 45556654 6899999999999999999983 22 2344444333457999999999998877 8899999
Q ss_pred EEEecCCCCccc
Q 004888 207 SVFLSPDLKPLM 218 (725)
Q Consensus 207 ~vfl~pdG~~i~ 218 (725)
++|+- +|+.+.
T Consensus 72 f~~fk-~G~~v~ 82 (114)
T cd02954 72 VMFFF-RNKHMK 82 (114)
T ss_pred EEEEE-CCEEEE
Confidence 99885 788774
No 28
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.4e-09 Score=102.76 Aligned_cols=93 Identities=18% Similarity=0.248 Sum_probs=76.4
Q ss_pred CCCCccccchHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc---CcEEEEEcCCCCcchHHHHHHH
Q 004888 118 HNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTY 194 (725)
Q Consensus 118 ~~~V~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~---~FV~VkvD~ee~pd~~~~y~~~ 194 (725)
..-++|++. ++=-++-++.++||+|+|+|.||.+|+.|. |.+.++..+ .|-..|||.++.+++...|
T Consensus 42 ~~~~~~~s~-~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~------P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y--- 111 (150)
T KOG0910|consen 42 ATLFNVQSD-SEFDDKVINSDVPVLVDFHAEWCGPCKMLG------PILEELVSEYAGKFKLYKVDTDEHPELAEDY--- 111 (150)
T ss_pred cccccccCH-HHHHHHHHccCCCEEEEEecCcCccHhHhh------HHHHHHHHhhcCeEEEEEEccccccchHhhc---
Confidence 456888886 788888899999999999999999999997 566555553 6999999999999999888
Q ss_pred HHHhcCCCCcCcEEEecCCCCcccc-ccccCCC
Q 004888 195 VQALYGGGGWPLSVFLSPDLKPLMG-GTYFPPE 226 (725)
Q Consensus 195 ~q~~~g~~G~P~~vfl~pdG~~i~~-~tY~p~~ 226 (725)
++...|+++++ .+|+..-. .|+.|++
T Consensus 112 -----~I~avPtvlvf-knGe~~d~~vG~~~~~ 138 (150)
T KOG0910|consen 112 -----EISAVPTVLVF-KNGEKVDRFVGAVPKE 138 (150)
T ss_pred -----ceeeeeEEEEE-ECCEEeeeecccCCHH
Confidence 88899999988 56776633 4666754
No 29
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.98 E-value=9.1e-10 Score=98.31 Aligned_cols=78 Identities=17% Similarity=0.177 Sum_probs=63.3
Q ss_pred hhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCC
Q 004888 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (725)
Q Consensus 135 k~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG 214 (725)
.+.+|||+|.|+++||++|+.|.... .++++.++.++..+++|.++.+++.+.+ ++.++|+++|+. +|
T Consensus 10 ~~~~~~vlv~f~a~~C~~C~~~~~~l---~~l~~~~~~~v~~~~id~d~~~~l~~~~--------~v~~vPt~~i~~-~g 77 (97)
T cd02949 10 HESDRLILVLYTSPTCGPCRTLKPIL---NKVIDEFDGAVHFVEIDIDEDQEIAEAA--------GIMGTPTVQFFK-DK 77 (97)
T ss_pred HhCCCeEEEEEECCCChhHHHHHHHH---HHHHHHhCCceEEEEEECCCCHHHHHHC--------CCeeccEEEEEE-CC
Confidence 56899999999999999999998643 5677778778999999999888776554 788999999995 78
Q ss_pred Cccccc-cccC
Q 004888 215 KPLMGG-TYFP 224 (725)
Q Consensus 215 ~~i~~~-tY~p 224 (725)
+.+... ++.+
T Consensus 78 ~~v~~~~g~~~ 88 (97)
T cd02949 78 ELVKEISGVKM 88 (97)
T ss_pred eEEEEEeCCcc
Confidence 887543 3444
No 30
>PRK10996 thioredoxin 2; Provisional
Probab=98.97 E-value=1.6e-09 Score=103.71 Aligned_cols=95 Identities=17% Similarity=0.232 Sum_probs=74.4
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcE
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~ 207 (725)
.+.++.+.+++|+|+|.|+++||+.|+.|.. +| .++++.++.++..++||.++.+++.+.| ++.|+|++
T Consensus 42 ~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~-~l--~~l~~~~~~~v~~~~vd~~~~~~l~~~~--------~V~~~Ptl 110 (139)
T PRK10996 42 GETLDKLLQDDLPVVIDFWAPWCGPCRNFAP-IF--EDVAAERSGKVRFVKVNTEAERELSARF--------RIRSIPTI 110 (139)
T ss_pred HHHHHHHHhCCCeEEEEEECCCCHHHHHHHH-HH--HHHHHHhCCCeEEEEEeCCCCHHHHHhc--------CCCccCEE
Confidence 6677778888999999999999999999975 56 4577777778999999999988876655 88999999
Q ss_pred EEecCCCCcccc-ccccCCCCCCCcchHHHHHHH
Q 004888 208 VFLSPDLKPLMG-GTYFPPEDKYGRPGFKTILRK 240 (725)
Q Consensus 208 vfl~pdG~~i~~-~tY~p~~~~~~~~~F~~~L~~ 240 (725)
+|+. +|+++.. .++.+. ..|.+.|++
T Consensus 111 ii~~-~G~~v~~~~G~~~~------e~l~~~l~~ 137 (139)
T PRK10996 111 MIFK-NGQVVDMLNGAVPK------APFDSWLNE 137 (139)
T ss_pred EEEE-CCEEEEEEcCCCCH------HHHHHHHHH
Confidence 9885 8998754 234443 245665554
No 31
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.94 E-value=1.7e-09 Score=95.72 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=58.7
Q ss_pred hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCC
Q 004888 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~ 215 (725)
..+|||+|.|+++||+.|+.|... + .++++.++..+..++||.++.+++.+.| ++.++|+++|++ +|+
T Consensus 10 ~~~~~vlv~f~a~wC~~C~~~~~~-~--~~~~~~~~~~~~~~~vd~~~~~~l~~~~--------~i~~~Pt~~~~~-~g~ 77 (96)
T cd02956 10 STQVPVVVDFWAPRSPPSKELLPL-L--ERLAEEYQGQFVLAKVNCDAQPQIAQQF--------GVQALPTVYLFA-AGQ 77 (96)
T ss_pred cCCCeEEEEEECCCChHHHHHHHH-H--HHHHHHhCCcEEEEEEeccCCHHHHHHc--------CCCCCCEEEEEe-CCE
Confidence 458999999999999999999754 3 4666666667889999999988776655 889999999997 888
Q ss_pred ccc
Q 004888 216 PLM 218 (725)
Q Consensus 216 ~i~ 218 (725)
++.
T Consensus 78 ~~~ 80 (96)
T cd02956 78 PVD 80 (96)
T ss_pred Eee
Confidence 764
No 32
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.93 E-value=3.7e-09 Score=101.57 Aligned_cols=74 Identities=19% Similarity=0.217 Sum_probs=57.9
Q ss_pred hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCC
Q 004888 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~ 215 (725)
+++|||+|+|+++||+.|+.|+. ++ +++++.+.+....+|||+++.|++.+.| ++.+.|+++|+-.+|+
T Consensus 21 ~~~~lVVvdF~A~WCgpCk~m~p-~l--~~la~~~~~~~~~~kVDVDe~~dla~~y--------~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 21 EEERLVVIRFGHDWDETCMQMDE-VL--ASVAETIKNFAVIYLVDITEVPDFNTMY--------ELYDPCTVMFFFRNKH 89 (142)
T ss_pred cCCCEEEEEEECCCChhHHHHHH-HH--HHHHHHcCCceEEEEEECCCCHHHHHHc--------CccCCCcEEEEEECCe
Confidence 37999999999999999999974 33 3566666533455999999999998877 7778888886667887
Q ss_pred -ccccc
Q 004888 216 -PLMGG 220 (725)
Q Consensus 216 -~i~~~ 220 (725)
.+..+
T Consensus 90 ~~vd~~ 95 (142)
T PLN00410 90 IMIDLG 95 (142)
T ss_pred EEEEEe
Confidence 55443
No 33
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.88 E-value=5.1e-09 Score=94.60 Aligned_cols=79 Identities=16% Similarity=0.184 Sum_probs=60.5
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCc
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~ 206 (725)
.+.++.+.++++||+|+|+++||+.|+.|.. +| .++++.+.. ....++||.+ .+++.+.| ++.+.|+
T Consensus 7 ~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p-~l--~~~~~~~~~~~~~~~~vd~d-~~~~~~~~--------~v~~~Pt 74 (102)
T cd02948 7 QEEWEELLSNKGLTVVDVYQEWCGPCKAVVS-LF--KKIKNELGDDLLHFATAEAD-TIDTLKRY--------RGKCEPT 74 (102)
T ss_pred HHHHHHHHccCCeEEEEEECCcCHhHHHHhH-HH--HHHHHHcCCCcEEEEEEeCC-CHHHHHHc--------CCCcCcE
Confidence 6777778889999999999999999999975 34 345555553 3567888888 55555444 8899999
Q ss_pred EEEecCCCCcccc
Q 004888 207 SVFLSPDLKPLMG 219 (725)
Q Consensus 207 ~vfl~pdG~~i~~ 219 (725)
++|+ .+|+++..
T Consensus 75 ~~~~-~~g~~~~~ 86 (102)
T cd02948 75 FLFY-KNGELVAV 86 (102)
T ss_pred EEEE-ECCEEEEE
Confidence 8887 58887754
No 34
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=98.87 E-value=5.2e-08 Score=104.73 Aligned_cols=151 Identities=16% Similarity=0.150 Sum_probs=117.1
Q ss_pred chhhhcHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCc
Q 004888 540 KVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFL 619 (725)
Q Consensus 540 KiitsWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~l 619 (725)
-++....| ++.+|..+++. +| ++|++.|+++++++.+...+.+. .+.+.++.....++.
T Consensus 80 dl~~G~aG-~~~~ll~l~~~-~~----------------~~~l~~a~~~~~~l~~~~~~~~~---~~~~~~~~~~~~G~~ 138 (321)
T cd04791 80 DLASGLAG-IGLALLYFART-GD----------------PALLEAAAKIAELLAEALERGDP---ALLWPDFDRVDHGLL 138 (321)
T ss_pred ccccchHH-HHHHHHHHHhc-CC----------------hHHHHHHHHHHHHHHHHhhcccc---ccccccCCCCCCccc
Confidence 34555555 35566777777 76 78999999999999888765322 233344445567999
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHH
Q 004888 620 DDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVR 699 (725)
Q Consensus 620 eDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~Llr 699 (725)
+++|-.+.+|+.+|++|+|++|++.|+++.+...++|.+.+ ++|+++...+. .....++|++-++.++++
T Consensus 139 hG~aGi~~~L~~l~~~t~d~~~l~~A~~~~~~~~~~~~~~~-~g~~~~~~~~~---------~~~~wchG~aGi~~~l~~ 208 (321)
T cd04791 139 HGWAGIALFLLRLYKATGDSRYLELAEEALDKELARAVVDD-GGLLQVDEGAR---------LLPYLCSGSAGLGLLMLR 208 (321)
T ss_pred cCcHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhccCC-CCceEcCCCCc---------cCcccCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999997654 55555432211 223578999999999999
Q ss_pred HHHhhCCCCchHHHHHHHHHHHHhh
Q 004888 700 LASIVAGSKSDYYRQNAEHSLYLRQ 724 (725)
Q Consensus 700 L~~~t~~~~~~~y~~~A~~~l~~~~ 724 (725)
|+.++++ +.|++.|+++++.+.
T Consensus 209 l~~~~~d---~~~~~~a~~~~~~~~ 230 (321)
T cd04791 209 LEAITGD---KRWRDEADGIAHAAL 230 (321)
T ss_pred HHHhcCC---HHHHHHHHHHHHHHh
Confidence 9999986 789999999987653
No 35
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.84 E-value=7.6e-09 Score=91.48 Aligned_cols=70 Identities=19% Similarity=0.198 Sum_probs=57.2
Q ss_pred CCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCcc
Q 004888 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (725)
Q Consensus 138 ~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i 217 (725)
+|+|+|.|+++||++|+.|.. +| .++++.++.++..++||.++.+++.+.| ++.++|+++|+. +|+++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~-~l--~~l~~~~~~~i~~~~vd~~~~~~~~~~~--------~i~~~Pt~~~~~-~g~~~ 81 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQ-VF--EELAKEAFPSVLFLSIEAEELPEISEKF--------EITAVPTFVFFR-NGTIV 81 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhH-HH--HHHHHHhCCceEEEEEccccCHHHHHhc--------CCccccEEEEEE-CCEEE
Confidence 599999999999999999975 44 3455555568999999999888776655 888999999995 89887
Q ss_pred cc
Q 004888 218 MG 219 (725)
Q Consensus 218 ~~ 219 (725)
..
T Consensus 82 ~~ 83 (97)
T cd02984 82 DR 83 (97)
T ss_pred EE
Confidence 54
No 36
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.82 E-value=6.8e-09 Score=95.89 Aligned_cols=76 Identities=13% Similarity=0.181 Sum_probs=59.0
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcE
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~ 207 (725)
++++..+ ++|+|+|+|+++||+.|+.|+. +| +++++.+.+..+.++||+++.|++.+.| ++...|++
T Consensus 6 d~~i~~~--~~klVVVdF~a~WC~pCk~mdp-~l--~ela~~~~~~~~f~kVDVDev~dva~~y--------~I~amPtf 72 (114)
T cd02986 6 DQAIKST--AEKVLVLRFGRDEDAVCLQLDD-IL--SKTSHDLSKMASIYLVDVDKVPVYTQYF--------DISYIPST 72 (114)
T ss_pred HHHHHhc--CCCEEEEEEeCCCChhHHHHHH-HH--HHHHHHccCceEEEEEeccccHHHHHhc--------CceeCcEE
Confidence 5555555 7999999999999999999973 33 2444444323778999999999998877 77789999
Q ss_pred EEecCCCCcc
Q 004888 208 VFLSPDLKPL 217 (725)
Q Consensus 208 vfl~pdG~~i 217 (725)
+|+ -+|+-+
T Consensus 73 vff-kngkh~ 81 (114)
T cd02986 73 IFF-FNGQHM 81 (114)
T ss_pred EEE-ECCcEE
Confidence 966 667766
No 37
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.81 E-value=1.2e-08 Score=92.36 Aligned_cols=73 Identities=10% Similarity=0.010 Sum_probs=52.0
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCc
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~ 216 (725)
.+|||+|+|+++||+.|+.|.. .|+ ++++.. .+.+.++||.++.++... + ++ .+++.|+||++|+ .+|+.
T Consensus 14 ~~k~vvv~F~a~wC~~C~~~~p-~l~--~la~~~-~~v~~~~vd~d~~~~~~~-l---~~-~~~V~~~Pt~~~~-~~G~~ 83 (103)
T cd02985 14 KGRLVVLEFALKHSGPSVKIYP-TMV--KLSRTC-NDVVFLLVNGDENDSTME-L---CR-REKIIEVPHFLFY-KDGEK 83 (103)
T ss_pred CCCEEEEEEECCCCHhHHHHhH-HHH--HHHHHC-CCCEEEEEECCCChHHHH-H---HH-HcCCCcCCEEEEE-eCCeE
Confidence 4999999999999999999962 222 233333 367889999987653211 1 11 1388999998888 79988
Q ss_pred ccc
Q 004888 217 LMG 219 (725)
Q Consensus 217 i~~ 219 (725)
+..
T Consensus 84 v~~ 86 (103)
T cd02985 84 IHE 86 (103)
T ss_pred EEE
Confidence 754
No 38
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.81 E-value=9.3e-09 Score=92.89 Aligned_cols=74 Identities=19% Similarity=0.282 Sum_probs=58.2
Q ss_pred chHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc---CcEEEEEcCCCCcchHHHHHHHHHHhcCCC
Q 004888 126 WGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGG 202 (725)
Q Consensus 126 ~~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~---~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~ 202 (725)
+++++++++++ +++++|.|+++||+.|+.|.. .++ ++++.++. ++...++|.++.+++.+.| ++.
T Consensus 4 ~~~~~~~~~~~-~~~vlv~f~a~wC~~C~~~~p-~l~--~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~I~ 71 (104)
T cd03000 4 DLDDSFKDVRK-EDIWLVDFYAPWCGHCKKLEP-VWN--EVGAELKSSGSPVRVGKLDATAYSSIASEF--------GVR 71 (104)
T ss_pred echhhhhhhcc-CCeEEEEEECCCCHHHHhhCh-HHH--HHHHHHHhcCCcEEEEEEECccCHhHHhhc--------CCc
Confidence 35788888765 789999999999999999986 454 46666632 4777889998877766554 888
Q ss_pred CcCcEEEec
Q 004888 203 GWPLSVFLS 211 (725)
Q Consensus 203 G~P~~vfl~ 211 (725)
++|+++|+.
T Consensus 72 ~~Pt~~l~~ 80 (104)
T cd03000 72 GYPTIKLLK 80 (104)
T ss_pred cccEEEEEc
Confidence 999999994
No 39
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.81 E-value=1.6e-08 Score=89.52 Aligned_cols=78 Identities=23% Similarity=0.389 Sum_probs=63.2
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc--CcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcC
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~--~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P 205 (725)
++.++++.+++++++|.|+++||+.|+.|+. .| +++++.+.. ++..+++|.++.+++.+.| ++.++|
T Consensus 3 ~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~-~~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--------~i~~~P 71 (102)
T TIGR01126 3 ASNFDDIVLSNKDVLVEFYAPWCGHCKNLAP-EY--EKLAKELKGDPDIVLAKVDATAEKDLASRF--------GVSGFP 71 (102)
T ss_pred hhhHHHHhccCCcEEEEEECCCCHHHHhhCh-HH--HHHHHHhccCCceEEEEEEccchHHHHHhC--------CCCcCC
Confidence 3566666668999999999999999999964 44 457777765 6899999999887776555 888999
Q ss_pred cEEEecCCCCc
Q 004888 206 LSVFLSPDLKP 216 (725)
Q Consensus 206 ~~vfl~pdG~~ 216 (725)
+++|+++++.+
T Consensus 72 ~~~~~~~~~~~ 82 (102)
T TIGR01126 72 TIKFFPKGKKP 82 (102)
T ss_pred EEEEecCCCcc
Confidence 99999988763
No 40
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=98.80 E-value=2.6e-07 Score=100.76 Aligned_cols=150 Identities=21% Similarity=0.290 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec-CCCCCCCC--CcchHH
Q 004888 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR-NGPSKAPG--FLDDYA 623 (725)
Q Consensus 547 al~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~-~g~~~~~~--~leDyA 623 (725)
.|.+..|+++++.+|| ++|++.|.+-+....++++|+++|.++|.+. +|...... ..=.++
T Consensus 127 ~M~~p~l~~~~~~tgd----------------~~~~~~a~~q~~~~~~~~~d~~tGl~~h~~~~~~~~~~s~~~WsRG~g 190 (336)
T PF07470_consen 127 YMNLPFLAWAGKLTGD----------------PKYLDEAVRQFRLTRKYLYDPETGLYYHGYTYQGYADWSDSFWSRGNG 190 (336)
T ss_dssp HHHHHHHHHHHHHHTG----------------HHHHHHHHHHHHHHHHHHB-TTTSSBESEEETTSSSTTST--BHHHHH
T ss_pred cccHHHHHHHHHHHCC----------------cHHHHHHHHHHHHHHHhccCCCCCceeeccCCCCCcCcccccCcchhh
Confidence 3567889999999998 7899999999999999999999999998864 34332222 334789
Q ss_pred HHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHH
Q 004888 624 FLISGLLDLYEFGSG-----TKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLV 698 (725)
Q Consensus 624 ~li~aLL~LYe~Tgd-----~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~Ll 698 (725)
+++.|++++|+.+.+ +.+++.++++.+.+. .+.| +.|.|+....+. . .......|+.+++|..|+
T Consensus 191 W~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~-~~q~-~~G~w~~~~~~~-~-------~~~~~etSatA~~a~~l~ 260 (336)
T PF07470_consen 191 WAIYGLAEVLEYLPEDHPERDELLEIAKKLADALA-RYQD-EDGLWYQDLDDP-D-------PGNYRETSATAMFAYGLL 260 (336)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH-TTST-TTSBEBSBTTTT-T-------TTS-BEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHH-hcCC-CCCCcceecCCC-C-------CCCcccHHHHHHHHHHHH
Confidence 999999999999865 677888888887754 4556 456665543321 1 112234699999999998
Q ss_pred H-HHHhhCCCCchHHHHHHHHHHHHhh
Q 004888 699 R-LASIVAGSKSDYYRQNAEHSLYLRQ 724 (725)
Q Consensus 699 r-L~~~t~~~~~~~y~~~A~~~l~~~~ 724 (725)
+ +..-.-+ .+.|++.|++.++.+.
T Consensus 261 ~gi~~g~~d--~~~y~~~a~~a~~~l~ 285 (336)
T PF07470_consen 261 RGIRLGLLD--PEEYRPAAEKALEALL 285 (336)
T ss_dssp HHHHTTSST--HHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCc--cHHHHHHHHHHHHHHH
Confidence 7 3333222 4789999999988763
No 41
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.76 E-value=2.5e-08 Score=91.07 Aligned_cols=79 Identities=19% Similarity=0.347 Sum_probs=60.6
Q ss_pred HHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCC-cchHHHHHHHHHHhcCCCCcCc
Q 004888 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREER-PDVDKVYMTYVQALYGGGGWPL 206 (725)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~-pd~~~~y~~~~q~~~g~~G~P~ 206 (725)
+++..+++.+||+||.|+++||+.|+.|... | .++++.+.. +++..+||.+.. .++.. ..+++.++|+
T Consensus 12 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~-~--~~la~~~~~~~~~~~~vd~d~~~~~~~~-------~~~~v~~~Pt 81 (109)
T cd02993 12 EALAKGERRNQSTLVVLYAPWCPFCQAMEAS-Y--EELAEKLAGSNVKVAKFNADGEQREFAK-------EELQLKSFPT 81 (109)
T ss_pred HHHHhhhhcCCCEEEEEECCCCHHHHHHhHH-H--HHHHHHhccCCeEEEEEECCccchhhHH-------hhcCCCcCCE
Confidence 4666677899999999999999999999865 5 357777765 599999999863 33321 1237889999
Q ss_pred EEEecCCCCcc
Q 004888 207 SVFLSPDLKPL 217 (725)
Q Consensus 207 ~vfl~pdG~~i 217 (725)
++|++++++..
T Consensus 82 i~~f~~~~~~~ 92 (109)
T cd02993 82 ILFFPKNSRQP 92 (109)
T ss_pred EEEEcCCCCCc
Confidence 99998877543
No 42
>PHA02278 thioredoxin-like protein
Probab=98.76 E-value=2.1e-08 Score=91.46 Aligned_cols=84 Identities=8% Similarity=0.059 Sum_probs=56.8
Q ss_pred HHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCC----cchHHHHHHHHHHhcCCCCc
Q 004888 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER----PDVDKVYMTYVQALYGGGGW 204 (725)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~----pd~~~~y~~~~q~~~g~~G~ 204 (725)
+-+++.-++++||+|+|+|+||+.|+.|.. +|+ ++++..+.....++||+++. +++.+.| ++.++
T Consensus 5 ~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p-~l~--~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~--------~I~~i 73 (103)
T PHA02278 5 VDLNTAIRQKKDVIVMITQDNCGKCEILKS-VIP--MFQESGDIKKPILTLNLDAEDVDREKAVKLF--------DIMST 73 (103)
T ss_pred HHHHHHHhCCCcEEEEEECCCCHHHHhHHH-HHH--HHHhhhcCCceEEEEECCccccccHHHHHHC--------CCccc
Confidence 445555578999999999999999999983 221 22222222334677888764 4555444 88999
Q ss_pred CcEEEecCCCCccccc-cccC
Q 004888 205 PLSVFLSPDLKPLMGG-TYFP 224 (725)
Q Consensus 205 P~~vfl~pdG~~i~~~-tY~p 224 (725)
||++|+. +|+.+... +..+
T Consensus 74 PT~i~fk-~G~~v~~~~G~~~ 93 (103)
T PHA02278 74 PVLIGYK-DGQLVKKYEDQVT 93 (103)
T ss_pred cEEEEEE-CCEEEEEEeCCCC
Confidence 9999885 68877543 3344
No 43
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.76 E-value=2.5e-08 Score=89.35 Aligned_cols=79 Identities=15% Similarity=0.186 Sum_probs=62.7
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcE
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~ 207 (725)
.+-+++..+++|+++|.|+++||+.|+.|.. .|. ++++.+...+..++||.++.+++.+.| ++.++|++
T Consensus 8 ~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p-~~~--~~a~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~ 76 (101)
T cd03003 8 RGDFDAAVNSGEIWFVNFYSPRCSHCHDLAP-TWR--EFAKEMDGVIRIGAVNCGDDRMLCRSQ--------GVNSYPSL 76 (101)
T ss_pred HhhHHHHhcCCCeEEEEEECCCChHHHHhHH-HHH--HHHHHhcCceEEEEEeCCccHHHHHHc--------CCCccCEE
Confidence 3455666677899999999999999999974 443 466777767888999999888776555 88899999
Q ss_pred EEecCCCCccc
Q 004888 208 VFLSPDLKPLM 218 (725)
Q Consensus 208 vfl~pdG~~i~ 218 (725)
+++ ++|+++.
T Consensus 77 ~~~-~~g~~~~ 86 (101)
T cd03003 77 YVF-PSGMNPE 86 (101)
T ss_pred EEE-cCCCCcc
Confidence 988 7887653
No 44
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.73 E-value=3.1e-08 Score=88.33 Aligned_cols=79 Identities=20% Similarity=0.250 Sum_probs=59.2
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHh--cCcEEEEEcCCC--CcchHHHHHHHHHHhcCCCC
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREE--RPDVDKVYMTYVQALYGGGG 203 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln--~~FV~VkvD~ee--~pd~~~~y~~~~q~~~g~~G 203 (725)
+..++.+.+++++++|.|+++||++|+.|.... .++++.+. ..++.+++|.++ .+.+.+.| ++.+
T Consensus 7 ~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~--------~i~~ 75 (104)
T cd02997 7 DEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEF---TKAATELKEDGKGVLAAVDCTKPEHDALKEEY--------NVKG 75 (104)
T ss_pred hHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHH---HHHHHHHhhCCceEEEEEECCCCccHHHHHhC--------CCcc
Confidence 456777778899999999999999999997654 25555565 468888999987 55443333 8889
Q ss_pred cCcEEEecCCCCccc
Q 004888 204 WPLSVFLSPDLKPLM 218 (725)
Q Consensus 204 ~P~~vfl~pdG~~i~ 218 (725)
+|+++++ ++|+++.
T Consensus 76 ~Pt~~~~-~~g~~~~ 89 (104)
T cd02997 76 FPTFKYF-ENGKFVE 89 (104)
T ss_pred ccEEEEE-eCCCeeE
Confidence 9998777 5777653
No 45
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.72 E-value=2.1e-08 Score=92.12 Aligned_cols=73 Identities=15% Similarity=0.154 Sum_probs=58.1
Q ss_pred hhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCC
Q 004888 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (725)
Q Consensus 135 k~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pd 213 (725)
+..+||++|.|+++||+.|+.|.. +|. ++++.+.. ++..++||.++.+++.+.+ |+.++|+++|+ .+
T Consensus 21 ~~~~~~vlV~F~a~wC~~C~~~~p-~~~--~l~~~~~~~~v~~~~vd~d~~~~l~~~~--------~V~~~Pt~~i~-~~ 88 (111)
T cd02963 21 KSFKKPYLIKITSDWCFSCIHIEP-VWK--EVIQELEPLGVGIATVNAGHERRLARKL--------GAHSVPAIVGI-IN 88 (111)
T ss_pred ccCCCeEEEEEECCccHhHHHhhH-HHH--HHHHHHHhcCceEEEEeccccHHHHHHc--------CCccCCEEEEE-EC
Confidence 347899999999999999999975 344 66666654 5888999998877765554 88999999999 48
Q ss_pred CCcccc
Q 004888 214 LKPLMG 219 (725)
Q Consensus 214 G~~i~~ 219 (725)
|+.+..
T Consensus 89 g~~~~~ 94 (111)
T cd02963 89 GQVTFY 94 (111)
T ss_pred CEEEEE
Confidence 887643
No 46
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=2.9e-08 Score=91.04 Aligned_cols=75 Identities=21% Similarity=0.267 Sum_probs=59.4
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc--CcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcC
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~--~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P 205 (725)
+.....+.+.+|+|+|+|+++||+.|+.|+ |.+.++-.+ +-+.+|||+++.+++.+.+ ++.+.|
T Consensus 11 ~~~~~~~~~~~kliVvdF~a~wCgPCk~i~------P~~~~La~~y~~v~Flkvdvde~~~~~~~~--------~V~~~P 76 (106)
T KOG0907|consen 11 DLVLSAAEAGDKLVVVDFYATWCGPCKAIA------PKFEKLAEKYPDVVFLKVDVDELEEVAKEF--------NVKAMP 76 (106)
T ss_pred HHHHHHhhCCCCeEEEEEECCCCcchhhhh------hHHHHHHHHCCCCEEEEEecccCHhHHHhc--------CceEee
Confidence 556667777789999999999999999998 566555543 4789999999855555554 888999
Q ss_pred cEEEecCCCCcc
Q 004888 206 LSVFLSPDLKPL 217 (725)
Q Consensus 206 ~~vfl~pdG~~i 217 (725)
|++|+ .+|+.+
T Consensus 77 Tf~f~-k~g~~~ 87 (106)
T KOG0907|consen 77 TFVFY-KGGEEV 87 (106)
T ss_pred EEEEE-ECCEEE
Confidence 99999 566655
No 47
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.70 E-value=4.3e-08 Score=89.05 Aligned_cols=78 Identities=14% Similarity=0.217 Sum_probs=61.1
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc------CcEEEEEcCCCCcchHHHHHHHHHHhcCC
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND------WFVSIKVDREERPDVDKVYMTYVQALYGG 201 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~------~FV~VkvD~ee~pd~~~~y~~~~q~~~g~ 201 (725)
.+.++++.+++++++|.|+++||..|+.|.. +|+ ++++.+++ .+..++||.++.+++.+.| ++
T Consensus 8 ~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p-~~~--~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~--------~v 76 (108)
T cd02996 8 SGNIDDILQSAELVLVNFYADWCRFSQMLHP-IFE--EAAAKIKEEFPDAGKVVWGKVDCDKESDIADRY--------RI 76 (108)
T ss_pred HhhHHHHHhcCCEEEEEEECCCCHHHHhhHH-HHH--HHHHHHhhccCCCCcEEEEEEECCCCHHHHHhC--------CC
Confidence 5677778888999999999999999999985 343 34444432 3778899999888776555 88
Q ss_pred CCcCcEEEecCCCCcc
Q 004888 202 GGWPLSVFLSPDLKPL 217 (725)
Q Consensus 202 ~G~P~~vfl~pdG~~i 217 (725)
.++|+++|+ ++|++.
T Consensus 77 ~~~Ptl~~~-~~g~~~ 91 (108)
T cd02996 77 NKYPTLKLF-RNGMMM 91 (108)
T ss_pred CcCCEEEEE-eCCcCc
Confidence 999999988 678743
No 48
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.69 E-value=7.4e-08 Score=84.89 Aligned_cols=78 Identities=22% Similarity=0.356 Sum_probs=60.9
Q ss_pred HHHHH-hhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEE
Q 004888 130 AFAEA-RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (725)
Q Consensus 130 Al~~A-k~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~v 208 (725)
.++.. ++++|+|+|.|+++||+.|+.|.. .| .++++.++.+...++||.++.+.+.+.| ++.++|+++
T Consensus 5 ~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~-~l--~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~P~~~ 73 (101)
T TIGR01068 5 NFDETIASSDKPVLVDFWAPWCGPCKMIAP-IL--EELAKEYEGKVKFVKLNVDENPDIAAKY--------GIRSIPTLL 73 (101)
T ss_pred HHHHHHhhcCCcEEEEEECCCCHHHHHhCH-HH--HHHHHHhcCCeEEEEEECCCCHHHHHHc--------CCCcCCEEE
Confidence 34443 445779999999999999999975 44 4666677777999999999887665544 888999999
Q ss_pred EecCCCCcccc
Q 004888 209 FLSPDLKPLMG 219 (725)
Q Consensus 209 fl~pdG~~i~~ 219 (725)
|+ ++|+++..
T Consensus 74 ~~-~~g~~~~~ 83 (101)
T TIGR01068 74 LF-KNGKEVDR 83 (101)
T ss_pred EE-eCCcEeee
Confidence 99 78887643
No 49
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.68 E-value=7.2e-08 Score=84.18 Aligned_cols=79 Identities=24% Similarity=0.368 Sum_probs=65.2
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHH--hcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcC
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLL--NDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~l--n~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P 205 (725)
++.+..+.+++++++|.|+++||++|+.|.. .| .++++.+ +.++..++||.++.+.+.+.| ++.++|
T Consensus 5 ~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~-~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~i~~~P 73 (101)
T cd02961 5 DDNFDELVKDSKDVLVEFYAPWCGHCKALAP-EY--EKLAKELKGDGKVVVAKVDCTANNDLCSEY--------GVRGYP 73 (101)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHhhhH-HH--HHHHHHhccCCceEEEEeeccchHHHHHhC--------CCCCCC
Confidence 5678888899999999999999999999975 44 3566677 578999999999877666555 889999
Q ss_pred cEEEecCCCCcc
Q 004888 206 LSVFLSPDLKPL 217 (725)
Q Consensus 206 ~~vfl~pdG~~i 217 (725)
+++++.++|+..
T Consensus 74 t~~~~~~~~~~~ 85 (101)
T cd02961 74 TIKLFPNGSKEP 85 (101)
T ss_pred EEEEEcCCCccc
Confidence 999999886444
No 50
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.67 E-value=6.4e-08 Score=87.01 Aligned_cols=79 Identities=15% Similarity=0.163 Sum_probs=59.6
Q ss_pred HHHHHH-hhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcE
Q 004888 129 EAFAEA-RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (725)
Q Consensus 129 eAl~~A-k~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~ 207 (725)
+.++.. +..++|++|.|+++||+.|+.|.. .| .++++.+...+..++||.++.+++.+.| ++.++|++
T Consensus 9 ~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p-~~--~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~i~~~Pt~ 77 (104)
T cd03004 9 EDFPELVLNRKEPWLVDFYAPWCGPCQALLP-EL--RKAARALKGKVKVGSVDCQKYESLCQQA--------NIRAYPTI 77 (104)
T ss_pred HHHHHHHhcCCCeEEEEEECCCCHHHHHHHH-HH--HHHHHHhcCCcEEEEEECCchHHHHHHc--------CCCcccEE
Confidence 344444 567889999999999999999974 33 2455555556778899999888766554 88999999
Q ss_pred EEecCCCCccc
Q 004888 208 VFLSPDLKPLM 218 (725)
Q Consensus 208 vfl~pdG~~i~ 218 (725)
+++..+|++..
T Consensus 78 ~~~~~g~~~~~ 88 (104)
T cd03004 78 RLYPGNASKYH 88 (104)
T ss_pred EEEcCCCCCce
Confidence 99977756653
No 51
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.65 E-value=6.9e-08 Score=94.09 Aligned_cols=114 Identities=15% Similarity=0.116 Sum_probs=70.6
Q ss_pred HHHHHHHh--hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHh-cCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCc
Q 004888 128 EEAFAEAR--KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (725)
Q Consensus 128 ~eAl~~Ak--~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln-~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~ 204 (725)
++.+++.. ..+++++|+|+++||+.|+.|.. +|+ ++++.++ .++..++||.++.|++.+.|. ++.-+++.++
T Consensus 35 ~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p-~l~--~la~~~~~~~v~f~~VDvd~~~~la~~~~--V~~~~~v~~~ 109 (152)
T cd02962 35 PKTLEEELERDKRVTWLVEFFTTWSPECVNFAP-VFA--ELSLKYNNNNLKFGKIDIGRFPNVAEKFR--VSTSPLSKQL 109 (152)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHH-HHH--HHHHHcccCCeEEEEEECCCCHHHHHHcC--ceecCCcCCC
Confidence 34455543 34689999999999999999974 343 4455554 358899999999998877661 0101123459
Q ss_pred CcEEEecCCCCccccccccCCCCCCCcchHHHHHHHHHHHHhhc
Q 004888 205 PLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDKK 248 (725)
Q Consensus 205 P~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i~~~~~~~ 248 (725)
||++++. +|+++....+ +..++.+.-++---++.|.+.++-+
T Consensus 110 PT~ilf~-~Gk~v~r~~G-~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (152)
T cd02962 110 PTIILFQ-GGKEVARRPY-YNDSKGRAVPFTFSKENVIRHFDLD 151 (152)
T ss_pred CEEEEEE-CCEEEEEEec-cccCccccccccccHHHHHHhcccC
Confidence 9999885 8999865322 1122222222222346665555433
No 52
>PTZ00051 thioredoxin; Provisional
Probab=98.64 E-value=7.5e-08 Score=85.40 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=60.5
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcE
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~ 207 (725)
++.+.++.+++++++|.|+++||..|+.|.. .|. ++++... ++..++||.++.+++.+.| ++.++|++
T Consensus 8 ~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~-~l~--~l~~~~~-~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~ 75 (98)
T PTZ00051 8 QAEFESTLSQNELVIVDFYAEWCGPCKRIAP-FYE--ECSKEYT-KMVFVKVDVDELSEVAEKE--------NITSMPTF 75 (98)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCHHHHHHhH-HHH--HHHHHcC-CcEEEEEECcchHHHHHHC--------CCceeeEE
Confidence 5677888889999999999999999999974 332 3433332 5788899998766655444 88899998
Q ss_pred EEecCCCCcccc
Q 004888 208 VFLSPDLKPLMG 219 (725)
Q Consensus 208 vfl~pdG~~i~~ 219 (725)
+++ .+|+++..
T Consensus 76 ~~~-~~g~~~~~ 86 (98)
T PTZ00051 76 KVF-KNGSVVDT 86 (98)
T ss_pred EEE-eCCeEEEE
Confidence 877 79988754
No 53
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.61 E-value=8.6e-08 Score=88.87 Aligned_cols=77 Identities=13% Similarity=-0.047 Sum_probs=61.1
Q ss_pred HHHHHHH---hhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchH-HHHHHHHHHhcCCCC
Q 004888 128 EEAFAEA---RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVD-KVYMTYVQALYGGGG 203 (725)
Q Consensus 128 ~eAl~~A---k~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~-~~y~~~~q~~~g~~G 203 (725)
++-+.++ .+++++++|.|+++||+.|+.|.. .|+ ++++.++.....++||.++.+++. +.| ++.|
T Consensus 16 ~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p-~~~--~la~~~~~~v~~~~Vd~d~~~~l~~~~~--------~I~~ 84 (113)
T cd03006 16 KGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQ-EFE--QVAQKLSDQVLFVAINCWWPQGKCRKQK--------HFFY 84 (113)
T ss_pred hhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHH-HHH--HHHHHhcCCeEEEEEECCCChHHHHHhc--------CCcc
Confidence 4555655 689999999999999999999974 443 677777767778999999888775 345 7889
Q ss_pred cCcEEEecCCCCc
Q 004888 204 WPLSVFLSPDLKP 216 (725)
Q Consensus 204 ~P~~vfl~pdG~~ 216 (725)
+||++++ .+|+.
T Consensus 85 ~PTl~lf-~~g~~ 96 (113)
T cd03006 85 FPVIHLY-YRSRG 96 (113)
T ss_pred cCEEEEE-ECCcc
Confidence 9999999 56764
No 54
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.60 E-value=6.9e-08 Score=87.22 Aligned_cols=67 Identities=13% Similarity=0.277 Sum_probs=53.0
Q ss_pred hhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCC-CCcchHHHHHHHHHHhcCCCCcCcEEEecCC
Q 004888 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE-ERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (725)
Q Consensus 135 k~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~e-e~pd~~~~y~~~~q~~~g~~G~P~~vfl~pd 213 (725)
...||+|+|.|+++||+.|+.|.. .|+ ++++.+. .+..++||.+ +.+++.+.| ++.++||++|+++.
T Consensus 15 ~~~g~~vlV~F~a~WC~~C~~~~p-~l~--~la~~~~-~~~~~~vd~~~~~~~l~~~~--------~V~~~PT~~lf~~g 82 (100)
T cd02999 15 FNREDYTAVLFYASWCPFSASFRP-HFN--ALSSMFP-QIRHLAIEESSIKPSLLSRY--------GVVGFPTILLFNST 82 (100)
T ss_pred hcCCCEEEEEEECCCCHHHHhHhH-HHH--HHHHHhc-cCceEEEECCCCCHHHHHhc--------CCeecCEEEEEcCC
Confidence 467999999999999999999974 333 3555554 5778899988 677776655 88999999999754
No 55
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.58 E-value=1e-07 Score=81.39 Aligned_cols=75 Identities=24% Similarity=0.356 Sum_probs=56.5
Q ss_pred HHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEe
Q 004888 131 FAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (725)
Q Consensus 131 l~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl 210 (725)
++.+-++++|++|.|+++||++|+.|.. .+ .++++. +.++..+++|.++.+++.+.| ++.++|+++++
T Consensus 3 ~~~~~~~~~~~ll~~~~~~C~~C~~~~~-~~--~~~~~~-~~~~~~~~i~~~~~~~~~~~~--------~v~~~P~~~~~ 70 (93)
T cd02947 3 FEELIKSAKPVVVDFWAPWCGPCKAIAP-VL--EELAEE-YPKVKFVKVDVDENPELAEEY--------GVRSIPTFLFF 70 (93)
T ss_pred hHHHHhcCCcEEEEEECCCChhHHHhhH-HH--HHHHHH-CCCceEEEEECCCChhHHHhc--------CcccccEEEEE
Confidence 4556666799999999999999999985 33 233333 468999999999877665554 78899999988
Q ss_pred cCCCCccc
Q 004888 211 SPDLKPLM 218 (725)
Q Consensus 211 ~pdG~~i~ 218 (725)
. +|+++.
T Consensus 71 ~-~g~~~~ 77 (93)
T cd02947 71 K-NGKEVD 77 (93)
T ss_pred E-CCEEEE
Confidence 5 566553
No 56
>PRK09381 trxA thioredoxin; Provisional
Probab=98.56 E-value=2.4e-07 Score=84.13 Aligned_cols=73 Identities=16% Similarity=0.258 Sum_probs=57.9
Q ss_pred hhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCC
Q 004888 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (725)
Q Consensus 135 k~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG 214 (725)
.+.++|++|.|+++||+.|+.|.. .|+ ++++.++..+..++||.+..+.+.+.| ++.++|+++|+ ++|
T Consensus 18 ~~~~~~vvv~f~~~~C~~C~~~~p-~~~--~l~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~G 85 (109)
T PRK09381 18 LKADGAILVDFWAEWCGPCKMIAP-ILD--EIADEYQGKLTVAKLNIDQNPGTAPKY--------GIRGIPTLLLF-KNG 85 (109)
T ss_pred hcCCCeEEEEEECCCCHHHHHHhH-HHH--HHHHHhCCCcEEEEEECCCChhHHHhC--------CCCcCCEEEEE-eCC
Confidence 456999999999999999999974 333 455556566788999999888765544 78899999999 689
Q ss_pred Ccccc
Q 004888 215 KPLMG 219 (725)
Q Consensus 215 ~~i~~ 219 (725)
+++..
T Consensus 86 ~~~~~ 90 (109)
T PRK09381 86 EVAAT 90 (109)
T ss_pred eEEEE
Confidence 87753
No 57
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.55 E-value=2.6e-07 Score=91.49 Aligned_cols=79 Identities=16% Similarity=0.182 Sum_probs=57.2
Q ss_pred hhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHH---------------HHHHhc
Q 004888 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMT---------------YVQALY 199 (725)
Q Consensus 135 k~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~---------------~~q~~~ 199 (725)
...+|+|+|+|+++||+.|+.+. |.+.++.++++..|.|+.++.++-...|.+ .....+
T Consensus 60 ~~~gk~vll~F~a~wC~~C~~~~------p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~ 133 (173)
T TIGR00385 60 FIQGKPVLLNVWASWCPPCRAEH------PYLNELAKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDL 133 (173)
T ss_pred hcCCCEEEEEEECCcCHHHHHHH------HHHHHHHHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhc
Confidence 34689999999999999999875 566666667788888887543322222211 011234
Q ss_pred CCCCcCcEEEecCCCCcccc
Q 004888 200 GGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 200 g~~G~P~~vfl~pdG~~i~~ 219 (725)
++.|+|++++++++|+.++.
T Consensus 134 ~v~~~P~~~~id~~G~i~~~ 153 (173)
T TIGR00385 134 GVYGAPETFLVDGNGVILYR 153 (173)
T ss_pred CCeeCCeEEEEcCCceEEEE
Confidence 77899999999999998875
No 58
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.55 E-value=2e-07 Score=84.15 Aligned_cols=69 Identities=19% Similarity=0.313 Sum_probs=54.5
Q ss_pred hhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCC--CcchHHHHHHHHHHhcCCCCcCcEEEecC
Q 004888 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE--RPDVDKVYMTYVQALYGGGGWPLSVFLSP 212 (725)
Q Consensus 135 k~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee--~pd~~~~y~~~~q~~~g~~G~P~~vfl~p 212 (725)
++.+||++|.|+++||+.|+.|.. .|. ++++.++..+..++||.++ .+++.+.| ++.++|+++|+.+
T Consensus 15 ~~~~~~~lv~f~a~wC~~C~~~~~-~~~--~~a~~~~~~~~~~~v~~~~~~~~~~~~~~--------~i~~~Pt~~~~~~ 83 (109)
T cd03002 15 HNTNYTTLVEFYAPWCGHCKNLKP-EYA--KAAKELDGLVQVAAVDCDEDKNKPLCGKY--------GVQGFPTLKVFRP 83 (109)
T ss_pred hcCCCeEEEEEECCCCHHHHhhCh-HHH--HHHHHhcCCceEEEEecCccccHHHHHHc--------CCCcCCEEEEEeC
Confidence 567999999999999999999975 343 5677777667777888876 55554444 8899999999988
Q ss_pred CC
Q 004888 213 DL 214 (725)
Q Consensus 213 dG 214 (725)
++
T Consensus 84 ~~ 85 (109)
T cd03002 84 PK 85 (109)
T ss_pred CC
Confidence 76
No 59
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=98.54 E-value=7.3e-06 Score=89.73 Aligned_cols=155 Identities=17% Similarity=0.133 Sum_probs=110.2
Q ss_pred hhcHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeE-EEEecCCCCCCCCCcch
Q 004888 543 VSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRL-QHSFRNGPSKAPGFLDD 621 (725)
Q Consensus 543 tsWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l-~~s~~~g~~~~~~~leD 621 (725)
..-.++++.|++.++.+.+ ++..+.-..+.+.+.+++++++.+.- +...+.+. .+--.+.
T Consensus 115 ~Y~haFallA~A~~a~a~~-----------------~~a~~~~~~a~~~l~~~~~~~~~pl~~~e~~~~~~--~pl~sNp 175 (388)
T COG2942 115 LYGHAFALLAAAHAATAGP-----------------PRADELLDEALDVLERRFWREEHPLGGFEEDNPGS--APLGSNP 175 (388)
T ss_pred HHHHHHHHHHHHHHHhcCC-----------------hhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCC--CccCCCc
Confidence 3345888889998877654 45555666666777888888764321 11122222 2224567
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHHHH
Q 004888 622 YAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLA 701 (725)
Q Consensus 622 yA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~ 701 (725)
++++.+|+|..|++||+..|++.|.+|.+.+..+|.|.++|.-.+....+..+....+. -+.+|-+----+.-|++++
T Consensus 176 ~MHl~EA~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~dW~p~~~frg--~~~ePGH~fEW~~Lll~~a 253 (388)
T COG2942 176 HMHLLEAMLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFDHDWNPAHGFRG--RGIEPGHQFEWAWLLLDIA 253 (388)
T ss_pred chHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhccccCCcCCCccc--CCCCCchHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999998655444444433222221 2467888888999999999
Q ss_pred HhhCCCCchHHHHHHHHHHH
Q 004888 702 SIVAGSKSDYYRQNAEHSLY 721 (725)
Q Consensus 702 ~~t~~~~~~~y~~~A~~~l~ 721 (725)
...++ ..-...|+.++.
T Consensus 254 ~~~~~---~~l~~~A~~lf~ 270 (388)
T COG2942 254 RRRGR---AWLIEAARRLFD 270 (388)
T ss_pred HHhch---hHHHHHHHHHHH
Confidence 99886 456666766654
No 60
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.53 E-value=2.6e-07 Score=92.51 Aligned_cols=78 Identities=10% Similarity=0.138 Sum_probs=56.5
Q ss_pred hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHH---------------HHHhcC
Q 004888 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTY---------------VQALYG 200 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~---------------~q~~~g 200 (725)
..|||++|.|+++||+.|+.+. |.+.++-++++..|-|+.++.++..+.|.+- ....+|
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~------p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 139 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEH------QYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLG 139 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHH------HHHHHHHHcCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcC
Confidence 3699999999999999999886 4555555557777888776554433333221 112357
Q ss_pred CCCcCcEEEecCCCCcccc
Q 004888 201 GGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 201 ~~G~P~~vfl~pdG~~i~~ 219 (725)
+.|+|+++|+|++|++.+.
T Consensus 140 v~~~P~t~vid~~G~i~~~ 158 (185)
T PRK15412 140 VYGAPETFLIDGNGIIRYR 158 (185)
T ss_pred CCcCCeEEEECCCceEEEE
Confidence 8899999999999998865
No 61
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.53 E-value=2.5e-07 Score=85.51 Aligned_cols=78 Identities=21% Similarity=0.156 Sum_probs=60.7
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcE
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~ 207 (725)
.+.+.++.+++++|+|.|+++||..|+.|.. ++. ++++.. .+...++||.++.+++.+.| ++.++|+.
T Consensus 12 ~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p-~l~--~la~~~-~~i~f~~Vd~~~~~~l~~~~--------~v~~vPt~ 79 (113)
T cd02989 12 EKEFFEIVKSSERVVCHFYHPEFFRCKIMDK-HLE--ILAKKH-LETKFIKVNAEKAPFLVEKL--------NIKVLPTV 79 (113)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCccHHHHHH-HHH--HHHHHc-CCCEEEEEEcccCHHHHHHC--------CCccCCEE
Confidence 4677777788899999999999999999983 221 233322 24788999999999887766 88999999
Q ss_pred EEecCCCCccc
Q 004888 208 VFLSPDLKPLM 218 (725)
Q Consensus 208 vfl~pdG~~i~ 218 (725)
+++. +|+++.
T Consensus 80 l~fk-~G~~v~ 89 (113)
T cd02989 80 ILFK-NGKTVD 89 (113)
T ss_pred EEEE-CCEEEE
Confidence 9886 777774
No 62
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.53 E-value=1.6e-07 Score=83.24 Aligned_cols=77 Identities=25% Similarity=0.313 Sum_probs=59.3
Q ss_pred HHHHHhh-cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEE
Q 004888 130 AFAEARK-RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (725)
Q Consensus 130 Al~~Ak~-e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~v 208 (725)
.++..-. ++++++|.|+++||+.|+.|.. .|. ++++.+...+..++||.++.+++.+.| ++.++|+++
T Consensus 8 ~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~-~~~--~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~ 76 (103)
T PF00085_consen 8 NFEKFINESDKPVVVYFYAPWCPPCKAFKP-ILE--KLAKEYKDNVKFAKVDCDENKELCKKY--------GVKSVPTII 76 (103)
T ss_dssp THHHHHTTTSSEEEEEEESTTSHHHHHHHH-HHH--HHHHHTTTTSEEEEEETTTSHHHHHHT--------TCSSSSEEE
T ss_pred HHHHHHHccCCCEEEEEeCCCCCccccccc-eec--ccccccccccccchhhhhccchhhhcc--------CCCCCCEEE
Confidence 3444444 4999999999999999999973 332 556666668999999999887776665 899999999
Q ss_pred EecCCCCccc
Q 004888 209 FLSPDLKPLM 218 (725)
Q Consensus 209 fl~pdG~~i~ 218 (725)
++.. |+...
T Consensus 77 ~~~~-g~~~~ 85 (103)
T PF00085_consen 77 FFKN-GKEVK 85 (103)
T ss_dssp EEET-TEEEE
T ss_pred EEEC-CcEEE
Confidence 8854 55543
No 63
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.52 E-value=2.7e-07 Score=82.08 Aligned_cols=73 Identities=22% Similarity=0.326 Sum_probs=54.7
Q ss_pred HHHH-HhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc--CcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCc
Q 004888 130 AFAE-ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (725)
Q Consensus 130 Al~~-Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~--~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~ 206 (725)
.++. .++++|+++|.|+++||.+|+.|.... .++++.++. ++..+++|.++. ++...+ ++.++|+
T Consensus 9 ~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~-~~~~~~--------~~~~~Pt 76 (104)
T cd02995 9 NFDEVVLDSDKDVLVEFYAPWCGHCKALAPIY---EELAEKLKGDDNVVIAKMDATAN-DVPSEF--------VVDGFPT 76 (104)
T ss_pred hhHHHHhCCCCcEEEEEECCCCHHHHHHhhHH---HHHHHHhcCCCCEEEEEEeCcch-hhhhhc--------cCCCCCE
Confidence 3434 456679999999999999999997543 466666654 699999999865 343332 5679999
Q ss_pred EEEecCCC
Q 004888 207 SVFLSPDL 214 (725)
Q Consensus 207 ~vfl~pdG 214 (725)
++++.+++
T Consensus 77 ~~~~~~~~ 84 (104)
T cd02995 77 ILFFPAGD 84 (104)
T ss_pred EEEEcCCC
Confidence 99996655
No 64
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.50 E-value=4.2e-07 Score=83.98 Aligned_cols=96 Identities=21% Similarity=0.311 Sum_probs=67.0
Q ss_pred HHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEE
Q 004888 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (725)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~v 208 (725)
+.+.++.+.+++|+|.|+++||++|+.|.. .++ ++++.. +..-.++||.++.|++...| ++.+.|+++
T Consensus 13 ~~~~~~l~~~~~vvv~f~a~wC~~C~~~~~-~l~--~la~~~-~~i~~~~vd~d~~~~l~~~~--------~v~~vPt~~ 80 (113)
T cd02975 13 EEFFKEMKNPVDLVVFSSKEGCQYCEVTKQ-LLE--ELSELS-DKLKLEIYDFDEDKEKAEKY--------GVERVPTTI 80 (113)
T ss_pred HHHHHHhCCCeEEEEEeCCCCCCChHHHHH-HHH--HHHHhc-CceEEEEEeCCcCHHHHHHc--------CCCcCCEEE
Confidence 445556677889999999999999999974 332 233332 35567889999888777665 888999999
Q ss_pred EecCCCC---ccccccccCCCCCCCcchHHHHHHHHHH
Q 004888 209 FLSPDLK---PLMGGTYFPPEDKYGRPGFKTILRKVKD 243 (725)
Q Consensus 209 fl~pdG~---~i~~~tY~p~~~~~~~~~F~~~L~~i~~ 243 (725)
|+..+|+ ..+. + .|+. ..|.++|+.|..
T Consensus 81 i~~~g~~~~~~~~~-G-~~~~-----~el~~~i~~i~~ 111 (113)
T cd02975 81 FLQDGGKDGGIRYY-G-LPAG-----YEFASLIEDIVR 111 (113)
T ss_pred EEeCCeecceEEEE-e-cCch-----HHHHHHHHHHHh
Confidence 9976432 2222 1 3433 478888887754
No 65
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.50 E-value=3.7e-07 Score=81.19 Aligned_cols=77 Identities=19% Similarity=0.316 Sum_probs=59.1
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc---CcEEEEEcCCCCcchHHHHHHHHHHhcCCCCc
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~---~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~ 204 (725)
.+.++.+-.++ +++|.|+++||+.|+.|.. .|+ ++++.+.. .+..++||.++.+++.+.| ++.++
T Consensus 7 ~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p-~~~--~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~ 74 (102)
T cd03005 7 EDNFDHHIAEG-NHFVKFFAPWCGHCKRLAP-TWE--QLAKKFNNENPSVKIAKVDCTQHRELCSEF--------QVRGY 74 (102)
T ss_pred HHHHHHHhhcC-CEEEEEECCCCHHHHHhCH-HHH--HHHHHHhccCCcEEEEEEECCCChhhHhhc--------CCCcC
Confidence 45566666555 5999999999999999975 454 45555544 6889999999887665554 78899
Q ss_pred CcEEEecCCCCcc
Q 004888 205 PLSVFLSPDLKPL 217 (725)
Q Consensus 205 P~~vfl~pdG~~i 217 (725)
|+++|+ ++|+++
T Consensus 75 Pt~~~~-~~g~~~ 86 (102)
T cd03005 75 PTLLLF-KDGEKV 86 (102)
T ss_pred CEEEEE-eCCCee
Confidence 999999 678765
No 66
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.47 E-value=4.2e-07 Score=80.92 Aligned_cols=73 Identities=23% Similarity=0.388 Sum_probs=56.5
Q ss_pred HhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHh--cCcEEEEEcCCC-CcchHHHHHHHHHHhcCCCCcCcEEEe
Q 004888 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREE-RPDVDKVYMTYVQALYGGGGWPLSVFL 210 (725)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln--~~FV~VkvD~ee-~pd~~~~y~~~~q~~~g~~G~P~~vfl 210 (725)
.++.+||++|.|+++||+.|+.|.. .| .++++.+. .+++.+++|.++ .+++.+.| ++.++|+++|+
T Consensus 14 ~~~~~~~~~v~f~a~~C~~C~~~~~-~~--~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~--------~i~~~P~~~~~ 82 (105)
T cd02998 14 VGDDKKDVLVEFYAPWCGHCKNLAP-EY--EKLAAVFANEDDVVIAKVDADEANKDLAKKY--------GVSGFPTLKFF 82 (105)
T ss_pred hcCCCCcEEEEEECCCCHHHHhhCh-HH--HHHHHHhCCCCCEEEEEEECCCcchhhHHhC--------CCCCcCEEEEE
Confidence 3556789999999999999999964 33 24455554 469999999988 77766554 78899999999
Q ss_pred cCCCCcc
Q 004888 211 SPDLKPL 217 (725)
Q Consensus 211 ~pdG~~i 217 (725)
.+.|+..
T Consensus 83 ~~~~~~~ 89 (105)
T cd02998 83 PKGSTEP 89 (105)
T ss_pred eCCCCCc
Confidence 8876543
No 67
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.47 E-value=3.7e-07 Score=85.56 Aligned_cols=95 Identities=17% Similarity=0.081 Sum_probs=67.0
Q ss_pred HHHHHH-hhcCCcEEEEEeccCChh--hH--hhhhhccCCHHHH-HHH-hcCcEEEEEcCCCCcchHHHHHHHHHHhcCC
Q 004888 129 EAFAEA-RKRDVPIFLSIGYSTCHW--CH--VMEVESFEDEGVA-KLL-NDWFVSIKVDREERPDVDKVYMTYVQALYGG 201 (725)
Q Consensus 129 eAl~~A-k~e~KpI~l~~g~~wC~~--C~--~Me~e~f~d~eVa-~~l-n~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~ 201 (725)
+-|++. ++..+||+++|++.||+. |+ .|+. ++. +++ ++| ......+|||+++.+++.+.| |+
T Consensus 17 ~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p-~~~--~~aa~~l~~~~v~~~kVD~d~~~~La~~~--------~I 85 (120)
T cd03065 17 KNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEE-LVL--ELAAQVLEDKGIGFGLVDSKKDAKVAKKL--------GL 85 (120)
T ss_pred hhHHHHHHhCCceEEEEECCCcCChhhChhhcchh-hHH--HHHHHHhhcCCCEEEEEeCCCCHHHHHHc--------CC
Confidence 444444 566679999999999988 99 6652 221 343 333 446999999999999998887 89
Q ss_pred CCcCcEEEecCCCCccccccccCCCCCCCcchHHHHHHHH
Q 004888 202 GGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKV 241 (725)
Q Consensus 202 ~G~P~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i 241 (725)
.|+||++++. +|+++.-.+..+++ .+.+.|+++
T Consensus 86 ~~iPTl~lfk-~G~~v~~~G~~~~~------~l~~~l~~~ 118 (120)
T cd03065 86 DEEDSIYVFK-DDEVIEYDGEFAAD------TLVEFLLDL 118 (120)
T ss_pred ccccEEEEEE-CCEEEEeeCCCCHH------HHHHHHHHH
Confidence 9999999885 89877433444433 566666544
No 68
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.46 E-value=5.2e-07 Score=84.43 Aligned_cols=72 Identities=22% Similarity=0.181 Sum_probs=48.4
Q ss_pred cCCcEEEEEec-------cCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCc---chHHHHHHHHHHhcCCC-CcC
Q 004888 137 RDVPIFLSIGY-------STCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERP---DVDKVYMTYVQALYGGG-GWP 205 (725)
Q Consensus 137 e~KpI~l~~g~-------~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~p---d~~~~y~~~~q~~~g~~-G~P 205 (725)
++|||+|.|+| +||+.|+.|+. +++ ++.+....+...++||+++.+ +....+. ..+++. +.|
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P-~l~--~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~----~~~~I~~~iP 92 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEP-VVR--EALKAAPEDCVFIYCDVGDRPYWRDPNNPFR----TDPKLTTGVP 92 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhch-hHH--HHHHHCCCCCEEEEEEcCCcccccCcchhhH----hccCcccCCC
Confidence 48999999999 99999999983 222 233334336788999998754 1111221 123676 999
Q ss_pred cEEEecCCCC
Q 004888 206 LSVFLSPDLK 215 (725)
Q Consensus 206 ~~vfl~pdG~ 215 (725)
|++++...++
T Consensus 93 T~~~~~~~~~ 102 (119)
T cd02952 93 TLLRWKTPQR 102 (119)
T ss_pred EEEEEcCCce
Confidence 9999954433
No 69
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.46 E-value=6.1e-07 Score=86.92 Aligned_cols=80 Identities=19% Similarity=0.315 Sum_probs=55.9
Q ss_pred HhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHH---Hhc--------CcEEEEEcCCCCcchHHHHH----------
Q 004888 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKL---LND--------WFVSIKVDREERPDVDKVYM---------- 192 (725)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~---ln~--------~FV~VkvD~ee~pd~~~~y~---------- 192 (725)
+.=.||+|+|+|+|+||+.|+..- |.+.++ +++ .|..|-|+.++.++..+.|.
T Consensus 21 s~~kgk~vlL~FwAsWCppCr~e~------P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~ 94 (146)
T cd03008 21 ARLENRVLLLFFGAVVSPQCQLFA------PKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFL 94 (146)
T ss_pred HHhCCCEEEEEEECCCChhHHHHH------HHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceee
Confidence 344689999999999999999875 455443 322 47888888775433222221
Q ss_pred -------HHHHHhcCCCCcCcEEEecCCCCcccc
Q 004888 193 -------TYVQALYGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 193 -------~~~q~~~g~~G~P~~vfl~pdG~~i~~ 219 (725)
..+...+++.|.|+++++|++|+++..
T Consensus 95 p~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 95 PFEDEFRRELEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred cccchHHHHHHHHcCCCCCCEEEEECCCCcEEee
Confidence 122234688899999999999999864
No 70
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=6e-07 Score=94.88 Aligned_cols=90 Identities=24% Similarity=0.334 Sum_probs=68.8
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCc
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~ 216 (725)
..+||+|+||++||+.|+.+... + ..++..-+-.|+.+|||.++.|++...| |+.++|+.+.+ .||+|
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~-L--ekla~~~~G~f~LakvN~D~~p~vAaqf--------giqsIPtV~af-~dGqp 109 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPT-L--EKLAAEYKGKFKLAKVNCDAEPMVAAQF--------GVQSIPTVYAF-KDGQP 109 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHH-H--HHHHHHhCCceEEEEecCCcchhHHHHh--------CcCcCCeEEEe-eCCcC
Confidence 35799999999999999998731 1 2344444558999999999999998876 89999998866 89999
Q ss_pred cccc-cccCCCCCCCcchHHHHHHHHHHH
Q 004888 217 LMGG-TYFPPEDKYGRPGFKTILRKVKDA 244 (725)
Q Consensus 217 i~~~-tY~p~~~~~~~~~F~~~L~~i~~~ 244 (725)
+-+. +-.|.+ ...+.|+++...
T Consensus 110 VdgF~G~qPes------qlr~~ld~~~~~ 132 (304)
T COG3118 110 VDGFQGAQPES------QLRQFLDKVLPA 132 (304)
T ss_pred ccccCCCCcHH------HHHHHHHHhcCh
Confidence 9774 233422 566777777654
No 71
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.45 E-value=7e-07 Score=83.75 Aligned_cols=79 Identities=13% Similarity=0.210 Sum_probs=49.8
Q ss_pred hhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHH---Hhc---CcEEEEEcCCCCc-chHHHH---------------H
Q 004888 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKL---LND---WFVSIKVDREERP-DVDKVY---------------M 192 (725)
Q Consensus 135 k~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~---ln~---~FV~VkvD~ee~p-d~~~~y---------------~ 192 (725)
.-.||+|+|+|+++||+.|+.+.. .+.++ +.+ ++..|-|+.++.. +..+.+ .
T Consensus 15 ~~~gk~vll~Fwa~wC~~C~~~~p------~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T cd03009 15 SLEGKTVGLYFSASWCPPCRAFTP------KLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERR 88 (131)
T ss_pred HhCCcEEEEEEECCCChHHHHHhH------HHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHH
Confidence 346899999999999999999763 44333 322 3444444443322 111110 0
Q ss_pred HHHHHhcCCCCcCcEEEecCCCCcccc
Q 004888 193 TYVQALYGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 193 ~~~q~~~g~~G~P~~vfl~pdG~~i~~ 219 (725)
..+...+++.++|++++++++|+++..
T Consensus 89 ~~~~~~~~v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 89 SRLNRTFKIEGIPTLIILDADGEVVTT 115 (131)
T ss_pred HHHHHHcCCCCCCEEEEECCCCCEEcc
Confidence 122234689999999999999998754
No 72
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.45 E-value=5.5e-07 Score=84.53 Aligned_cols=85 Identities=16% Similarity=0.171 Sum_probs=55.1
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCC--cchH--HHHHHHHHHh---c
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREER--PDVD--KVYMTYVQAL---Y 199 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~--pd~~--~~y~~~~q~~---~ 199 (725)
.+.+...-++++.++|+||++||+||+.|. |.+.++..+ +.-.++||+++. +++. +.+..+.+.. .
T Consensus 13 ~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~------P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~ 86 (122)
T TIGR01295 13 VVRALEALDKKETATFFIGRKTCPYCRKFS------GTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPT 86 (122)
T ss_pred HHHHHHHHHcCCcEEEEEECCCChhHHHHh------HHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcc
Confidence 355666667899999999999999999998 555555543 233444555432 2322 1233333322 3
Q ss_pred CCCCcCcEEEecCCCCcccc
Q 004888 200 GGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 200 g~~G~P~~vfl~pdG~~i~~ 219 (725)
++.|+|+++++ .+|+++..
T Consensus 87 ~i~~~PT~v~~-k~Gk~v~~ 105 (122)
T TIGR01295 87 SFMGTPTFVHI-TDGKQVSV 105 (122)
T ss_pred cCCCCCEEEEE-eCCeEEEE
Confidence 57789999977 77887754
No 73
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.43 E-value=1.7e-06 Score=89.61 Aligned_cols=69 Identities=20% Similarity=0.310 Sum_probs=57.3
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCc
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~ 216 (725)
.++|++|.|+++||+.|+.|... | .++++.+...+...+||.++.+++.+.| ++.|+|++++++ +|++
T Consensus 51 ~~~~vlV~FyApWC~~Ck~~~P~-~--e~la~~~~~~v~~~~VD~~~~~~l~~~~--------~I~~~PTl~~f~-~G~~ 118 (224)
T PTZ00443 51 TTGPWFVKFYAPWCSHCRKMAPA-W--ERLAKALKGQVNVADLDATRALNLAKRF--------AIKGYPTLLLFD-KGKM 118 (224)
T ss_pred CCCCEEEEEECCCChHHHHHHHH-H--HHHHHHcCCCeEEEEecCcccHHHHHHc--------CCCcCCEEEEEE-CCEE
Confidence 47999999999999999999864 4 4677777766777899999888776665 889999999997 7876
Q ss_pred c
Q 004888 217 L 217 (725)
Q Consensus 217 i 217 (725)
+
T Consensus 119 v 119 (224)
T PTZ00443 119 Y 119 (224)
T ss_pred E
Confidence 5
No 74
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.42 E-value=8.5e-07 Score=78.99 Aligned_cols=75 Identities=19% Similarity=0.298 Sum_probs=57.6
Q ss_pred HHHHHHH-hhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCc
Q 004888 128 EEAFAEA-RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (725)
Q Consensus 128 ~eAl~~A-k~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~ 206 (725)
++.++.. .+.++|++|.|+++||+.|+.|... | .++++.+...+..+++|.++.+++.+.| ++.++|+
T Consensus 7 ~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~id~~~~~~~~~~~--------~i~~~P~ 75 (103)
T cd03001 7 DSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPE-W--KKAAKALKGIVKVGAVDADVHQSLAQQY--------GVRGFPT 75 (103)
T ss_pred HHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHH-H--HHHHHHhcCCceEEEEECcchHHHHHHC--------CCCccCE
Confidence 4555554 4567789999999999999999743 4 3456666667888999999887765544 8889999
Q ss_pred EEEecCC
Q 004888 207 SVFLSPD 213 (725)
Q Consensus 207 ~vfl~pd 213 (725)
++++.++
T Consensus 76 ~~~~~~~ 82 (103)
T cd03001 76 IKVFGAG 82 (103)
T ss_pred EEEECCC
Confidence 9999765
No 75
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.42 E-value=6e-07 Score=80.26 Aligned_cols=75 Identities=15% Similarity=0.145 Sum_probs=55.1
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCc
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~ 206 (725)
++.+++.. +++ ++|.|+++||+.|+.|.. +|+ ++++.++. .+...+||.++.+++.+.| ++.++|+
T Consensus 8 ~~~f~~~~-~~~-~lv~f~a~wC~~C~~~~p-~~~--~l~~~~~~~~v~~~~vd~~~~~~~~~~~--------~i~~~Pt 74 (101)
T cd02994 8 DSNWTLVL-EGE-WMIEFYAPWCPACQQLQP-EWE--EFADWSDDLGINVAKVDVTQEPGLSGRF--------FVTALPT 74 (101)
T ss_pred hhhHHHHh-CCC-EEEEEECCCCHHHHHHhH-HHH--HHHHhhccCCeEEEEEEccCCHhHHHHc--------CCcccCE
Confidence 34444444 344 789999999999999985 354 44444433 5888999999888776655 7899999
Q ss_pred EEEecCCCCc
Q 004888 207 SVFLSPDLKP 216 (725)
Q Consensus 207 ~vfl~pdG~~ 216 (725)
++|+ ++|++
T Consensus 75 ~~~~-~~g~~ 83 (101)
T cd02994 75 IYHA-KDGVF 83 (101)
T ss_pred EEEe-CCCCE
Confidence 9987 78874
No 76
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=98.37 E-value=3.5e-05 Score=82.84 Aligned_cols=132 Identities=19% Similarity=0.095 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 004888 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 626 (725)
Q Consensus 547 al~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~leDyA~li 626 (725)
+-++++|++++++++| ++|++.|+++.+++.+++++.++| .+.+ +++.....++..+.+=.+
T Consensus 142 aGi~~~L~~l~~~t~d----------------~~~l~~A~~~~~~~~~~~~~~~~g-~~~~-~~~~~~~~~wchG~aGi~ 203 (321)
T cd04791 142 AGIALFLLRLYKATGD----------------SRYLELAEEALDKELARAVVDDGG-LLQV-DEGARLLPYLCSGSAGLG 203 (321)
T ss_pred HHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHhhccCCCC-ceEc-CCCCccCcccCCCcHHHH
Confidence 6678889999999998 789999999999999988765444 3332 233334456777888899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHhhCC
Q 004888 627 SGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 706 (725)
Q Consensus 627 ~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~t~~ 706 (725)
.+++.++++++|++|++.|+++.+.+...++.. + ..-.|.+=.+..|+.++..+++
T Consensus 204 ~~l~~l~~~~~d~~~~~~a~~~~~~~~~~~~~~------------~------------~lchG~~G~~~~l~~~~~~~~~ 259 (321)
T cd04791 204 LLMLRLEAITGDKRWRDEADGIAHAALSSCYAN------------P------------GLFSGTAGLGAHLNDLAAEGDN 259 (321)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhhhccC------------c------------cccCCcHhHHHHHHhhcccccC
Confidence 999999999999999999999998887654210 0 0112333345666777888886
Q ss_pred CCchHHHHHHHHHHHHh
Q 004888 707 SKSDYYRQNAEHSLYLR 723 (725)
Q Consensus 707 ~~~~~y~~~A~~~l~~~ 723 (725)
+.|++.|.++...+
T Consensus 260 ---~~~~~~~~~~~~~~ 273 (321)
T cd04791 260 ---ALYKAAAERLALYL 273 (321)
T ss_pred ---hHHHHHHHHHHHHh
Confidence 68999888876543
No 77
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.31 E-value=1.4e-06 Score=80.62 Aligned_cols=77 Identities=18% Similarity=0.286 Sum_probs=53.8
Q ss_pred HHHHHHH-hhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc---CcEEEEEcCCC--CcchHHHHHHHHHHhcCC
Q 004888 128 EEAFAEA-RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREE--RPDVDKVYMTYVQALYGG 201 (725)
Q Consensus 128 ~eAl~~A-k~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~---~FV~VkvD~ee--~pd~~~~y~~~~q~~~g~ 201 (725)
++.+++. +..+|||||.|+++||+.|+.|.. +|+ ++++.+.+ .+...+||.+. .+++.+.| ++
T Consensus 8 ~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~-~~~--~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~--------~i 76 (114)
T cd02992 8 AASFNSALLGSPSAWLVEFYASWCGHCRAFAP-TWK--KLARDLRKWRPVVRVAAVDCADEENVALCRDF--------GV 76 (114)
T ss_pred HHhHHHHHhcCCCeEEEEEECCCCHHHHHHhH-HHH--HHHHHHHhcCCceEEEEEeccchhhHHHHHhC--------CC
Confidence 3444444 455689999999999999999975 454 46666643 25667888643 34443333 88
Q ss_pred CCcCcEEEecCCCC
Q 004888 202 GGWPLSVFLSPDLK 215 (725)
Q Consensus 202 ~G~P~~vfl~pdG~ 215 (725)
.++|+++|+.+..+
T Consensus 77 ~~~Pt~~lf~~~~~ 90 (114)
T cd02992 77 TGYPTLRYFPPFSK 90 (114)
T ss_pred CCCCEEEEECCCCc
Confidence 89999999976653
No 78
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.30 E-value=1.3e-06 Score=81.38 Aligned_cols=88 Identities=15% Similarity=0.139 Sum_probs=56.7
Q ss_pred HHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcC-cEEEEEcCCCCcchHHHHHHH---------------
Q 004888 131 FAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTY--------------- 194 (725)
Q Consensus 131 l~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~-FV~VkvD~ee~pd~~~~y~~~--------------- 194 (725)
+..+.-.|||++|.|+++||+.|+.+. |.+.++-++. +..|-|+.++.++-.+.|.+.
T Consensus 18 ~~~~~~~gk~vvv~F~a~~C~~C~~~~------~~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 91 (127)
T cd03010 18 LTSADLKGKPYLLNVWASWCAPCREEH------PVLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGR 91 (127)
T ss_pred ccHHHcCCCEEEEEEEcCcCHHHHHHH------HHHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcch
Confidence 333444599999999999999999986 4555544443 666666654332222222110
Q ss_pred HHHhcCCCCcCcEEEecCCCCcccc-ccccC
Q 004888 195 VQALYGGGGWPLSVFLSPDLKPLMG-GTYFP 224 (725)
Q Consensus 195 ~q~~~g~~G~P~~vfl~pdG~~i~~-~tY~p 224 (725)
+...+++.++|+++|++++|+++.. .+.++
T Consensus 92 ~~~~~~v~~~P~~~~ld~~G~v~~~~~G~~~ 122 (127)
T cd03010 92 VGIDLGVYGVPETFLIDGDGIIRYKHVGPLT 122 (127)
T ss_pred HHHhcCCCCCCeEEEECCCceEEEEEeccCC
Confidence 1122588899999999999998865 24444
No 79
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.29 E-value=1.1e-06 Score=100.82 Aligned_cols=94 Identities=13% Similarity=0.074 Sum_probs=55.9
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHh----cCcEEEEEcC-----CCCcchHHHHHH--------------
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN----DWFVSIKVDR-----EERPDVDKVYMT-------------- 193 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln----~~FV~VkvD~-----ee~pd~~~~y~~-------------- 193 (725)
+||||+|+|+|+||++|+.+. |++.++.+ +.+..|-|.. ++.....+.+.+
T Consensus 55 kGKpVvV~FWATWCppCk~em------P~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~ 128 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSEL------GETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNG 128 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHH------HHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceecccc
Confidence 689999999999999999986 34443332 2333333322 111110011110
Q ss_pred -HHHHhcCCCCcCcEEEecCCCCcccc-ccccCCCCCCCcchHHHHHHHHH
Q 004888 194 -YVQALYGGGGWPLSVFLSPDLKPLMG-GTYFPPEDKYGRPGFKTILRKVK 242 (725)
Q Consensus 194 -~~q~~~g~~G~P~~vfl~pdG~~i~~-~tY~p~~~~~~~~~F~~~L~~i~ 242 (725)
.+...+++.++|+++|++++|+++.. .++.+.+ .+.++|+...
T Consensus 129 ~~lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~e------eL~a~Ie~~~ 173 (521)
T PRK14018 129 GTLAQSLNISVYPSWAIIGKDGDVQRIVKGSISEA------QALALIRNPN 173 (521)
T ss_pred HHHHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHH------HHHHHHHHhh
Confidence 11223588999999999999999865 3555543 4555555433
No 80
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=98.28 E-value=0.00011 Score=85.17 Aligned_cols=240 Identities=18% Similarity=0.204 Sum_probs=141.6
Q ss_pred cHHHHHHHHHHHHHHHhCCCcccCCCeEEE-Eec------CCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHH
Q 004888 334 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHR-YSV------DERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICR 406 (725)
Q Consensus 334 ~~~~~~~~~~TL~~ma~gGi~D~v~GGF~R-Ys~------D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~ 406 (725)
+++.++.+...++.++. -. ...||.. |.. +..|.. ---.+|...-|+.+..++|+.+|++..+++|.
T Consensus 78 D~~l~~~~d~~V~~l~~--~Q--~~dGYl~~~~~~~~~~~~~~w~~--~~he~Y~~~~ll~gl~~~y~~tG~~~~L~v~~ 151 (520)
T PF07944_consen 78 DPELKAKADEIVDELAA--AQ--QPDGYLGTYPEERNFNPDDRWAP--DMHELYCLGKLLEGLIDYYEATGNERALDVAT 151 (520)
T ss_pred CHHHHHHHHHHHHHHHH--hc--cCCceecccccccccccccCCCC--CccceehHhHHHHHHHHHHHHHCcHHHHHHHH
Confidence 46777777777777765 22 2455554 222 234543 12348999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCceeeeccCCCccccccccccCcceEEechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCC
Q 004888 407 DILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHN 486 (725)
Q Consensus 407 ~~~~fl~~~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~lg~~~~l~~~~y~l~~~Gn~e~~~~~dp~~ 486 (725)
+.++|+.+.+.. | +.+
T Consensus 152 k~ad~~~~~~~~----~----~~~-------------------------------------------------------- 167 (520)
T PF07944_consen 152 KLADWVYRRLSR----L----GPE-------------------------------------------------------- 167 (520)
T ss_pred HHHHHHHHHhcc----C----CHH--------------------------------------------------------
Confidence 999999543211 0 000
Q ss_pred CCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCCCCCCcchhhhcHHHHHHHHHHHHHHhhhhhhh
Q 004888 487 EFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAES 566 (725)
Q Consensus 487 ~f~g~nvL~~~~~~~~~a~~~g~~~e~~~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal~I~aLa~A~~vl~d~~~~ 566 (725)
.++.+ ..+.+ +-|..+|+++|+++||
T Consensus 168 --~~~~~-----------------------------------------------~~~~~-~~i~~~l~~LY~~Tgd---- 193 (520)
T PF07944_consen 168 --PGQKM-----------------------------------------------GYPEH-GGINEALVRLYEITGD---- 193 (520)
T ss_pred --Hhhcc-----------------------------------------------ccccc-chHHHHHHHHHHHhCC----
Confidence 00000 00011 3445789999999998
Q ss_pred hcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCC-----CCCCcchHHHHHHHHHHHHHHcCCHHH
Q 004888 567 AMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK-----APGFLDDYAFLISGLLDLYEFGSGTKW 641 (725)
Q Consensus 567 ~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~-----~~~~leDyA~li~aLL~LYe~Tgd~~y 641 (725)
++||+.|+...+ ...+++. +..+. .+..+. ..+..=-.+++..|..++|++|||++|
T Consensus 194 ------------~~yL~lA~~f~~---~~~~~~~-~~~~~--~d~~~~~~a~~~~~h~vr~~y~~~g~a~~y~~tgd~~~ 255 (520)
T PF07944_consen 194 ------------ERYLDLAEYFVD---QRGFDPY-DLAYG--QDHLPGRHANTHIGHAVRAMYLYSGAADLYEETGDEEY 255 (520)
T ss_pred ------------HHHHHHHHHHHH---HhCCCCC-chhhc--CccCCCccccceeeEEEEhhhhhhHHHHHHHHhCCHHH
Confidence 789999976653 3444430 00100 011110 112222236788999999999999999
Q ss_pred HHHHHHHHHHHHHH-ccccCCCcccccC-CCCCccccccccCCCCCCCChHHHHHHHHHHHHHhhCCCCchHHHHHHHHH
Q 004888 642 LVWAIELQNTQDEL-FLDREGGGYFNTT-GEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHS 719 (725)
Q Consensus 642 L~~A~~L~~~~~~~-F~D~~~Ggyf~t~-~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~t~~~~~~~y~~~A~~~ 719 (725)
++.++.+++.+.++ .+= +||.-... .|.-...-.........+-.+..-+..-..+|..++|+ ..|.+..|++
T Consensus 256 ~~a~~~~w~~v~~~~~y~--tGg~g~~~~~E~f~~~~~lp~~~~~~EtCas~~~~~~~~~L~~~tgd---~~yaD~~Er~ 330 (520)
T PF07944_consen 256 LDAAENFWDNVVRHHMYA--TGGIGSDHEGEHFGPPYDLPNRLAYAETCASVNMMKLARRLFRLTGD---ARYADYYERA 330 (520)
T ss_pred HHHHHHHHHHHHhcCeec--cCCCcCCCCCccCCCCCCCCcCCCCccccHHHHHHHHHHHHHhcCCC---chHHHHHHHH
Confidence 99999999988764 331 23332220 01100000000011113333333455556677788887 6899999987
Q ss_pred H
Q 004888 720 L 720 (725)
Q Consensus 720 l 720 (725)
+
T Consensus 331 l 331 (520)
T PF07944_consen 331 L 331 (520)
T ss_pred H
Confidence 6
No 81
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.27 E-value=2.2e-06 Score=78.86 Aligned_cols=68 Identities=9% Similarity=0.053 Sum_probs=50.9
Q ss_pred CCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCcc
Q 004888 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (725)
Q Consensus 138 ~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i 217 (725)
++||+|.|+++||+.|+.|.. +++ ++++... +...++||.++. ++.+.| ++.++|+++++ .+|+++
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~-~l~--~la~~~~-~v~f~~vd~~~~-~l~~~~--------~i~~~Pt~~~f-~~G~~v 89 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDS-HLE--ELAAKYP-ETKFVKINAEKA-FLVNYL--------DIKVLPTLLVY-KNGELI 89 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHH-HHH--HHHHHCC-CcEEEEEEchhh-HHHHhc--------CCCcCCEEEEE-ECCEEE
Confidence 499999999999999999974 332 3444432 456789999876 665544 88899998888 578887
Q ss_pred cc
Q 004888 218 MG 219 (725)
Q Consensus 218 ~~ 219 (725)
..
T Consensus 90 ~~ 91 (113)
T cd02957 90 DN 91 (113)
T ss_pred EE
Confidence 54
No 82
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.27 E-value=2.9e-06 Score=79.99 Aligned_cols=82 Identities=18% Similarity=0.246 Sum_probs=53.5
Q ss_pred HHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHH---HHhc---CcEEEEEcCCCCcchHHHHH-------------
Q 004888 132 AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAK---LLND---WFVSIKVDREERPDVDKVYM------------- 192 (725)
Q Consensus 132 ~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~---~ln~---~FV~VkvD~ee~pd~~~~y~------------- 192 (725)
..+.-.||+|+|+|+++||+.|+.+. |++.+ .+.+ .+..|-|+.++.++-.+.|+
T Consensus 11 ~l~~~~Gk~vll~F~atwC~~C~~~~------p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d 84 (132)
T cd02964 11 PVSALEGKTVGLYFSASWCPPCRAFT------PKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFED 84 (132)
T ss_pred cHHHhCCCEEEEEEECCCCchHHHHH------HHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCc
Confidence 34444689999999999999999875 34433 3333 35555565554432111111
Q ss_pred ----HHHHHhcCCCCcCcEEEecCCCCcccc
Q 004888 193 ----TYVQALYGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 193 ----~~~q~~~g~~G~P~~vfl~pdG~~i~~ 219 (725)
..+...+++.|+|+++|++++|+++..
T Consensus 85 ~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~ 115 (132)
T cd02964 85 EELRELLEKQFKVEGIPTLVVLKPDGDVVTT 115 (132)
T ss_pred HHHHHHHHHHcCCCCCCEEEEECCCCCEEch
Confidence 122233688999999999999998854
No 83
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.25 E-value=2.6e-06 Score=75.16 Aligned_cols=76 Identities=25% Similarity=0.234 Sum_probs=47.0
Q ss_pred CCcEEEEEeccCChhhHhhhhhccCCHHHHHHHh--cCcEEEEEcCCCCcchHHHH-----------------HHHHHHh
Q 004888 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVY-----------------MTYVQAL 198 (725)
Q Consensus 138 ~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln--~~FV~VkvD~ee~pd~~~~y-----------------~~~~q~~ 198 (725)
||+++|+|+++||..|+..-... .++.+.++ +.+..|-|..++..+--+.+ ...+...
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l---~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 77 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKL---KELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKK 77 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHH---HHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHH
Confidence 79999999999999999865322 23455555 45555555544321111111 1223344
Q ss_pred cCCCCcCcEEEecCCCCc
Q 004888 199 YGGGGWPLSVFLSPDLKP 216 (725)
Q Consensus 199 ~g~~G~P~~vfl~pdG~~ 216 (725)
+++.++|++++++++|++
T Consensus 78 ~~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 78 YGINGIPTLVLLDPDGKI 95 (95)
T ss_dssp TT-TSSSEEEEEETTSBE
T ss_pred CCCCcCCEEEEECCCCCC
Confidence 688999999999999974
No 84
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.22 E-value=2e-06 Score=79.44 Aligned_cols=87 Identities=13% Similarity=0.088 Sum_probs=65.5
Q ss_pred CccccchHHHHHHHhhcCCcEEEEEeccC--ChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHh
Q 004888 121 VDWFAWGEEAFAEARKRDVPIFLSIGYST--CHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQAL 198 (725)
Q Consensus 121 V~W~~~~~eAl~~Ak~e~KpI~l~~g~~w--C~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~ 198 (725)
.+|-.-.+.-|+.--+.|.+++|+|+++| |+.|+.|+. .| +++++.+......++||.++.|++...|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P-~l--eela~e~~~~v~f~kVdid~~~~la~~f------- 79 (111)
T cd02965 10 HGWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAV-VL--PELLKAFPGRFRAAVVGRADEQALAARF------- 79 (111)
T ss_pred cCCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHh-HH--HHHHHHCCCcEEEEEEECCCCHHHHHHc-------
Confidence 34544445555555588899999999997 999999983 22 2455555445668899999999888777
Q ss_pred cCCCCcCcEEEecCCCCcccc
Q 004888 199 YGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 199 ~g~~G~P~~vfl~pdG~~i~~ 219 (725)
++.|+||++|+ .+|+++..
T Consensus 80 -~V~sIPTli~f-kdGk~v~~ 98 (111)
T cd02965 80 -GVLRTPALLFF-RDGRYVGV 98 (111)
T ss_pred -CCCcCCEEEEE-ECCEEEEE
Confidence 89999999988 47888754
No 85
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=98.21 E-value=0.00017 Score=77.74 Aligned_cols=267 Identities=18% Similarity=0.140 Sum_probs=163.7
Q ss_pred HHHHhhccccCCCCCCCCCCCChhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHH-HHHhCCCcccCCCeEEEEecCC
Q 004888 290 EQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQ-CMAKGGIHDHVGGGFHRYSVDE 368 (725)
Q Consensus 290 ~~l~~~~D~~~GGfg~apKFP~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~-~ma~gGi~D~v~GGF~RYs~D~ 368 (725)
.++.++++...|=....=-+|+-+.|.=+.+.+.-++ +++.++.+....+ .|.. |||=+|.+|.
T Consensus 17 ~~~~~~~~~r~~~~~~~Wdwe~GV~lyGv~~~~eAT~-------d~~yl~~l~~~~d~~i~~--------~g~~~~~id~ 81 (357)
T COG4225 17 ATMIDRIIARTGPTKDRWDWEQGVFLYGVARAYEATG-------DAEYLDYLKTWFDEQIDE--------GGLPPRNIDH 81 (357)
T ss_pred HHHHHHHHHhhCCCCccccccccchHHHHHHHHHHcC-------cHHHHHHHHHHHHhhhcc--------CCCCccchhh
Confidence 3344444444443333344667677776667666543 3566665544433 3333 3455555442
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCccccccccccCcceEEe
Q 004888 369 RWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVW 448 (725)
Q Consensus 369 ~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~w 448 (725)
- +.-.++.--|..|+||.|+..|.+..+|+..+++-.+|||.+-. ++|
T Consensus 82 i--------------~~g~~L~~L~e~T~~~~Yl~~a~~~a~~l~~~~Rt~eG~f~H~~------------~~p------ 129 (357)
T COG4225 82 I--------------AAGLTLLPLYEQTGDPRYLEAAIKLASWLVHEPRTKEGGFQHKV------------KYP------ 129 (357)
T ss_pred h--------------ccCceeeehhhhhCCHHHHHHHHHHHHHHhhCcccCCCcccccc------------Cch------
Confidence 1 22233455788999999999999999999999977789886510 000
Q ss_pred chHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhh
Q 004888 449 TSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDV 528 (725)
Q Consensus 449 t~~Ei~~~lg~~~~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~e~~~~~l~~~r~kL~~~ 528 (725)
. .+
T Consensus 130 -----------------------------------------~-----------------Q~------------------- 132 (357)
T COG4225 130 -----------------------------------------H-----------------QM------------------- 132 (357)
T ss_pred -----------------------------------------h-----------------Hh-------------------
Confidence 0 00
Q ss_pred hccCCCCCCCcchhhhcHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe
Q 004888 529 RSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF 608 (725)
Q Consensus 529 R~~R~~P~lDdKiitsWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~ 608 (725)
-+|.- -|...-+++.++++++ ++|++.|..-..-..+++.||++|.+||.|
T Consensus 133 -------W~DtL------~Ma~~F~ak~g~~~~~----------------~e~~d~~~~QF~~~~~~l~Dp~TGL~YH~w 183 (357)
T COG4225 133 -------WLDTL------YMAGLFLAKYGQVTGR----------------PEYFDEALYQFSLHEKYLRDPETGLYYHGW 183 (357)
T ss_pred -------hhcch------hhhhHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHHHccCCCcCceEEee
Confidence 11221 2335568889999987 889999998888889999999999999997
Q ss_pred cC-CCCCC-------CCCcc-hHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHccccCCCcccccCCCCCcc
Q 004888 609 RN-GPSKA-------PGFLD-DYAFLISGLLDLYEFGSGTK-----WLVWAIELQNTQDELFLDREGGGYFNTTGEDPSV 674 (725)
Q Consensus 609 ~~-g~~~~-------~~~le-DyA~li~aLL~LYe~Tgd~~-----yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~ 674 (725)
.. |+-.+ +.++. ..++++.++.++.+.-.++. +.+.-..+.+.+.. .-| ++|-|+-.-++ +
T Consensus 184 d~~~~~~w~~~~sG~~~fWaRg~gW~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~r-~Qd-e~GlW~tiLDd-~-- 258 (357)
T COG4225 184 DEDGTMPWANNESGEPAFWARGNGWYAMALADLLELLPEDHPDRRELLNVLRDLVDALIR-YQD-ESGLWHTILDD-G-- 258 (357)
T ss_pred ccCCCCccccccCCCceeeecccchHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHH-hhc-cccchhhhhcc-C--
Confidence 53 31111 12222 45778888888888765432 33444444444433 335 56766653322 1
Q ss_pred ccccccCCCCCCCChHHHHHHHHHH---HHHhhCCCCchHHHHHHHHHHHHhh
Q 004888 675 LLRVKEDHDGAEPSGNSVSVINLVR---LASIVAGSKSDYYRQNAEHSLYLRQ 724 (725)
Q Consensus 675 ~~r~k~~~D~a~PS~Nsv~a~~Llr---L~~~t~~~~~~~y~~~A~~~l~~~~ 724 (725)
| .....+.|+.+..|-+|++ ++-+. ++|...|++.++++.
T Consensus 259 --~---~~sy~EsSaSa~faYallkgi~~G~l~-----~~~~~~~~kA~~aLl 301 (357)
T COG4225 259 --R---PGSYLESSASAGFAYALLKGINLGILD-----PEYAPVAEKALDALL 301 (357)
T ss_pred --C---CCCchhhhHHHHHHHHHHHHHhcCCCC-----chhhHHHHHHHHHHH
Confidence 1 1223567899999999888 65543 457788888777653
No 86
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.20 E-value=2.3e-06 Score=77.81 Aligned_cols=79 Identities=15% Similarity=0.238 Sum_probs=49.7
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHH-------------HHHHHhcCCCC
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYM-------------TYVQALYGGGG 203 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~-------------~~~q~~~g~~G 203 (725)
++||++|.|+++||+.|+.+... ++ ++.+.....+..|.+- +..++-.+.+. ......+++.+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~-l~--~~~~~~~~~~~vi~v~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 95 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPV-IR--SIARAEADWLDVVLAS-DGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSK 95 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHH-HH--HHHHHhcCCcEEEEEe-CCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCC
Confidence 58999999999999999997633 32 2444343445445441 22222111121 11223457889
Q ss_pred cCcEEEecCCCCcccc
Q 004888 204 WPLSVFLSPDLKPLMG 219 (725)
Q Consensus 204 ~P~~vfl~pdG~~i~~ 219 (725)
+|+++++|++|++++.
T Consensus 96 ~P~~~vid~~G~v~~~ 111 (114)
T cd02967 96 LPYAVLLDEAGVIAAK 111 (114)
T ss_pred cCeEEEECCCCeEEec
Confidence 9999999999998765
No 87
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.19 E-value=2.5e-06 Score=75.65 Aligned_cols=87 Identities=17% Similarity=0.265 Sum_probs=54.7
Q ss_pred HHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHh-cCcEEEEEcCCCC-cchHHHHHHH-------------
Q 004888 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREER-PDVDKVYMTY------------- 194 (725)
Q Consensus 130 Al~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln-~~FV~VkvD~ee~-pd~~~~y~~~------------- 194 (725)
.+..++..+|+++|.|++.||+.|+.+.. .+. ++.+.+. .++..+.|+.+.. ++..+.+.+-
T Consensus 11 ~~~~~~~~~k~~ll~f~~~~C~~C~~~~~-~l~--~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (116)
T cd02966 11 PVSLSDLKGKVVLVNFWASWCPPCRAEMP-ELE--ALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDG 87 (116)
T ss_pred EeehHHcCCCEEEEEeecccChhHHHHhH-HHH--HHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcc
Confidence 34445555999999999999999998642 222 2223332 2456666666653 3332222111
Q ss_pred -HHHhcCCCCcCcEEEecCCCCcccc
Q 004888 195 -VQALYGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 195 -~q~~~g~~G~P~~vfl~pdG~~i~~ 219 (725)
....+++.++|.++++||+|+.+..
T Consensus 88 ~~~~~~~~~~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 88 ELAKAYGVRGLPTTFLIDRDGRIRAR 113 (116)
T ss_pred hHHHhcCcCccceEEEECCCCcEEEE
Confidence 1223477899999999999988753
No 88
>PTZ00102 disulphide isomerase; Provisional
Probab=98.17 E-value=2.2e-06 Score=97.32 Aligned_cols=77 Identities=17% Similarity=0.314 Sum_probs=58.1
Q ss_pred HHHHHH-hhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHh--cCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcC
Q 004888 129 EAFAEA-RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (725)
Q Consensus 129 eAl~~A-k~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln--~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P 205 (725)
+.+++. .+++|+|||.|+++||++|+.|+. +|+ ++++.+. .+++.+++|.+.++.+.+.| ++.|+|
T Consensus 365 ~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p-~~~--~~a~~~~~~~~v~~~~id~~~~~~~~~~~--------~v~~~P 433 (477)
T PTZ00102 365 NTFEEIVFKSDKDVLLEIYAPWCGHCKNLEP-VYN--ELGEKYKDNDSIIVAKMNGTANETPLEEF--------SWSAFP 433 (477)
T ss_pred cchHHHHhcCCCCEEEEEECCCCHHHHHHHH-HHH--HHHHHhccCCcEEEEEEECCCCccchhcC--------CCcccC
Confidence 444444 788999999999999999999975 454 3444443 36889999998776554444 778999
Q ss_pred cEEEecCCCCc
Q 004888 206 LSVFLSPDLKP 216 (725)
Q Consensus 206 ~~vfl~pdG~~ 216 (725)
+++|+.++++.
T Consensus 434 t~~~~~~~~~~ 444 (477)
T PTZ00102 434 TILFVKAGERT 444 (477)
T ss_pred eEEEEECCCcc
Confidence 99999887763
No 89
>PHA02125 thioredoxin-like protein
Probab=98.15 E-value=5e-06 Score=71.09 Aligned_cols=57 Identities=18% Similarity=0.256 Sum_probs=43.7
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCcccc
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~~ 219 (725)
++.|+++||++|+.|+.. + .+ + .|..++||.++.+++.+.| ++.++||++ +|+.+..
T Consensus 2 iv~f~a~wC~~Ck~~~~~-l-----~~-~--~~~~~~vd~~~~~~l~~~~--------~v~~~PT~~----~g~~~~~ 58 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPM-L-----AN-V--EYTYVDVDTDEGVELTAKH--------HIRSLPTLV----NTSTLDR 58 (75)
T ss_pred EEEEECCCCHhHHHHHHH-H-----HH-H--hheEEeeeCCCCHHHHHHc--------CCceeCeEE----CCEEEEE
Confidence 688999999999999753 3 22 2 3678899998888777665 888999987 5666543
No 90
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.14 E-value=1.9e-06 Score=79.54 Aligned_cols=88 Identities=18% Similarity=0.241 Sum_probs=52.0
Q ss_pred HHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCcchHHHHH--------------HH
Q 004888 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYM--------------TY 194 (725)
Q Consensus 130 Al~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~pd~~~~y~--------------~~ 194 (725)
.+..+...+|+++|.|+++||+.|+.+. |.+.++.++ .++.|.+|.+....+.+ +. ..
T Consensus 12 ~~~~~~~~~k~~vl~F~~~~C~~C~~~~------~~l~~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~ 84 (123)
T cd03011 12 QFDLESLSGKPVLVYFWATWCPVCRFTS------PTVNQLAADYPVVSVALRSGDDGAVAR-FMQKKGYGFPVINDPDGV 84 (123)
T ss_pred EeeHHHhCCCEEEEEEECCcChhhhhhC------hHHHHHHhhCCEEEEEccCCCHHHHHH-HHHHcCCCccEEECCCcH
Confidence 3444555679999999999999999985 333333332 34444444331111111 10 00
Q ss_pred HHHhcCCCCcCcEEEecCCCCcccc-ccccCC
Q 004888 195 VQALYGGGGWPLSVFLSPDLKPLMG-GTYFPP 225 (725)
Q Consensus 195 ~q~~~g~~G~P~~vfl~pdG~~i~~-~tY~p~ 225 (725)
+...+++.++|+++|++++| +... .++.++
T Consensus 85 ~~~~~~i~~~P~~~vid~~g-i~~~~~g~~~~ 115 (123)
T cd03011 85 ISARWGVSVTPAIVIVDPGG-IVFVTTGVTSE 115 (123)
T ss_pred HHHhCCCCcccEEEEEcCCC-eEEEEeccCCH
Confidence 11124889999999999998 5543 345554
No 91
>PTZ00102 disulphide isomerase; Provisional
Probab=98.14 E-value=3.9e-06 Score=95.32 Aligned_cols=77 Identities=19% Similarity=0.313 Sum_probs=61.0
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHh---cCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCc
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN---DWFVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln---~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~ 204 (725)
++.+..+.++++++||.|+++||+.|+.|..+.. ++++.++ .+++.++||.++.+++.+.| ++.|+
T Consensus 39 ~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~---~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~--------~i~~~ 107 (477)
T PTZ00102 39 DSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYK---KAAKMLKEKKSEIVLASVDATEEMELAQEF--------GVRGY 107 (477)
T ss_pred hhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHH---HHHHHHHhcCCcEEEEEEECCCCHHHHHhc--------CCCcc
Confidence 5667777788999999999999999999986532 3444444 35899999999888776665 88999
Q ss_pred CcEEEecCCCC
Q 004888 205 PLSVFLSPDLK 215 (725)
Q Consensus 205 P~~vfl~pdG~ 215 (725)
|+++++..++.
T Consensus 108 Pt~~~~~~g~~ 118 (477)
T PTZ00102 108 PTIKFFNKGNP 118 (477)
T ss_pred cEEEEEECCce
Confidence 99999986543
No 92
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.13 E-value=4.5e-06 Score=93.80 Aligned_cols=77 Identities=22% Similarity=0.318 Sum_probs=60.3
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc---CcEEEEEcCCCCcchHHHHHHHHHHhcCCCCc
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~---~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~ 204 (725)
++.+..+.+++|++||.|+++||+.|+.|.... .++++.++. ++..++||.++.+++.+.| ++.++
T Consensus 8 ~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~i~~~ 76 (462)
T TIGR01130 8 KDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEY---EKAADELKKKGPPIKLAKVDATEEKDLAQKY--------GVSGY 76 (462)
T ss_pred HHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHH---HHHHHHHhhcCCceEEEEEECCCcHHHHHhC--------CCccc
Confidence 566777778899999999999999999998643 345555543 3889999999887776555 88999
Q ss_pred CcEEEecCCCCc
Q 004888 205 PLSVFLSPDLKP 216 (725)
Q Consensus 205 P~~vfl~pdG~~ 216 (725)
|+++++. +|+.
T Consensus 77 Pt~~~~~-~g~~ 87 (462)
T TIGR01130 77 PTLKIFR-NGED 87 (462)
T ss_pred cEEEEEe-CCcc
Confidence 9998885 4554
No 93
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.12 E-value=5.6e-06 Score=80.86 Aligned_cols=79 Identities=10% Similarity=0.147 Sum_probs=47.8
Q ss_pred HhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCc--chHHHH---HHHHHHhc---CCCCc
Q 004888 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERP--DVDKVY---MTYVQALY---GGGGW 204 (725)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~p--d~~~~y---~~~~q~~~---g~~G~ 204 (725)
....+++.+|+|+++||++|+.+. |.+.++-++ +|..+-|+.++.+ .....+ .......+ ++.+.
T Consensus 46 ~~~l~~~~lvnFWAsWCppCr~e~------P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~i 119 (153)
T TIGR02738 46 HANQDDYALVFFYQSTCPYCHQFA------PVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVT 119 (153)
T ss_pred hhhcCCCEEEEEECCCChhHHHHH------HHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCC
Confidence 334567779999999999999985 566555443 3444444443321 110000 11112223 56799
Q ss_pred CcEEEecCCCCccc
Q 004888 205 PLSVFLSPDLKPLM 218 (725)
Q Consensus 205 P~~vfl~pdG~~i~ 218 (725)
|+++++|++|+.+.
T Consensus 120 PTt~LID~~G~~i~ 133 (153)
T TIGR02738 120 PATFLVNVNTRKAY 133 (153)
T ss_pred CeEEEEeCCCCEEE
Confidence 99999999998654
No 94
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.10 E-value=9.4e-06 Score=80.97 Aligned_cols=68 Identities=10% Similarity=0.068 Sum_probs=49.9
Q ss_pred CCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCcc
Q 004888 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (725)
Q Consensus 138 ~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i 217 (725)
+++|+|+|+++||+.|+.|.. ++. ++++.. .+...+|||+++. ++...| ++.++||++|+- +|+++
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~-~l~--~LA~~~-~~vkF~kVd~d~~-~l~~~f--------~v~~vPTlllyk-~G~~v 148 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNS-SLL--CLAAEY-PAVKFCKIRASAT-GASDEF--------DTDALPALLVYK-GGELI 148 (175)
T ss_pred CcEEEEEEECCCCchHHHHHH-HHH--HHHHHC-CCeEEEEEeccch-hhHHhC--------CCCCCCEEEEEE-CCEEE
Confidence 359999999999999999984 222 333332 2578899999865 555444 888999999884 78887
Q ss_pred cc
Q 004888 218 MG 219 (725)
Q Consensus 218 ~~ 219 (725)
..
T Consensus 149 ~~ 150 (175)
T cd02987 149 GN 150 (175)
T ss_pred EE
Confidence 53
No 95
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.08 E-value=7.9e-06 Score=69.84 Aligned_cols=61 Identities=23% Similarity=0.239 Sum_probs=44.3
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCc
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~ 216 (725)
+.-|+++||++|+.|.. .++ ++++..+..+..++||.++.+++.+.| |+.+.|++++ +|+.
T Consensus 3 v~~f~~~~C~~C~~~~~-~l~--~l~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~vPt~~~---~g~~ 63 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKR-VVE--EVAKEMGDAVEVEYINVMENPQKAMEY--------GIMAVPAIVI---NGDV 63 (82)
T ss_pred EEEEECCCCcchHHHHH-HHH--HHHHHhcCceEEEEEeCccCHHHHHHc--------CCccCCEEEE---CCEE
Confidence 45688999999999984 221 233334545778899999888776554 8889999986 6664
No 96
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=4e-06 Score=86.27 Aligned_cols=71 Identities=18% Similarity=0.177 Sum_probs=56.5
Q ss_pred HHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc--CcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEE
Q 004888 132 AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (725)
Q Consensus 132 ~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~--~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vf 209 (725)
+.++.-+|.|+|+|+++||++|+... |-...+-|+ .+|.+|||+++-......+ |+...||+||
T Consensus 15 ~ls~ag~k~v~Vdfta~wCGPCk~Ia------P~Fs~lankYp~aVFlkVdVd~c~~taa~~--------gV~amPTFif 80 (288)
T KOG0908|consen 15 ELSAAGGKLVVVDFTASWCGPCKRIA------PIFSDLANKYPGAVFLKVDVDECRGTAATN--------GVNAMPTFIF 80 (288)
T ss_pred hhhccCceEEEEEEEecccchHHhhh------hHHHHhhhhCcccEEEEEeHHHhhchhhhc--------CcccCceEEE
Confidence 34567789999999999999999997 555555565 6999999999876666554 8999999999
Q ss_pred ecCCCCcc
Q 004888 210 LSPDLKPL 217 (725)
Q Consensus 210 l~pdG~~i 217 (725)
+-. |+.+
T Consensus 81 f~n-g~ki 87 (288)
T KOG0908|consen 81 FRN-GVKI 87 (288)
T ss_pred Eec-CeEe
Confidence 854 4444
No 97
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.01 E-value=2e-05 Score=83.91 Aligned_cols=76 Identities=14% Similarity=0.148 Sum_probs=48.2
Q ss_pred HhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-C--cEEEEEcCCCCc---chHHHHHHHHHHhcCCCCcCcE
Q 004888 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-W--FVSIKVDREERP---DVDKVYMTYVQALYGGGGWPLS 207 (725)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~--FV~VkvD~ee~p---d~~~~y~~~~q~~~g~~G~P~~ 207 (725)
+.-.+|+++|+|+++||+.|+.|. |.+.++-++ + ++.|.+|.+..+ .... -....+ .+|+.++|++
T Consensus 162 ~~l~~k~~Lv~F~AswCp~C~~~~------P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~-d~~la~-~~gV~~vPtl 233 (271)
T TIGR02740 162 KDLAKKSGLFFFFKSDCPYCHQQA------PILQAFEDRYGIEVLPVSVDGGPLPGFPNARP-DAGQAQ-QLKIRTVPAV 233 (271)
T ss_pred HHhcCCeEEEEEECCCCccHHHHh------HHHHHHHHHcCcEEEEEeCCCCccccCCcccC-CHHHHH-HcCCCcCCeE
Confidence 344589999999999999999987 555555544 3 444444443221 1100 001112 2489999999
Q ss_pred EEecCCCCcc
Q 004888 208 VFLSPDLKPL 217 (725)
Q Consensus 208 vfl~pdG~~i 217 (725)
+|++++|+.+
T Consensus 234 ~Lv~~~~~~v 243 (271)
T TIGR02740 234 FLADPDPNQF 243 (271)
T ss_pred EEEECCCCEE
Confidence 9999976544
No 98
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.00 E-value=2.2e-05 Score=76.80 Aligned_cols=99 Identities=18% Similarity=0.197 Sum_probs=58.3
Q ss_pred HhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCcchHHHHHH--------------HHHHh
Q 004888 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMT--------------YVQAL 198 (725)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~pd~~~~y~~--------------~~q~~ 198 (725)
+.-++|+++|.|+++||+.|+.... .|. ++++.+++ .+..|-|+.++.++....|.+ .....
T Consensus 57 ~~~~~k~~~l~f~a~~C~~C~~~~~-~l~--~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 133 (173)
T PRK03147 57 KDLKGKGVFLNFWGTWCKPCEKEMP-YMN--ELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDA 133 (173)
T ss_pred HHcCCCEEEEEEECCcCHHHHHHHH-HHH--HHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHH
Confidence 3346899999999999999987542 222 33333332 355555555433322111111 11223
Q ss_pred cCCCCcCcEEEecCCCCcccc-ccccCCCCCCCcchHHHHHHHH
Q 004888 199 YGGGGWPLSVFLSPDLKPLMG-GTYFPPEDKYGRPGFKTILRKV 241 (725)
Q Consensus 199 ~g~~G~P~~vfl~pdG~~i~~-~tY~p~~~~~~~~~F~~~L~~i 241 (725)
+|+.++|++++++++|+++.. .+..+.+ .+.+.|+++
T Consensus 134 ~~v~~~P~~~lid~~g~i~~~~~g~~~~~------~l~~~l~~~ 171 (173)
T PRK03147 134 YGVGPLPTTFLIDKDGKVVKVITGEMTEE------QLEEYLEKI 171 (173)
T ss_pred cCCCCcCeEEEECCCCcEEEEEeCCCCHH------HHHHHHHHh
Confidence 588899999999999998854 2333322 455555544
No 99
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=97.99 E-value=0.00075 Score=73.70 Aligned_cols=241 Identities=15% Similarity=0.141 Sum_probs=149.7
Q ss_pred cHHHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCchhHHHHH-HHHHHHHHHHHccCChHHHHHHHHHHHHH
Q 004888 334 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQG-QLANVYLDAFSLTKDVFYSYICRDILDYL 412 (725)
Q Consensus 334 ~~~~~~~~~~TL~~ma~gGi~D~v~GGF~RYs~D~~W~vPHFEKMLyDNA-~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl 412 (725)
+++.++.+...++.+... ......|||.+..... ..+..|+- ..+..++.++..++|+.|.+.|.+-+.-.
T Consensus 85 d~~y~~~~~~~a~~~l~~-~~~~~~G~~~~~~~~~-------~~~wiD~~~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~ 156 (336)
T PF07470_consen 85 DEKYKDAAIQAADWLLAR-RPRTSDGGFWHNRPYP-------NQVWIDGMYMNLPFLAWAGKLTGDPKYLDEAVRQFRLT 156 (336)
T ss_dssp THHHHHHHHHHHHHHHHT-SCBECTGCBECTTTST-------TEEETTHHHHHHHHHHHHHHHHTGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh-CCCCCCCccccCCCCC-------CceeeccccccHHHHHHHHHHHCCcHHHHHHHHHHHHH
Confidence 478889999999944432 3333468888722222 33346755 57888899999999999999888777777
Q ss_pred HHhccCCC-CceeeeccCCCccccccccccCcceEEechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCc
Q 004888 413 RRDMIGPG-GEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGK 491 (725)
Q Consensus 413 ~~~m~~~~-Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~lg~~~~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~ 491 (725)
.+.+++++ |-|++..+.++.. ..+-..|+
T Consensus 157 ~~~~~d~~tGl~~h~~~~~~~~--------~~s~~~Ws------------------------------------------ 186 (336)
T PF07470_consen 157 RKYLYDPETGLYYHGYTYQGYA--------DWSDSFWS------------------------------------------ 186 (336)
T ss_dssp HHHHB-TTTSSBESEEETTSSS--------TTST--BH------------------------------------------
T ss_pred HHhccCCCCCceeeccCCCCCc--------CcccccCc------------------------------------------
Confidence 77788886 7677766654420 00001222
Q ss_pred ceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCCCCCCcchhhhcHHHHHHHHHHHHHHhhhhhhhhcccC
Q 004888 492 NVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNF 571 (725)
Q Consensus 492 nvL~~~~~~~~~a~~~g~~~e~~~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal~I~aLa~A~~vl~d~~~~~~~~~ 571 (725)
--||.++.+|+++++.+.+..+.
T Consensus 187 ----------------------------------------------------RG~gW~~~Gl~~~l~~lp~~~~~----- 209 (336)
T PF07470_consen 187 ----------------------------------------------------RGNGWAIYGLAEVLEYLPEDHPE----- 209 (336)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHHHHHHTTHHH-----
T ss_pred ----------------------------------------------------chhhHHHHHHHHHHHHhcchhhh-----
Confidence 13699999999999998541110
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcc--hHHHHHHHHHHHHHH--cCCHHHHHHHHH
Q 004888 572 PVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLD--DYAFLISGLLDLYEF--GSGTKWLVWAIE 647 (725)
Q Consensus 572 ~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~le--DyA~li~aLL~LYe~--Tgd~~yL~~A~~ 647 (725)
.+.+++.++++++.+. ++.+ ++|..+....+.. ...+.| .-|.++.||+...+. ..++.|++.|++
T Consensus 210 ------~~~~~~~~~~~~~~l~-~~q~-~~G~w~~~~~~~~--~~~~~etSatA~~a~~l~~gi~~g~~d~~~y~~~a~~ 279 (336)
T PF07470_consen 210 ------RDELLEIAKKLADALA-RYQD-EDGLWYQDLDDPD--PGNYRETSATAMFAYGLLRGIRLGLLDPEEYRPAAEK 279 (336)
T ss_dssp ------HHHHHHHHHHHHHHHH-TTST-TTSBEBSBTTTTT--TTS-BEHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHH-hcCC-CCCCcceecCCCC--CCCcccHHHHHHHHHHHHHHHHcCCCccHHHHHHHHH
Confidence 2678999999998876 4445 4565444344333 123333 346777888764333 225799999999
Q ss_pred HHHHHHHHccccCCCc--ccccCCCCCcc--ccccccCCCCCCCChHHHHHHHHHHHHHh
Q 004888 648 LQNTQDELFLDREGGG--YFNTTGEDPSV--LLRVKEDHDGAEPSGNSVSVINLVRLASI 703 (725)
Q Consensus 648 L~~~~~~~F~D~~~Gg--yf~t~~~~~~~--~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~ 703 (725)
.++.+.++-.+++ |. +-......+.. ..+. .....|.|.+-...++.++.++
T Consensus 280 a~~~l~~~~~~~d-G~~~~~~~~~~~~~~~Y~~~~---~~~~~~~G~g~fl~A~~e~~r~ 335 (336)
T PF07470_consen 280 ALEALLSNAIDPD-GKLGLKGVCGGTPVGGYQGRD---YNVNDPYGDGYFLLALAEYERL 335 (336)
T ss_dssp HHHHHHHCEB-TT-SSSBBTCEBETTTS-SHHTEE---EECCSHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHhCccCCC-CCeEEeeeEeecCCCCCCCCC---CCCCcCcHHHHHHHHHHHHHHh
Confidence 9999999834544 33 44433322200 1111 1223477888888888777654
No 100
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.96 E-value=1.9e-05 Score=70.53 Aligned_cols=65 Identities=14% Similarity=0.168 Sum_probs=54.5
Q ss_pred CCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCC--CcCcEEEecCC
Q 004888 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGG--GWPLSVFLSPD 213 (725)
Q Consensus 138 ~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~--G~P~~vfl~pd 213 (725)
++|++|.|+++||..|+.|.. .|+ +|++.++..+..++||.++.+++.+.| |+. ++|+.+++...
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~-~~~--~vA~~~~~~v~f~~vd~~~~~~~~~~~--------~i~~~~~P~~~~~~~~ 78 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRE-RFK--EVAKKFKGKLLFVVVDADDFGRHLEYF--------GLKEEDLPVIAIINLS 78 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHH-HHH--HHHHHhCCeEEEEEEchHhhHHHHHHc--------CCChhhCCEEEEEecc
Confidence 799999999999999999974 443 778888777999999999877766554 776 99999999884
No 101
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.96 E-value=1.9e-05 Score=89.54 Aligned_cols=69 Identities=16% Similarity=0.297 Sum_probs=51.7
Q ss_pred hhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCc-ch-HHHHHHHHHHhcCCCCcCcEEEec
Q 004888 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERP-DV-DKVYMTYVQALYGGGGWPLSVFLS 211 (725)
Q Consensus 135 k~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~p-d~-~~~y~~~~q~~~g~~G~P~~vfl~ 211 (725)
++.+|||||.|+++||+.|+.|+.. | +++++.+.. ....++||.+..+ ++ .+.| ++.++||++|+.
T Consensus 368 ~~~~k~VLV~FyApWC~~Ck~m~P~-~--eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~--------~I~~~PTii~Fk 436 (463)
T TIGR00424 368 EERKEAWLVVLYAPWCPFCQAMEAS-Y--LELAEKLAGSGVKVAKFRADGDQKEFAKQEL--------QLGSFPTILFFP 436 (463)
T ss_pred hcCCCeEEEEEECCCChHHHHHHHH-H--HHHHHHhccCCcEEEEEECCCCccHHHHHHc--------CCCccceEEEEE
Confidence 5689999999999999999999864 4 567777654 3667778777543 22 2233 788999999996
Q ss_pred CCC
Q 004888 212 PDL 214 (725)
Q Consensus 212 pdG 214 (725)
.+.
T Consensus 437 ~g~ 439 (463)
T TIGR00424 437 KHS 439 (463)
T ss_pred CCC
Confidence 653
No 102
>PLN02309 5'-adenylylsulfate reductase
Probab=97.95 E-value=1.5e-05 Score=90.27 Aligned_cols=72 Identities=19% Similarity=0.362 Sum_probs=54.7
Q ss_pred HHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCC-CCcchHHHHHHHHHHhcCCCCcCcEEEe
Q 004888 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDRE-ERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (725)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~e-e~pd~~~~y~~~~q~~~g~~G~P~~vfl 210 (725)
+.+.++|++||.|+++||+.|+.|+. .|. ++++.++. ++..++||.+ +..++.+ ..+++.++||++|+
T Consensus 360 ~~~~~~k~vlV~FyApWC~~Cq~m~p-~~e--~LA~~~~~~~V~f~kVD~d~~~~~la~-------~~~~I~~~PTil~f 429 (457)
T PLN02309 360 KLENRKEPWLVVLYAPWCPFCQAMEA-SYE--ELAEKLAGSGVKVAKFRADGDQKEFAK-------QELQLGSFPTILLF 429 (457)
T ss_pred HhhcCCCeEEEEEECCCChHHHHHHH-HHH--HHHHHhccCCeEEEEEECCCcchHHHH-------hhCCCceeeEEEEE
Confidence 34578999999999999999999975 354 67777754 5999999998 5444332 11388899999999
Q ss_pred cCCC
Q 004888 211 SPDL 214 (725)
Q Consensus 211 ~pdG 214 (725)
.+..
T Consensus 430 ~~g~ 433 (457)
T PLN02309 430 PKNS 433 (457)
T ss_pred eCCC
Confidence 6543
No 103
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.87 E-value=5.4e-05 Score=76.11 Aligned_cols=97 Identities=7% Similarity=0.002 Sum_probs=68.0
Q ss_pred CCCCccccchHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEE------EEEcCCCCcchHHHH
Q 004888 118 HNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVS------IKVDREERPDVDKVY 191 (725)
Q Consensus 118 ~~~V~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~------VkvD~ee~pd~~~~y 191 (725)
.+.+...+|..+.+. ||..+|.|+|+||..|+.-. |-+.++=.++|.. +-||.++.+.....|
T Consensus 44 ~~~~~y~~~~~~~l~-----GKV~lvn~~Aswc~~c~~e~------P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~f 112 (184)
T TIGR01626 44 GKDTVYQPWGSAELA-----GKVRVVHHIAGRTSAKEXNA------SLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMF 112 (184)
T ss_pred CCcccceeccHHHcC-----CCEEEEEEEecCCChhhccc------hHHHHHHHcCCCcccccceEEEECccchhhHHHH
Confidence 477888888655554 99999999999999999754 6666665567877 778877654333233
Q ss_pred HH---------------------HHHHhcCCCCcCcE-EEecCCCCcccc-ccccCC
Q 004888 192 MT---------------------YVQALYGGGGWPLS-VFLSPDLKPLMG-GTYFPP 225 (725)
Q Consensus 192 ~~---------------------~~q~~~g~~G~P~~-vfl~pdG~~i~~-~tY~p~ 225 (725)
.+ .....+|+.|.|.+ +|+|++|++.+. .++++.
T Consensus 113 Vk~fie~~~~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ 169 (184)
T TIGR01626 113 VKSSAKKGKKENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSD 169 (184)
T ss_pred HHHHHHHhcccCCcceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCH
Confidence 11 11223578899888 799999998875 345544
No 104
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.83 E-value=2.5e-05 Score=67.09 Aligned_cols=65 Identities=18% Similarity=0.104 Sum_probs=43.2
Q ss_pred EEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCccccccc
Q 004888 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTY 222 (725)
Q Consensus 143 l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~~~tY 222 (725)
|.|+++||++|+.|.. .+ .++++.++..+..++|| + ++.... +|+.+.|++++ ||+.+..| .
T Consensus 3 i~~~a~~C~~C~~~~~-~~--~~~~~e~~~~~~~~~v~--~-~~~a~~--------~~v~~vPti~i---~G~~~~~G-~ 64 (76)
T TIGR00412 3 IQIYGTGCANCQMTEK-NV--KKAVEELGIDAEFEKVT--D-MNEILE--------AGVTATPGVAV---DGELVIMG-K 64 (76)
T ss_pred EEEECCCCcCHHHHHH-HH--HHHHHHcCCCeEEEEeC--C-HHHHHH--------cCCCcCCEEEE---CCEEEEEe-c
Confidence 7789999999999973 22 24445454457777777 2 222222 38899999998 88887433 3
Q ss_pred cCC
Q 004888 223 FPP 225 (725)
Q Consensus 223 ~p~ 225 (725)
.|.
T Consensus 65 ~~~ 67 (76)
T TIGR00412 65 IPS 67 (76)
T ss_pred cCC
Confidence 453
No 105
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.82 E-value=3.3e-05 Score=96.27 Aligned_cols=99 Identities=15% Similarity=0.219 Sum_probs=60.0
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc----CcEEEEEcC---CCCcchHH--HHHH--------------
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND----WFVSIKVDR---EERPDVDK--VYMT-------------- 193 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~----~FV~VkvD~---ee~pd~~~--~y~~-------------- 193 (725)
.||+|+|+|+++||+.|+.+. |.+.++-++ .|+.|-|.. ++..+..+ .+..
T Consensus 419 kGK~vll~FWAsWC~pC~~e~------P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~ 492 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVL------PDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDM 492 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHh------HHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCch
Confidence 599999999999999999765 455444332 377776631 22111111 1100
Q ss_pred HHHHhcCCCCcCcEEEecCCCCccccc-cccCCCCCCCcchHHHHHHHHHHHHhh
Q 004888 194 YVQALYGGGGWPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKVKDAWDK 247 (725)
Q Consensus 194 ~~q~~~g~~G~P~~vfl~pdG~~i~~~-tY~p~~~~~~~~~F~~~L~~i~~~~~~ 247 (725)
.....+++.|+|+++|++++|+++... +... .+.+.++|+.+...|.+
T Consensus 493 ~~~~~~~V~~iPt~ilid~~G~iv~~~~G~~~------~~~l~~~l~~~l~~~~~ 541 (1057)
T PLN02919 493 YLWRELGVSSWPTFAVVSPNGKLIAQLSGEGH------RKDLDDLVEAALQYYGE 541 (1057)
T ss_pred HHHHhcCCCccceEEEECCCCeEEEEEecccC------HHHHHHHHHHHHHhhcc
Confidence 011235889999999999999988542 2122 23566666666655553
No 106
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=97.80 E-value=5.5e-05 Score=70.65 Aligned_cols=84 Identities=19% Similarity=0.167 Sum_probs=52.9
Q ss_pred HHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHh----cCcEEEEEcCC-----CCcchHHHHHHH------
Q 004888 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN----DWFVSIKVDRE-----ERPDVDKVYMTY------ 194 (725)
Q Consensus 130 Al~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln----~~FV~VkvD~e-----e~pd~~~~y~~~------ 194 (725)
.+..+.-.||+++|.|+++||+.|+..- |.+.++.+ +.+..|-|..+ ..++..+.|.+.
T Consensus 15 ~v~l~~~~gk~vvl~F~a~~C~~C~~~~------p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p 88 (126)
T cd03012 15 PLSLAQLRGKVVLLDFWTYCCINCLHTL------PYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYP 88 (126)
T ss_pred ccCHHHhCCCEEEEEEECCCCccHHHHH------HHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCC
Confidence 3444445789999999999999999764 34433333 24566666542 223222222211
Q ss_pred --------HHHhcCCCCcCcEEEecCCCCcccc
Q 004888 195 --------VQALYGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 195 --------~q~~~g~~G~P~~vfl~pdG~~i~~ 219 (725)
+...+++.++|+++++|++|++++.
T Consensus 89 ~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~ 121 (126)
T cd03012 89 VANDNDYATWRAYGNQYWPALYLIDPTGNVRHV 121 (126)
T ss_pred EEECCchHHHHHhCCCcCCeEEEECCCCcEEEE
Confidence 1122477899999999999998854
No 107
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.79 E-value=6.3e-05 Score=75.73 Aligned_cols=75 Identities=16% Similarity=0.218 Sum_probs=48.6
Q ss_pred hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHH---hcCcEEEEEcCCCCcchHHHHHH-------------HHHHhc
Q 004888 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLL---NDWFVSIKVDREERPDVDKVYMT-------------YVQALY 199 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~l---n~~FV~VkvD~ee~pd~~~~y~~-------------~~q~~~ 199 (725)
..|||++|.|+++||+.|+.+. |.+.++- +.+++.|..| ...+. +.|.+ .....+
T Consensus 72 ~~gk~vvl~F~atwCp~C~~~l------p~l~~~~~~~~~~vv~Is~~--~~~~~-~~~~~~~~~~~~~~~~~~~i~~~y 142 (189)
T TIGR02661 72 APGRPTLLMFTAPSCPVCDKLF------PIIKSIARAEETDVVMISDG--TPAEH-RRFLKDHELGGERYVVSAEIGMAF 142 (189)
T ss_pred cCCCEEEEEEECCCChhHHHHH------HHHHHHHHhcCCcEEEEeCC--CHHHH-HHHHHhcCCCcceeechhHHHHhc
Confidence 3689999999999999999875 3333333 3345666532 11111 12211 111235
Q ss_pred CCCCcCcEEEecCCCCcccc
Q 004888 200 GGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 200 g~~G~P~~vfl~pdG~~i~~ 219 (725)
++.+.|+++++|++|+.++.
T Consensus 143 ~v~~~P~~~lID~~G~I~~~ 162 (189)
T TIGR02661 143 QVGKIPYGVLLDQDGKIRAK 162 (189)
T ss_pred cCCccceEEEECCCCeEEEc
Confidence 88899999999999998865
No 108
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.78 E-value=7.3e-05 Score=76.73 Aligned_cols=76 Identities=21% Similarity=0.311 Sum_probs=54.8
Q ss_pred HHHHHHHhhcCCcEEEE-EeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCc
Q 004888 128 EEAFAEARKRDVPIFLS-IGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~-~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~ 206 (725)
++..+..++.++||.|. |+++||++|+.|.. .+ .+++.. +.+...++||.++.|++...| |+.+.|+
T Consensus 122 ~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~-~l--~~l~~~-~~~i~~~~vD~~~~~~~~~~~--------~V~~vPt 189 (215)
T TIGR02187 122 EKTVELLQSLDEPVRIEVFVTPTCPYCPYAVL-MA--HKFALA-NDKILGEMIEANENPDLAEKY--------GVMSVPK 189 (215)
T ss_pred HHHHHHHHhcCCCcEEEEEECCCCCCcHHHHH-HH--HHHHHh-cCceEEEEEeCCCCHHHHHHh--------CCccCCE
Confidence 44566666788897776 89999999999873 22 123222 335666789999988887766 8889999
Q ss_pred EEEecCCCCc
Q 004888 207 SVFLSPDLKP 216 (725)
Q Consensus 207 ~vfl~pdG~~ 216 (725)
++|. .+|+.
T Consensus 190 l~i~-~~~~~ 198 (215)
T TIGR02187 190 IVIN-KGVEE 198 (215)
T ss_pred EEEe-cCCEE
Confidence 9986 45654
No 109
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.76 E-value=5.5e-05 Score=62.57 Aligned_cols=63 Identities=24% Similarity=0.251 Sum_probs=43.9
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCcccc
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~~ 219 (725)
++.|+++||++|+.|+. .+ .++++ .+.++...++|.++.+++.+.| |+.+.|+++| +|+.++.
T Consensus 3 v~~f~~~~C~~C~~~~~-~l--~~l~~-~~~~i~~~~id~~~~~~l~~~~--------~i~~vPti~i---~~~~~~~ 65 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQ-AA--NRIAA-LNPNISAEMIDAAEFPDLADEY--------GVMSVPAIVI---NGKVEFV 65 (67)
T ss_pred EEEEECCCCCCcHHHHH-HH--HHHHH-hCCceEEEEEEcccCHhHHHHc--------CCcccCEEEE---CCEEEEe
Confidence 45689999999999974 22 23322 2345778889998888766554 8889999876 4565543
No 110
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.68 E-value=8.6e-05 Score=65.96 Aligned_cols=74 Identities=19% Similarity=0.099 Sum_probs=55.1
Q ss_pred HHHhhcCCcEEEE-EeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEe
Q 004888 132 AEARKRDVPIFLS-IGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (725)
Q Consensus 132 ~~Ak~e~KpI~l~-~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl 210 (725)
+.+++-++||=|. |+++||+||..+..-. .++++. +.++-..++|+++.+++.+.| |+.+.|++++
T Consensus 5 ~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~---~~l~~~-~~~i~~~~vd~~~~~e~a~~~--------~V~~vPt~vi- 71 (89)
T cd03026 5 EQIRRLNGPINFETYVSLSCHNCPDVVQAL---NLMAVL-NPNIEHEMIDGALFQDEVEER--------GIMSVPAIFL- 71 (89)
T ss_pred HHHHhcCCCEEEEEEECCCCCCcHHHHHHH---HHHHHH-CCCceEEEEEhHhCHHHHHHc--------CCccCCEEEE-
Confidence 4455778885544 7889999999987533 455543 346888888998888887776 8889999986
Q ss_pred cCCCCccccc
Q 004888 211 SPDLKPLMGG 220 (725)
Q Consensus 211 ~pdG~~i~~~ 220 (725)
||+.++.|
T Consensus 72 --dG~~~~~G 79 (89)
T cd03026 72 --NGELFGFG 79 (89)
T ss_pred --CCEEEEeC
Confidence 78877653
No 111
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.65 E-value=0.0001 Score=75.70 Aligned_cols=70 Identities=20% Similarity=0.290 Sum_probs=49.0
Q ss_pred hcCCcEEEEEe--ccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecC
Q 004888 136 KRDVPIFLSIG--YSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP 212 (725)
Q Consensus 136 ~e~KpI~l~~g--~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~p 212 (725)
+.++.|++++. ++||++|+.|.. +++ ++++...+ .++.|++|.++.+++.+.| ++.+.||++|+.
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p-~l~--~la~~~~~~~i~~v~vd~~~~~~l~~~~--------~V~~~Pt~~~f~- 85 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQ-LLE--ELSEVSPKLKLEIYDFDTPEDKEEAEKY--------GVERVPTTIILE- 85 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHH-HHH--HHHhhCCCceEEEEecCCcccHHHHHHc--------CCCccCEEEEEe-
Confidence 34566666444 499999999984 222 34444432 3567888888888888777 889999999986
Q ss_pred CCCcc
Q 004888 213 DLKPL 217 (725)
Q Consensus 213 dG~~i 217 (725)
+|+.+
T Consensus 86 ~g~~~ 90 (215)
T TIGR02187 86 EGKDG 90 (215)
T ss_pred CCeee
Confidence 46654
No 112
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=97.62 E-value=0.0023 Score=64.61 Aligned_cols=145 Identities=17% Similarity=0.228 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecC-C-----CC--CCCC
Q 004888 546 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN-G-----PS--KAPG 617 (725)
Q Consensus 546 Nal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~-g-----~~--~~~~ 617 (725)
+|.+|+.|++|+.+++| ++|+++|+++.+...-.. +.|++.....+ + =+ ...-
T Consensus 32 QG~a~s~l~RAy~~t~d----------------~~Yl~aA~~al~~f~~~~---~~GG~~~~~~~~~~wyeEYp~~p~s~ 92 (189)
T PF06662_consen 32 QGQAISVLARAYQLTGD----------------EKYLDAAKKALNSFKVPV---EEGGVLATFKNKYPWYEEYPTTPPSY 92 (189)
T ss_pred HHHHHHHHHHHHHhHCC----------------HHHHHHHHHHHHHhcChH---hhCCeeEEecCCcEeEeecCCCCCCE
Confidence 47779999999999998 899999999998875432 23444433332 1 11 2235
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--cccCCCcccccCCCCCccccccccCCCCCCCChHHHHHH
Q 004888 618 FLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELF--LDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVI 695 (725)
Q Consensus 618 ~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F--~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~ 695 (725)
.++++.+.+.||-+++..+++.+..+.-.+-.+.+...+ +|...+.+|+-..- . .. .. ..-+.+.=-.+...
T Consensus 93 VLNGfiysL~GLyd~~~~~~~~~A~~lf~~Gl~sLk~~Lp~yD~G~wS~Ydl~h~--~--~~-~~-~~~a~~~YH~lHi~ 166 (189)
T PF06662_consen 93 VLNGFIYSLIGLYDYYRLTGDEEAKELFDKGLKSLKKMLPLYDTGSWSRYDLRHF--T--LG-NA-PNIARWDYHRLHIQ 166 (189)
T ss_pred EeehHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhcCCCchhhcccc--c--cc-cC-cCcCcchHHHHHHH
Confidence 788999999999999999999877654444444433332 36544456663110 0 00 00 00011222246778
Q ss_pred HHHHHHHhhCCCCchHHHHHHHH
Q 004888 696 NLVRLASIVAGSKSDYYRQNAEH 718 (725)
Q Consensus 696 ~LlrL~~~t~~~~~~~y~~~A~~ 718 (725)
-|..|+.+|++ +.+++.|++
T Consensus 167 qL~~L~~it~d---~~f~~~a~r 186 (189)
T PF06662_consen 167 QLKWLYSITGD---PIFKEYAER 186 (189)
T ss_pred HHHHHHHhcCC---HHHHHHHHH
Confidence 88999999997 788888775
No 113
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.58 E-value=0.00014 Score=81.84 Aligned_cols=69 Identities=19% Similarity=0.289 Sum_probs=53.5
Q ss_pred HhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc---CcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEe
Q 004888 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (725)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~---~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl 210 (725)
....+|+|+|.|+++||+.|+.|... | .++++.++. .+..+++|.+.+. +.. | ++.++|+++|+
T Consensus 360 v~~~~~~vlv~f~a~wC~~C~~~~p~-~--~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~--------~i~~~Pt~~~~ 426 (462)
T TIGR01130 360 VLDETKDVLVEFYAPWCGHCKNLAPI-Y--EELAEKYKDAESDVVIAKMDATAND-VPP-F--------EVEGFPTIKFV 426 (462)
T ss_pred hccCCCeEEEEEECCCCHhHHHHHHH-H--HHHHHHhhcCCCcEEEEEEECCCCc-cCC-C--------CccccCEEEEE
Confidence 35679999999999999999999764 3 457777776 6889999998653 221 3 67799999999
Q ss_pred cCCCC
Q 004888 211 SPDLK 215 (725)
Q Consensus 211 ~pdG~ 215 (725)
...++
T Consensus 427 ~~~~~ 431 (462)
T TIGR01130 427 PAGKK 431 (462)
T ss_pred eCCCC
Confidence 66554
No 114
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=97.55 E-value=0.01 Score=63.66 Aligned_cols=147 Identities=15% Similarity=0.130 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHH
Q 004888 549 VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISG 628 (725)
Q Consensus 549 ~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~leDyA~li~a 628 (725)
++.+|..+++.+++ +.+.+.+.++++++.+......++..+...........++..+.+=.+.+
T Consensus 104 ~~~~ll~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~HG~~Gi~~~ 167 (343)
T cd04434 104 LLLALLLLYKTFGE----------------EIFLELIRKILDYLLELGKNGDGKIRWPMYFPEGRVNLGLAHGLAGILLA 167 (343)
T ss_pred HHHHHHHHHHhcCC----------------cCHHHHHHHHHHHHHHhhhhccCCCceeeeccCCccccchhhhhHHHHHH
Confidence 35677778877765 67899999999999887654333322211111122334777788888999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHhhCCCC
Q 004888 629 LLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSK 708 (725)
Q Consensus 629 LL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~t~~~~ 708 (725)
|+.+++.+.++.+.+.++.+.......+ +..++.|+...... .......--.|++=.+..+++++..+++
T Consensus 168 l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~wChG~~Gi~~~l~~~~~~~~~-- 237 (343)
T cd04434 168 LLLLYKKTVDKSLEALIKALLKYERRLQ-DDSGGFWWPSRSNG-------GNRFLVAWCHGAPGILLALLLAYKALGD-- 237 (343)
T ss_pred HHHHHHhcCChhHHHHHHHHHHHHHHcc-CCCCCCCCCCCCCC-------CccccceecCCChhHHHHHHHHHHHcCc--
Confidence 9999999988888888888887766655 44444444311110 0111122345666678888899999986
Q ss_pred chHHHHHHHHHHHH
Q 004888 709 SDYYRQNAEHSLYL 722 (725)
Q Consensus 709 ~~~y~~~A~~~l~~ 722 (725)
+.+.+.+++++..
T Consensus 238 -~~~~~~~~~~~~~ 250 (343)
T cd04434 238 -DKYDEAAEKALEL 250 (343)
T ss_pred -HHHHHHHHHHHHH
Confidence 6788888777654
No 115
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=97.55 E-value=0.0062 Score=74.49 Aligned_cols=251 Identities=20% Similarity=0.279 Sum_probs=149.1
Q ss_pred ecCCCCCCCCCchhHHH-HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCC-----CCceeeeccCCCccccccc
Q 004888 365 SVDERWHVPHFEKMLYD-QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGP-----GGEIFSAEDADSAETEGAT 438 (725)
Q Consensus 365 s~D~~W~vPHFEKMLyD-NA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~-----~Ggfysa~DADs~~~~~~~ 438 (725)
..+..|.+-.-.=.||+ -|-++.+|+..+++++++.|.+.|+++++.+...+... +-|+|+
T Consensus 475 ~~~~~~~~~~~~~~LY~G~aGIal~l~~l~~~t~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~gl~~------------- 541 (825)
T cd04792 475 SDGDEWELSPLGNDLYDGSAGIALFLAYLGQLTGDERYTRLARKILDSLVKSLSELKTDDTGIGAFS------------- 541 (825)
T ss_pred cCCCcEEEecCCCcccCChHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHhcccccccCceeEe-------------
Confidence 34456765456667888 89999999999999999999999999999988765431 122332
Q ss_pred cccCcceEEechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHH
Q 004888 439 RKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNIL 518 (725)
Q Consensus 439 ~~~EGayY~wt~~Ei~~~lg~~~~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~e~~~~~l 518 (725)
|..|-.| ....+.+.+++ +.+.+.+
T Consensus 542 -G~aGi~~--~L~~l~~~~~~----------------------------------------------------~~~~~~a 566 (825)
T cd04792 542 -GLGGILY--ALTHLGKLLKD----------------------------------------------------DRLLNLA 566 (825)
T ss_pred -chhHHHH--HHHHHHHHcCC----------------------------------------------------HHHHHHH
Confidence 1222211 11112221111 1122222
Q ss_pred HHHHHHHHhhhccCCCCCCCcchhhhcHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccc
Q 004888 519 GECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYD 598 (725)
Q Consensus 519 ~~~r~kL~~~R~~R~~P~lDdKiitsWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d 598 (725)
..+.+.+.+.-. ..... -++..+-| ++.+|+.+++.+++ +.+++.|+++++++.+....
T Consensus 567 ~~~~~~l~~~~~--~~~~~--D~~~G~aG-ii~~Ll~l~~~~~~----------------~~~l~~a~~~~~~l~~~~~~ 625 (825)
T cd04792 567 KEILDLIDELIE--KDEKL--DFISGAAG-LILVLLSLYELFLS----------------ERFLDLALKCGDHLLENASN 625 (825)
T ss_pred HHHHHHHHHhhc--cccCC--CEeeecHH-HHHHHHHHHhccCC----------------hHHHHHHHHHHHHHHHhhhh
Confidence 222222221111 11111 12333333 46677788888876 78999999999998776543
Q ss_pred cCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccc
Q 004888 599 EQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRV 678 (725)
Q Consensus 599 ~~~G~l~~s~~~g~~~~~~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~ 678 (725)
.+.+ .+ ..+.....++..+.+=.+.+|+.+|+.+++++|++.|.++.+.....+ +++.+.|. ..+...
T Consensus 626 ~~~~-~~---~~~~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~~~-~~~~~~w~--~~~~~~----- 693 (825)
T cd04792 626 EDGG-IG---PAEQPNLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERRLF-SEEGWNWP--RKDGNS----- 693 (825)
T ss_pred ccCC-cc---cccccccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhc-CHhhcCCC--CcCcCC-----
Confidence 2222 22 112233457888888889999999999999999999999998776655 33334443 111000
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHHh--hCCCCchHHHHHHHHHHHH
Q 004888 679 KEDHDGAEPSGNSVSVINLVRLASI--VAGSKSDYYRQNAEHSLYL 722 (725)
Q Consensus 679 k~~~D~a~PS~Nsv~a~~LlrL~~~--t~~~~~~~y~~~A~~~l~~ 722 (725)
....--.|.+=.+..+++++.+ +++ +.+.+.+++++..
T Consensus 694 ---~~~~WChG~~GI~lal~~~~~~~~~~d---~~~~~~i~~~~~~ 733 (825)
T cd04792 694 ---FSAAWCHGAPGILLARLELLKFNDLDD---EELKEEIEIALKT 733 (825)
T ss_pred ---CCCcccCCcHHHHHHHHHHHhcCccch---HHHHHHHHHHHHH
Confidence 0111123444456677778887 443 5677777776654
No 116
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=97.48 E-value=0.00049 Score=65.52 Aligned_cols=83 Identities=16% Similarity=0.221 Sum_probs=52.3
Q ss_pred HhhcCCcEEEEEecc-CChhhHhhhhhccCCHHHHHHHh-cCcEEEEEcCCCCcchHHHHHH--------------HHHH
Q 004888 134 ARKRDVPIFLSIGYS-TCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMT--------------YVQA 197 (725)
Q Consensus 134 Ak~e~KpI~l~~g~~-wC~~C~~Me~e~f~d~eVa~~ln-~~FV~VkvD~ee~pd~~~~y~~--------------~~q~ 197 (725)
+.-.||+++|.|+++ ||+.|+..-. .+ .++.+... +.+..|-|..+..+.+.+...+ +.+.
T Consensus 24 ~~~~gk~~vv~f~~~~~Cp~C~~~~p-~l--~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 100 (146)
T PF08534_consen 24 SDFKGKPVVVNFWASAWCPPCRKELP-YL--NELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKA 100 (146)
T ss_dssp GGGTTSEEEEEEESTTTSHHHHHHHH-HH--HHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHH
T ss_pred HHhCCCeEEEEEEccCCCCcchhhhh-hH--HhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHH
Confidence 345799999999999 9999998653 11 23333323 3455555554444433322211 1122
Q ss_pred hcCCC---------CcCcEEEecCCCCccccc
Q 004888 198 LYGGG---------GWPLSVFLSPDLKPLMGG 220 (725)
Q Consensus 198 ~~g~~---------G~P~~vfl~pdG~~i~~~ 220 (725)
++.. ++|+++|++++|++.+..
T Consensus 101 -~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~ 131 (146)
T PF08534_consen 101 -LGVTIMEDPGNGFGIPTTFLIDKDGKVVYRH 131 (146)
T ss_dssp -TTCEEECCTTTTSSSSEEEEEETTSBEEEEE
T ss_pred -hCCccccccccCCeecEEEEEECCCEEEEEE
Confidence 3655 999999999999998764
No 117
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.46 E-value=0.00029 Score=70.67 Aligned_cols=69 Identities=10% Similarity=0.208 Sum_probs=44.7
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCc-----ch-HHHHHHHHHHhcCC--CCcCcEEEecC
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERP-----DV-DKVYMTYVQALYGG--GGWPLSVFLSP 212 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~p-----d~-~~~y~~~~q~~~g~--~G~P~~vfl~p 212 (725)
+|.|+++||++|+... |.+.++-++ .|..|-|.+++.+ .+ +.. .......+|. .++|+++++|+
T Consensus 73 lV~FwaswCp~C~~e~------P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~-~~~~~~~~g~~~~~iPttfLId~ 145 (181)
T PRK13728 73 VVLFMQGHCPYCHQFD------PVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAP-PDVMQTFFPNIPVATPTTFLVNV 145 (181)
T ss_pred EEEEECCCCHhHHHHH------HHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCc-hhHHHHHhCCCCCCCCeEEEEeC
Confidence 6779999999999976 566666555 4666656555432 11 000 0111223353 69999999999
Q ss_pred CCCcc
Q 004888 213 DLKPL 217 (725)
Q Consensus 213 dG~~i 217 (725)
+|+..
T Consensus 146 ~G~i~ 150 (181)
T PRK13728 146 NTLEA 150 (181)
T ss_pred CCcEE
Confidence 99975
No 118
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=97.45 E-value=0.00035 Score=68.10 Aligned_cols=89 Identities=20% Similarity=0.188 Sum_probs=62.8
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcC---cEEEEEcCCCCcchHHHHHH-----------
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW---FVSIKVDREERPDVDKVYMT----------- 193 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~---FV~VkvD~ee~pd~~~~y~~----------- 193 (725)
.+.+....=+||-|.++|.+.||+.|+.+- =.=.++-+.+.++ |-.|-|+++....-...||.
T Consensus 23 ~~~~~~~~l~gKvV~lyFsA~wC~pCR~FT---P~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf 99 (157)
T KOG2501|consen 23 TEVLASEALQGKVVGLYFSAHWCPPCRDFT---PILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPF 99 (157)
T ss_pred ccchHhHhhCCcEEEEEEEEEECCchhhCC---chHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecC
Confidence 344455555789999999999999999763 2334555566667 88888888754332233433
Q ss_pred ------HHHHhcCCCCcCcEEEecCCCCcccc
Q 004888 194 ------YVQALYGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 194 ------~~q~~~g~~G~P~~vfl~pdG~~i~~ 219 (725)
-++..+++.+.|+.+++.|+|+.+..
T Consensus 100 ~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 100 GDDLIQKLSEKYEVKGIPALVILKPDGTVVTE 131 (157)
T ss_pred CCHHHHHHHHhcccCcCceeEEecCCCCEehH
Confidence 12334689999999999999998853
No 119
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=97.41 E-value=0.0018 Score=75.19 Aligned_cols=134 Identities=19% Similarity=0.095 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCC----CCCCCC---
Q 004888 546 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP----SKAPGF--- 618 (725)
Q Consensus 546 Nal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~----~~~~~~--- 618 (725)
-+..++|++.++..++| +++.+.+.++.+.|.+.-.+ +| +...+.... ...+.-
T Consensus 62 ~g~wl~a~a~~~~~~~D----------------~~l~~~~d~~V~~l~~~Q~~--dG-Yl~~~~~~~~~~~~~~w~~~~h 122 (520)
T PF07944_consen 62 VGKWLEAAAYAYAYTGD----------------PELKAKADEIVDELAAAQQP--DG-YLGTYPEERNFNPDDRWAPDMH 122 (520)
T ss_pred HHHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHHHHhccC--Cc-eecccccccccccccCCCCCcc
Confidence 37889999999999998 78999999999999877643 44 545543322 122333
Q ss_pred -cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---ccccCCCcccccCCCCCccccccccCCCCCCCChHHHHH
Q 004888 619 -LDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDEL---FLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSV 694 (725)
Q Consensus 619 -leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~---F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a 694 (725)
++....++.||++.|++||+++.|+.|.++.+.+.+. |-+ +.+ ...-.| +..-+.
T Consensus 123 e~Y~~~~ll~gl~~~y~~tG~~~~L~v~~k~ad~~~~~~~~~~~-~~~-------------------~~~~~~-~~~~i~ 181 (520)
T PF07944_consen 123 ELYCLGKLLEGLIDYYEATGNERALDVATKLADWVYRRLSRLGP-EPG-------------------QKMGYP-EHGGIN 181 (520)
T ss_pred ceehHhHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHhccCCH-HHh-------------------hccccc-ccchHH
Confidence 5566789999999999999999999999999998333 211 100 001111 223455
Q ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 004888 695 INLVRLASIVAGSKSDYYRQNAEHSLYL 722 (725)
Q Consensus 695 ~~LlrL~~~t~~~~~~~y~~~A~~~l~~ 722 (725)
..|.+|+++||+ +.|++.|+..+..
T Consensus 182 ~~l~~LY~~Tgd---~~yL~lA~~f~~~ 206 (520)
T PF07944_consen 182 EALVRLYEITGD---ERYLDLAEYFVDQ 206 (520)
T ss_pred HHHHHHHHHhCC---HHHHHHHHHHHHH
Confidence 899999999997 7899999998864
No 120
>PTZ00062 glutaredoxin; Provisional
Probab=97.41 E-value=0.00034 Score=71.59 Aligned_cols=71 Identities=7% Similarity=-0.029 Sum_probs=51.4
Q ss_pred HHHHHHHhhcC-CcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCc
Q 004888 128 EEAFAEARKRD-VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (725)
Q Consensus 128 ~eAl~~Ak~e~-KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~ 206 (725)
.+.+++..+++ .+++++|+++||+.|+.|.. ++. ++++-. .++..++||++ | ++.+.|+
T Consensus 6 ~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~-vl~--~l~~~~-~~~~F~~V~~d--------~--------~V~~vPt 65 (204)
T PTZ00062 6 KEEKDKLIESNTGKLVLYVKSSKEPEYEQLMD-VCN--ALVEDF-PSLEFYVVNLA--------D--------ANNEYGV 65 (204)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCCCcchHHHHH-HHH--HHHHHC-CCcEEEEEccc--------c--------CcccceE
Confidence 45555555544 77999999999999999972 221 232222 36888889987 3 7889999
Q ss_pred EEEecCCCCcccc
Q 004888 207 SVFLSPDLKPLMG 219 (725)
Q Consensus 207 ~vfl~pdG~~i~~ 219 (725)
++|+. +|+.+-.
T Consensus 66 fv~~~-~g~~i~r 77 (204)
T PTZ00062 66 FEFYQ-NSQLINS 77 (204)
T ss_pred EEEEE-CCEEEee
Confidence 99995 8888754
No 121
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=97.38 E-value=0.00093 Score=62.41 Aligned_cols=71 Identities=8% Similarity=0.033 Sum_probs=52.4
Q ss_pred HHHHHHHhhcCCcEEEEEec--cCCh---hhHhhhhhccCCHHHHHHHhcCcEEEEEcCC-----CCcchHHHHHHHHHH
Q 004888 128 EEAFAEARKRDVPIFLSIGY--STCH---WCHVMEVESFEDEGVAKLLNDWFVSIKVDRE-----ERPDVDKVYMTYVQA 197 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~--~wC~---~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~e-----e~pd~~~~y~~~~q~ 197 (725)
+.-|...-++++.+||.|++ +||. -|+.+.. +.++.- ...+..+||.+ ++.++.+.|
T Consensus 8 ~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~------e~~~aa-~~v~lakVd~~d~~~~~~~~L~~~y------ 74 (116)
T cd03007 8 TVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAE------SSASAT-DDLLVAEVGIKDYGEKLNMELGERY------ 74 (116)
T ss_pred hhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHH------HHHhhc-CceEEEEEecccccchhhHHHHHHh------
Confidence 55677788899999999999 8888 7888773 333322 23788899994 345555555
Q ss_pred hcCCC--CcCcEEEecCC
Q 004888 198 LYGGG--GWPLSVFLSPD 213 (725)
Q Consensus 198 ~~g~~--G~P~~vfl~pd 213 (725)
++. |+||+.|+...
T Consensus 75 --~I~~~gyPTl~lF~~g 90 (116)
T cd03007 75 --KLDKESYPVIYLFHGG 90 (116)
T ss_pred --CCCcCCCCEEEEEeCC
Confidence 888 99999988753
No 122
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=97.37 E-value=0.0047 Score=62.48 Aligned_cols=45 Identities=24% Similarity=0.316 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceee
Q 004888 379 LYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 425 (725)
Q Consensus 379 LyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~Ggfys 425 (725)
-..|++.+.++++||++|+|+.|+++|+++++.+.-. ..+||+-+
T Consensus 29 amaQG~a~s~l~RAy~~t~d~~Yl~aA~~al~~f~~~--~~~GG~~~ 73 (189)
T PF06662_consen 29 AMAQGQAISVLARAYQLTGDEKYLDAAKKALNSFKVP--VEEGGVLA 73 (189)
T ss_pred HHHHHHHHHHHHHHHHhHCCHHHHHHHHHHHHHhcCh--HhhCCeeE
Confidence 3469999999999999999999999999999987642 34688865
No 123
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=97.30 E-value=0.065 Score=60.71 Aligned_cols=315 Identities=19% Similarity=0.209 Sum_probs=146.4
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceee----eccCCCccccc--cccc
Q 004888 367 DERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS----AEDADSAETEG--ATRK 440 (725)
Q Consensus 367 D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~Ggfys----a~DADs~~~~~--~~~~ 440 (725)
...|.+-.| -.|--++.+++-.-.+|+||.|++.|.++.+|.++++.++.|.||| .+|=|....+| .|..
T Consensus 60 g~~~~iSNf----AsQQN~lR~L~~LS~lTgd~~Y~q~A~~~~~yfldh~~D~~GL~~WGGHrFi~L~tl~~eGP~~K~~ 135 (557)
T PF06917_consen 60 GRDAPISNF----ASQQNFLRTLVGLSNLTGDPKYQQRAQEIIRYFLDHFVDDSGLFYWGGHRFINLDTLQIEGPENKNM 135 (557)
T ss_dssp S-EEEEE-G----GG-HHHHHHHHHHHHHH--THHHHHHHHHHHHHHHHSB-TTS-BS-STT-EEETTT--EE-SSTT--
T ss_pred CCccccccH----HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhccCCCcceeecCceeEecccCCccCcchhhh
Confidence 344544443 3577789999999999999999999999999999999999998988 44544333322 2222
Q ss_pred c-CcceEEechHHHHHHhhhh-HHHHHHHhc----------ccCCCCcCCC-CCCCC----CCC--CCCcceeeccC---
Q 004888 441 K-EGAFYVWTSKEVEDILGEH-AILFKEHYY----------LKPTGNCDLS-RMSDP----HNE--FKGKNVLIELN--- 498 (725)
Q Consensus 441 ~-EGayY~wt~~Ei~~~lg~~-~~l~~~~y~----------l~~~Gn~e~~-~~~dp----~~~--f~g~nvL~~~~--- 498 (725)
+ |=++-.=-++=+.++-++. ...++..|+ +...|.+... ..-|| ..+ |+++..-.++.
T Consensus 136 VHELKhh~PyY~lm~~vdp~aT~rfi~afWnAHV~DW~~Ld~~RHG~Y~~~~~~vd~~~~p~lppf~~tkGLTFvNaG~D 215 (557)
T PF06917_consen 136 VHELKHHYPYYELMYEVDPEATRRFIKAFWNAHVEDWQSLDMSRHGDYGKPHDVVDPSKWPGLPPFFETKGLTFVNAGND 215 (557)
T ss_dssp SB--SS----HHHHHHH-HHHHHHHHHHHHHHHEEETTTTEE-S-B-TT----SGGGS------TTEEESS---HHHHHH
T ss_pred HHHHhhcCcHHHHHHhcCHHHHHHHHHHHHHHHhhhhhhccccccCccCCCCCCcChhhccCCCcchhccCceeeecCcH
Confidence 1 2222111112223333332 233333332 2455543210 01111 111 12221111110
Q ss_pred ---CchHHHHhcCCCHHHHHHHHHHHHHHHHhhhc--------------cCCCCCCCcchhhhcHHHH------------
Q 004888 499 ---DSSASASKLGMPLEKYLNILGECRRKLFDVRS--------------KRPRPHLDDKVIVSWNGLV------------ 549 (725)
Q Consensus 499 ---~~~~~a~~~g~~~e~~~~~l~~~r~kL~~~R~--------------~R~~P~lDdKiitsWNal~------------ 549 (725)
+..-+++..| .+.....-+...++-...|. +|. |.-||+---||=|=-
T Consensus 216 LiYaA~~l~~~~g--d~~a~~Wak~L~~QYVlaR~PeTG~~vYQFssp~kr~-~p~dd~~T~S~~GDRAqRQFGPEfG~i 292 (557)
T PF06917_consen 216 LIYAASMLAKYDG--DEGALAWAKHLYRQYVLARHPETGLPVYQFSSPLKRE-PPADDNDTQSWYGDRAQRQFGPEFGDI 292 (557)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHTTTTS-TTT----S-SEEE---S---S-TT---GGG--HHHHHHHHHH-TT
T ss_pred HHHHHHHHHhccC--chHHHHHHHHHHHHhhhccCCCCCCceeeecCccccC-CCccccccccchhhHHHhhhccccchh
Confidence 0011222222 01111111122223333443 455 444665444443211
Q ss_pred --------------H-----HHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecC
Q 004888 550 --------------I-----SSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN 610 (725)
Q Consensus 550 --------------I-----~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~ 610 (725)
| .+..+.++.+|..+ ++.++.+.+....-.+..||++++.+.-.+.+
T Consensus 293 A~EanvLFk~d~~~i~~dn~La~l~l~~~lG~~~--------------~~~l~W~i~gL~a~~~yAYd~~~N~~~PM~~d 358 (557)
T PF06917_consen 293 AREANVLFKGDPRPIVQDNPLAQLELARQLGQDD--------------KEMLTWAIDGLKAYYRYAYDEENNEIRPMWND 358 (557)
T ss_dssp --GGGEE-TTHHHHHHTHHHHHHHHHHHHTGGGG--------------HHHHHHHHHHHHHHHHHHEETTTTEE--EETT
T ss_pred HhhhhheeccCCCceeecCHHHHHHHHHHhCCch--------------HHHHHHHHHHHHHHHHHhhccCCCceeecccC
Confidence 0 13455566766633 78999999988888889999999998877777
Q ss_pred CCCCC-----------------CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCc
Q 004888 611 GPSKA-----------------PGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPS 673 (725)
Q Consensus 611 g~~~~-----------------~~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~ 673 (725)
|+... .+++-+-. ....++..|.+++|+.....+..++.. |= =|.+-......+.
T Consensus 359 G~dltgy~l~RdGYYG~KGtvl~~~p~~~~-yll~~vra~~~s~D~~Lw~~~~~m~~~----~g---LGdig~~~~~~~~ 430 (557)
T PF06917_consen 359 GQDLTGYRLPRDGYYGKKGTVLKPFPADPD-YLLPYVRAYRLSRDPELWDLARTMAHH----FG---LGDIGNAAGKEPR 430 (557)
T ss_dssp SEB-TTEE-SS-BTTB-TT-EE--EE--HH-HHHHHHHHHHHS--HHHHHHHHHHHHH----TT----EE-TTBTTBS-E
T ss_pred CcCCcCcccccccccCCCCCeeccccCchh-HhHHHHHHHHcCCCHHHHHHHHHHHhh----cC---cccccCccccccc
Confidence 64311 12222223 355899999999999988888877753 31 1222221211111
Q ss_pred cccccccCCCCCCCChHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 004888 674 VLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLY 721 (725)
Q Consensus 674 ~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~t~~~~~~~y~~~A~~~l~ 721 (725)
+ +....+....+..++++|++.|++ +.|++.|+++=.
T Consensus 431 ~--------~~~~~~~sp~~L~allEL~~atq~---~~~l~lA~~~g~ 467 (557)
T PF06917_consen 431 V--------NMQTDNASPYLLFALLELYQATQD---ARYLELADQVGE 467 (557)
T ss_dssp E---------TT-----HHHHHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred c--------ccCCCCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHH
Confidence 1 222334446788999999999997 789999887644
No 124
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=97.29 E-value=0.0022 Score=63.02 Aligned_cols=81 Identities=17% Similarity=0.277 Sum_probs=50.5
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHh-cCcEEEEEcCCC-------CcchHHHHHHH--------------
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREE-------RPDVDKVYMTY-------------- 194 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln-~~FV~VkvD~ee-------~pd~~~~y~~~-------------- 194 (725)
.+|+++|.|++.||+.|..+..+ + .++.+.+. +++..|-|..+. .++..+.|.+.
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~-l--~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~ 100 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDR-L--NRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQE 100 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHH-H--HHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchH
Confidence 68999999999999999865432 2 23444443 344444444322 23222233211
Q ss_pred HHHhcCCCCcCcEEEecCCCCccccc
Q 004888 195 VQALYGGGGWPLSVFLSPDLKPLMGG 220 (725)
Q Consensus 195 ~q~~~g~~G~P~~vfl~pdG~~i~~~ 220 (725)
....+|+.++|.++++|++|++++.+
T Consensus 101 ~~~~~~v~~~P~~~lid~~G~v~~~~ 126 (171)
T cd02969 101 VAKAYGAACTPDFFLFDPDGKLVYRG 126 (171)
T ss_pred HHHHcCCCcCCcEEEECCCCeEEEee
Confidence 11235788999999999999988654
No 125
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.26 E-value=0.0006 Score=71.29 Aligned_cols=22 Identities=9% Similarity=0.075 Sum_probs=18.9
Q ss_pred hhcCCcEEEEEeccCChhhHhh
Q 004888 135 RKRDVPIFLSIGYSTCHWCHVM 156 (725)
Q Consensus 135 k~e~KpI~l~~g~~wC~~C~~M 156 (725)
.-.||+|+|.|+++||++|...
T Consensus 96 d~kGK~vvl~FwAswCp~c~~e 117 (236)
T PLN02399 96 KFKGKVLLIVNVASKCGLTSSN 117 (236)
T ss_pred HhCCCeEEEEEEcCCCcchHHH
Confidence 3358999999999999999763
No 126
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.21 E-value=0.00066 Score=68.85 Aligned_cols=66 Identities=9% Similarity=0.067 Sum_probs=46.5
Q ss_pred CCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCcc
Q 004888 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (725)
Q Consensus 138 ~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i 217 (725)
+++|+|+|+++||+.|+.|.. .++ ++++... ....||||++.. ... +++.+.||++|+ .+|+.+
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~-~l~--~LA~k~~-~vkFvkI~ad~~---~~~--------~~i~~lPTlliy-k~G~~v 165 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQ-HLS--ELARKFP-DTKFVKIISTQC---IPN--------YPDKNLPTILVY-RNGDIV 165 (192)
T ss_pred CCEEEEEEECCCCchHHHHHH-HHH--HHHHHCC-CCEEEEEEhHHh---Hhh--------CCCCCCCEEEEE-ECCEEE
Confidence 469999999999999999973 332 3333332 456778887642 122 388899999988 678877
Q ss_pred cc
Q 004888 218 MG 219 (725)
Q Consensus 218 ~~ 219 (725)
..
T Consensus 166 ~~ 167 (192)
T cd02988 166 KQ 167 (192)
T ss_pred EE
Confidence 43
No 127
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.18 E-value=0.032 Score=63.10 Aligned_cols=228 Identities=20% Similarity=0.208 Sum_probs=147.9
Q ss_pred cHHHHHHHHHHHHHHHhCCCcccCC--CeEEEE-ecCCCCC---CCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHH
Q 004888 334 ASEGQKMVLFTLQCMAKGGIHDHVG--GGFHRY-SVDERWH---VPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRD 407 (725)
Q Consensus 334 ~~~~~~~~~~TL~~ma~gGi~D~v~--GGF~RY-s~D~~W~---vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~ 407 (725)
++...+-+..+.+.++. +.|..| ||+++- --...|. .-|| ||--+-|+..-..+|++||+...++++.+
T Consensus 84 dp~Lekr~D~vi~~~a~--~QdedGYl~~~~q~~~pe~Rw~nlr~~He---lY~aghLieg~va~~qaTGkr~lldV~~r 158 (589)
T COG3533 84 DPELEKRIDEVVEELAR--AQDEDGYLGGWFQADFPEERWGNLRPNHE---LYCAGHLIEGGVAAHQATGKRRLLDVVCR 158 (589)
T ss_pred CHHHHHHHHHHHHHHHH--hhccCCcccceeeccCchhhhhccccchH---HHHhHHHHhhhhHHHHhhCcchHHHHHHH
Confidence 46777788888888877 777643 455542 2345564 3455 99989999999999999999999999999
Q ss_pred HHHHHHHhccCCCCceeeeccCCCccccccccccCcceEEechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCC
Q 004888 408 ILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNE 487 (725)
Q Consensus 408 ~~~fl~~~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~lg~~~~l~~~~y~l~~~Gn~e~~~~~dp~~~ 487 (725)
-.+|+.+-+ .|+-+ . ..|.|
T Consensus 159 lADhi~tvf-gp~~~--------------q----------------------------------~~g~~----------- 178 (589)
T COG3533 159 LADHIATVF-GPEED--------------Q----------------------------------VPGYC----------- 178 (589)
T ss_pred HHHhhhhhc-Ccccc--------------c----------------------------------ccccc-----------
Confidence 999998755 22100 0 01221
Q ss_pred CCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCCCCCCcchhhhcHHHHHHHHHHHHHHhhhhhhhh
Q 004888 488 FKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESA 567 (725)
Q Consensus 488 f~g~nvL~~~~~~~~~a~~~g~~~e~~~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal~I~aLa~A~~vl~d~~~~~ 567 (725)
.++-+-.||++.|+++|+
T Consensus 179 ---------------------------------------------------------gH~eielAl~~Ly~~Tg~----- 196 (589)
T COG3533 179 ---------------------------------------------------------GHPEIELALAELYRLTGD----- 196 (589)
T ss_pred ---------------------------------------------------------CCCchhHHHHHHHHHhcC-----
Confidence 112344588999999998
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004888 568 MFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIE 647 (725)
Q Consensus 568 ~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~ 647 (725)
++||+.|+...+ ....+| . -.+|.....++.--..+++.|+.+||+.+||+.+...+..
T Consensus 197 -----------~rYL~LA~~Fi~---~rg~~P-----~--~~rg~e~~~gHAvr~iyl~~G~A~l~~~~gDds~r~~~~~ 255 (589)
T COG3533 197 -----------QRYLDLARRFIH---QRGVEP-----L--AQRGDELEGGHAVRQIYLYIGAADLAEETGDDSLRQAAEF 255 (589)
T ss_pred -----------hHHHHHHHHHHH---HhccCh-----h--hcCchhhhhhhHHHHHHHhhhHHHHHHHhCCHHHHHHHHH
Confidence 899999886543 333333 0 0122222245556678999999999999999999999999
Q ss_pred HHHHHHHH-ccccCCCcccccCCCCCccccccccCCCCCC----CChHHHHHHHHHHHHHh-hCCCCchHHHHHHHHHH
Q 004888 648 LQNTQDEL-FLDREGGGYFNTTGEDPSVLLRVKEDHDGAE----PSGNSVSVINLVRLASI-VAGSKSDYYRQNAEHSL 720 (725)
Q Consensus 648 L~~~~~~~-F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~----PS~Nsv~a~~LlrL~~~-t~~~~~~~y~~~A~~~l 720 (725)
+|+.+-++ .|= . ||-= .+.++ + ..|... -++-+.+..||+.+++- ++-..+..|.+..|+.|
T Consensus 256 lW~~~t~k~~Yi-t-GG~g-~~~E~--F------~~~ydlpn~~~yAEtCas~~l~~~a~Rml~~~~d~~yaDvmErAL 323 (589)
T COG3533 256 LWQNVTTRQSYI-T-GGNG-SSNEH--F------GPDYDLPNRTAYAETCASYNLLKLARRMLGWGPDSQYADVMERAL 323 (589)
T ss_pred HHHHhhhhheEE-e-cccC-Ccccc--C------CccccCcccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 99887554 221 1 1110 11111 0 112222 34556788888888754 33323467888777765
No 128
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=97.14 E-value=0.075 Score=59.07 Aligned_cols=135 Identities=9% Similarity=-0.084 Sum_probs=87.5
Q ss_pred HHHHHHHHHHh-hhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe------c-----CCCCCCCC
Q 004888 550 ISSFARASKIL-KSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF------R-----NGPSKAPG 617 (725)
Q Consensus 550 I~aLa~A~~vl-~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~------~-----~g~~~~~~ 617 (725)
+++|+.+++.. ++ +.+++.++++.+|+..++.+...+..+... . .+.....+
T Consensus 178 ~~~L~~~~~~~~~~----------------~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 241 (382)
T cd04793 178 LALLALAKERGIRV----------------DGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDA 241 (382)
T ss_pred HHHHHHHHHcCCCc----------------CChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCC
Confidence 67788888765 43 679999999999998877654333222110 0 01112234
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCChHHHHHHHH
Q 004888 618 FLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINL 697 (725)
Q Consensus 618 ~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~L 697 (725)
+-.+-+=.+.+++.++++++|+.+.+.|.++.+....... ..+ . ..+...-.|.+=.+..|
T Consensus 242 wChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~-----~------------~~~~~lChG~~G~~~~l 302 (382)
T cd04793 242 WCYGTPGIARALQLAGKALDDQKLQEAAEKILKAALKDKK--QLS-----K------------LISPTLCHGLAGLLFIF 302 (382)
T ss_pred CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhChh--hhc-----c------------CCCCCcCccHHHHHHHH
Confidence 4445555777889999999999999999998777654321 000 0 01112234556567888
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHH
Q 004888 698 VRLASIVAGSKSDYYRQNAEHSLYL 722 (725)
Q Consensus 698 lrL~~~t~~~~~~~y~~~A~~~l~~ 722 (725)
++++..+++ +.|.+.|++++..
T Consensus 303 ~~~~~~~~~---~~~~~~a~~~~~~ 324 (382)
T cd04793 303 YLLYKDTNT---NEFKSALEYLLNQ 324 (382)
T ss_pred HHHHHHhCC---cHHHHHHHHHHHH
Confidence 999999997 5788888877654
No 129
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.14 E-value=0.00058 Score=52.73 Aligned_cols=63 Identities=27% Similarity=0.442 Sum_probs=45.9
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCC
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pd 213 (725)
++.|+.+||++|+.+.. .+.+- +..+.++..+.+|.++.++.... ....+..+.|++++.+++
T Consensus 1 l~~~~~~~c~~c~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRP-VLAEL---ALLNKGVKFEAVDVDEDPALEKE-----LKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhh-HHHHH---HhhCCCcEEEEEEcCCChHHhhH-----HHhCCCccccEEEEEeCC
Confidence 47789999999999974 22222 45677899999999887655432 112367799999999887
No 130
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=97.11 E-value=0.0032 Score=60.40 Aligned_cols=88 Identities=14% Similarity=0.166 Sum_probs=68.8
Q ss_pred hHHHHHHH----hhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHH---------
Q 004888 127 GEEAFAEA----RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMT--------- 193 (725)
Q Consensus 127 ~~eAl~~A----k~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~--------- 193 (725)
+++|++.| |++.||++|+.+.+-=.-|...=++++.+++|.+++|+|||.-=-|++.. +..+.+..
T Consensus 6 ~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~-~~~~~fl~~~~~~~g~~ 84 (136)
T cd02990 6 LEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKE-SNKARFLSSCTRHFGSV 84 (136)
T ss_pred HHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccch-hhhhHHHHhhhhhhhHH
Confidence 48999999 99999999999999988888888889999999999999999999998753 22111111
Q ss_pred HHHHh--cCCCCcCcEEEecCCCC
Q 004888 194 YVQAL--YGGGGWPLSVFLSPDLK 215 (725)
Q Consensus 194 ~~q~~--~g~~G~P~~vfl~pdG~ 215 (725)
+.|.. .+..-+|...++.+..+
T Consensus 85 a~~~~~~~~~~~fP~~avI~~~~~ 108 (136)
T cd02990 85 AAQTIRNIKTDQLPAILIIMGKRS 108 (136)
T ss_pred HHHHHHhcCcCCCCeEEEEEecCC
Confidence 11222 24678999999987764
No 131
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.11 E-value=0.002 Score=65.65 Aligned_cols=19 Identities=11% Similarity=0.275 Sum_probs=17.7
Q ss_pred cCCcEEEEEeccCChhhHh
Q 004888 137 RDVPIFLSIGYSTCHWCHV 155 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~ 155 (725)
.||+|+|.|+++||++|+.
T Consensus 38 kGkvvlv~fwAswC~~C~~ 56 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKK 56 (199)
T ss_pred CCCEEEEEEECCCCCChHH
Confidence 5899999999999999985
No 132
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=96.99 E-value=0.016 Score=62.78 Aligned_cols=122 Identities=20% Similarity=0.258 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc
Q 004888 579 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLD 658 (725)
Q Consensus 579 ~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D 658 (725)
++|++.|+++++++..+. ..+.|+|+|.... + .+-.+|.--.+.--++.+.+.+|+++|.+.+..-+....++.-|
T Consensus 98 ~~Yl~~a~~~a~~l~~~~-Rt~eG~f~H~~~~--p-~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~QF~~~~~~l~D 173 (357)
T COG4225 98 PRYLEAAIKLASWLVHEP-RTKEGGFQHKVKY--P-HQMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQFSLHEKYLRD 173 (357)
T ss_pred HHHHHHHHHHHHHHhhCc-ccCCCccccccCc--h-hHhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHccC
Confidence 899999999999999888 5556889986431 1 11222223334445678889999999999999999999999999
Q ss_pred cCCCcccccCCCCCccccccccCCCCCCC----ChHHHHHHHHHHHHHhhCCC
Q 004888 659 REGGGYFNTTGEDPSVLLRVKEDHDGAEP----SGNSVSVINLVRLASIVAGS 707 (725)
Q Consensus 659 ~~~Ggyf~t~~~~~~~~~r~k~~~D~a~P----S~Nsv~a~~LlrL~~~t~~~ 707 (725)
+++|-||..=+++.+- ++....-| +| -+|+=.+.+|.++=+++...
T Consensus 174 p~TGL~YH~wd~~~~~--~w~~~~sG-~~~fWaRg~gW~~mal~d~le~lp~~ 223 (357)
T COG4225 174 PETGLYYHGWDEDGTM--PWANNESG-EPAFWARGNGWYAMALADLLELLPED 223 (357)
T ss_pred CCcCceEEeeccCCCC--ccccccCC-CceeeecccchHHHHHHHHHHhCCCC
Confidence 9999988643333211 11111111 12 35666777777777777643
No 133
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=96.95 E-value=0.0027 Score=59.65 Aligned_cols=79 Identities=18% Similarity=0.190 Sum_probs=47.0
Q ss_pred cCCcEEEEEe-ccCChhhHhhhhhccCCHHHHHHHh-cCcEEEEEcCCCCcchHHHHHHH--------------HHHhcC
Q 004888 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTY--------------VQALYG 200 (725)
Q Consensus 137 e~KpI~l~~g-~~wC~~C~~Me~e~f~d~eVa~~ln-~~FV~VkvD~ee~pd~~~~y~~~--------------~q~~~g 200 (725)
.||+++|.|+ +.||++|..+-.+ ++ ++.+.+. +++..|-|..+. ++..+.|.+. ....+|
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~-l~--~~~~~~~~~~~~vv~is~d~-~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 97 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACD-FR--DLYEEFKALGAVVIGVSPDS-VESHAKFAEKYGLPFPLLSDPDGKLAKAYG 97 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHH-HH--HHHHHHHHCCCEEEEEcCCC-HHHHHHHHHHhCCCceEEECCccHHHHHhC
Confidence 4899999998 6899999976432 22 2333333 345555555442 2222233211 111235
Q ss_pred CCCc---------CcEEEecCCCCcccc
Q 004888 201 GGGW---------PLSVFLSPDLKPLMG 219 (725)
Q Consensus 201 ~~G~---------P~~vfl~pdG~~i~~ 219 (725)
+..+ |+++++|++|++...
T Consensus 98 v~~~~~~~~~~~~p~~~lid~~G~v~~~ 125 (140)
T cd03017 98 VWGEKKKKYMGIERSTFLIDPDGKIVKV 125 (140)
T ss_pred CccccccccCCcceeEEEECCCCEEEEE
Confidence 5555 899999999998865
No 134
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0017 Score=73.89 Aligned_cols=77 Identities=21% Similarity=0.297 Sum_probs=57.9
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc---CcEEEEEcCCCCcchHHHHHHHHHHhcCCCCc
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~---~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~ 204 (725)
.+-++..-..+.-|||.|||+||.-|+.+.-+- .+-+..|.+ .--..|||.++..++...| ++.|+
T Consensus 32 ~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey---~kAA~~Lke~~s~i~LakVDat~~~~~~~~y--------~v~gy 100 (493)
T KOG0190|consen 32 KDNFKETINGHEFVLVEFYAPWCGHCKALAPEY---EKAATELKEEGSPVKLAKVDATEESDLASKY--------EVRGY 100 (493)
T ss_pred cccHHHHhccCceEEEEEEchhhhhhhhhCcHH---HHHHHHhhccCCCceeEEeecchhhhhHhhh--------cCCCC
Confidence 445667778889999999999999999998432 122344444 4557899999887777776 89999
Q ss_pred CcEEEecCCCCc
Q 004888 205 PLSVFLSPDLKP 216 (725)
Q Consensus 205 P~~vfl~pdG~~ 216 (725)
||.-|+ -+|+.
T Consensus 101 PTlkiF-rnG~~ 111 (493)
T KOG0190|consen 101 PTLKIF-RNGRS 111 (493)
T ss_pred CeEEEE-ecCCc
Confidence 999877 55664
No 135
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=96.82 E-value=0.0041 Score=59.92 Aligned_cols=86 Identities=10% Similarity=0.097 Sum_probs=47.7
Q ss_pred cCCcEEEEEecc-CChhhHhhhhhccCCHHHHHHHh-cCcEEEEEcCCCCcchHHHHHHHH--------------HHhcC
Q 004888 137 RDVPIFLSIGYS-TCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTYV--------------QALYG 200 (725)
Q Consensus 137 e~KpI~l~~g~~-wC~~C~~Me~e~f~d~eVa~~ln-~~FV~VkvD~ee~pd~~~~y~~~~--------------q~~~g 200 (725)
.+|+++|.|++. ||.+|...-. .+ .++.+.++ +++..|-|..+....+ +.|.+.. ...+|
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~-~l--~~~~~~~~~~~v~vi~Is~d~~~~~-~~~~~~~~~~~~~l~D~~~~~~~~~g 104 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQAC-GL--RDNMDELKKAGVVVLGISTDKPEKL-SRFAEKELLNFTLLSDEDHQVAEQFG 104 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHH-HH--HHHHHHHHHCCCEEEEEcCCCHHHH-HHHHHHhCCCCeEEECCCchHHHHhC
Confidence 579999999875 7889987532 22 23333343 3466666655432222 2332111 11124
Q ss_pred CCC------------cCcEEEecCCCCccccc-cccCCC
Q 004888 201 GGG------------WPLSVFLSPDLKPLMGG-TYFPPE 226 (725)
Q Consensus 201 ~~G------------~P~~vfl~pdG~~i~~~-tY~p~~ 226 (725)
+.+ .|+++++|++|+++..- +|.|++
T Consensus 105 v~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~ 143 (154)
T PRK09437 105 VWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSN 143 (154)
T ss_pred CCcccccccccccCcceEEEEECCCCEEEEEEcCCCcch
Confidence 322 27789999999988652 455543
No 136
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0018 Score=73.85 Aligned_cols=96 Identities=19% Similarity=0.228 Sum_probs=68.2
Q ss_pred cccccCCChhhhcccCCCCcccc------chHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc--Cc
Q 004888 103 NRLAAEHSPYLLQHAHNPVDWFA------WGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WF 174 (725)
Q Consensus 103 NrL~~e~spyl~~ha~~~V~W~~------~~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~--~F 174 (725)
..|...-+||+.- .+-|=+|.. -++.--+.+-.++|-|||.|||+||+-|+.++... .++++.+.+ +-
T Consensus 344 ~~l~Gk~~p~~kS-qpiPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~---eeLAe~~~~~~~v 419 (493)
T KOG0190|consen 344 DFLDGKVKPHLKS-QPIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIY---EELAEKYKDDENV 419 (493)
T ss_pred HHhcCcccccccc-CCCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHH---HHHHHHhcCCCCc
Confidence 4567777888875 344445541 12444567889999999999999999999998422 355555553 68
Q ss_pred EEEEEcCCCC--cchHHHHHHHHHHhcCCCCcCcEEEecCCC
Q 004888 175 VSIKVDREER--PDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (725)
Q Consensus 175 V~VkvD~ee~--pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG 214 (725)
|..|+|.+.+ |.+ .+.|+||+.|+-..+
T Consensus 420 viAKmDaTaNd~~~~------------~~~~fPTI~~~pag~ 449 (493)
T KOG0190|consen 420 VIAKMDATANDVPSL------------KVDGFPTILFFPAGH 449 (493)
T ss_pred EEEEeccccccCccc------------cccccceEEEecCCC
Confidence 9999999754 332 356899999986655
No 137
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=96.78 E-value=0.0037 Score=53.46 Aligned_cols=66 Identities=14% Similarity=0.254 Sum_probs=40.3
Q ss_pred EEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCcccc
Q 004888 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 143 l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~~ 219 (725)
+.|+++||++|+.+.. .+..-. ++..|..+.||.++.+.. ..+++...+|..++|+.+ + +|+.+.+
T Consensus 2 ~~f~~~~Cp~C~~~~~-~L~~~~----i~~~~~~~~v~~~~~~~~---~~~~l~~~~g~~~vP~v~-i--~g~~igg 67 (84)
T TIGR02180 2 VVFSKSYCPYCKKAKE-ILAKLN----VKPAYEVVELDQLSNGSE---IQDYLEEITGQRTVPNIF-I--NGKFIGG 67 (84)
T ss_pred EEEECCCChhHHHHHH-HHHHcC----CCCCCEEEEeeCCCChHH---HHHHHHHHhCCCCCCeEE-E--CCEEEcC
Confidence 5789999999999873 222111 222377888887654322 222334446888999975 3 4666543
No 138
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=96.77 E-value=0.0011 Score=63.05 Aligned_cols=81 Identities=26% Similarity=0.352 Sum_probs=46.4
Q ss_pred HHHHHHHhhcCCc-EEEEEeccCChhhHhhhhhccCCHHHHHHHhcC-cEEEEE-cCCCCcchHHHHHHHHHHhcCCCCc
Q 004888 128 EEAFAEARKRDVP-IFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKV-DREERPDVDKVYMTYVQALYGGGGW 204 (725)
Q Consensus 128 ~eAl~~Ak~e~Kp-I~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~-FV~Vkv-D~ee~pd~~~~y~~~~q~~~g~~G~ 204 (725)
++..++.+.-.|+ -++-|+.+||+.|...= |-+.++...+ -+.|++ .+++++++-..|.. .|....
T Consensus 30 ~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~v------P~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-----~g~~~I 98 (129)
T PF14595_consen 30 EEQIEKLKSIQKPYNILVITETWCGDCARNV------PVLAKIAEANPNIEVRIILRDENKELMDQYLT-----NGGRSI 98 (129)
T ss_dssp HHHHHHHHT--S-EEEEEE--TT-HHHHHHH------HHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT------SS--S
T ss_pred HHHHHHHHhcCCCcEEEEEECCCchhHHHHH------HHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-----CCCeec
Confidence 5566666666665 56778999999999865 6777776655 566663 45555655444421 467789
Q ss_pred CcEEEecCCCCcccc
Q 004888 205 PLSVFLSPDLKPLMG 219 (725)
Q Consensus 205 P~~vfl~pdG~~i~~ 219 (725)
|++||+|.+|+++..
T Consensus 99 P~~I~~d~~~~~lg~ 113 (129)
T PF14595_consen 99 PTFIFLDKDGKELGR 113 (129)
T ss_dssp SEEEEE-TT--EEEE
T ss_pred CEEEEEcCCCCEeEE
Confidence 999999999999844
No 139
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.0023 Score=71.35 Aligned_cols=75 Identities=25% Similarity=0.379 Sum_probs=59.2
Q ss_pred HHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEec
Q 004888 132 AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 211 (725)
Q Consensus 132 ~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~ 211 (725)
......+++.+|.|+++||..|+.+.. ++. +++..+...-....||.++.+++-+.| ++.|+|+.+++.
T Consensus 41 ~~~~~~~~~~~v~fyapwc~~c~~l~~-~~~--~~~~~l~~~~~~~~vd~~~~~~~~~~y--------~i~gfPtl~~f~ 109 (383)
T KOG0191|consen 41 DFLLKDDSPWLVEFYAPWCGHCKKLAP-TYK--KLAKALKGKVKIGAVDCDEHKDLCEKY--------GIQGFPTLKVFR 109 (383)
T ss_pred HHhhccCCceEEEEECCCCcchhhhch-HHH--HHHHHhcCceEEEEeCchhhHHHHHhc--------CCccCcEEEEEc
Confidence 345567889999999999999999985 444 677777764555668999888887776 899999999999
Q ss_pred CCCCcc
Q 004888 212 PDLKPL 217 (725)
Q Consensus 212 pdG~~i 217 (725)
++.+++
T Consensus 110 ~~~~~~ 115 (383)
T KOG0191|consen 110 PGKKPI 115 (383)
T ss_pred CCCcee
Confidence 983333
No 140
>PLN02412 probable glutathione peroxidase
Probab=96.71 E-value=0.0045 Score=61.14 Aligned_cols=19 Identities=11% Similarity=0.146 Sum_probs=17.6
Q ss_pred cCCcEEEEEeccCChhhHh
Q 004888 137 RDVPIFLSIGYSTCHWCHV 155 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~ 155 (725)
.||+|+|.|+++||+.|+.
T Consensus 28 ~gk~vlv~f~a~~C~~c~~ 46 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDS 46 (167)
T ss_pred CCCEEEEEEeCCCCCChHH
Confidence 5799999999999999995
No 141
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=96.66 E-value=0.0068 Score=68.71 Aligned_cols=90 Identities=16% Similarity=0.125 Sum_probs=58.3
Q ss_pred cHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC-CC--Ccch
Q 004888 545 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA-PG--FLDD 621 (725)
Q Consensus 545 WNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~-~~--~leD 621 (725)
-.+.++.+||.|++++++.+. .| -.++|+.|+++.+|..++--. +. ....... .. -...
T Consensus 155 ~~~~~AAalA~As~v~k~~d~--~~--------A~~~L~~A~~~~~~a~~~~~~-----~~---~~~~~~~~~~Y~~~~~ 216 (444)
T PF00759_consen 155 ATAEFAAALAAASRVFKDFDP--AY--------AAQCLKAAKEAYAFAKKNPGV-----YS---DNPQPNGGGFYNSSGY 216 (444)
T ss_dssp HHHHHHHHHHHHHHHHTTTTH--HH--------HHHHHHHHHHHHHHHHHSTTH-----GG---GTSTCTTTTTSHCS-S
T ss_pred HHHHHHHHHHHHHHhcccCCH--HH--------HHHHHHHHHHHHHHHHhCCCc-----cc---CCcccccCCcccCCCc
Confidence 357788999999999986221 11 257899999999998775411 10 1110101 10 1223
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004888 622 YAFLISGLLDLYEFGSGTKWLVWAIELQNTQ 652 (725)
Q Consensus 622 yA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~ 652 (725)
.-.++.|.++||++||+.+|++.|.+....+
T Consensus 217 ~De~~wAA~~Ly~aTg~~~Y~~~a~~~~~~~ 247 (444)
T PF00759_consen 217 EDELAWAAAELYRATGDESYLDYAKEYYDDL 247 (444)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHCCTS
T ss_pred ccHHHHHHHHHHHhcCcHHHHHHHHHhHHhh
Confidence 3457889999999999999999998877444
No 142
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.64 E-value=0.1 Score=59.31 Aligned_cols=123 Identities=19% Similarity=0.192 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 004888 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 626 (725)
Q Consensus 547 al~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~leDyA~li 626 (725)
+.+|.|+..+++++|. ...++++.++|++|..-| +++.+.. ....+ +-.+-
T Consensus 134 ghLieg~va~~qaTGk----------------r~lldV~~rlADhi~tvf-gp~~~q~--------~g~~g----H~eie 184 (589)
T COG3533 134 GHLIEGGVAAHQATGK----------------RRLLDVVCRLADHIATVF-GPEEDQV--------PGYCG----HPEIE 184 (589)
T ss_pred HHHHhhhhHHHHhhCc----------------chHHHHHHHHHHhhhhhc-Ccccccc--------ccccC----CCchh
Confidence 6789999999999996 689999999999998877 3332211 11122 23456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCChHHH----HHHHHHHHHH
Q 004888 627 SGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSV----SVINLVRLAS 702 (725)
Q Consensus 627 ~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv----~a~~LlrL~~ 702 (725)
.||.+||++|||++||+.|+..... +-.++ +. ... .+ .+ -+-++ .+..+-+|+.
T Consensus 185 lAl~~Ly~~Tg~~rYL~LA~~Fi~~---rg~~P-----~~-~rg--------~e-~~----~gHAvr~iyl~~G~A~l~~ 242 (589)
T COG3533 185 LALAELYRLTGDQRYLDLARRFIHQ---RGVEP-----LA-QRG--------DE-LE----GGHAVRQIYLYIGAADLAE 242 (589)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH---hccCh-----hh-cCc--------hh-hh----hhhHHHHHHHhhhHHHHHH
Confidence 7999999999999999999865432 22222 10 000 01 11 22222 6677889999
Q ss_pred hhCCCCchHHHHHHHHHHHHh
Q 004888 703 IVAGSKSDYYRQNAEHSLYLR 723 (725)
Q Consensus 703 ~t~~~~~~~y~~~A~~~l~~~ 723 (725)
++|| +.++..++.+-+.+
T Consensus 243 ~~gD---ds~r~~~~~lW~~~ 260 (589)
T COG3533 243 ETGD---DSLRQAAEFLWQNV 260 (589)
T ss_pred HhCC---HHHHHHHHHHHHHh
Confidence 9997 78999998877654
No 143
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=96.53 E-value=0.0062 Score=58.89 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=19.7
Q ss_pred HHHhhcCCcEEEEEeccCChhhHh
Q 004888 132 AEARKRDVPIFLSIGYSTCHWCHV 155 (725)
Q Consensus 132 ~~Ak~e~KpI~l~~g~~wC~~C~~ 155 (725)
..+.-.||+|+|.|+++||+.|..
T Consensus 16 ~l~~~~Gk~vvv~~~as~C~~c~~ 39 (153)
T TIGR02540 16 SLEKYRGKVSLVVNVASECGFTDQ 39 (153)
T ss_pred cHHHhCCCEEEEEEeCCCCCchhh
Confidence 334446899999999999999975
No 144
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=96.51 E-value=0.0016 Score=68.83 Aligned_cols=79 Identities=24% Similarity=0.387 Sum_probs=56.8
Q ss_pred chHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEE---cCCCCcchHHHHHHHHHHhcCCC
Q 004888 126 WGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKV---DREERPDVDKVYMTYVQALYGGG 202 (725)
Q Consensus 126 ~~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~Vkv---D~ee~pd~~~~y~~~~q~~~g~~ 202 (725)
+.++.+..-|.++ .-||+||++||.-||+++. ++. +|--.|.+-=.|||| |.+.-|.+...+ |+.
T Consensus 32 DLddkFkdnkddd-iW~VdFYAPWC~HCKkLeP-iWd--eVG~elkdig~PikVGKlDaT~f~aiAnef--------giq 99 (468)
T KOG4277|consen 32 DLDDKFKDNKDDD-IWFVDFYAPWCAHCKKLEP-IWD--EVGHELKDIGLPIKVGKLDATRFPAIANEF--------GIQ 99 (468)
T ss_pred hhhHHhhhcccCC-eEEEEeechhhhhcccccc-hhH--HhCcchhhcCCceeecccccccchhhHhhh--------ccC
Confidence 3455555544433 3689999999999999974 443 555556665667775 778788887766 899
Q ss_pred CcCcEEEecCCCCc
Q 004888 203 GWPLSVFLSPDLKP 216 (725)
Q Consensus 203 G~P~~vfl~pdG~~ 216 (725)
|+||+.|+-.+.-.
T Consensus 100 GYPTIk~~kgd~a~ 113 (468)
T KOG4277|consen 100 GYPTIKFFKGDHAI 113 (468)
T ss_pred CCceEEEecCCeee
Confidence 99999999776443
No 145
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=96.49 E-value=0.25 Score=59.53 Aligned_cols=223 Identities=20% Similarity=0.204 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCeEEE----EecC-CCCCCCCCchhHHH-HHHHHHHHHHHHHccCChHHHHHHHHHH
Q 004888 336 EGQKMVLFTLQCMAKGGIHDHVGGGFHR----YSVD-ERWHVPHFEKMLYD-QGQLANVYLDAFSLTKDVFYSYICRDIL 409 (725)
Q Consensus 336 ~~~~~~~~TL~~ma~gGi~D~v~GGF~R----Ys~D-~~W~vPHFEKMLyD-NA~Ll~~ya~Ay~~t~d~~y~~vA~~~~ 409 (725)
-...+|..--+.|+..+|.-...+-..+ +..+ ..|.+------||| -|-++-.|+.-..+||+..|.++|.+++
T Consensus 597 ~~v~~a~~ige~i~~~~I~g~~~~~~~~~~is~~~~g~~~~lsp~g~dlydG~~GI~LF~ayL~~vtgk~~Y~~ia~~~L 676 (963)
T COG4403 597 YFVSIANDIGEHIIKQLIIGVDDFETSLIWISTTFEGQGWSLSPLGNDLYDGSAGIALFFAYLALVTGKDYYKEIAIKAL 676 (963)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCcceEEEEEeeeccceEEeecCCchhhcCcchHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 3344444444445544444433332222 2222 66776444556788 8999999999999999999999999999
Q ss_pred HHHHHhccCCC-----CceeeeccCCCccccccccccCcceEEechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCC
Q 004888 410 DYLRRDMIGPG-----GEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDP 484 (725)
Q Consensus 410 ~fl~~~m~~~~-----Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~lg~~~~l~~~~y~l~~~Gn~e~~~~~dp 484 (725)
.=+.+.+.... |||.. -.|-|| ..--|.+++++.
T Consensus 677 ~~~~~sv~~~~~~~~iga~~G---------------~~g~~y--al~~I~~~~~~~------------------------ 715 (963)
T COG4403 677 QDSRKSVNNNLNPINIGAFTG---------------LSGYFY--ALWKIYSVTRDN------------------------ 715 (963)
T ss_pred HHHHHhhhhccCCcccccccc---------------cchhhh--hhHHHHHhcccH------------------------
Confidence 98888765422 33321 123222 222233333321
Q ss_pred CCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCCCCCCcchhhhcHHHH--HHHHHHHHHHhhh
Q 004888 485 HNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLV--ISSFARASKILKS 562 (725)
Q Consensus 485 ~~~f~g~nvL~~~~~~~~~a~~~g~~~e~~~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal~--I~aLa~A~~vl~d 562 (725)
.|. .+..+.++ .|...-.+-.-| | + -||++ |..|...|+.+.+
T Consensus 716 --------~l~-------------------~~~~~~i~-~le~~v~~~~~~---d-~---i~Gl~g~i~~L~~iYk~~~e 760 (963)
T COG4403 716 --------YLI-------------------QSAENSIR-HLEILVQKSKDP---D-F---INGLAGVICVLVSIYKLTDE 760 (963)
T ss_pred --------HHH-------------------HHHHHHHH-HHHHHHhhccCc---c-h---hhccHHHHHHHHHHHhhccc
Confidence 110 01111111 111111111111 1 1 24444 7788888988765
Q ss_pred hhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHH
Q 004888 563 EAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWL 642 (725)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~leDyA~li~aLL~LYe~Tgd~~yL 642 (725)
+++++.|..+.+.+.+.....+. .+....++..+-+-.|.+|+.+|++||++.++
T Consensus 761 ----------------pk~l~~ais~~~~l~~~~v~~d~---------s~~~l~gfshg~sgi~~tL~~ly~~T~e~~l~ 815 (963)
T COG4403 761 ----------------PKFLELAISLGRILMEKIVGNDS---------SETVLLGFSHGASGIILTLLKLYEATGEESLL 815 (963)
T ss_pred ----------------hHHHHHHHHHHHHHHHHhhcccc---------ccceecccccchHHHHHHHHHHHHhcCcHHHH
Confidence 89999999999999866543111 11123467777888999999999999999999
Q ss_pred HHHHHHHHHHHHHcccc
Q 004888 643 VWAIELQNTQDELFLDR 659 (725)
Q Consensus 643 ~~A~~L~~~~~~~F~D~ 659 (725)
+.+.++..+-..+|-+.
T Consensus 816 ~~i~e~~~~Er~~f~~~ 832 (963)
T COG4403 816 KKIKELLSYERMKFSDK 832 (963)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998887777553
No 146
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=96.45 E-value=0.0062 Score=58.89 Aligned_cols=22 Identities=9% Similarity=0.120 Sum_probs=18.3
Q ss_pred HhhcCCcEEEEEeccCChhhHhh
Q 004888 134 ARKRDVPIFLSIGYSTCHWCHVM 156 (725)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~~C~~M 156 (725)
+.-.||+|+|.|+++||+ |...
T Consensus 18 ~~~~Gk~vvl~fwatwC~-C~~e 39 (152)
T cd00340 18 SKYKGKVLLIVNVASKCG-FTPQ 39 (152)
T ss_pred HHhCCCEEEEEEEcCCCC-chHH
Confidence 333589999999999999 9864
No 147
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=96.44 E-value=0.45 Score=51.79 Aligned_cols=45 Identities=16% Similarity=0.104 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHccC--ChHHHHHHHHHHHHHHHhccCCCCceee
Q 004888 380 YDQGQLANVYLDAFSLTK--DVFYSYICRDILDYLRRDMIGPGGEIFS 425 (725)
Q Consensus 380 yDNA~Ll~~ya~Ay~~t~--d~~y~~vA~~~~~fl~~~m~~~~Ggfys 425 (725)
.+.|..+.+++.+....+ ++.+.+.+.++++||.+ .+.++|||..
T Consensus 92 ~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~-~Q~~dG~f~~ 138 (348)
T cd02889 92 DDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLS-MQNSNGGFAA 138 (348)
T ss_pred CChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHH-hccCCCCEee
Confidence 378999999998887763 57789999999999997 4678899854
No 148
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=96.44 E-value=0.0069 Score=55.49 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=18.5
Q ss_pred cCCcEEEEEecc-CChhhHhhh
Q 004888 137 RDVPIFLSIGYS-TCHWCHVME 157 (725)
Q Consensus 137 e~KpI~l~~g~~-wC~~C~~Me 157 (725)
.|||++|.|++. ||+.|+.--
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l 45 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAEL 45 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHH
T ss_pred CCCcEEEEEeCccCccccccch
Confidence 679999999999 999998644
No 149
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=96.39 E-value=0.021 Score=57.49 Aligned_cols=96 Identities=13% Similarity=-0.019 Sum_probs=52.4
Q ss_pred cCCcEEEEEe-ccCChhhHhhhhhccCCHHHHHHH-hcCcEEEEEcCCCCcchHHHHH-------------------HHH
Q 004888 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLL-NDWFVSIKVDREERPDVDKVYM-------------------TYV 195 (725)
Q Consensus 137 e~KpI~l~~g-~~wC~~C~~Me~e~f~d~eVa~~l-n~~FV~VkvD~ee~pd~~~~y~-------------------~~~ 195 (725)
.||+++|+|+ ++||+.|..-- -.|+ +..+.+ ++++..|-|..+.. ...+.|. +..
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el-~~l~--~~~~~~~~~gv~vi~VS~D~~-~~~~~~~~~~~~~~~l~fpllsD~~~~~a 105 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTEL-EDLA--DKYAELKKLGVEVYSVSTDTH-FVHKAWHDTSEAIGKITYPMLGDPTGVLT 105 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHH-HHHH--HHHHHHHhcCCcEEEEeCCCH-HHHHHHHhhhhhccCcceeEEECCccHHH
Confidence 5899999999 99999999733 2222 222222 23444444443321 1111110 111
Q ss_pred HHhcCCC------CcCcEEEecCCCCccccccc-cCCCCCCCcchHHHHHHHHH
Q 004888 196 QALYGGG------GWPLSVFLSPDLKPLMGGTY-FPPEDKYGRPGFKTILRKVK 242 (725)
Q Consensus 196 q~~~g~~------G~P~~vfl~pdG~~i~~~tY-~p~~~~~~~~~F~~~L~~i~ 242 (725)
. .+|+. +.|.++|+|++|++.+.... .++. ....++|+.|.
T Consensus 106 ~-~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~-----~~~~~ll~~l~ 153 (187)
T TIGR03137 106 R-NFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIG-----RDASELLRKIK 153 (187)
T ss_pred H-HhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCC-----CCHHHHHHHHH
Confidence 1 23442 35999999999998876322 2222 25666666653
No 150
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=96.35 E-value=0.37 Score=56.14 Aligned_cols=278 Identities=17% Similarity=0.158 Sum_probs=151.2
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCccccccccccCcceEEech
Q 004888 371 HVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTS 450 (725)
Q Consensus 371 ~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~ 450 (725)
.|+-||-.. |+|-.++-||.+++|+.|++.|.+..+-|..-+-.|.|-=|..++-... . .+. ..|..
T Consensus 150 ~vsvFEttI----R~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdTptgiP~~~vnl~~g----~-~~~----~~~~~ 216 (522)
T PTZ00470 150 GVSVFETTI----RVLGGLLSAYDLTGDEMYLEKAREIADRLLPAFNEDTGFPASEINLATG----R-KSY----PGWAG 216 (522)
T ss_pred eeeeeeeeh----hhHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccC----C-CCC----cccCC
Confidence 467788555 5888888899999999999999999999998886666643443332110 0 000 01110
Q ss_pred HHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCc-hHHHHhcCCC-HHHHHHHHHHHHHHHHhh
Q 004888 451 KEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDS-SASASKLGMP-LEKYLNILGECRRKLFDV 528 (725)
Q Consensus 451 ~Ei~~~lg~~~~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~-~~~a~~~g~~-~e~~~~~l~~~r~kL~~~ 528 (725)
+...+....+. -|+..+..++ .++..+..+.+.+.|.+.
T Consensus 217 ---------------------------------------~~~~lAe~gSl~LEF~~LS~lTGd~kY~~~a~~i~~~l~~~ 257 (522)
T PTZ00470 217 ---------------------------------------GCSILSEVGTLQLEFNYLSEITGDPKYAEYVDKVMDALFSM 257 (522)
T ss_pred ---------------------------------------CccchhhhhhHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhc
Confidence 00001100000 0122222222 245556666677777655
Q ss_pred hccCCCCCCCcch----------hhhcHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHh
Q 004888 529 RSKRPRPHLDDKV----------IVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRH 595 (725)
Q Consensus 529 R~~R~~P~lDdKi----------itsWNal~I~---aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~ 595 (725)
|... ...+-..| ..+|.|..-+ =|.+.+..+|.. .+.|.+.-.++++-++++
T Consensus 258 ~~~~-~GL~p~~i~~~~g~~~~~~~siGa~~DS~YEYLlK~~il~~~~--------------d~~~~~~~~~a~~~i~~~ 322 (522)
T PTZ00470 258 KPAI-NGLYPIFLNPDAGRFCGNHISLGALGDSYYEYLLKQWLYTNGR--------------EERYRRLFVESAKGIIEH 322 (522)
T ss_pred CCCC-CCccceEECCccCccCCCceeecCCcchhHHHHHHHHHhcCCC--------------cHHHHHHHHHHHHHHHHH
Confidence 4321 11111110 0112222211 366677777531 267888888888888887
Q ss_pred ccc-cCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHHHHccccCCCc----
Q 004888 596 LYD-EQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEF-------GSGTKWLVWAIELQNTQDELFLDREGGG---- 663 (725)
Q Consensus 596 l~d-~~~G~l~~s~~~g~~~~~~~leDyA~li~aLL~LYe~-------Tgd~~yL~~A~~L~~~~~~~F~D~~~Gg---- 663 (725)
+.. ..++-++....+|.. .....+--++++-|++.|.-. ...++|++.|++|.+.+...+....+|-
T Consensus 323 l~~~s~~~~~~v~~~~~~~-~~~~~~hL~cF~gG~~aLg~~~~~~~~~~~~~~~~~~a~~l~~tC~~~Y~~~~tGl~PE~ 401 (522)
T PTZ00470 323 LYKRSPKGLTYIAEMDGGS-LTNKMEHLACFAGGMFALGAAINITPDDEKSARYMEVGEEVTKTCYETYATSPTGLGPEI 401 (522)
T ss_pred hcccCCCCcEEEeeccCCc-CcchhhhhhhhccchhhhcccccccccccccHHHHHHHHHHHHHHHHHHHhcccCCCCce
Confidence 643 223433333222221 222334446667788887642 2356899999999999988775444442
Q ss_pred ccccCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhh
Q 004888 664 YFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLYLRQ 724 (725)
Q Consensus 664 yf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~t~~~~~~~y~~~A~~~l~~~~ 724 (725)
|...... ... .. ...|...+= ---+++.+.-|+++||+ +.||+.|.++++++.
T Consensus 402 ~~~~~~~-~~~--~~-~~~d~~Y~L-RPE~iES~fylyR~TgD---~~yre~gW~~f~ai~ 454 (522)
T PTZ00470 402 FHFDPNS-GDI--SP-NVHDSHYIL-RPETVESIFILYRLTGD---PKYREWAWKIFQAIE 454 (522)
T ss_pred EEeccCc-ccc--cc-ccCCCCCCC-ChhHHHHHHHHHHHhCC---HHHHHHHHHHHHHHH
Confidence 1111110 000 00 011211100 11478899999999997 799999999999874
No 151
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=96.31 E-value=0.011 Score=55.58 Aligned_cols=21 Identities=24% Similarity=0.675 Sum_probs=18.6
Q ss_pred cCCcEEEEEeccCChh-hHhhh
Q 004888 137 RDVPIFLSIGYSTCHW-CHVME 157 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~-C~~Me 157 (725)
.+|+++|.|+++||.+ |...-
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l 42 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTL 42 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHH
Confidence 6899999999999998 98654
No 152
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=96.24 E-value=2 Score=45.98 Aligned_cols=131 Identities=13% Similarity=-0.000 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE--ecCCCCCCCCCcchHHHHHH
Q 004888 550 ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS--FRNGPSKAPGFLDDYAFLIS 627 (725)
Q Consensus 550 I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s--~~~g~~~~~~~leDyA~li~ 627 (725)
+.+|+.+++.+.+ +.+.+.++.+..++.+.. +.. ++.+.. ..++.....++-.+-+=.+.
T Consensus 165 ~~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~wChG~~Gi~~ 226 (343)
T cd04434 165 LLALLLLYKKTVD----------------KSLEALIKALLKYERRLQ-DDS-GGFWWPSRSNGGNRFLVAWCHGAPGILL 226 (343)
T ss_pred HHHHHHHHHhcCC----------------hhHHHHHHHHHHHHHHcc-CCC-CCCCCCCCCCCCccccceecCCChhHHH
Confidence 6788888888754 567777777777665554 332 222221 01112222344444455778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHhhCCC
Q 004888 628 GLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGS 707 (725)
Q Consensus 628 aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~t~~~ 707 (725)
+++.+++.++++.+.+.+++..+.+.+..... ..+...-.|.+=.+..+++++..+++
T Consensus 227 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~lChG~~G~~~~ll~l~~~~~~- 284 (343)
T cd04434 227 ALLLAYKALGDDKYDEAAEKALELAWKRGLLE---------------------LKNPGLCHGIAGNLLILLLLYKLTGD- 284 (343)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHhhhcc---------------------CCCCCcCcCccchHHHHHHHHHHhCC-
Confidence 89999999999999999999888776654320 01111223445567778888999987
Q ss_pred CchHHHHHHHHHHHH
Q 004888 708 KSDYYRQNAEHSLYL 722 (725)
Q Consensus 708 ~~~~y~~~A~~~l~~ 722 (725)
+.|++.|+.+...
T Consensus 285 --~~~~~~a~~~~~~ 297 (343)
T cd04434 285 --LKFLARALALALL 297 (343)
T ss_pred --HHHHHHHHHHHHH
Confidence 6788888776653
No 153
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=96.22 E-value=0.012 Score=55.83 Aligned_cols=92 Identities=12% Similarity=0.027 Sum_probs=49.9
Q ss_pred cCCcEEEEEeccC-ChhhHhhhhhccCCHHHHHHHhc--CcEEEEEcCCCCcch--------------HHHHH-HHHHHh
Q 004888 137 RDVPIFLSIGYST-CHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDV--------------DKVYM-TYVQAL 198 (725)
Q Consensus 137 e~KpI~l~~g~~w-C~~C~~Me~e~f~d~eVa~~ln~--~FV~VkvD~ee~pd~--------------~~~y~-~~~q~~ 198 (725)
.||+++|+|++.| |..|+.-. +++.+...+ ++..|-|..+..... -..+. ......
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~------~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 98 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQT------KRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKA 98 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHH------HHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHH
Confidence 5899999999998 69999753 233322222 444444444321000 00010 111112
Q ss_pred cCCC----C--cCcEEEecCCCCccccc-cccCCCCCCCcchHHHHH
Q 004888 199 YGGG----G--WPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTIL 238 (725)
Q Consensus 199 ~g~~----G--~P~~vfl~pdG~~i~~~-tY~p~~~~~~~~~F~~~L 238 (725)
+|+. | .|++++++++|++++.. ++.+.. .|.+-++|
T Consensus 99 ~gv~~~~~~~~~~~~~iid~~G~I~~~~~~~~~~~----~~~~~~~~ 141 (143)
T cd03014 99 YGVLIKDLGLLARAVFVIDENGKVIYVELVPEITD----EPDYEAAL 141 (143)
T ss_pred hCCeeccCCccceEEEEEcCCCeEEEEEECCCccc----CCCHHHHh
Confidence 3433 2 68999999999998763 233322 34566655
No 154
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=96.22 E-value=1.3 Score=54.45 Aligned_cols=129 Identities=16% Similarity=0.116 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHH
Q 004888 549 VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISG 628 (725)
Q Consensus 549 ~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~leDyA~li~a 628 (725)
++++|+.+++++++ ++|++.|.++.++....+... .+... ..++.....++-.+.+=.+.+
T Consensus 648 i~~aL~~l~~~~~d----------------~~~~~~a~~~l~~~~~~~~~~-~~~w~--~~~~~~~~~~WChG~~GI~la 708 (825)
T cd04792 648 IAWALLRLYKVTGD----------------SRYLKLAHKALKYERRLFSEE-GWNWP--RKDGNSFSAAWCHGAPGILLA 708 (825)
T ss_pred HHHHHHHHHHHcCc----------------HHHHHHHHHHHHHHHHhcCHh-hcCCC--CcCcCCCCCcccCCcHHHHHH
Confidence 47789999999987 789999999999876654332 11111 011111223444555556778
Q ss_pred HHHHHHH--cCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHhhCC
Q 004888 629 LLDLYEF--GSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 706 (725)
Q Consensus 629 LL~LYe~--Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~t~~ 706 (725)
++.++++ .+++.+.+.+.++.+.+.... +.. +.. .--|++=.+..|+.++..+++
T Consensus 709 l~~~~~~~~~~d~~~~~~i~~~~~~~~~~~--------~~~---~~s------------lCHG~~Gil~~ll~~~~~~~~ 765 (825)
T cd04792 709 RLELLKFNDLDDEELKEEIEIALKTTLKEG--------FGN---NHS------------LCHGDLGNLEILLYAAKAFGD 765 (825)
T ss_pred HHHHHhcCccchHHHHHHHHHHHHHHHHhc--------CCC---CCe------------ecCCCcchHHHHHHHHHhcCC
Confidence 8999999 678888888888777665432 100 000 112233345777888988886
Q ss_pred CCchHHHHHHHHHHHH
Q 004888 707 SKSDYYRQNAEHSLYL 722 (725)
Q Consensus 707 ~~~~~y~~~A~~~l~~ 722 (725)
+.|++.|+++...
T Consensus 766 ---~~~~~~a~~~~~~ 778 (825)
T cd04792 766 ---EKLQELANSLAIK 778 (825)
T ss_pred ---HHHHHHHHHHHHH
Confidence 5788887776543
No 155
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=96.20 E-value=0.021 Score=56.35 Aligned_cols=96 Identities=15% Similarity=0.078 Sum_probs=53.8
Q ss_pred cCCcEEEEEeccC-ChhhHhhhhhccCCHHHHHHHhc--CcEEEEEcCCCCcchHHHHHH----------------HHHH
Q 004888 137 RDVPIFLSIGYST-CHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMT----------------YVQA 197 (725)
Q Consensus 137 e~KpI~l~~g~~w-C~~C~~Me~e~f~d~eVa~~ln~--~FV~VkvD~ee~pd~~~~y~~----------------~~q~ 197 (725)
.||+++|.|+++| |+.|...- +++.+..++ ++..|-|..+. +...+.|.+ ....
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~------~~l~~~~~~~~~~~vv~vs~D~-~~~~~~f~~~~~~~~~~~lsD~~~~~~~~ 115 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSV------RKFNQEAAELDNTVVLCISADL-PFAQKRFCGAEGLENVITLSDFRDHSFGK 115 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHH------HHHHHHHHHcCCcEEEEEeCCC-HHHHHHHHHhCCCCCceEeecCCccHHHH
Confidence 5899999999999 99999753 233333322 34444444332 111111210 1111
Q ss_pred hcCCCCcC---------cEEEecCCCCccccccccCCCCCCCcchHHHHHHHHH
Q 004888 198 LYGGGGWP---------LSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (725)
Q Consensus 198 ~~g~~G~P---------~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i~ 242 (725)
.+|+.+.| +++++|++|++.+...+.+.. ..+.+-++|+.++
T Consensus 116 ~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~---~~~~~~~~l~~l~ 166 (167)
T PRK00522 116 AYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVPEIT---NEPDYDAALAALK 166 (167)
T ss_pred HhCCeecccccCCceeeEEEEECCCCeEEEEEECCCcC---CCCCHHHHHHHhh
Confidence 23555555 999999999998764211111 2346777777654
No 156
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=96.18 E-value=0.014 Score=47.88 Aligned_cols=62 Identities=16% Similarity=0.177 Sum_probs=38.9
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCcccc
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~~ 219 (725)
+..|+++||++|+.+.. .++. .+.-..++|+++.+...+.+ ...+|..+.|++++- |+.+.|
T Consensus 2 i~lf~~~~C~~C~~~~~-~l~~--------~~i~~~~vdi~~~~~~~~~~----~~~~~~~~vP~~~~~---~~~~~g 63 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKE-YLTS--------KGIAFEEIDVEKDSAAREEV----LKVLGQRGVPVIVIG---HKIIVG 63 (74)
T ss_pred EEEEcCCCChhHHHHHH-HHHH--------CCCeEEEEeccCCHHHHHHH----HHHhCCCcccEEEEC---CEEEee
Confidence 45689999999999853 2321 24555667777655433322 223488899999873 665433
No 157
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=96.17 E-value=0.022 Score=61.22 Aligned_cols=85 Identities=22% Similarity=0.343 Sum_probs=61.0
Q ss_pred hhhhcH---HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCC
Q 004888 541 VIVSWN---GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPG 617 (725)
Q Consensus 541 iitsWN---al~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~ 617 (725)
.++.|- -=+|..|++|++|+++ ++|++.|.++++-+++.-.-..+-++-| |.+ |
T Consensus 274 rLVhWcHGApGv~~~L~kAy~VF~E----------------ekyl~aa~ecadvVW~rGlLkkg~Gich----Gva---G 330 (403)
T KOG2787|consen 274 RLVHWCHGAPGVAYTLAKAYQVFKE----------------EKYLEAAMECADVVWKRGLLKKGVGICH----GVA---G 330 (403)
T ss_pred eeeeeccCCchHHHHHHHHHHHhhH----------------HHHHHHHHHHHHHHHHhhhhhcCCcccc----ccc---C
Confidence 455563 2357789999999997 7899999999999976432222223333 211 1
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004888 618 FLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDEL 655 (725)
Q Consensus 618 ~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~ 655 (725)
+ .+++|.||++|+|.+||.+|.+.++.+.+.
T Consensus 331 --N-----aYvFLsLyRLT~d~kYlyRA~kFae~lld~ 361 (403)
T KOG2787|consen 331 --N-----AYVFLSLYRLTGDMKYLYRAKKFAEWLLDY 361 (403)
T ss_pred --c-----hhhhHhHHHHcCcHHHHHHHHHHHHHHHhh
Confidence 1 335677999999999999999999988764
No 158
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=96.14 E-value=0.023 Score=57.43 Aligned_cols=99 Identities=11% Similarity=0.020 Sum_probs=53.7
Q ss_pred cCCcEEEEEe-ccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHH------------------HHHHH
Q 004888 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYM------------------TYVQA 197 (725)
Q Consensus 137 e~KpI~l~~g-~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~------------------~~~q~ 197 (725)
.||+++|.|+ ++||+.|..- --.|. ....++-+.++..|-|..+. +...+.+. ..+..
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~e-l~~l~-~~~~~f~~~g~~vigIS~D~-~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~ 106 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTE-LGDVA-DHYEELQKLGVDVYSVSTDT-HFTHKAWHSSSETIAKIKYAMIGDPTGALTR 106 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHH-HHHHH-HHHHHHHhCCCEEEEEeCCC-HHHHHHHHHhhccccCCceeEEEcCchHHHH
Confidence 5899999999 9999999973 32333 12222222344455454432 11111111 01112
Q ss_pred hcCC----CCc--CcEEEecCCCCccccccccCCCCCCCcchHHHHHHHHH
Q 004888 198 LYGG----GGW--PLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (725)
Q Consensus 198 ~~g~----~G~--P~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i~ 242 (725)
.+|+ .|+ |.++++||+|++.+..-+-.+. + .+..++|+.+.
T Consensus 107 ~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~---~-~~~~eil~~l~ 153 (187)
T PRK10382 107 NFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGI---G-RDASDLLRKIK 153 (187)
T ss_pred HcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCC---C-CCHHHHHHHHH
Confidence 2354 366 9999999999988763322221 1 24556665553
No 159
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=96.12 E-value=0.031 Score=55.20 Aligned_cols=81 Identities=9% Similarity=-0.019 Sum_probs=46.6
Q ss_pred hcCCcEEEEEe-ccCChhhHhhhhhccCCHHHHHHH-hcCcEEEEEcCCCCcchHHHHHHH-------------------
Q 004888 136 KRDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLL-NDWFVSIKVDREERPDVDKVYMTY------------------- 194 (725)
Q Consensus 136 ~e~KpI~l~~g-~~wC~~C~~Me~e~f~d~eVa~~l-n~~FV~VkvD~ee~pd~~~~y~~~------------------- 194 (725)
-.||+++|.|+ ++||+.|...-. .|+ ++.+.+ ++++..|-|..+.... .+.+.+.
T Consensus 27 ~~Gk~vvl~F~~~~~c~~C~~~l~-~l~--~~~~~~~~~~v~vv~Is~d~~~~-~~~~~~~~~~~~~~~~~~f~~l~D~~ 102 (173)
T cd03015 27 YKGKWVVLFFYPLDFTFVCPTEII-AFS--DRYEEFKKLNAEVLGVSTDSHFS-HLAWRNTPRKEGGLGKINFPLLADPK 102 (173)
T ss_pred hCCCEEEEEEECCCCCCcCHHHHH-HHH--HHHHHHHHCCCEEEEEecCCHHH-HHHHHHhhhhhCCccCcceeEEECCc
Confidence 35899999999 899999997432 222 233333 2355555555442211 1112111
Q ss_pred --HHHhcCCC------CcCcEEEecCCCCccccc
Q 004888 195 --VQALYGGG------GWPLSVFLSPDLKPLMGG 220 (725)
Q Consensus 195 --~q~~~g~~------G~P~~vfl~pdG~~i~~~ 220 (725)
+...+|+. .+|+++++|++|++.+..
T Consensus 103 ~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~ 136 (173)
T cd03015 103 KKISRDYGVLDEEEGVALRGTFIIDPEGIIRHIT 136 (173)
T ss_pred hhHHHHhCCccccCCceeeEEEEECCCCeEEEEE
Confidence 01113442 578999999999988653
No 160
>PTZ00256 glutathione peroxidase; Provisional
Probab=96.10 E-value=0.0094 Score=59.69 Aligned_cols=21 Identities=5% Similarity=-0.020 Sum_probs=15.7
Q ss_pred hhcCCcEE-EEEeccCChhhHh
Q 004888 135 RKRDVPIF-LSIGYSTCHWCHV 155 (725)
Q Consensus 135 k~e~KpI~-l~~g~~wC~~C~~ 155 (725)
.-.||+|+ +.+.++||+.|+.
T Consensus 37 ~~~Gk~vvlv~n~atwCp~C~~ 58 (183)
T PTZ00256 37 KFKGKKAIIVVNVACKCGLTSD 58 (183)
T ss_pred HhCCCcEEEEEEECCCCCchHH
Confidence 33589754 4458999999996
No 161
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=96.10 E-value=0.27 Score=56.34 Aligned_cols=300 Identities=15% Similarity=0.062 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCeEEE-EecCCCCC--CCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 004888 335 SEGQKMVLFTLQCMAKGGIHDHVGGGFHR-YSVDERWH--VPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDY 411 (725)
Q Consensus 335 ~~~~~~~~~TL~~ma~gGi~D~v~GGF~R-Ys~D~~W~--vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~f 411 (725)
+..++.|..--+++.. .+|--.|=.+. ......-. .|.-+-.|-+-+-+.-=|..-.++|||+.|.+.|+++.+.
T Consensus 98 ~~lL~kA~~lad~Ll~--aF~t~~g~P~~~~n~~~~~~~~~~~~~~~la~~gs~~lEf~~LS~lTgd~kY~~~a~~~~~~ 175 (452)
T PF01532_consen 98 PILLSKAVELADRLLP--AFDTPTGIPYPRVNLRTGGKNRWPGGESSLAEAGSLQLEFTRLSQLTGDPKYFDAADRIYDA 175 (452)
T ss_dssp HHHHHHHHHHHHHHGG--GGSSSSS---SEEETTTCEEETTCCGEEEHHHHCSSHHHHHHHHHHHS-THHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--hccCCCccccceeeecccCCCCCCCCcccccccccceechhHHHHHhhccHHHHHHHHHHHH
Confidence 3444444444555544 56655554443 22221111 1222346778888888889999999999999999999999
Q ss_pred HHHh--ccCCCCceeeeccCCCccccccccccCcceEEechHHHHHHhhhh-HHHHHHHhcccCCCCcCCCCCCCCCCCC
Q 004888 412 LRRD--MIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH-AILFKEHYYLKPTGNCDLSRMSDPHNEF 488 (725)
Q Consensus 412 l~~~--m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~lg~~-~~l~~~~y~l~~~Gn~e~~~~~dp~~~f 488 (725)
|.+. -....|.+-..+|+++.. -.+..+.|. +.+|. .+.+.+.|-+....
T Consensus 176 l~~~~~~~~~~gL~p~~id~~~g~-------~~~~~~~~G------a~~DS~YEYLlK~~lL~g~~-------------- 228 (452)
T PF01532_consen 176 LWRSQNRSKIPGLFPNFIDPSTGK-------WTSSSISLG------AGGDSFYEYLLKMYLLLGGT-------------- 228 (452)
T ss_dssp HHCCCCCHSBTTB-BSEEETTTS--------BSSTEE-SS------TTTHHHHHHHHHHHHHTTTT--------------
T ss_pred HHHhhhccCCcccCcceecCCcCc-------ccccccccC------CCcchHHHhhhhhhhhcCcc--------------
Confidence 9872 222446555577776531 112333333 11222 23333333332100
Q ss_pred CCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCC---CCCCCcch------h----hhcHHHHHHHHHH
Q 004888 489 KGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRP---RPHLDDKV------I----VSWNGLVISSFAR 555 (725)
Q Consensus 489 ~g~nvL~~~~~~~~~a~~~g~~~e~~~~~l~~~r~kL~~~R~~R~---~P~lDdKi------i----tsWNal~I~aLa~ 555 (725)
.+.+ .+-..+.++.+++.|+.....+. ..++.+.. + ..-.+++-..|+-
T Consensus 229 -----------d~~~-------~~~~~~a~~~i~~~Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l~L 290 (452)
T PF01532_consen 229 -----------DEQY-------RDMYDEAVDAIKKHLLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGMLAL 290 (452)
T ss_dssp -----------THHH-------HHHHHHHHHHHHHHTEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGGHHHHHHH
T ss_pred -----------chHH-------HHHHHHHHHHHHHHhhccCCCCCccceeEeeeeecccCccccccccchhhcchhHHHH
Confidence 0001 12223344444555432211111 11111110 0 0011222223333
Q ss_pred HHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec-CCC---------CCCC--C-CcchH
Q 004888 556 ASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR-NGP---------SKAP--G-FLDDY 622 (725)
Q Consensus 556 A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~-~g~---------~~~~--~-~leDy 622 (725)
.++.+++ +.+++.|.++.+....-.....+|..-..+. +.. .... . ....|
T Consensus 291 g~~~~~~----------------~~~~~~A~~l~~~C~~~y~~~~tGl~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 354 (452)
T PF01532_consen 291 GAKLFND----------------EGDLELAEELTETCYWLYKSTPTGLGPEIFSFDPCEENCQWDEERKDFMIKISDPRY 354 (452)
T ss_dssp HHHTTTC----------------HHHHHHHHHHHHHHHHHHHTSSSSS--SEEEESCSCG--TEETGGCSCCHHGGG--B
T ss_pred hhcccCc----------------hhHHHHHHHHHHHHHHHHHhcccCCCceEEEeeccccccccchhhcccccccccccc
Confidence 4444433 7899999999988765443322455443321 110 0000 0 11122
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHH
Q 004888 623 ---AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVR 699 (725)
Q Consensus 623 ---A~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~Llr 699 (725)
-.+|+.+.-+|++|||+.|+++|.++++.+.++..- ..||-...+-.. .....++.+|| -..|+-|=-
T Consensus 355 ~LRPE~iES~fylyR~TgD~~yre~gw~if~ai~k~~r~--~~G~a~i~dv~~-----~~~~~~D~meS--f~laETlKY 425 (452)
T PF01532_consen 355 LLRPETIESLFYLYRATGDPKYREWGWDIFQAIEKYCRT--ECGYAGIKDVTS-----DPPQKDDRMES--FFLAETLKY 425 (452)
T ss_dssp -S--HHHHHHHHHHHHH-BHHHHHHHHHHHHHHHHHTEE--TTEE--BSETTS-----SSSCBBS-B-C--HHHHTHHHH
T ss_pred cchhhhhhheeEEEEEcCCchHHHHHHHHHHHHHHhccc--ceehhhhcccCc-----CCcccCCCccc--eehHhhhHH
Confidence 379999999999999999999999999999998843 345543221100 01112333444 356677666
Q ss_pred HHHhhCC
Q 004888 700 LASIVAG 706 (725)
Q Consensus 700 L~~~t~~ 706 (725)
|+-+..+
T Consensus 426 lYLlFsd 432 (452)
T PF01532_consen 426 LYLLFSD 432 (452)
T ss_dssp HHHHTSS
T ss_pred HHhhcCC
Confidence 7776665
No 162
>PLN03009 cellulase
Probab=96.05 E-value=0.2 Score=58.05 Aligned_cols=66 Identities=18% Similarity=0.237 Sum_probs=46.7
Q ss_pred CCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHH---HHHccCChHHHHHHHHHHHHHHHhccCCCCceeeec
Q 004888 357 VGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLD---AFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAE 427 (725)
Q Consensus 357 v~GGF~RYs~D~~W~vPHFEKMLyDNA~Ll~~ya~---Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~Ggfysa~ 427 (725)
+-||+|-=-.--...+| |-|--..|+|.|.+ ++...+-|.+++.++-.+|||++ |..++|+||.-+
T Consensus 72 lsGGwyDAGD~~Ky~~p----~a~s~~~L~w~~~~f~d~~~~~~~~diLdeikw~~D~llk-m~~~~~~~y~qV 140 (495)
T PLN03009 72 LTGGYYDAGDNVKFGFP----MAFTTTMLAWSVIEFGDLMPSSELRNSLVAIRWATDYLLK-TVSQPNRIFVQV 140 (495)
T ss_pred CCCcceeCCCCceeccc----hHHHHHHHHHHHHHhHhhCCccccHHHHHHHHHHHHHHHH-cccCcCeEEEEe
Confidence 56777652222233345 77777788888765 55556678899999999999998 766678898743
No 163
>PLN02266 endoglucanase
Probab=95.99 E-value=0.37 Score=55.91 Aligned_cols=83 Identities=17% Similarity=0.146 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCC-----CC---CCC
Q 004888 546 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP-----SK---APG 617 (725)
Q Consensus 546 Nal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~-----~~---~~~ 617 (725)
-+-++.+||.|++++++.+. .| -.++|+.|+++.+|..++= |.+ .++. +. ..+
T Consensus 192 a~e~AAALAaas~vfk~~D~--~y--------A~~~L~~Ak~ly~fa~~~~-----g~y----~~~~~~~~~~~y~s~s~ 252 (510)
T PLN02266 192 AAETAAALAAASLVFRKSDP--TY--------SKLLVRRAIRVFQFADKYR-----GAY----SNGLKPDVCPFYCSYSG 252 (510)
T ss_pred HHHHHHHHHHHHHHhccCCH--HH--------HHHHHHHHHHHHHHHHhCC-----CCc----cCCCCcccCCCcccCCc
Confidence 37788999999999986321 11 1468999999999987642 111 1110 00 112
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004888 618 FLDDYAFLISGLLDLYEFGSGTKWLVWAIELQN 650 (725)
Q Consensus 618 ~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~ 650 (725)
+.| .+++|.+.||.+|||+.|++.++....
T Consensus 253 ~~D---El~WAAawLy~ATGd~~Yl~~~~~~~~ 282 (510)
T PLN02266 253 YQD---ELLWGAAWLHKATKNPTYLNYIQVNGQ 282 (510)
T ss_pred chH---HHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 333 456678999999999999998876543
No 164
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=95.98 E-value=0.019 Score=49.77 Aligned_cols=60 Identities=15% Similarity=0.257 Sum_probs=41.5
Q ss_pred CCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc---CcEEEEEcCC-CCcchHHHHHHHHHHhcCCCCcCcEEE
Q 004888 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDRE-ERPDVDKVYMTYVQALYGGGGWPLSVF 209 (725)
Q Consensus 138 ~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~---~FV~VkvD~e-e~pd~~~~y~~~~q~~~g~~G~P~~vf 209 (725)
++++++.|+++||+.|+.+. |.+.++..+ ....+.+|.. ..+++...|.. ....+|..++
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~------~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~p~~~~ 95 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEA------PLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGV------AVRSIPTLLL 95 (127)
T ss_pred CceEEEEEEcCcCHHHHhhc------hhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhh------hhccCCeEEE
Confidence 89999999999999999983 555554443 3567777775 55666555522 1446687763
No 165
>PLN02613 endoglucanase
Probab=95.89 E-value=0.47 Score=54.96 Aligned_cols=83 Identities=23% Similarity=0.278 Sum_probs=54.8
Q ss_pred cHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE--ecCCCCCCCCCcchH
Q 004888 545 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS--FRNGPSKAPGFLDDY 622 (725)
Q Consensus 545 WNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s--~~~g~~~~~~~leDy 622 (725)
.-+-+..+||.|++++++.+. .| -.++|+.|+++.+|..++= |.+..+ +.. ...++.|+
T Consensus 173 ~a~~~AAALAaas~vfk~~D~--~y--------A~~~L~~Ak~ly~~a~~~~-----g~y~~~~~~y~---s~s~~~DE- 233 (498)
T PLN02613 173 AAGEAAAALAAASLVFKDVDS--SY--------SSKLLNHARSLFEFADKYR-----GSYQASCPFYC---SYSGYQDE- 233 (498)
T ss_pred HHHHHHHHHHHHHHhcccCCH--HH--------HHHHHHHHHHHHHHHHhCC-----CCcCCCCCccc---ccCccchH-
Confidence 347789999999999987321 11 1467999999999987641 111100 000 01233344
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004888 623 AFLISGLLDLYEFGSGTKWLVWAIEL 648 (725)
Q Consensus 623 A~li~aLL~LYe~Tgd~~yL~~A~~L 648 (725)
++.|.+.||.+|||+.|++.+...
T Consensus 234 --l~WAAawLy~aTGd~~Yl~~~~~~ 257 (498)
T PLN02613 234 --LLWAAAWLYKATGEKKYLNYVISN 257 (498)
T ss_pred --HHHHHHHHHHHhCCHHHHHHHHhc
Confidence 567889999999999999988754
No 166
>PLN02171 endoglucanase
Probab=95.87 E-value=0.45 Score=56.51 Aligned_cols=85 Identities=16% Similarity=0.226 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhc--ccc---CCCeEEEEecCCCCCCCCCcch
Q 004888 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHL--YDE---QTHRLQHSFRNGPSKAPGFLDD 621 (725)
Q Consensus 547 al~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l--~d~---~~G~l~~s~~~g~~~~~~~leD 621 (725)
+-+..|||.|++++++.+ ..| -.++|+.|+++.+|..++= ++. ...++|. ...++.
T Consensus 179 ~e~AAAlAaaS~vfk~~D--~~Y--------A~~lL~~Ak~ly~fA~~~~g~y~~~~~~~~~~Y~-------s~s~y~-- 239 (629)
T PLN02171 179 GETAAAMAAASIVFRRSN--PGY--------ANELLTHAKQLFDFADKYRGKYDSSITVAQKYYR-------SVSGYG-- 239 (629)
T ss_pred HHHHHHHHHHHHhccccC--HHH--------HHHHHHHHHHHHHHHHhCCCcccCCCcccCCccC-------CCCCcc--
Confidence 777889999999998622 111 1467999999999987641 110 0011111 011232
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004888 622 YAFLISGLLDLYEFGSGTKWLVWAIELQNT 651 (725)
Q Consensus 622 yA~li~aLL~LYe~Tgd~~yL~~A~~L~~~ 651 (725)
=.+++|...||.+|||..||+.+....+.
T Consensus 240 -DEl~WAAawLy~ATgd~~Yl~~~~~~~~~ 268 (629)
T PLN02171 240 -DELLWAAAWLYQATNNQYYLDYLGNNGDA 268 (629)
T ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 35688999999999999999988776543
No 167
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=95.86 E-value=0.02 Score=47.99 Aligned_cols=63 Identities=19% Similarity=0.191 Sum_probs=38.4
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhc-CCCCcCcEEEecCCCCcccc
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALY-GGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~-g~~G~P~~vfl~pdG~~i~~ 219 (725)
+..|+++||++|+.+.. +.+.+.-.|. .+|+++.++....+ ..+. +..++|+++ + .+|+++..
T Consensus 2 v~ly~~~~C~~C~~~~~-------~L~~~~~~~~--~idi~~~~~~~~~~----~~~~~~~~~vP~i~-~-~~g~~l~~ 65 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMR-------TLDKLGAAYE--WVDIEEDEGAADRV----VSVNNGNMTVPTVK-F-ADGSFLTN 65 (77)
T ss_pred EEEEECCCChhHHHHHH-------HHHHcCCceE--EEeCcCCHhHHHHH----HHHhCCCceeCEEE-E-CCCeEecC
Confidence 46789999999999863 2223333343 46666655544333 2333 778999864 3 46676643
No 168
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=95.83 E-value=0.034 Score=47.35 Aligned_cols=64 Identities=22% Similarity=0.288 Sum_probs=41.2
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCccc
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 218 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~ 218 (725)
++.|+.+||++|+.+. ++.+.++..|..+.+|.++... .+...++..+|..++|.. |++ |+.+.
T Consensus 2 v~~y~~~~Cp~C~~~~-------~~l~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~g~~~~P~v-~~~--g~~ig 65 (82)
T cd03419 2 VVVFSKSYCPYCKRAK-------SLLKELGVKPAVVELDQHEDGS---EIQDYLQELTGQRTVPNV-FIG--GKFIG 65 (82)
T ss_pred EEEEEcCCCHHHHHHH-------HHHHHcCCCcEEEEEeCCCChH---HHHHHHHHHhCCCCCCeE-EEC--CEEEc
Confidence 3678899999999986 3444455568888888765421 122233445688899996 443 55553
No 169
>PLN00119 endoglucanase
Probab=95.81 E-value=0.49 Score=54.63 Aligned_cols=85 Identities=14% Similarity=0.051 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCCCCCCCcchHHHH
Q 004888 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPSKAPGFLDDYAFL 625 (725)
Q Consensus 547 al~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~-~~g~~~~~~~leDyA~l 625 (725)
+-+..+||.+++++++.+. .| -.++|+.|+++.+|..++- | .+... .++...-. -...+-.+
T Consensus 180 ~~~AAAlA~as~vfk~~D~--~y--------A~~lL~~Ak~~y~fA~~~~-----g-~y~~~~~~~~g~Y~-ss~~~DEl 242 (489)
T PLN00119 180 GETAAAMAAASIAFAPSDP--AY--------ASILIGHAKDLFEFAKAHP-----G-LYQNSIPNAGGFYA-SSGYEDEL 242 (489)
T ss_pred HHHHHHHHHHHHHcccCCH--HH--------HHHHHHHHHHHHHHHHhCC-----C-cccCCCCCCCCCCC-CCchhhHH
Confidence 7778899999999986221 11 1567999999999987641 1 11110 01000000 01223468
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 004888 626 ISGLLDLYEFGSGTKWLVWAIEL 648 (725)
Q Consensus 626 i~aLL~LYe~Tgd~~yL~~A~~L 648 (725)
+.|.+.||.+|||..|++.+...
T Consensus 243 ~WAAawLY~aTgd~~Yl~~~~~~ 265 (489)
T PLN00119 243 LWAAAWLHRATNDQTYLDYLTQA 265 (489)
T ss_pred HHHHHHHHHHhCCHHHHHHHHhc
Confidence 89999999999999999876643
No 170
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=95.73 E-value=0.0031 Score=68.43 Aligned_cols=247 Identities=16% Similarity=0.204 Sum_probs=139.1
Q ss_pred HHH-HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCC---CCceeeeccCCCccccccccccCcceEEechHHHH
Q 004888 379 LYD-QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGP---GGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVE 454 (725)
Q Consensus 379 LyD-NA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~---~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~ 454 (725)
||+ -|-++.+|.++++.++|+.|.+.+.+.++.+...+... ..|+|. |..|- +|...
T Consensus 7 ly~G~~Gi~l~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~gl~~--------------G~~Gi--~~~l~--- 67 (355)
T PF05147_consen 7 LYDGSAGIALFLSELYRITGDPKYLDLAEKLLEKLINYIENNPYDSIGLFS--------------GLAGI--AYALS--- 67 (355)
T ss_dssp TTTSHHHHHHHHHCCCCCCTHHHHHHHHHHHHHHHCCCHHCC--S--STTT--------------SCHHH--HHHHH---
T ss_pred CCCchHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhccCcCCcccC--------------ChHHH--HHHHH---
Confidence 455 67789999999999999999999999999998866432 222322 01111 01110
Q ss_pred HHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCC
Q 004888 455 DILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPR 534 (725)
Q Consensus 455 ~~lg~~~~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~e~~~~~l~~~r~kL~~~R~~R~~ 534 (725)
-+...+ -....+.+.++.+.+.+.+.......
T Consensus 68 --------------~~~~~~----------------------------------~~~~~~~~~l~~~~~~i~~~~~~~~~ 99 (355)
T PF05147_consen 68 --------------YLSKRL----------------------------------GDEKYIEELLKRILNIIENSISNDSN 99 (355)
T ss_dssp --------------HHCCCT----------------------------------CHHHHHHHHHHHHHHCHHHHHHCT--
T ss_pred --------------HHHHhc----------------------------------cchHHHHHHHHHHHHHHHHhhhhccc
Confidence 000000 01122234555555544433333221
Q ss_pred CCCCcchhhhcHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccC--CCeEEEEecCCC
Q 004888 535 PHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQ--THRLQHSFRNGP 612 (725)
Q Consensus 535 P~lDdKiitsWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~--~G~l~~s~~~g~ 612 (725)
... | ++... +=++..|...++.+++ +.+++.+.+..+.|.+....-. ...+...+. ..
T Consensus 100 ~~~-D-~l~G~-aGi~~~ll~~~~~~~~----------------~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~-~~ 159 (355)
T PF05147_consen 100 NDY-D-LLSGL-AGIGLYLLSLYEKTKD----------------PKYLDIIEKILEKLLESIINDDPSENQIGSEWK-EG 159 (355)
T ss_dssp GGC-S-TTTSH-HHHHHHHCCHHHHHCC----------------HHS-HHHHHHHHHCCCHHCCCHTCCGSSSHHCH-TT
T ss_pred ccc-h-hhccc-HHHHHHHHHHHhhccc----------------hHHHHHHHHHHHHHHHHHhhcccccCCCccccC-CC
Confidence 111 2 12222 2235566666777655 6788888888888866654310 000000000 11
Q ss_pred CCCCCCcchHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCChHH
Q 004888 613 SKAPGFLDDYAFLISGLLDLY-EFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNS 691 (725)
Q Consensus 613 ~~~~~~leDyA~li~aLL~LY-e~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Ns 691 (725)
....|+..+.+=.+.+|+.+| +.++++++++.++++.+...+++...+ |+|......... .. -.+--+|.+
T Consensus 160 ~~~~G~aHG~~Gi~~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~--~~~WC~G~~ 231 (355)
T PF05147_consen 160 FINLGFAHGIAGILYALLRLYKKGTKDPEYLKLIEQILNFLLKHFNTDD-GGWPDNRNNSNY-----KS--RPSWCYGSP 231 (355)
T ss_dssp BEE-STTTSHHHHHHHHCHCCHHT--HHHHHHCHHHHHHHHHHC--TGC-CT--SECTHHHH-----HC----SSSSSHH
T ss_pred CccCCccccHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHHhcCccc-CCCCCCCCcccc-----cc--ccccccCcH
Confidence 223588888999999999999 699999999999999999988875434 445543321100 00 122346777
Q ss_pred HHHHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 004888 692 VSVINLVRLASIVAGSKSDYYRQNAEHSLYLR 723 (725)
Q Consensus 692 v~a~~LlrL~~~t~~~~~~~y~~~A~~~l~~~ 723 (725)
=++..+++++..+++ +.+.+.+++++...
T Consensus 232 Gi~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 260 (355)
T PF05147_consen 232 GILLALLKAYKILDD---EEYDEEAEQALESI 260 (355)
T ss_dssp HHHHHHHHHHHHCT----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhch---HHHHHHHHHHHHHH
Confidence 788888999999975 78988888777653
No 171
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=95.73 E-value=0.025 Score=46.34 Aligned_cols=62 Identities=21% Similarity=0.277 Sum_probs=36.7
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCcccc
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~~ 219 (725)
++.|+.+||++|+.+.. .+ +..+-.|. .+|++..++..+.+ +.+.+..++|+.++ +|+.+.+
T Consensus 2 v~l~~~~~c~~c~~~~~-~l------~~~~i~~~--~~~i~~~~~~~~~~----~~~~~~~~vP~i~~---~~~~i~g 63 (73)
T cd02976 2 VTVYTKPDCPYCKATKR-FL------DERGIPFE--EVDVDEDPEALEEL----KKLNGYRSVPVVVI---GDEHLSG 63 (73)
T ss_pred EEEEeCCCChhHHHHHH-HH------HHCCCCeE--EEeCCCCHHHHHHH----HHHcCCcccCEEEE---CCEEEec
Confidence 56789999999998752 22 22222344 45555444443333 33447789999875 3455543
No 172
>PLN02909 Endoglucanase
Probab=95.70 E-value=0.5 Score=54.55 Aligned_cols=79 Identities=14% Similarity=0.176 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC---CCCCCcchHH
Q 004888 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS---KAPGFLDDYA 623 (725)
Q Consensus 547 al~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~---~~~~~leDyA 623 (725)
+-+..+||.|++++++.+ ..| -.++|+.|+++.+|..++= |. +. +..+ ...++.|
T Consensus 183 ~~~AAAlA~as~vfk~~D--~~y--------A~~lL~~Ak~~y~fA~~~~-----g~-y~---~~~~~y~s~s~y~D--- 240 (486)
T PLN02909 183 AETAAAMAASSMVFRHVD--HKY--------SRRLLNKAKLLFKFAKAHK-----GT-YD---GECPFYCSYSGYND--- 240 (486)
T ss_pred HHHHHHHHHHHHhhccCC--HHH--------HHHHHHHHHHHHHHHHhCC-----CC-cC---CCCCccccCCCcch---
Confidence 777889999999998622 111 1468999999999998752 11 10 1001 1123333
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 004888 624 FLISGLLDLYEFGSGTKWLVWAIE 647 (725)
Q Consensus 624 ~li~aLL~LYe~Tgd~~yL~~A~~ 647 (725)
.+++|...||.+|||..|++.+..
T Consensus 241 El~WAAawLy~aTgd~~Yl~~~~~ 264 (486)
T PLN02909 241 ELLWAATWLYKATKKQMYLKYIKH 264 (486)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHh
Confidence 568888999999999999997765
No 173
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=95.67 E-value=0.057 Score=62.67 Aligned_cols=97 Identities=13% Similarity=0.072 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCccc-ccCCCCCccccccccCCCCCCCChHHHHHHHHHHHH
Q 004888 623 AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYF-NTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLA 701 (725)
Q Consensus 623 A~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf-~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~ 701 (725)
.=.+-|||.+|.+|||+.||+.|++|.+.+..-| |..+|--+ ...-.......... ....++.+.-+.+...+.+|+
T Consensus 158 IR~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AF-dTptgiP~~~vnl~~g~~~~~~~-~~~~~~lAe~gSl~LEF~~LS 235 (522)
T PTZ00470 158 IRVLGGLLSAYDLTGDEMYLEKAREIADRLLPAF-NEDTGFPASEINLATGRKSYPGW-AGGCSILSEVGTLQLEFNYLS 235 (522)
T ss_pred hhhHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-cCCCCCCcceeecccCCCCCccc-CCCccchhhhhhHHHHHHHHH
Confidence 4458899999999999999999999999999888 54444211 11100000000000 012234556667888999999
Q ss_pred HhhCCCCchHHHHHHHHHHHHhh
Q 004888 702 SIVAGSKSDYYRQNAEHSLYLRQ 724 (725)
Q Consensus 702 ~~t~~~~~~~y~~~A~~~l~~~~ 724 (725)
++||+ +.|.+.|+++...+.
T Consensus 236 ~lTGd---~kY~~~a~~i~~~l~ 255 (522)
T PTZ00470 236 EITGD---PKYAEYVDKVMDALF 255 (522)
T ss_pred HhhCC---HHHHHHHHHHHHHHH
Confidence 99998 789999999887663
No 174
>PLN02340 endoglucanase
Probab=95.65 E-value=0.2 Score=59.24 Aligned_cols=186 Identities=17% Similarity=0.172 Sum_probs=107.7
Q ss_pred CCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHH---HHHcc-CChHHHHHHHHHHHHHHHhccCCCCceeeec-cCCC
Q 004888 357 VGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLD---AFSLT-KDVFYSYICRDILDYLRRDMIGPGGEIFSAE-DADS 431 (725)
Q Consensus 357 v~GGF~RYs~D~~W~vPHFEKMLyDNA~Ll~~ya~---Ay~~t-~d~~y~~vA~~~~~fl~~~m~~~~Ggfysa~-DADs 431 (725)
+.||+|- ..=++-.---|-|.-+.|+|.|.+ ++... +-+.+++.++-.+||+++ |..+++.||.-+ |.+.
T Consensus 74 lsGGwyD----AGD~vKf~~p~a~t~t~L~w~~~ef~~~~~~~~~~~~~ldeirw~~Dyllk-~~~~~~~~~~qVGdg~~ 148 (614)
T PLN02340 74 LVGGYYD----AGDHVKFGLPMAFAVTMLSWGAVDFRKEITALNQMQRTLWAIRWGTDYFIK-AHTQPNVLWGQVGDGDS 148 (614)
T ss_pred CCCCcee----CCCcceecchhHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHH-hcCCCCeEEEEeCCCCc
Confidence 6788885 222333334488888999999876 34332 358899999999999998 666667777643 2222
Q ss_pred ccccccccccCcceEEechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCH
Q 004888 432 AETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPL 511 (725)
Q Consensus 432 ~~~~~~~~~~EGayY~wt~~Ei~~~lg~~~~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~ 511 (725)
. ++ .|...|-.. .-+.+..+
T Consensus 149 D------H~------~W~~PE~~~---------------------------------~~R~~y~i--------------- 168 (614)
T PLN02340 149 D------HY------CWERAEDMT---------------------------------TPRTAYKL--------------- 168 (614)
T ss_pred c------cc------cCCChhhcC---------------------------------CcCceeec---------------
Confidence 1 11 243211100 00000000
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCcchhhhcHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHH
Q 004888 512 EKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASF 591 (725)
Q Consensus 512 e~~~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~ 591 (725)
....|. |+--+-+..|||.|++++++.+ ..| -.++|+.|+++.+|
T Consensus 169 -------------------~~~~pg------Sd~a~e~AAAlAaas~vfk~~D--~~Y--------A~~lL~~Ak~ly~f 213 (614)
T PLN02340 169 -------------------DQNHPG------SDLAGETAAALAAASKAFKPYN--SSY--------SDLLLVHAKQLFSF 213 (614)
T ss_pred -------------------CCCCCc------cHHHHHHHHHHHHHHHhccCCC--HHH--------HHHHHHHHHHHHHH
Confidence 001122 2223777889999999998622 111 14679999999999
Q ss_pred HHHhccccCCCeEEEEecCCCC--CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004888 592 IRRHLYDEQTHRLQHSFRNGPS--KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQN 650 (725)
Q Consensus 592 l~~~l~d~~~G~l~~s~~~g~~--~~~~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~ 650 (725)
..++- |.+..+...+.. ...++- =.+++|.+.||++|||..|++.+.....
T Consensus 214 A~~~~-----g~y~~s~~~a~~~Y~ss~~~---DEl~WAAawLy~ATgd~~Yl~~~~~~~~ 266 (614)
T PLN02340 214 ADKFR-----GLYDDSIQNAKKFYTSSGYS---DELLWAAAWLYRATGDEYYLKYVVDNAV 266 (614)
T ss_pred HHhCC-----CCccCCCCccccCCCCCCcc---hHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 87642 211100001110 011222 3568888999999999999999887654
No 175
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=95.63 E-value=0.095 Score=58.17 Aligned_cols=110 Identities=21% Similarity=0.279 Sum_probs=81.2
Q ss_pred cccc-chHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcC
Q 004888 122 DWFA-WGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYG 200 (725)
Q Consensus 122 ~W~~-~~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g 200 (725)
.|.. ...+|++.||+.++..+|+|..+. .-..+|++.+|.|..|.+.+...||.|||+..... +.+|.+ +|.
T Consensus 2 lwfkGnipeAIa~aK~kkalfVVyI~gdd-E~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~a-----a~qFs~-IYp 74 (506)
T KOG2507|consen 2 LWFKGNIPEAIAEAKGKKALFVVYISGDD-EESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVA-----ATQFSA-IYP 74 (506)
T ss_pred cccccchHHHHHHhhcCCeEEEEEEecCc-hHhhHHhhccchhhhhhhhhhcceEEEEeccCchh-----hhhhhh-hcc
Confidence 3444 348999999998877666666654 45688999999999999999999999999987532 222222 246
Q ss_pred CCCcCcEEEecCCCCccccccccCCCCCCCcchHHHHHHHHHHHHh
Q 004888 201 GGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWD 246 (725)
Q Consensus 201 ~~G~P~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i~~~~~ 246 (725)
..-+|...|+.-.|.|+...+-+-. --++-.+|.++|.
T Consensus 75 ~v~vPs~ffIg~sGtpLevitg~v~--------adeL~~~i~Kv~~ 112 (506)
T KOG2507|consen 75 YVSVPSIFFIGFSGTPLEVITGFVT--------ADELASSIEKVWL 112 (506)
T ss_pred cccccceeeecCCCceeEEeecccc--------HHHHHHHHHHHHH
Confidence 7789999999999999986542221 2356677777776
No 176
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=95.52 E-value=0.017 Score=54.35 Aligned_cols=80 Identities=21% Similarity=0.235 Sum_probs=45.0
Q ss_pred HHHHHHHhhcCCcEEEEEec-------cCChhhHhhhhhccCCHHHHHHHh---cCcEEEEEcCCCCcc---hHHHHHHH
Q 004888 128 EEAFAEARKRDVPIFLSIGY-------STCHWCHVMEVESFEDEGVAKLLN---DWFVSIKVDREERPD---VDKVYMTY 194 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~-------~wC~~C~~Me~e~f~d~eVa~~ln---~~FV~VkvD~ee~pd---~~~~y~~~ 194 (725)
.++++...+.++||||.|.+ +||+.|..-+ |-|.+.++ ++.+.|.|.+..++. .+..|.+-
T Consensus 9 ~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~ae------p~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~ 82 (119)
T PF06110_consen 9 EKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAE------PVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTD 82 (119)
T ss_dssp HHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHH------HHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH-
T ss_pred HHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHH------HHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEc
Confidence 55566666788999999864 5999999987 45555554 356666665544321 12233221
Q ss_pred HHHhcCCCCcCcEEEecCCCC
Q 004888 195 VQALYGGGGWPLSVFLSPDLK 215 (725)
Q Consensus 195 ~q~~~g~~G~P~~vfl~pdG~ 215 (725)
-..+..++||.+-+...++
T Consensus 83 --p~~~l~~IPTLi~~~~~~r 101 (119)
T PF06110_consen 83 --PDLKLKGIPTLIRWETGER 101 (119)
T ss_dssp ---CC---SSSEEEECTSS-E
T ss_pred --ceeeeeecceEEEECCCCc
Confidence 0136679999998876544
No 177
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=95.46 E-value=0.13 Score=58.99 Aligned_cols=154 Identities=12% Similarity=0.079 Sum_probs=95.3
Q ss_pred hcHHHHHHHHHHHHHHh--hhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe--cC-CCCCCC--
Q 004888 544 SWNGLVISSFARASKIL--KSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF--RN-GPSKAP-- 616 (725)
Q Consensus 544 sWNal~I~aLa~A~~vl--~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~--~~-g~~~~~-- 616 (725)
.-+.+++.+|+-||.++ +| +.+|+.|+++++.|...| +..+|.-+... .. +.....
T Consensus 77 Et~iR~lGgLLSay~ls~~~d----------------~~lL~kA~~lad~Ll~aF-~t~~g~P~~~~n~~~~~~~~~~~~ 139 (452)
T PF01532_consen 77 ETTIRVLGGLLSAYDLSGEGD----------------PILLSKAVELADRLLPAF-DTPTGIPYPRVNLRTGGKNRWPGG 139 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHGGGG-SSSSS---SEEETTTCEEETTCCG
T ss_pred HhhhHhhhhhHHHHHHHhccc----------------hHHHHHHHHHHHHHHHhc-cCCCccccceeeecccCCCCCCCC
Confidence 34688899999999999 77 789999999999999888 43355433221 12 111111
Q ss_pred -CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc-cCCCcc---cccCCCCCccccccccCCCCCCCChHH
Q 004888 617 -GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLD-REGGGY---FNTTGEDPSVLLRVKEDHDGAEPSGNS 691 (725)
Q Consensus 617 -~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D-~~~Ggy---f~t~~~~~~~~~r~k~~~D~a~PS~Ns 691 (725)
..+.+.+-++.=+..|.++|||++|.+.|.++.+.+.+.--. +..|-+ .+.... ... .......+++
T Consensus 140 ~~~la~~gs~~lEf~~LS~lTgd~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~g--~~~------~~~~~~Ga~~ 211 (452)
T PF01532_consen 140 ESSLAEAGSLQLEFTRLSQLTGDPKYFDAADRIYDALWRSQNRSKIPGLFPNFIDPSTG--KWT------SSSISLGAGG 211 (452)
T ss_dssp EEEHHHHCSSHHHHHHHHHHHS-THHHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTTS---BS------STEE-SSTTT
T ss_pred cccccccccceechhHHHHHhhccHHHHHHHHHHHHHHHhhhccCCcccCcceecCCcC--ccc------ccccccCCCc
Confidence 134555667777889999999999999999999988773200 012322 221111 110 0111122222
Q ss_pred -HHHHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 004888 692 -VSVINLVRLASIVAGSKSDYYRQNAEHSLYLR 723 (725)
Q Consensus 692 -v~a~~LlrL~~~t~~~~~~~y~~~A~~~l~~~ 723 (725)
..-+.|++.+.++|+. ++.|++.=++.++.+
T Consensus 212 DS~YEYLlK~~lL~g~~-d~~~~~~~~~a~~~i 243 (452)
T PF01532_consen 212 DSFYEYLLKMYLLLGGT-DEQYRDMYDEAVDAI 243 (452)
T ss_dssp HHHHHHHHHHHHHTTTT-THHHHHHHHHHHHHH
T ss_pred chHHHhhhhhhhhcCcc-chHHHHHHHHHHHHH
Confidence 4688999999999943 367776666655543
No 178
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=95.45 E-value=1.7 Score=51.79 Aligned_cols=148 Identities=10% Similarity=0.089 Sum_probs=78.4
Q ss_pred cHHHHHHHHHHHHHHh---hhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcch
Q 004888 545 WNGLVISSFARASKIL---KSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDD 621 (725)
Q Consensus 545 WNal~I~aLa~A~~vl---~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~leD 621 (725)
=++++..||..|+++. |++. ...+|.+.|.++.+.+.+++|+++.|.|.+.+.+... ...+ |
T Consensus 415 t~a~~~aAL~~aa~lA~~lGd~~------------~a~~~~~~Ad~ik~~i~~~~w~~~~g~F~~~~~~~~~--~~~v-D 479 (616)
T TIGR01577 415 TASAVYGGLDAAAAVADKLGEKR------------LAQNWKKAAEFIKRAVEERFWLPERQVFAKGIKLMVL--DKTI-D 479 (616)
T ss_pred cHHHHHHHHHHHHHHHHHcCChH------------HHHHHHHHHHHHHHHHHHhccCCCCCEEEEeecCCCC--CCcc-c
Confidence 3577777777776654 4421 0267999999999999999999876777765543211 1122 2
Q ss_pred HHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCC--ChHHHHHHHH
Q 004888 622 YAFLISGLLDLYE--FGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEP--SGNSVSVINL 697 (725)
Q Consensus 622 yA~li~aLL~LYe--~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~P--S~Nsv~a~~L 697 (725)
-+.+...+ . +. --.|++.+.. .+.+.+.+..+.+||++.-..++ +.+..| -...-+|..+
T Consensus 480 aSlL~l~~-~-~g~l~~~Dpr~v~T----v~~I~~~L~~~~~ggi~RY~~D~----------y~~g~~w~i~T~wla~~~ 543 (616)
T TIGR01577 480 ISILGISV-P-FNLIAPDDERMVKM----AEAIEKHLTSPIVGGIKRYENDP----------YVGGNPWILTTLWLSQLY 543 (616)
T ss_pred HHHHhHHH-h-cCCCCCCChHHHHH----HHHHHHHhcccCCCeeeCCCCCC----------CCCCCcHHHHHHHHHHHH
Confidence 23221111 0 11 1235555544 44444555544455654332211 111123 2223467777
Q ss_pred HHHHHhhCCC---CchHHHHHHHHHHHHh
Q 004888 698 VRLASIVAGS---KSDYYRQNAEHSLYLR 723 (725)
Q Consensus 698 lrL~~~t~~~---~~~~y~~~A~~~l~~~ 723 (725)
.+++...... ....+.+.|+++|+.+
T Consensus 544 ~~~g~~~~~~~~~~~~~~~~~A~~ll~~~ 572 (616)
T TIGR01577 544 IKQGRILKALNHNGADIYLQKSKKLLKWV 572 (616)
T ss_pred HHhcccccccccchhhhHHHHHHHHHHHH
Confidence 7766654221 1135778888888754
No 179
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=95.43 E-value=0.021 Score=54.65 Aligned_cols=52 Identities=12% Similarity=0.075 Sum_probs=40.4
Q ss_pred HHHHHHHhc-CcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCccccc-cccC
Q 004888 164 EGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGG-TYFP 224 (725)
Q Consensus 164 ~eVa~~ln~-~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~~~-tY~p 224 (725)
+++++.+.. .+.++|||+++.+++...| |+.++|+++|+ .+|+++... ++.|
T Consensus 59 eELa~e~~~~~v~~akVDiD~~~~LA~~f--------gV~siPTLl~F-kdGk~v~~i~G~~~ 112 (132)
T PRK11509 59 GELLREFPDYTWQVAIADLEQSEAIGDRF--------GVFRFPATLVF-TGGNYRGVLNGIHP 112 (132)
T ss_pred HHHHHHhcCCceEEEEEECCCCHHHHHHc--------CCccCCEEEEE-ECCEEEEEEeCcCC
Confidence 466666652 4789999999999998887 99999999988 778888543 4445
No 180
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=95.42 E-value=0.27 Score=53.95 Aligned_cols=78 Identities=22% Similarity=0.224 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHH
Q 004888 550 ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGL 629 (725)
Q Consensus 550 I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~leDyA~li~aL 629 (725)
+.+|..+++++++ +++.+.|+++++.+.+.-.-..+.++.| |. +=.+.+|
T Consensus 230 ~~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~g~~~~~~~lCH----G~----------~G~~~~l 279 (343)
T cd04794 230 VYLLAKAYLVFKE----------------EQYLEAAIKCGELIWKRGLLKKGPGLCH----GI----------AGNAYAF 279 (343)
T ss_pred HHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHHhCCccCCCcccc----Cc----------cchHHHH
Confidence 4467788888887 6899999998887754311111123333 22 2236799
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q 004888 630 LDLYEFGSGTKWLVWAIELQNTQDELFL 657 (725)
Q Consensus 630 L~LYe~Tgd~~yL~~A~~L~~~~~~~F~ 657 (725)
+.+|+.|++++|+++|..+.+.+.+...
T Consensus 280 L~~~~~~~~~~~~~~a~~~~~~~~~~~~ 307 (343)
T cd04794 280 LLLYRLTGDLKYLYRACKFAEFLINYGF 307 (343)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHhcchh
Confidence 9999999999999999999999887643
No 181
>PLN02420 endoglucanase
Probab=95.42 E-value=0.9 Score=52.96 Aligned_cols=89 Identities=15% Similarity=0.190 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 004888 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 626 (725)
Q Consensus 547 al~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~leDyA~li 626 (725)
+-+..+||.|++++++.+ ..| -.++|+.|+++.+|..++- |.+-.....+.+.-......+-.++
T Consensus 190 a~~AAALA~AS~vfk~~D--~~Y--------A~~~L~~Ak~ly~fA~~~~-----g~y~~~~~~~~g~Y~s~s~y~DEl~ 254 (525)
T PLN02420 190 GETAAAMAAASIVFRSTN--PHY--------SHLLLHHAQQLFEFGDKYR-----GKYDESLKVVKSYYASVSGYMDELL 254 (525)
T ss_pred HHHHHHHHHHHHhcccCC--HHH--------HHHHHHHHHHHHHHHHhcC-----CccCCCCcccCCCCCCcCcccHHHH
Confidence 777889999999998632 111 1467889999888887531 2110000000000001111235778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 004888 627 SGLLDLYEFGSGTKWLVWAIELQN 650 (725)
Q Consensus 627 ~aLL~LYe~Tgd~~yL~~A~~L~~ 650 (725)
+|.+.||++|||..|++.|.+...
T Consensus 255 WAAawLY~ATgd~~Yl~~a~~~~~ 278 (525)
T PLN02420 255 WGATWLYRATDNEHYMSYVVDMAH 278 (525)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999998876543
No 182
>PLN02345 endoglucanase
Probab=95.42 E-value=0.62 Score=53.62 Aligned_cols=82 Identities=17% Similarity=0.224 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC--CCCCCcchHHH
Q 004888 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDDYAF 624 (725)
Q Consensus 547 al~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~--~~~~~leDyA~ 624 (725)
+-+..|||.|++++++.+ ..| -.++|+.|+++.+|..++- |.+..+..++.. ...++-| .
T Consensus 145 ~~~AAAlA~as~vfk~~D--~~Y--------A~~lL~~Ak~ly~fa~~~~-----g~y~~~~~~~~~~Y~s~~~~D---E 206 (469)
T PLN02345 145 AETAAAMAAASLVFKSSD--STY--------SDTLLKHAKQLFNFADKYR-----GSYSESIPEVQDYYNSTGYGD---E 206 (469)
T ss_pred HHHHHHHHHHHHHhccCC--HHH--------HHHHHHHHHHHHHHHHhCC-----CcccCCCCccCCCCCCccccc---H
Confidence 677889999999998632 111 1468999999999988752 111111000000 0112233 4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 004888 625 LISGLLDLYEFGSGTKWLVWAI 646 (725)
Q Consensus 625 li~aLL~LYe~Tgd~~yL~~A~ 646 (725)
++.|.+.||.+|||..|++.+.
T Consensus 207 l~WAAawLy~ATgd~~Yl~~~~ 228 (469)
T PLN02345 207 LLWAASWLYHATGDKTYLAYVT 228 (469)
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 6888899999999999999874
No 183
>PRK15000 peroxidase; Provisional
Probab=95.33 E-value=0.078 Score=54.09 Aligned_cols=98 Identities=13% Similarity=0.095 Sum_probs=55.2
Q ss_pred cCCcEEEEEec-cCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHH---------------------H
Q 004888 137 RDVPIFLSIGY-STCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMT---------------------Y 194 (725)
Q Consensus 137 e~KpI~l~~g~-~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~---------------------~ 194 (725)
.||+|+|.|+. +||..|..- -..|.+ -..++-++++..|-|..+.. ...+.+.+ .
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~E-l~~l~~-~~~~f~~~g~~vigvS~D~~-~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ 109 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSE-LIAFDK-RYEEFQKRGVEVVGVSFDSE-FVHNAWRNTPVDKGGIGPVKYAMVADVKRE 109 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHH-HHHHHH-HHHHHHHCCCEEEEEECCCH-HHHHHHHhhHHHhCCccccCceEEECCCcH
Confidence 58999999999 699999983 323331 22222234555555554421 11111100 0
Q ss_pred HHHhcCCC------CcCcEEEecCCCCccccccc-cCCCCCCCcchHHHHHHHHH
Q 004888 195 VQALYGGG------GWPLSVFLSPDLKPLMGGTY-FPPEDKYGRPGFKTILRKVK 242 (725)
Q Consensus 195 ~q~~~g~~------G~P~~vfl~pdG~~i~~~tY-~p~~~~~~~~~F~~~L~~i~ 242 (725)
+...+|+. +.|.++|+||+|++.+...+ .|.. ..+-++|+.+.
T Consensus 110 ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~g-----r~~~eilr~l~ 159 (200)
T PRK15000 110 IQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLG-----RNIDEMLRMVD 159 (200)
T ss_pred HHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCC-----CCHHHHHHHHH
Confidence 11123543 68999999999998875432 3332 25777776664
No 184
>PLN02308 endoglucanase
Probab=95.32 E-value=1 Score=52.18 Aligned_cols=85 Identities=13% Similarity=0.174 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCC-CC---CCCCCcchH
Q 004888 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG-PS---KAPGFLDDY 622 (725)
Q Consensus 547 al~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g-~~---~~~~~leDy 622 (725)
+.++.+||.|++++++.+ ..| -.++|+.|+++.+|..++= |.+....... .+ ...++.
T Consensus 175 ~~~AAAlA~as~vf~~~D--~~Y--------A~~lL~~Ak~ly~fa~~~~-----g~y~~~~~~~~~~~Y~~~s~~~--- 236 (492)
T PLN02308 175 GETAAALAAASIVFRKRD--PAY--------SRLLLDRAVRVFAFADKYR-----GAYSSSLHAAVCPFYCDFNGYQ--- 236 (492)
T ss_pred HHHHHHHHHHHHhccccC--HHH--------HHHHHHHHHHHHHHHHHcC-----CcccCCCCcccCCCcCCCCccc---
Confidence 778899999999998521 112 1468899999999987742 2111000000 00 001222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004888 623 AFLISGLLDLYEFGSGTKWLVWAIELQ 649 (725)
Q Consensus 623 A~li~aLL~LYe~Tgd~~yL~~A~~L~ 649 (725)
=.+++|...||.+|||..|++.+....
T Consensus 237 DEl~WAAawLy~ATgd~~Yl~~~~~~~ 263 (492)
T PLN02308 237 DELLWGAAWLHKASRRREYREYIVKNE 263 (492)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 456889999999999999999876643
No 185
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=95.27 E-value=0.057 Score=50.54 Aligned_cols=22 Identities=9% Similarity=-0.059 Sum_probs=19.0
Q ss_pred cCCcEEEEEe-ccCChhhHhhhh
Q 004888 137 RDVPIFLSIG-YSTCHWCHVMEV 158 (725)
Q Consensus 137 e~KpI~l~~g-~~wC~~C~~Me~ 158 (725)
.+|+++|.|+ +.||.+|.....
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~ 43 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELC 43 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHH
Confidence 6899999998 789999998753
No 186
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.018 Score=64.35 Aligned_cols=72 Identities=15% Similarity=0.191 Sum_probs=50.5
Q ss_pred HHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHh--cCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEe
Q 004888 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (725)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln--~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl 210 (725)
..+..+++.||.|+++||+.|++|+.+..+-+. .+. ......++|.+..+.+...+ ++.++|+.+|+
T Consensus 157 ~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~---~~~~~~~v~~~~~d~~~~~~~~~~~--------~v~~~Pt~~~f 225 (383)
T KOG0191|consen 157 TVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAK---LLKSKENVELGKIDATVHKSLASRL--------EVRGYPTLKLF 225 (383)
T ss_pred hhhccCcceEEEEeccccHHhhhcChHHHHHHH---HhccCcceEEEeeccchHHHHhhhh--------cccCCceEEEe
Confidence 356678889999999999999999755543333 343 46667778877444443333 78899999777
Q ss_pred cCCCC
Q 004888 211 SPDLK 215 (725)
Q Consensus 211 ~pdG~ 215 (725)
-++.+
T Consensus 226 ~~~~~ 230 (383)
T KOG0191|consen 226 PPGEE 230 (383)
T ss_pred cCCCc
Confidence 66555
No 187
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=95.16 E-value=1.9 Score=47.23 Aligned_cols=95 Identities=16% Similarity=-0.009 Sum_probs=62.4
Q ss_pred CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCChHHHHHH
Q 004888 616 PGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVI 695 (725)
Q Consensus 616 ~~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~ 695 (725)
.++..+.+=.+.+|+.++..++++++++.+.+..+...... . +.|.|.+...+.. ......--.|..=.+.
T Consensus 161 ~G~aHG~aGI~~~L~~~~~~~~~~~~~~~i~~~i~~~~~~~-~-~~g~w~~~~~~~~-------~~~~~~wChG~~Gi~~ 231 (343)
T cd04794 161 LGAAHGLAGILYILLQTPLFLLKPSLAPLIKRSLDYLLSLQ-F-PSGNFPSSLGNRK-------RDRLVQWCHGAPGIVY 231 (343)
T ss_pred cchhhhHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHHHhh-c-cCCCCCCccCCCC-------CCccccccCCCchHHH
Confidence 36666677677789999999999999999999999887763 3 3355543221110 0111111233334566
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHH
Q 004888 696 NLVRLASIVAGSKSDYYRQNAEHSLYL 722 (725)
Q Consensus 696 ~LlrL~~~t~~~~~~~y~~~A~~~l~~ 722 (725)
.+++++.++++ +.|.+.+++.+..
T Consensus 232 ~l~~~~~~~~~---~~~~~~~~~~~~~ 255 (343)
T cd04794 232 LLAKAYLVFKE---EQYLEAAIKCGEL 255 (343)
T ss_pred HHHHHHHHhCC---HHHHHHHHHHHHH
Confidence 77788888886 6898888887653
No 188
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=95.16 E-value=0.046 Score=51.91 Aligned_cols=79 Identities=14% Similarity=0.093 Sum_probs=42.2
Q ss_pred cC-CcEEEEEe-ccCChhhHhhhhhccCCHHHHHHHh-cCcEEEEEcCCCCcchHHHHHH----------------HHHH
Q 004888 137 RD-VPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMT----------------YVQA 197 (725)
Q Consensus 137 e~-KpI~l~~g-~~wC~~C~~Me~e~f~d~eVa~~ln-~~FV~VkvD~ee~pd~~~~y~~----------------~~q~ 197 (725)
.+ |+++|.|+ +.||+.|...- ..+ .++.+.+. +++..|-|..+. ++..+.|.+ ....
T Consensus 26 ~g~k~~vl~f~~~~~c~~C~~~~-~~l--~~~~~~~~~~~v~vi~vs~d~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 101 (149)
T cd03018 26 RGRKPVVLVFFPLAFTPVCTKEL-CAL--RDSLELFEAAGAEVLGISVDS-PFSLRAWAEENGLTFPLLSDFWPHGEVAK 101 (149)
T ss_pred cCCCeEEEEEeCCCCCccHHHHH-HHH--HHHHHHHHhCCCEEEEecCCC-HHHHHHHHHhcCCCceEecCCCchhHHHH
Confidence 35 88888876 99999998532 222 23333333 345555554432 222222211 0111
Q ss_pred hcCCC----Cc--CcEEEecCCCCcccc
Q 004888 198 LYGGG----GW--PLSVFLSPDLKPLMG 219 (725)
Q Consensus 198 ~~g~~----G~--P~~vfl~pdG~~i~~ 219 (725)
.+|+. |. |+++++|++|+..+.
T Consensus 102 ~~g~~~~~~~~~~~~~~lid~~G~v~~~ 129 (149)
T cd03018 102 AYGVFDEDLGVAERAVFVIDRDGIIRYA 129 (149)
T ss_pred HhCCccccCCCccceEEEECCCCEEEEE
Confidence 12433 33 488999999998764
No 189
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=94.95 E-value=0.079 Score=55.99 Aligned_cols=28 Identities=14% Similarity=0.082 Sum_probs=22.9
Q ss_pred cCCCCcCcEEEecCCCCccccccccCCC
Q 004888 199 YGGGGWPLSVFLSPDLKPLMGGTYFPPE 226 (725)
Q Consensus 199 ~g~~G~P~~vfl~pdG~~i~~~tY~p~~ 226 (725)
.|+.|+|++|+.|.+|++....+|.|++
T Consensus 215 lGv~GTPaiv~~d~~G~~~~v~G~~~~~ 242 (251)
T PRK11657 215 LGANATPAIYYMDKDGTLQQVVGLPDPA 242 (251)
T ss_pred cCCCCCCEEEEECCCCCEEEecCCCCHH
Confidence 4899999999999999876556677754
No 190
>PRK13190 putative peroxiredoxin; Provisional
Probab=94.94 E-value=0.13 Score=52.50 Aligned_cols=36 Identities=14% Similarity=0.029 Sum_probs=23.4
Q ss_pred CcCcEEEecCCCCccccccccCCCCCCCcchHHHHHHHHH
Q 004888 203 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (725)
Q Consensus 203 G~P~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i~ 242 (725)
+.|.++|++|+|++.+...|-.+.+ ..+-++|+.|.
T Consensus 116 ~~p~~fiId~~G~I~~~~~~~~~~g----r~~~ellr~l~ 151 (202)
T PRK13190 116 TVRGVFIIDPNQIVRWMIYYPAETG----RNIDEIIRITK 151 (202)
T ss_pred EEeEEEEECCCCEEEEEEEeCCCCC----CCHHHHHHHHH
Confidence 4799999999999886544333322 24556555554
No 191
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=94.74 E-value=6.1 Score=47.35 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=43.4
Q ss_pred CCeEEEEec-CCCCCCCCCchhHHHHHHHHHHHHHHHHccC--ChHHHHHHHHHHHHHHHhccCCCCceee
Q 004888 358 GGGFHRYSV-DERWHVPHFEKMLYDQGQLANVYLDAFSLTK--DVFYSYICRDILDYLRRDMIGPGGEIFS 425 (725)
Q Consensus 358 ~GGF~RYs~-D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~--d~~y~~vA~~~~~fl~~~m~~~~Ggfys 425 (725)
.||+- |+. +..|.+. -|-|..+.+++.+....+ ++.+.++++++++||++ ++.++|||.+
T Consensus 359 ~GGW~-fs~~~~~~pd~------d~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~-~Qn~dGgf~~ 421 (634)
T cd02892 359 KGGWA-FSTANQGYPDS------DDTAEALKALLRLQELPPFGEKVSRERLYDAVDWLLG-MQNSNGGFAA 421 (634)
T ss_pred CCCCC-CCCCCCCCCCc------CchHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHh-ccCCCCCEee
Confidence 56664 553 3344433 267888888888776553 56788999999999996 7899999854
No 192
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=94.68 E-value=1.5 Score=48.84 Aligned_cols=84 Identities=15% Similarity=0.038 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 004888 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 626 (725)
Q Consensus 547 al~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~leDyA~li 626 (725)
+=++.++..++++++| +++.+.|.++.+.+...... .+ ....+++-.+.+=.+
T Consensus 247 ~Gi~~~l~~~~~~~~~----------------~~~~~~a~~~~~~~~~~~~~--~~---------~~~~~~lChG~~G~~ 299 (382)
T cd04793 247 PGIARALQLAGKALDD----------------QKLQEAAEKILKAALKDKKQ--LS---------KLISPTLCHGLAGLL 299 (382)
T ss_pred HHHHHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHhChhh--hc---------cCCCCCcCccHHHHH
Confidence 3345677788888887 78999999998776643211 00 012234555567778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q 004888 627 SGLLDLYEFGSGTKWLVWAIELQNTQDELFL 657 (725)
Q Consensus 627 ~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~ 657 (725)
..|+.+|+.|++++|++.|..+.+.+.+.+-
T Consensus 300 ~~l~~~~~~~~~~~~~~~a~~~~~~~l~~~~ 330 (382)
T cd04793 300 FIFYLLYKDTNTNEFKSALEYLLNQIISSYS 330 (382)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999988764
No 193
>COG4833 Predicted glycosyl hydrolase [Carbohydrate transport and metabolism]
Probab=94.63 E-value=0.22 Score=52.63 Aligned_cols=123 Identities=18% Similarity=0.248 Sum_probs=81.3
Q ss_pred hhhccCCCCCCCcchhhhcHHHHHHHHHHHHHHhhhhhhhhcccCCCCC------C----ChHHHHHHHHHHHHHHHHhc
Q 004888 527 DVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVG------S----DRKEYMEVAESAASFIRRHL 596 (725)
Q Consensus 527 ~~R~~R~~P~lDdKiitsWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~------~----~~~~yl~~A~~~a~~l~~~l 596 (725)
.+|..+..|-+.+.|++.||-.+-.++..=.+. .-||.|.-| + ...++|+.|-++++||.+.+
T Consensus 110 gvr~~~alp~l~~~~v~Gw~D~~gGg~pWR~q~-------~f~N~P~NgPa~I~~ar~~~~~~krL~~AMK~~dWi~~~L 182 (377)
T COG4833 110 GVRRRRALPKLTNQFVEGWVDEDGGGIPWRKQD-------QFFNAPANGPAGIFLARYPDQYGKRLKRAMKMADWIDRTL 182 (377)
T ss_pred ceeccccchhHHHhhhhccccccCCcccccccc-------eeecCCCCCcceEEEeechHHHHHHHHHHHHHHHHHHhhc
Confidence 355677778888999999997775555443211 123333211 0 01359999999999999999
Q ss_pred cccCCCeEEEE---ecCCCCCC-CCCcchHHHH--HHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcc
Q 004888 597 YDEQTHRLQHS---FRNGPSKA-PGFLDDYAFL--ISGLLDLYE-FGSGTKWLVWAIELQNTQDELFL 657 (725)
Q Consensus 597 ~d~~~G~l~~s---~~~g~~~~-~~~leDyA~l--i~aLL~LYe-~Tgd~~yL~~A~~L~~~~~~~F~ 657 (725)
.|+ +|.++.. -.+|+... ..+..-+... +++-|.||+ .+.+.+|+..+.++.....+++.
T Consensus 183 id~-DGlV~DGi~~ledGt~lvr~~~tYcQGV~IGle~~L~Lr~~~a~~A~Y~a~~h~~vaav~~~mT 249 (377)
T COG4833 183 IDP-DGLVFDGIKALEDGTSLVRAQYTYCQGVVIGLETELALRTGPAARARYCARVHRLVAAVNEHMT 249 (377)
T ss_pred cCC-CcchhhhhhhhccCchhheeeccccceeEeechhhhhhhcCchHHHHHHHHHHHHHHHHHHhcC
Confidence 997 4544322 12344322 2334434333 458899999 88888999999999999999875
No 194
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.1 Score=47.88 Aligned_cols=72 Identities=18% Similarity=0.224 Sum_probs=47.2
Q ss_pred HHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEe
Q 004888 131 FAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (725)
Q Consensus 131 l~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl 210 (725)
...+-++++ .|-|.-+||++||.+ ++.|.+ ++-++..|.+|..++.. .+++++..++|+...|..+|
T Consensus 7 v~~~i~~~~--VVifSKs~C~~c~~~-k~ll~~------~~v~~~vvELD~~~~g~---eiq~~l~~~tg~~tvP~vFI- 73 (104)
T KOG1752|consen 7 VRKMISENP--VVIFSKSSCPYCHRA-KELLSD------LGVNPKVVELDEDEDGS---EIQKALKKLTGQRTVPNVFI- 73 (104)
T ss_pred HHHHhhcCC--EEEEECCcCchHHHH-HHHHHh------CCCCCEEEEccCCCCcH---HHHHHHHHhcCCCCCCEEEE-
Confidence 344444444 344666999999996 456665 66689999999876552 33444455678888887664
Q ss_pred cCCCCcc
Q 004888 211 SPDLKPL 217 (725)
Q Consensus 211 ~pdG~~i 217 (725)
.|+-|
T Consensus 74 --~Gk~i 78 (104)
T KOG1752|consen 74 --GGKFI 78 (104)
T ss_pred --CCEEE
Confidence 35544
No 195
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=94.21 E-value=0.12 Score=41.78 Aligned_cols=54 Identities=15% Similarity=0.173 Sum_probs=33.7
Q ss_pred EEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEE
Q 004888 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (725)
Q Consensus 143 l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vf 209 (725)
+-|+.+||++|+...+ ..+.. ++=...+|+++.++..+.+ ....|..+.|+.++
T Consensus 2 ~vy~~~~C~~C~~~~~-------~L~~~--~i~y~~~dv~~~~~~~~~l----~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 2 VVYTKPGCPYCKKAKE-------FLDEK--GIPYEEVDVDEDEEAREEL----KELSGVRTVPQVFI 55 (60)
T ss_dssp EEEESTTSHHHHHHHH-------HHHHT--TBEEEEEEGGGSHHHHHHH----HHHHSSSSSSEEEE
T ss_pred EEEEcCCCcCHHHHHH-------HHHHc--CCeeeEcccccchhHHHHH----HHHcCCCccCEEEE
Confidence 5688999999998763 22222 3333445665555443333 33448889999886
No 196
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=94.17 E-value=0.15 Score=41.46 Aligned_cols=62 Identities=18% Similarity=0.228 Sum_probs=37.2
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCcccc
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~~ 219 (725)
++-++++||++|+.+.. +.+..+ .-...+|++..++..+.+ +..+|...+|+.++ +|+.+.+
T Consensus 2 v~ly~~~~Cp~C~~~~~-------~L~~~~--i~~~~~di~~~~~~~~~l----~~~~~~~~~P~~~~---~~~~igg 63 (72)
T cd02066 2 VVVFSKSTCPYCKRAKR-------LLESLG--IEFEEIDILEDGELREEL----KELSGWPTVPQIFI---NGEFIGG 63 (72)
T ss_pred EEEEECCCCHHHHHHHH-------HHHHcC--CcEEEEECCCCHHHHHHH----HHHhCCCCcCEEEE---CCEEEec
Confidence 34678999999999863 222222 333456776666543333 33457778897754 5666644
No 197
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=94.08 E-value=0.1 Score=61.16 Aligned_cols=79 Identities=25% Similarity=0.359 Sum_probs=59.4
Q ss_pred hHHHHHHHhhcCCcEEEEE-eccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcC
Q 004888 127 GEEAFAEARKRDVPIFLSI-GYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (725)
Q Consensus 127 ~~eAl~~Ak~e~KpI~l~~-g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P 205 (725)
.++.+++.++-+||+-|.+ .+.+|++|....+.. .+++. .|.+...-.+|.++.|++.+.| ++.++|
T Consensus 464 ~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~---~~~~~-~~~~i~~~~i~~~~~~~~~~~~--------~v~~vP 531 (555)
T TIGR03143 464 GEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAA---QRIAS-LNPNVEAEMIDVSHFPDLKDEY--------GIMSVP 531 (555)
T ss_pred CHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHH---HHHHH-hCCCceEEEEECcccHHHHHhC--------CceecC
Confidence 4788888899999997765 799999999876433 23332 3446777778999999988777 888999
Q ss_pred cEEEecCCCCccccc
Q 004888 206 LSVFLSPDLKPLMGG 220 (725)
Q Consensus 206 ~~vfl~pdG~~i~~~ 220 (725)
++++ ||+.++.|
T Consensus 532 ~~~i---~~~~~~~G 543 (555)
T TIGR03143 532 AIVV---DDQQVYFG 543 (555)
T ss_pred EEEE---CCEEEEee
Confidence 9996 46666543
No 198
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=94.00 E-value=0.18 Score=52.77 Aligned_cols=32 Identities=13% Similarity=0.257 Sum_probs=25.4
Q ss_pred hhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc
Q 004888 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND 172 (725)
Q Consensus 135 k~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~ 172 (725)
..++|..++.|+-..|++||++++ ++.++.+.
T Consensus 104 ~~~~k~~I~vFtDp~CpyCkkl~~------~l~~~~~~ 135 (232)
T PRK10877 104 APQEKHVITVFTDITCGYCHKLHE------QMKDYNAL 135 (232)
T ss_pred CCCCCEEEEEEECCCChHHHHHHH------HHHHHhcC
Confidence 457888999999999999999984 56665543
No 199
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=93.99 E-value=0.21 Score=45.16 Aligned_cols=63 Identities=19% Similarity=0.210 Sum_probs=38.1
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCcc
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i 217 (725)
++-|+.+||++|+.+.+ +.+-++-.|..|.|| +.|+.. .+++.+...+|...+|.. |++ |+.|
T Consensus 10 Vvvysk~~Cp~C~~ak~-------~L~~~~i~~~~vdid--~~~~~~-~~~~~l~~~tg~~tvP~V-fi~--g~~i 72 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKR-------LLLTLGVNPAVHEID--KEPAGK-DIENALSRLGCSPAVPAV-FVG--GKLV 72 (99)
T ss_pred EEEEECCCCHHHHHHHH-------HHHHcCCCCEEEEcC--CCccHH-HHHHHHHHhcCCCCcCeE-EEC--CEEE
Confidence 55678899999999874 333344456554444 455543 233444445677788986 443 5555
No 200
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=93.90 E-value=0.19 Score=58.43 Aligned_cols=94 Identities=15% Similarity=0.150 Sum_probs=66.4
Q ss_pred CCChhhhcc---cCCCCccccchHHHHHHHhhcCCcE-EEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCC
Q 004888 108 EHSPYLLQH---AHNPVDWFAWGEEAFAEARKRDVPI-FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE 183 (725)
Q Consensus 108 e~spyl~~h---a~~~V~W~~~~~eAl~~Ak~e~KpI-~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee 183 (725)
|=+++++.- +..+.. -.++.+++.++-+||+ +..|.+.+|++|...-+ .+ .++ +..|.+...-.+|..+
T Consensus 85 Ef~s~i~~i~~~~~~~~~---l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~-~~--~~~-a~~~~~i~~~~id~~~ 157 (517)
T PRK15317 85 EFTSLVLALLQVGGHPPK---LDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQ-AL--NLM-AVLNPNITHTMIDGAL 157 (517)
T ss_pred HHHHHHHHHHHhcCCCCC---CCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHH-HH--HHH-HHhCCCceEEEEEchh
Confidence 777776632 333332 2488889999999998 55689999999996432 33 233 3357777777789999
Q ss_pred CcchHHHHHHHHHHhcCCCCcCcEEEecCCCCcccc
Q 004888 184 RPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 184 ~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~~ 219 (725)
.|++...| ++.++|++++ +|+.++.
T Consensus 158 ~~~~~~~~--------~v~~VP~~~i---~~~~~~~ 182 (517)
T PRK15317 158 FQDEVEAR--------NIMAVPTVFL---NGEEFGQ 182 (517)
T ss_pred CHhHHHhc--------CCcccCEEEE---CCcEEEe
Confidence 99998877 7789999986 4455543
No 201
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=93.87 E-value=0.34 Score=42.07 Aligned_cols=66 Identities=18% Similarity=0.166 Sum_probs=36.5
Q ss_pred EEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCC--CCcCcEEEecCCCCcc
Q 004888 141 IFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGG--GGWPLSVFLSPDLKPL 217 (725)
Q Consensus 141 I~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~--~G~P~~vfl~pdG~~i 217 (725)
-++.++.+||++|+...+ .++. +.... .++-...+|+++.+...+.. ....+. ..+|++++ +|+.+
T Consensus 2 ~v~iy~~~~C~~C~~a~~-~L~~--l~~~~-~~i~~~~idi~~~~~~~~el----~~~~~~~~~~vP~ifi---~g~~i 69 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKE-LAEK--LSEER-DDFDYRYVDIHAEGISKADL----EKTVGKPVETVPQIFV---DQKHI 69 (85)
T ss_pred EEEEEeCCCChhHHHHHH-HHHh--hcccc-cCCcEEEEECCCChHHHHHH----HHHHCCCCCcCCEEEE---CCEEE
Confidence 367789999999998763 2211 00001 25666667776554222222 122243 57899763 56665
No 202
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=93.80 E-value=0.19 Score=47.40 Aligned_cols=70 Identities=17% Similarity=0.272 Sum_probs=40.3
Q ss_pred cCCcEEEE-EeccCChhhHhhhhhccCCHHHHHHHh-cCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCC
Q 004888 137 RDVPIFLS-IGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (725)
Q Consensus 137 e~KpI~l~-~g~~wC~~C~~Me~e~f~d~eVa~~ln-~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG 214 (725)
.+|+++|. |.+.||+.|+..-. .++ ++.+.+. +++..|-|..+..... ..| .+ ..++|.-++.||++
T Consensus 22 ~~~~~vl~f~~~~~Cp~C~~~~~-~l~--~~~~~~~~~~v~vv~V~~~~~~~~-~~~---~~----~~~~~~p~~~D~~~ 90 (149)
T cd02970 22 GEGPVVVVFYRGFGCPFCREYLR-ALS--KLLPELDALGVELVAVGPESPEKL-EAF---DK----GKFLPFPVYADPDR 90 (149)
T ss_pred cCCCEEEEEECCCCChhHHHHHH-HHH--HHHHHHHhcCeEEEEEeCCCHHHH-HHH---HH----hcCCCCeEEECCch
Confidence 34565555 56999999997542 221 2333332 3566777766543222 222 22 23677788999997
Q ss_pred Ccc
Q 004888 215 KPL 217 (725)
Q Consensus 215 ~~i 217 (725)
+..
T Consensus 91 ~~~ 93 (149)
T cd02970 91 KLY 93 (149)
T ss_pred hHH
Confidence 754
No 203
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=93.71 E-value=0.32 Score=51.82 Aligned_cols=98 Identities=15% Similarity=0.096 Sum_probs=51.5
Q ss_pred cCCcEEEEEe-ccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHH----------------------HH
Q 004888 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY----------------------MT 193 (725)
Q Consensus 137 e~KpI~l~~g-~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y----------------------~~ 193 (725)
.+|+|+|.|+ ++||+.|.. |--.|. ....++-++++..|=|..+. +...+.+ .+
T Consensus 97 kgk~vVL~FyPa~ftpvCt~-El~~l~-~~~~ef~~~gv~VigIS~Ds-~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~ 173 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPS-ELLGFS-ERLKEFEERGVKVLGVSVDS-PFSHKAWKELDVRQGGVSPLKFPLFSDISRE 173 (261)
T ss_pred CCCeEEEEEECCCCCCCCHH-HHHHHH-HHHHHHHHCCCEEEEEECCC-HHHHHHHHhhhhhhccccCcceEEEEcCChH
Confidence 4788888887 899999997 333332 11122222334444443332 1111111 11
Q ss_pred HHHHhcCCC-----CcCcEEEecCCCCccccccccCCCCCCCcchHHHHHHHHH
Q 004888 194 YVQALYGGG-----GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (725)
Q Consensus 194 ~~q~~~g~~-----G~P~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i~ 242 (725)
..+. +|+. ..|.++++||+|++.+...|-.+-+ ...-++|+.|.
T Consensus 174 iaka-yGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~g----r~v~eiLr~l~ 222 (261)
T PTZ00137 174 VSKS-FGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLG----RSVDETLRLFD 222 (261)
T ss_pred HHHH-cCCCCcCCceecEEEEECCCCEEEEEEEeCCCCC----CCHHHHHHHHH
Confidence 1122 3542 4799999999999987643322221 25566665543
No 204
>PF13728 TraF: F plasmid transfer operon protein
Probab=93.68 E-value=0.23 Score=51.30 Aligned_cols=74 Identities=16% Similarity=0.202 Sum_probs=46.8
Q ss_pred CCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCC--cchHHHH--HHHHHHhcCCCCcCcEEEecC
Q 004888 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREER--PDVDKVY--MTYVQALYGGGGWPLSVFLSP 212 (725)
Q Consensus 138 ~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~--pd~~~~y--~~~~q~~~g~~G~P~~vfl~p 212 (725)
++-=|+.|+.+.|+.|+.+. |-|..+-++ +|-.+-|+.+.. |.+.... ....+. .|+.-+|++++++|
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~------pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~-l~v~~~Pal~Lv~~ 192 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQA------PILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKR-LGVKVTPALFLVNP 192 (215)
T ss_pred hCeEEEEEEcCCCchhHHHH------HHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHH-cCCCcCCEEEEEEC
Confidence 55568889999999999998 556555555 466666666542 1110000 001112 38889999999999
Q ss_pred CCCccc
Q 004888 213 DLKPLM 218 (725)
Q Consensus 213 dG~~i~ 218 (725)
+++.+.
T Consensus 193 ~~~~~~ 198 (215)
T PF13728_consen 193 NTKKWY 198 (215)
T ss_pred CCCeEE
Confidence 885443
No 205
>PRK13599 putative peroxiredoxin; Provisional
Probab=93.63 E-value=0.19 Score=51.92 Aligned_cols=37 Identities=19% Similarity=0.155 Sum_probs=25.1
Q ss_pred CcCcEEEecCCCCccccccccCCCCCCCcchHHHHHHHHHH
Q 004888 203 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 243 (725)
Q Consensus 203 G~P~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i~~ 243 (725)
..|+++|+||+|++..... .|... + ..+-++|+.|..
T Consensus 118 ~~R~tfIID~dG~Ir~~~~-~p~~~--g-r~~~eilr~l~~ 154 (215)
T PRK13599 118 TVRAVFIVDDKGTIRLIMY-YPQEV--G-RNVDEILRALKA 154 (215)
T ss_pred eeeEEEEECCCCEEEEEEE-cCCCC--C-CCHHHHHHHHHH
Confidence 5799999999999887633 34221 2 367777776654
No 206
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=93.45 E-value=15 Score=44.15 Aligned_cols=115 Identities=18% Similarity=0.169 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHhhccccCCCCCCCCCCCChhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCe
Q 004888 281 PQNALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGG 360 (725)
Q Consensus 281 ~~~~~~~~~~~l~~~~D~~~GGfg~apKFP~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~ma~gGi~D~v~GG 360 (725)
.+.+++++.+.|... |...||+|.. |.+..+..|--+.. |. ...+. +.+.|+.+..= +..+.+|+
T Consensus 234 r~~a~~~~~~~i~~~-q~~~g~~~~~---~~~~~l~~lal~~~-----g~-~~~~~----~~~~l~~l~~~-~~~~~~g~ 298 (634)
T cd02892 234 RRKALRKAYEWILYR-DENTGYLGII---PPPKANNMLALWVL-----GY-PDSPA----FKRHLERIDDF-LWLGPEGM 298 (634)
T ss_pred HHHHHHHHHHHHHHH-hcCCCceeee---ehHHHHHHHHHHHc-----CC-CCCHH----HHHHHHHHHhc-EEEecCCc
Confidence 456677777777655 7778999884 33333333222221 10 11222 33334443321 22223566
Q ss_pred EEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhcc-CCCCc
Q 004888 361 FHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMI-GPGGE 422 (725)
Q Consensus 361 F~RYs~D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~-~~~Gg 422 (725)
++. ..+ .--++|.|+.+.++.++... +.+....+++++||.+.=. ++.|.
T Consensus 299 ~~~-~~~--------~s~~wDTala~~AL~~ag~~---~~~~~~l~ka~~wL~~~Q~~~~~gd 349 (634)
T cd02892 299 KMC-QTN--------GSQVWDTALAVQALLEAGLA---PEFDPALKKALDWLLESQILDNPGD 349 (634)
T ss_pred EEE-cCC--------CCchHHHHHHHHHHHHcCCC---ccchHHHHHHHHHHHHHHcCCCCCc
Confidence 543 111 11277999999999987532 3677889999999987432 44453
No 207
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=93.35 E-value=0.33 Score=43.71 Aligned_cols=71 Identities=17% Similarity=0.228 Sum_probs=39.1
Q ss_pred HHHHHhhcCCcEEEEE-e---ccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcC
Q 004888 130 AFAEARKRDVPIFLSI-G---YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (725)
Q Consensus 130 Al~~Ak~e~KpI~l~~-g---~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P 205 (725)
.+++.-+++ +|+|+. | ++||+||+...+ .| +-++-.|. .+|+++++++.+ .+...+|....|
T Consensus 4 ~v~~~i~~~-~Vvvf~kg~~~~~~Cp~C~~ak~-lL------~~~~i~~~--~~di~~~~~~~~----~l~~~tg~~tvP 69 (97)
T TIGR00365 4 RIKEQIKEN-PVVLYMKGTPQFPQCGFSARAVQ-IL------KACGVPFA--YVNVLEDPEIRQ----GIKEYSNWPTIP 69 (97)
T ss_pred HHHHHhccC-CEEEEEccCCCCCCCchHHHHHH-HH------HHcCCCEE--EEECCCCHHHHH----HHHHHhCCCCCC
Confidence 344555554 555555 3 389999998752 22 22333454 456665564433 233345666778
Q ss_pred cEEEecCCCCcc
Q 004888 206 LSVFLSPDLKPL 217 (725)
Q Consensus 206 ~~vfl~pdG~~i 217 (725)
..+ ++ |+.|
T Consensus 70 ~vf-i~--g~~i 78 (97)
T TIGR00365 70 QLY-VK--GEFV 78 (97)
T ss_pred EEE-EC--CEEE
Confidence 764 54 5554
No 208
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=93.25 E-value=0.37 Score=42.26 Aligned_cols=62 Identities=18% Similarity=0.168 Sum_probs=34.0
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhc---CcEEEEEcCCCCcchHHHHHHHHHHhcCC--CCcCcEEEecCCCCc
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGG--GGWPLSVFLSPDLKP 216 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~---~FV~VkvD~ee~pd~~~~y~~~~q~~~g~--~G~P~~vfl~pdG~~ 216 (725)
++-++.+||++|+.+.+ +.+.+.. .+....+|.++.....+.. ...+|. ...|..+ + +|+.
T Consensus 2 V~vys~~~Cp~C~~ak~-------~L~~~~~~~~~i~~~~idi~~~~~~~~~l----~~~~g~~~~tVP~if-i--~g~~ 67 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQ-------LAEKLAIERADFEFRYIDIHAEGISKADL----EKTVGKPVETVPQIF-V--DEKH 67 (86)
T ss_pred EEEEeCCCCccHHHHHH-------HHHHhCcccCCCcEEEEECCCCHHHHHHH----HHHhCCCCCCcCeEE-E--CCEE
Confidence 45678999999999863 2222211 3455556665433212211 223354 5789885 4 4555
Q ss_pred c
Q 004888 217 L 217 (725)
Q Consensus 217 i 217 (725)
+
T Consensus 68 i 68 (86)
T TIGR02183 68 V 68 (86)
T ss_pred e
Confidence 5
No 209
>PHA03050 glutaredoxin; Provisional
Probab=93.23 E-value=0.38 Score=44.33 Aligned_cols=65 Identities=11% Similarity=0.193 Sum_probs=36.6
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCC-CcchHHHHHHHHHHhcCCCCcCcEEEecCCCCcc
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE-RPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee-~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i 217 (725)
++-|..+||+||++..+ .|++-.|. ...|..+.||... .++ ....+...+|...+|..+ ++ |+.|
T Consensus 15 V~vys~~~CPyC~~ak~-~L~~~~i~---~~~~~~i~i~~~~~~~~----~~~~l~~~tG~~tVP~If-I~--g~~i 80 (108)
T PHA03050 15 VTIFVKFTCPFCRNALD-ILNKFSFK---RGAYEIVDIKEFKPENE----LRDYFEQITGGRTVPRIF-FG--KTSI 80 (108)
T ss_pred EEEEECCCChHHHHHHH-HHHHcCCC---cCCcEEEECCCCCCCHH----HHHHHHHHcCCCCcCEEE-EC--CEEE
Confidence 66789999999998752 22221110 0145566665321 222 233344556888899985 43 5555
No 210
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=93.20 E-value=0.15 Score=51.67 Aligned_cols=80 Identities=14% Similarity=0.056 Sum_probs=43.8
Q ss_pred cCCcEEEEEec-cCChhhHhhhhhccCCHHHHHHHh-cC--cEEEEEcCCCC-cch--HHH-------H---------HH
Q 004888 137 RDVPIFLSIGY-STCHWCHVMEVESFEDEGVAKLLN-DW--FVSIKVDREER-PDV--DKV-------Y---------MT 193 (725)
Q Consensus 137 e~KpI~l~~g~-~wC~~C~~Me~e~f~d~eVa~~ln-~~--FV~VkvD~ee~-pd~--~~~-------y---------~~ 193 (725)
.||+++|.|+. +||.+|..-.. .| .+.++.+. ++ +|.|-+|-... +.- ... + ++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~-~l--~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ 111 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEII-QF--SDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKS 111 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHH-HH--HHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhH
Confidence 58999999984 88999986432 22 23333333 23 45555543211 000 000 0 11
Q ss_pred HHHHhcCCC----C--cCcEEEecCCCCccccc
Q 004888 194 YVQALYGGG----G--WPLSVFLSPDLKPLMGG 220 (725)
Q Consensus 194 ~~q~~~g~~----G--~P~~vfl~pdG~~i~~~ 220 (725)
..+ .+|+. | +|.++|+||+|++....
T Consensus 112 ia~-~ygv~~~~~g~~~r~~fiID~~G~i~~~~ 143 (199)
T PTZ00253 112 IAR-SYGVLEEEQGVAYRGLFIIDPKGMLRQIT 143 (199)
T ss_pred HHH-HcCCcccCCCceEEEEEEECCCCEEEEEE
Confidence 112 23542 3 68999999999987653
No 211
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=93.19 E-value=0.25 Score=41.60 Aligned_cols=55 Identities=13% Similarity=0.171 Sum_probs=33.3
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEE
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vf 209 (725)
++-++.+||++|++..+ +.+..+-.|. .+|+++.++..+.+ +.++|....|..+|
T Consensus 3 v~ly~~~~C~~C~ka~~-------~L~~~gi~~~--~~di~~~~~~~~el----~~~~g~~~vP~v~i 57 (73)
T cd03027 3 VTIYSRLGCEDCTAVRL-------FLREKGLPYV--EINIDIFPERKAEL----EERTGSSVVPQIFF 57 (73)
T ss_pred EEEEecCCChhHHHHHH-------HHHHCCCceE--EEECCCCHHHHHHH----HHHhCCCCcCEEEE
Confidence 45678899999998752 2222332344 44666666544433 33457778888753
No 212
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=92.76 E-value=0.34 Score=48.85 Aligned_cols=77 Identities=17% Similarity=0.226 Sum_probs=45.2
Q ss_pred HHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHh-cCcEEEEEcCCC----CcchHHHHHHHHHHhcCCCCcCc
Q 004888 132 AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREE----RPDVDKVYMTYVQALYGGGGWPL 206 (725)
Q Consensus 132 ~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln-~~FV~VkvD~ee----~pd~~~~y~~~~q~~~g~~G~P~ 206 (725)
..+.=.||+|+|.|+|+||+.|+.|.. + .++.+... +.|+.|=+..++ .|+-.....++++.- .|++.
T Consensus 19 ~Ls~~~GKvvLVvf~AS~C~~~~q~~~--L--~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~---~g~~F 91 (183)
T PRK10606 19 TLEKYAGNVLLIVNVASKCGLTPQYEQ--L--ENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTT---WGVTF 91 (183)
T ss_pred eHHHhCCCEEEEEEEeCCCCCcHHHHH--H--HHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHc---cCCCc
Confidence 344446899999999999999987642 1 13333333 368888886642 233223344444321 24444
Q ss_pred EEE--ecCCCC
Q 004888 207 SVF--LSPDLK 215 (725)
Q Consensus 207 ~vf--l~pdG~ 215 (725)
-++ ++-+|.
T Consensus 92 pv~~k~dvnG~ 102 (183)
T PRK10606 92 PMFSKIEVNGE 102 (183)
T ss_pred eeEEEEccCCC
Confidence 455 676665
No 213
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=92.67 E-value=0.25 Score=42.41 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=36.5
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCcccc
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~~ 219 (725)
++-++.+||++|+...+ .+ +..+=.|..| |++++++... + ...+|...+|.+++ +|+.+.+
T Consensus 10 V~ly~~~~Cp~C~~ak~-~L------~~~gi~y~~i--di~~~~~~~~-~----~~~~g~~~vP~i~i---~g~~igG 70 (79)
T TIGR02190 10 VVVFTKPGCPFCAKAKA-TL------KEKGYDFEEI--PLGNDARGRS-L----RAVTGATTVPQVFI---GGKLIGG 70 (79)
T ss_pred EEEEECCCCHhHHHHHH-HH------HHcCCCcEEE--ECCCChHHHH-H----HHHHCCCCcCeEEE---CCEEEcC
Confidence 66788999999999863 22 2334356654 4444433221 1 22357888999864 5665533
No 214
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=92.65 E-value=0.48 Score=53.93 Aligned_cols=141 Identities=18% Similarity=0.259 Sum_probs=78.4
Q ss_pred HHHHhcCCCHHHHHH----HHHHHHHHHHhhhccCCCCCCC-cchhhhcH--------------------HHHHHHHHHH
Q 004888 502 ASASKLGMPLEKYLN----ILGECRRKLFDVRSKRPRPHLD-DKVIVSWN--------------------GLVISSFARA 556 (725)
Q Consensus 502 ~~a~~~g~~~e~~~~----~l~~~r~kL~~~R~~R~~P~lD-dKiitsWN--------------------al~I~aLa~A 556 (725)
++++++|...+++.+ -|+...+.-++..++-++|.+- -+-+|..- +-.+.++++|
T Consensus 317 ~l~~~lG~~~~~~l~W~i~gL~a~~~yAYd~~~N~~~PM~~dG~dltgy~l~RdGYYG~KGtvl~~~p~~~~yll~~vra 396 (557)
T PF06917_consen 317 ELARQLGQDDKEMLTWAIDGLKAYYRYAYDEENNEIRPMWNDGQDLTGYRLPRDGYYGKKGTVLKPFPADPDYLLPYVRA 396 (557)
T ss_dssp HHHHHTGGGGHHHHHHHHHHHHHHHHHHEETTTTEE--EETTSEB-TTEE-SS-BTTB-TT-EE--EE--HHHHHHHHHH
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHHhhccCCCceeecccCCcCCcCcccccccccCCCCCeeccccCchhHhHHHHHH
Confidence 467777766655543 3444455666666666777543 23233221 3347799999
Q ss_pred HHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHc
Q 004888 557 SKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFG 636 (725)
Q Consensus 557 ~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~leDyA~li~aLL~LYe~T 636 (725)
+++.+| +..-..+..++. ++-- |-+-.....+.........+..+++.|+|+||++|
T Consensus 397 ~~~s~D----------------~~Lw~~~~~m~~----~~gL---Gdig~~~~~~~~~~~~~~~~sp~~L~allEL~~at 453 (557)
T PF06917_consen 397 YRLSRD----------------PELWDLARTMAH----HFGL---GDIGNAAGKEPRVNMQTDNASPYLLFALLELYQAT 453 (557)
T ss_dssp HHHS------------------HHHHHHHHHHHH----HTT----EE-TTBTTBS-EE-TT-----HHHHHHHHHHHHHH
T ss_pred HHcCCC----------------HHHHHHHHHHHh----hcCc---ccccCccccccccccCCCCCCHHHHHHHHHHHHHh
Confidence 999888 567777777764 2210 11100000111112233455688999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHccccCCCcccccC
Q 004888 637 SGTKWLVWAIELQNTQDELFLDREGGGYFNTT 668 (725)
Q Consensus 637 gd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~ 668 (725)
++++|++.|..+.+.+.++-++ .|+|-.+
T Consensus 454 q~~~~l~lA~~~g~~l~~~~~~---~GlF~~~ 482 (557)
T PF06917_consen 454 QDARYLELADQVGENLFEQHFH---RGLFVAS 482 (557)
T ss_dssp --HHHHHHHHHHHHHHHHHHEE---TTEE-SS
T ss_pred CCHHHHHHHHHHHHHHHHHHcc---CceecCC
Confidence 9999999999999998887665 3455433
No 215
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=92.53 E-value=0.46 Score=41.99 Aligned_cols=64 Identities=14% Similarity=0.186 Sum_probs=36.7
Q ss_pred CCcEEEEEe----ccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCC
Q 004888 138 DVPIFLSIG----YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (725)
Q Consensus 138 ~KpI~l~~g----~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pd 213 (725)
++||+|+.. .+||+||+...+ +.+-.+-.|..+ |+++.+++ +..+...+|...+|.. |++
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~-------~L~~~~i~y~~i--dv~~~~~~----~~~l~~~~g~~tvP~v-fi~-- 70 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQ-------ILNQLGVDFGTF--DILEDEEV----RQGLKEYSNWPTFPQL-YVN-- 70 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHH-------HHHHcCCCeEEE--EcCCCHHH----HHHHHHHhCCCCCCEE-EEC--
Confidence 356666654 379999998752 222223344444 44444543 3344455677888986 554
Q ss_pred CCcc
Q 004888 214 LKPL 217 (725)
Q Consensus 214 G~~i 217 (725)
|+.|
T Consensus 71 g~~i 74 (90)
T cd03028 71 GELV 74 (90)
T ss_pred CEEE
Confidence 5554
No 216
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=92.53 E-value=11 Score=42.05 Aligned_cols=113 Identities=15% Similarity=0.059 Sum_probs=69.5
Q ss_pred HHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCC---cccCCCeEEEEec---CCCCCC---------CCCchhHH
Q 004888 316 QMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGI---HDHVGGGFHRYSV---DERWHV---------PHFEKMLY 380 (725)
Q Consensus 316 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~ma~gGi---~D~v~GGF~RYs~---D~~W~v---------PHFEKMLy 380 (725)
.++-.+.+.++| ..--++....+...|+.+..|.- +-+...||...-. ...|.. |.--|-+-
T Consensus 91 ~~l~~Y~~~t~D---~~~l~~~~~~i~~il~~~~~g~~~~~~~d~~~gl~~~~~~~~~~tWmD~~~~g~~~tpr~g~~vE 167 (370)
T PF06202_consen 91 IALQEYYRWTGD---YSFLRELYPAIEEILEWYADGTDFGIRVDPEDGLIYSGNGLNNQTWMDARNDGRPVTPRDGAAVE 167 (370)
T ss_pred HHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHhCCCCccccccCCCeeecCCCCCCCCccccccCCccccCCCCcchH
Confidence 344445555443 22224555667778888888644 1222467876433 466753 22224444
Q ss_pred HHHHHHHHHHHHHHcc---CC---hHHHHHHHHHHHHHHHhccCCCCceee-eccCCC
Q 004888 381 DQGQLANVYLDAFSLT---KD---VFYSYICRDILDYLRRDMIGPGGEIFS-AEDADS 431 (725)
Q Consensus 381 DNA~Ll~~ya~Ay~~t---~d---~~y~~vA~~~~~fl~~~m~~~~Ggfys-a~DADs 431 (725)
-||+...++..+..+. ++ ..|.+.|+++-+=+.+.||++++|+|. ++|.+.
T Consensus 168 Iqal~y~AL~~~~~la~~~~~~~a~~~~~~A~~lk~~F~~~FW~~~~g~~~d~ld~~~ 225 (370)
T PF06202_consen 168 IQALWYNALRFAAELAEKFGDELAARYREWAERLKESFEKRFWDEDRGYYADALDGDK 225 (370)
T ss_pred HHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEecCCC
Confidence 4888877765544433 23 478899999999889999999877776 766643
No 217
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=92.42 E-value=0.24 Score=41.66 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=31.5
Q ss_pred EEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEE
Q 004888 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (725)
Q Consensus 143 l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vf 209 (725)
.-++.++|++|+...+ .+ +..+-.|.. +|+++.|+....+ .. .|..+.|.+++
T Consensus 2 ~ly~~~~Cp~C~~ak~-~L------~~~~i~~~~--~di~~~~~~~~~~----~~-~g~~~vP~v~~ 54 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKK-AL------EEHGIAFEE--INIDEQPEAIDYV----KA-QGFRQVPVIVA 54 (72)
T ss_pred EEEeCCCCHHHHHHHH-HH------HHCCCceEE--EECCCCHHHHHHH----HH-cCCcccCEEEE
Confidence 4578899999999763 22 222223443 5666566554433 22 27778999764
No 218
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=92.23 E-value=0.34 Score=45.74 Aligned_cols=66 Identities=23% Similarity=0.272 Sum_probs=50.5
Q ss_pred hhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEE-EcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecC
Q 004888 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIK-VDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP 212 (725)
Q Consensus 135 k~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~Vk-vD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~p 212 (725)
-.+.|.|+|-||-+|=+-|-.|+. +++ .+++.+. ||+.|. ||+++-|+..+.| +....|+++|+=-
T Consensus 20 ~t~~rlvViRFGr~~Dp~C~~mD~-~L~--~i~~~vs-nfa~IylvdideV~~~~~~~--------~l~~p~tvmfFfn 86 (142)
T KOG3414|consen 20 STEERLVVIRFGRDWDPTCMKMDE-LLS--SIAEDVS-NFAVIYLVDIDEVPDFVKMY--------ELYDPPTVMFFFN 86 (142)
T ss_pred cccceEEEEEecCCCCchHhhHHH-HHH--HHHHHHh-hceEEEEEecchhhhhhhhh--------cccCCceEEEEEc
Confidence 467789999999999999999984 443 5666665 677665 7999999887765 6667788877643
No 219
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=92.18 E-value=0.43 Score=45.50 Aligned_cols=94 Identities=22% Similarity=0.297 Sum_probs=61.8
Q ss_pred hhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCC
Q 004888 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (725)
Q Consensus 135 k~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG 214 (725)
.+++|.|+|-||-+|=+.|..|++-.. .+++.+.+-.+..-||+++-|+..+.| ... -|.+|++==.+
T Consensus 17 ~e~drvvViRFG~d~d~~Cm~mDeiL~---~~a~~v~~~a~IY~vDi~~Vpdfn~~y--------el~-dP~tvmFF~rn 84 (133)
T PF02966_consen 17 SEEDRVVVIRFGRDWDPVCMQMDEILY---KIAEKVKNFAVIYLVDIDEVPDFNQMY--------ELY-DPCTVMFFFRN 84 (133)
T ss_dssp H-SSSEEEEEEE-TTSHHHHHHHHHHH---HHHHHHTTTEEEEEEETTTTHCCHHHT--------TS--SSEEEEEEETT
T ss_pred ccCceEEEEEeCCCCCccHHHHHHHHH---HHHHHhhcceEEEEEEcccchhhhccc--------ccC-CCeEEEEEecC
Confidence 578999999999999999999985433 566777655555678999999988776 333 68877766556
Q ss_pred Ccccc--ccccCCCCC-----CCcchHHHHHHHHH
Q 004888 215 KPLMG--GTYFPPEDK-----YGRPGFKTILRKVK 242 (725)
Q Consensus 215 ~~i~~--~tY~p~~~~-----~~~~~F~~~L~~i~ 242 (725)
+.+.- || +.... .+++.|+++++.|-
T Consensus 85 khm~vD~Gt--gnnnKin~~~~~kqe~iDiie~iy 117 (133)
T PF02966_consen 85 KHMMVDFGT--GNNNKINWAFEDKQEFIDIIETIY 117 (133)
T ss_dssp EEEEEESSS--SSSSSBCS--SCHHHHHHHHHHHH
T ss_pred eEEEEEecC--CCccEEEEEcCcHHHHHHHHHHHH
Confidence 65531 11 00000 12457777777664
No 220
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=92.07 E-value=0.51 Score=54.86 Aligned_cols=94 Identities=18% Similarity=0.204 Sum_probs=64.5
Q ss_pred CCChhhhc---ccCCCCccccchHHHHHHHhhcCCcE-EEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCC
Q 004888 108 EHSPYLLQ---HAHNPVDWFAWGEEAFAEARKRDVPI-FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE 183 (725)
Q Consensus 108 e~spyl~~---ha~~~V~W~~~~~eAl~~Ak~e~KpI-~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee 183 (725)
|=+++++. -+..+. .-.++.+++.++-+||+ +.-|.+..|++|...-+ .+ .-.+..|.+...-.+|..+
T Consensus 86 Ef~s~i~~i~~~~~~~~---~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~-~~---~~~a~~~p~i~~~~id~~~ 158 (515)
T TIGR03140 86 EFTSLVLAILQVGGHGP---KLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQ-AL---NQMALLNPNISHTMIDGAL 158 (515)
T ss_pred HHHHHHHHHHHhcCCCC---CCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHH-HH---HHHHHhCCCceEEEEEchh
Confidence 66777662 233332 22488889999999998 66689999999986432 22 2233446666666688888
Q ss_pred CcchHHHHHHHHHHhcCCCCcCcEEEecCCCCcccc
Q 004888 184 RPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 184 ~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~~ 219 (725)
.|++...| ++.++|++++ +|+.++.
T Consensus 159 ~~~~~~~~--------~v~~VP~~~i---~~~~~~~ 183 (515)
T TIGR03140 159 FQDEVEAL--------GIQGVPAVFL---NGEEFHN 183 (515)
T ss_pred CHHHHHhc--------CCcccCEEEE---CCcEEEe
Confidence 99988777 7789999986 4455543
No 221
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=91.89 E-value=1.1 Score=47.59 Aligned_cols=72 Identities=10% Similarity=0.086 Sum_probs=45.3
Q ss_pred CcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCC--cchHHHH--HHHHHHhcCCCCcCcEEEecCC
Q 004888 139 VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREER--PDVDKVY--MTYVQALYGGGGWPLSVFLSPD 213 (725)
Q Consensus 139 KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~--pd~~~~y--~~~~q~~~g~~G~P~~vfl~pd 213 (725)
+-=|+.|+.+.|++|+.|. |-|..+-++ +|-.+-|+.+.. |.+...- ...++. .|+.-+|++++++|+
T Consensus 151 ~~gL~fFy~~~C~~C~~~a------pil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~-l~v~~~Pal~Lv~~~ 223 (256)
T TIGR02739 151 SYGLFFFYRGKSPISQKMA------PVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQH-LGVKYFPALYLVNPK 223 (256)
T ss_pred ceeEEEEECCCCchhHHHH------HHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHh-cCCccCceEEEEECC
Confidence 3568889999999999997 566666655 355555555543 2211000 001122 277789999999999
Q ss_pred CCcc
Q 004888 214 LKPL 217 (725)
Q Consensus 214 G~~i 217 (725)
.+.+
T Consensus 224 t~~~ 227 (256)
T TIGR02739 224 SQKM 227 (256)
T ss_pred CCcE
Confidence 6544
No 222
>PRK10638 glutaredoxin 3; Provisional
Probab=91.69 E-value=0.55 Score=40.62 Aligned_cols=62 Identities=16% Similarity=0.173 Sum_probs=36.0
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCcccc
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~~ 219 (725)
++-++.+||++|++.. ++.+..+-.|..+ |+++.++..+.+ ....|....|..++ +|+.+.+
T Consensus 4 v~ly~~~~Cp~C~~a~-------~~L~~~gi~y~~~--dv~~~~~~~~~l----~~~~g~~~vP~i~~---~g~~igG 65 (83)
T PRK10638 4 VEIYTKATCPFCHRAK-------ALLNSKGVSFQEI--PIDGDAAKREEM----IKRSGRTTVPQIFI---DAQHIGG 65 (83)
T ss_pred EEEEECCCChhHHHHH-------HHHHHcCCCcEEE--ECCCCHHHHHHH----HHHhCCCCcCEEEE---CCEEEeC
Confidence 4567889999999875 2222223346554 444455443333 33457788997744 4666633
No 223
>PRK13191 putative peroxiredoxin; Provisional
Probab=91.53 E-value=1.1 Score=46.34 Aligned_cols=99 Identities=13% Similarity=0.010 Sum_probs=52.3
Q ss_pred cCCcEEE-EEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHH---------------------HHH
Q 004888 137 RDVPIFL-SIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY---------------------MTY 194 (725)
Q Consensus 137 e~KpI~l-~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y---------------------~~~ 194 (725)
.||+++| ++.++||..|...-. .|++ ...++-+++...|-|..+.... .+.+ .+.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~-~l~~-~~~ef~~~g~~VigvS~Ds~~~-h~aw~~~~~~~~~~~i~fPllsD~~~~i 108 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFY-SFAK-KYEEFKKLNTELIGLSVDSNIS-HIEWVMWIEKNLKVEVPFPIIADPMGNV 108 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHH-HHHH-HHHHHHHCCCEEEEEECCCHHH-HHHHHhhHHHhcCCCCceEEEECCchHH
Confidence 4788665 789999999997542 2321 1112222344444444332111 1111 011
Q ss_pred HHHhcCC-------CCcCcEEEecCCCCccccccccCCCCCCCcchHHHHHHHHHH
Q 004888 195 VQALYGG-------GGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 243 (725)
Q Consensus 195 ~q~~~g~-------~G~P~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i~~ 243 (725)
.. .+|+ ...|.++|+||+|++.+...|-.+- |+ ++-++|+.|..
T Consensus 109 a~-~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~---gr-~~~eilr~l~a 159 (215)
T PRK13191 109 AK-RLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEI---GR-NIDEILRAIRA 159 (215)
T ss_pred HH-HcCCcccccCCceeEEEEEECCCCEEEEEEecCCCC---CC-CHHHHHHHHHH
Confidence 11 2242 2369999999999988764332222 22 67777776653
No 224
>PLN02175 endoglucanase
Probab=91.31 E-value=8.4 Score=44.68 Aligned_cols=86 Identities=10% Similarity=0.053 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCC-CCCCCCCcchHHHH
Q 004888 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG-PSKAPGFLDDYAFL 625 (725)
Q Consensus 547 al~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g-~~~~~~~leDyA~l 625 (725)
+-+..|||.|++++++.+ ..| -.++|+.|+++.+|..++- |.+..+.... .+........+=.+
T Consensus 172 ae~AAALAaaS~vfk~~D--~~Y--------A~~lL~~Ak~ly~fA~~~~-----g~y~~~~~~~~~~~Y~s~s~y~DEl 236 (484)
T PLN02175 172 AETAAALAAASMVFRKVD--SKY--------SRLLLATAKKVMQFAIQYR-----GAYSDSLSSSVCPFYCSYSGYKDEL 236 (484)
T ss_pred HHHHHHHHHHHHHhcccC--HHH--------HHHHHHHHHHHHHHHHhCC-----CCcccCccccccCccccCCCccHHH
Confidence 777889999999998622 111 1467999999999988631 2221110000 01000111112456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH
Q 004888 626 ISGLLDLYEFGSGTKWLVWAIE 647 (725)
Q Consensus 626 i~aLL~LYe~Tgd~~yL~~A~~ 647 (725)
++|.+.||.+|||..|++.+..
T Consensus 237 ~WAAawLY~ATgd~~Yl~~~~~ 258 (484)
T PLN02175 237 MWGASWLLRATNDPYYANFIKS 258 (484)
T ss_pred HHHHHHHHHHhCCHHHHHHHHH
Confidence 8889999999999999987654
No 225
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=91.24 E-value=0.6 Score=39.02 Aligned_cols=60 Identities=13% Similarity=0.165 Sum_probs=33.0
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCC-CcCcEEEecCCCCcc
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGG-GWPLSVFLSPDLKPL 217 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~-G~P~~vfl~pdG~~i 217 (725)
+.-|+.+||++|+...+ +.+..+-.|..+ |+++.++..+.+ ....|.. ++|..+ + +|+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~-------~L~~~~i~~~~i--~i~~~~~~~~~~----~~~~~~~~~vP~v~-i--~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKA-------LLDKKGVDYEEI--DVDGDPALREEM----INRSGGRRTVPQIF-I--GDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHH-------HHHHCCCcEEEE--ECCCCHHHHHHH----HHHhCCCCccCEEE-E--CCEEE
Confidence 45678899999999752 222233355554 444444433222 1223544 889664 4 35555
No 226
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=91.15 E-value=0.67 Score=47.21 Aligned_cols=19 Identities=11% Similarity=-0.169 Sum_probs=15.1
Q ss_pred CcE-EEEEeccCChhhHhhh
Q 004888 139 VPI-FLSIGYSTCHWCHVME 157 (725)
Q Consensus 139 KpI-~l~~g~~wC~~C~~Me 157 (725)
|+| ++++.++||+.|...-
T Consensus 26 k~vvlf~~pa~~cp~C~~el 45 (203)
T cd03016 26 SWGILFSHPADFTPVCTTEL 45 (203)
T ss_pred CEEEEEEecCCCCCcCHHHH
Confidence 665 5578999999999754
No 227
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=91.12 E-value=3.3 Score=49.37 Aligned_cols=144 Identities=12% Similarity=0.082 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCC--C-CCCcchH
Q 004888 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSK--A-PGFLDDY 622 (725)
Q Consensus 547 al~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s-~~~g~~~--~-~~~leDy 622 (725)
++++.||..++ +.+.|++..+|+.+.... +|.+++. +.+|... . ...+|.+
T Consensus 301 ~~~a~Al~~~G-----------------------~~~~a~~~l~~l~~~q~~--~G~~~~~~~~dG~~~~~~~~~Q~D~~ 355 (616)
T TIGR01577 301 SYIATALDRAG-----------------------YHDRVDRFFRWAMQTQSR--DGSWQQRYYLNGRLAPLQWGLQIDET 355 (616)
T ss_pred HHHHHHHHHCC-----------------------CHHHHHHHHHHHHHhhCc--CCCcceEEecCCCCCCCCCCccccch
Confidence 77788887764 336788888888876543 5666665 4566543 2 4556669
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccC-CCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHH--
Q 004888 623 AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDRE-GGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVR-- 699 (725)
Q Consensus 623 A~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~-~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~Llr-- 699 (725)
+..+.++...++.|+|.++++.--...+.+.+...+.. .| .... +.. .++...+..++.++....+|.+
T Consensus 356 g~~l~al~~y~~~t~d~~~~~~~~~~v~~a~~fl~~~~~~~-l~~~---~~~----lWEer~G~~~~t~a~~~aAL~~aa 427 (616)
T TIGR01577 356 GSILWAMDQHYRLTNDRAFLEEIWESVQKAAQYLILFIDPE-TPLP---CRD----LWEEREGVFTYTASAVYGGLDAAA 427 (616)
T ss_pred hHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhccCC-CCCC---CCc----cceecCCccCccHHHHHHHHHHHH
Confidence 99999999999999999876554444444433332210 01 1111 111 1222335567777765555544
Q ss_pred -HHHhhCCCC-chHHHHHHHHHHHHh
Q 004888 700 -LASIVAGSK-SDYYRQNAEHSLYLR 723 (725)
Q Consensus 700 -L~~~t~~~~-~~~y~~~A~~~l~~~ 723 (725)
|+...|+.+ ...|++.|+++-+.+
T Consensus 428 ~lA~~lGd~~~a~~~~~~Ad~ik~~i 453 (616)
T TIGR01577 428 AVADKLGEKRLAQNWKKAAEFIKRAV 453 (616)
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHHH
Confidence 455555531 256888888876654
No 228
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=90.70 E-value=0.39 Score=41.01 Aligned_cols=57 Identities=18% Similarity=0.288 Sum_probs=32.8
Q ss_pred eccCChhhHhhhhhccCCHHHHHHHhcCcEEEEE-cCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCccccc
Q 004888 146 GYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKV-DREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGG 220 (725)
Q Consensus 146 g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~Vkv-D~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~~~ 220 (725)
.+++|+.|..+.+ -+.+.+++.=+.+.+ |.++.+++ ..| |+.+.|+.++ ||+..+.|
T Consensus 6 ~~~~C~~C~~~~~------~~~~~~~~~~i~~ei~~~~~~~~~-~~y--------gv~~vPalvI---ng~~~~~G 63 (76)
T PF13192_consen 6 FSPGCPYCPELVQ------LLKEAAEELGIEVEIIDIEDFEEI-EKY--------GVMSVPALVI---NGKVVFVG 63 (76)
T ss_dssp ECSSCTTHHHHHH------HHHHHHHHTTEEEEEEETTTHHHH-HHT--------T-SSSSEEEE---TTEEEEES
T ss_pred eCCCCCCcHHHHH------HHHHHHHhcCCeEEEEEccCHHHH-HHc--------CCCCCCEEEE---CCEEEEEe
Confidence 4666999998874 334444332133332 33333333 333 8899999965 57776654
No 229
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=90.68 E-value=1.8 Score=45.85 Aligned_cols=79 Identities=11% Similarity=0.058 Sum_probs=46.5
Q ss_pred HHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCC--CcchHHHH--HHHHHHhcCCCCc
Q 004888 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREE--RPDVDKVY--MTYVQALYGGGGW 204 (725)
Q Consensus 130 Al~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee--~pd~~~~y--~~~~q~~~g~~G~ 204 (725)
+++...++ -=|+.|+.+.|++||.|. |-|..+-++ +|-.+-|..+. .|.+-..- ....+ ..|+.-+
T Consensus 137 ~i~~la~~--~GL~fFy~s~Cp~C~~~a------Pil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~-~l~v~~~ 207 (248)
T PRK13703 137 AIAKLAEH--YGLMFFYRGQDPIDGQLA------QVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQ-RLGVKYF 207 (248)
T ss_pred HHHHHHhc--ceEEEEECCCCchhHHHH------HHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHH-hcCCccc
Confidence 34444433 558888999999999998 566666665 34444444432 22210000 00011 2377789
Q ss_pred CcEEEecCCCCcc
Q 004888 205 PLSVFLSPDLKPL 217 (725)
Q Consensus 205 P~~vfl~pdG~~i 217 (725)
|++++++|+.+.+
T Consensus 208 PAl~Lv~~~t~~~ 220 (248)
T PRK13703 208 PALMLVDPKSGSV 220 (248)
T ss_pred ceEEEEECCCCcE
Confidence 9999999986544
No 230
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=90.66 E-value=0.63 Score=39.54 Aligned_cols=59 Identities=12% Similarity=0.121 Sum_probs=34.4
Q ss_pred EEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCcc
Q 004888 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (725)
Q Consensus 143 l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i 217 (725)
.-++.+||++|+...+ .+ +..+-.|..+ |++..|...+.+ +..+|..++|+.+ + +|+.+
T Consensus 2 ~ly~~~~Cp~C~~a~~-~L------~~~~i~~~~~--di~~~~~~~~~~----~~~~g~~~vP~i~-i--~g~~i 60 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKA-LL------SSKGVTFTEI--RVDGDPALRDEM----MQRSGRRTVPQIF-I--GDVHV 60 (79)
T ss_pred EEEecCCChhHHHHHH-HH------HHcCCCcEEE--EecCCHHHHHHH----HHHhCCCCcCEEE-E--CCEEE
Confidence 3567899999999762 22 2233345554 444455443333 3345788899975 4 35544
No 231
>PRK10329 glutaredoxin-like protein; Provisional
Probab=90.53 E-value=0.65 Score=40.43 Aligned_cols=54 Identities=15% Similarity=0.229 Sum_probs=32.6
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEE
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vf 209 (725)
+.-++.+||++|+.+.+ .+ +.. +.-...+|+++.|+....+ +. .|....|+.++
T Consensus 3 v~lYt~~~Cp~C~~ak~-~L------~~~--gI~~~~idi~~~~~~~~~~----~~-~g~~~vPvv~i 56 (81)
T PRK10329 3 ITIYTRNDCVQCHATKR-AM------ESR--GFDFEMINVDRVPEAAETL----RA-QGFRQLPVVIA 56 (81)
T ss_pred EEEEeCCCCHhHHHHHH-HH------HHC--CCceEEEECCCCHHHHHHH----HH-cCCCCcCEEEE
Confidence 44578899999998753 22 112 2333345666666544332 22 37788999976
No 232
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=90.34 E-value=8.3 Score=43.80 Aligned_cols=155 Identities=18% Similarity=0.271 Sum_probs=86.1
Q ss_pred ccCCCC---CCCCCCCCh--hHHHHH-HHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCeEEEEecC----
Q 004888 298 SRFGGF---GSAPKFPRP--VEIQMM-LYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVD---- 367 (725)
Q Consensus 298 ~~~GGf---g~apKFP~~--~~l~~l-l~~~~~~~~~~~~~~~~~~~~~~~~TL~~ma~gGi~D~v~GGF~RYs~D---- 367 (725)
...||| |.--||-.| .....| +..+...+.......-+.+++-+..-|+=|.+ +++. .|+|+.-.-|
T Consensus 51 DlsGGW~DAGD~~Ky~~~~a~s~~~L~~~~~e~~~~~e~~~~~~dllde~kwg~D~llk--m~~~-~~~~~~qvgdg~~~ 127 (444)
T PF00759_consen 51 DLSGGWYDAGDYGKYTFPMAYSVTMLAWSAYEFFPAYESGNGIPDLLDEAKWGLDWLLK--MQDS-DGTFYAQVGDGGVD 127 (444)
T ss_dssp B---SB-SSSSS-EEHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH--TBSC-TTEEEEEESTHHHH
T ss_pred cccCceeecCCcceecccHHHHHHHHHHHHHHhHHHhhcCCcHHHHHHHHHHHHHHHHh--ccCC-CCceeeeccCccch
Confidence 346898 555687554 222233 33332211110112357889999999998877 6665 4555542212
Q ss_pred -CCCCCC----C--------Cch-hHHHHHHHHHHHHHHHHccCC------hHHHHHHHHHHHHHHHhcc-------CCC
Q 004888 368 -ERWHVP----H--------FEK-MLYDQGQLANVYLDAFSLTKD------VFYSYICRDILDYLRRDMI-------GPG 420 (725)
Q Consensus 368 -~~W~vP----H--------FEK-MLyDNA~Ll~~ya~Ay~~t~d------~~y~~vA~~~~~fl~~~m~-------~~~ 420 (725)
..|..| + .++ .--..+..+.+++.|++++++ ..+++.|+++.+|...+-- ...
T Consensus 128 h~~w~~~~~~~~~~~~~~~~~~~~~t~~~~~~AAalA~As~v~k~~d~~~A~~~L~~A~~~~~~a~~~~~~~~~~~~~~~ 207 (444)
T PF00759_consen 128 HKVWGRPEIMPDDDPSYRYDAPNPGTDATAEFAAALAAASRVFKDFDPAYAAQCLKAAKEAYAFAKKNPGVYSDNPQPNG 207 (444)
T ss_dssp HTEESTGGGTGSGESEEEEETTB-EHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHSTTHGGGTSTCTT
T ss_pred hhcccCCCCCCCCCCcceEecCCCchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhCCCcccCCccccc
Confidence 124332 1 133 222367888999999999886 4678899999999987431 112
Q ss_pred Cceeeecc-CCCccccccccccCcceEEechHHHHHHhhhh--HHHHHHHhc
Q 004888 421 GEIFSAED-ADSAETEGATRKKEGAFYVWTSKEVEDILGEH--AILFKEHYY 469 (725)
Q Consensus 421 Ggfysa~D-ADs~~~~~~~~~~EGayY~wt~~Ei~~~lg~~--~~l~~~~y~ 469 (725)
+++|.+.+ .| | .+|...|+..++|+. .+.+.+.+.
T Consensus 208 ~~~Y~~~~~~D-----------e---~~wAA~~Ly~aTg~~~Y~~~a~~~~~ 245 (444)
T PF00759_consen 208 GGFYNSSGYED-----------E---LAWAAAELYRATGDESYLDYAKEYYD 245 (444)
T ss_dssp TTTSHCS-SHH-----------H---HHHHHHHHHHHHT-HHHHHHHHHHCC
T ss_pred CCcccCCCccc-----------H---HHHHHHHHHHhcCcHHHHHHHHHhHH
Confidence 45555311 11 0 268899999999864 344454443
No 233
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.16 E-value=0.76 Score=43.16 Aligned_cols=52 Identities=25% Similarity=0.271 Sum_probs=35.7
Q ss_pred HHHHHHHh---hcCCcEEEEEec--------cCChhhHhhhhhccCCHHHHHHHh---cCcEEEEEcCCCCc
Q 004888 128 EEAFAEAR---KRDVPIFLSIGY--------STCHWCHVMEVESFEDEGVAKLLN---DWFVSIKVDREERP 185 (725)
Q Consensus 128 ~eAl~~Ak---~e~KpI~l~~g~--------~wC~~C~~Me~e~f~d~eVa~~ln---~~FV~VkvD~ee~p 185 (725)
.+.|++.. ..||-||+.|.+ +||+.|.+-| |-|.+.++ ++-..|.|++.++|
T Consensus 12 ~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AE------Pvi~~alk~ap~~~~~v~v~VG~rp 77 (128)
T KOG3425|consen 12 YESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAE------PVINEALKHAPEDVHFVHVYVGNRP 77 (128)
T ss_pred HHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhh------HHHHHHHHhCCCceEEEEEEecCCC
Confidence 34444443 245559999865 6999999977 56666666 46677777777665
No 234
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.60 E-value=0.13 Score=53.03 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=51.4
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEe
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl 210 (725)
.+|++++.|++.||..|+.|+ ++|. .+++.. ++...+|++.++.|++...+ .+.+.|+.++.
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~-~v~~--~~~~~~-~~~~~~k~~a~~~~eis~~~--------~v~~vp~~~~~ 77 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMD-QVFD--HLAEYF-KNAQFLKLEAEEFPEISNLI--------AVEAVPYFVFF 77 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHH-HHHH--HHHHhh-hhheeeeehhhhhhHHHHHH--------HHhcCceeeee
Confidence 789999999999999999997 4664 455566 68999999999999988766 34578999987
No 235
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=89.45 E-value=20 Score=40.48 Aligned_cols=303 Identities=16% Similarity=0.186 Sum_probs=166.3
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCC-----ccccccccccCcc
Q 004888 370 WHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADS-----AETEGATRKKEGA 444 (725)
Q Consensus 370 W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~Ggfysa~DADs-----~~~~~~~~~~EGa 444 (725)
=.|--||-.+- ++--++-||-++|+..|++.|.+--+=|+.-+..|.+-=|+.++-+. .+-.++.-.-|=.
T Consensus 169 ~~VNlFEtTIR----vLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~sps~IPysdVnL~~~~A~~p~~~~~SStaEvt 244 (546)
T KOG2431|consen 169 RDVNLFETTIR----VLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFSSPSPIPYSDVNLGTGTAHPPRWTGDSSTAEVT 244 (546)
T ss_pred cceehhhhhHH----HHhhhhhhhccccchhHHHHHHHHHHHHHHhhcCCCCCCcceeecCCCcccCCCCCCccchhhhe
Confidence 34677887765 77777789999999999999999999999988888776677554221 1111111111211
Q ss_pred eEEechHHHHHHhhhh--HH----HHHHHhccc---CCCCcCCCCCCCC-CCCCCCcceeeccCCchHHHH-------hc
Q 004888 445 FYVWTSKEVEDILGEH--AI----LFKEHYYLK---PTGNCDLSRMSDP-HNEFKGKNVLIELNDSSASAS-------KL 507 (725)
Q Consensus 445 yY~wt~~Ei~~~lg~~--~~----l~~~~y~l~---~~Gn~e~~~~~dp-~~~f~g~nvL~~~~~~~~~a~-------~~ 507 (725)
----...++..++|+. -+ +...++++. .+|-|. -..+| .|.|.+.+|-......+ +-+ +.
T Consensus 245 tiQlEfr~Ls~ltgd~kY~~~a~kv~ehih~~~~~~~dGLvP--i~in~~tG~F~~~tI~lGaRgDS-yYEYLlKQwlQt 321 (546)
T KOG2431|consen 245 TIQLEFRYLSRLTGDPKYEELAEKVTEHIHGLGKKKHDGLVP--IFINPNTGLFVGSTITLGARGDS-YYEYLLKQWLQT 321 (546)
T ss_pred eeeeeHHHHHhhcCCchHHHHHHHHHHHHhccCccccCCeee--EEEcCCCCccccceEEeccccch-HHHHHHHHHHHc
Confidence 1122344555566642 12 333444552 234332 13345 37788866533333322 222 12
Q ss_pred CCCH----HHHHHHHHHHHHHHHhhhc-------------cCCCCCCCcchhhhcHHHHHHHHHHHHHHhhhhhhhhccc
Q 004888 508 GMPL----EKYLNILGECRRKLFDVRS-------------KRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFN 570 (725)
Q Consensus 508 g~~~----e~~~~~l~~~r~kL~~~R~-------------~R~~P~lDdKiitsWNal~I~aLa~A~~vl~d~~~~~~~~ 570 (725)
|.+. +...+.++..++.|+.... .+..|-.|-- ++- +.+.+..+..-|=
T Consensus 322 g~~~~~l~~dy~~am~gv~~~Llr~S~P~~~~fiGEl~~G~~fsPKMDHL-VCF-----lpGtL~lG~~~Gl-------- 387 (546)
T KOG2431|consen 322 GKSLTYLRDDYIEAMEGVRKHLLRQSKPNKLWFIGELPHGLQFSPKMDHL-VCF-----LPGTLALGSTNGL-------- 387 (546)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhcCCCcceEEEEecccccccCcccceE-EEe-----ecchhhhccccCC--------
Confidence 3332 4444666777788875443 2445555542 221 2222222211110
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhccccCCCe---EEEEe-cCC--CCCCC-CCcchH----HHHHHHHHHHHHHcCCH
Q 004888 571 FPVVGSDRKEYMEVAESAASFIRRHLYDEQTHR---LQHSF-RNG--PSKAP-GFLDDY----AFLISGLLDLYEFGSGT 639 (725)
Q Consensus 571 ~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~---l~~s~-~~g--~~~~~-~~leDy----A~li~aLL~LYe~Tgd~ 639 (725)
|. .++-++.|+++.+-..+......+|. +.|-. .+. ..++- +-+|-+ -..++++.-||++|||.
T Consensus 388 -~~----~~~hl~lA~~l~~TCyqMY~~~~TGLaPEIv~Fn~~~~~~~~DiyvKp~D~HnLlRPEtVESlfylYriT~D~ 462 (546)
T KOG2431|consen 388 -PA----SEEHLELAQELMETCYQMYRQNPTGLAPEIVHFNLYPQPGKNDIYVKPLDRHNLLRPETVESLFYLYRITGDR 462 (546)
T ss_pred -Cc----chHHHHHHHHHHHHHHHHHccCcCCCCceEEEEeccCCCccCceeeccchhhcccChHHHhhhheeeEecCCc
Confidence 11 14688999999998876653433553 22221 111 11111 112222 47899999999999999
Q ss_pred HHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCChHH-HHHHHHHHHHHhhCCC
Q 004888 640 KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNS-VSVINLVRLASIVAGS 707 (725)
Q Consensus 640 ~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Ns-v~a~~LlrL~~~t~~~ 707 (725)
+|.+|--++++.+.+.- .-.+|||-...+- .....+ ..| ..-| -+++-|--|+-+.+++
T Consensus 463 kYqewGW~if~sfekyt-rv~~ggytSi~nV-~~~~~~---~RD----kMESF~laETLKYLYLLf~DD 522 (546)
T KOG2431|consen 463 KYQEWGWEIFQSFEKYT-RVPSGGYTSIDNV-KDQKPK---RRD----KMESFWLAETLKYLYLLFSDD 522 (546)
T ss_pred hHHHHhHHHHHHHHHhc-ccCCCCccchhhh-hhcCCc---hhh----hHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999886653 3345777654321 111111 122 1222 4777788888888764
No 236
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=88.95 E-value=61 Score=39.08 Aligned_cols=107 Identities=12% Similarity=0.107 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHhhccccCCCCCCCCCCCChhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCe
Q 004888 281 PQNALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGG 360 (725)
Q Consensus 281 ~~~~~~~~~~~l~~~~D~~~GGfg~apKFP~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~ma~gGi~D~v~GG 360 (725)
...++++|.+.|.. ..+.+|++.. +|....+..|.-+.. ..+ .+ ++.+.|+.+.+= +..+-+||
T Consensus 233 r~~A~~~~~~~i~~--~~~~~~~~~i--~p~~~~~~~l~~~g~-~~~------~p----~~~k~l~~l~~~-~~~~~~~g 296 (634)
T TIGR03463 233 RARALDFCLEQIRA--EDEATHYICI--SPVNGVLNMLAWFAV-NPD------GP----EVAAHLEGLEDY-RYEDDDRG 296 (634)
T ss_pred HHHHHHHHHHHHHH--HhcCCCeEeh--HHHHHHHHHHHHhCC-CCC------CH----HHHHHHHHHHhh-EEEcCCCC
Confidence 45567777776665 4456777765 564333332322221 111 22 344445554331 22333435
Q ss_pred EE-EEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHh
Q 004888 361 FH-RYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRD 415 (725)
Q Consensus 361 F~-RYs~D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~ 415 (725)
.+ .-++... +|-|+.+.++.++... ++++....+++++||.+.
T Consensus 297 ~~~q~~~s~~----------WDTala~~AL~e~g~~--~~~~~~~l~kA~~wL~~~ 340 (634)
T TIGR03463 297 LRYNGYNSSE----------WDTAFAVQALAATPET--AGRHRRMLERAARFLEAN 340 (634)
T ss_pred EEEeeCCCCc----------hhHHHHHHHHHHcCCC--chhhhHHHHHHHHHHHHh
Confidence 43 2233332 5888888888875322 457888999999999974
No 237
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=88.93 E-value=0.34 Score=52.07 Aligned_cols=65 Identities=17% Similarity=0.305 Sum_probs=47.7
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHH--HH-HHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEe
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEG--VA-KLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~e--Va-~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl 210 (725)
.+..|||.|+|+||...+++. -+|+... +. ++=+..-|.-+||.+...++...| .+.-+||.=++
T Consensus 12 s~elvfv~FyAdWCrFSq~L~-piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky--------~I~KyPTlKvf 79 (375)
T KOG0912|consen 12 SNELVFVNFYADWCRFSQMLK-PIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKY--------HINKYPTLKVF 79 (375)
T ss_pred cceEEeeeeehhhchHHHHHh-HHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhh--------ccccCceeeee
Confidence 477899999999999998875 4665321 11 112235788899999888888887 56789987654
No 238
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=88.86 E-value=26 Score=42.16 Aligned_cols=117 Identities=15% Similarity=0.213 Sum_probs=63.4
Q ss_pred cccCCCCCCC--CC-CCChhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCC---
Q 004888 297 DSRFGGFGSA--PK-FPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERW--- 370 (725)
Q Consensus 297 D~~~GGfg~a--pK-FP~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~ma~gGi~D~v~GGF~RYs~D~~W--- 370 (725)
+...||||-. +. +|-...-...|....... .........+.+-+..-|-.|.. .+|||--|..+...
T Consensus 362 ~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~~-~~~~~~~~~~i~ra~~wLl~~Qn------~dGgw~af~~~~~~~~l 434 (635)
T TIGR01507 362 NLEPGGWAFQFDNVYYPDVDDTAVVVWALNGLR-LPDERRRRDAMTKAFRWIAGMQS------SNGGWGAFDVDNTSDLL 434 (635)
T ss_pred CCCCCccCCCCCCCCCCCchhHHHHHHHHHHcC-CCccccchHHHHHHHHHHHHhcC------CCCCEecccCCcchhHH
Confidence 4568999876 66 455432222222221111 00001112444555555666655 57999776544432
Q ss_pred -CCCCC--chhH-----HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceee
Q 004888 371 -HVPHF--EKML-----YDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 425 (725)
Q Consensus 371 -~vPHF--EKML-----yDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~Ggfys 425 (725)
++|.- ..|+ -+-++.+.+|.... ...-...++++++||++ ++.++||+|.
T Consensus 435 ~~~~f~d~~~~~D~~~~d~Ta~~l~al~~~g----~~~~~~~i~rav~~L~~-~Q~~dG~W~g 492 (635)
T TIGR01507 435 NHIPFCDFGAVTDPPTADVTARVLECLGSFG----YDDAWPVIERAVEYLKR-EQEPDGSWFG 492 (635)
T ss_pred hcCCccccccccCCCCccHHHHHHHHHHHhC----CCchhHHHHHHHHHHHH-ccCCCCCCcc
Confidence 23421 1221 12678888887642 11126788999999986 7788999864
No 239
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=88.49 E-value=40 Score=36.38 Aligned_cols=76 Identities=13% Similarity=0.152 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Q 004888 335 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRR 414 (725)
Q Consensus 335 ~~~~~~~~~TL~~ma~gGi~D~v~GGF~RYs~D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~ 414 (725)
+++.+++....+++.. +-+-+|||-- |. +-+=-....|..+.++.+|-+.. +.-..+.+++++||.+
T Consensus 48 ~~~~~~i~~g~~r~l~---~q~~dGsf~~------w~--~~~~s~wlTA~v~~~l~~a~~~~--~v~~~~l~~a~~wL~~ 114 (297)
T cd02896 48 DEALKYIRQGYQRQLS---YRKPDGSYAA------WK--NRPSSTWLTAFVVKVFSLARKYI--PVDQNVICGSVNWLIS 114 (297)
T ss_pred HHHHHHHHHHHHHHHh---ccCCCCCccC------CC--CCCcchhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHh
Confidence 4678888888888775 5567899942 31 11334557899999999997654 2345788999999998
Q ss_pred hccCCCCcee
Q 004888 415 DMIGPGGEIF 424 (725)
Q Consensus 415 ~m~~~~Ggfy 424 (725)
. +.++|+|-
T Consensus 115 ~-Q~~dG~f~ 123 (297)
T cd02896 115 N-QKPDGSFQ 123 (297)
T ss_pred c-CCCCCeeC
Confidence 5 78889884
No 240
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=88.47 E-value=1.3 Score=38.54 Aligned_cols=57 Identities=16% Similarity=0.177 Sum_probs=32.5
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEE
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vf 209 (725)
++.++.++|+||+...+ .....+=.|..|.++..+..+. ..+++...|+...|.+++
T Consensus 3 v~iyt~~~CPyC~~ak~-------~L~~~g~~~~~i~~~~~~~~~~----~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKR-------LLDRKGVDYEEIDVDDDEPEEA----REMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHH-------HHHHcCCCcEEEEecCCcHHHH----HHHHHHhCCCCCcCEEEE
Confidence 34577899999999763 2222222455555554432122 223344457888998774
No 241
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=88.32 E-value=3.5 Score=47.72 Aligned_cols=97 Identities=10% Similarity=0.032 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCC--CCCCChHHHHHHHHHH
Q 004888 622 YAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHD--GAEPSGNSVSVINLVR 699 (725)
Q Consensus 622 yA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D--~a~PS~Nsv~a~~Llr 699 (725)
..-++-||+.+|-.|||+-|++.|.++.+.+...|--|.+--|=.+...... .+.....- .++-+.++..=...+.
T Consensus 264 NirF~GGllsay~lsge~~f~~kA~~igdkLLpAfntptGIp~~~vn~ksG~--~~n~~wasgg~SILaE~gtlhlef~~ 341 (625)
T KOG2204|consen 264 NIRFVGGLLSAYALSGEEMFLEKAPEIGDKLLPAFNTPTGIPKALVNNKSGD--ADNYGWASGGSSILAEFGTLHLEFSY 341 (625)
T ss_pred eeeeehhhHHHhhhcccHHHHHhhHHHHHHhhhcccCCCCCchhhhccccCc--cCCcccccCcchHhhhcCceeeehHH
Confidence 3445779999999999999999999999999888744332111111100000 00000000 0122222223335678
Q ss_pred HHHhhCCCCchHHHHHHHHHHHHh
Q 004888 700 LASIVAGSKSDYYRQNAEHSLYLR 723 (725)
Q Consensus 700 L~~~t~~~~~~~y~~~A~~~l~~~ 723 (725)
|+.++|+ +.|.++...|-+.+
T Consensus 342 LS~ltg~---P~~~ekv~~IRk~l 362 (625)
T KOG2204|consen 342 LSKLTGN---PTFAEKVVKIRKVL 362 (625)
T ss_pred hhhccCC---chHHHHHHHHHHHH
Confidence 9999997 78999888876654
No 242
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=88.24 E-value=0.4 Score=48.41 Aligned_cols=32 Identities=16% Similarity=0.295 Sum_probs=25.9
Q ss_pred HHHHHhhcCCcEEEEEeccCChhhHhhhhhcc
Q 004888 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESF 161 (725)
Q Consensus 130 Al~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f 161 (725)
++...+..+|+.++.|+-..|++|++++++..
T Consensus 69 ~i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~ 100 (197)
T cd03020 69 AIVYGKGNGKRVVYVFTDPDCPYCRKLEKELK 100 (197)
T ss_pred CeEEcCCCCCEEEEEEECCCCccHHHHHHHHh
Confidence 44445567899999999999999999997654
No 243
>PRK13189 peroxiredoxin; Provisional
Probab=87.79 E-value=1.3 Score=45.97 Aligned_cols=36 Identities=22% Similarity=0.091 Sum_probs=22.1
Q ss_pred CcCcEEEecCCCCccccccccCCCCCCCcchHHHHHHHHH
Q 004888 203 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (725)
Q Consensus 203 G~P~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i~ 242 (725)
..|.++|+||+|++.+...|-.+. | ..+-++|+.|.
T Consensus 125 ~~r~tfIID~~G~Ir~~~~~~~~~---g-r~~~eilr~l~ 160 (222)
T PRK13189 125 TVRAVFIIDPKGIIRAILYYPQEV---G-RNMDEILRLVK 160 (222)
T ss_pred ceeEEEEECCCCeEEEEEecCCCC---C-CCHHHHHHHHH
Confidence 469999999999987553221111 1 14556665554
No 244
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=87.76 E-value=24 Score=41.24 Aligned_cols=271 Identities=17% Similarity=0.128 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCccccccccccCcceEEechHHHHHHhhhhH
Q 004888 382 QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHA 461 (725)
Q Consensus 382 NA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~lg~~~ 461 (725)
|=+.+..|+-||-.+|++.|+..|.++.+=|+--+--|.|-=++.++..+- -+.=|.|...=.. +|
T Consensus 264 NirF~GGllsay~lsge~~f~~kA~~igdkLLpAfntptGIp~~~vn~ksG---------~~~n~~wasgg~S-IL---- 329 (625)
T KOG2204|consen 264 NIRFVGGLLSAYALSGEEMFLEKAPEIGDKLLPAFNTPTGIPKALVNNKSG---------DADNYGWASGGSS-IL---- 329 (625)
T ss_pred eeeeehhhHHHhhhcccHHHHHhhHHHHHHhhhcccCCCCCchhhhccccC---------ccCCcccccCcch-Hh----
Confidence 666778888899999999999999999999998887788866666665441 1233445421000 11
Q ss_pred HHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCH-HHHHHHHHHHHHHHHhhhccCCCCCCCcc
Q 004888 462 ILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPL-EKYLNILGECRRKLFDVRSKRPRPHLDDK 540 (725)
Q Consensus 462 ~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~-e~~~~~l~~~r~kL~~~R~~R~~P~lDdK 540 (725)
.+.|. ||+.- .-++...|.+. .+....|....+++.. |....-.+
T Consensus 330 ---------aE~gt------------------lhlef--~~LS~ltg~P~~~ekv~~IRk~l~k~ek-----P~GLypnY 375 (625)
T KOG2204|consen 330 ---------AEFGT------------------LHLEF--SYLSKLTGNPTFAEKVVKIRKVLNKSEK-----PHGLYPNY 375 (625)
T ss_pred ---------hhcCc------------------eeeeh--HHhhhccCCchHHHHHHHHHHHHHhhcC-----CCCCCccc
Confidence 11121 12111 12344445443 3333333333333321 22211111
Q ss_pred hhh---hcHHHHHH----------HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCC--CeEE
Q 004888 541 VIV---SWNGLVIS----------SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQT--HRLQ 605 (725)
Q Consensus 541 iit---sWNal~I~----------aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~--G~l~ 605 (725)
|.- -|.-.+.+ =|.++....+.. +.++...=.++...|.+++..... |..|
T Consensus 376 inP~sg~wgq~~tslg~lgDSfyeyllK~wl~s~kT--------------d~eak~my~~am~Ai~~~li~~S~~s~lty 441 (625)
T KOG2204|consen 376 INPSSGEWGQHHTSLGALGDSFYEYLLKAWLQSDKT--------------DCEAKGMYEDAMIAIEKYLIFKSDGSGLTY 441 (625)
T ss_pred ccCCCCchhhHHhHHhhhhhhHHHHHHHHHhhcCCc--------------chHHHHhHHHHHHHHHhhheeccCCCCeEE
Confidence 110 23332222 244555555431 245666666667777776655433 3444
Q ss_pred EE-ecCCCCCCCCCcchHHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHHHHHccccCC----CcccccCCCCCccc
Q 004888 606 HS-FRNGPSKAPGFLDDYAFLISGLLDLYEFGSGT-----KWLVWAIELQNTQDELFLDREG----GGYFNTTGEDPSVL 675 (725)
Q Consensus 606 ~s-~~~g~~~~~~~leDyA~li~aLL~LYe~Tgd~-----~yL~~A~~L~~~~~~~F~D~~~----Ggyf~t~~~~~~~~ 675 (725)
-+ +.+|.. .--..-.|...-|++.|....++. .|++.+.++..++-+-|.-..+ +.|+.+.. ++...
T Consensus 442 i~e~~~g~l--ehKm~hlacf~gGm~algA~~~~~~~~~~~y~el~~eia~TchesY~rt~T~lgpesf~fn~~-~ea~~ 518 (625)
T KOG2204|consen 442 ISEWNGGGL--EHKMGHLACFAGGMFALGAIKGDTVGSSKHYLELGGEIATTCHESYTRTTTKLGPESFWFNHG-VEAFA 518 (625)
T ss_pred EEecCCCch--hhhhchhhcccccceeeccccCCCcchhHHHHHHhHHHHHHHHHHHhccccccChhhhcccCc-cchhh
Confidence 44 443321 111233577888889888888874 5999999999999887643222 23443332 22332
Q ss_pred cccccCCCCCCCChHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhh
Q 004888 676 LRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLYLRQ 724 (725)
Q Consensus 676 ~r~k~~~D~a~PS~Nsv~a~~LlrL~~~t~~~~~~~y~~~A~~~l~~~~ 724 (725)
+|..+-+ -+-- .-..+.++-|.++|++ +.||+-+.+.++++.
T Consensus 519 ~r~~Esy--yILr--pEviEs~fYlwRlT~d---~kyR~wgweavqale 560 (625)
T KOG2204|consen 519 VRKVESY--YILR--PEVIESYFYLWRLTGD---QKYRSWGWEAVQALE 560 (625)
T ss_pred hhcccce--eecC--HHHHHHHHHHhhhcCC---hhHHHHHHHHHHHHH
Confidence 3332210 1111 2356788889999997 789999999888764
No 245
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=87.58 E-value=12 Score=45.88 Aligned_cols=132 Identities=20% Similarity=0.292 Sum_probs=92.0
Q ss_pred chhhhcHHHH--HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCC
Q 004888 540 KVIVSWNGLV--ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPG 617 (725)
Q Consensus 540 KiitsWNal~--I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~ 617 (725)
+-|-+.+|+. +.||..-+.+++| ....+-|.+.+..+...-.. ...+.
T Consensus 690 ~~iga~~G~~g~~yal~~I~~~~~~----------------~~l~~~~~~~i~~le~~v~~--------------~~~~d 739 (963)
T COG4403 690 INIGAFTGLSGYFYALWKIYSVTRD----------------NYLIQSAENSIRHLEILVQK--------------SKDPD 739 (963)
T ss_pred cccccccccchhhhhhHHHHHhccc----------------HHHHHHHHHHHHHHHHHHhh--------------ccCcc
Confidence 3344455554 6688888888887 45666666666644322211 12245
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCChHHHHHHHH
Q 004888 618 FLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINL 697 (725)
Q Consensus 618 ~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~L 697 (725)
+..+-|=++..|+.+|+.|.++++++.|..+.+.+.+...-.++ .++++. .+ --|+|-.+..|
T Consensus 740 ~i~Gl~g~i~~L~~iYk~~~epk~l~~ais~~~~l~~~~v~~d~---------s~~~l~-----gf---shg~sgi~~tL 802 (963)
T COG4403 740 FINGLAGVICVLVSIYKLTDEPKFLELAISLGRILMEKIVGNDS---------SETVLL-----GF---SHGASGIILTL 802 (963)
T ss_pred hhhccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhhcccc---------ccceec-----cc---ccchHHHHHHH
Confidence 56667888999999999999999999999999998877653222 112221 12 25667788899
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHH
Q 004888 698 VRLASIVAGSKSDYYRQNAEHSLY 721 (725)
Q Consensus 698 lrL~~~t~~~~~~~y~~~A~~~l~ 721 (725)
+.|+..||+ +.+.+.+++++.
T Consensus 803 ~~ly~~T~e---~~l~~~i~e~~~ 823 (963)
T COG4403 803 LKLYEATGE---ESLLKKIKELLS 823 (963)
T ss_pred HHHHHhcCc---HHHHHHHHHHHH
Confidence 999999997 789999998875
No 246
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=86.30 E-value=14 Score=42.75 Aligned_cols=117 Identities=18% Similarity=0.149 Sum_probs=77.4
Q ss_pred CCcchhhhcHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCC----
Q 004888 537 LDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP---- 612 (725)
Q Consensus 537 lDdKiitsWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~---- 612 (725)
-....+.+|....|..+.+.++.+||... ..++....++..+++..+..+...+...+.+.|-.
T Consensus 197 ~~~~~~~~w~l~~i~~~~~~y~~tGD~~~------------l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DW~~~~~ 264 (509)
T PF05592_consen 197 GGGFGIPDWSLAWIIIPWDYYLYTGDREF------------LEEYYPAMKRYLDYLERRVDDGLDGLPGWGFGDWLAPGN 264 (509)
T ss_dssp SSGGGBHHHHHHHHHHHHHHHHHHT-HHH------------HHHHHHHHHHHHHHHHTTB-TSSB-CCSB--S-SS----
T ss_pred CCCCCCccHHHHHHHHHHHHHHHhCCHHH------------HHHHHHHHHHHHHHHHHhCCccccCCCCCceeecCCccC
Confidence 36677889999999999999999999431 26788888888888887664300011111122211
Q ss_pred ---CCCCCCcch---HHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHccccCCCccc
Q 004888 613 ---SKAPGFLDD---YAFLISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYF 665 (725)
Q Consensus 613 ---~~~~~~leD---yA~li~aLL~LYe~Tgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf 665 (725)
.......-. |..++..+.++.++.|++ .|.++|.+|-+.+.++|||++.|.+-
T Consensus 265 ~~~~~~~~~~~~~~~~~~~l~~~a~lA~~lg~~~~a~~y~~~a~~lk~a~~~~~~d~~~g~~~ 327 (509)
T PF05592_consen 265 DGDGPTPGATITNALYYYALRAAAELAEALGKDEDAAEYRARAERLKAAINRHFWDPEKGGYA 327 (509)
T ss_dssp TT---SCCEEHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHCEETTTTEEC
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccCcccCccc
Confidence 111121212 455666688888999985 79999999999999999998877553
No 247
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=86.06 E-value=1.1 Score=50.95 Aligned_cols=61 Identities=8% Similarity=0.116 Sum_probs=35.7
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhc---CcEEEEEcCCCCcchHHHHHHH----HHHhcCCCCcCcEEEecCCC
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTY----VQALYGGGGWPLSVFLSPDL 214 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~---~FV~VkvD~ee~pd~~~~y~~~----~q~~~g~~G~P~~vfl~pdG 214 (725)
++-++.+||++|+..+ ++|++ .|.. +|+++.++....+... +...+|...+|+++| +|
T Consensus 4 V~vys~~~Cp~C~~aK----------~~L~~~gi~~~~--idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi---~~ 68 (410)
T PRK12759 4 VRIYTKTNCPFCDLAK----------SWFGANDIPFTQ--ISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV---GD 68 (410)
T ss_pred EEEEeCCCCHHHHHHH----------HHHHHCCCCeEE--EECCCChhHHHHHHHHhhccccccCCCCccCeEEE---CC
Confidence 5668899999999876 33444 3443 5555666544322211 112246678899876 45
Q ss_pred Ccc
Q 004888 215 KPL 217 (725)
Q Consensus 215 ~~i 217 (725)
+.+
T Consensus 69 ~~i 71 (410)
T PRK12759 69 VHI 71 (410)
T ss_pred EEE
Confidence 544
No 248
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=85.98 E-value=1.9 Score=36.07 Aligned_cols=59 Identities=10% Similarity=0.127 Sum_probs=33.7
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCcc
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i 217 (725)
++-|+.+||++|+...+ .+ +..+-.|.. +|+++.++.. ..+..+|...+|.. |++ |+.+
T Consensus 3 v~lys~~~Cp~C~~ak~-~L------~~~~i~~~~--~~v~~~~~~~-----~~~~~~g~~~vP~i-fi~--g~~i 61 (72)
T cd03029 3 VSLFTKPGCPFCARAKA-AL------QENGISYEE--IPLGKDITGR-----SLRAVTGAMTVPQV-FID--GELI 61 (72)
T ss_pred EEEEECCCCHHHHHHHH-HH------HHcCCCcEE--EECCCChhHH-----HHHHHhCCCCcCeE-EEC--CEEE
Confidence 45678899999999742 22 223334544 4555444221 22334577889986 454 5554
No 249
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=84.82 E-value=1.2 Score=48.20 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCcee
Q 004888 384 QLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 424 (725)
Q Consensus 384 ~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~Ggfy 424 (725)
.-+..++++|+.++++.|++.+.++++||+. |+.|+||+-
T Consensus 48 ~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~-aQypnGGWP 87 (290)
T TIGR02474 48 TEIRYLAQVYQQEKNAKYRDAARKGIEYLLK-AQYPNGGWP 87 (290)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHh-hhCCCCCcC
Confidence 3466678899999999999999999999997 889999984
No 250
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=84.81 E-value=11 Score=42.22 Aligned_cols=128 Identities=15% Similarity=0.122 Sum_probs=78.2
Q ss_pred HHHHHHHHHhccccCC--CeEEEEec---CCCC---CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q 004888 586 ESAASFIRRHLYDEQT--HRLQHSFR---NGPS---KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL 657 (725)
Q Consensus 586 ~~~a~~l~~~l~d~~~--G~l~~s~~---~g~~---~~~~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~ 657 (725)
.++..|.++|+...+. +.+.+.+. +|.. +...=.|.=-+.+.+|+...+..+++.|++.|..|++.+.++-+
T Consensus 74 d~Lw~Wt~~~L~~~d~~~~L~aW~w~~~~~g~~~v~D~NsASDGDl~IA~ALl~A~~~W~~~~Y~~~A~~ll~~I~~~ev 153 (376)
T PRK11097 74 DKLLNWTENNLAQGDLTARLPAWLWGKKADGTWGVLDANSASDADLWIAYSLLEAGRLWKEPRYTALGTALLKRIAREEV 153 (376)
T ss_pred HHHHHHHHHHHhcCCCcccCceeEeccCCCCCcCCCCCCCCChHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhcc
Confidence 4567777888865432 33333332 2221 22233344468999999999999999999999999999999876
Q ss_pred ccCCC-cccccCCCCCccccccccCCCC--CCCChHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhh
Q 004888 658 DREGG-GYFNTTGEDPSVLLRVKEDHDG--AEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLYLRQ 724 (725)
Q Consensus 658 D~~~G-gyf~t~~~~~~~~~r~k~~~D~--a~PS~Nsv~a~~LlrL~~~t~~~~~~~y~~~A~~~l~~~~ 724 (725)
.+..| +..-.++... .... +. ..||= .+-..+-.++..+++ ..|.+.++..++.+.
T Consensus 154 ~~~~g~g~~LlPG~~g-----F~~~-~~~~~NPSY--~~p~~~~~fa~~~~~---~~W~~l~~~~~~lL~ 212 (376)
T PRK11097 154 VTVPGLGSMLLPGPVG-----FADD-GSWRLNPSY--LPPQLLRRFARFLPG---GPWAALAATNARLLL 212 (376)
T ss_pred cccCCCceeecccccc-----ccCC-CCCeECccc--ccHHHHHHHHHhcCC---chHHHHHHHHHHHHH
Confidence 65544 3333332210 0000 11 12332 355566667888775 579888888776653
No 251
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=84.75 E-value=1e+02 Score=37.29 Aligned_cols=45 Identities=9% Similarity=0.020 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceee
Q 004888 379 LYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 425 (725)
Q Consensus 379 LyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~Ggfys 425 (725)
+-|.|..+.++..+ ....++.+....+++++||++ |+.++|||-+
T Consensus 380 ~ddTa~~L~AL~~~-~~~~~~~~~~~i~ra~~wLl~-~Qn~dGgw~a 424 (635)
T TIGR01507 380 VDDTAVVVWALNGL-RLPDERRRRDAMTKAFRWIAG-MQSSNGGWGA 424 (635)
T ss_pred chhHHHHHHHHHHc-CCCccccchHHHHHHHHHHHH-hcCCCCCEec
Confidence 34688888888776 333566788999999999997 7899999943
No 252
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=83.94 E-value=9.3 Score=41.56 Aligned_cols=138 Identities=11% Similarity=-0.006 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHhccc------------cCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcC--CHHHHHHH
Q 004888 580 EYMEVAESAASFIRRHLYD------------EQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGS--GTKWLVWA 645 (725)
Q Consensus 580 ~yl~~A~~~a~~l~~~l~d------------~~~G~l~~s~~~g~~~~~~~leDyA~li~aLL~LYe~Tg--d~~yL~~A 645 (725)
++-+...++.+||.++... ..+|++-.....+ .....++-++++.+|+.+.+..+ +..+.+..
T Consensus 43 ~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Ggw~y~~~~~---~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i 119 (348)
T cd02889 43 EFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKGGWAFSTANQ---GYPDSDDTAEALKALLRLQKKPPDGKKVSRERL 119 (348)
T ss_pred ccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCCcCcccCcCC---CCCCCCChHHHHHHHHHhhccCcccchhhHHHH
Confidence 4667888999999887631 1122221110000 01224578999999999988863 45666777
Q ss_pred HHHHHHHHHHccccCCCcccccCCCCC-ccc-----cccccCCCCCCCChHHHHHHHHHHHHHhhCCCCchHHHHHHHHH
Q 004888 646 IELQNTQDELFLDREGGGYFNTTGEDP-SVL-----LRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHS 719 (725)
Q Consensus 646 ~~L~~~~~~~F~D~~~Ggyf~t~~~~~-~~~-----~r~k~~~D~a~PS~Nsv~a~~LlrL~~~t~~~~~~~y~~~A~~~ 719 (725)
.+..+.+.... .+ .|+|........ ..+ .-.....|...|+.++.++..|..+.....+. ...+++.+++.
T Consensus 120 ~~a~~~L~~~Q-~~-dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~-~~~~~~~i~~a 196 (348)
T cd02889 120 YDAVDWLLSMQ-NS-NGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECTGSVLEALGLFGKLYPEH-RREIDPAIRRA 196 (348)
T ss_pred HHHHHHHHHhc-cC-CCCEeeecCCccHHHHhcCchhhcCCccCCCCcchHHHHHHHHHHhhhcCCch-HHHHHHHHHHH
Confidence 77777777654 22 466643211100 000 00001123345666777777777766543221 12355555555
Q ss_pred HHHh
Q 004888 720 LYLR 723 (725)
Q Consensus 720 l~~~ 723 (725)
+..+
T Consensus 197 ~~~L 200 (348)
T cd02889 197 VKYL 200 (348)
T ss_pred HHHH
Confidence 5443
No 253
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=83.66 E-value=6.9 Score=44.02 Aligned_cols=123 Identities=15% Similarity=0.139 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCc
Q 004888 584 VAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGG 663 (725)
Q Consensus 584 ~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Gg 663 (725)
...++-+||.+++.-..++.+ .+.|--.=++-|||..|.++|+.-||+.|++|-+.+..-|-.+..--
T Consensus 151 e~~ea~~Wv~~~L~f~~~~~V------------NlFEtTIRvLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~sps~IP 218 (546)
T KOG2431|consen 151 EFEEAREWVEKKLHFEKDRDV------------NLFETTIRVLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFSSPSPIP 218 (546)
T ss_pred HHHHHHHHHHhhcccccccce------------ehhhhhHHHHhhhhhhhccccchhHHHHHHHHHHHHHHhhcCCCCCC
Confidence 345566777776632112211 22233355678999999999999999999999999999984433222
Q ss_pred ccccCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 004888 664 YFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLYLR 723 (725)
Q Consensus 664 yf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~t~~~~~~~y~~~A~~~l~~~ 723 (725)
|=+..-... .-..++-..|. ..+.-...-...-.|+.+||+ +.|.+.|+++.+.+
T Consensus 219 ysdVnL~~~-~A~~p~~~~~S-StaEvttiQlEfr~Ls~ltgd---~kY~~~a~kv~ehi 273 (546)
T KOG2431|consen 219 YSDVNLGTG-TAHPPRWTGDS-STAEVTTIQLEFRYLSRLTGD---PKYEELAEKVTEHI 273 (546)
T ss_pred cceeecCCC-cccCCCCCCcc-chhhheeeeeeHHHHHhhcCC---chHHHHHHHHHHHH
Confidence 322211100 00001111111 111111233456678999998 68999999987654
No 254
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=83.65 E-value=1e+02 Score=37.07 Aligned_cols=81 Identities=20% Similarity=0.322 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCC--C--CC-CC--CchhH-----H-HHHHHHHHHHHHHHccCChHHH
Q 004888 336 EGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDER--W--HV-PH--FEKML-----Y-DQGQLANVYLDAFSLTKDVFYS 402 (725)
Q Consensus 336 ~~~~~~~~TL~~ma~gGi~D~v~GGF~RYs~D~~--W--~v-PH--FEKML-----y-DNA~Ll~~ya~Ay~~t~d~~y~ 402 (725)
++.+-+..-|..|.. -+|||-.|..+.. | .+ |+ |..++ . ..++.|.++..+. . ..+.+.
T Consensus 388 ~~l~~a~~~Ll~~Qn------~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~-~-r~~~~~ 459 (621)
T TIGR01787 388 DRLRDAVNWILGMQS------SNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFG-H-RADEIR 459 (621)
T ss_pred HHHHHHHHHHHHHcC------CCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhc-C-ccHhHH
Confidence 333334444555544 5699988876543 2 12 51 22221 1 2566666665432 1 224577
Q ss_pred HHHHHHHHHHHHhccCCCCceee
Q 004888 403 YICRDILDYLRRDMIGPGGEIFS 425 (725)
Q Consensus 403 ~vA~~~~~fl~~~m~~~~Ggfys 425 (725)
+.++++++||++ .+.++|++|.
T Consensus 460 ~~i~rAl~~L~~-~Q~~DGsw~g 481 (621)
T TIGR01787 460 NVLERALEYLRR-EQRADGSWFG 481 (621)
T ss_pred HHHHHHHHHHHH-hcCCCCCCcc
Confidence 899999999997 5678898863
No 255
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=83.27 E-value=58 Score=35.43 Aligned_cols=91 Identities=13% Similarity=0.094 Sum_probs=58.2
Q ss_pred HHhhhccCCCCCCCcchhhhcHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeE
Q 004888 525 LFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRL 604 (725)
Q Consensus 525 L~~~R~~R~~P~lDdKiitsWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l 604 (725)
+......+...-+|+. -..--|.-|+++++.+++ +.|.+++.++.+||++..+. +|++
T Consensus 29 ~~~~~~~~~~~TiDN~----aT~~e~~fLa~~y~~t~d----------------~~y~~A~~rgld~LL~aQyp--nGGW 86 (290)
T TIGR02474 29 VKNGGGGNESGTIDNG----ATVTEIRYLAQVYQQEKN----------------AKYRDAARKGIEYLLKAQYP--NGGW 86 (290)
T ss_pred hccccCCCCcccccCc----cHHHHHHHHHHHHHhcCc----------------hhHHHHHHHHHHHHHhhhCC--CCCc
Confidence 3333333566778886 122336789999999887 78999999999999988876 5666
Q ss_pred EEEecC-CCCCCCCCcchHH--HHHHHHHHHHHHcC
Q 004888 605 QHSFRN-GPSKAPGFLDDYA--FLISGLLDLYEFGS 637 (725)
Q Consensus 605 ~~s~~~-g~~~~~~~leDyA--~li~aLL~LYe~Tg 637 (725)
-..+.. +.-...-+.+|.+ .++..|.++++..+
T Consensus 87 PQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~ 122 (290)
T TIGR02474 87 PQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKD 122 (290)
T ss_pred CcccCCcCCcccccccCcHHHHHHHHHHHHHHhccC
Confidence 544332 1111223344543 57777777776443
No 256
>PLN02993 lupeol synthase
Probab=82.55 E-value=11 Score=45.97 Aligned_cols=83 Identities=11% Similarity=0.176 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCeEEEEecCC--CCC--CC---CCchhHHH------HHHHHHHHHHHHHccC---Ch
Q 004888 336 EGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDE--RWH--VP---HFEKMLYD------QGQLANVYLDAFSLTK---DV 399 (725)
Q Consensus 336 ~~~~~~~~TL~~ma~gGi~D~v~GGF~RYs~D~--~W~--vP---HFEKMLyD------NA~Ll~~ya~Ay~~t~---d~ 399 (725)
+.+.-+...|-.|.. -+|||.-|-.++ .|. +| ||+..+.| -+..|.+++.-..... .+
T Consensus 513 ~~l~~av~wlL~mQn------~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ 586 (763)
T PLN02993 513 EQLYDSVNLLLSLQS------ENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTK 586 (763)
T ss_pred HHHHHHHHHHHhhcc------CCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhh
Confidence 444555555666655 479999998765 664 45 45555555 4555555543322111 13
Q ss_pred HHHHHHHHHHHHHHHhccCCCCceee
Q 004888 400 FYSYICRDILDYLRRDMIGPGGEIFS 425 (725)
Q Consensus 400 ~y~~vA~~~~~fl~~~m~~~~Ggfys 425 (725)
+.....+++++||++ .+.++|++|.
T Consensus 587 ei~~~i~rAv~yL~~-~Q~~DGSW~G 611 (763)
T PLN02993 587 EIIKSIEKAVQFIES-KQTPDGSWYG 611 (763)
T ss_pred hHHHHHHHHHHHHHH-hcCCCCCccc
Confidence 345688999999987 5788999874
No 257
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=82.33 E-value=5.5 Score=43.07 Aligned_cols=134 Identities=16% Similarity=0.182 Sum_probs=83.9
Q ss_pred HHHHHHHHHHH-HHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC--CCCCCcchHH
Q 004888 547 GLVISSFARAS-KILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDDYA 623 (725)
Q Consensus 547 al~I~aLa~A~-~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~--~~~~~leDyA 623 (725)
+=++.+|+.++ +.+++ +++.+.++++.+++.++....+++ +.. .+.... ...+.-.+-+
T Consensus 170 ~Gi~~~L~~~~~~~~~~----------------~~~~~~i~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~WC~G~~ 231 (355)
T PF05147_consen 170 AGILYALLRLYKKGTKD----------------PEYLKLIEQILNFLLKHFNTDDGG-WPD-NRNNSNYKSRPSWCYGSP 231 (355)
T ss_dssp HHHHHHHCHCCHHT--H----------------HHHHHCHHHHHHHHHHC--TGCCT---S-ECTHHHHHC--SSSSSHH
T ss_pred HHHHHHHHHhhhcccCc----------------hhHHHHHHHHHHHHHHhcCcccCC-CCC-CCCccccccccccccCcH
Confidence 34477888888 57776 789999999999999888554344 222 121110 0234444555
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHh
Q 004888 624 FLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASI 703 (725)
Q Consensus 624 ~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~ 703 (725)
=.+.+++.+++..+++.+.+.++++.+.+.+.-. +. .+...--|++=.+..|..++..
T Consensus 232 Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~----------------~~~~lCHG~aG~~~~l~~~~~~ 289 (355)
T PF05147_consen 232 GILLALLKAYKILDDEEYDEEAEQALESILQKGL------FL----------------NNPSLCHGTAGILEILLDLYKY 289 (355)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH-T------CT----------------TSS-STTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHccc------cC----------------CCCceeCchHHhHHHHHHHHHH
Confidence 5677889999999999999999988887766310 00 1112234556667778899999
Q ss_pred hCCCCchHHHHHHHHHHHHh
Q 004888 704 VAGSKSDYYRQNAEHSLYLR 723 (725)
Q Consensus 704 t~~~~~~~y~~~A~~~l~~~ 723 (725)
+++ +.|.+.+++++..+
T Consensus 290 ~~~---~~~~~~~~~~~~~~ 306 (355)
T PF05147_consen 290 TGD---EEYKELANKLIQKL 306 (355)
T ss_dssp H-----HCCHHHHHHHHHHH
T ss_pred cCC---HHHHHHHHHHHHHH
Confidence 987 56888888886543
No 258
>PTZ00062 glutaredoxin; Provisional
Probab=82.21 E-value=3.5 Score=42.44 Aligned_cols=70 Identities=11% Similarity=0.124 Sum_probs=36.3
Q ss_pred HHHHhhcCCcEEEEEec----cCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCc
Q 004888 131 FAEARKRDVPIFLSIGY----STCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (725)
Q Consensus 131 l~~Ak~e~KpI~l~~g~----~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~ 206 (725)
+++.- ..+||+|..-. ++|++|+.+.. .|+ -.+-.|. .+|+++++++.+.. ..++|...+|.
T Consensus 106 v~~li-~~~~Vvvf~Kg~~~~p~C~~C~~~k~-~L~------~~~i~y~--~~DI~~d~~~~~~l----~~~sg~~TvPq 171 (204)
T PTZ00062 106 IERLI-RNHKILLFMKGSKTFPFCRFSNAVVN-MLN------SSGVKYE--TYNIFEDPDLREEL----KVYSNWPTYPQ 171 (204)
T ss_pred HHHHH-hcCCEEEEEccCCCCCCChhHHHHHH-HHH------HcCCCEE--EEEcCCCHHHHHHH----HHHhCCCCCCe
Confidence 34433 44677777642 68999998752 222 1222344 46776666654433 22334444454
Q ss_pred EEEecCCCCcc
Q 004888 207 SVFLSPDLKPL 217 (725)
Q Consensus 207 ~vfl~pdG~~i 217 (725)
.+ ++ |+.|
T Consensus 172 Vf-I~--G~~I 179 (204)
T PTZ00062 172 LY-VN--GELI 179 (204)
T ss_pred EE-EC--CEEE
Confidence 44 43 5555
No 259
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins.
Probab=82.02 E-value=34 Score=40.74 Aligned_cols=110 Identities=10% Similarity=0.023 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHh-----ccccCCCeEEEE----ecCC-----
Q 004888 546 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRH-----LYDEQTHRLQHS----FRNG----- 611 (725)
Q Consensus 546 Nal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~-----l~d~~~G~l~~s----~~~g----- 611 (725)
.-+.|.++.+.++.++|... ..++...++++.+...+. ..|+ +|.++.. +.|.
T Consensus 350 tLWfi~al~~Y~~~tgD~~~------------l~~l~p~l~~ii~~y~~G~~~~i~~d~-dGLi~~g~~lTWMDa~~g~~ 416 (575)
T TIGR01561 350 SLWAIHAIDKTFAYSQDFLF------------IRDVVDKVLDIIDNYCAGNDFAIGMDN-DLIFHKGAPLTWMDAKVDER 416 (575)
T ss_pred HHHHHHHHHHHHHHhCCHHH------------HHHHHHHHHHHHHHHhcCCCcEEEECC-CccEeCCCCCCCCCCCCCCc
Confidence 35678899999999998321 134555555555543321 1232 3433321 3332
Q ss_pred --CCCCCCCcchHHHHHHHHHH---HHHHcCC--HHHHHHHHHHHHHHHHHccccCCCcccccC
Q 004888 612 --PSKAPGFLDDYAFLISGLLD---LYEFGSG--TKWLVWAIELQNTQDELFLDREGGGYFNTT 668 (725)
Q Consensus 612 --~~~~~~~leDyA~li~aLL~---LYe~Tgd--~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~ 668 (725)
.+...+..|-+|....||.. +.+..|+ ..|.++|+++.+.+.+.||+++.|.+|+.-
T Consensus 417 ~~tPR~G~~VEInALwYnAL~~~a~la~~~g~~a~~y~~~A~~lk~~F~~~FW~~~~g~l~D~v 480 (575)
T TIGR01561 417 AVTPRAGAACEINALWYNALKTAEFLGNELGEDAESLEEKAAGVAKNFAEKFINPDGNCLFDLI 480 (575)
T ss_pred cCCCCCCccHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHhcCCCCCCeeEEEE
Confidence 11222567778877666555 5666666 468999999999999999998877666643
No 260
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=81.13 E-value=22 Score=42.84 Aligned_cols=135 Identities=17% Similarity=0.105 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCCCCC-CCcchHHH
Q 004888 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPSKAP-GFLDDYAF 624 (725)
Q Consensus 547 al~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~-~~g~~~~~-~~leDyA~ 624 (725)
++++.||..++ +.+.|++..+||.+...+ +|.+++.| -+|++.+. -.+|-|++
T Consensus 301 a~~a~AL~~~G-----------------------~~~~a~~~~~~l~~~~~~--~G~~lq~y~vdG~~~~~~iQlD~~g~ 355 (648)
T TIGR01535 301 YQVANAFLAAG-----------------------DVDSALRSLDYLAKVQQD--NGMFPQNSWVDGKPYWTGIQLDETAF 355 (648)
T ss_pred HHHHHHHHHCC-----------------------CHHHHHHHHHHHHHHhcc--CCCcCceeccCCCCCCCCccccHHHH
Confidence 77888887775 457888889999877654 46655554 57877655 55667799
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHh-
Q 004888 625 LISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASI- 703 (725)
Q Consensus 625 li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~- 703 (725)
.|.++..+++... ..+....+.+++++...---++. -.+|...+..|+..|....+|.+-+.+
T Consensus 356 ~i~~~~~l~~~~~-~~~~~~vk~aadfl~~~~p~p~~---------------d~WEer~g~~~~T~a~v~aaL~~Aa~iA 419 (648)
T TIGR01535 356 PILLAYRLHRYDH-AFYDKMLKPAADFIVKNGPKTGQ---------------ERWEEIGGYSPSTLAAEIAGLTAAADIA 419 (648)
T ss_pred HHHHHHHHHHcCc-HHHHHHHHHHHHHHHHcCCCCCC---------------CcccccCCcCchhHHHHHHHHHHHHHHH
Confidence 9998888887543 45556667777776664211111 123434456677777655555555544
Q ss_pred --hCCCC-chHHHHHHHHHHHH
Q 004888 704 --VAGSK-SDYYRQNAEHSLYL 722 (725)
Q Consensus 704 --t~~~~-~~~y~~~A~~~l~~ 722 (725)
.|+.. ...|++.|+++-+.
T Consensus 420 ~~~g~~~~a~~w~~~Ad~i~~~ 441 (648)
T TIGR01535 420 EQNGDAGSAQKYRETADNWQKL 441 (648)
T ss_pred HHcCCcHHHHHHHHHHHHHHHH
Confidence 44421 35688888876543
No 261
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=80.63 E-value=0.97 Score=52.43 Aligned_cols=71 Identities=20% Similarity=0.404 Sum_probs=47.6
Q ss_pred CcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEE---EcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCC
Q 004888 139 VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIK---VDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (725)
Q Consensus 139 KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~Vk---vD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~ 215 (725)
|--+|.|+++||+-|+.... +|+ .+++.+.+.-=.|+ ||--+. .-++.+.. +++.++|+.-++-|+-+
T Consensus 58 ~~~lVEFy~swCGhCr~FAP-tfk--~~A~dl~~W~~vv~vaaVdCA~~-----~N~~lCRe-f~V~~~Ptlryf~~~~~ 128 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAP-TFK--KFAKDLEKWRPVVRVAAVDCADE-----ENVKLCRE-FSVSGYPTLRYFPPDSQ 128 (606)
T ss_pred hhHHHHHHHhhhhhhhhcch-HHH--HHHHHHhcccceeEEEEeeccch-----hhhhhHhh-cCCCCCceeeecCCccc
Confidence 45699999999999999874 665 37777766544444 443211 11223333 28999999999999855
Q ss_pred ccc
Q 004888 216 PLM 218 (725)
Q Consensus 216 ~i~ 218 (725)
...
T Consensus 129 ~~~ 131 (606)
T KOG1731|consen 129 NKT 131 (606)
T ss_pred cCc
Confidence 543
No 262
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=79.83 E-value=7.2 Score=42.64 Aligned_cols=66 Identities=18% Similarity=0.278 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEec----CCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004888 579 KEYMEVAESAASFIRRHLYDEQTHRLQHSFR----NGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDE 654 (725)
Q Consensus 579 ~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~----~g~~~~~~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~ 654 (725)
++.++.-+-+..-|++|-+-|+. |-|-++ .. +.. -.+++.-.-||.+|||+.||+-|+++.+.+..
T Consensus 324 k~aie~heml~qvikkh~flpea--ft~df~vhwaeh-pir-------pefaestyflykat~dp~yl~v~k~iidnink 393 (587)
T KOG2430|consen 324 KEAIEMHEMLFQVIKKHKFLPEA--FTHDFQVHWAEH-PIR-------PEFAESTYFLYKATGDPHYLEVAKQIIDNINK 393 (587)
T ss_pred HHHHHHHHHHHHHHHHcccChHh--hcccceeecccC-CCC-------hhhhhhheeeecccCCchHHHHHHHHHHHHhh
Confidence 67778888888888877666542 222211 11 111 23455556689999999999999999877644
No 263
>PRK10824 glutaredoxin-4; Provisional
Probab=79.65 E-value=10 Score=35.59 Aligned_cols=50 Identities=18% Similarity=0.300 Sum_probs=28.1
Q ss_pred HHHHHHhhcCCcEEEEEec----cCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchH
Q 004888 129 EAFAEARKRDVPIFLSIGY----STCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVD 188 (725)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~----~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~ 188 (725)
+.+++.-++ .||+|+.-. +||++|+...+ +-+-++-.|..| |+++++++.
T Consensus 6 ~~v~~~I~~-~~Vvvf~Kg~~~~p~Cpyc~~ak~-------lL~~~~i~~~~i--di~~d~~~~ 59 (115)
T PRK10824 6 EKIQRQIAE-NPILLYMKGSPKLPSCGFSAQAVQ-------ALSACGERFAYV--DILQNPDIR 59 (115)
T ss_pred HHHHHHHhc-CCEEEEECCCCCCCCCchHHHHHH-------HHHHcCCCceEE--EecCCHHHH
Confidence 444555555 556666543 69999998752 333334456555 444455543
No 264
>PRK10137 alpha-glucosidase; Provisional
Probab=79.05 E-value=1.7e+02 Score=36.17 Aligned_cols=52 Identities=10% Similarity=0.178 Sum_probs=39.1
Q ss_pred HHH-HHHHH---HHHHHHHHccCCh----HHHHHHHHHHHHHHHhccCCCCceeeeccCC
Q 004888 379 LYD-QGQLA---NVYLDAFSLTKDV----FYSYICRDILDYLRRDMIGPGGEIFSAEDAD 430 (725)
Q Consensus 379 LyD-NA~Ll---~~ya~Ay~~t~d~----~y~~vA~~~~~fl~~~m~~~~Ggfysa~DAD 430 (725)
..| ||.|. ...++.+...|++ .|.+.|.+..+.|.+.||+++-|||.-.|-+
T Consensus 577 ~VDLNsyLy~a~~~LA~LAe~LG~~e~A~~~~~~A~~Lr~aIn~~~WDee~GfY~DydL~ 636 (786)
T PRK10137 577 SVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDETTGFYYDVRIE 636 (786)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccCCcCCeEEEEecC
Confidence 344 78777 5566677777764 3778888899999999999998888755544
No 265
>COG4833 Predicted glycosyl hydrolase [Carbohydrate transport and metabolism]
Probab=78.28 E-value=3.9 Score=43.52 Aligned_cols=88 Identities=22% Similarity=0.264 Sum_probs=59.6
Q ss_pred cHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecC-CCCCCCCCcchHH
Q 004888 545 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN-GPSKAPGFLDDYA 623 (725)
Q Consensus 545 WNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~-g~~~~~~~leDyA 623 (725)
|.+..+.-+..|+.-... +.=++.+++...-++ .++ |......+-+|-+
T Consensus 47 WqAHlldclvDA~lR~~~----------------~Arr~ri~~T~r~~~--------------vRN~G~l~shdyYDDma 96 (377)
T COG4833 47 WQAHLLDCLVDAQLRDPQ----------------PARRARINRTVRSHR--------------VRNFGWLNSHDYYDDMA 96 (377)
T ss_pred HHHHHHHHHHHHHhcCCc----------------HhHHHHHHHHHhhhh--------------ccccccccchhhhhhHH
Confidence 567788888888865443 344555555442221 122 3345567888999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHccccCCCcc
Q 004888 624 FLISGLLDLYEFGSGTKWLVWAI-ELQNTQDELFLDREGGGY 664 (725)
Q Consensus 624 ~li~aLL~LYe~Tgd~~yL~~A~-~L~~~~~~~F~D~~~Ggy 664 (725)
+++.|+-.+|.++| .+++.|. .+++.+.+-..|..+|++
T Consensus 97 WlALAl~Ra~Kv~g--vr~~~alp~l~~~~v~Gw~D~~gGg~ 136 (377)
T COG4833 97 WLALALERADKVAG--VRRRRALPKLTNQFVEGWVDEDGGGI 136 (377)
T ss_pred HHHHHHHhhhcccc--eeccccchhHHHhhhhccccccCCcc
Confidence 99999999999999 6776665 556666676778777774
No 266
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=77.12 E-value=2.7 Score=45.45 Aligned_cols=40 Identities=25% Similarity=0.207 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCcee
Q 004888 384 QLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 424 (725)
Q Consensus 384 ~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~Ggfy 424 (725)
.-|..++++|+.++|+.|++.+.+.++||+. .+-|+||+-
T Consensus 43 ~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~-aQypnGGWP 82 (289)
T PF09492_consen 43 TEIRFLARVYQATKDPRYREAFLKGLDYLLK-AQYPNGGWP 82 (289)
T ss_dssp HHHHHHHHHHHHCG-HHHHHHHHHHHHHHHH-HS-TTS--B
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHH-hhCCCCCCC
Confidence 4567789999999999999999999999996 667899983
No 267
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=76.29 E-value=95 Score=31.69 Aligned_cols=76 Identities=13% Similarity=0.078 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhc
Q 004888 337 GQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDM 416 (725)
Q Consensus 337 ~~~~~~~TL~~ma~gGi~D~v~GGF~RYs~D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m 416 (725)
..+++.++++.+.. .. +.+|||--+.... +-..++-+..+.++..+.... +......+++++||.+.
T Consensus 50 ~~~~~~~~~~~l~~--~q-~~dG~~~~~~~~~-------~~~~~~T~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~~~- 116 (300)
T cd00688 50 ADENIEKGIQRLLS--YQ-LSDGGFSGWGGND-------YPSLWLTAYALKALLLAGDYI--AVDRIDLARALNWLLSL- 116 (300)
T ss_pred chHHHHHHHHHHHh--cc-CCCCCccCCCCCC-------CcchHhHHHHHHHHHHcCCcc--ccCHHHHHHHHHHHHHc-
Confidence 44555555555544 11 4678876322111 344556777777777655433 45677889999999974
Q ss_pred cCCCCceee
Q 004888 417 IGPGGEIFS 425 (725)
Q Consensus 417 ~~~~Ggfys 425 (725)
+.++|||..
T Consensus 117 q~~dG~~~~ 125 (300)
T cd00688 117 QNEDGGFRE 125 (300)
T ss_pred cCCCCCeee
Confidence 567788754
No 268
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=75.87 E-value=35 Score=41.06 Aligned_cols=134 Identities=20% Similarity=0.154 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC---------CCCC
Q 004888 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS---------KAPG 617 (725)
Q Consensus 547 al~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~---------~~~~ 617 (725)
++++.||++++.. + +++-...+++.+||+++-.....|.....+++..+ ....
T Consensus 310 ala~~AL~e~g~~--~----------------~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~~~~~~~GGW~f~~~~~~~p 371 (634)
T TIGR03463 310 AFAVQALAATPET--A----------------GRHRRMLERAARFLEANQMLEDTAEPQRFFRDPAKGGWCFSDGDHGWP 371 (634)
T ss_pred HHHHHHHHHcCCC--c----------------hhhhHHHHHHHHHHHHhcCCcCCCCchhcCCCCCCCccccccCCCCCC
Confidence 8889999886432 1 34557778899999877653222221111222111 2234
Q ss_pred CcchHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHHHHHccccCCCccccc-CCCCCccccc--cc-----cCCC
Q 004888 618 FLDDYAFLISGLLDLYEFGS------GTKWLVWAIELQNTQDELFLDREGGGYFNT-TGEDPSVLLR--VK-----EDHD 683 (725)
Q Consensus 618 ~leDyA~li~aLL~LYe~Tg------d~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t-~~~~~~~~~r--~k-----~~~D 683 (725)
..||-|.++.||+.+..... ..+.+..|.+.+..+. +++ |||..- ....+..+-. .. ...|
T Consensus 372 dsD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~~Q----n~d-GGw~~y~~~~~~~~l~~~~~~~~f~~~~~d 446 (634)
T TIGR03463 372 VSDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFILSRQ----NED-GGFGTYERQRGPRVLELLNPSEMFSTCMTD 446 (634)
T ss_pred ccccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHHhc----CCC-CCEeccCCCCcHHHHhcCChHHhhcccccC
Confidence 56788999999998865322 1234555555443332 233 555421 1111111000 00 1235
Q ss_pred CCCCChHHHHHHHHHHHHHh
Q 004888 684 GAEPSGNSVSVINLVRLASI 703 (725)
Q Consensus 684 ~a~PS~Nsv~a~~LlrL~~~ 703 (725)
.+++..++.+...|..+...
T Consensus 447 ~~~~d~Ta~~l~aL~~~~~~ 466 (634)
T TIGR03463 447 VSYVECTSSCLQALAAWRKH 466 (634)
T ss_pred CCcCcHHHHHHHHHHHHhhc
Confidence 66777777777777666543
No 269
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=75.74 E-value=11 Score=31.97 Aligned_cols=16 Identities=19% Similarity=0.482 Sum_probs=13.8
Q ss_pred EEEeccCChhhHhhhh
Q 004888 143 LSIGYSTCHWCHVMEV 158 (725)
Q Consensus 143 l~~g~~wC~~C~~Me~ 158 (725)
..|....|+||..++.
T Consensus 2 ~~f~d~~Cp~C~~~~~ 17 (98)
T cd02972 2 VEFFDPLCPYCYLFEP 17 (98)
T ss_pred eEEECCCCHhHHhhhH
Confidence 5678889999999985
No 270
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=75.00 E-value=7.7 Score=39.89 Aligned_cols=53 Identities=34% Similarity=0.509 Sum_probs=35.7
Q ss_pred hcCCcEEEEEeccCChh-hHhhhhhccCCHHHHHHHh----c--CcEEEEEcCCC-CcchHHHH
Q 004888 136 KRDVPIFLSIGYSTCHW-CHVMEVESFEDEGVAKLLN----D--WFVSIKVDREE-RPDVDKVY 191 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~-C~~Me~e~f~d~eVa~~ln----~--~FV~VkvD~ee-~pd~~~~y 191 (725)
-+|||.+|+|++..|+- |..+-.+. ..+.+.+. . ++|.|.||-+. .|+..+.|
T Consensus 65 l~Gk~~lv~FgyT~CpdVCP~~l~~l---~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y 125 (207)
T COG1999 65 LKGKPSLVFFGYTHCPDVCPTTLAEL---KALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKY 125 (207)
T ss_pred cCCCEEEEEeecCCCCccChHHHHHH---HHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHH
Confidence 37999999999999984 88875432 23344443 2 37888888664 45655555
No 271
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=74.45 E-value=38 Score=39.62 Aligned_cols=35 Identities=11% Similarity=0.079 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc
Q 004888 624 FLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLD 658 (725)
Q Consensus 624 ~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D 658 (725)
.+++...-||++|+|+-||+.-+.+.+.+...+.-
T Consensus 375 ElvEStyyLYrATkdp~yL~vG~~~l~sLe~~~k~ 409 (622)
T KOG2429|consen 375 ELVESTYYLYRATKDPFYLHVGEDMLKSLEKYTKV 409 (622)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccC
Confidence 59999999999999999999999999988777643
No 272
>PRK10137 alpha-glucosidase; Provisional
Probab=74.01 E-value=2.3e+02 Score=35.10 Aligned_cols=46 Identities=13% Similarity=0.272 Sum_probs=37.4
Q ss_pred HHHH---HHHHHHHHHcCCH----HHHHHHHHHHHHHHHHccccCCCcccccC
Q 004888 623 AFLI---SGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNTT 668 (725)
Q Consensus 623 A~li---~aLL~LYe~Tgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~ 668 (725)
+++. ..|.++++..|++ +|.++|+++.+.+.+.|||++.|.||+..
T Consensus 582 syLy~a~~~LA~LAe~LG~~e~A~~~~~~A~~Lr~aIn~~~WDee~GfY~Dyd 634 (786)
T PRK10137 582 SYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDETTGFYYDVR 634 (786)
T ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccCCcCCeEEEEe
Confidence 5555 6777788888875 48889999999999999999999887543
No 273
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=73.05 E-value=21 Score=39.14 Aligned_cols=95 Identities=19% Similarity=0.177 Sum_probs=64.6
Q ss_pred hhhcHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCC--CeEE--EE--ecCCCCCC
Q 004888 542 IVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQT--HRLQ--HS--FRNGPSKA 615 (725)
Q Consensus 542 itsWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~--G~l~--~s--~~~g~~~~ 615 (725)
-|+-.|-+|.-++..++.+|+ +-|-+.|+++.+|+++.-....+ |... |+ |....+.+
T Consensus 183 ctac~gtlilefaals~~tg~----------------~ifee~arkaldflwekr~rss~l~g~~inihsgdw~rkdsgi 246 (587)
T KOG2430|consen 183 CTACAGTLILEFAALSRFTGA----------------PIFEEKARKALDFLWEKRHRSSDLMGTTINIHSGDWTRKDSGI 246 (587)
T ss_pred hhhccchhhhhHHHHhhccCC----------------hhhHHHHHHHHHHHHHHhcccccccceeEEeccCcceecccCc
Confidence 456667889999999999998 56899999999999876554322 2221 11 11122333
Q ss_pred CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004888 616 PGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDEL 655 (725)
Q Consensus 616 ~~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~ 655 (725)
.+-.+.| -+=+|..|-+.||+.||++-.+-.+.+...
T Consensus 247 gagidsy---yey~lkayillgddsfldrfn~hydai~ry 283 (587)
T KOG2430|consen 247 GAGIDSY---YEYLLKAYILLGDDSFLDRFNKHYDAIKRY 283 (587)
T ss_pred CcchHHH---HHHHHHHhheeccHHHHHHHHHHHHHHHHH
Confidence 3334444 344667788889999999988887777654
No 274
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=72.65 E-value=64 Score=36.07 Aligned_cols=136 Identities=15% Similarity=0.109 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc-----
Q 004888 583 EVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL----- 657 (725)
Q Consensus 583 ~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~----- 657 (725)
+.|+.+.....+... .|.+.+..+.|....-+..|---+++.++-+.++.|||..+++......+.+.+...
T Consensus 50 ~~a~~~L~~~~~~~~---~G~ipn~~~~~~~~~Y~s~Dat~wfl~~l~~Y~~~t~D~~~l~~~~~~i~~il~~~~~g~~~ 126 (370)
T PF06202_consen 50 EEARNILATFAGTQR---HGLIPNELRDGEEPRYNSVDATLWFLIALQEYYRWTGDYSFLRELYPAIEEILEWYADGTDF 126 (370)
T ss_pred HHHHHHHHHHHHhhh---cCcccCcccCCCCCCCCCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 445555544444332 477777766655444455666678999999999999999998766654444444432
Q ss_pred ----ccCCCcccccCCCCCccccccccC---------CCCCCCChHHHHHHHHHHHHHhh---CCCCchHHHHHHHHHHH
Q 004888 658 ----DREGGGYFNTTGEDPSVLLRVKED---------HDGAEPSGNSVSVINLVRLASIV---AGSKSDYYRQNAEHSLY 721 (725)
Q Consensus 658 ----D~~~Ggyf~t~~~~~~~~~r~k~~---------~D~a~PS~Nsv~a~~LlrL~~~t---~~~~~~~y~~~A~~~l~ 721 (725)
|+++| +...... ..-.-+++. -+++.-.-|+....+|..++.+. +++....|++.|+++-+
T Consensus 127 ~~~~d~~~g-l~~~~~~--~~~~tWmD~~~~g~~~tpr~g~~vEIqal~y~AL~~~~~la~~~~~~~a~~~~~~A~~lk~ 203 (370)
T PF06202_consen 127 GIRVDPEDG-LIYSGNG--LNNQTWMDARNDGRPVTPRDGAAVEIQALWYNALRFAAELAEKFGDELAARYREWAERLKE 203 (370)
T ss_pred ccccccCCC-eeecCCC--CCCCCccccccCCccccCCCCcchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 22222 2221110 000111111 11222234555455555544443 33234689999999988
Q ss_pred Hhh
Q 004888 722 LRQ 724 (725)
Q Consensus 722 ~~~ 724 (725)
.|.
T Consensus 204 ~F~ 206 (370)
T PF06202_consen 204 SFE 206 (370)
T ss_pred HHH
Confidence 774
No 275
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=70.69 E-value=4.3 Score=38.05 Aligned_cols=23 Identities=9% Similarity=0.215 Sum_probs=19.4
Q ss_pred hcCCcEEEEEeccCChhhHhhhh
Q 004888 136 KRDVPIFLSIGYSTCHWCHVMEV 158 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~C~~Me~ 158 (725)
.+.+++++.|+-.+|++|+.|+.
T Consensus 3 ~~a~~~i~~f~D~~Cp~C~~~~~ 25 (154)
T cd03023 3 PNGDVTIVEFFDYNCGYCKKLAP 25 (154)
T ss_pred CCCCEEEEEEECCCChhHHHhhH
Confidence 45677888899999999999973
No 276
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=70.08 E-value=29 Score=37.66 Aligned_cols=102 Identities=14% Similarity=0.043 Sum_probs=61.0
Q ss_pred CCCCCcchhhhcHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecC-CC
Q 004888 534 RPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN-GP 612 (725)
Q Consensus 534 ~P~lDdKiitsWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~-g~ 612 (725)
..-+|+. -...-|.-|+++++.++| ++|.+++.+..+||++.-+. +|++-..|-. +.
T Consensus 33 ~~TiDN~----aT~~ei~fLa~~y~~t~d----------------~~y~~A~~kgl~ylL~aQyp--nGGWPQ~yP~~~~ 90 (289)
T PF09492_consen 33 NSTIDND----ATTTEIRFLARVYQATKD----------------PRYREAFLKGLDYLLKAQYP--NGGWPQFYPLRGG 90 (289)
T ss_dssp SCE-GGG----TTHHHHHHHHHHHHHCG-----------------HHHHHHHHHHHHHHHHHS-T--TS--BSECS--SG
T ss_pred cCcccCh----hHHHHHHHHHHHHHHhCC----------------hHHHHHHHHHHHHHHHhhCC--CCCCCccCCCCCC
Confidence 3455665 223457889999999988 79999999999999998886 6777766532 11
Q ss_pred CCCCCCcchHH--HHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHHcc
Q 004888 613 SKAPGFLDDYA--FLISGLLDLYEFGSGT---------KWLVWAIELQNTQDELFL 657 (725)
Q Consensus 613 ~~~~~~leDyA--~li~aLL~LYe~Tgd~---------~yL~~A~~L~~~~~~~F~ 657 (725)
-...-+.+|-| -++.=|.+.++..++. ++.+...+-.+.+...-+
T Consensus 91 Y~~~ITfNDdam~~vl~lL~~v~~~~~~~~~v~~~~~~r~~~A~~kgi~ciL~tQi 146 (289)
T PF09492_consen 91 YHDHITFNDDAMVNVLELLRDVAEGKGDFAFVDESLRARARAAVDKGIDCILKTQI 146 (289)
T ss_dssp GGGSEE-GGGHHHHHHHHHHHHHCT-TTSTTS-HHHHHHHHHHHHHHHHHHHHHS-
T ss_pred CCCceEEccHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 12223444554 4667777777777766 444444444444444433
No 277
>PLN02308 endoglucanase
Probab=69.88 E-value=2.3e+02 Score=33.25 Aligned_cols=112 Identities=18% Similarity=0.209 Sum_probs=67.7
Q ss_pred cCCCC---CCCCCCCChhHHH--HHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCeEEEEecC-----C
Q 004888 299 RFGGF---GSAPKFPRPVEIQ--MMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVD-----E 368 (725)
Q Consensus 299 ~~GGf---g~apKFP~~~~l~--~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~ma~gGi~D~v~GGF~RYs~D-----~ 368 (725)
.-||| |.--||-.|..+. +|+..+...++.- ..+.+.+++.+.--||=|.+ .++. .|+||.-..| .
T Consensus 72 lsGGWyDAGD~~Ky~~p~a~s~t~L~w~~~e~~~~~-~~e~~~~ldeikw~~D~llk--m~~~-~~~vy~qVg~~~~dh~ 147 (492)
T PLN02308 72 LTGGYYDAGDNVKFGFPMAFTTTLMSWSIIDFGRTM-GPELENAVKAVKWATDYLMK--ATAI-PNVVYVQVGDAYSDHN 147 (492)
T ss_pred CCCCceeCCCcCeecCchHHHHHHHHHHHHHhHhhh-cchhHHHHHHHHHHHHHHHH--hcCC-CCeEEEEecCCCCCcc
Confidence 45888 5667887764332 2222222211111 12335677777777777776 4553 5777754444 4
Q ss_pred CCCCCCCchh---HH----------HHHHHHHHHHHHHHccC--ChH----HHHHHHHHHHHHHH
Q 004888 369 RWHVPHFEKM---LY----------DQGQLANVYLDAFSLTK--DVF----YSYICRDILDYLRR 414 (725)
Q Consensus 369 ~W~vPHFEKM---Ly----------DNA~Ll~~ya~Ay~~t~--d~~----y~~vA~~~~~fl~~ 414 (725)
.|..|+-.++ +| --+..+.+++.|+++++ |+. +++.|+++.+|..+
T Consensus 148 ~W~~Pe~~~~~R~~y~~~~~~pgSd~a~~~AAAlA~as~vf~~~D~~YA~~lL~~Ak~ly~fa~~ 212 (492)
T PLN02308 148 CWERPEDMDTLRTVYKIDPSHPGSDVAGETAAALAAASIVFRKRDPAYSRLLLDRAVRVFAFADK 212 (492)
T ss_pred CCCChhHcCCcceEEecCCCCCcchHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHH
Confidence 5666653311 11 24678889999999988 555 46788888999887
No 278
>PLN02266 endoglucanase
Probab=68.14 E-value=2.2e+02 Score=33.58 Aligned_cols=123 Identities=11% Similarity=-0.033 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCC--CCCCc-------------------chHHHHHHHHHHHHHHcC
Q 004888 579 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK--APGFL-------------------DDYAFLISGLLDLYEFGS 637 (725)
Q Consensus 579 ~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~--~~~~l-------------------eDyA~li~aLL~LYe~Tg 637 (725)
+.+++.++=..+|+++.... +|.+++...++..+ .++.+ +--+.++.+|...+.+-.
T Consensus 130 pd~Ldelkw~~D~llk~~~~--~~~vy~qVg~~~~Dh~~W~~Pe~~~~~R~~y~i~~~~pgsd~a~e~AAALAaas~vfk 207 (510)
T PLN02266 130 QNAKDAIRWATDYLLKATAH--PDTIYVQVGDANKDHACWERPEDMDTPRSVFKVDKNTPGSDVAAETAAALAAASLVFR 207 (510)
T ss_pred HHHHHHHHHHHHHHHHhccC--CCeEEEEeCCCCCCcccCCChhhcCCCCeeEEeCCCCCchHHHHHHHHHHHHHHHHhc
Confidence 78999999999999876543 57788875443211 01111 122345556666666655
Q ss_pred --CH----HHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCCh---HHHHHHHHHHHHHhhCCCC
Q 004888 638 --GT----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSG---NSVSVINLVRLASIVAGSK 708 (725)
Q Consensus 638 --d~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~---Nsv~a~~LlrL~~~t~~~~ 708 (725)
|+ +.|+.|+++++....+ .|.|....... ...+ ..|. .--++-+-..|+..||+
T Consensus 208 ~~D~~yA~~~L~~Ak~ly~fa~~~-----~g~y~~~~~~~-------~~~~---y~s~s~~~DEl~WAAawLy~ATGd-- 270 (510)
T PLN02266 208 KSDPTYSKLLVRRAIRVFQFADKY-----RGAYSNGLKPD-------VCPF---YCSYSGYQDELLWGAAWLHKATKN-- 270 (510)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhC-----CCCccCCCCcc-------cCCC---cccCCcchHHHHHHHHHHHHHhCC--
Confidence 44 4688888888887653 22221110000 0000 0110 11344455788999997
Q ss_pred chHHHHHHHHHHH
Q 004888 709 SDYYRQNAEHSLY 721 (725)
Q Consensus 709 ~~~y~~~A~~~l~ 721 (725)
..|.+.++....
T Consensus 271 -~~Yl~~~~~~~~ 282 (510)
T PLN02266 271 -PTYLNYIQVNGQ 282 (510)
T ss_pred -HHHHHHHHHHHh
Confidence 789998876543
No 279
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=68.12 E-value=10 Score=32.79 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=39.5
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHH-hcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecC
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLL-NDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP 212 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~l-n~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~p 212 (725)
++.++.+.||-|..++. .+.+.. +..|....||+++++++...| + .-.|...+-++
T Consensus 2 l~l~~k~~C~LC~~a~~------~L~~~~~~~~~~l~~vDI~~d~~l~~~Y--------~-~~IPVl~~~~~ 58 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKE------ILEEVAAEFPFELEEVDIDEDPELFEKY--------G-YRIPVLHIDGI 58 (81)
T ss_dssp EEEEE-SSSHHHHHHHH------HHHHCCTTSTCEEEEEETTTTHHHHHHS--------C-TSTSEEEETT-
T ss_pred EEEEcCCCCChHHHHHH------HHHHHHhhcCceEEEEECCCCHHHHHHh--------c-CCCCEEEEcCc
Confidence 56789999999999873 444432 346899999999888876666 3 36798665553
No 280
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=68.02 E-value=33 Score=41.19 Aligned_cols=55 Identities=20% Similarity=0.256 Sum_probs=38.4
Q ss_pred CCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCcee
Q 004888 357 VGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 424 (725)
Q Consensus 357 v~GGF~RYs~D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~Ggfy 424 (725)
.+|+|+. .|.+.+ .|..+..+.+++.+.+...+. ..++++++||++. +.++||+.
T Consensus 475 ~DGsw~g-----~wg~~y----~YgT~~al~aL~~~G~~~~~~---~~i~rA~~~L~~~-Q~~DGGWg 529 (621)
T TIGR01787 475 ADGSWFG-----RWGVNY----TYGTGFVLSALAAAGRTYRNC---PEVQKACDWLLSR-QMPDGGWG 529 (621)
T ss_pred CCCCCcc-----cCCCCC----chhHHHHHHHHHHhCCcccCC---HHHHHHHHHHHhh-cCCCCCCC
Confidence 4688763 576653 466777788887765443332 7889999999985 67789884
No 281
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=67.87 E-value=77 Score=36.69 Aligned_cols=195 Identities=16% Similarity=0.052 Sum_probs=89.1
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhhhccCCC--CCCCcchhhhcHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHH
Q 004888 503 SASKLGMPLEKYLNILGECRRKLFDVRSKRPR--PHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKE 580 (725)
Q Consensus 503 ~a~~~g~~~e~~~~~l~~~r~kL~~~R~~R~~--P~lDdKiitsWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~ 580 (725)
.+..|..+.+.+.++.+.++.-++..-..-+- |.+|++ ..|.|=+......++-.+++ .
T Consensus 108 ~~g~F~~sd~~ln~i~~~~~~T~~~n~~~~~~Dcp~RdER--~~w~GD~~~~~~~~~~~~~~----------------~- 168 (509)
T PF05592_consen 108 QAGSFSCSDPLLNRIWEMSRRTLRSNMQDVFTDCPKRDER--LGWTGDARVSALTAYYSFGD----------------A- 168 (509)
T ss_dssp ---EEEES-HHHHHHHHHHHHHHHHTBSSSB-SBTTT-T-----BHHHHHHHHHHHHCCT------------------H-
T ss_pred ccCceecCcHHHHHHHHHHHHHHHhhCCCCceECcchhhh--cCCcchHHHHHHHHHHhCCc----------------H-
Confidence 34556677788888888887777654433222 667555 34665543333333333443 2
Q ss_pred HHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc
Q 004888 581 YMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDY-AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDR 659 (725)
Q Consensus 581 yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~leDy-A~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~ 659 (725)
...++..+.+...... +|.+....-... ......-+| .+.+..+-++|+.|||.++++..-...+...+.+...
T Consensus 169 --~l~~~~l~~~~~~q~~--~G~~p~~~P~~~-~~~~~~~~w~l~~i~~~~~~y~~tGD~~~l~~~~~~~~~~l~~~~~~ 243 (509)
T PF05592_consen 169 --ALYRKWLRDFADSQRP--DGLLPSVAPSYG-GGGFGIPDWSLAWIIIPWDYYLYTGDREFLEEYYPAMKRYLDYLERR 243 (509)
T ss_dssp --HHHHHHHHHHHGGTTT--STT-SSBSS----SSGGGBHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHhhcc--cCCceEEecccC-CCCCCCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 2344444444443322 455533211100 111222344 3678899999999999988765554444444443321
Q ss_pred CCC---cccccCCCCCccccccccCCCCCCC---ChHHH---HHHHHHHHHHhhCCC-CchHHHHHHHHHHHHhh
Q 004888 660 EGG---GYFNTTGEDPSVLLRVKEDHDGAEP---SGNSV---SVINLVRLASIVAGS-KSDYYRQNAEHSLYLRQ 724 (725)
Q Consensus 660 ~~G---gyf~t~~~~~~~~~r~k~~~D~a~P---S~Nsv---~a~~LlrL~~~t~~~-~~~~y~~~A~~~l~~~~ 724 (725)
... +.....-.|+.... ...+...+ ..|+. ++..+.+|+.++|+. ....|+++|+++-+++.
T Consensus 244 ~~~~~~~~~~~~~~DW~~~~---~~~~~~~~~~~~~~~~~~~~l~~~a~lA~~lg~~~~a~~y~~~a~~lk~a~~ 315 (509)
T PF05592_consen 244 VDDGLDGLPGWGFGDWLAPG---NDGDGPTPGATITNALYYYALRAAAELAEALGKDEDAAEYRARAERLKAAIN 315 (509)
T ss_dssp B-TSSB-CCSB--S-SS-------TT---SCCEEHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHH
T ss_pred CCccccCCCCCceeecCCcc---CcccccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 111 00000001111000 01111111 24553 555577888888852 22469999999877763
No 282
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=67.21 E-value=82 Score=32.14 Aligned_cols=128 Identities=14% Similarity=0.015 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHHhhccccCCCCCCCCCC--CChhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCC
Q 004888 281 PQNALRLCAEQLSKSYDSRFGGFGSAPKF--PRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVG 358 (725)
Q Consensus 281 ~~~~~~~~~~~l~~~~D~~~GGfg~apKF--P~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~ma~gGi~D~v~ 358 (725)
....++++++.|.+.- ...|||+..+.- |.+..-.+.+.........+ ....+.+.+.++-+... ...+
T Consensus 50 ~~~~~~~~~~~l~~~q-~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~-----~~~~~~~~~~~~~l~~~---q~~d 120 (300)
T cd00688 50 ADENIEKGIQRLLSYQ-LSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYI-----AVDRIDLARALNWLLSL---QNED 120 (300)
T ss_pred chHHHHHHHHHHHhcc-CCCCCccCCCCCCCcchHhHHHHHHHHHHcCCcc-----ccCHHHHHHHHHHHHHc---cCCC
Confidence 3455677777777644 457999887764 33332222222221111000 01122333333333331 2346
Q ss_pred CeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCce
Q 004888 359 GGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEI 423 (725)
Q Consensus 359 GGF~RYs~D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~Ggf 423 (725)
|||..+..... ..++-+.-....+..+.+++.+..... ...+.++++||.+.. .++|||
T Consensus 121 G~~~~~~~~~~-~~~~~~~~~~~t~~al~aL~~~~~~~~----~~~~~~~~~~l~~~q-~~~g~~ 179 (300)
T cd00688 121 GGFREDGPGNH-RIGGDESDVRLTAYALIALALLGKLDP----DPLIEKALDYLLSCQ-NYDGGF 179 (300)
T ss_pred CCeeeecCCCC-cccCCCCcccHHHHHHHHHHHcCCCCC----cHHHHHHHHHHHHHh-cCCCCc
Confidence 78775432211 012223344457778888877665443 567889999999854 678888
No 283
>PLN03012 Camelliol C synthase
Probab=66.77 E-value=39 Score=41.41 Aligned_cols=65 Identities=17% Similarity=0.082 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEec---CCC----CCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004888 583 EVAESAASFIRRHLYDEQTHRLQHSFR---NGP----SKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQ 649 (725)
Q Consensus 583 ~~A~~~a~~l~~~l~d~~~G~l~~s~~---~g~----~~~~~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~ 649 (725)
+..+++.+||++.-.. +|+...++. +.. .....+..--|+++.||+...+...++.-+.+|.+.+
T Consensus 639 ~~Irrav~fLls~Q~~--DGGWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~L 710 (759)
T PLN03012 639 EAIRKGVHFLLAAQKD--NGGWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLI 710 (759)
T ss_pred HHHHHHHHHHHHhcCC--CCCcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 5677888999877654 465555432 211 0112455666999999998866555655676666554
No 284
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=66.08 E-value=18 Score=35.08 Aligned_cols=93 Identities=15% Similarity=0.202 Sum_probs=58.8
Q ss_pred hhhhcccCCCCccccchHHHHHHHhhcCCc-EEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHH
Q 004888 111 PYLLQHAHNPVDWFAWGEEAFAEARKRDVP-IFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDK 189 (725)
Q Consensus 111 pyl~~ha~~~V~W~~~~~eAl~~Ak~e~Kp-I~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~ 189 (725)
-++.++....|.= ...+-+...-..++| +++.|..........+.+.. .++++-....++.+.+|.+..+.+.+
T Consensus 69 ~fI~~~~~P~v~~--~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~a~~~~~~~~f~~~d~~~~~~~~~ 143 (184)
T PF13848_consen 69 KFIKKNSFPLVPE--LTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKEL---QDIAKKFKGKINFVYVDADDFPRLLK 143 (184)
T ss_dssp HHHHHHSSTSCEE--ESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHH---HHHHHCTTTTSEEEEEETTTTHHHHH
T ss_pred HHHHHhccccccc--cchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHH---HHHHHhcCCeEEEEEeehHHhHHHHH
Confidence 3445544444322 234567777777877 66666655566666655322 46666666679999999986555443
Q ss_pred HHHHHHHHhcCCC--CcCcEEEecCCCCc
Q 004888 190 VYMTYVQALYGGG--GWPLSVFLSPDLKP 216 (725)
Q Consensus 190 ~y~~~~q~~~g~~--G~P~~vfl~pdG~~ 216 (725)
.+ |.. .+|..+++++....
T Consensus 144 ~~--------~i~~~~~P~~vi~~~~~~~ 164 (184)
T PF13848_consen 144 YF--------GIDEDDLPALVIFDSNKGK 164 (184)
T ss_dssp HT--------TTTTSSSSEEEEEETTTSE
T ss_pred Hc--------CCCCccCCEEEEEECCCCc
Confidence 22 544 89999999976543
No 285
>PF01270 Glyco_hydro_8: Glycosyl hydrolases family 8; InterPro: IPR002037 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 8 GH8 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); lichenase (3.2.1.73 from EC); chitosanase (3.2.1.132 from EC). These enzymes were formerly known as cellulase family D []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1IS9_A 1CEM_A 1KWF_A 1V5D_B 1V5C_A 1WU4_A 2DRS_A 1WU6_A 2DRO_A 1WU5_A ....
Probab=65.87 E-value=19 Score=39.86 Aligned_cols=100 Identities=10% Similarity=0.014 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCCCCCCCcchHHHH
Q 004888 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPSKAPGFLDDYAFL 625 (725)
Q Consensus 547 al~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~-~~g~~~~~~~leDyA~l 625 (725)
-.++.||+.|++.-|+. ...|+..|+.+...++++... .|+..-.. ..|-.......-+-++.
T Consensus 116 l~iA~ALl~A~~~Wg~~--------------~~~y~~~A~~~~~~i~~~~v~--~g~~~llpG~~~f~~~~~~~~npSY~ 179 (342)
T PF01270_consen 116 LDIAYALLLAARRWGDG--------------AYNYLAEALAIINAIKTHEVN--PGRYVLLPGDWGFNSDDYWTTNPSYF 179 (342)
T ss_dssp HHHHHHHHHHHHHHTSS--------------SSHHHHHHHHHHHHHHHHHEE--TTEEEECSSSSSCBTTSEEEEEGGGS
T ss_pred HHHHHHHHHHHhhcCCc--------------chhHHHHHHHHHHHHHhheeC--CCceEEeccccccCCCCceEeChhhc
Confidence 57789999999999852 157999999999998888766 34222111 11111110111122333
Q ss_pred H-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCc
Q 004888 626 I-SGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGG 663 (725)
Q Consensus 626 i-~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Gg 663 (725)
+ .++..++++++++.|.+.+....+.+.+.. .+..|-
T Consensus 180 ~~pa~~~f~~~~~~~~W~~v~~~~~~ll~~~~-~~~tGL 217 (342)
T PF01270_consen 180 MPPAFRAFAAATGDPRWNEVADSSYALLQKAS-FPKTGL 217 (342)
T ss_dssp -HHHHHHHHHHHCCTHHHHHHHHHHHHHHHHH-TTTTTB
T ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc-ccCCCC
Confidence 3 777889999999999999998888877665 334443
No 286
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=64.39 E-value=19 Score=29.31 Aligned_cols=62 Identities=11% Similarity=-0.057 Sum_probs=36.5
Q ss_pred EEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCccc
Q 004888 144 SIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 218 (725)
Q Consensus 144 ~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~ 218 (725)
-++..+|++|+++. -+.+..+-.|-.+.+|..+.......|. .++..+.+|+.++ ++|..+.
T Consensus 3 Ly~~~~s~~~~~~~-------~~L~~~~l~~~~~~v~~~~~~~~~~~~~----~~~p~~~vP~l~~--~~~~~l~ 64 (74)
T cd03051 3 LYDSPTAPNPRRVR-------IFLAEKGIDVPLVTVDLAAGEQRSPEFL----AKNPAGTVPVLEL--DDGTVIT 64 (74)
T ss_pred EEeCCCCcchHHHH-------HHHHHcCCCceEEEeecccCccCCHHHH----hhCCCCCCCEEEe--CCCCEEe
Confidence 46778999999875 3344445467777777643211112232 2346678898864 4565554
No 287
>PLN02345 endoglucanase
Probab=63.36 E-value=2.4e+02 Score=32.87 Aligned_cols=118 Identities=11% Similarity=-0.018 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCC--CCCCcch-------------------HHHHHHHHHHHHHHcC
Q 004888 579 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK--APGFLDD-------------------YAFLISGLLDLYEFGS 637 (725)
Q Consensus 579 ~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~--~~~~leD-------------------yA~li~aLL~LYe~Tg 637 (725)
+++++.++=..+|+++.. + .+|.+++...++..+ .+..+|+ -+.++.+|...+.+-.
T Consensus 82 ~~~ldelkw~~Dyllk~~-~-~~~~~y~qVg~~~~Dh~~W~~Pe~~~~~R~~~~~~~~~pgsd~a~~~AAAlA~as~vfk 159 (469)
T PLN02345 82 DSAKDSLKWITDYLINAH-P-SENVLYIQVGDPKLDHKCWERPETMDEKRPLTKINTSSPGSEVAAETAAAMAAASLVFK 159 (469)
T ss_pred HHHHHHHhHHHHHHHHhc-C-CCCeEEEEecCCCCCcccCCChhhcCCcceEEecCCCCCCcHHHHHHHHHHHHHHHHhc
Confidence 789999999999998765 3 367888765443221 1122232 2345556666666655
Q ss_pred C--H----HHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCCh--HHHHHHHHHHHHHhhCCCCc
Q 004888 638 G--T----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSG--NSVSVINLVRLASIVAGSKS 709 (725)
Q Consensus 638 d--~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~--Nsv~a~~LlrL~~~t~~~~~ 709 (725)
+ + ++|+.|+++++++..+ .|.|...... ..+..+|. +--++-+-..|+..||+
T Consensus 160 ~~D~~YA~~lL~~Ak~ly~fa~~~-----~g~y~~~~~~-----------~~~~Y~s~~~~DEl~WAAawLy~ATgd--- 220 (469)
T PLN02345 160 SSDSTYSDTLLKHAKQLFNFADKY-----RGSYSESIPE-----------VQDYYNSTGYGDELLWAASWLYHATGD--- 220 (469)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhC-----CCcccCCCCc-----------cCCCCCCcccccHHHHHHHHHHHHhCC---
Confidence 3 3 5689999999888764 2222211100 00111111 01366666788999997
Q ss_pred hHHHHHHH
Q 004888 710 DYYRQNAE 717 (725)
Q Consensus 710 ~~y~~~A~ 717 (725)
..|.+.+.
T Consensus 221 ~~Yl~~~~ 228 (469)
T PLN02345 221 KTYLAYVT 228 (469)
T ss_pred HHHHHHHH
Confidence 68988874
No 288
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=61.92 E-value=1.1e+02 Score=32.63 Aligned_cols=122 Identities=15% Similarity=0.127 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHhhccccCCCCCCCCCC-CChhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCC
Q 004888 281 PQNALRLCAEQLSKSYDSRFGGFGSAPKF-PRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGG 359 (725)
Q Consensus 281 ~~~~~~~~~~~l~~~~D~~~GGfg~apKF-P~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~ma~gGi~D~v~G 359 (725)
+....+++++.+.+..+...|||+..|-- |........+.......+. ..+.....+ +...|.++ -+..|
T Consensus 45 ~~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~T~~al~~l~llg~~--~~~~~~~~~-~~~~l~~~------q~~dG 115 (286)
T cd02890 45 DDENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLASTYAAVLSLAILGDD--ALSRIDREK-IYKFLSSL------QNPDG 115 (286)
T ss_pred chHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHHHHHHHHHHHHcCcc--ccchhhHHH-HHHHHHHh------cCCCC
Confidence 44556778888887773446999987533 2221111111111111110 000112222 22333333 12468
Q ss_pred eEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceee
Q 004888 360 GFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 425 (725)
Q Consensus 360 GF~RYs~D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~Ggfys 425 (725)
||. ++. |...|.-=. ..-+.+..+.+... ....+++++||.+ .+.++|||-.
T Consensus 116 gf~-~~~---~~~~d~~~t--------y~al~~l~ll~~~~-~~~~~~~~~~l~~-~Q~~dGGf~~ 167 (286)
T cd02890 116 SFR-GDL---GGEVDTRFV--------YCALSILSLLNILT-DIDKEKLIDYILS-CQNYDGGFGG 167 (286)
T ss_pred Ccc-cCC---CCCchHHHH--------HHHHHHHHHhCCch-hhhHHHHHHHHHH-hCCCCCCcCC
Confidence 884 443 333332211 11222223334332 4567889999997 5788999843
No 289
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=61.90 E-value=2.3e+02 Score=30.38 Aligned_cols=69 Identities=19% Similarity=0.311 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcch--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCC
Q 004888 585 AESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDD--YAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGG 662 (725)
Q Consensus 585 A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~leD--yA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~G 662 (725)
..++.+||.+.... +|++. |.+ +...| |.|.+.|.+. .+ |...|.+ .+.+.+++...- +...|
T Consensus 198 ~~~~~~~L~~~q~~--~GGf~-----gr~---~k~~D~~ysf~~~a~l~--~l-~~~~~~~-~~~l~~~l~~~q-~~~~G 262 (287)
T cd02894 198 RDRLGWWLCERQLP--SGGLN-----GRP---EKLPDVCYSWWVLSSLK--II-GRLHWIN-KNKLKNFILACQ-DEEDG 262 (287)
T ss_pred HHHHHHHHHHhCCC--CCCcC-----CCC---CCCCchhHhhHHHHHHH--Hh-ccccccC-HHHHHHHHHHhc-CCCCC
Confidence 44577888766532 36662 222 11222 4555555443 33 4455665 788888887765 34557
Q ss_pred cccccC
Q 004888 663 GYFNTT 668 (725)
Q Consensus 663 gyf~t~ 668 (725)
||=..+
T Consensus 263 Gf~~~p 268 (287)
T cd02894 263 GFADRP 268 (287)
T ss_pred CcCCCC
Confidence 765443
No 290
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=61.28 E-value=27 Score=28.81 Aligned_cols=59 Identities=14% Similarity=0.103 Sum_probs=37.8
Q ss_pred EEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCccc
Q 004888 144 SIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 218 (725)
Q Consensus 144 ~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~ 218 (725)
-++..||++|++.. -+.+..+-.|-.+.||....+ ..|. ..+..+..|+.+ +.||..+.
T Consensus 3 ly~~~~~p~~~rv~-------~~L~~~gl~~e~~~v~~~~~~---~~~~----~~np~~~vP~L~--~~~g~~l~ 61 (71)
T cd03060 3 LYSFRRCPYAMRAR-------MALLLAGITVELREVELKNKP---AEML----AASPKGTVPVLV--LGNGTVIE 61 (71)
T ss_pred EEecCCCcHHHHHH-------HHHHHcCCCcEEEEeCCCCCC---HHHH----HHCCCCCCCEEE--ECCCcEEe
Confidence 35789999999874 344444556888888876433 2232 234677889885 34576654
No 291
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []. It is involved in sphingomyelin generation and prevention of glycolipid accumulation and may also catalyze the hydrolysis of bile acid 3-O-glucosides, however, the relevance of such activity is unclear in vivo []. ; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0016021 integral to membrane; PDB: 1V7V_A 1V7W_A 1V7X_A.
Probab=61.17 E-value=19 Score=40.31 Aligned_cols=104 Identities=14% Similarity=0.189 Sum_probs=48.8
Q ss_pred cHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecC--CCCCCC---CCc
Q 004888 545 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN--GPSKAP---GFL 619 (725)
Q Consensus 545 WNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~--g~~~~~---~~l 619 (725)
.|...|..+.+.++.+||.. | .++....++++.+++.. +|+++.++...... ..-+.. | .
T Consensus 100 ~~~~fVL~vyr~~~~TGD~~----f--------L~~~wp~v~~a~~~~~~--~D~d~dGl~e~~g~~D~TyD~~~~~G-~ 164 (365)
T PF04685_consen 100 LNPKFVLQVYRDYKWTGDRD----F--------LKEMWPAVKKAMDYLLS--WDRDGDGLPENPGHPDQTYDDWSMYG-P 164 (365)
T ss_dssp -----------------------------------EHHHHHHHHHHHHHH--SB--TTS-BEEET---SSSTT-EEEE-E
T ss_pred ccccccccccccccccccch----h--------hhhHHHHHHHHHHHHHh--hCCCCCCCCCCCCCCccccccCCeeC-C
Confidence 46888999999999999832 1 15567788999999987 56544445433211 111111 1 1
Q ss_pred chH-----HHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHccccCCCcccc
Q 004888 620 DDY-----AFLISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFN 666 (725)
Q Consensus 620 eDy-----A~li~aLL~LYe~Tgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~ 666 (725)
+-| ..++.++.++.++-|++ +|.+.+++..+.+.+.+|+ |.||.
T Consensus 165 say~~~L~laAL~A~~emA~~lgd~~~a~~y~~~~~~~~~~~~~~LWn---Geyy~ 217 (365)
T PF04685_consen 165 SAYCGGLWLAALRAAAEMAKILGDPELAAKYRELAEKAKKAFNKKLWN---GEYYR 217 (365)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHSEE---TTEE-
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhhC---Hhhee
Confidence 122 34666778888888985 5778888888889998997 56776
No 292
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=60.98 E-value=5.7 Score=38.58 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=20.4
Q ss_pred cCCcEEEEEeccCChhhHhhhhh
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVE 159 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e 159 (725)
++++.++.|+-..|+||+.|+..
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~ 36 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPI 36 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHH
Confidence 57888999999999999999953
No 293
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=60.62 E-value=1.1e+02 Score=32.05 Aligned_cols=61 Identities=11% Similarity=0.113 Sum_probs=44.8
Q ss_pred cccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCcee
Q 004888 354 HDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 424 (725)
Q Consensus 354 ~D~v~GGF~RYs~D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~Ggfy 424 (725)
|-+-+|||.- | -.+-+=-....|..+.+|++|.+...=+ .++..++++||... +.++|.|-
T Consensus 9 y~~~DGsfs~------f-~~~~~~s~WLTAfv~k~f~~a~~~i~vd--~~~i~~a~~wL~~~-Q~~dG~F~ 69 (246)
T PF07678_consen 9 YRRSDGSFSA------F-SSDSPSSTWLTAFVVKVFSQAKKYIFVD--ENVICRAVKWLISQ-QQPDGSFE 69 (246)
T ss_dssp TB-TTSSBBS------S-TTTSSBBHHHHHHHHHHHHHHTTTS-CE--HHHHHHHHHHHHHH-BETTSEB-
T ss_pred CCCCCCCeec------c-ccCCcccHHHHHHHHHHHHHHHHhhcCC--HHHHHHHHHHHHHh-hcCCCccc
Confidence 3456788864 3 3333667788999999999998884332 57789999999998 77888883
No 294
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=60.29 E-value=72 Score=36.00 Aligned_cols=104 Identities=15% Similarity=0.059 Sum_probs=66.8
Q ss_pred CCcchhhhcHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCC--eEEEEecCCCCC
Q 004888 537 LDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTH--RLQHSFRNGPSK 614 (725)
Q Consensus 537 lDdKiitsWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G--~l~~s~~~g~~~ 614 (725)
.|..-=|+---.+.+||++|++.-++ ++|++.|..+++.|.++...+..| .+..--..|-..
T Consensus 109 ~D~NsASDGDl~IA~ALl~A~~~W~~----------------~~Y~~~A~~ll~~I~~~ev~~~~g~g~~LlPG~~gF~~ 172 (376)
T PRK11097 109 LDANSASDADLWIAYSLLEAGRLWKE----------------PRYTALGTALLKRIAREEVVTVPGLGSMLLPGPVGFAD 172 (376)
T ss_pred CCCCCCChHHHHHHHHHHHHHHhhCc----------------HHHHHHHHHHHHHHHHhcccccCCCceeeccccccccC
Confidence 34443444446778899999999987 789999999999999887665444 222110111000
Q ss_pred CCC-CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 004888 615 APG-FLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELF 656 (725)
Q Consensus 615 ~~~-~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F 656 (725)
... .++.-=++...+-.+++++++..|.+.+....+.+.+.-
T Consensus 173 ~~~~~~NPSY~~p~~~~~fa~~~~~~~W~~l~~~~~~lL~~~a 215 (376)
T PRK11097 173 DGSWRLNPSYLPPQLLRRFARFLPGGPWAALAATNARLLLETA 215 (376)
T ss_pred CCCCeECcccccHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 011 122222345555666889999999999988888776643
No 295
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=60.28 E-value=6.3 Score=39.21 Aligned_cols=54 Identities=30% Similarity=0.481 Sum_probs=35.2
Q ss_pred hcCCcEEEEEeccCC-hhhHhhhhhccCCHHHHHHHhc-----CcEEEEEcCCC-CcchHHHHH
Q 004888 136 KRDVPIFLSIGYSTC-HWCHVMEVESFEDEGVAKLLND-----WFVSIKVDREE-RPDVDKVYM 192 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC-~~C~~Me~e~f~d~eVa~~ln~-----~FV~VkvD~ee-~pd~~~~y~ 192 (725)
=.||+++|+|++..| .-|-.+-... .++.+.+.+ ++|.|-||-+. .|+.-+.|.
T Consensus 50 ~~Gk~~lv~F~yT~CpdvCp~~l~~l---~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y~ 110 (174)
T PF02630_consen 50 LKGKWVLVFFGYTRCPDVCPTTLANL---SQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKYA 110 (174)
T ss_dssp GTTSEEEEEEE-TTSSSHHHHHHHHH---HHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHHH
T ss_pred hCCCeEEEEEEEcCCCccCHHHHHHH---HHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHHH
Confidence 479999999999999 5688664322 234444432 48888888763 577666664
No 296
>PLN00119 endoglucanase
Probab=59.03 E-value=3.2e+02 Score=32.09 Aligned_cols=116 Identities=11% Similarity=0.087 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCC--CCCCcc------------------hH-HHHHHHHHHHHHHcC
Q 004888 579 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK--APGFLD------------------DY-AFLISGLLDLYEFGS 637 (725)
Q Consensus 579 ~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~--~~~~le------------------Dy-A~li~aLL~LYe~Tg 637 (725)
+..++.++=..+|+++..- ..+.+++...+|..+ .++.++ |- +.++.+|...+.+-.
T Consensus 117 ~~~lde~kw~~Dyllk~~~--~~~~~y~qVgdg~~DH~~W~~Pe~~~~~R~~y~i~~~~pgSd~a~~~AAAlA~as~vfk 194 (489)
T PLN00119 117 GNALAALKWATDYLIKAHP--QPNVLYGQVGDGNSDHACWMRPEDMTTPRTSYRIDAQHPGSDLAGETAAAMAAASIAFA 194 (489)
T ss_pred HHHHHHHHHHHHHHHHhcC--CCCeEEEEeccCCCcccccCChhhCCCcCceeecCCCCCchHHHHHHHHHHHHHHHHcc
Confidence 6789999999999987653 356777664443211 111111 22 345555556666655
Q ss_pred --CHH----HHHHHHHHHHHHHHH--cc-cc--CCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHhhCC
Q 004888 638 --GTK----WLVWAIELQNTQDEL--FL-DR--EGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 706 (725)
Q Consensus 638 --d~~----yL~~A~~L~~~~~~~--F~-D~--~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~t~~ 706 (725)
|+. .|+.|+++++++..+ .+ +. ..++||.... .. --++-+-..|+..||+
T Consensus 195 ~~D~~yA~~lL~~Ak~~y~fA~~~~g~y~~~~~~~~g~Y~ss~-----------~~--------DEl~WAAawLY~aTgd 255 (489)
T PLN00119 195 PSDPAYASILIGHAKDLFEFAKAHPGLYQNSIPNAGGFYASSG-----------YE--------DELLWAAAWLHRATND 255 (489)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCCCCCCc-----------hh--------hHHHHHHHHHHHHhCC
Confidence 444 588888888888763 00 00 0112222110 01 1356666788999997
Q ss_pred CCchHHHHHHHH
Q 004888 707 SKSDYYRQNAEH 718 (725)
Q Consensus 707 ~~~~~y~~~A~~ 718 (725)
..|.+.+..
T Consensus 256 ---~~Yl~~~~~ 264 (489)
T PLN00119 256 ---QTYLDYLTQ 264 (489)
T ss_pred ---HHHHHHHHh
Confidence 688887654
No 297
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=57.99 E-value=37 Score=28.39 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=38.6
Q ss_pred EeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCcccc
Q 004888 145 IGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 145 ~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~~ 219 (725)
+++.+|+||++.. -+.+..+=.|-.+.|+..+.+ ..+ ..+.+.+-.|+.+ ++|..++.
T Consensus 2 y~~~~Sp~~~kv~-------~~l~~~~i~~~~~~v~~~~~~---~~~----~~~~p~~~vPvL~---~~g~~l~d 59 (75)
T PF13417_consen 2 YGFPGSPYSQKVR-------LALEEKGIPYELVPVDPEEKR---PEF----LKLNPKGKVPVLV---DDGEVLTD 59 (75)
T ss_dssp EEETTSHHHHHHH-------HHHHHHTEEEEEEEEBTTSTS---HHH----HHHSTTSBSSEEE---ETTEEEES
T ss_pred CCcCCChHHHHHH-------HHHHHcCCeEEEeccCcccch---hHH----HhhcccccceEEE---ECCEEEeC
Confidence 5789999999985 445555556888888876542 223 2234677889886 44776654
No 298
>PLN03012 Camelliol C synthase
Probab=57.40 E-value=4.6e+02 Score=32.50 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhcc
Q 004888 379 LYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMI 417 (725)
Q Consensus 379 LyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~ 417 (725)
+-|-|+++.++.++.. .+++....+++.+||.+.=.
T Consensus 418 vWDTa~~~qAl~~agl---~~~~~~~l~kA~~~L~~~Qv 453 (759)
T PLN03012 418 LWDSGFALQALLASNL---SNEIPDVLRRGHDFIKNSQV 453 (759)
T ss_pred HHHHHHHHHHHHHcCC---CccchHHHHHHHHHHHHHhc
Confidence 4589999999988752 23678899999999998433
No 299
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=57.04 E-value=12 Score=34.32 Aligned_cols=59 Identities=22% Similarity=0.390 Sum_probs=35.1
Q ss_pred EEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCc
Q 004888 144 SIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (725)
Q Consensus 144 ~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~ 216 (725)
-++.++|++|++.. ++|++ +.-+..+|+.+.|.-.......++ ..|.|..-+++..|+.
T Consensus 3 iY~~~~C~~c~ka~----------~~L~~~~i~~~~idi~~~~~~~~el~~~~~----~~~~~~~~l~~~~~~~ 62 (111)
T cd03036 3 FYEYPKCSTCRKAK----------KWLDEHGVDYTAIDIVEEPPSKEELKKWLE----KSGLPLKKFFNTSGKS 62 (111)
T ss_pred EEECCCCHHHHHHH----------HHHHHcCCceEEecccCCcccHHHHHHHHH----HcCCCHHHHHhcCCch
Confidence 47889999999865 34544 344555666555543333333333 3366777777776653
No 300
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=56.28 E-value=26 Score=31.20 Aligned_cols=28 Identities=18% Similarity=0.069 Sum_probs=19.7
Q ss_pred cCChHHHHHHHHHHHHHHHhccCCCCcee
Q 004888 396 TKDVFYSYICRDILDYLRRDMIGPGGEIF 424 (725)
Q Consensus 396 t~d~~y~~vA~~~~~fl~~~m~~~~Ggfy 424 (725)
.+.+...+.++++++||++ ++.++|||-
T Consensus 85 ~~~~~~~~~~~~a~~~l~~-~Q~~dGg~~ 112 (113)
T PF13249_consen 85 LGRPDDEEAVRKAVDWLLS-CQNPDGGWG 112 (113)
T ss_dssp HT-GGCHTTHCCHHHHHHH-TB-TTSSB-
T ss_pred cCCCcccHHHHHHHHHHHH-hcCCCCCCC
Confidence 3433337788999999998 778899983
No 301
>PLN02171 endoglucanase
Probab=55.55 E-value=4.5e+02 Score=31.88 Aligned_cols=120 Identities=11% Similarity=0.067 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCC--CCCCcc------------------h-HHHHHHHHHHHHHHcC
Q 004888 579 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK--APGFLD------------------D-YAFLISGLLDLYEFGS 637 (725)
Q Consensus 579 ~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~--~~~~le------------------D-yA~li~aLL~LYe~Tg 637 (725)
+..|+.++=..+|+++.. ++.+.+++...+|..+ .+..+| | -+.++.+|...+.+-.
T Consensus 116 ~~~Ldeikw~~Dyllk~~--~~~~~~y~qVgdg~~DH~~W~~Pe~~~~~R~~y~i~~~~pgSd~a~e~AAAlAaaS~vfk 193 (629)
T PLN02171 116 GHAMDAVKWGTDYFIKAH--PEPNVLYGEVGDGDTDHYCWQRPEDMTTDRQAYRIDPQNPGSDLAGETAAAMAAASIVFR 193 (629)
T ss_pred HHHHHHHHHHHHHHHHhc--cCCCeEEEEeCCCCccccCcCChhHccccceeEEecCCCCchHHHHHHHHHHHHHHHhcc
Confidence 678999999999998775 3457788765443221 111122 1 2345556666666554
Q ss_pred --CH----HHHHHHHHHHHHHHHH--cccc---CCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHhhCC
Q 004888 638 --GT----KWLVWAIELQNTQDEL--FLDR---EGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 706 (725)
Q Consensus 638 --d~----~yL~~A~~L~~~~~~~--F~D~---~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~t~~ 706 (725)
|+ +.|+.|+++++++..+ .++. ...+||.... .-+--++-+-..|+..||+
T Consensus 194 ~~D~~YA~~lL~~Ak~ly~fA~~~~g~y~~~~~~~~~~Y~s~s------------------~y~DEl~WAAawLy~ATgd 255 (629)
T PLN02171 194 RSNPGYANELLTHAKQLFDFADKYRGKYDSSITVAQKYYRSVS------------------GYGDELLWAAAWLYQATNN 255 (629)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhCCCcccCCCcccCCccCCCC------------------CccHHHHHHHHHHHHHhCC
Confidence 44 4588899998888663 1110 0112222100 0012466666788999997
Q ss_pred CCchHHHHHHHHHHH
Q 004888 707 SKSDYYRQNAEHSLY 721 (725)
Q Consensus 707 ~~~~~y~~~A~~~l~ 721 (725)
..|.+.+.....
T Consensus 256 ---~~Yl~~~~~~~~ 267 (629)
T PLN02171 256 ---QYYLDYLGNNGD 267 (629)
T ss_pred ---HHHHHHHHHHHH
Confidence 689988776543
No 302
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=54.66 E-value=6.9 Score=41.49 Aligned_cols=60 Identities=18% Similarity=0.251 Sum_probs=41.3
Q ss_pred hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc--CcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCC
Q 004888 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~--~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pd 213 (725)
..|||.++.+|+.||+.|-..- =.+...|.+ +| .++-+.....+. -...|+.+|..-.
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~s------W~L~~ALsrfGn~-~l~~~~S~~~d~-------------~pn~Ptl~F~~~~ 115 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAES------WALYIALSRFGNF-SLEYHYSDPYDN-------------YPNTPTLIFNNYT 115 (249)
T ss_pred CCCeeEEEEEecccCccchhhH------HHHHHHHHhcCCe-eeEEeecCcccC-------------CCCCCeEEEecCc
Confidence 5699999999999999997632 134555654 45 666665543221 2478999998875
Q ss_pred CC
Q 004888 214 LK 215 (725)
Q Consensus 214 G~ 215 (725)
..
T Consensus 116 ~~ 117 (249)
T PF06053_consen 116 PN 117 (249)
T ss_pred CC
Confidence 43
No 303
>PRK13271 treA trehalase; Provisional
Probab=54.51 E-value=2.7e+02 Score=33.34 Aligned_cols=130 Identities=19% Similarity=0.227 Sum_probs=79.0
Q ss_pred hhhhcHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCCCCC
Q 004888 541 VIVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPSKAP 616 (725)
Q Consensus 541 iitsWNal~I~---aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~-~~g~~~~~ 616 (725)
|-+.-|++++. .|++.++.+|+.. +..+|.+.|.+..+.|.+.|||++.|.++.-. .+++
T Consensus 337 iPVDLNALLy~ae~~LA~la~~lGd~~------------~A~~y~~~A~~rr~AI~~~LWnee~G~f~DYDl~~~~---- 400 (569)
T PRK13271 337 VPVDLNALMFKMEKILARASKAAGDNA------------MANQYETLANARQKAIEKYLWNDKEGWYADYDLKSHK---- 400 (569)
T ss_pred cCchHHHHHHHHHHHHHHHHHHhCChh------------hHHHHHHHHHHHHHHHHHhcccCCCCEEEEEECCCCC----
Confidence 44567999976 4777778888732 12479999999999999999998777665432 2222
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCC--CChHHHHH
Q 004888 617 GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAE--PSGNSVSV 694 (725)
Q Consensus 617 ~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~--PS~Nsv~a 694 (725)
.-+ .+.+.+++-||-=.-+ .+.|.++.+.+..+|..+ ||.-.+..+ ....=|++. |-.+-+++
T Consensus 401 --~r~-~~saa~f~PLwag~a~---~~qA~~Vv~~l~~~Ll~p--gGLpTt~~~-------SgqQWD~PngWaPlq~iii 465 (569)
T PRK13271 401 --VRN-QLTAAALFPLYVNAAA---KDRANKVAAATKTHLLQP--GGLNTTSVK-------SGQQWDAPNGWAPLQWVAT 465 (569)
T ss_pred --Eee-chhHHHHHhhhcCCCC---HHHHHHHHHHHHHhcCCC--CCccCCCCC-------CCCCCcCcccCHhHHHHHH
Confidence 112 3566677777632223 256777887777777663 555443321 111123322 34555677
Q ss_pred HHHHHHH
Q 004888 695 INLVRLA 701 (725)
Q Consensus 695 ~~LlrL~ 701 (725)
..|.+.+
T Consensus 466 eGL~~yG 472 (569)
T PRK13271 466 EGLQNYG 472 (569)
T ss_pred HHHHHcC
Confidence 7776654
No 304
>PRK13270 treF trehalase; Provisional
Probab=54.45 E-value=3.2e+02 Score=32.50 Aligned_cols=129 Identities=16% Similarity=0.197 Sum_probs=79.5
Q ss_pred hhhhcHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCCCC
Q 004888 541 VIVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSKAP 616 (725)
Q Consensus 541 iitsWNal~I~---aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s-~~~g~~~~~ 616 (725)
+.+.-|++++. .|++.++.+|+.. +..+|.+.|.+..+.|.+.|||++.|.++.- .+.++
T Consensus 347 ipVDLNaiL~~~e~~LA~~a~~lG~~~------------~a~~~~~~A~~r~~AI~~~LWnee~G~~~DYD~~~~~---- 410 (549)
T PRK13270 347 IPIDLNAFLYKLESAIANISALKGEKE------------TEALFRQKASARRDAVNRYLWDDENGIYRDYDWRREQ---- 410 (549)
T ss_pred chhhHHHHHHHHHHHHHHHHHHhCChH------------HHHHHHHHHHHHHHHHHHhccCcccCeEEecccccCc----
Confidence 34467888866 5778888888732 1257899999999999999999888766543 12222
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCC--CCChHHHHH
Q 004888 617 GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGA--EPSGNSVSV 694 (725)
Q Consensus 617 ~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a--~PS~Nsv~a 694 (725)
. + .+.+.+++=|+-=.-++ +.|..+.+.+..+|.. .||...+.. .....=|++ =|-.+-+++
T Consensus 411 --~-~-~~s~a~f~PLwaG~a~~---~qa~~l~~~l~~~ll~--pGGl~tS~~-------~sgqQWD~PN~WaPlqwmii 474 (549)
T PRK13270 411 --L-A-LFSAAAIVPLYVGMANH---EQADRLANAVRSRLLT--PGGILASEY-------ETGEQWDKPNGWAPLQWMAI 474 (549)
T ss_pred --c-c-cccHHHHHHHHhCCCCH---HHHHHHHHHHHHhccc--CCCcCCCCC-------CCcccCCCCCCCccHHHHHH
Confidence 1 1 25677888887533343 4577777777666654 344433221 111122433 345566777
Q ss_pred HHHHHHH
Q 004888 695 INLVRLA 701 (725)
Q Consensus 695 ~~LlrL~ 701 (725)
..|.+.+
T Consensus 475 eGL~ryG 481 (549)
T PRK13270 475 QGFKMYG 481 (549)
T ss_pred HHHHHcC
Confidence 7777654
No 305
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=53.97 E-value=23 Score=29.60 Aligned_cols=61 Identities=16% Similarity=0.214 Sum_probs=35.8
Q ss_pred EEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecC-CCCcccc
Q 004888 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP-DLKPLMG 219 (725)
Q Consensus 143 l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~p-dG~~i~~ 219 (725)
.-+++..|++|++.. .+....+=.|..+.+|....+++ ...+.+..|+.++-+. +|++++.
T Consensus 3 ~Ly~~~~~p~c~kv~-------~~L~~~gi~y~~~~~~~~~~~~~---------~~~~~~~vP~l~~~~~~~~~~l~e 64 (77)
T cd03040 3 TLYQYKTCPFCCKVR-------AFLDYHGIPYEVVEVNPVSRKEI---------KWSSYKKVPILRVESGGDGQQLVD 64 (77)
T ss_pred EEEEcCCCHHHHHHH-------HHHHHCCCceEEEECCchhHHHH---------HHhCCCccCEEEECCCCCccEEEc
Confidence 457789999999986 33444444566665554322221 1246778998875422 4666654
No 306
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=53.77 E-value=49 Score=36.43 Aligned_cols=116 Identities=14% Similarity=0.090 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCC-cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q 004888 579 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGF-LDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL 657 (725)
Q Consensus 579 ~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~-leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~ 657 (725)
+..++.-+...+|+.++-+. +|-+.-+- +++.+.--. -.+--=++..|...|++.++++||+.|.+..+.++++=.
T Consensus 241 ~~~~~dVK~sldym~~~rfp--sGNyP~s~-~~~~drLVhWcHGApGv~~~L~kAy~VF~Eekyl~aa~ecadvVW~rGl 317 (403)
T KOG2787|consen 241 PALLKDVKGSLDYMIQNRFP--SGNYPSSE-GNKRDRLVHWCHGAPGVAYTLAKAYQVFKEEKYLEAAMECADVVWKRGL 317 (403)
T ss_pred hhHHHhhhhHHHHHHHccCC--CCCCCccc-CCCcceeeeeccCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhh
Confidence 45677778888888776543 44443321 111111000 000012567889999999999999999999999887632
Q ss_pred ccCCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 004888 658 DREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLYL 722 (725)
Q Consensus 658 D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~t~~~~~~~y~~~A~~~l~~ 722 (725)
=+.+-| .-+| -+||+- .++-|+++|++ ..|.-+|.+.-..
T Consensus 318 Lkkg~G-----------------ichG--vaGNaY---vFLsLyRLT~d---~kYlyRA~kFae~ 357 (403)
T KOG2787|consen 318 LKKGVG-----------------ICHG--VAGNAY---VFLSLYRLTGD---MKYLYRAKKFAEW 357 (403)
T ss_pred hhcCCc-----------------cccc--ccCchh---hhHhHHHHcCc---HHHHHHHHHHHHH
Confidence 222101 1111 366654 46677888997 7899998876543
No 307
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []. It is involved in sphingomyelin generation and prevention of glycolipid accumulation and may also catalyze the hydrolysis of bile acid 3-O-glucosides, however, the relevance of such activity is unclear in vivo []. ; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0016021 integral to membrane; PDB: 1V7V_A 1V7W_A 1V7X_A.
Probab=53.44 E-value=57 Score=36.55 Aligned_cols=39 Identities=13% Similarity=0.062 Sum_probs=9.8
Q ss_pred chhHHHHHHHHHHHHHHHHccCChHHHH----HHHHHHHHHHH
Q 004888 376 EKMLYDQGQLANVYLDAFSLTKDVFYSY----ICRDILDYLRR 414 (725)
Q Consensus 376 EKMLyDNA~Ll~~ya~Ay~~t~d~~y~~----vA~~~~~fl~~ 414 (725)
..+.-.|...+..-.+.|+.|||..+++ .++++++|+++
T Consensus 95 ~~~~D~~~~fVL~vyr~~~~TGD~~fL~~~wp~v~~a~~~~~~ 137 (365)
T PF04685_consen 95 YAWKDLNPKFVLQVYRDYKWTGDRDFLKEMWPAVKKAMDYLLS 137 (365)
T ss_dssp ----------------------------EHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccchhhhhHHHHHHHHHHHHHh
Confidence 3444448777777788999999988764 67999999998
No 308
>PLN02909 Endoglucanase
Probab=51.53 E-value=4.6e+02 Score=30.74 Aligned_cols=117 Identities=9% Similarity=-0.032 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC--CCCCCcch-------------------HHHHHHHHHHHHHHc
Q 004888 578 RKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDD-------------------YAFLISGLLDLYEFG 636 (725)
Q Consensus 578 ~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~--~~~~~leD-------------------yA~li~aLL~LYe~T 636 (725)
.+..++.++=..+|+++... .+|.+++...++.. ..++.+|+ -+.++.+|...+.+.
T Consensus 119 ~~d~ldeikw~~D~llk~~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~~~R~~~~i~~~~pgtd~a~~~AAAlA~as~vf 196 (486)
T PLN02909 119 LENVRAAIRWGTDYFLKAAS--RKNRLYVQVGDPNLDHQCWVRPENMKTPRTVLEIDEKTPGTEIAAETAAAMAASSMVF 196 (486)
T ss_pred hHHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCCCcccCCChhhccCCceeEecCCCCCCcHHHHHHHHHHHHHHHhh
Confidence 37899999999999987653 35788887544321 11111221 244555666666665
Q ss_pred C--CH----HHHHHHHHHHHHHHHHc--cccCCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHhhCCCC
Q 004888 637 S--GT----KWLVWAIELQNTQDELF--LDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSK 708 (725)
Q Consensus 637 g--d~----~yL~~A~~L~~~~~~~F--~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~t~~~~ 708 (725)
. |+ ++|+.|++++++...+= ++. ..+||....+ . +--++-+-..|+..||+
T Consensus 197 k~~D~~yA~~lL~~Ak~~y~fA~~~~g~y~~-~~~~y~s~s~----------y--------~DEl~WAAawLy~aTgd-- 255 (486)
T PLN02909 197 RHVDHKYSRRLLNKAKLLFKFAKAHKGTYDG-ECPFYCSYSG----------Y--------NDELLWAATWLYKATKK-- 255 (486)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhCCCCcCC-CCCccccCCC----------c--------chHHHHHHHHHHHHhCC--
Confidence 4 44 45889999998887641 000 0112221100 0 12455556678889987
Q ss_pred chHHHHHHHH
Q 004888 709 SDYYRQNAEH 718 (725)
Q Consensus 709 ~~~y~~~A~~ 718 (725)
..|.+.+..
T Consensus 256 -~~Yl~~~~~ 264 (486)
T PLN02909 256 -QMYLKYIKH 264 (486)
T ss_pred -HHHHHHHHh
Confidence 678876654
No 309
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=51.51 E-value=14 Score=33.30 Aligned_cols=61 Identities=11% Similarity=0.098 Sum_probs=33.6
Q ss_pred EEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCcc
Q 004888 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (725)
Q Consensus 143 l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i 217 (725)
..++.++|.+|++.. ++|++ +.-...+|+.+.|.-.....+..+. .|.+..-++++.|.+.
T Consensus 2 ~iY~~~~C~~c~ka~----------~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~----~~~~~~~li~~~~~~~ 63 (105)
T cd02977 2 TIYGNPNCSTSRKAL----------AWLEEHGIEYEFIDYLKEPPTKEELKELLAK----LGLGVEDLFNTRGTPY 63 (105)
T ss_pred EEEECCCCHHHHHHH----------HHHHHcCCCcEEEeeccCCCCHHHHHHHHHh----cCCCHHHHHhcCCchH
Confidence 357899999999864 33333 2223344554444433344343332 3455566667776654
No 310
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=51.41 E-value=47 Score=25.79 Aligned_cols=59 Identities=14% Similarity=-0.081 Sum_probs=36.2
Q ss_pred EEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCccc
Q 004888 144 SIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 218 (725)
Q Consensus 144 ~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~ 218 (725)
-++.++|++|++.. .+.+..+-.|-.+.++..+.+.. .+ ....+.+..|+.++ + |+.+.
T Consensus 3 ly~~~~~~~~~~~~-------~~l~~~~i~~~~~~~~~~~~~~~--~~----~~~~~~~~~P~l~~-~--~~~~~ 61 (71)
T cd00570 3 LYYFPGSPRSLRVR-------LALEEKGLPYELVPVDLGEGEQE--EF----LALNPLGKVPVLED-G--GLVLT 61 (71)
T ss_pred EEeCCCCccHHHHH-------HHHHHcCCCcEEEEeCCCCCCCH--HH----HhcCCCCCCCEEEE-C--CEEEE
Confidence 46778899999875 34455555677777776544332 22 22346778896653 2 55553
No 311
>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 37 GH37 from CAZY comprises enzymes with only one known activity; trehalase (3.2.1.28 from EC). Trehalase is the enzyme responsible for the degradation of the disaccharide alpha,alpha-trehalose yielding two glucose subunits []. It is an enzyme found in a wide variety of organisms and whose sequence has been highly conserved throughout evolution.; GO: 0004555 alpha,alpha-trehalase activity, 0005991 trehalose metabolic process; PDB: 2JJB_B 2WYN_B 2JG0_A 2JF4_A 3C67_A 3D3I_B 3C69_A 3C68_A 2Z07_B.
Probab=51.39 E-value=1.6e+02 Score=34.48 Aligned_cols=96 Identities=21% Similarity=0.244 Sum_probs=57.1
Q ss_pred cchhhhcHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCCC
Q 004888 539 DKVIVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPSK 614 (725)
Q Consensus 539 dKiitsWNal~I~---aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~-~~g~~~ 614 (725)
+-|-+.-|+++.. .|++.++.+|+... ...|.+.|.+..+.|.+.|||++.|.++.-. ..+...
T Consensus 303 ~iipVDLNa~L~~~e~~LA~~a~~lG~~~~------------a~~~~~~A~~~~~aI~~~lWdee~g~~~Dyd~~~~~~~ 370 (512)
T PF01204_consen 303 DIIPVDLNAILYRNEKDLAEFAELLGDQEK------------AEEYRQRAEERKEAINQYLWDEEDGFYYDYDLRTGKRS 370 (512)
T ss_dssp CEE-HHHHHHHHHHHHHHHHHHHHTT-HHH------------HHHHHHHHHHHHHHHHHHTEETTTTEE--EETTTTEEG
T ss_pred eecCchHHHHHHHHHHHHHHHHHHcCchhH------------HHHHHHHHHHHHHHHHHhCccCCCCeEEeeeCCCCCCc
Confidence 4455578999866 68889999996321 2679999999999999999999888776432 223221
Q ss_pred CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 004888 615 APGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELF 656 (725)
Q Consensus 615 ~~~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F 656 (725)
. .+.+.+++=|+--.-++ +.|..+...+...+
T Consensus 371 ~-------~~~~a~f~PL~ag~a~~---~qa~~~~~~~l~~~ 402 (512)
T PF01204_consen 371 P-------VFSPANFLPLWAGIASP---EQAERLVARALDYL 402 (512)
T ss_dssp G---------BGGGGHHHHTT-S-H---HHHHHHHHHHHHHC
T ss_pred c-------cccHHHHHHHHHhhcCH---hhhhhHHHHHHHHH
Confidence 1 23344555554333333 23555555555554
No 312
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]
Probab=50.59 E-value=1.3e+02 Score=36.27 Aligned_cols=119 Identities=15% Similarity=0.194 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhc---cccCCCeEEEE-----ecCCCCC-----
Q 004888 548 LVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHL---YDEQTHRLQHS-----FRNGPSK----- 614 (725)
Q Consensus 548 l~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l---~d~~~G~l~~s-----~~~g~~~----- 614 (725)
+.|-++.+.+.-++|.. | ..+....+..+.+++.+.+ ++..+.++.+. +.|+...
T Consensus 343 ~~i~~~~~y~~~t~d~~----~--------i~e~~~~v~~a~d~~~~~~~~~~~~~~~~l~~~~~~~tW~Ds~~~~~~~~ 410 (641)
T COG3408 343 LFIYLLGAYLKYTGDTE----F--------IRELWPSVGAALDWILKGFDFGFDTYGDGLLEGGSNQTWMDSGDDIFAVT 410 (641)
T ss_pred HHHHHHHHHHHHhccHH----H--------HHHHHHHHHHHHHHHHhcCCccceecCcccccCCCCCCCeecCCcccccc
Confidence 44445555555566522 1 2677788888888887766 23333344442 1121110
Q ss_pred -----CCCCcchHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccc
Q 004888 615 -----APGFLDDYAFLISGLLDLYEFGS----GTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKE 680 (725)
Q Consensus 615 -----~~~~leDyA~li~aLL~LYe~Tg----d~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~ 680 (725)
.....+=+.+++.++..+.+..+ -++|.+.|+++.+.+...||.+ .+||+...+++.+.+|+..
T Consensus 411 ~~~g~pi~i~al~~~~~~a~~~~a~ll~~~~~~~~~~~~a~~l~~~F~~~fw~~--~~f~dl~~~~~~~~~r~~~ 483 (641)
T COG3408 411 PRAGKPVAINALQYYALKAALRLANLLGDEEDAARLEKIARRLKESFEAKFWNP--TGFYDLALDDKDVPIRPNF 483 (641)
T ss_pred CCCCCceeHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhCc--cchHhhhccCCCcccCccc
Confidence 01122233447888888888888 5678899999999999999986 5688877666555555543
No 313
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=49.76 E-value=2.9e+02 Score=27.97 Aligned_cols=140 Identities=8% Similarity=0.053 Sum_probs=91.1
Q ss_pred ChhhhcccCC-CCc---cccchHHHHHHHhhcCCcEEEEEecc--CChhhHhhhhhcc---CCHHHHHHHhcCcEEEEEc
Q 004888 110 SPYLLQHAHN-PVD---WFAWGEEAFAEARKRDVPIFLSIGYS--TCHWCHVMEVESF---EDEGVAKLLNDWFVSIKVD 180 (725)
Q Consensus 110 spyl~~ha~~-~V~---W~~~~~eAl~~Ak~e~KpI~l~~g~~--wC~~C~~Me~e~f---~d~eVa~~ln~~FV~VkvD 180 (725)
.+++....+. |+. |+...++-+..|++-|---+|.+++- -|+-=+ ..+| +++++.+.++...+.+++.
T Consensus 15 ~~illl~g~e~~~~p~~~~e~a~~vld~a~~~gv~~iitLgG~~~~~~~tr---p~V~~~at~~el~~~l~~~g~~~~~~ 91 (188)
T TIGR00162 15 TDLIILVGNTQSLSPEGQYELVNAIIDVAKKYGARMIYTLGGYGVGKLVEE---PYVYGAATSPELVEELKEHGVKFREP 91 (188)
T ss_pred CCEEEEEcCCCCCChhhHHHHHHHHHHHHHHcCCCEEEEecCCcCCCCCCC---CceEEEeCCHHHHHHHHhcCCeeecC
Confidence 4777777777 666 99999999999999999888888772 222211 1133 5789999998766665544
Q ss_pred CCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCccccccccCCCCCCCcchHHHHHHHHHHHHh--hchHHHHHhHHH
Q 004888 181 REERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWD--KKRDMLAQSGAF 258 (725)
Q Consensus 181 ~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i~~~~~--~~~~~l~~~a~~ 258 (725)
..----+.......+ ...|.|...++-.- .+|+|- ...=..+|+.+.+... =+.+.|++.|++
T Consensus 92 ~g~i~G~~glLl~~a----~~~gi~ai~L~~e~------p~y~pD-----P~AA~alL~~L~kllgl~vd~~~L~e~Ae~ 156 (188)
T TIGR00162 92 GGGIIGASGLLLGVS----ELEGIPGACLMGET------PGYMID-----PKAAKAVLEVLCKMLSLEVSVEALEERAKE 156 (188)
T ss_pred CCccccHHHHHHHHH----HHCCCCeEEEEEeC------CCCCCC-----hHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 322112333333333 34589998887542 234442 2355677777777764 478899999988
Q ss_pred HHHHHHHHh
Q 004888 259 AIEQLSEAL 267 (725)
Q Consensus 259 ~~~~l~~~~ 267 (725)
+.+.+++..
T Consensus 157 ie~~~~~~~ 165 (188)
T TIGR00162 157 MEKIIAKIK 165 (188)
T ss_pred HHHHHHHHH
Confidence 888777654
No 314
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=49.62 E-value=23 Score=33.58 Aligned_cols=44 Identities=9% Similarity=-0.056 Sum_probs=29.1
Q ss_pred hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcC
Q 004888 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDR 181 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ 181 (725)
...+++++.|+...|++|+.|+.... +-+.+++++ .+..+.++.
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~--~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEELE--KLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHHHH--HHHHHHTTTTTEEEEEEES
T ss_pred CCCCeEEEEEECCCCHhHHHHHHHHh--hhhhhccCCCceEEEEEEc
Confidence 45677888999999999999987665 455554433 444444444
No 315
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=49.28 E-value=30 Score=33.81 Aligned_cols=30 Identities=13% Similarity=0.143 Sum_probs=17.4
Q ss_pred CChhhHhhhhhccCCHHHHHHHhcC-cEEEEEcCCCCcchH
Q 004888 149 TCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVD 188 (725)
Q Consensus 149 wC~~C~~Me~e~f~d~eVa~~ln~~-FV~VkvD~ee~pd~~ 188 (725)
+|++|+.+. ++|+.+ .-...+|++..++..
T Consensus 15 t~~~C~~ak----------~iL~~~~V~~~e~DVs~~~~~~ 45 (147)
T cd03031 15 TFEDCNNVR----------AILESFRVKFDERDVSMDSGFR 45 (147)
T ss_pred cChhHHHHH----------HHHHHCCCcEEEEECCCCHHHH
Confidence 899998875 334432 222346776555443
No 316
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=48.87 E-value=23 Score=36.10 Aligned_cols=43 Identities=21% Similarity=0.191 Sum_probs=31.6
Q ss_pred CCcEEEEEeccCChhhHhhhhhcc-CCHHHHHHHhcCcEEEEEcC
Q 004888 138 DVPIFLSIGYSTCHWCHVMEVESF-EDEGVAKLLNDWFVSIKVDR 181 (725)
Q Consensus 138 ~KpI~l~~g~~wC~~C~~Me~e~f-~d~eVa~~ln~~FV~VkvD~ 181 (725)
+||-+|.|..-.|++|..++. ++ ..+.+.+.+.++-..+++.+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~-~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEE-VYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcc-cccchHHHHHhCCCCCeEEEecc
Confidence 578899999999999999987 44 44677777766544444443
No 317
>PLN02175 endoglucanase
Probab=48.71 E-value=2.1e+02 Score=33.47 Aligned_cols=113 Identities=17% Similarity=0.225 Sum_probs=61.5
Q ss_pred cCCCC---CCCCCCCChhHHH-HHHHhhhh-ccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCeEEEEecC-----C
Q 004888 299 RFGGF---GSAPKFPRPVEIQ-MMLYHSKK-LEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVD-----E 368 (725)
Q Consensus 299 ~~GGf---g~apKFP~~~~l~-~ll~~~~~-~~~~~~~~~~~~~~~~~~~TL~~ma~gGi~D~v~GGF~RYs~D-----~ 368 (725)
.-||| |.--||=.|.... .+|-+... .++ ....+-+++++.+.--+|=|.+ .++...|+||.-..| .
T Consensus 68 lsGGwyDAGD~vKf~~p~A~t~t~LaW~~~e~~~-~~~~~~~~~l~~lkw~~Dyllk--~~~~~~g~vy~qVG~~~~Dh~ 144 (484)
T PLN02175 68 LTGGYYDAGDNVKFNFPMAFTTTMLSWSALEYGK-RMGPELENARVNIRWATDYLLK--CARATPGKLYVGVGDPNVDHK 144 (484)
T ss_pred CCCCeeeCCCCCeeCchHHHHHHHHHhhhhhccc-ccchHHHHHHHHHHHHHHHHHh--CcCCCCCeEEEEeCCCCCCcc
Confidence 35888 6667886664332 23333221 111 1111223455555554444544 333334566643322 2
Q ss_pred CCCCCCCchh---HH---------H-HHHHHHHHHHHHHccCC--hH----HHHHHHHHHHHHHH
Q 004888 369 RWHVPHFEKM---LY---------D-QGQLANVYLDAFSLTKD--VF----YSYICRDILDYLRR 414 (725)
Q Consensus 369 ~W~vPHFEKM---Ly---------D-NA~Ll~~ya~Ay~~t~d--~~----y~~vA~~~~~fl~~ 414 (725)
.|..|+-.++ +| | -|..+.+++.|++++++ +. ++..|++..+|..+
T Consensus 145 ~W~~PE~~~~~R~~~~is~~~PGSd~aae~AAALAaaS~vfk~~D~~YA~~lL~~Ak~ly~fA~~ 209 (484)
T PLN02175 145 CWERPEDMDTPRTVYSVSPSNPGSDVAAETAAALAAASMVFRKVDSKYSRLLLATAKKVMQFAIQ 209 (484)
T ss_pred cCCChhHccCccceEecCCCCCccHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHh
Confidence 5666632211 11 3 56788899999999874 44 57889999999887
No 318
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=47.32 E-value=1.3e+02 Score=34.13 Aligned_cols=57 Identities=16% Similarity=0.019 Sum_probs=39.5
Q ss_pred ccccCCCeEEEE--ecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004888 596 LYDEQTHRLQHS--FRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQ 652 (725)
Q Consensus 596 l~d~~~G~l~~s--~~~g~~~~~~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~ 652 (725)
++|..+|.+|.. ..=|.+..-+.|+=+|.-+.-|.-|..+..|+-.-+.|++.-.++
T Consensus 528 LyDTGSGTiYDLRH~~LG~APNLARWDYHatHvnqL~llatId~dpv~~~ta~RWkgY~ 586 (594)
T KOG3760|consen 528 LYDTGSGTIYDLRHVALGTAPNLARWDYHATHVNQLKLLATIDKDPVLSKTADRWKGYA 586 (594)
T ss_pred eeecCCCceeehhhhhhccCcccccchhhhHHHHHHHHHhhccccHHHHHHHHHHHhhh
Confidence 578777777643 122555445656666777888888888889998888888765554
No 319
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=46.33 E-value=70 Score=34.16 Aligned_cols=77 Identities=9% Similarity=0.076 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHh
Q 004888 336 EGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRD 415 (725)
Q Consensus 336 ~~~~~~~~TL~~ma~gGi~D~v~GGF~RYs~D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~ 415 (725)
++.+++..-..++.. +-+-+|||-- |....-+--.+..|..+.++.+|.... +....+.+++++||.+
T Consensus 46 ~~~~~l~~g~~~~~~---~q~~dGsf~~------w~~~~~~~~~wlTa~v~~~L~~a~~~~--~v~~~~i~ra~~wL~~- 113 (292)
T cd02897 46 KALGFLRTGYQRQLT---YKHSDGSYSA------FGESDKSGSTWLTAFVLKSFAQARPFI--YIDENVLQQALTWLSS- 113 (292)
T ss_pred HHHHHHHHHHHHHHh---ccCCCCCeec------ccCCCCCcchhhHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHH-
Confidence 344444444444433 4456799843 311112345677999999999987432 2345788999999996
Q ss_pred ccCCCCcee
Q 004888 416 MIGPGGEIF 424 (725)
Q Consensus 416 m~~~~Ggfy 424 (725)
++.++|||.
T Consensus 114 ~Q~~dG~f~ 122 (292)
T cd02897 114 HQKSNGCFR 122 (292)
T ss_pred hcCCCCCCC
Confidence 578899995
No 320
>PF01270 Glyco_hydro_8: Glycosyl hydrolases family 8; InterPro: IPR002037 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 8 GH8 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); lichenase (3.2.1.73 from EC); chitosanase (3.2.1.132 from EC). These enzymes were formerly known as cellulase family D []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1IS9_A 1CEM_A 1KWF_A 1V5D_B 1V5C_A 1WU4_A 2DRS_A 1WU6_A 2DRO_A 1WU5_A ....
Probab=45.44 E-value=1.7e+02 Score=32.43 Aligned_cols=127 Identities=13% Similarity=0.054 Sum_probs=77.4
Q ss_pred HHHHHHHHHhccccCCCeEEEEecCCCCC-C---CCCcchHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcccc
Q 004888 586 ESAASFIRRHLYDEQTHRLQHSFRNGPSK-A---PGFLDDYAFLISGLLDLYEFGS--GTKWLVWAIELQNTQDELFLDR 659 (725)
Q Consensus 586 ~~~a~~l~~~l~d~~~G~l~~s~~~g~~~-~---~~~leDyA~li~aLL~LYe~Tg--d~~yL~~A~~L~~~~~~~F~D~ 659 (725)
.++.+|.++++..+++|.+-+.+..+... . ..=.|+=-+.+.|||...+..| ...|+..|..+...+..+-+.
T Consensus 75 d~l~~wt~~~l~~~~~~L~aW~~~~~~~~~~~~~nsAtDgDl~iA~ALl~A~~~Wg~~~~~y~~~A~~~~~~i~~~~v~- 153 (342)
T PF01270_consen 75 DRLWNWTKANLSRRNDGLMAWRWGPDGNSQVGDPNSATDGDLDIAYALLLAARRWGDGAYNYLAEALAIINAIKTHEVN- 153 (342)
T ss_dssp HHHHHHHHHHCBTTTTSSBESEEETTSTSSCEECSEBHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHHHHEE-
T ss_pred HHHHHHHHHHhccCCCCCeeEEECCCCCCCCCCCCCCChHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHhheeC-
Confidence 45778888898755566665555433221 1 1234445688999999999999 558999999999998777665
Q ss_pred CCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 004888 660 EGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLYLR 723 (725)
Q Consensus 660 ~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~t~~~~~~~y~~~A~~~l~~~ 723 (725)
.|.+.-.++...- ..+..-...||=- +.-.+.+++..+++ ..|.+.++..++.+
T Consensus 154 -~g~~~llpG~~~f----~~~~~~~~npSY~--~~pa~~~f~~~~~~---~~W~~v~~~~~~ll 207 (342)
T PF01270_consen 154 -PGRYVLLPGDWGF----NSDDYWTTNPSYF--MPPAFRAFAAATGD---PRWNEVADSSYALL 207 (342)
T ss_dssp -TTEEEECSSSSSC----BTTSEEEEEGGGS---HHHHHHHHHHHCC---THHHHHHHHHHHHH
T ss_pred -CCceEEecccccc----CCCCceEeChhhc--cHHHHHHHHHhcCC---hhHHHHHHHHHHHH
Confidence 3433322221100 0000000123333 33445688889886 68999988877655
No 321
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=45.39 E-value=4.3e+02 Score=28.62 Aligned_cols=72 Identities=19% Similarity=0.241 Sum_probs=43.6
Q ss_pred HHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCccc
Q 004888 586 ESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYF 665 (725)
Q Consensus 586 ~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf 665 (725)
+.++-||.+.... +|+| +|.| --+.|-++--+.|..|- +-|...|.+.. +|.+++... -|.++|||=
T Consensus 213 d~lgwwlceRQ~~--sGGL-----NGRp---eKlpDVCYSwWvlsSL~-iigrl~wId~e-kL~~FIl~c-Qd~~~GGfs 279 (329)
T KOG0366|consen 213 DLLGWWLCERQLP--SGGL-----NGRP---EKLPDVCYSWWVLSSLA-IIGRLHWIDRE-KLTKFILAC-QDEETGGFS 279 (329)
T ss_pred HHHHHHHHhccCC--CCCC-----CCCc---ccCcchhhHHHHHhHHH-HhhhhhhccHH-HHHHHHHhc-CCCCCCCcC
Confidence 4466677666544 5666 3443 33455555555555553 34677888764 566666553 477889988
Q ss_pred ccCCC
Q 004888 666 NTTGE 670 (725)
Q Consensus 666 ~t~~~ 670 (725)
+.+++
T Consensus 280 DRpgd 284 (329)
T KOG0366|consen 280 DRPGD 284 (329)
T ss_pred CCCCC
Confidence 76654
No 322
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=44.24 E-value=25 Score=33.40 Aligned_cols=60 Identities=10% Similarity=0.033 Sum_probs=32.3
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcC-cEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCC
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~-FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~ 215 (725)
+..++.++|++|++.. ++|+++ .-...+|+.+.|.-.......++.+ |.+.--++++.|+
T Consensus 2 i~iY~~~~C~~C~ka~----------~~L~~~gi~~~~idi~~~~~~~~eL~~~l~~~----~~g~~~lin~~~~ 62 (131)
T PRK01655 2 VTLFTSPSCTSCRKAK----------AWLEEHDIPFTERNIFSSPLTIDEIKQILRMT----EDGTDEIISTRSK 62 (131)
T ss_pred EEEEeCCCChHHHHHH----------HHHHHcCCCcEEeeccCChhhHHHHHHHHHHh----cCCHHHHHhcCcH
Confidence 3457899999999854 556553 3334456655554333443444332 2333344555544
No 323
>PRK12559 transcriptional regulator Spx; Provisional
Probab=41.49 E-value=26 Score=33.45 Aligned_cols=61 Identities=8% Similarity=0.058 Sum_probs=33.7
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEE-EEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCc
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVS-IKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~-VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~ 216 (725)
+..++.++|..|++.. ++|+++=|. ..+|..+.|.-.......++.. |.|..-+++..|+.
T Consensus 2 i~iY~~~~C~~crkA~----------~~L~~~gi~~~~~di~~~~~s~~el~~~l~~~----~~g~~~lin~~~~~ 63 (131)
T PRK12559 2 VVLYTTASCASCRKAK----------AWLEENQIDYTEKNIVSNSMTVDELKSILRLT----EEGATEIISTRSKT 63 (131)
T ss_pred EEEEeCCCChHHHHHH----------HHHHHcCCCeEEEEeeCCcCCHHHHHHHHHHc----CCCHHHHHhcCcHH
Confidence 4467899999999854 556654333 3356655444333444444332 34444455665543
No 324
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=39.99 E-value=4.5e+02 Score=29.57 Aligned_cols=124 Identities=17% Similarity=0.140 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhccccCCCCCCCC-CCCC-hhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCC
Q 004888 276 LPDELPQNALRLCAEQLSKSYDSRFGGFGSAP-KFPR-PVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGI 353 (725)
Q Consensus 276 ~~~~~~~~~~~~~~~~l~~~~D~~~GGfg~ap-KFP~-~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~ma~gGi 353 (725)
+...++.++.++++..|..---|+ ||||+.| ..|+ ++........-....+ +...-+=..+|-.-.. -
T Consensus 113 L~~~~dd~v~~~~i~fL~~c~~Pe-GGfgGGPGQl~HLA~TYAAVnaL~~~~~e-------~A~~~InR~~l~~fL~--s 182 (423)
T KOG0365|consen 113 LDEWLDDDVKENAIDFLFTCQGPE-GGFGGGPGQLPHLAPTYAAVNALCLCGSE-------DAYSSINREKLYQFLF--S 182 (423)
T ss_pred hcCcCCHHHHHHHHHHHHhcCCCC-CCCCCCCccchhhhHHHHHHHHHHhcCcH-------HHHHHhhHHHHHHHHH--H
Q ss_pred cccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCce
Q 004888 354 HDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEI 423 (725)
Q Consensus 354 ~D~v~GGF~RYs~D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~Ggf 423 (725)
.-+-+|||.- .++.+ .-.+-+.+=+-...+++=+.= +.-+.+++||.+ .+.=+|||
T Consensus 183 lK~~dGgFrm-h~~GE-----------~DvRs~YcA~svasllni~~d-eL~eG~~~wi~~-CQtyEGG~ 238 (423)
T KOG0365|consen 183 LKDPDGGFRM-HVEGE-----------VDVRSAYCALSVASLLNIPMD-ELFEGTLDWIAS-CQTYEGGF 238 (423)
T ss_pred hcCCCCCeEe-ecCCc-----------chHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHh-cccccCCc
No 325
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=39.85 E-value=47 Score=25.71 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=24.8
Q ss_pred chHHHHhcCCCHHHHHHHHHHHHHHHH
Q 004888 500 SSASASKLGMPLEKYLNILGECRRKLF 526 (725)
Q Consensus 500 ~~~~a~~~g~~~e~~~~~l~~~r~kL~ 526 (725)
.+++|+.+|++...+..+...+.++|.
T Consensus 23 ~~eIa~~lg~s~~~V~~~~~~al~kLR 49 (50)
T PF04545_consen 23 LEEIAERLGISRSTVRRILKRALKKLR 49 (50)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCcHHHHHHHHHHHHHHhc
Confidence 468999999999999999999999986
No 326
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=39.03 E-value=82 Score=29.86 Aligned_cols=43 Identities=14% Similarity=0.126 Sum_probs=32.8
Q ss_pred HHHHHHhcC-cEEEEEcCCCCcchHHHHHHHHHHhcCC--CCcCcEEEecCCCC
Q 004888 165 GVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGG--GGWPLSVFLSPDLK 215 (725)
Q Consensus 165 eVa~~ln~~-FV~VkvD~ee~pd~~~~y~~~~q~~~g~--~G~P~~vfl~pdG~ 215 (725)
+|++.+... +..|-+|.++.+.+.+.+ |. .++|+.++++.++.
T Consensus 48 ~vAk~~kgk~i~Fv~vd~~~~~~~~~~f--------gl~~~~~P~v~i~~~~~~ 93 (130)
T cd02983 48 SVAEKFKKKPWGWLWTEAGAQLDLEEAL--------NIGGFGYPAMVAINFRKM 93 (130)
T ss_pred HHHHHhcCCcEEEEEEeCcccHHHHHHc--------CCCccCCCEEEEEecccC
Confidence 788888777 889999998866544333 54 47999999999764
No 327
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=38.72 E-value=62 Score=34.16 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=17.1
Q ss_pred hhcCCcEEEEEeccCChhhH
Q 004888 135 RKRDVPIFLSIGYSTCHWCH 154 (725)
Q Consensus 135 k~e~KpI~l~~g~~wC~~C~ 154 (725)
.+.++|++|+||+-+|+.=.
T Consensus 99 ~~g~RPLVlnFGS~TCPpF~ 118 (237)
T PF00837_consen 99 AKGNRPLVLNFGSCTCPPFM 118 (237)
T ss_pred ccCCCCeEEEcccccchHHH
Confidence 35699999999999999754
No 328
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=38.19 E-value=58 Score=28.45 Aligned_cols=64 Identities=28% Similarity=0.372 Sum_probs=37.3
Q ss_pred CcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEc------------CCCCcchHHHHHHHHHHhcCCCCcCc
Q 004888 139 VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVD------------REERPDVDKVYMTYVQALYGGGGWPL 206 (725)
Q Consensus 139 KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD------------~ee~pd~~~~y~~~~q~~~g~~G~P~ 206 (725)
|| +-||+..|+-|-..-+ --+.+|=+|-.|.+- |+.+|+.++.- ..|.-|.|.
T Consensus 3 kp--~lfgsn~Cpdca~a~e-------yl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk------~~gyiGIPa 67 (85)
T COG4545 3 KP--KLFGSNLCPDCAPAVE-------YLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVK------SNGYIGIPA 67 (85)
T ss_pred Cc--eeeccccCcchHHHHH-------HHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhh------hcCcccceE
Confidence 67 5689999999986542 123344344444432 22334333221 136678897
Q ss_pred EEEecCCCCcccc
Q 004888 207 SVFLSPDLKPLMG 219 (725)
Q Consensus 207 ~vfl~pdG~~i~~ 219 (725)
. +++||+.+.+
T Consensus 68 l--l~~d~~vVl~ 78 (85)
T COG4545 68 L--LTDDGKVVLG 78 (85)
T ss_pred E--EeCCCcEEEe
Confidence 5 5788888765
No 329
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=36.65 E-value=55 Score=30.19 Aligned_cols=59 Identities=14% Similarity=0.148 Sum_probs=33.3
Q ss_pred EEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCc
Q 004888 144 SIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (725)
Q Consensus 144 ~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~ 216 (725)
-++.++|+.|++.. ++|++ +.-...+|..+.|.-...+.+.++.+ |-..--+++..|+.
T Consensus 3 iY~~~~C~~c~ka~----------~~L~~~~i~~~~idi~~~~~~~~el~~l~~~~----~~~~~~lin~~~~~ 62 (117)
T TIGR01617 3 VYGSPNCTTCKKAR----------RWLEANGIEYQFIDIGEDGPTREELLDILSLL----EDGIDPLLNTRGQS 62 (117)
T ss_pred EEeCCCCHHHHHHH----------HHHHHcCCceEEEecCCChhhHHHHHHHHHHc----CCCHHHheeCCCcc
Confidence 46899999999865 33443 34444566666555444444444433 33333345666554
No 330
>PF05426 Alginate_lyase: Alginate lyase; InterPro: IPR008397 Alginate is a family of 1-4-linked copolymers of beta-D-mannuronic acid (M) and alpha-L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyse the depolymerisation of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end []. Two subfamilies of alginate lyase exist: the poly(beta-D-mannuronate) lyase, 4.2.2.3 from EC, and the poly(alpha-L-guluronate) lyase, 4.2.2.11 from EC. This entry represents a domain found in the former.; GO: 0045135 poly(beta-D-mannuronate) lyase activity, 0042122 alginic acid catabolic process, 0042597 periplasmic space; PDB: 4E1Y_A 4E25_A 4E23_B 1QAZ_A 1HV6_A 3NFV_A 3NNB_A.
Probab=36.19 E-value=5.2e+02 Score=26.94 Aligned_cols=35 Identities=26% Similarity=0.211 Sum_probs=26.2
Q ss_pred chhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 004888 376 EKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILD 410 (725)
Q Consensus 376 EKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~ 410 (725)
-+-+..-|..+...+.+|.+|||+.|.+.|.++++
T Consensus 52 ~~~~~~~a~a~~~lAlay~~Tgd~~YA~~a~~iL~ 86 (272)
T PF05426_consen 52 YSRLQRDADAAYALALAYYLTGDEKYADKAAEILN 86 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455577788999999999999999988877765
No 331
>PLN02993 lupeol synthase
Probab=35.64 E-value=2e+02 Score=35.55 Aligned_cols=131 Identities=14% Similarity=0.131 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccC-CCeEEEEecCCCCC---------CC
Q 004888 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQ-THRLQHSFRNGPSK---------AP 616 (725)
Q Consensus 547 al~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~-~G~l~~s~~~g~~~---------~~ 616 (725)
++++.||.+++.. +++-....++.+||++.-.... .|-+...+++..+. ..
T Consensus 422 a~a~qAl~~agl~-------------------~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gy 482 (763)
T PLN02993 422 GFAIQALLASDLS-------------------DETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGW 482 (763)
T ss_pred HHHHHHHHHcCCC-------------------cccCHHHHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCC
Confidence 7889999988621 1355678889999977665311 12222223332221 23
Q ss_pred CCcchHHHHHHHHHHHHHHcC----C---HHHHHHHHHHHHHHHHHccccCCCcc--cccCCCCCcccccccc-------
Q 004888 617 GFLDDYAFLISGLLDLYEFGS----G---TKWLVWAIELQNTQDELFLDREGGGY--FNTTGEDPSVLLRVKE------- 680 (725)
Q Consensus 617 ~~leDyA~li~aLL~LYe~Tg----d---~~yL~~A~~L~~~~~~~F~D~~~Ggy--f~t~~~~~~~~~r~k~------- 680 (725)
.-.||-|.++.+++.|..... + .+-+..|.+..-.+. ++ +||| |+.... .. .+...+
T Consensus 483 p~sDdTAe~lka~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQ----n~-dGG~aafe~~~~-~~-~le~ln~ae~f~~ 555 (763)
T PLN02993 483 QVSDCTAEALKCCMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQ----SE-NGGVTAWEPVRA-YK-WLELLNPTDFFAN 555 (763)
T ss_pred CcCCchHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHhhc----cC-CCCEEeeeCCCc-hh-HHHcCCHHHhhcC
Confidence 556788999998777776542 2 234444444443332 23 4665 443221 11 111111
Q ss_pred -CCCCCCCChHHHHHHHHHHHHHh
Q 004888 681 -DHDGAEPSGNSVSVINLVRLASI 703 (725)
Q Consensus 681 -~~D~a~PS~Nsv~a~~LlrL~~~ 703 (725)
.-|-.++..++.+...|..+...
T Consensus 556 ~miD~~~~dcT~~vl~aL~~~~~~ 579 (763)
T PLN02993 556 TMVEREYVECTSAVIQALVLFKQL 579 (763)
T ss_pred cccCCCCcCHHHHHHHHHHHhccc
Confidence 12456677777777777666543
No 332
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=35.58 E-value=3.2e+02 Score=29.45 Aligned_cols=116 Identities=18% Similarity=0.196 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCChhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCeEE
Q 004888 283 NALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFH 362 (725)
Q Consensus 283 ~~~~~~~~~l~~~~D~~~GGfg~apKFP~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~ma~gGi~D~v~GGF~ 362 (725)
..+.+++.-|.+..++ .+.|..+.++.+.....+. ....-+..-|..|+. .|. +.|+.
T Consensus 170 ~~i~rA~~yL~~~~~~----------~~~~Y~~Al~ayALal~~~--------~~~~~a~~~L~~~~~---~d~-~~~~~ 227 (297)
T cd02896 170 QSIRKAISYLENQLPN----------LQRPYALAITAYALALADS--------PLSHAANRKLLSLAK---RDG-NGWYW 227 (297)
T ss_pred HHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcCC--------hhhHHHHHHHHHHhh---hCC-Cccee
Confidence 3566777777776554 2344444454444433211 123334555666653 232 12222
Q ss_pred EEecCCCCCCCCCc-hhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeecc
Q 004888 363 RYSVDERWHVPHFE-KMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAED 428 (725)
Q Consensus 363 RYs~D~~W~vPHFE-KMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~Ggfysa~D 428 (725)
--+.+..|..+... .-+---|..|-+++.. ++ .+.|..++.||.+. +...|||.|++|
T Consensus 228 ~~~~~~~~~~~~~~~~~vE~TAYALLall~~----~~---~~~a~~iv~WL~~q-r~~~Ggf~sTQd 286 (297)
T cd02896 228 WTIDSPYWPVPGPSAITVETTAYALLALLKL----GD---IEYANPIARWLTEQ-RNYGGGFGSTQD 286 (297)
T ss_pred ccCcCccCCCCCCchhhhHHHHHHHHHHHhc----CC---chhHHHHHHHHHhc-CCCCCCeehHHH
Confidence 12344555443221 1222244455555543 33 23688999999985 466799999876
No 333
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=34.69 E-value=2.9e+02 Score=31.44 Aligned_cols=142 Identities=23% Similarity=0.307 Sum_probs=74.2
Q ss_pred cHHHH-----HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecC------CCC
Q 004888 545 WNGLV-----ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN------GPS 613 (725)
Q Consensus 545 WNal~-----I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~------g~~ 613 (725)
|.+-| |+-|++|+..++| +.||..|.++..--+ +.. ++|+....+-+ .-+
T Consensus 418 W~SAMaQGhaISvL~RAy~h~~D----------------e~yL~sAa~al~pyk--~~S-~dgGV~a~Fm~K~~WYEEYP 478 (594)
T KOG3760|consen 418 WHSAMAQGHAISVLTRAYKHFND----------------EKYLKSAAKALKPYK--INS-SDGGVRAEFMGKNIWYEEYP 478 (594)
T ss_pred hHhhhhcccchHHHHHHHHhcCc----------------HHHHHHHHhhcCCeE--eec-CCCceEEEEccccchhhhcC
Confidence 66555 8999999999998 789988877763221 222 24554433322 222
Q ss_pred CCC--CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HHHHccccCCCcccccC----CCCCcccccccc
Q 004888 614 KAP--GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNT-------QDELFLDREGGGYFNTT----GEDPSVLLRVKE 680 (725)
Q Consensus 614 ~~~--~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~-------~~~~F~D~~~Ggyf~t~----~~~~~~~~r~k~ 680 (725)
..+ =.++++.+-+.||.+|=+-. ..+--+.|.+|... +.. +||..+|.-|+-- +-+|.+ .|+ +
T Consensus 479 TTP~SfVLNGF~YSLiGLYDL~eTa-~~Kia~EA~~Ly~~Gm~SLK~mLp-LyDTGSGTiYDLRH~~LG~APNL-ARW-D 554 (594)
T KOG3760|consen 479 TTPGSFVLNGFLYSLIGLYDLDETA-RAKIAQEAQELYSAGMRSLKQMLP-LYDTGSGTIYDLRHVALGTAPNL-ARW-D 554 (594)
T ss_pred CCCcceeehhHHHHhhhhhccchhh-hHHHHHHHHHHHHHHHHHHHhhhe-eeecCCCceeehhhhhhccCccc-ccc-h
Confidence 222 23455544455555542221 22222445555432 222 5687777766632 112221 232 1
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhhCCCCchHHHHHHHHHH
Q 004888 681 DHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSL 720 (725)
Q Consensus 681 ~~D~a~PS~Nsv~a~~LlrL~~~t~~~~~~~y~~~A~~~l 720 (725)
++ +.-+..|.-|+.+-.+ +-..+.|++-.
T Consensus 555 -------YH-atHvnqL~llatId~d---pv~~~ta~RWk 583 (594)
T KOG3760|consen 555 -------YH-ATHVNQLKLLATIDKD---PVLSKTADRWK 583 (594)
T ss_pred -------hh-hHHHHHHHHHhhcccc---HHHHHHHHHHH
Confidence 12 4556666777777543 67777776543
No 334
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=33.53 E-value=72 Score=34.20 Aligned_cols=65 Identities=17% Similarity=0.217 Sum_probs=39.6
Q ss_pred CcEEEEEeccCChhhHhhhhhccCCHHHH-HHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCcc
Q 004888 139 VPIFLSIGYSTCHWCHVMEVESFEDEGVA-KLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (725)
Q Consensus 139 KpI~l~~g~~wC~~C~~Me~e~f~d~eVa-~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i 217 (725)
..|+|.||-+.|.-|..|+. .+. .+| ++..-.||-|....- |.+ ..| ...+.|+.+++- +|..+
T Consensus 147 ~~VVVHiY~~~~~~C~~mn~-~L~--~LA~kyp~vKFvkI~a~~~--~~~-~~f--------~~~~LPtllvYk-~G~l~ 211 (265)
T PF02114_consen 147 TWVVVHIYEPGFPRCEIMNS-CLE--CLARKYPEVKFVKIRASKC--PAS-ENF--------PDKNLPTLLVYK-NGDLI 211 (265)
T ss_dssp -EEEEEEE-TTSCCHHHHHH-HHH--HHHHH-TTSEEEEEEECGC--CTT-TTS---------TTC-SEEEEEE-TTEEE
T ss_pred cEEEEEEEeCCCchHHHHHH-HHH--HHHHhCCceEEEEEehhcc--Ccc-cCC--------cccCCCEEEEEE-CCEEE
Confidence 36999999999999999984 332 333 333335666665432 322 122 456899999986 78776
Q ss_pred c
Q 004888 218 M 218 (725)
Q Consensus 218 ~ 218 (725)
.
T Consensus 212 ~ 212 (265)
T PF02114_consen 212 G 212 (265)
T ss_dssp E
T ss_pred E
Confidence 4
No 335
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=33.25 E-value=2e+02 Score=31.30 Aligned_cols=99 Identities=14% Similarity=0.180 Sum_probs=59.4
Q ss_pred chHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEE---cCCCC--cchHHHHHHHHHHhcC
Q 004888 126 WGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKV---DREER--PDVDKVYMTYVQALYG 200 (725)
Q Consensus 126 ~~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~Vkv---D~ee~--pd~~~~y~~~~q~~~g 200 (725)
...+++++|.+.+.|.||++... |+...++. ..++.+++-+.+.- |...+ +++..++.++......
T Consensus 164 eL~~ai~~Al~~~GpslIeV~~p-C~t~n~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 234 (287)
T TIGR02177 164 HLKEIIKEAINHKGYALVDILQP-CVTYNKIN--------TYEWYRERVYKLDEEGYDPIVREPEEFEEKAAAAIKKAME 234 (287)
T ss_pred HHHHHHHHHHhCCCCEEEEEeCC-CCCCCccc--------HHHHHHHhceeccccccCccccchhhhhhhHHHHHHHHHh
Confidence 35889999999999999999853 55543322 26778888888853 22222 2233344333332212
Q ss_pred -CCCcCcEEEecCCCCccccccccCCCCCCCcchHHHHHHHHHHHHhhch
Q 004888 201 -GGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDKKR 249 (725)
Q Consensus 201 -~~G~P~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i~~~~~~~~ 249 (725)
.+.+|+=||+..+.+ |.|-+.+.++.+.|.+.+
T Consensus 235 ~~~~~~~g~~~~~~~~----------------~~~~~~~~~~~~~~~~~~ 268 (287)
T TIGR02177 235 WGDRIPIGIFYKNENK----------------ETFEERLEKILPRYMSAP 268 (287)
T ss_pred hcCCceEEEEEECCCC----------------CCHHHHHHHHHHhcccCC
Confidence 356777777654322 347777777776665443
No 336
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=32.73 E-value=62 Score=27.21 Aligned_cols=63 Identities=10% Similarity=0.034 Sum_probs=33.9
Q ss_pred EEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCcccc
Q 004888 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 143 l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~~ 219 (725)
.-++.++|++|++-. .+.+.++-.|-.+.|+.. ......+ ...++.+..|+.+ .+.+|..++.
T Consensus 3 ~Ly~~~~sp~~~kv~-------~~L~~~gi~y~~~~v~~~--~~~~~~~----~~~~p~~~vP~l~-~~~~~~~l~e 65 (77)
T cd03041 3 ELYEFEGSPFCRLVR-------EVLTELELDVILYPCPKG--SPKRDKF----LEKGGKVQVPYLV-DPNTGVQMFE 65 (77)
T ss_pred eEecCCCCchHHHHH-------HHHHHcCCcEEEEECCCC--hHHHHHH----HHhCCCCcccEEE-eCCCCeEEEc
Confidence 345678999999754 333444435666555422 1111122 2345678899864 2334555543
No 337
>PF03200 Glyco_hydro_63: Mannosyl oligosaccharide glucosidase; InterPro: IPR004888 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of eukaryotic enzymes belonging to glycosyl hydrolase family 63 (GH63 from CAZY). They catalyse the specific cleavage of the non-reducing terminal glucose residue from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide glucosidase 3.2.1.106 from EC is the first enzyme in the N-linked oligosaccharide processing pathway. ; GO: 0004573 mannosyl-oligosaccharide glucosidase activity, 0009311 oligosaccharide metabolic process
Probab=32.57 E-value=68 Score=39.75 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=44.7
Q ss_pred hhhcHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE
Q 004888 542 IVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS 607 (725)
Q Consensus 542 itsWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s 607 (725)
+++|-+++...|++.+..++.++. ..+|.+.+..+.+.|.+.+||+++|.++..
T Consensus 560 l~sWMa~~a~~M~~IA~~L~~~d~------------~~ef~~~~~~i~~~l~~~hWdeedgfYyD~ 613 (801)
T PF03200_consen 560 LTSWMAFFALNMARIALELGKEDD------------AYEFFEHFEYISDALNKLHWDEEDGFYYDV 613 (801)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccc------------HHHHHHHHHHHHHHHHHhcCCcccCceeee
Confidence 579999999999999999986421 145779999999999999999998876654
No 338
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=32.37 E-value=1.8e+02 Score=28.79 Aligned_cols=50 Identities=16% Similarity=0.166 Sum_probs=30.1
Q ss_pred HHHHhhcCCcEEEEEe-ccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCC
Q 004888 131 FAEARKRDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE 182 (725)
Q Consensus 131 l~~Ak~e~KpI~l~~g-~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~e 182 (725)
+..+.-.||+|+|+|| .++++-|-. |.-.|+|. ..++=+.+-+.|=|-.+
T Consensus 23 v~Lsd~~Gk~VVLyFYPk~~TpgCT~-Ea~~Frd~-~~ef~~~~a~V~GIS~D 73 (157)
T COG1225 23 VSLSDLRGKPVVLYFYPKDFTPGCTT-EACDFRDL-LEEFEKLGAVVLGISPD 73 (157)
T ss_pred EehHHhcCCcEEEEECCCCCCCcchH-HHHHHHHH-HHHHHhCCCEEEEEeCC
Confidence 4455667889999986 589999987 44556532 11222224555555444
No 339
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=30.88 E-value=1.1e+03 Score=28.88 Aligned_cols=159 Identities=10% Similarity=0.029 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhhchHHHHHhHHHHHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHhhccc-cCCCCCCCCCCCCh
Q 004888 234 FKTILRKVKDAWDKKRDMLAQSGAFAIEQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYDS-RFGGFGSAPKFPRP 312 (725)
Q Consensus 234 F~~~L~~i~~~~~~~~~~l~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~-~~GGfg~apKFP~~ 312 (725)
.-+....+...-+..-+.+.+.-..-.+...+... ..+.. -.+++...+-.|....|. .-|++=.+|-+|.|
T Consensus 209 ~~~a~~~~~~~l~~g~~~~~~~~~~~W~~w~~~~~------~~~~~-~~~~~~rS~lvLK~~~d~~~~GAiIAA~Tts~p 281 (648)
T TIGR01535 209 AYEAAKTAVATLKEGYRRVKDAYIDEWEKYLNSLN------NFNGK-GNSLYYVSMMILKAHEDKTNPGAYIASLSIPWG 281 (648)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc------cCCch-HHHHHHHHHHHHHHhcCCCCCCcEEEecCCCCC
Confidence 44455555555555666665544333332222110 11221 245566666778888888 45999889988865
Q ss_pred hHH----------------HHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCe-EEEEecCCCCCCCCC
Q 004888 313 VEI----------------QMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGG-FHRYSVDERWHVPHF 375 (725)
Q Consensus 313 ~~l----------------~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~ma~gGi~D~v~GG-F~RYs~D~~W~vPHF 375 (725)
... .+....... .|..+++.+..+.+..+.. . .|+ .+.|.+|..-..+
T Consensus 282 e~~g~~~n~dYryvW~RD~a~~a~AL~~---~G~~~~a~~~~~~l~~~~~---------~-~G~~lq~y~vdG~~~~~-- 346 (648)
T TIGR01535 282 DGQADDNTGGYHLVWPRDLYQVANAFLA---AGDVDSALRSLDYLAKVQQ---------D-NGMFPQNSWVDGKPYWT-- 346 (648)
T ss_pred ccCCCCCCCceEEEehhhHHHHHHHHHH---CCCHHHHHHHHHHHHHHhc---------c-CCCcCceeccCCCCCCC--
Confidence 321 111111111 1222233344444444432 1 344 5669988765444
Q ss_pred chhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHh
Q 004888 376 EKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRD 415 (725)
Q Consensus 376 EKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~ 415 (725)
|.=|---|.+|++....++. +...|...++.+++||.+.
T Consensus 347 ~iQlD~~g~~i~~~~~l~~~-~~~~~~~~vk~aadfl~~~ 385 (648)
T TIGR01535 347 GIQLDETAFPILLAYRLHRY-DHAFYDKMLKPAADFIVKN 385 (648)
T ss_pred CccccHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHc
Confidence 33343467777766555554 3367888999999999984
No 340
>PLN03009 cellulase
Probab=30.63 E-value=9.4e+02 Score=28.25 Aligned_cols=146 Identities=12% Similarity=0.033 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC--CCCCCcc----
Q 004888 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS--KAPGFLD---- 620 (725)
Q Consensus 547 al~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~--~~~~~le---- 620 (725)
+..+..|+.++..++|. + |. ...++.|+.++=..+|+++...+ .|+++|...++.. ..++.++
T Consensus 90 a~s~~~L~w~~~~f~d~-----~--~~--~~~~diLdeikw~~D~llkm~~~--~~~~y~qVg~~~~Dh~~W~~Pe~~~~ 158 (495)
T PLN03009 90 AFTTTMLAWSVIEFGDL-----M--PS--SELRNSLVAIRWATDYLLKTVSQ--PNRIFVQVGDPIADHNCWERPEDMDT 158 (495)
T ss_pred HHHHHHHHHHHHHhHhh-----C--Cc--cccHHHHHHHHHHHHHHHHcccC--cCeEEEEeCCCCCCcccCcChhhcCC
Confidence 55555666666666551 1 21 12478999999999999876533 5788887544321 1011111
Q ss_pred --------------h-HHHHHHHHHHHHHHcC--CHHH----HHHHHHHHHHHHHHccccCCCcccccCCCCCccccccc
Q 004888 621 --------------D-YAFLISGLLDLYEFGS--GTKW----LVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVK 679 (725)
Q Consensus 621 --------------D-yA~li~aLL~LYe~Tg--d~~y----L~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k 679 (725)
| -+.++.+|...+.+.. |+.| |+.|+++++.+... .|.|-..... .
T Consensus 159 ~R~~~~is~~~p~sd~a~~~AAalA~as~vfk~~D~~YA~~ll~~Ak~ly~~a~~~-----~g~y~~~~~~-~------- 225 (495)
T PLN03009 159 PRTVYAVNAPNPASDVAGETAAALAASSMAFRSSDPGYSETLLRNAIKTFQFADMY-----RGAYSDNDDI-K------- 225 (495)
T ss_pred CCeEEEecCCCCccHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHc-----CCCccCCccc-c-------
Confidence 1 2456666666676655 5554 78888888887652 3444322100 0
Q ss_pred cCCCCCCCCh---HHHHHHHHHHHHHhhCCCCchHHHHHHHHH
Q 004888 680 EDHDGAEPSG---NSVSVINLVRLASIVAGSKSDYYRQNAEHS 719 (725)
Q Consensus 680 ~~~D~a~PS~---Nsv~a~~LlrL~~~t~~~~~~~y~~~A~~~ 719 (725)
...-...++. +--++-+-..|+..||+ ..|.+.++..
T Consensus 226 ~g~~~~Y~~~s~~~DE~~WAAawLy~aTgd---~~Yl~~~~~~ 265 (495)
T PLN03009 226 DGVCPFYCDFDGYQDELLWGAAWLRRASGD---DSYLNYIENN 265 (495)
T ss_pred CccccCcCCcccccHHHHHHHHHHHHHhCC---HHHHHHHHHh
Confidence 0000012221 23566777788999997 6899888654
No 341
>TIGR02393 RpoD_Cterm RNA polymerase sigma factor RpoD, C-terminal domain. This model represents the well-conserved C-terminal region of the major, essential sigma factor of most bacteria. Members of this clade show considerable variability in domain architecture and molecular weight, as well as in nomenclature: RpoD in E. coli and other Proteobacteria, SigA in Bacillus subtilis and many other Gram-positive bacteria, HrdB in Streptomyces, MysA in Mycobacterium smegmatis, etc.
Probab=30.52 E-value=1e+02 Score=31.96 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=25.6
Q ss_pred chHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 004888 500 SSASASKLGMPLEKYLNILGECRRKLFD 527 (725)
Q Consensus 500 ~~~~a~~~g~~~e~~~~~l~~~r~kL~~ 527 (725)
..++|..+|++.+.+.++...+++||.+
T Consensus 199 ~~EIA~~lgis~~~V~q~~~~al~kLr~ 226 (238)
T TIGR02393 199 LEEVGKEFNVTRERIRQIESKALRKLRH 226 (238)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhh
Confidence 4689999999999999999999999975
No 342
>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 37 GH37 from CAZY comprises enzymes with only one known activity; trehalase (3.2.1.28 from EC). Trehalase is the enzyme responsible for the degradation of the disaccharide alpha,alpha-trehalose yielding two glucose subunits []. It is an enzyme found in a wide variety of organisms and whose sequence has been highly conserved throughout evolution.; GO: 0004555 alpha,alpha-trehalase activity, 0005991 trehalose metabolic process; PDB: 2JJB_B 2WYN_B 2JG0_A 2JF4_A 3C67_A 3D3I_B 3C69_A 3C68_A 2Z07_B.
Probab=30.36 E-value=80 Score=37.06 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHccccCCCcccccCC
Q 004888 626 ISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNTTG 669 (725)
Q Consensus 626 i~aLL~LYe~Tgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~ 669 (725)
...|..+++..|+. .|.++|.++.+.+.+.|||++.|.||+-.-
T Consensus 317 e~~LA~~a~~lG~~~~a~~~~~~A~~~~~aI~~~lWdee~g~~~Dyd~ 364 (512)
T PF01204_consen 317 EKDLAEFAELLGDQEKAEEYRQRAEERKEAINQYLWDEEDGFYYDYDL 364 (512)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHTEETTTTEE--EET
T ss_pred HHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhCccCCCCeEEeeeC
Confidence 34566778888865 689999999999999999999999987543
No 343
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=29.91 E-value=1.1e+03 Score=28.61 Aligned_cols=207 Identities=16% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceee--eccC-CCccccccccccCcceEEechHHHHHHh
Q 004888 381 DQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS--AEDA-DSAETEGATRKKEGAFYVWTSKEVEDIL 457 (725)
Q Consensus 381 DNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~Ggfys--a~DA-Ds~~~~~~~~~~EGayY~wt~~Ei~~~l 457 (725)
|.+..+.++..+. |.+.|++++.|+.+ +..++|-++. .+|. |..+....-++++.+|=||.-.-.-...
T Consensus 289 D~~~~~~AL~~~G-------~~~~a~~~f~~l~~-~~~~~~~~~~~y~~~g~~~~~~w~~~~~~~~~~pv~~~~~a~~~~ 360 (612)
T COG3387 289 DASYAALALLAIG-------YKKEALRFFEFLPD-VQTPNGKLYHKYSIDGSDLAESWLPVSGYYNSFPVRIGNTALVQG 360 (612)
T ss_pred cHHHHHHHHHHcC-------CHHHHHHHHHHHHH-hhCCCCceeeEEecCCCccccccccccCCCCCCceEEcchhhHHH
Q ss_pred h--hhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHH-----------
Q 004888 458 G--EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRK----------- 524 (725)
Q Consensus 458 g--~~~~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~e~~~~~l~~~r~k----------- 524 (725)
. .........+.+...+. .........+.. .++
T Consensus 361 ~ld~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~-~~~~~~~~~~p~~~ 406 (612)
T COG3387 361 ALDVYGSIMNDIYFYAKYYA---------------------------------IYILPAADYLRR-MEKIKANLPTPDFD 406 (612)
T ss_pred HHHHHHHHHHHHHHHHhhcc---------------------------------hhhHHHHHHHHH-HHhhhcCCCCCccc
Q ss_pred HHhhhccCCCCCCCcchhhhcHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeE
Q 004888 525 LFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRL 604 (725)
Q Consensus 525 L~~~R~~R~~P~lDdKiitsWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l 604 (725)
|.+.|.. +.=-+.+|.|.||...+.+....-..+.+ +.|...|.++-+.+.++++..++|.+
T Consensus 407 ~WEer~g----~~~yt~~~~~agLd~A~~lA~~~gd~~~a--------------~~~~~~ad~ik~~v~~~~~~~~~~~f 468 (612)
T COG3387 407 LWEERGG----HFTYTKATVYAGLDAAADLAEEFGDKGSA--------------EHWRKTADELKEAVLRRGYAEDGGYF 468 (612)
T ss_pred eecccCC----cccchHHHHHHHHHHHHHHHHHhCCcHHH--------------HHHHHHHHHHHHHHHHhcccccCCee
Q ss_pred EEEecCCCCCCCCCcchH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004888 605 QHSFRNGPSKAPGFLDDY--AFLISGLLDLYEFGSGTKWLVWAIELQNTQDE 654 (725)
Q Consensus 605 ~~s~~~g~~~~~~~leDy--A~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~ 654 (725)
-..+.+ .+++. |.+....+--+.-..|++.+...+.+.+....
T Consensus 469 ~r~~~~-------~~~~~vDasll~l~~fg~i~~~D~~~~~t~~~I~~~L~~ 513 (612)
T COG3387 469 VRSLGR-------KPDDTVDASLLGLVLFGFIPPDDPRILATVEAIERELLV 513 (612)
T ss_pred ehhcCC-------CccccccHHHhhccccCccCCCCHHHHHHHHHHHHHHhh
No 344
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=29.74 E-value=76 Score=32.64 Aligned_cols=73 Identities=18% Similarity=0.253 Sum_probs=51.9
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcC---cEEEEEcCCCCcchHHHHHHHHHHhcCCCCc
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW---FVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~---FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~ 204 (725)
.+.++.-++..| |++.||-+.-.-|+.|++- + +.|.+. --.||||++.-|-+...+ ++.-.
T Consensus 75 kdf~~~~~kS~k-VVcHFY~~~f~RCKimDkh------L-e~LAk~h~eTrFikvnae~~PFlv~kL--------~IkVL 138 (211)
T KOG1672|consen 75 KDFFEEVKKSEK-VVCHFYRPEFFRCKIMDKH------L-EILAKRHVETRFIKVNAEKAPFLVTKL--------NIKVL 138 (211)
T ss_pred HHHHHHhhcCce-EEEEEEcCCCcceehHHHH------H-HHHHHhcccceEEEEecccCceeeeee--------eeeEe
Confidence 566777666554 7889999999999999852 2 333333 346789999888765544 66678
Q ss_pred CcEEEecCCCCcc
Q 004888 205 PLSVFLSPDLKPL 217 (725)
Q Consensus 205 P~~vfl~pdG~~i 217 (725)
|+.+++ .+|+..
T Consensus 139 P~v~l~-k~g~~~ 150 (211)
T KOG1672|consen 139 PTVALF-KNGKTV 150 (211)
T ss_pred eeEEEE-EcCEEE
Confidence 999877 566654
No 345
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=29.71 E-value=13 Score=33.14 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=18.1
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCcee
Q 004888 388 VYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 424 (725)
Q Consensus 388 ~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~Ggfy 424 (725)
.++.++...+++.+.+.++++++||.+.. .++|||-
T Consensus 31 ~~~~al~~~~~~~~~~ai~ka~~~l~~~Q-~~dG~w~ 66 (109)
T PF13243_consen 31 ALILALAAAGDAAVDEAIKKAIDWLLSHQ-NPDGGWG 66 (109)
T ss_dssp ----------TS-SSBSSHHHHHHHHH----TTS--S
T ss_pred cccccccccCCCCcHHHHHHHHHHHHHhc-CCCCCCC
Confidence 33445555578889999999999999854 7789884
No 346
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=29.43 E-value=2.2e+02 Score=31.12 Aligned_cols=56 Identities=9% Similarity=0.021 Sum_probs=38.2
Q ss_pred ccchHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEc
Q 004888 124 FAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVD 180 (725)
Q Consensus 124 ~~~~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD 180 (725)
....++++++|.+.+.|.||++.. -|+....-....-+-.++.++.+++-+.++.+
T Consensus 179 ~~eL~~ai~~A~~~~GpalIeV~~-~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (301)
T PRK05778 179 VKQLVELIKKAISHKGFAFIDVLS-PCVTFNGRNTSTKSPAYMREYYKKRVYKLKLE 234 (301)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcC-CCCCCCCcCCcccCHHHHHHHHHhhcEEcccc
Confidence 334578999999999999999954 45655532222223346677888888888544
No 347
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=28.93 E-value=1.8e+02 Score=32.01 Aligned_cols=75 Identities=24% Similarity=0.280 Sum_probs=49.0
Q ss_pred hcCCcEEEEEec----cCChhhHhhhhhccCCHHHHHH-------Hhc-CcEEEEEcCCCCcchHHHHHHHHHHhcCCCC
Q 004888 136 KRDVPIFLSIGY----STCHWCHVMEVESFEDEGVAKL-------LND-WFVSIKVDREERPDVDKVYMTYVQALYGGGG 203 (725)
Q Consensus 136 ~e~KpI~l~~g~----~wC~~C~~Me~e~f~d~eVa~~-------ln~-~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G 203 (725)
-+|=-+++.|+| ..|.-|+..++ .|. -|++- .|. .--.-+||.||-|++-+.+ +...
T Consensus 58 prNys~IvmftA~~~~~~C~lC~~~~~-Ef~--iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~Fq~l--------~ln~ 126 (331)
T KOG2603|consen 58 PRNYSLIVMFTALQPHSQCQLCLQAEE-EFQ--IVANSWRYNSPFSNGTKLFFCMVDYDESPQVFQQL--------NLNN 126 (331)
T ss_pred CCCeEEEEEccccCCCCcCchhhhHHH-HHH--HHHHHhhccCCCCCcceEEEEEEeccccHHHHHHh--------cccC
Confidence 334447778887 57999999884 332 12111 221 2345689999988876554 6778
Q ss_pred cCcEEEecC-CCCcccccc
Q 004888 204 WPLSVFLSP-DLKPLMGGT 221 (725)
Q Consensus 204 ~P~~vfl~p-dG~~i~~~t 221 (725)
.|+.+++.| .|++..+.+
T Consensus 127 ~P~l~~f~P~~~n~~~s~~ 145 (331)
T KOG2603|consen 127 VPHLVLFSPAKGNKKRSDQ 145 (331)
T ss_pred CCeEEEeCCCccccccCcc
Confidence 999999977 466664433
No 348
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=28.93 E-value=3.1e+02 Score=32.40 Aligned_cols=92 Identities=16% Similarity=0.189 Sum_probs=56.3
Q ss_pred hhcCCcEEE-EEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCC
Q 004888 135 RKRDVPIFL-SIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (725)
Q Consensus 135 k~e~KpI~l-~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pd 213 (725)
.+-.+||-| .|..+.|.+|..|.. .+ .++++ |++..-....|..+.++..+.| ++.-.|+++|++.+
T Consensus 362 ~~l~~~v~l~~~~~~~~~~~~e~~~-~l--~e~~~-~s~~i~~~~~~~~~~~~~~~~~--------~v~~~P~~~i~~~~ 429 (555)
T TIGR03143 362 GRLENPVTLLLFLDGSNEKSAELQS-FL--GEFAS-LSEKLNSEAVNRGEEPESETLP--------KITKLPTVALLDDD 429 (555)
T ss_pred HhcCCCEEEEEEECCCchhhHHHHH-HH--HHHHh-cCCcEEEEEeccccchhhHhhc--------CCCcCCEEEEEeCC
Confidence 346677644 566678999999864 22 24543 3444434456766656665555 66677999999877
Q ss_pred CCccccccc--cCCCCCCCcchHHHHHHHHHHH
Q 004888 214 LKPLMGGTY--FPPEDKYGRPGFKTILRKVKDA 244 (725)
Q Consensus 214 G~~i~~~tY--~p~~~~~~~~~F~~~L~~i~~~ 244 (725)
|+.. +..| +|.. ..|-.++..|..+
T Consensus 430 ~~~~-~i~f~g~P~G-----~Ef~s~i~~i~~~ 456 (555)
T TIGR03143 430 GNYT-GLKFHGVPSG-----HELNSFILALYNA 456 (555)
T ss_pred Cccc-ceEEEecCcc-----HhHHHHHHHHHHh
Confidence 6531 1122 3532 4688888877655
No 349
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=28.80 E-value=76 Score=29.23 Aligned_cols=61 Identities=10% Similarity=0.075 Sum_probs=32.1
Q ss_pred EEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCcc
Q 004888 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (725)
Q Consensus 143 l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i 217 (725)
..++.++|+.|++.. ++|++ +.-...+|..+.|.-.....+.++.+ |.|..-+++..|...
T Consensus 3 ~iY~~~~C~~c~ka~----------~~L~~~gi~~~~idi~~~~~~~~el~~~~~~~----~~~~~~l~n~~~~~~ 64 (115)
T cd03032 3 KLYTSPSCSSCRKAK----------QWLEEHQIPFEERNLFKQPLTKEELKEILSLT----ENGVEDIISTRSKAF 64 (115)
T ss_pred EEEeCCCCHHHHHHH----------HHHHHCCCceEEEecCCCcchHHHHHHHHHHh----cCCHHHHHhcCcHHH
Confidence 357889999999865 23333 22233445544443333343444433 345555566665543
No 350
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=28.61 E-value=93 Score=25.41 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=32.4
Q ss_pred EEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCcccc
Q 004888 144 SIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 144 ~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~~ 219 (725)
-++..+|+.|++.. -+....+-.|..+.+|..+.. ... ...+.+..|+.+ +.+|+.+..
T Consensus 3 Ly~~~~~p~~~rvr-------~~L~~~gl~~~~~~~~~~~~~---~~~-----~~~~~~~vP~L~--~~~~~~l~e 61 (71)
T cd03037 3 LYIYEHCPFCVKAR-------MIAGLKNIPVEQIILQNDDEA---TPI-----RMIGAKQVPILE--KDDGSFMAE 61 (71)
T ss_pred eEecCCCcHhHHHH-------HHHHHcCCCeEEEECCCCchH---HHH-----HhcCCCccCEEE--eCCCeEeeh
Confidence 35788999999764 233333335766666643221 111 123556678864 345665543
No 351
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=28.61 E-value=1.4e+02 Score=24.27 Aligned_cols=51 Identities=20% Similarity=0.065 Sum_probs=31.8
Q ss_pred EEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEE
Q 004888 144 SIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (725)
Q Consensus 144 ~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~v 208 (725)
-++..+|++|++.. -..+..+-.|..+.+|....+ ..| ......+.+|+.+
T Consensus 3 ly~~~~~~~~~~v~-------~~l~~~gi~~~~~~v~~~~~~---~~~----~~~~p~~~vP~l~ 53 (73)
T cd03059 3 LYSGPDDVYSHRVR-------IVLAEKGVSVEIIDVDPDNPP---EDL----AELNPYGTVPTLV 53 (73)
T ss_pred EEECCCChhHHHHH-------HHHHHcCCccEEEEcCCCCCC---HHH----HhhCCCCCCCEEE
Confidence 45778999999875 234445556877778765432 122 1234677899553
No 352
>PRK13271 treA trehalase; Provisional
Probab=28.26 E-value=93 Score=37.07 Aligned_cols=42 Identities=12% Similarity=0.070 Sum_probs=34.1
Q ss_pred HHHHHHHHcCCH----HHHHHHHHHHHHHHHHccccCCCcccccCC
Q 004888 628 GLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNTTG 669 (725)
Q Consensus 628 aLL~LYe~Tgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~ 669 (725)
-|.++++..|+. .|.++|+++.+.+.+.|||++.|.||+...
T Consensus 351 ~LA~la~~lGd~~~A~~y~~~A~~rr~AI~~~LWnee~G~f~DYDl 396 (569)
T PRK13271 351 ILARASKAAGDNAMANQYETLANARQKAIEKYLWNDKEGWYADYDL 396 (569)
T ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEC
Confidence 344566777776 689999999999999999999899987653
No 353
>PF03792 PBC: PBC domain; InterPro: IPR005542 Pbx proteins are members of the TALE (three-amino-acid loop extension) family of atypical homeodomain proteins, whose members are characterised by a three-residue insertion in the first helix of the homeodomain involved in their interaction with Hox proteins. Examination of Pbx1 has shown that, in addition to the homeodomain, a short 16-residue C-terminal tail is essential for maximal cooperative interactions with Hox partners as well as for maximal monomeric binding of Pbx1 to DNA. The PBX domain is a bipartite acidic domain [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=27.86 E-value=4.3e+02 Score=27.09 Aligned_cols=134 Identities=13% Similarity=0.200 Sum_probs=78.6
Q ss_pred hhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCC-cchH-HHHHHHHHHhcCCCCcCcEEEecCCCCccccccccCCCCCC
Q 004888 152 WCHVMEVESFEDEGVAKLLNDWFVSIKVDREER-PDVD-KVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKY 229 (725)
Q Consensus 152 ~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~-pd~~-~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~~~tY~p~~~~~ 229 (725)
-||.|..-.|+ -+-+.=.+..+.++---++. ||.. ...-+.+.+ -|+.|. +++|.......--+++...
T Consensus 34 ~~hr~k~ALfs--VLcE~KEkt~LSir~~qee~p~dpQl~RLDNML~A-EGV~gP------e~~~~~~~~~~~~~~~~~~ 104 (191)
T PF03792_consen 34 NCHRMKPALFS--VLCEIKEKTVLSIRNIQEEDPPDPQLMRLDNMLLA-EGVAGP------EKGGRAAAAAAGTAADNSI 104 (191)
T ss_pred cCCCCchhhHH--HHHHHHhhcCccccccCCcCCCchhhhhhhcchhh-hcCcCC------CCcccchhhhhccCccccc
Confidence 48888854443 11121123455555433443 3311 111111111 266665 4444443222222445445
Q ss_pred CcchHHHHHHHHHHHHhhchHHHHHhHHHHHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHhhccc
Q 004888 230 GRPGFKTILRKVKDAWDKKRDMLAQSGAFAIEQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYDS 298 (725)
Q Consensus 230 ~~~~F~~~L~~i~~~~~~~~~~l~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~ 298 (725)
...++...|..|...|...-++..+....+.+.+.+.+...+.-. +++...++.++..+.+.|+.
T Consensus 105 d~~dYr~kL~~ir~~y~~el~kye~ac~eF~~hV~~lLreQs~~R----PIs~keiE~m~~~i~~Kf~~ 169 (191)
T PF03792_consen 105 DHSDYRAKLSQIRQIYHSELEKYEQACNEFTEHVMNLLREQSEFR----PISPKEIERMVNIIHRKFSK 169 (191)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcccC----CCCHHHHHHHHHHHHHHHHH
Confidence 566899999999999999999999999999998888876542222 34566778888888876654
No 354
>PRK13272 treA trehalase; Provisional
Probab=27.27 E-value=8.6e+02 Score=28.97 Aligned_cols=127 Identities=18% Similarity=0.182 Sum_probs=74.1
Q ss_pred hhcHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCCCCCC
Q 004888 543 VSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSKAPGF 618 (725)
Q Consensus 543 tsWNal~I~---aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s-~~~g~~~~~~~ 618 (725)
+.-|+++.. .|++.++.+|+.. ...+|.+.|.+..+.|.+.|||+ .|.++.- .+.++.
T Consensus 340 VDLNalL~~~e~~LA~~~~~lG~~~------------~a~~~~~~A~~r~~aI~~~lWde-~G~~~DYD~~~~~~----- 401 (542)
T PRK13272 340 VDLNSLLYHLERTLAQACASSGLAA------------CSQDYAALAQQRKQAIDAHLWNP-AGYYADYDWQTRTL----- 401 (542)
T ss_pred ccHHHHHHHHHHHHHHHHHHhCChH------------HHHHHHHHHHHHHHHHHHhccCc-CceEEeeccCCCCc-----
Confidence 457888866 5777888888632 12578999999999999999996 6554432 223321
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCC--CCChHHHHHHH
Q 004888 619 LDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGA--EPSGNSVSVIN 696 (725)
Q Consensus 619 leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a--~PS~Nsv~a~~ 696 (725)
.+ .+.+.+++=|+-=.-++ +.|..+.+.+..+|.. .||.-.+..+ ....=|++ =|-.+-+++..
T Consensus 402 -~~-~~s~a~f~PLwag~a~~---~~a~~l~~~l~~~~l~--~gGlpTt~~~-------sgqQWD~PN~WaPlq~i~i~G 467 (542)
T PRK13272 402 -SE-QVTAAALYPLFAGLASD---DRAKRTADSVRAQLLR--PGGLATTALK-------TGQQWDEPNGWAPLQWVAVDG 467 (542)
T ss_pred -cc-cccHHHHHHHHcCCCCH---HHHHHHHHHHHHhccC--CCCcCCCCCC-------ccccCCCCCccHhHHHHHHHH
Confidence 22 34467788887433333 4566777766666653 3555433211 11112332 23445566666
Q ss_pred HHHHH
Q 004888 697 LVRLA 701 (725)
Q Consensus 697 LlrL~ 701 (725)
|.+.+
T Consensus 468 L~~yG 472 (542)
T PRK13272 468 LRRYG 472 (542)
T ss_pred HHHcC
Confidence 66654
No 355
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=27.20 E-value=5.7e+02 Score=26.82 Aligned_cols=130 Identities=8% Similarity=0.079 Sum_probs=80.2
Q ss_pred CCCCccccchHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhcc---CCHHHHHHHhcCcEEEEEcCCCCc-chHHHHHH
Q 004888 118 HNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESF---EDEGVAKLLNDWFVSIKVDREERP-DVDKVYMT 193 (725)
Q Consensus 118 ~~~V~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f---~d~eVa~~ln~~FV~VkvD~ee~p-d~~~~y~~ 193 (725)
..|-.|+.+.++-++.+++.|---++.+++---. ++ ...+| +++++.+.+++. + ...+ ...+ -+...+..
T Consensus 87 i~p~~~~~~a~~il~~~~~~gv~~Ii~Lgg~~~~-~~--~~~v~~~at~~~~~~~l~~~-~-~~~~-~g~i~G~~g~ll~ 160 (238)
T TIGR00161 87 IPPAVVYDMTNAIVEWMVRNNSRELISFNGMVVR-EK--SQPVFGAANSQELIERLKDL-I-EIFP-FGNLNGISGTLLT 160 (238)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEEeCccCC-CC--CCcEEEEECCHHHHHHHHHh-c-CcCC-CCEEechhHHHHH
Confidence 3556799999999999999998877777662221 12 23333 578898888765 1 1111 1111 12233333
Q ss_pred HHHHhcCCCCcCcEEEecCCCCccccccccCCCCCCCcchHHHHHHHHHHHHh--hchHHHHHhHHHHHHHHHHHhh
Q 004888 194 YVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWD--KKRDMLAQSGAFAIEQLSEALS 268 (725)
Q Consensus 194 ~~q~~~g~~G~P~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i~~~~~--~~~~~l~~~a~~~~~~l~~~~~ 268 (725)
.+ ...|+|..+++.+- .++.| + ...=..+|+.+.+.+. =+.+.|++.|+++.+++++...
T Consensus 161 ~a----~~~gi~~i~Ll~et------~~~~P-D----P~AA~~ll~~l~~l~~~~id~~~L~e~Ae~ie~~~~el~e 222 (238)
T TIGR00161 161 RC----AVNDIPAICLLAET------LGPYP-D----PRAAASLVEVLNKMLNTNVDPEPLLKEAEAIESRLKKLAE 222 (238)
T ss_pred HH----HHcCCCEEEEEEeC------CCCCC-C----HHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 33 34589999999654 22333 2 2245666777766664 4688999999888877766543
No 356
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=27.13 E-value=1e+02 Score=28.05 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=25.8
Q ss_pred EEEeccCChhhHhhhhhccCCHHHHHHHhcC-cEEEEEcCCCCcchHHHHHHHHH
Q 004888 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQ 196 (725)
Q Consensus 143 l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~-FV~VkvD~ee~pd~~~~y~~~~q 196 (725)
..++.++|.+|++.. ++|+++ .-+..+|..+.|--.......++
T Consensus 2 ~iy~~~~C~~crka~----------~~L~~~~i~~~~~di~~~p~s~~eL~~~l~ 46 (105)
T cd03035 2 TLYGIKNCDTVKKAR----------KWLEARGVAYTFHDYRKDGLDAATLERWLA 46 (105)
T ss_pred EEEeCCCCHHHHHHH----------HHHHHcCCCeEEEecccCCCCHHHHHHHHH
Confidence 457899999999865 455543 33444566554433334444443
No 357
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins.
Probab=26.63 E-value=1.1e+03 Score=28.35 Aligned_cols=104 Identities=10% Similarity=0.059 Sum_probs=57.6
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccc-----cccccCC---------
Q 004888 617 GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVL-----LRVKEDH--------- 682 (725)
Q Consensus 617 ~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~-----~r~k~~~--------- 682 (725)
+..|---+.+.++-+.++.|||..+++.....+..+.+.+.+..+ |-...+.+ .++ +.+++..
T Consensus 345 ntvDAtLWfi~al~~Y~~~tgD~~~l~~l~p~l~~ii~~y~~G~~--~~i~~d~d-GLi~~g~~lTWMDa~~g~~~~tPR 421 (575)
T TIGR01561 345 NGVDASLWAIHAIDKTFAYSQDFLFIRDVVDKVLDIIDNYCAGND--FAIGMDND-LIFHKGAPLTWMDAKVDERAVTPR 421 (575)
T ss_pred CCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCC--cEEEECCC-ccEeCCCCCCCCCCCCCCccCCCC
Confidence 445556789999999999999998875544444444444433211 11001111 111 1233322
Q ss_pred CCCCCChHHHHHHHHHH---HHHhhCCCCchHHHHHHHHHHHHhh
Q 004888 683 DGAEPSGNSVSVINLVR---LASIVAGSKSDYYRQNAEHSLYLRQ 724 (725)
Q Consensus 683 D~a~PS~Nsv~a~~Llr---L~~~t~~~~~~~y~~~A~~~l~~~~ 724 (725)
+|+.---|+....+|.. |+...|+. ...|.+.|+++-+.|.
T Consensus 422 ~G~~VEInALwYnAL~~~a~la~~~g~~-a~~y~~~A~~lk~~F~ 465 (575)
T TIGR01561 422 AGAACEINALWYNALKTAEFLGNELGED-AESLEEKAAGVAKNFA 465 (575)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHHH
Confidence 22333456665555555 45555652 3579999999887774
No 358
>PRK05901 RNA polymerase sigma factor; Provisional
Probab=26.55 E-value=1.2e+02 Score=35.80 Aligned_cols=46 Identities=17% Similarity=0.140 Sum_probs=36.5
Q ss_pred hHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 004888 460 HAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFD 527 (725)
Q Consensus 460 ~~~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~e~~~~~l~~~r~kL~~ 527 (725)
+..++..+||+.... + .+..+++..+|++.+.+.++-..+..||+.
T Consensus 452 Er~VI~lRyGL~~~e---------------~-------~TL~EIa~~lGVSrERVRQIe~kAL~KLR~ 497 (509)
T PRK05901 452 EAGVIRMRFGLTDGQ---------------P-------KTLDEIGQVYGVTRERIRQIESKTLRKLRH 497 (509)
T ss_pred HHHHHHHHhhccCCC---------------C-------CCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 467888889985311 1 135689999999999999999999999985
No 359
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]
Probab=25.64 E-value=4.8e+02 Score=31.66 Aligned_cols=136 Identities=15% Similarity=0.159 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEe-c--CCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc-
Q 004888 583 EVAESAASFIRRHLYDEQTHRLQHSF-R--NGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLD- 658 (725)
Q Consensus 583 ~~A~~~a~~l~~~l~d~~~G~l~~s~-~--~g~~~~~~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D- 658 (725)
+.|+.....+.++. +.|++.|.. . ++.+ .-+..|.-=..|..+.+.+..|+|..++.........+.+.+.-
T Consensus 303 elArg~L~~~a~~~---~~GkIPhe~~~~~~~~~-~Y~tvD~t~~~i~~~~~y~~~t~d~~~i~e~~~~v~~a~d~~~~~ 378 (641)
T COG3408 303 ELARGTLNTLARYS---EPGKIPHEILLSIPGEP-YYNTVDATPLFIYLLGAYLKYTGDTEFIRELWPSVGAALDWILKG 378 (641)
T ss_pred HHHHHHHHHHHhhc---cCCCCcchhhhcCCCcc-eeccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhc
Confidence 56777777776663 368888875 2 2322 12334445567788888999999999887666655555554321
Q ss_pred cCCCcccccCCCCCc---cccccccCCCC---CCC------ChHHH---HHHHHHHHHHhhCCC-CchHHHHHHHHHHHH
Q 004888 659 REGGGYFNTTGEDPS---VLLRVKEDHDG---AEP------SGNSV---SVINLVRLASIVAGS-KSDYYRQNAEHSLYL 722 (725)
Q Consensus 659 ~~~Ggyf~t~~~~~~---~~~r~k~~~D~---a~P------S~Nsv---~a~~LlrL~~~t~~~-~~~~y~~~A~~~l~~ 722 (725)
.+.| |.+.++.-. ....+++..+. ..| --|++ +..++.+++.++++. ..+.|.+.|+++.+.
T Consensus 379 ~~~~--~~~~~~~l~~~~~~~tW~Ds~~~~~~~~~~~g~pi~i~al~~~~~~a~~~~a~ll~~~~~~~~~~~~a~~l~~~ 456 (641)
T COG3408 379 FDFG--FDTYGDGLLEGGSNQTWMDSGDDIFAVTPRAGKPVAINALQYYALKAALRLANLLGDEEDAARLEKIARRLKES 456 (641)
T ss_pred CCcc--ceecCcccccCCCCCCCeecCCccccccCCCCCceeHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 1111 221111000 00111111111 112 34566 777888889888811 136789999998877
Q ss_pred hh
Q 004888 723 RQ 724 (725)
Q Consensus 723 ~~ 724 (725)
|.
T Consensus 457 F~ 458 (641)
T COG3408 457 FE 458 (641)
T ss_pred HH
Confidence 63
No 360
>PLN02613 endoglucanase
Probab=25.59 E-value=1.2e+03 Score=27.61 Aligned_cols=119 Identities=14% Similarity=-0.002 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCC--CCC-------------------CcchHHHHHHHHHHHHHHcC
Q 004888 579 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK--APG-------------------FLDDYAFLISGLLDLYEFGS 637 (725)
Q Consensus 579 ~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~--~~~-------------------~leDyA~li~aLL~LYe~Tg 637 (725)
+..++.++=..+|+++..-. .+.+++...+|... .++ -.+--+.++.+|...+.+-.
T Consensus 112 ~d~ldeikw~lD~llkm~~~--~~~~~~QVGdg~~dH~~W~~Pe~~~~~R~~~~~t~~~pgTd~a~~~AAALAaas~vfk 189 (498)
T PLN02613 112 GYLRSAIRWGTDFILRAHTS--PTTLYTQVGDGNADHQCWERPEDMDTPRTLYKITSSSPGSEAAGEAAAALAAASLVFK 189 (498)
T ss_pred hHHHHHHHHHHHHHHHhccC--CCeEEEEeCCCCccccccCCccccCCCCeeEecCCCCCccHHHHHHHHHHHHHHHhcc
Confidence 78999999999999876533 45666554443210 011 11222445666666666665
Q ss_pred --CH----HHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHhhCCCCchH
Q 004888 638 --GT----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDY 711 (725)
Q Consensus 638 --d~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~t~~~~~~~ 711 (725)
|+ +.|+.|+++++....+ .|.|.....-..+ .-...| -.+-+-..|+..||+ ..
T Consensus 190 ~~D~~yA~~~L~~Ak~ly~~a~~~-----~g~y~~~~~~y~s----~s~~~D--------El~WAAawLy~aTGd---~~ 249 (498)
T PLN02613 190 DVDSSYSSKLLNHARSLFEFADKY-----RGSYQASCPFYCS----YSGYQD--------ELLWAAAWLYKATGE---KK 249 (498)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhC-----CCCcCCCCCcccc----cCccch--------HHHHHHHHHHHHhCC---HH
Confidence 34 4588999999888663 2333221000000 000011 245556788999997 68
Q ss_pred HHHHHHHH
Q 004888 712 YRQNAEHS 719 (725)
Q Consensus 712 y~~~A~~~ 719 (725)
|.+.++..
T Consensus 250 Yl~~~~~~ 257 (498)
T PLN02613 250 YLNYVISN 257 (498)
T ss_pred HHHHHHhc
Confidence 99887653
No 361
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=25.56 E-value=2.1e+02 Score=24.75 Aligned_cols=61 Identities=13% Similarity=0.101 Sum_probs=37.9
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCccc
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 218 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~ 218 (725)
+.-++...|++|++.. -+.+..+-.|-.+.+|....+ ..+ ...++.+.+|..+. .+|..+.
T Consensus 19 ~~Ly~~~~sp~~~kv~-------~~L~~~gl~~~~~~v~~~~~~---~~~----~~~np~~~vPvL~~--~~g~~l~ 79 (89)
T cd03055 19 IRLYSMRFCPYAQRAR-------LVLAAKNIPHEVININLKDKP---DWF----LEKNPQGKVPALEI--DEGKVVY 79 (89)
T ss_pred EEEEeCCCCchHHHHH-------HHHHHcCCCCeEEEeCCCCCc---HHH----HhhCCCCCcCEEEE--CCCCEEE
Confidence 3445778899999874 344445556888888876432 122 22346678898873 3456554
No 362
>PF02011 Glyco_hydro_48: Glycosyl hydrolase family 48; InterPro: IPR000556 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 48 GH48 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). The largest cellulase gene sequenced to date is one of the cellulases (celA) from the genome of the thermophilic anaerobic bacterium Caldocellum saccharolyticum. The celA gene product is a polypeptide of 1751 amino acids; this has a multidomain structure comprising two catalytic domains and two cellulose-binding domains, linked by Pro-Thr-rich regions. The N-terminal domain encodes an endoglucanase activity on carboxymethylcellulose, consistent with its similarity to several endo-1, 4-beta-D-glucanase sequences. The C-terminal domain shows similarity to a cellulase from Clostridium thermocellum (CelS), which acts synergistically with a second component to hydrolyse crystalline cellulose [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1FAE_A 1FBO_A 1FBW_A 1FCE_A 1F9D_A 1F9O_A 1G9G_A 1G9J_A 2QNO_A 1L1Y_E ....
Probab=25.14 E-value=6.7e+02 Score=29.94 Aligned_cols=111 Identities=12% Similarity=0.024 Sum_probs=67.8
Q ss_pred CCCCcchhhhcHHHHHHH---HHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-c-
Q 004888 535 PHLDDKVIVSWNGLVISS---FARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-R- 609 (725)
Q Consensus 535 P~lDdKiitsWNal~I~a---La~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~-~- 609 (725)
|...|---..|=||-.|+ +|+.|-++|| ++...+-.+-+.|++.+..-..+|.+..-. -
T Consensus 395 PVyhDPpSN~WfG~Q~Wsm~R~AeyYy~tGd----------------~~ak~ildKWv~W~~~~~~~~~dG~f~IPs~L~ 458 (619)
T PF02011_consen 395 PVYHDPPSNRWFGMQAWSMERVAEYYYETGD----------------ARAKAILDKWVAWALSNTTVNSDGTFEIPSTLE 458 (619)
T ss_dssp SS-TTTTTTTBTHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHTT-EE-TTS-EEEEEEEE
T ss_pred cccCCCCCCCcccccchhHHHHHHHHHHhcc----------------HHHHHHHHHHHHHHHhhceeCCCCcEecCCCCc
Confidence 433333334577888776 5666778888 566777778888888775332345544211 1
Q ss_pred -CCCCCCC---------------CCcchH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCC
Q 004888 610 -NGPSKAP---------------GFLDDY---AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREG 661 (725)
Q Consensus 610 -~g~~~~~---------------~~leDy---A~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~ 661 (725)
.|+|+.+ ....|- +-++.+|+-....+|+.+.++.|++|++.+.++.-|..+
T Consensus 459 WSGqPDtW~~s~t~N~nLHV~V~~yg~DvGva~S~AktL~yYAA~sg~~~Ak~~Ak~LLD~iW~~~~D~~G 529 (619)
T PF02011_consen 459 WSGQPDTWTGSPTGNPNLHVTVTDYGQDVGVAGSYAKTLTYYAAKSGDQEAKDTAKQLLDAIWNNYQDDKG 529 (619)
T ss_dssp EES-----TTS----TTEEEEEEEEE--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCECTTC
T ss_pred ccCCCCCccCCCCCCCceEEEEecCCCchhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhCCCCCc
Confidence 2443211 111222 568888998889999999999999999999998877543
No 363
>PHA03075 glutaredoxin-like protein; Provisional
Probab=24.78 E-value=98 Score=29.25 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=31.0
Q ss_pred CcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcC
Q 004888 139 VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDR 181 (725)
Q Consensus 139 KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ 181 (725)
|.++|-||-+-|+-|..-. ++.+.|.+.|-.++||.
T Consensus 2 K~tLILfGKP~C~vCe~~s-------~~l~~ledeY~ilrVNI 37 (123)
T PHA03075 2 KKTLILFGKPLCSVCESIS-------EALKELEDEYDILRVNI 37 (123)
T ss_pred CceEEEeCCcccHHHHHHH-------HHHHHhhccccEEEEEe
Confidence 6789999999999999875 55678888899999985
No 364
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=24.66 E-value=1.9e+02 Score=23.46 Aligned_cols=54 Identities=15% Similarity=0.013 Sum_probs=33.2
Q ss_pred EEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEE
Q 004888 144 SIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (725)
Q Consensus 144 ~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~v 208 (725)
-++..+|+.|++.. -+.+..+-.|-.+.+|..+.......|. ..+..+..|+.+
T Consensus 3 Ly~~~~~~~~~~v~-------~~l~~~gi~~e~~~i~~~~~~~~~~~~~----~~~p~~~vP~l~ 56 (74)
T cd03045 3 LYYLPGSPPCRAVL-------LTAKALGLELNLKEVNLMKGEHLKPEFL----KLNPQHTVPTLV 56 (74)
T ss_pred EEeCCCCCcHHHHH-------HHHHHcCCCCEEEEecCccCCcCCHHHH----hhCcCCCCCEEE
Confidence 46778999998643 3445556678888888654322222332 234567789986
No 365
>PRK05949 RNA polymerase sigma factor; Validated
Probab=24.27 E-value=2.1e+02 Score=31.49 Aligned_cols=46 Identities=9% Similarity=0.079 Sum_probs=36.6
Q ss_pred hHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 004888 460 HAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFD 527 (725)
Q Consensus 460 ~~~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~e~~~~~l~~~r~kL~~ 527 (725)
+..++.-.||+..... .+.+++|+.+|++.+.+++++..++++|.+
T Consensus 271 er~Vi~lr~gl~~~e~----------------------~Tl~EIa~~lgiS~erVrq~~~rAl~kLr~ 316 (327)
T PRK05949 271 QREVLTLRFGLEDGKE----------------------LSLAKVGERLNLSRERVRQLEHQALAHLRR 316 (327)
T ss_pred HHHHHHHHhccCCCCC----------------------CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4667788888853221 135689999999999999999999999986
No 366
>PRK07405 RNA polymerase sigma factor SigD; Validated
Probab=24.00 E-value=2.2e+02 Score=31.23 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=26.5
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 004888 499 DSSASASKLGMPLEKYLNILGECRRKLFD 527 (725)
Q Consensus 499 ~~~~~a~~~g~~~e~~~~~l~~~r~kL~~ 527 (725)
+.+++++.+|++.+.++++...++.||.+
T Consensus 278 Tl~EIa~~lgiS~erVRqi~~rAl~kLr~ 306 (317)
T PRK07405 278 TLAKIGERLNISRERVRQIEREALSKLRK 306 (317)
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999985
No 367
>PRK07921 RNA polymerase sigma factor SigB; Reviewed
Probab=23.81 E-value=2.2e+02 Score=31.39 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=35.8
Q ss_pred hHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 004888 460 HAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFD 527 (725)
Q Consensus 460 ~~~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~e~~~~~l~~~r~kL~~ 527 (725)
+..++..+||+..+.. .+.+++++.+|++.+.+.++-..+.+||..
T Consensus 267 Er~Vl~~rygl~~~~~----------------------~Tl~eIa~~lgvS~eRVrQIe~~Al~KLr~ 312 (324)
T PRK07921 267 EQQVIRLRFGLDDGQP----------------------RTLDQIGKLFGLSRERVRQIEREVMSKLRN 312 (324)
T ss_pred HHHHHHHHHhcCCCCC----------------------cCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 4667788898842211 135689999999999999999999999975
No 368
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=23.70 E-value=1.1e+02 Score=23.90 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=22.2
Q ss_pred chHHHHhcCCCHHHHHHHHHHHHHHH
Q 004888 500 SSASASKLGMPLEKYLNILGECRRKL 525 (725)
Q Consensus 500 ~~~~a~~~g~~~e~~~~~l~~~r~kL 525 (725)
..++|+.+|+++..+...+..++++|
T Consensus 29 ~~eIa~~l~~s~~~v~~~l~ra~~~L 54 (54)
T PF08281_consen 29 YAEIAEILGISESTVKRRLRRARKKL 54 (54)
T ss_dssp HHHHHHHCTS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhhC
Confidence 46899999999999999999998876
No 369
>PLN02710 farnesyltranstransferase subunit beta
Probab=23.35 E-value=8.1e+02 Score=28.39 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhccCCCCceeee
Q 004888 404 ICRDILDYLRRDMIGPGGEIFSA 426 (725)
Q Consensus 404 vA~~~~~fl~~~m~~~~Ggfysa 426 (725)
..+.+++||.+ .+..+|||-..
T Consensus 192 ~~e~~~~~I~s-cQ~~dGGF~g~ 213 (439)
T PLN02710 192 LVKGVGDYILS-CQTYEGGIGGE 213 (439)
T ss_pred hHHHHHHHHHH-hCCCCCCCCCC
Confidence 35789999997 67789999653
No 370
>PLN02420 endoglucanase
Probab=23.32 E-value=1.3e+03 Score=27.40 Aligned_cols=146 Identities=10% Similarity=0.008 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC--CCC------
Q 004888 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA--PGF------ 618 (725)
Q Consensus 547 al~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~--~~~------ 618 (725)
|..++.|+.++..+++. .+-.| ..+.+|+.++=..+|+++.... .+.+++...+|..+. ++.
T Consensus 103 a~t~~~L~w~~~ef~d~-------~~~~g-~~~d~Ldeikw~lD~llk~~~~--~~~~~~qvGdg~~DH~~w~~Pe~~~~ 172 (525)
T PLN02420 103 AFTVTMLSWSVIEYGDQ-------LASTG-ELSHALEAIKWGTDYFIKAHTS--PNVLWAEVGDGDTDHYCWQRPEDMTT 172 (525)
T ss_pred HHHHHHHHHHHHHHHHh-------hhhcC-CcHHHHHHHHHHHHHHHHhCcC--CCceEEeeCCCCcccccccChhhccc
Confidence 55566666666655542 11112 1478999999999999877533 456665543331100 000
Q ss_pred ------------cch-HHHHHHHHHHHHHHcC--CHH----HHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccc
Q 004888 619 ------------LDD-YAFLISGLLDLYEFGS--GTK----WLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVK 679 (725)
Q Consensus 619 ------------leD-yA~li~aLL~LYe~Tg--d~~----yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k 679 (725)
..| -+.++.+|...+.+-. |+. .|+.|+++++.... ..|.| ..+...
T Consensus 173 ~R~~~~i~~~~pgsd~aa~~AAALA~AS~vfk~~D~~YA~~~L~~Ak~ly~fA~~-----~~g~y-~~~~~~-------- 238 (525)
T PLN02420 173 SRRAFKIDENNPGSDIAGETAAAMAAASIVFRSTNPHYSHLLLHHAQQLFEFGDK-----YRGKY-DESLKV-------- 238 (525)
T ss_pred cCceEEecCCCCccHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHh-----cCCcc-CCCCcc--------
Confidence 123 2445555666666655 444 58888888877654 12333 111000
Q ss_pred cCCCCCCCC---hHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 004888 680 EDHDGAEPS---GNSVSVINLVRLASIVAGSKSDYYRQNAEHSLY 721 (725)
Q Consensus 680 ~~~D~a~PS---~Nsv~a~~LlrL~~~t~~~~~~~y~~~A~~~l~ 721 (725)
..+...| -.--++-+-..|+..||+ ..|.+.+.+...
T Consensus 239 --~~g~Y~s~s~y~DEl~WAAawLY~ATgd---~~Yl~~a~~~~~ 278 (525)
T PLN02420 239 --VKSYYASVSGYMDELLWGATWLYRATDN---EHYMSYVVDMAH 278 (525)
T ss_pred --cCCCCCCcCcccHHHHHHHHHHHHHhCC---HHHHHHHHHHHH
Confidence 0011111 123566777889999997 689988866443
No 371
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=22.80 E-value=1.2e+02 Score=28.94 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=25.3
Q ss_pred EEEeccCChhhHhhhhhccCCHHHHHHHhcC-cEEEEEcCCCCcchHHHHHHHHH
Q 004888 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQ 196 (725)
Q Consensus 143 l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~-FV~VkvD~ee~pd~~~~y~~~~q 196 (725)
..++.++|.+|++.. ++|.++ .-+..+|..+.|.-.......++
T Consensus 3 ~iY~~~~C~~crkA~----------~~L~~~~i~~~~~d~~~~~~s~~eL~~~l~ 47 (132)
T PRK13344 3 KIYTISSCTSCKKAK----------TWLNAHQLSYKEQNLGKEPLTKEEILAILT 47 (132)
T ss_pred EEEeCCCCHHHHHHH----------HHHHHcCCCeEEEECCCCCCCHHHHHHHHH
Confidence 356889999999854 456543 33444566554433334434443
No 372
>PRK07598 RNA polymerase sigma factor SigC; Validated
Probab=22.34 E-value=2e+02 Score=33.06 Aligned_cols=55 Identities=13% Similarity=0.166 Sum_probs=40.6
Q ss_pred HHHHHhh----hhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 004888 452 EVEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFD 527 (725)
Q Consensus 452 Ei~~~lg----~~~~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~e~~~~~l~~~r~kL~~ 527 (725)
+|..++. .+..++.-.|++..+.. .+.+++++.+|++.+.+++++..++.||++
T Consensus 343 ~L~~~L~~L~~reR~VI~LRygl~d~~~----------------------~Tl~EIA~~LGvS~erVRqie~rAl~KLR~ 400 (415)
T PRK07598 343 DLQHLLADLTSRERDVIRMRFGLADGHT----------------------YSLAEIGRALDLSRERVRQIESKALQKLRQ 400 (415)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhcCCCCC----------------------CCHHHHHHHHCcCHHHHHHHHHHHHHHHhc
Confidence 3555554 24567777788754322 135689999999999999999999999985
Q ss_pred h
Q 004888 528 V 528 (725)
Q Consensus 528 ~ 528 (725)
.
T Consensus 401 ~ 401 (415)
T PRK07598 401 P 401 (415)
T ss_pred h
Confidence 4
No 373
>PLN02567 alpha,alpha-trehalase
Probab=21.73 E-value=1.8e+02 Score=34.60 Aligned_cols=103 Identities=12% Similarity=0.092 Sum_probs=61.0
Q ss_pred hhcHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCC----
Q 004888 543 VSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSK---- 614 (725)
Q Consensus 543 tsWNal~I~---aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s-~~~g~~~---- 614 (725)
+.-|+++.. .|++.++.+|+... ..+|.+.|.+..+.|.+.+||++.|.++.- .+.+...
T Consensus 328 VDLNa~L~~~e~~LA~la~~lG~~~~------------a~~~~~~A~~~~~aI~~~lWdee~G~y~Dydl~~~~~~~~~~ 395 (554)
T PLN02567 328 VDLNAFLLKMELDIAFFAKLLGDKAT------------AERFLKAAKARKRAINAVLWNEEMGQWLDYWLPPNGATCQES 395 (554)
T ss_pred ccHHHHHHHHHHHHHHHHHHhCChHH------------HHHHHHHHHHHHHHHHHHhcCcccCeEEeecccccccccccc
Confidence 567888855 58888888887321 257899999999999999999988866543 2233211
Q ss_pred --CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-Hccc
Q 004888 615 --APGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDE-LFLD 658 (725)
Q Consensus 615 --~~~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~-~F~D 658 (725)
+....---.+.+.+++=|+-=.-+++ -..|..+.+.+.+ .++.
T Consensus 396 ~~~~~~~~~~~~~~s~f~PLw~g~~~~~-~~~a~~v~~~l~~~~l~~ 441 (554)
T PLN02567 396 YTWDAENQNTNVYASNFVPLWCGVVPPG-DAKVEKVVESLKSSGLVL 441 (554)
T ss_pred ccccccccccCccHHHHHHHHcCCCChh-hHHHHHHHHHHHhccCcc
Confidence 00000001333567777764222221 1246667776653 4443
No 374
>TIGR02997 Sig70-cyanoRpoD RNA polymerase sigma factor, cyanobacterial RpoD-like family. This family includes a number of closely related sigma-70 (TIGR02937) factors in the cyanobacteria. All appear most closely related to the essential sigma-70 factor RpoD, and some score above trusted to the RpoD C-terminal domain model (TIGR02393).
Probab=21.50 E-value=2.1e+02 Score=30.89 Aligned_cols=51 Identities=18% Similarity=0.235 Sum_probs=37.6
Q ss_pred HHHHhh----hhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHH
Q 004888 453 VEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKL 525 (725)
Q Consensus 453 i~~~lg----~~~~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~e~~~~~l~~~r~kL 525 (725)
+.+++. .+..++...||+.... + .+.+++|+.+|++.+.+++++..+++||
T Consensus 243 L~~~L~~L~~rer~Vi~lr~gl~~~~---------------~-------~Tl~EIa~~lgiS~erVrq~~~rAl~kL 297 (298)
T TIGR02997 243 LESLLAELTPRERQVLRLRFGLDGGE---------------P-------LTLAEIGRRLNLSRERVRQIEAKALRKL 297 (298)
T ss_pred HHHHHHcCCHHHHHHHHHHhccCCCC---------------C-------cCHHHHHHHHCcCHHHHHHHHHHHHHHc
Confidence 455543 3466788888884211 1 2357899999999999999999999887
No 375
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=20.92 E-value=1.9e+02 Score=30.89 Aligned_cols=55 Identities=16% Similarity=0.174 Sum_probs=39.2
Q ss_pred chHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCCCCCCcchhhhcHHHHHHHHHHHHHHhhh
Q 004888 500 SSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKS 562 (725)
Q Consensus 500 ~~~~a~~~g~~~e~~~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal~I~aLa~A~~vl~d 562 (725)
.+++|+.+|+++..+...+..+|++|.+.+.. ..+ +. .=+.-++.++..|..- ||
T Consensus 127 ~~EIA~~lg~s~~tVr~~l~RAr~~Lr~~~~~-~~~--~~----~~~~~~~~~f~~a~~~-gD 181 (281)
T TIGR02957 127 YEEIASIVGKSEANCRQLVSRARRHLDARRPR-FEV--SR----EESRQLLERFVEAAQT-GD 181 (281)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCC-CCC--Ch----HHHHHHHHHHHHHHHh-CC
Confidence 46899999999999999999999999875432 111 21 1235667777777753 44
No 376
>PF08765 Mor: Mor transcription activator family; InterPro: IPR014875 Mor (Middle operon regulator) is a sequence specific DNA binding protein. It mediates transcription activation through its interactions with the C-terminal domains of the alpha and sigma subunits of bacterial RNA polymerase. The N-terminal region of Mor is the dimerisation region, and the C-terminal contains a helix-turn-helix motif which binds DNA []. ; PDB: 1RR7_A.
Probab=20.61 E-value=86 Score=28.75 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=19.0
Q ss_pred hHHHHhcCCCHHHHHHHHHHHHHHHHhhh
Q 004888 501 SASASKLGMPLEKYLNILGECRRKLFDVR 529 (725)
Q Consensus 501 ~~~a~~~g~~~e~~~~~l~~~r~kL~~~R 529 (725)
.++|..||++...+.++|+..+.+....+
T Consensus 76 ~eLA~kyglS~r~I~~Ii~~~~~~~~~~~ 104 (108)
T PF08765_consen 76 RELARKYGLSERQIYRIIKRVRRRERRRR 104 (108)
T ss_dssp HHHHHHHT--HHHHHHHHHHHHH------
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHhh
Confidence 57999999999999999998887765433
No 377
>PF07319 DnaI_N: Primosomal protein DnaI N-terminus; InterPro: IPR009928 This entry represents the N terminus (approximately 120 residues) of bacterial primosomal DnaI proteins, although one family member appears to be of viral origin. DnaI is one of the components of the Bacillus subtilis replication restart primosome, and is required for the DnaB75-dependent loading of the DnaC helicase [].; PDB: 2K7R_A.
Probab=20.22 E-value=63 Score=28.98 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=16.3
Q ss_pred HhhhhhccCCHHHHHHHhcC
Q 004888 154 HVMEVESFEDEGVAKLLNDW 173 (725)
Q Consensus 154 ~~Me~e~f~d~eVa~~ln~~ 173 (725)
..|.+++++||+|+++|++|
T Consensus 22 ~~l~~~vl~dp~V~~Fl~~h 41 (94)
T PF07319_consen 22 EQLKQEVLSDPEVQAFLQEH 41 (94)
T ss_dssp HHHHHHHTT-HHHHHHHHHS
T ss_pred HHHHHHHHcCHHHHHHHHHh
Confidence 45678999999999999965
No 378
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=20.22 E-value=1.9e+02 Score=29.64 Aligned_cols=50 Identities=22% Similarity=0.333 Sum_probs=36.6
Q ss_pred hhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 004888 459 EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFD 527 (725)
Q Consensus 459 ~~~~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~e~~~~~l~~~r~kL~~ 527 (725)
.+.++++..|.. |++|. | ...+..++|+.+|++...+.+.|..+-+||..
T Consensus 159 rQ~~vL~~A~~~---GYFd~-----P-----------R~~~l~dLA~~lGISkst~~ehLRrAe~Kl~~ 208 (215)
T COG3413 159 RQLEVLRLAYKM---GYFDY-----P-----------RRVSLKDLAKELGISKSTLSEHLRRAERKLIE 208 (215)
T ss_pred HHHHHHHHHHHc---CCCCC-----C-----------ccCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 455566666655 77652 2 12345789999999999999999999999874
No 379
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=20.21 E-value=1.5e+02 Score=24.05 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=24.7
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHH
Q 004888 499 DSSASASKLGMPLEKYLNILGECRRKLF 526 (725)
Q Consensus 499 ~~~~~a~~~g~~~e~~~~~l~~~r~kL~ 526 (725)
+.+++|+.+|++...+.+.|..+-+||+
T Consensus 25 tl~elA~~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 25 TLEELAEELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999988875
Done!