Query 004888
Match_columns 725
No_of_seqs 386 out of 1933
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 08:53:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004888.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004888hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ira_A Conserved protein; meth 100.0 1.5E-44 5E-49 355.9 16.7 168 101-268 2-169 (173)
2 1fp3_A N-acyl-D-glucosamine 2- 100.0 1E-34 3.4E-39 319.3 22.9 338 285-701 19-394 (402)
3 2gz6_A N-acetyl-D-glucosamine 100.0 4.5E-34 1.5E-38 311.9 20.1 338 338-700 13-383 (388)
4 2zbl_A Putative isomerase; N-a 100.0 1.8E-30 6E-35 288.2 23.4 298 287-724 19-349 (421)
5 3gt5_A N-acetylglucosamine 2-e 100.0 1.2E-28 4.1E-33 272.0 20.1 342 338-701 12-390 (402)
6 1fp3_A N-acyl-D-glucosamine 2- 99.9 1.6E-24 5.5E-29 238.0 23.6 302 341-723 19-346 (402)
7 2dlx_A UBX domain-containing p 99.9 1.1E-23 3.8E-28 203.2 13.6 126 100-244 10-137 (153)
8 2zbl_A Putative isomerase; N-a 99.9 6.6E-22 2.3E-26 219.4 21.7 245 353-723 27-285 (421)
9 2zzr_A Unsaturated glucuronyl 99.9 3.1E-21 1.1E-25 212.1 19.6 212 382-724 115-343 (397)
10 2ahf_A Unsaturated glucuronyl 99.8 1.2E-19 4E-24 198.6 18.7 152 547-724 151-318 (377)
11 3ph9_A Anterior gradient prote 99.8 3.5E-20 1.2E-24 178.3 11.3 122 118-248 24-147 (151)
12 3gt5_A N-acetylglucosamine 2-e 99.8 6.5E-19 2.2E-23 194.2 16.6 153 545-724 53-206 (402)
13 2gz6_A N-acetyl-D-glucosamine 99.8 5.6E-18 1.9E-22 184.6 17.3 247 403-723 15-270 (388)
14 3f9u_A Putative exported cytoc 99.7 5.2E-18 1.8E-22 163.8 12.4 127 117-248 26-171 (172)
15 3k7x_A LIN0763 protein; Q92DQ0 99.7 4.6E-16 1.6E-20 168.8 27.0 240 315-722 52-297 (349)
16 2ju5_A Thioredoxin disulfide i 99.7 9.9E-18 3.4E-22 160.1 9.7 138 98-241 8-150 (154)
17 3fk8_A Disulphide isomerase; A 99.6 5.8E-15 2E-19 136.0 8.8 110 124-242 15-132 (133)
18 2lst_A Thioredoxin; structural 99.2 1.6E-15 5.4E-20 139.1 0.0 108 120-242 2-115 (130)
19 2kuc_A Putative disulphide-iso 99.5 1.1E-13 3.6E-18 126.7 9.2 92 120-219 8-102 (130)
20 3h7l_A Endoglucanase; dehydrog 99.5 3.9E-13 1.3E-17 153.7 15.3 145 544-722 250-394 (586)
21 3k7x_A LIN0763 protein; Q92DQ0 99.4 5.8E-12 2E-16 136.6 19.3 148 547-723 95-245 (349)
22 2fwh_A Thiol:disulfide interch 99.4 3E-13 1E-17 125.5 6.9 103 127-242 22-127 (134)
23 2ahf_A Unsaturated glucuronyl 99.3 6.2E-11 2.1E-15 129.7 21.7 252 334-703 106-367 (377)
24 2zzr_A Unsaturated glucuronyl 99.3 3.8E-11 1.3E-15 132.0 19.0 211 334-658 132-348 (397)
25 1sen_A Thioredoxin-like protei 99.3 7.2E-12 2.5E-16 120.9 10.4 91 118-219 27-119 (164)
26 3dml_A Putative uncharacterize 99.3 1.3E-12 4.4E-17 120.2 3.9 91 138-244 18-111 (116)
27 3pmm_A Putative cytoplasmic pr 99.2 5E-11 1.7E-15 130.7 15.2 171 507-722 20-201 (382)
28 2ec4_A FAS-associated factor 1 99.2 2.1E-11 7.1E-16 120.2 9.9 122 119-247 31-172 (178)
29 3hxs_A Thioredoxin, TRXP; elec 99.2 2.8E-11 9.6E-16 112.2 8.8 88 137-241 50-137 (141)
30 1ep7_A Thioredoxin CH1, H-type 99.2 2.4E-11 8.1E-16 107.7 8.0 85 123-219 9-93 (112)
31 1ti3_A Thioredoxin H, PTTRXH1; 99.2 4.4E-11 1.5E-15 105.9 8.5 103 121-242 9-111 (113)
32 3gnj_A Thioredoxin domain prot 99.2 6.9E-11 2.4E-15 104.3 9.4 99 125-241 8-108 (111)
33 2l57_A Uncharacterized protein 99.2 2.2E-11 7.4E-16 110.9 5.9 76 133-219 21-98 (126)
34 3f3q_A Thioredoxin-1; His TAG, 99.2 7.8E-11 2.7E-15 105.1 8.9 79 128-219 14-92 (109)
35 1nc5_A Hypothetical protein YT 99.1 1.4E-09 4.7E-14 118.7 20.4 255 310-723 42-311 (373)
36 2l5l_A Thioredoxin; structural 99.1 5.8E-11 2E-15 110.1 8.0 72 136-218 36-107 (136)
37 1nsw_A Thioredoxin, TRX; therm 99.1 2E-11 6.8E-16 106.9 4.6 79 129-219 8-86 (105)
38 3zzx_A Thioredoxin; oxidoreduc 99.1 5.7E-11 2E-15 106.6 7.6 71 136-219 18-88 (105)
39 3k11_A Putative glycosyl hydro 99.1 9.6E-11 3.3E-15 130.5 10.8 198 490-722 9-235 (445)
40 1dby_A Chloroplast thioredoxin 99.1 1.3E-10 4.3E-15 102.1 9.2 96 128-241 8-105 (107)
41 3tco_A Thioredoxin (TRXA-1); d 99.1 4.6E-11 1.6E-15 104.7 6.2 96 128-241 11-107 (109)
42 3qfa_C Thioredoxin; protein-pr 99.1 1.7E-10 5.7E-15 104.2 9.8 77 128-219 19-99 (116)
43 1xfl_A Thioredoxin H1; AT3G510 99.1 8.1E-11 2.8E-15 107.8 7.8 84 123-219 23-106 (124)
44 3k11_A Putative glycosyl hydro 99.1 1.9E-09 6.5E-14 120.1 20.2 265 309-724 82-362 (445)
45 2voc_A Thioredoxin; electron t 99.1 6.7E-11 2.3E-15 105.7 6.6 77 130-219 10-86 (112)
46 2vm1_A Thioredoxin, thioredoxi 99.1 1.1E-10 3.6E-15 104.2 7.8 86 121-219 11-96 (118)
47 1wmj_A Thioredoxin H-type; str 99.1 9E-11 3.1E-15 106.7 7.4 86 121-219 19-104 (130)
48 2trx_A Thioredoxin; electron t 99.1 1E-10 3.6E-15 102.8 7.5 75 133-219 15-89 (108)
49 1w4v_A Thioredoxin, mitochondr 99.1 1.4E-10 4.9E-15 104.9 8.4 80 128-219 20-100 (119)
50 2dml_A Protein disulfide-isome 99.1 2.7E-10 9.2E-15 103.9 10.3 73 134-217 31-103 (130)
51 3d22_A TRXH4, thioredoxin H-ty 99.1 1.3E-10 4.5E-15 107.5 7.4 86 121-219 29-114 (139)
52 2av4_A Thioredoxin-like protei 99.1 1.4E-10 4.7E-15 111.8 7.6 78 128-217 29-108 (160)
53 1syr_A Thioredoxin; SGPP, stru 99.1 1.2E-10 4.3E-15 103.8 6.8 91 116-219 4-94 (112)
54 2vlu_A Thioredoxin, thioredoxi 99.1 2.2E-10 7.4E-15 103.3 8.3 80 127-219 23-102 (122)
55 3hz4_A Thioredoxin; NYSGXRC, P 99.1 2.3E-10 7.8E-15 106.7 8.7 80 128-219 13-93 (140)
56 2i4a_A Thioredoxin; acidophIle 99.1 1.7E-10 5.9E-15 100.9 7.1 73 135-219 17-89 (107)
57 3pmm_A Putative cytoplasmic pr 99.1 1.5E-08 5E-13 111.2 24.0 284 334-724 24-330 (382)
58 2yzu_A Thioredoxin; redox prot 99.1 1E-10 3.4E-15 102.3 5.3 79 129-219 9-87 (109)
59 1oaz_A Thioredoxin 1; immune s 99.1 3.8E-11 1.3E-15 110.1 2.6 78 133-219 16-104 (123)
60 4euy_A Uncharacterized protein 99.1 5.1E-11 1.7E-15 105.1 3.1 77 130-219 10-86 (105)
61 1t00_A Thioredoxin, TRX; redox 99.1 2.1E-10 7.1E-15 101.7 7.0 76 132-219 17-92 (112)
62 3ul3_B Thioredoxin, thioredoxi 99.0 9.9E-11 3.4E-15 107.3 5.0 78 130-219 34-111 (128)
63 3d6i_A Monothiol glutaredoxin- 99.0 4.4E-10 1.5E-14 99.8 9.1 72 136-219 19-91 (112)
64 1fb6_A Thioredoxin M; electron 99.0 2.4E-10 8.2E-15 99.6 7.2 89 134-240 14-103 (105)
65 3die_A Thioredoxin, TRX; elect 99.0 1.6E-10 5.5E-15 100.9 5.9 78 129-219 11-88 (106)
66 3aps_A DNAJ homolog subfamily 99.0 3E-10 1E-14 102.4 7.8 78 128-216 10-88 (122)
67 2f51_A Thioredoxin; electron t 99.0 3E-10 1E-14 103.0 7.4 80 128-219 12-95 (118)
68 2dj1_A Protein disulfide-isome 99.0 2.5E-10 8.7E-15 105.4 7.0 77 128-216 24-103 (140)
69 3gix_A Thioredoxin-like protei 99.0 3.1E-10 1.1E-14 107.8 7.6 78 128-217 11-90 (149)
70 1nc5_A Hypothetical protein YT 99.0 9E-10 3.1E-14 120.2 12.2 137 542-723 36-175 (373)
71 1gh2_A Thioredoxin-like protei 99.0 5.3E-10 1.8E-14 98.6 8.3 71 136-219 19-89 (107)
72 1x5d_A Protein disulfide-isome 99.0 6.7E-10 2.3E-14 101.3 9.2 73 134-218 21-97 (133)
73 3m9j_A Thioredoxin; oxidoreduc 99.0 5.1E-10 1.7E-14 97.7 8.0 70 137-219 19-88 (105)
74 2oe3_A Thioredoxin-3; electron 99.0 2.5E-10 8.5E-15 103.0 6.1 79 128-219 20-98 (114)
75 2o8v_B Thioredoxin 1; disulfid 99.0 2.5E-10 8.5E-15 105.2 6.2 74 134-219 36-109 (128)
76 2ppt_A Thioredoxin-2; thiredox 99.0 6.3E-10 2.2E-14 106.2 8.8 80 128-219 54-133 (155)
77 3p2a_A Thioredoxin 2, putative 99.0 5.7E-10 1.9E-14 104.6 8.2 80 128-219 45-124 (148)
78 2j23_A Thioredoxin; immune pro 99.0 3.9E-10 1.3E-14 102.4 6.8 80 128-219 23-103 (121)
79 2wz9_A Glutaredoxin-3; protein 99.0 5.9E-10 2E-14 105.6 8.3 79 128-219 20-100 (153)
80 2xc2_A Thioredoxinn; oxidoredu 99.0 5.7E-10 1.9E-14 100.1 7.7 69 136-219 31-100 (117)
81 1r26_A Thioredoxin; redox-acti 99.0 7.8E-10 2.7E-14 101.7 8.7 78 129-219 28-105 (125)
82 2e0q_A Thioredoxin; electron t 99.0 3.5E-10 1.2E-14 97.8 6.0 78 129-219 7-84 (104)
83 1thx_A Thioredoxin, thioredoxi 99.0 5.6E-10 1.9E-14 98.8 7.3 73 135-219 22-94 (115)
84 1xwb_A Thioredoxin; dimerizati 99.0 7.1E-10 2.4E-14 96.7 7.6 71 137-219 19-89 (106)
85 2i1u_A Thioredoxin, TRX, MPT46 99.0 3E-10 1E-14 101.9 4.8 78 130-219 22-99 (121)
86 1mek_A Protein disulfide isome 99.0 7.1E-10 2.4E-14 98.6 6.6 77 129-217 15-94 (120)
87 1qgv_A Spliceosomal protein U5 99.0 9.5E-10 3.3E-14 103.5 7.7 79 128-218 11-91 (142)
88 2vim_A Thioredoxin, TRX; thior 99.0 1.5E-09 5.1E-14 94.3 8.4 78 129-219 8-87 (104)
89 3cxg_A Putative thioredoxin; m 98.9 5.6E-10 1.9E-14 103.6 5.7 69 136-218 38-110 (133)
90 2dj3_A Protein disulfide-isome 98.9 1.3E-09 4.5E-14 99.7 7.8 69 136-215 23-93 (133)
91 2l6c_A Thioredoxin; oxidoreduc 98.9 8.6E-10 2.9E-14 98.4 6.0 78 133-225 14-94 (110)
92 3apq_A DNAJ homolog subfamily 98.9 2.2E-09 7.6E-14 107.0 9.6 80 128-219 104-183 (210)
93 3qou_A Protein YBBN; thioredox 98.9 1.5E-09 5.2E-14 112.7 7.9 72 136-219 24-95 (287)
94 3h79_A Thioredoxin-like protei 98.9 3E-09 1E-13 97.1 8.7 70 136-216 31-105 (127)
95 2pu9_C TRX-F, thioredoxin F-ty 98.9 3E-09 1E-13 94.3 8.5 70 137-219 23-93 (111)
96 3uvt_A Thioredoxin domain-cont 98.9 3.2E-09 1.1E-13 93.3 7.9 67 138-219 21-93 (111)
97 2dj0_A Thioredoxin-related tra 98.9 3.5E-09 1.2E-13 98.0 8.3 81 134-226 22-110 (137)
98 3dxb_A Thioredoxin N-terminall 98.9 1.9E-09 6.4E-14 108.7 6.9 80 128-219 19-99 (222)
99 1zma_A Bacterocin transport ac 98.8 8E-10 2.7E-14 99.4 2.7 85 127-219 18-102 (118)
100 2yj7_A LPBCA thioredoxin; oxid 98.3 3.3E-10 1.1E-14 98.3 0.0 75 133-219 14-88 (106)
101 2qsi_A Putative hydrogenase ex 98.8 2.1E-09 7.1E-14 101.5 5.3 96 118-225 12-111 (137)
102 1faa_A Thioredoxin F; electron 98.8 6.5E-09 2.2E-13 94.0 8.4 71 136-219 35-106 (124)
103 3hcz_A Possible thiol-disulfid 98.8 4.5E-09 1.5E-13 96.8 7.1 99 136-245 29-145 (148)
104 2qgv_A Hydrogenase-1 operon pr 98.8 3.1E-09 1E-13 100.7 5.1 102 109-224 7-112 (140)
105 1z6n_A Hypothetical protein PA 98.8 4.4E-09 1.5E-13 102.3 6.4 93 136-246 52-146 (167)
106 2djj_A PDI, protein disulfide- 98.8 1.1E-08 3.6E-13 91.9 8.0 68 135-216 22-94 (121)
107 1v98_A Thioredoxin; oxidoreduc 98.8 6.7E-09 2.3E-13 96.3 6.8 80 128-219 40-119 (140)
108 1x5e_A Thioredoxin domain cont 98.8 8.2E-09 2.8E-13 93.7 6.8 66 139-216 23-89 (126)
109 2b1k_A Thiol:disulfide interch 98.8 9.4E-09 3.2E-13 97.7 7.3 96 136-243 49-160 (168)
110 1lu4_A Soluble secreted antige 98.8 1.4E-08 4.8E-13 92.1 7.8 80 134-217 20-113 (136)
111 3emx_A Thioredoxin; structural 98.8 7.3E-09 2.5E-13 96.0 6.1 87 128-224 23-113 (135)
112 3ewl_A Uncharacterized conserv 98.7 6.5E-09 2.2E-13 95.8 5.5 84 136-219 25-125 (142)
113 2b5x_A YKUV protein, TRXY; thi 98.7 2.2E-08 7.4E-13 92.0 8.6 85 132-219 23-126 (148)
114 3raz_A Thioredoxin-related pro 98.7 2.1E-08 7.3E-13 93.7 8.6 79 134-219 20-121 (151)
115 4evm_A Thioredoxin family prot 98.7 9.5E-09 3.3E-13 92.5 5.8 81 136-219 20-120 (138)
116 1fo5_A Thioredoxin; disulfide 98.7 9.9E-09 3.4E-13 86.0 5.5 64 139-216 3-66 (85)
117 3or5_A Thiol:disulfide interch 98.7 2.3E-08 7.7E-13 94.1 8.2 81 136-219 32-132 (165)
118 2lja_A Putative thiol-disulfid 98.7 5.4E-08 1.9E-12 90.4 10.7 81 136-219 28-124 (152)
119 3idv_A Protein disulfide-isome 98.7 1.3E-08 4.3E-13 102.2 6.7 78 128-217 22-102 (241)
120 1nho_A Probable thioredoxin; b 98.7 1.5E-08 5E-13 85.0 6.0 63 140-216 3-65 (85)
121 1wou_A Thioredoxin -related pr 98.7 2.5E-08 8.4E-13 90.9 7.6 80 128-219 12-107 (123)
122 1zzo_A RV1677; thioredoxin fol 98.7 3.7E-08 1.3E-12 89.0 8.7 80 134-217 21-115 (136)
123 2f9s_A Thiol-disulfide oxidore 98.7 4E-08 1.4E-12 91.5 9.0 82 135-219 23-119 (151)
124 2lrn_A Thiol:disulfide interch 98.7 9.4E-08 3.2E-12 89.4 10.5 80 137-219 28-125 (152)
125 3erw_A Sporulation thiol-disul 98.7 1.9E-08 6.4E-13 92.1 5.6 80 137-219 33-130 (145)
126 3kh7_A Thiol:disulfide interch 98.6 4.7E-08 1.6E-12 94.6 8.5 98 134-243 54-167 (176)
127 3fkf_A Thiol-disulfide oxidore 98.6 4E-08 1.4E-12 90.4 7.6 81 137-220 32-131 (148)
128 1a8l_A Protein disulfide oxido 98.6 3.1E-08 1.1E-12 98.8 7.4 80 127-218 122-206 (226)
129 3gl3_A Putative thiol:disulfid 98.6 7.7E-08 2.6E-12 89.4 9.5 89 134-225 24-128 (152)
130 1kng_A Thiol:disulfide interch 98.6 7.9E-08 2.7E-12 89.5 9.4 80 134-219 38-133 (156)
131 2h30_A Thioredoxin, peptide me 98.6 7.9E-09 2.7E-13 97.4 2.5 73 133-219 33-137 (164)
132 3hdc_A Thioredoxin family prot 98.6 7E-08 2.4E-12 91.0 8.6 81 135-226 38-139 (158)
133 3kcm_A Thioredoxin family prot 98.6 8.4E-08 2.9E-12 89.3 8.8 102 135-243 25-143 (154)
134 3ha9_A Uncharacterized thiored 98.6 7.5E-08 2.6E-12 91.2 8.4 94 136-241 35-162 (165)
135 3kp8_A Vkorc1/thioredoxin doma 98.6 1.8E-08 6.3E-13 90.4 3.3 72 128-217 2-77 (106)
136 3eur_A Uncharacterized protein 98.6 5.9E-08 2E-12 89.7 6.9 84 137-220 30-130 (142)
137 3eyt_A Uncharacterized protein 98.6 1.5E-07 5.2E-12 88.1 9.3 82 135-219 25-133 (158)
138 3lor_A Thiol-disulfide isomera 98.6 9.9E-08 3.4E-12 89.4 7.9 83 134-219 26-136 (160)
139 2dbc_A PDCL2, unnamed protein 98.6 2.2E-07 7.4E-12 86.3 9.8 67 137-219 29-95 (135)
140 1i5g_A Tryparedoxin II; electr 98.5 1.9E-07 6.6E-12 86.3 9.2 83 134-219 24-125 (144)
141 3s9f_A Tryparedoxin; thioredox 98.5 1.2E-07 4.2E-12 90.8 7.7 83 134-219 44-145 (165)
142 2ls5_A Uncharacterized protein 97.9 1.1E-08 3.6E-13 96.5 0.0 108 129-244 24-149 (159)
143 2es7_A Q8ZP25_salty, putative 98.5 2E-08 6.9E-13 95.0 1.8 76 129-219 25-106 (142)
144 3idv_A Protein disulfide-isome 98.5 1.3E-07 4.6E-12 94.7 7.7 78 129-218 138-218 (241)
145 3q6o_A Sulfhydryl oxidase 1; p 98.5 1.7E-07 5.8E-12 95.3 8.6 71 134-215 26-101 (244)
146 1o8x_A Tryparedoxin, TRYX, TXN 98.5 3.2E-07 1.1E-11 85.1 9.3 82 134-219 24-125 (146)
147 2l5o_A Putative thioredoxin; s 98.5 3.2E-07 1.1E-11 85.2 9.3 81 136-219 26-122 (153)
148 3lwa_A Secreted thiol-disulfid 98.5 2.1E-07 7.1E-12 89.9 8.2 83 134-219 55-162 (183)
149 1o73_A Tryparedoxin; electron 98.5 3.4E-07 1.2E-11 84.3 9.2 81 135-219 25-125 (144)
150 3ed3_A Protein disulfide-isome 98.5 3.3E-07 1.1E-11 96.9 10.1 85 119-214 15-102 (298)
151 1ilo_A Conserved hypothetical 98.5 1.7E-07 5.9E-12 77.3 5.9 65 141-223 2-66 (77)
152 3fw2_A Thiol-disulfide oxidore 98.5 6.2E-07 2.1E-11 83.5 10.1 80 137-219 32-132 (150)
153 2lrt_A Uncharacterized protein 98.4 4.4E-07 1.5E-11 85.4 8.9 80 137-219 34-129 (152)
154 3iv4_A Putative oxidoreductase 98.4 2.2E-07 7.6E-12 84.6 6.3 77 128-219 14-96 (112)
155 2ywm_A Glutaredoxin-like prote 98.4 3.3E-07 1.1E-11 91.8 7.8 74 128-216 125-199 (229)
156 2lus_A Thioredoxion; CR-Trp16, 97.8 2.9E-08 1E-12 91.1 0.0 83 136-221 23-126 (143)
157 3ia1_A THIO-disulfide isomeras 98.4 1.4E-07 4.9E-12 87.9 4.6 76 139-219 31-125 (154)
158 4fo5_A Thioredoxin-like protei 98.4 6.4E-07 2.2E-11 82.8 8.7 77 137-219 31-129 (143)
159 2r2j_A Thioredoxin domain-cont 98.4 3E-07 1E-11 100.0 7.5 76 130-217 14-95 (382)
160 1sji_A Calsequestrin 2, calseq 98.4 2.5E-07 8.7E-12 99.3 6.7 78 128-217 18-102 (350)
161 3f8u_A Protein disulfide-isome 98.4 2.7E-07 9.2E-12 102.9 6.6 70 134-215 366-437 (481)
162 3h7l_A Endoglucanase; dehydrog 98.4 6.9E-06 2.4E-10 94.1 17.8 185 334-654 189-397 (586)
163 2b5e_A Protein disulfide-isome 98.3 8.3E-07 2.8E-11 99.7 8.7 76 129-216 22-98 (504)
164 2cvb_A Probable thiol-disulfid 98.3 1.2E-06 4.1E-11 84.8 8.7 81 136-219 31-132 (188)
165 1jfu_A Thiol:disulfide interch 98.3 2.1E-06 7.2E-11 82.9 10.3 81 136-219 58-159 (186)
166 3ga4_A Dolichyl-diphosphooligo 98.3 1E-06 3.4E-11 86.7 7.7 71 136-217 35-117 (178)
167 1ttz_A Conserved hypothetical 98.3 8.4E-07 2.9E-11 77.1 6.1 58 142-218 3-60 (87)
168 2e7p_A Glutaredoxin; thioredox 98.3 9.4E-07 3.2E-11 78.9 6.7 76 129-219 11-86 (116)
169 2ywi_A Hypothetical conserved 98.3 1.9E-06 6.6E-11 83.7 9.3 80 137-219 44-146 (196)
170 1a0r_P Phosducin, MEKA, PP33; 98.3 5.3E-07 1.8E-11 93.0 5.0 69 137-219 132-200 (245)
171 2b5e_A Protein disulfide-isome 98.2 1.3E-06 4.3E-11 98.2 7.6 68 135-216 373-443 (504)
172 2rli_A SCO2 protein homolog, m 98.2 3.7E-06 1.3E-10 79.6 9.4 100 137-245 25-166 (171)
173 3t58_A Sulfhydryl oxidase 1; o 98.2 2.4E-06 8.3E-11 97.1 9.3 72 135-217 27-106 (519)
174 2hls_A Protein disulfide oxido 98.2 2.6E-06 9E-11 87.2 8.4 77 128-218 127-208 (243)
175 3qcp_A QSOX from trypanosoma b 98.2 1.4E-06 4.6E-11 97.8 6.7 69 136-215 40-116 (470)
176 2hyx_A Protein DIPZ; thioredox 98.2 2.6E-06 8.9E-11 92.3 8.1 83 134-219 78-180 (352)
177 3f8u_A Protein disulfide-isome 98.2 1.8E-06 6E-11 96.3 6.7 75 131-217 11-88 (481)
178 2vup_A Glutathione peroxidase- 98.1 6.8E-06 2.3E-10 80.2 9.9 80 137-219 47-166 (190)
179 3apo_A DNAJ homolog subfamily 98.1 2.6E-06 9E-11 100.8 8.1 79 128-218 664-743 (780)
180 3drn_A Peroxiredoxin, bacterio 98.1 8.4E-06 2.9E-10 77.2 9.8 79 137-219 27-126 (161)
181 3us3_A Calsequestrin-1; calciu 98.1 2.7E-06 9.4E-11 92.2 7.1 78 131-217 23-104 (367)
182 2ggt_A SCO1 protein homolog, m 98.1 4.8E-06 1.6E-10 78.1 7.9 80 137-219 22-142 (164)
183 3u5r_E Uncharacterized protein 98.1 7.7E-06 2.6E-10 81.9 9.8 81 137-220 57-160 (218)
184 2p5q_A Glutathione peroxidase 98.1 1E-05 3.6E-10 76.2 9.8 80 137-219 31-149 (170)
185 3cmi_A Peroxiredoxin HYR1; thi 98.1 5.1E-06 1.7E-10 79.4 7.3 79 137-219 31-149 (171)
186 2trc_P Phosducin, MEKA, PP33; 98.1 1.6E-06 5.3E-11 87.7 3.3 65 138-218 120-186 (217)
187 3evi_A Phosducin-like protein 98.0 2.6E-06 9E-11 78.0 4.3 66 138-219 23-88 (118)
188 2djk_A PDI, protein disulfide- 98.0 1E-05 3.5E-10 74.7 8.2 78 128-217 13-93 (133)
189 3uem_A Protein disulfide-isome 98.0 3.4E-06 1.2E-10 90.3 5.6 70 134-216 263-335 (361)
190 3apo_A DNAJ homolog subfamily 98.0 6.2E-06 2.1E-10 97.6 8.0 79 127-217 122-200 (780)
191 2v1m_A Glutathione peroxidase; 98.0 2.8E-05 9.4E-10 73.2 10.6 43 137-182 30-73 (169)
192 1xvw_A Hypothetical protein RV 98.0 1.3E-05 4.4E-10 75.2 8.2 94 137-242 34-156 (160)
193 3kij_A Probable glutathione pe 98.0 3.2E-05 1.1E-09 74.6 11.1 43 137-182 37-80 (180)
194 2bmx_A Alkyl hydroperoxidase C 98.0 1.6E-05 5.4E-10 77.9 8.7 79 137-219 44-147 (195)
195 2k6v_A Putative cytochrome C o 98.0 7.8E-06 2.7E-10 77.3 6.1 76 137-219 34-152 (172)
196 3dwv_A Glutathione peroxidase- 98.0 6.5E-06 2.2E-10 80.2 5.6 43 137-182 45-88 (187)
197 1we0_A Alkyl hydroperoxide red 97.9 2.1E-05 7.1E-10 76.3 8.7 79 137-219 30-134 (187)
198 2k8s_A Thioredoxin; dimer, str 97.9 8.9E-06 3E-10 68.3 4.6 61 142-219 4-68 (80)
199 2f8a_A Glutathione peroxidase 97.9 4.4E-05 1.5E-09 76.2 10.3 43 137-182 46-89 (208)
200 2fgx_A Putative thioredoxin; N 97.9 1.3E-05 4.4E-10 72.4 5.6 64 139-218 29-93 (107)
201 2p31_A CL683, glutathione pero 97.8 1.6E-05 5.5E-10 76.9 6.1 43 137-182 48-91 (181)
202 2jsy_A Probable thiol peroxida 97.8 4.7E-05 1.6E-09 72.0 9.1 78 137-219 43-143 (167)
203 1zof_A Alkyl hydroperoxide-red 97.8 2.7E-05 9.1E-10 76.4 7.2 79 137-219 32-138 (198)
204 1xvq_A Thiol peroxidase; thior 97.8 5.7E-05 1.9E-09 72.7 9.3 93 137-242 43-164 (175)
205 3e6u_A LANC-like protein 1; al 97.8 0.00076 2.6E-08 74.3 19.2 274 379-723 73-367 (411)
206 2obi_A PHGPX, GPX-4, phospholi 97.8 3.5E-05 1.2E-09 74.4 7.4 43 137-182 46-89 (183)
207 1wjk_A C330018D20RIK protein; 97.8 2E-05 6.9E-10 69.6 5.1 62 137-217 14-77 (100)
208 1zye_A Thioredoxin-dependent p 97.7 5.5E-05 1.9E-09 76.0 8.5 80 137-220 55-163 (220)
209 2h01_A 2-Cys peroxiredoxin; th 97.7 2.7E-05 9.2E-10 75.9 5.8 79 137-219 30-136 (192)
210 1a8l_A Protein disulfide oxido 97.7 4.9E-05 1.7E-09 75.5 7.7 67 137-216 21-90 (226)
211 2gs3_A PHGPX, GPX-4, phospholi 97.7 9.4E-05 3.2E-09 71.7 9.2 43 137-182 48-91 (185)
212 1uul_A Tryparedoxin peroxidase 97.7 8.2E-05 2.8E-09 73.2 8.8 79 137-219 35-142 (202)
213 2ywm_A Glutaredoxin-like prote 97.7 0.00014 4.6E-09 72.6 10.5 72 136-216 18-93 (229)
214 3kp9_A Vkorc1/thioredoxin doma 97.7 1E-05 3.5E-10 85.5 2.0 72 128-217 187-262 (291)
215 2c0g_A ERP29 homolog, windbeut 97.7 6.1E-05 2.1E-09 77.7 7.7 68 131-215 26-105 (248)
216 1xzo_A BSSCO, hypothetical pro 97.7 3.4E-05 1.2E-09 73.1 5.3 80 137-219 32-151 (174)
217 3ztl_A Thioredoxin peroxidase; 97.6 7.4E-05 2.5E-09 75.1 7.5 79 137-219 68-175 (222)
218 3gkn_A Bacterioferritin comigr 97.6 0.00027 9.1E-09 66.4 10.8 79 137-219 34-140 (163)
219 1qmv_A Human thioredoxin perox 97.6 0.00012 4.2E-09 71.6 8.1 79 137-219 33-140 (197)
220 1hyu_A AHPF, alkyl hydroperoxi 97.6 0.0001 3.5E-09 83.5 8.1 77 128-219 106-183 (521)
221 1eej_A Thiol:disulfide interch 97.5 0.00022 7.6E-09 71.3 9.4 24 136-159 84-107 (216)
222 2v8i_A Pectate lyase; periplas 97.5 0.022 7.6E-07 62.6 25.3 302 381-721 59-456 (543)
223 2i81_A 2-Cys peroxiredoxin; st 97.5 0.00018 6E-09 72.0 8.5 80 137-220 51-158 (213)
224 3gzk_A Cellulase; fold from GH 97.5 0.00085 2.9E-08 76.5 15.1 90 543-650 242-334 (537)
225 2ht9_A Glutaredoxin-2; thiored 97.4 0.00016 5.5E-09 68.5 6.5 76 128-219 39-115 (146)
226 4gqc_A Thiol peroxidase, perox 97.4 0.00015 5.3E-09 69.3 5.8 103 135-244 30-158 (164)
227 2b7k_A SCO1 protein; metalloch 97.4 0.00084 2.9E-08 66.0 11.2 21 137-157 40-61 (200)
228 2qc7_A ERP31, ERP28, endoplasm 97.4 0.00033 1.1E-08 71.9 8.1 71 129-215 13-94 (240)
229 2cq9_A GLRX2 protein, glutared 97.4 0.00044 1.5E-08 63.8 8.1 76 128-219 17-93 (130)
230 4hde_A SCO1/SENC family lipopr 97.3 0.00059 2E-08 65.5 9.1 42 137-181 31-78 (170)
231 1t3b_A Thiol:disulfide interch 97.3 0.00039 1.3E-08 69.4 7.9 23 136-158 84-106 (211)
232 3hd5_A Thiol:disulfide interch 97.3 0.00085 2.9E-08 65.3 9.9 43 137-182 24-66 (195)
233 1ego_A Glutaredoxin; electron 97.3 0.00024 8.3E-09 59.4 5.1 66 142-218 3-70 (85)
234 2c0d_A Thioredoxin peroxidase 97.3 0.00037 1.3E-08 70.3 7.2 79 137-219 55-161 (221)
235 4g2e_A Peroxiredoxin; redox pr 97.2 0.00018 6.2E-09 68.1 4.2 99 137-242 29-154 (157)
236 1kte_A Thioltransferase; redox 97.2 0.00093 3.2E-08 58.3 8.3 73 130-218 4-80 (105)
237 3gyk_A 27KDA outer membrane pr 97.2 0.00091 3.1E-08 63.8 8.9 30 136-171 20-49 (175)
238 3p7x_A Probable thiol peroxida 97.2 0.00044 1.5E-08 65.6 6.6 96 137-242 45-164 (166)
239 2hls_A Protein disulfide oxido 97.2 0.0014 4.9E-08 66.7 10.5 71 128-210 14-93 (243)
240 1v58_A Thiol:disulfide interch 97.2 0.00015 5.3E-09 73.9 3.1 31 136-172 95-125 (241)
241 1ks8_A Endo-B-1,4-glucanase; c 97.2 0.0062 2.1E-07 67.7 16.1 89 544-650 150-240 (433)
242 1clc_A Endoglucanase CELD; EC: 97.2 0.0067 2.3E-07 70.5 17.1 89 544-650 287-378 (639)
243 1psq_A Probable thiol peroxida 97.1 0.0012 4.3E-08 62.3 8.6 96 137-242 41-161 (163)
244 3ixr_A Bacterioferritin comigr 97.1 0.0016 5.4E-08 62.9 9.4 79 137-219 50-156 (179)
245 3h93_A Thiol:disulfide interch 97.1 0.001 3.5E-08 64.6 7.8 22 137-158 24-45 (192)
246 1ia6_A Cellulase CEL9M; cellul 97.1 0.012 4.2E-07 65.4 17.2 86 543-649 152-237 (441)
247 3rhb_A ATGRXC5, glutaredoxin-C 97.0 0.002 6.9E-08 57.4 8.6 78 128-219 9-86 (113)
248 2hze_A Glutaredoxin-1; thiored 97.0 0.00055 1.9E-08 61.4 4.4 80 128-219 9-88 (114)
249 1h75_A Glutaredoxin-like prote 97.0 0.0012 4.1E-08 54.7 6.2 59 142-217 3-61 (81)
250 3c1r_A Glutaredoxin-1; oxidize 96.9 0.002 6.9E-08 58.4 7.6 80 128-219 15-95 (118)
251 3a2v_A Probable peroxiredoxin; 96.9 0.0015 5.2E-08 67.3 7.4 98 137-242 32-158 (249)
252 2yzh_A Probable thiol peroxida 96.9 0.0023 7.9E-08 60.8 8.1 21 137-157 46-67 (171)
253 3msz_A Glutaredoxin 1; alpha-b 96.9 0.0012 4.2E-08 55.4 5.5 65 140-218 4-73 (89)
254 2pn8_A Peroxiredoxin-4; thiore 96.9 0.0017 5.7E-08 64.7 7.3 80 137-220 47-155 (211)
255 3qpm_A Peroxiredoxin; oxidored 96.8 0.0019 6.5E-08 65.8 7.6 80 137-220 76-184 (240)
256 3me7_A Putative uncharacterize 96.8 0.0029 9.8E-08 60.5 8.3 21 137-157 27-48 (170)
257 2r37_A Glutathione peroxidase 96.8 0.005 1.7E-07 61.3 10.2 20 137-156 37-56 (207)
258 2i3y_A Epididymal secretory gl 96.8 0.0023 7.8E-08 64.4 7.5 41 137-181 55-96 (215)
259 3nzn_A Glutaredoxin; structura 96.7 0.0033 1.1E-07 55.2 7.6 63 139-209 21-83 (103)
260 2lqo_A Putative glutaredoxin R 96.7 0.0033 1.1E-07 54.9 7.0 63 142-219 6-69 (92)
261 3h8q_A Thioredoxin reductase 3 96.7 0.0047 1.6E-07 55.4 8.3 77 128-219 7-83 (114)
262 2a4v_A Peroxiredoxin DOT5; yea 96.7 0.0036 1.2E-07 58.6 7.8 76 137-219 34-132 (159)
263 1n8j_A AHPC, alkyl hydroperoxi 96.7 0.0044 1.5E-07 60.1 8.6 79 137-219 29-133 (186)
264 3keb_A Probable thiol peroxida 96.7 0.0074 2.5E-07 61.2 10.4 38 204-244 137-174 (224)
265 2yan_A Glutaredoxin-3; oxidore 96.6 0.0069 2.4E-07 53.3 8.7 74 128-219 7-85 (105)
266 1g87_A Endocellulase 9G; endog 96.6 0.052 1.8E-06 62.8 17.9 84 545-648 152-237 (614)
267 1fov_A Glutaredoxin 3, GRX3; a 96.5 0.0056 1.9E-07 50.5 7.2 61 142-218 3-63 (82)
268 3uem_A Protein disulfide-isome 96.5 0.0037 1.3E-07 66.6 7.6 70 135-215 132-205 (361)
269 3hz8_A Thiol:disulfide interch 96.5 0.0082 2.8E-07 58.8 9.2 43 137-182 23-65 (193)
270 2ri9_A Mannosyl-oligosaccharid 96.4 0.12 4.1E-06 57.9 19.4 120 579-706 313-448 (475)
271 1r7h_A NRDH-redoxin; thioredox 96.4 0.005 1.7E-07 49.8 6.1 59 142-217 3-61 (75)
272 1q98_A Thiol peroxidase, TPX; 96.4 0.0039 1.3E-07 59.0 5.9 20 137-156 42-62 (165)
273 3tjj_A Peroxiredoxin-4; thiore 96.4 0.0034 1.2E-07 64.6 5.9 21 137-157 90-111 (254)
274 3zrd_A Thiol peroxidase; oxido 96.3 0.0042 1.4E-07 61.2 6.2 93 137-241 77-199 (200)
275 2klx_A Glutaredoxin; thioredox 96.3 0.0067 2.3E-07 51.4 6.5 59 142-218 8-67 (89)
276 1tf4_A T. fusca endo/EXO-cellu 96.3 0.036 1.2E-06 64.0 14.5 84 545-648 152-239 (605)
277 1hcu_A Alpha-1,2-mannosidase; 96.2 0.11 3.7E-06 58.7 17.7 260 374-706 170-467 (503)
278 3ctg_A Glutaredoxin-2; reduced 96.2 0.0093 3.2E-07 55.0 7.1 78 128-217 27-105 (129)
279 2rem_A Disulfide oxidoreductas 96.2 0.018 6E-07 55.5 9.4 23 137-159 24-46 (193)
280 3ic4_A Glutaredoxin (GRX-1); s 96.1 0.0072 2.5E-07 51.3 5.8 66 142-218 14-79 (92)
281 1x9d_A Endoplasmic reticulum m 96.1 0.22 7.4E-06 56.6 19.2 279 370-724 163-467 (538)
282 2g0d_A Nisin biosynthesis prot 96.0 0.073 2.5E-06 57.9 14.5 115 579-718 226-352 (409)
283 2znm_A Thiol:disulfide interch 95.9 0.015 5.2E-07 56.1 7.8 22 137-158 21-42 (195)
284 3qmx_A Glutaredoxin A, glutare 95.9 0.018 6.2E-07 50.5 7.5 65 139-219 15-80 (99)
285 1nxc_A Mannosyl-oligosaccharid 95.8 0.31 1E-05 54.7 18.7 275 371-724 100-401 (478)
286 2yik_A Endoglucanase; hydrolas 95.8 0.038 1.3E-06 63.9 11.7 86 546-649 219-306 (611)
287 3l4n_A Monothiol glutaredoxin- 95.8 0.029 1E-06 51.7 8.5 76 128-217 4-81 (127)
288 2khp_A Glutaredoxin; thioredox 95.7 0.018 6.3E-07 48.7 6.5 61 142-218 8-68 (92)
289 1wik_A Thioredoxin-like protei 95.5 0.034 1.2E-06 49.2 7.9 70 131-217 8-81 (109)
290 1dl2_A Class I alpha-1,2-manno 95.5 0.39 1.3E-05 54.2 18.2 277 371-724 94-426 (511)
291 2xfg_A Endoglucanase 1; hydrol 95.5 0.14 5E-06 57.2 14.5 85 545-649 173-260 (466)
292 2ri9_A Mannosyl-oligosaccharid 95.2 0.85 2.9E-05 51.1 19.5 280 370-724 81-403 (475)
293 4eo3_A Bacterioferritin comigr 95.1 0.046 1.6E-06 58.2 8.5 133 137-292 23-174 (322)
294 2v2g_A Peroxiredoxin 6; oxidor 95.0 0.051 1.7E-06 55.1 8.1 36 203-242 126-161 (233)
295 3gv1_A Disulfide interchange p 94.9 0.046 1.6E-06 51.6 7.0 26 134-159 10-35 (147)
296 1hcu_A Alpha-1,2-mannosidase; 94.9 0.81 2.8E-05 51.6 18.2 283 369-724 93-422 (503)
297 1prx_A HORF6; peroxiredoxin, h 94.7 0.14 4.6E-06 51.4 10.4 35 204-242 131-165 (224)
298 1un2_A DSBA, thiol-disulfide i 94.7 0.015 5.3E-07 57.4 3.3 47 138-184 113-159 (197)
299 1tp9_A Peroxiredoxin, PRX D (t 94.7 0.035 1.2E-06 52.3 5.7 18 137-154 34-52 (162)
300 1nxc_A Mannosyl-oligosaccharid 94.6 0.055 1.9E-06 60.7 7.7 100 620-723 105-205 (478)
301 1dl2_A Class I alpha-1,2-manno 94.6 0.3 1E-05 55.2 13.7 152 546-723 101-271 (511)
302 2wfc_A Peroxiredoxin 5, PRDX5; 94.5 0.032 1.1E-06 53.3 4.8 19 137-155 30-49 (167)
303 1z6m_A Conserved hypothetical 94.4 0.051 1.7E-06 51.5 6.1 24 137-160 26-49 (175)
304 1x9d_A Endoplasmic reticulum m 94.3 0.071 2.4E-06 60.5 7.7 100 619-724 168-268 (538)
305 1xcc_A 1-Cys peroxiredoxin; un 94.2 0.12 4E-06 51.8 8.4 35 204-242 128-162 (220)
306 1ia6_A Cellulase CEL9M; cellul 93.9 0.62 2.1E-05 51.7 14.4 153 299-467 50-236 (441)
307 1nm3_A Protein HI0572; hybrid, 93.8 0.11 3.8E-06 52.0 7.4 18 137-154 32-50 (241)
308 3uma_A Hypothetical peroxiredo 93.5 0.1 3.5E-06 50.8 6.3 19 137-155 55-74 (184)
309 2v8i_A Pectate lyase; periplas 93.4 0.19 6.6E-06 55.3 8.8 93 548-667 377-470 (543)
310 2wci_A Glutaredoxin-4; redox-a 93.4 0.19 6.4E-06 46.8 7.6 73 128-217 25-101 (135)
311 3e6u_A LANC-like protein 1; al 93.4 3.8 0.00013 44.7 19.4 138 513-707 47-184 (411)
312 3ipz_A Monothiol glutaredoxin- 93.1 0.28 9.4E-06 43.5 8.0 74 128-218 8-85 (109)
313 1aba_A Glutaredoxin; electron 93.1 0.18 6.3E-06 42.3 6.5 64 143-219 3-78 (87)
314 4dvc_A Thiol:disulfide interch 92.9 0.34 1.2E-05 45.6 8.9 22 137-158 20-41 (184)
315 2xfg_A Endoglucanase 1; hydrol 92.7 4.7 0.00016 45.0 19.0 111 299-415 70-213 (466)
316 3gzk_A Cellulase; fold from GH 92.3 1.5 5.3E-05 49.7 14.7 119 335-468 188-333 (537)
317 3zyw_A Glutaredoxin-3; metal b 92.3 0.34 1.2E-05 43.2 7.5 74 128-218 6-83 (111)
318 3mng_A Peroxiredoxin-5, mitoch 92.2 0.15 5.1E-06 49.1 5.4 19 137-155 42-61 (173)
319 1ks8_A Endo-B-1,4-glucanase; c 91.6 2.7 9.3E-05 46.4 15.4 143 299-460 48-229 (433)
320 3sbc_A Peroxiredoxin TSA1; alp 91.6 0.26 8.8E-06 49.6 6.5 101 137-243 51-178 (216)
321 1nm3_A Protein HI0572; hybrid, 91.6 0.31 1.1E-05 48.7 7.1 76 127-219 155-232 (241)
322 3gx8_A Monothiol glutaredoxin- 91.4 0.54 1.8E-05 42.6 7.9 75 129-218 7-86 (121)
323 2pwj_A Mitochondrial peroxired 91.0 0.24 8.3E-06 47.2 5.4 19 137-155 42-61 (171)
324 3l9v_A Putative thiol-disulfid 90.9 0.082 2.8E-06 51.3 2.0 45 138-182 14-58 (189)
325 1w6k_A Lanosterol synthase; cy 90.7 13 0.00046 43.6 21.0 60 359-425 440-502 (732)
326 2wem_A Glutaredoxin-related pr 90.6 0.5 1.7E-05 42.8 6.9 74 128-218 10-88 (118)
327 1wzz_A Probable endoglucanase; 89.1 5.2 0.00018 42.6 14.4 179 512-723 17-200 (334)
328 3tue_A Tryparedoxin peroxidase 89.0 0.57 1.9E-05 47.2 6.4 44 137-182 55-99 (219)
329 2g0d_A Nisin biosynthesis prot 88.6 5.1 0.00018 43.1 14.2 69 549-647 284-352 (409)
330 2ct6_A SH3 domain-binding glut 88.4 0.74 2.5E-05 40.8 6.1 65 142-217 10-83 (111)
331 1g87_A Endocellulase 9G; endog 88.4 19 0.00066 41.4 19.5 147 299-466 49-236 (614)
332 3feu_A Putative lipoprotein; a 87.4 0.41 1.4E-05 46.3 4.1 40 138-182 22-61 (185)
333 4f9z_D Endoplasmic reticulum r 87.2 2.1 7.2E-05 42.3 9.3 93 110-215 104-201 (227)
334 1ut9_A Cellulose 1,4-beta-cell 86.4 1.7 5.9E-05 50.1 9.2 85 547-649 291-381 (609)
335 3f4s_A Alpha-DSBA1, putative u 86.3 3.6 0.00012 41.2 10.4 28 138-167 39-66 (226)
336 1ut9_A Cellulose 1,4-beta-cell 85.5 11 0.00039 43.3 15.4 120 334-468 226-381 (609)
337 1t1v_A SH3BGRL3, SH3 domain-bi 81.5 3.4 0.00012 34.9 6.8 65 142-217 4-71 (93)
338 1clc_A Endoglucanase CELD; EC: 81.5 42 0.0014 38.7 18.1 159 545-722 198-379 (639)
339 2wul_A Glutaredoxin related pr 81.3 2.7 9.3E-05 38.1 6.4 55 128-191 10-68 (118)
340 2x8g_A Thioredoxin glutathione 80.9 2.9 9.9E-05 47.5 8.0 74 129-218 9-83 (598)
341 2z07_A Putative uncharacterize 78.2 10 0.00035 40.9 11.1 50 543-607 238-287 (420)
342 4f82_A Thioredoxin reductase; 77.2 4.2 0.00014 39.4 6.7 19 137-155 46-65 (176)
343 3tdg_A DSBG, putative uncharac 76.7 1.8 6.2E-05 44.9 4.2 31 136-172 145-175 (273)
344 1r76_A Pectate lyase; A-helica 75.8 97 0.0033 33.8 18.0 100 547-665 152-266 (408)
345 1gxm_A Pectate lyase; mechanis 75.0 2.2 7.5E-05 45.5 4.3 43 381-424 75-117 (332)
346 2okx_A Rhamnosidase B; alpha b 74.6 18 0.0006 43.8 12.7 113 541-667 625-751 (956)
347 3l9s_A Thiol:disulfide interch 73.4 1.9 6.5E-05 41.8 3.2 44 138-181 21-66 (191)
348 2jad_A Yellow fluorescent prot 73.4 3.3 0.00011 44.7 5.3 75 128-217 251-329 (362)
349 3c7m_A Thiol:disulfide interch 72.5 4 0.00014 38.6 5.2 43 137-181 16-60 (195)
350 2jg0_A Periplasmic trehalase; 72.1 13 0.00044 42.1 10.0 129 542-701 304-438 (535)
351 1w6k_A Lanosterol synthase; cy 72.0 24 0.00083 41.4 12.7 96 547-664 390-500 (732)
352 1wzz_A Probable endoglucanase; 71.2 8 0.00027 41.2 7.7 97 547-662 109-209 (334)
353 1u6t_A SH3 domain-binding glut 69.5 8.4 0.00029 35.1 6.3 44 142-189 2-46 (121)
354 2yik_A Endoglucanase; hydrolas 68.9 38 0.0013 38.9 13.2 122 579-719 152-305 (611)
355 3q6o_A Sulfhydryl oxidase 1; p 68.9 7.9 0.00027 38.3 6.7 86 135-242 154-239 (244)
356 1r76_A Pectate lyase; A-helica 68.4 3.7 0.00013 44.9 4.3 42 382-424 151-195 (408)
357 1ulv_A Glucodextranase; GH fam 67.1 63 0.0021 39.5 15.2 123 583-723 348-477 (1020)
358 3cih_A Putative alpha-rhamnosi 66.8 20 0.00067 42.1 10.4 111 542-666 382-508 (739)
359 2okx_A Rhamnosidase B; alpha b 64.6 1.2E+02 0.0043 36.4 17.1 132 583-724 595-737 (956)
360 3ren_A Glycosyl hydrolase, fam 64.5 16 0.00055 39.2 8.3 119 586-724 82-201 (350)
361 1v5d_A Chitosanase; chitosan d 62.8 10 0.00034 41.2 6.4 94 547-655 138-231 (386)
362 2axo_A Hypothetical protein AT 62.6 21 0.00071 36.9 8.4 18 141-158 45-62 (270)
363 3a0o_A Oligo alginate lyase; a 62.4 97 0.0033 36.2 15.3 27 383-409 209-235 (776)
364 2h6f_B Protein farnesyltransfe 61.4 17 0.00058 40.1 8.0 118 286-427 76-195 (437)
365 2z07_A Putative uncharacterize 56.9 35 0.0012 36.7 9.5 46 622-668 238-288 (420)
366 1z3e_A Regulatory protein SPX; 56.2 9.2 0.00031 34.8 4.0 60 142-215 3-63 (132)
367 1kwf_A Endoglucanase A; hydrol 56.1 1.1E+02 0.0036 32.8 13.0 122 586-723 82-212 (363)
368 1kwf_A Endoglucanase A; hydrol 55.0 1.7E+02 0.0057 31.3 14.3 94 547-656 123-216 (363)
369 3l78_A Regulatory protein SPX; 54.1 10 0.00035 34.0 3.9 61 142-216 2-63 (120)
370 3fz4_A Putative arsenate reduc 53.9 12 0.0004 33.7 4.3 60 142-215 5-65 (120)
371 1v7w_A Chitobiose phosphorylas 53.2 36 0.0012 40.1 9.5 110 547-662 429-552 (807)
372 1s3c_A Arsenate reductase; ARS 51.4 8.1 0.00028 35.9 2.8 61 143-217 5-66 (141)
373 3ren_A Glycosyl hydrolase, fam 50.6 35 0.0012 36.6 7.9 87 547-655 117-203 (350)
374 2l4c_A Endoplasmic reticulum r 50.5 41 0.0014 30.2 7.4 66 128-212 29-94 (124)
375 3gkx_A Putative ARSC family re 49.1 9.7 0.00033 34.2 2.9 60 142-215 6-66 (120)
376 1v5d_A Chitosanase; chitosan d 47.7 87 0.003 33.8 10.7 124 586-722 98-227 (386)
377 2vn4_A Glucoamylase; hydrolase 47.0 3.7E+02 0.013 30.6 17.1 93 546-654 189-291 (599)
378 1sji_A Calsequestrin 2, calseq 45.8 72 0.0024 33.1 9.5 84 112-214 116-200 (350)
379 3rrs_A Cellobiose phosphorylas 44.8 1.8E+02 0.0062 34.5 13.7 112 535-658 419-565 (822)
380 3rdw_A Putative arsenate reduc 44.8 16 0.00054 32.9 3.6 62 142-217 7-70 (121)
381 2p0v_A Hypothetical protein BT 44.7 1.3E+02 0.0045 33.5 11.6 152 547-721 183-377 (489)
382 2sqc_A Squalene-hopene cyclase 44.7 97 0.0033 35.5 11.1 53 357-423 481-533 (631)
383 3qde_A Cellobiose phosphorylas 43.2 2E+02 0.0067 34.1 13.7 112 535-658 412-558 (811)
384 3rrs_A Cellobiose phosphorylas 42.4 91 0.0031 37.1 10.6 59 583-643 382-445 (822)
385 3us3_A Calsequestrin-1; calciu 42.2 70 0.0024 33.7 8.8 82 112-212 118-200 (367)
386 1ulv_A Glucodextranase; GH fam 41.9 3.2E+02 0.011 33.3 15.5 41 379-426 331-371 (1020)
387 3qde_A Cellobiose phosphorylas 41.7 1.1E+02 0.0036 36.4 11.1 59 583-643 375-438 (811)
388 1wu4_A Xylanase Y; (alpla/alph 39.9 1.1E+02 0.0036 33.3 9.8 131 586-723 89-230 (396)
389 1qqf_A Protein (complement C3D 39.4 3E+02 0.01 27.4 12.9 120 284-416 39-171 (277)
390 4gl3_A Putative glucoamylase; 39.3 80 0.0027 34.6 8.8 96 547-657 58-167 (424)
391 4fnv_A Heparinase III protein, 37.8 5.4E+02 0.018 29.8 17.6 92 545-660 261-360 (702)
392 2h8l_A Protein disulfide-isome 37.8 1.3E+02 0.0045 29.6 9.6 69 137-215 128-206 (252)
393 1h12_A Endo-1,4-beta-xylanase; 37.1 43 0.0015 36.5 6.2 89 547-656 147-240 (405)
394 3qxf_A Endoglucanase; cellulas 36.0 39 0.0013 36.2 5.5 75 586-660 53-135 (355)
395 2sqc_A Squalene-hopene cyclase 34.6 1.1E+02 0.0039 34.9 9.6 94 547-664 315-417 (631)
396 1n4q_B Geranyltransferase type 34.5 1E+02 0.0036 33.1 8.7 22 404-426 192-213 (377)
397 2a6h_F RNA polymerase sigma fa 34.3 70 0.0024 34.9 7.4 64 452-537 353-422 (423)
398 2jg0_A Periplasmic trehalase; 34.1 43 0.0015 37.8 5.8 50 619-668 305-361 (535)
399 3cih_A Putative alpha-rhamnosi 34.0 58 0.002 38.0 7.1 55 545-611 456-513 (739)
400 1qqf_A Protein (complement C3D 33.8 47 0.0016 33.6 5.6 79 334-425 33-111 (277)
401 1h12_A Endo-1,4-beta-xylanase; 33.0 95 0.0033 33.8 8.1 122 586-723 97-236 (405)
402 3bci_A Disulfide bond protein 32.8 27 0.00093 32.7 3.4 24 136-159 9-32 (186)
403 1v7w_A Chitobiose phosphorylas 32.2 3E+02 0.01 32.1 12.9 50 546-607 505-557 (807)
404 3q7a_B Farnesyltransferase bet 32.0 1.8E+02 0.006 32.8 10.2 123 281-425 107-236 (520)
405 3qxf_A Endoglucanase; cellulas 32.0 59 0.002 34.9 6.1 88 547-655 98-191 (355)
406 2wy7_A Complement C3D fragment 31.7 4.3E+02 0.015 26.8 12.8 120 284-416 55-187 (310)
407 3t72_q RNA polymerase sigma fa 31.6 1.3E+02 0.0044 25.9 7.2 29 499-527 41-69 (99)
408 1g9g_A Cellulase CEL48F; proce 30.8 3.4E+02 0.012 30.6 11.8 110 535-660 401-536 (629)
409 1hzf_A Complement factor C4A; 30.6 3.8E+02 0.013 28.1 12.3 115 284-416 92-227 (367)
410 3gha_A Disulfide bond formatio 30.0 51 0.0018 31.8 4.9 30 137-168 28-57 (202)
411 2wy7_A Complement C3D fragment 29.6 59 0.002 33.5 5.6 79 334-425 49-127 (310)
412 1wu4_A Xylanase Y; (alpla/alph 28.7 59 0.002 35.3 5.5 102 547-662 131-239 (396)
413 1xiy_A Peroxiredoxin, pfaop; a 27.6 69 0.0024 30.6 5.3 27 137-163 42-69 (182)
414 4glt_A Glutathione S-transfera 27.4 2.4E+02 0.0082 26.9 9.3 59 144-218 25-83 (225)
415 2w7n_A TRFB transcriptional re 26.2 1.5E+02 0.005 26.0 6.6 54 448-526 5-63 (101)
416 3c68_A Uncharacterized protein 26.1 70 0.0024 37.7 5.9 43 625-667 561-607 (761)
417 3f0i_A Arsenate reductase; str 26.1 18 0.00063 32.3 0.8 62 142-217 6-69 (119)
418 3bci_A Disulfide bond protein 25.8 30 0.001 32.4 2.3 18 199-219 145-162 (186)
419 3t58_A Sulfhydryl oxidase 1; o 25.7 53 0.0018 36.8 4.6 65 135-217 154-219 (519)
420 1hzf_A Complement factor C4A; 25.5 1.2E+02 0.004 32.2 7.1 77 335-425 87-163 (367)
421 2vn4_A Glucoamylase; hydrolase 25.4 6.8E+02 0.023 28.4 13.9 139 547-723 56-224 (599)
422 1lf6_A Glucoamylase; (alpha/al 25.1 1E+02 0.0036 35.6 7.1 39 379-425 342-380 (684)
423 2g2q_A Glutaredoxin-2; thiored 24.6 68 0.0023 29.1 4.1 36 139-181 2-37 (124)
424 1fob_A Beta-1,4-galactanase; B 24.4 2.8E+02 0.0096 28.8 9.8 39 128-166 63-103 (334)
425 3c68_A Uncharacterized protein 24.1 94 0.0032 36.6 6.5 51 545-607 554-607 (761)
426 3gha_A Disulfide bond formatio 24.1 53 0.0018 31.7 3.8 33 199-242 159-191 (202)
427 1l9z_H Sigma factor SIGA; heli 24.1 78 0.0027 34.9 5.4 53 452-526 368-424 (438)
428 3gmf_A Protein-disulfide isome 24.1 56 0.0019 31.8 3.9 32 199-241 164-195 (205)
429 2wam_A RV2714, conserved hypot 24.1 3.4E+02 0.011 28.9 10.2 161 108-299 140-309 (351)
430 2o8x_A Probable RNA polymerase 23.8 68 0.0023 24.7 3.7 29 499-527 33-61 (70)
431 3feu_A Putative lipoprotein; a 23.6 51 0.0017 31.2 3.5 35 199-242 148-183 (185)
432 2rdy_A BH0842 protein; PSI-II, 23.3 2.2E+02 0.0075 33.6 9.5 34 621-654 449-483 (803)
433 1hjs_A Beta-1,4-galactanase; 4 22.8 2.6E+02 0.0088 29.2 9.1 36 128-163 63-100 (332)
434 3hug_A RNA polymerase sigma fa 22.1 81 0.0028 26.2 4.1 29 499-527 55-83 (92)
435 3gmf_A Protein-disulfide isome 21.7 43 0.0015 32.6 2.5 24 138-161 15-38 (205)
436 2p90_A Hypothetical protein CG 21.5 3.8E+02 0.013 27.9 10.0 164 109-301 101-271 (319)
437 2fba_A Glucoamylase Glu1; (alp 21.4 2.5E+02 0.0087 31.1 9.1 118 534-664 141-272 (492)
438 3ir4_A Glutaredoxin 2; glutath 21.1 1.4E+02 0.0048 28.1 6.1 59 143-218 5-63 (218)
439 3kzq_A Putative uncharacterize 21.0 54 0.0018 31.4 3.1 37 199-242 165-202 (208)
440 2p0v_A Hypothetical protein BT 20.8 5.3E+02 0.018 28.7 11.3 105 618-722 178-315 (489)
No 1
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}
Probab=100.00 E-value=1.5e-44 Score=355.88 Aligned_cols=168 Identities=52% Similarity=1.035 Sum_probs=163.3
Q ss_pred cccccccCCChhhhcccCCCCccccchHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEc
Q 004888 101 HTNRLAAEHSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVD 180 (725)
Q Consensus 101 ~~NrL~~e~spyl~~ha~~~V~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD 180 (725)
++|||+.|+||||+||+++||+|++|+++++++|+++||||||+|+|+||+|||+|+.++|++++|++.+|++||+||||
T Consensus 2 ~~n~l~~~~spyl~~ha~~~v~W~~~~~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD 81 (173)
T 3ira_A 2 EPNRLIKEKSPYLLQHAYNPVDWYPWGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVD 81 (173)
T ss_dssp CCCGGGGCCCHHHHTTTTSSSCCBCSSHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEE
T ss_pred CCcccccCCCHHHHhccCCCCCCCCcCHHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCccccccccCCCCCCCcchHHHHHHHHHHHHhhchHHHHHhHHHHH
Q 004888 181 REERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDKKRDMLAQSGAFAI 260 (725)
Q Consensus 181 ~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i~~~~~~~~~~l~~~a~~~~ 260 (725)
++++|++++.||.++|.++|++|||++||++|+|++++++||+|+++.+++++|+++|++|.+.|+++|++|++.|+++.
T Consensus 82 ~de~~~l~~~y~~~~q~~~gv~g~Pt~v~l~~dG~~v~~~ty~p~~~~~~~~~f~~~L~~v~~~~~~~~~~~~~~~~~~~ 161 (173)
T 3ira_A 82 REERPDIDNIYMTVCQIILGRGGWPLNIIMTPGKKPFFAGTYIPKNTRFNQIGMLELVPRIKEIWEQQHEEVLDSAEKIT 161 (173)
T ss_dssp TTTCHHHHHHHHHHHHHHHSCCCSSEEEEECTTSCEEEEESSCCSSCBTTBCCHHHHHHHHHHHHHHSHHHHHHHHHHTC
T ss_pred CcccCcHHHHHHHHHHHHcCCCCCcceeeECCCCCceeeeeeCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 004888 261 EQLSEALS 268 (725)
Q Consensus 261 ~~l~~~~~ 268 (725)
++|++...
T Consensus 162 ~~~~~~~~ 169 (173)
T 3ira_A 162 STIQEMIK 169 (173)
T ss_dssp SHHHHHHH
T ss_pred HHHHHhhc
Confidence 99987654
No 2
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=100.00 E-value=1e-34 Score=319.26 Aligned_cols=338 Identities=10% Similarity=-0.016 Sum_probs=253.8
Q ss_pred HHHHHHHHH-hhccccCCCCCC------CCCCCChhHHHH----HHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCC
Q 004888 285 LRLCAEQLS-KSYDSRFGGFGS------APKFPRPVEIQM----MLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGI 353 (725)
Q Consensus 285 ~~~~~~~l~-~~~D~~~GGfg~------apKFP~~~~l~~----ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~ma~gGi 353 (725)
++.++..+. ..+|+++|||.+ .|| |.+..+.+ +..+........ ...+++.+++|.+|++.|.+++
T Consensus 19 ~~~~l~~w~~~~~D~~~GGf~~~~~~dg~~~-~~~k~l~~nar~l~~~a~a~~~~~-~~~~~~~l~~A~~~~~fl~~~~- 95 (402)
T 1fp3_A 19 LDRVMAFWLEHSHDREHGGFFTCLGRDGRVY-DDLKYVWLQGRQVWMYCRLYRKLE-RFHRPELLDAAKAGGEFLLRHA- 95 (402)
T ss_dssp HHHHHHHHHHHSBCTTTSSBCCCBCTTSCBS-CCCEEHHHHHHHHHHHHHHHHHCG-GGCCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhhccCCCCCCCCEeeEECCCCCCC-CCccchhhhHHHHHHHHHHHHHhc-ccCCHHHHHHHHHHHHHHHHhc-
Confidence 356677787 799999999966 788 76543333 333321111000 0124789999999999999977
Q ss_pred cccCCC-eEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhcc-CCCCceeeeccCCC
Q 004888 354 HDHVGG-GFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMI-GPGGEIFSAEDADS 431 (725)
Q Consensus 354 ~D~v~G-GF~RYs~D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~-~~~Ggfysa~DADs 431 (725)
+|+.+| ||| |++|++|.+||++|||||||.++++|+++|++|+++.|++.|+++++++.+.|. +++| +|++.|++.
T Consensus 96 ~d~~gg~g~~-~s~d~dg~~~~~~~~lyd~af~~~a~~~~~~atgd~~~~~~A~~l~~~~~~~~~d~~~G-~f~~~~~~~ 173 (402)
T 1fp3_A 96 RVAPPEKKCA-FVLTRDGRPVKVQRSIFSECFYTMAMNELWRVTAEARYQSEAVDMMDQIVHWVREDPSG-LGRPQLPGA 173 (402)
T ss_dssp BSSTTSCCBC-SEECTTSCEEECCSSSHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTCGGG-GCCCCCTTS
T ss_pred cCcCCCCceE-EEECCCCCccccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCc-ccCccccCc
Confidence 999988 999 899999999999999999999999999999999999999999999999999998 5555 556666543
Q ss_pred ccccccccccCcceEEechHHHHHHhhhhHHHHHH---HhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcC
Q 004888 432 AETEGATRKKEGAFYVWTSKEVEDILGEHAILFKE---HYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLG 508 (725)
Q Consensus 432 ~~~~~~~~~~EGayY~wt~~Ei~~~lg~~~~l~~~---~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g 508 (725)
.+ .++. . ..-...+.+.+ ++.++++ +
T Consensus 174 ~~-------~~~~----~------~~m~~~~~~l~l~~l~~~~~~----------------------------------~ 202 (402)
T 1fp3_A 174 VA-------SESM----A------VPMMLLCLVEQLGEEDEELAG----------------------------------R 202 (402)
T ss_dssp CC-------EEET----H------HHHHHHHHHHHHHTTCHHHHH----------------------------------H
T ss_pred cC-------CCCc----c------hHHHHHHHHHHHHHHHHhcCc----------------------------------H
Confidence 21 1100 0 00011112222 2222210 1
Q ss_pred CCHHHHHHHHHHHHHHHHhhhccCCCCCCCcchhhhc----H--------HH---HHHHHHHHHHHhhhhhhhhcccCCC
Q 004888 509 MPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSW----N--------GL---VISSFARASKILKSEAESAMFNFPV 573 (725)
Q Consensus 509 ~~~e~~~~~l~~~r~kL~~~R~~R~~P~lDdKiitsW----N--------al---~I~aLa~A~~vl~d~~~~~~~~~~~ 573 (725)
..+.+.++++.++++ ++.|..|+.+++|.. | | |. ..+.|+++++++++
T Consensus 203 -~~~~a~~~~~~~~~~-~~~~~~~~~e~~d~d----w~~~~~~~g~~~~pgh~ie~~wlL~~a~~~~~~----------- 265 (402)
T 1fp3_A 203 -YAQLGHWCARRILQH-VQRDGQAVLENVSED----GEELSGCLGRHQNPGHALEAGWFLLRHSSRSGD----------- 265 (402)
T ss_dssp -THHHHHHHHHHHHTT-EETTTTEECSEEETT----SCBCCHHHHHEECHHHHHHHHHHHHHHHHHTTC-----------
T ss_pred -HHHHHHHHHHHHHHH-hCcCCCeEEEEECCC----CCccCCCCCCCCCCCcHHHHHHHHHHHHHHcCC-----------
Confidence 134566778888888 888999999998863 6 2 22 34489999999998
Q ss_pred CCCChHHHHHHHHHHHHHH-HHhccccCCCeEEEE-ecCCCCC-----CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004888 574 VGSDRKEYMEVAESAASFI-RRHLYDEQTHRLQHS-FRNGPSK-----APGFLDDYAFLISGLLDLYEFGSGTKWLVWAI 646 (725)
Q Consensus 574 ~~~~~~~yl~~A~~~a~~l-~~~l~d~~~G~l~~s-~~~g~~~-----~~~~leDyA~li~aLL~LYe~Tgd~~yL~~A~ 646 (725)
++|++.|+++++++ .++.||++.|+++++ ..+|.+. ....++.++++|.|++.||++|||++||++|.
T Consensus 266 -----~~~l~~A~~~~~~~~~~~~~d~~~gg~~~~~~~~g~~~~~l~d~~~~~W~qaea~~a~l~ly~~tgd~~yl~~a~ 340 (402)
T 1fp3_A 266 -----AKLRAHVIDTFLLLPFRSGWDADHGGLFYFQDADGLCPTQLEWAMKLWWPHSEAMIAFLMGYSESGDPALLRLFY 340 (402)
T ss_dssp -----HHHHHHHHHHHTHHHHHHHBCTTTCSBCSCEETTSCCCSSTTTTCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHHHHhccCCCCCEEEeecCCCCccccCcCCCcCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 78999999999999 999999875667665 6677653 34556677799999999999999999999999
Q ss_pred HHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHHHH
Q 004888 647 ELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLA 701 (725)
Q Consensus 647 ~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~ 701 (725)
++++.+.++|+|+++|+||++...+..+..+.|. .-+.+|++|..++..++++-
T Consensus 341 ~~~~~~~~~f~D~~~G~w~~~~~~~g~~~~~~k~-~~~k~~yH~~r~~~~~~~~~ 394 (402)
T 1fp3_A 341 QVAEYTFRQFRDPEYGEWFGYLNREGKVALTIKG-GPFKGCFHVPRCLAMCEEML 394 (402)
T ss_dssp HHHHHHHHHTBCTTTSSBCCEECTTSCEEECCSS-CSSCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCCceEeeECCCcCCCCCCCC-CCCCCCCccHHHHHHHHHHH
Confidence 9999999999999999999988877776654333 45579999999887776643
No 3
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=100.00 E-value=4.5e-34 Score=311.89 Aligned_cols=338 Identities=12% Similarity=0.051 Sum_probs=242.2
Q ss_pred HHHHHHHHHHHHhCCCcccCCCeE-EEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHc-cCChHHHHHHHHHHHHHHHh
Q 004888 338 QKMVLFTLQCMAKGGIHDHVGGGF-HRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSL-TKDVFYSYICRDILDYLRRD 415 (725)
Q Consensus 338 ~~~~~~TL~~ma~gGi~D~v~GGF-~RYs~D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~-t~d~~y~~vA~~~~~fl~~~ 415 (725)
++.+...+-......++|| +||| +||++|.. .+|| |||||||||++++|++||++ ++++.|+++|+++++||+++
T Consensus 13 ~~~l~~~~l~fw~~~~~D~-~GGf~~~~~~d~~-~~~~-eK~l~~nar~i~~~a~a~~~~~~~~~~~~~A~~~~~~l~~~ 89 (388)
T 2gz6_A 13 KNALLNDVLPFWENHSLDS-EGGYFTCLDRQGK-VYDT-DKFIWLQNRQVWTFSMLCNQLEKRENWLKIARNGAKFLAQH 89 (388)
T ss_dssp HHHHHHTHHHHHHHHCBCT-TSSBCCEEBTTSC-EEEC-CEEHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHhcCCCC-CCCEEeEECCCCC-cCCc-chhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 3334333444444568999 9995 79999988 8888 99999999999999999999 89999999999999999999
Q ss_pred ccCCCCceeeeccCCCccccccccccCcceEEechHHHHHHhhhh--HHHHHHHhcc------cCCCCcCCCCCCCCCCC
Q 004888 416 MIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH--AILFKEHYYL------KPTGNCDLSRMSDPHNE 487 (725)
Q Consensus 416 m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~lg~~--~~l~~~~y~l------~~~Gn~e~~~~~dp~~~ 487 (725)
|++++||||+++|+|+.+.+..+..+..+|+++...++.+++|+. .+.+.+.+.. .+.|.+... .+....
T Consensus 90 ~~~~~Gg~~~~~d~dg~~~~~~~~~~~~af~i~al~~~y~~tg~~~~l~~A~~~~~~i~~~~~d~~g~~~~~--~~~~~~ 167 (388)
T 2gz6_A 90 GRDDEGNWYFALTRGGEPLVQPYNIFSDCFAAMAFSQYALASGEEWAKDVAMQAYNNVLRRKDNPKGKYTKT--YPGTRP 167 (388)
T ss_dssp SBCTTSCBCSEECTTSCBCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTC----------------CCC
T ss_pred cCCCCCCEEEEEcCCCCcccCCcchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCcccCcc--cCCCCC
Confidence 999999999999999988776778889999999999999999954 3333333322 233543211 000011
Q ss_pred CCCcce-eeccCCchHHHHhcCCCH-HHHHH----HHHHHHHHHHhhhccCCCCCCCc-----------chhhhcHHHHH
Q 004888 488 FKGKNV-LIELNDSSASASKLGMPL-EKYLN----ILGECRRKLFDVRSKRPRPHLDD-----------KVIVSWNGLVI 550 (725)
Q Consensus 488 f~g~nv-L~~~~~~~~~a~~~g~~~-e~~~~----~l~~~r~kL~~~R~~R~~P~lDd-----------KiitsWNal~I 550 (725)
..|.+. .+. .+.+...+.++. +++.+ +++.+.+++.+....+..+++|+ .+.-+-|.-++
T Consensus 168 ~~~~~~~~~~---~~all~l~~~t~d~~~~~~A~~~~~~~~~~~~~~~~g~~~e~~~~~w~~~~~~~~~~~~pgh~~e~a 244 (388)
T 2gz6_A 168 MKALAVPMIL---ANLTLEMEWLLPQETLENVLAATVQEVMGDFLDQEQGLMYENVAPDGSHIDCFEGRLINPGHGIEAM 244 (388)
T ss_dssp CEETHHHHHH---HHHHHHTGGGSCHHHHHHHHHHHHHHHHHTTEETTTTEECSEECTTSCCCCSTTTTEECHHHHHHHH
T ss_pred CCCCCHHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCCCCcccCcCCCCHHHHHH
Confidence 111110 011 122334455543 33333 33344444444343444343333 22233445678
Q ss_pred HHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCC-----CCCCcchHHH
Q 004888 551 SSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSK-----APGFLDDYAF 624 (725)
Q Consensus 551 ~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s-~~~g~~~-----~~~~leDyA~ 624 (725)
+.|.++++++|| ++|++.|+++++++.++.||++.|++++. ..+|.+. ..+.++.+|+
T Consensus 245 ~lL~~~~~~tgd----------------~~~~~~A~~~~~~~~~~g~d~~~Gg~~~~~~~~g~~~~~~~~~~~~~W~qae 308 (388)
T 2gz6_A 245 WFIMDIARRKND----------------SKTINQAVDVVLNILNFAWDNEYGGLYYFMDAAGHPPQQLEWDQKLWWVHLE 308 (388)
T ss_dssp HHHHHHHHHTTC----------------HHHHHHHHHHHHHHHHHHBCTTTCSBCSCEETTSCCCSCTTTTCEEHHHHHH
T ss_pred HHHHHHHHHcCC----------------HHHHHHHHHHHHHHHHHhccCCCCCEEEeecCCCCccccCcCCCcCcHHHHH
Confidence 899999999998 78999999999999999999886777765 3456543 4466778999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHHH
Q 004888 625 LISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRL 700 (725)
Q Consensus 625 li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL 700 (725)
++.|++.+|++|||++|+++|+++++++.++|+|+++|+||+....+..+....| ..-+.+|+++..++..++++
T Consensus 309 ~i~a~~~ly~~tgd~~yl~~a~~~~~~~~~~~~D~~~G~w~~~l~~~g~~~~~~~-~~~~K~~YH~~~~~~~~~~~ 383 (388)
T 2gz6_A 309 SLVALAMGYRLTGRDACWAWYQKMHDYSWQHFADPEYGEWFGYLNRRGEVLLNLK-GGKWKGCFHVPRAMYLCWQQ 383 (388)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHBCTTTSSBCCEECTTSCBSSCBS-CCSSCSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCcCCCCCceEEeeCCCcCCCCcCC-CCCCCCCcchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998777766654333 23345899999998777664
No 4
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*
Probab=99.97 E-value=1.8e-30 Score=288.23 Aligned_cols=298 Identities=13% Similarity=0.032 Sum_probs=236.6
Q ss_pred HHHHHHHhhccccCCCCCC-------CCCCCChhHHH-HHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCC
Q 004888 287 LCAEQLSKSYDSRFGGFGS-------APKFPRPVEIQ-MMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVG 358 (725)
Q Consensus 287 ~~~~~l~~~~D~~~GGfg~-------apKFP~~~~l~-~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~ma~gGi~D~v~ 358 (725)
.+...+...+|++ ||+. -|.++.-..++ .|+..+...... .+++.+++|.+|++.|.++ ++|+++
T Consensus 19 ~ll~f~~~~~d~~--GF~~ld~~g~~~~~~~k~~~~nar~i~~~a~a~~~----g~~~~l~~A~~~~~fl~~~-~~D~~~ 91 (421)
T 2zbl_A 19 RIFNFGKNAVVPT--GFGWLGNKGQIKEEMGTHLWITARMLHVYSVAASM----GRPGAYDLVDHGIKAMNGA-LRDKKY 91 (421)
T ss_dssp HHHHHHGGGEETT--EECCBCTTSCBCGGGCEEHHHHHHHHHHHHHHHHT----TCTTHHHHHHHHHHHHTTT-TBCTTT
T ss_pred HHHHHHHhCcCCC--CcceECCCCCCCCCchhhHHHHHHHHHHHHHHHHc----CChhHHHHHHHHHHHHHHh-ccCcCC
Confidence 3344456788988 6842 24444443343 333322221111 2468899999999999997 999999
Q ss_pred CeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCC-CCceeeeccCCCcccccc
Q 004888 359 GGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGP-GGEIFSAEDADSAETEGA 437 (725)
Q Consensus 359 GGF~RYs~D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~-~Ggfysa~DADs~~~~~~ 437 (725)
|||| ||+|++|.+|| ||||||||.++.+|+. |++|+++.|++.|+++++++.++|+++ +||||++.|+|+.+.
T Consensus 92 GG~~-~s~d~dg~~~~-~k~lyd~Af~i~al~~-~~~tg~~~~l~~a~~~~~~l~~~~~d~~~Ggf~~~~d~d~~~~--- 165 (421)
T 2zbl_A 92 GGWY-ACVNDQGVVDA-SKQGYQHFFALLGAAS-AVTTGHPEARKLLDYTIEVIEKYFWSEEEQMCLESWDEAFSQT--- 165 (421)
T ss_dssp SSBC-SEEETTEEEEC-CEEHHHHHHHHHHHHH-HHTTTCTTHHHHHHHHHHHHHHHTEETTTTEECCEECTTSCSB---
T ss_pred CeEE-EEeCCCCCcCC-chhHHHHHHHHHHHHH-HHHhCCccHHHHHHHHHHHHHHHhccCCCCCeeeeecCCCCcc---
Confidence 9999 89999999999 9999999999999999 999999999999999999999999998 699999999987310
Q ss_pred ccccCcceEEechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHH
Q 004888 438 TRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNI 517 (725)
Q Consensus 438 ~~~~EGayY~wt~~Ei~~~lg~~~~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~e~~~~~ 517 (725)
+ +
T Consensus 166 ----~-----------------------------------------------~--------------------------- 167 (421)
T 2zbl_A 166 ----E-----------------------------------------------D--------------------------- 167 (421)
T ss_dssp ----C-----------------------------------------------S---------------------------
T ss_pred ----c-----------------------------------------------c---------------------------
Confidence 0 0
Q ss_pred HHHHHHHHHhhhccCCCCCCCcchhhhcHHHH--HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHh
Q 004888 518 LGECRRKLFDVRSKRPRPHLDDKVIVSWNGLV--ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRH 595 (725)
Q Consensus 518 l~~~r~kL~~~R~~R~~P~lDdKiitsWNal~--I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~ 595 (725)
...||+.| +.+|+++++++++ ++|++.|+++++++.++
T Consensus 168 ------------------------~~~~n~~m~~~~al~~l~~~tgd----------------~~~~~~A~~~~~~~~~~ 207 (421)
T 2zbl_A 168 ------------------------YRGGNANMHAVEAFLIVYDVTHD----------------KKWLDRALRIASVIIHD 207 (421)
T ss_dssp ------------------------CEEHHHHHHHHHHHHHHHHTTCC----------------THHHHHHHHHHHHHCCC
T ss_pred ------------------------cCCCcHHHHHHHHHHHHHHhhCC----------------HHHHHHHHHHHHHHHHH
Confidence 01378765 9999999999998 78999999999999999
Q ss_pred ccccCCCeEEEEecCCCCCCCCC-cch-----------HHHH---HHHHHHHHHHc---CC--H-HHHHHHHHHHHHHHH
Q 004888 596 LYDEQTHRLQHSFRNGPSKAPGF-LDD-----------YAFL---ISGLLDLYEFG---SG--T-KWLVWAIELQNTQDE 654 (725)
Q Consensus 596 l~d~~~G~l~~s~~~g~~~~~~~-leD-----------yA~l---i~aLL~LYe~T---gd--~-~yL~~A~~L~~~~~~ 654 (725)
+.++.+|++.+.++++.....++ ++| |++. +..|+++|+++ |+ + .|++.|+++++.+.+
T Consensus 208 ~~~~~~~~l~~~f~~~~~~~~~~~~dd~~~r~~~~~~~pgh~iE~~wlLl~~~~~~~~~~~~~~~~~l~~A~~l~~~~~~ 287 (421)
T 2zbl_A 208 VARNGDYRVNEHFDSQWNPIRDYNKDNPAHRFRAYGGTPGAWIEWGRLMLHLHAALEARFETPPAWLLEDAKGLFHATIR 287 (421)
T ss_dssp CCGGGTTCCCCEECTTSCBCTTTTTTSTTCSSSCSSBCHHHHHHHHHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHHHH
T ss_pred hccCCCCchhhhcCCccccchhccCCCcccccccCCCCCChHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHHHHHH
Confidence 98866678877776654433333 444 8877 77899999999 66 5 899999999999999
Q ss_pred HccccC-CCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhh
Q 004888 655 LFLDRE-GGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLYLRQ 724 (725)
Q Consensus 655 ~F~D~~-~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~t~~~~~~~y~~~A~~~l~~~~ 724 (725)
++||++ .||+|.+...+..++.+.|.. ..|+.++.++++|+.+||+ +.|.+.|++++..+.
T Consensus 288 ~g~d~~~~GG~~~~~~~~g~~~~~~k~~------w~~aea~~all~l~~~tgd---~~yl~~a~~~~~~~~ 349 (421)
T 2zbl_A 288 DAWAPDGADGFVYSVDWDGKPIVRERVR------WPIVEAMGTAYALYTLTDD---SQYEEWYQKWWDYCI 349 (421)
T ss_dssp HHBSCSSSSSBCSCBCTTSCBSCCCEEH------HHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCcEEEeecCCCCccCCCccc------HHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHH
Confidence 999988 577776665555665555553 6699999999999999997 789999999988763
No 5
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=99.96 E-value=1.2e-28 Score=271.95 Aligned_cols=342 Identities=15% Similarity=0.102 Sum_probs=243.5
Q ss_pred HHHHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhcc
Q 004888 338 QKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMI 417 (725)
Q Consensus 338 ~~~~~~TL~~ma~gGi~D~v~GGF~RYs~D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~ 417 (725)
...+...|.=-... ..| .+||||.+..++...+||+|||+++|||+|++|+.||++++++.|+++|+++++||.++|+
T Consensus 12 ~~~~~~~l~fw~~~-~~D-~~GGf~~~l~~dg~~~~~~~k~l~~n~r~i~~~a~a~~~~g~~~~l~~A~~~~~fl~~~~~ 89 (402)
T 3gt5_A 12 RTHISDTMAFYHPR-CID-SAGGFFHYFRDDGSIYNATHRHLVSSTRFVFNYAMAYLQFGTAEYLDAVHHGLSYVRDVHR 89 (402)
T ss_dssp HHHHHHHHHHHTTT-TBC-TTSSBCCEECTTSCEEESSEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHhc-CCC-CCcCeeeEECCCCCCCCCCchhHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHhCc
Confidence 33344445433333 357 5899997544444467999999999999999999999999999999999999999999999
Q ss_pred CCC-CceeeeccCCCccccccccccCcceEEechHHHHHHhhhh--HHHH-------HHHhcccCCC-CcCCCCCCCCC-
Q 004888 418 GPG-GEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH--AILF-------KEHYYLKPTG-NCDLSRMSDPH- 485 (725)
Q Consensus 418 ~~~-Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~lg~~--~~l~-------~~~y~l~~~G-n~e~~~~~dp~- 485 (725)
+++ ||||+++ .|+.+.+..+..+.-+|+++...|++ ++++. .+.+ .++|.-...| .++.. ..|+.
T Consensus 90 d~~~Gg~~~~~-~dG~~~~~~~~lyd~Af~i~al~~~~-~tgd~~~l~~A~~l~~~i~~~f~d~~~G~~~~~~-~~~~~~ 166 (402)
T 3gt5_A 90 NPATGGYAWTL-CDDRVEDDTNHCYGLAFVMLAYSCGL-KVGIKQAREWMDETWCLLERHFWDAEYGLYKDEA-DAQWNF 166 (402)
T ss_dssp CTTTSCBCSEE-ETTEEEECCEEHHHHHHHHHHHHHHH-HTTCTTHHHHHHHHHHHHHHHTEETTTTEECCEE-CTTCCB
T ss_pred cCCCCcEEEEe-eCCCCCcCCcchHHHHHHHHHHHHHH-HhCChhHHHHHHHHHHHHHHHhcCCcCCCchhhh-CCCCCC
Confidence 998 9999999 88877667777888899999999944 57742 3333 3343222223 22111 11111
Q ss_pred CCC-CCcceeeccCCchHHHHhcCCC--HHHHHHHHHHHHHHHHhhhccCCCCCCCcc--hhhhcH--------------
Q 004888 486 NEF-KGKNVLIELNDSSASASKLGMP--LEKYLNILGECRRKLFDVRSKRPRPHLDDK--VIVSWN-------------- 546 (725)
Q Consensus 486 ~~f-~g~nvL~~~~~~~~~a~~~g~~--~e~~~~~l~~~r~kL~~~R~~R~~P~lDdK--iitsWN-------------- 546 (725)
... .++.+.|+.+..-.+.+..|-. .+...++++.+.+++.+....+..-++|.. .+..+|
T Consensus 167 ~~~~~~n~~m~l~eall~L~~~tgd~~~~~~a~~l~~~~~~~f~~~~~g~l~e~~~~dw~~~~~~~~~~~~~~~~~~~~~ 246 (402)
T 3gt5_A 167 TRYRGQNANMHMCEAMLAAYEASGEQRYLERALVLADRITRRQAAKADGLVWEHYDMRWEVDWDYNRDNPKHLFRPWGFQ 246 (402)
T ss_dssp CSCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTHHHHTTTTSCCSEECTTSCBCTTTTTTSTTCSSSCSSBC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhCccCCeeEEEECCCCCCccccccCCcccccCcCCCC
Confidence 111 1222334433332333333421 144555666677777776656555555421 111111
Q ss_pred -HH---HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCC-CCCCCcc
Q 004888 547 -GL---VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPS-KAPGFLD 620 (725)
Q Consensus 547 -al---~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~-~~g~~-~~~~~le 620 (725)
|. ..+.|.++++++++ ++|++.|+++++++.++.||+++|+++... .+|.+ ...+.++
T Consensus 247 pGH~iE~awlLl~~~~~~~~----------------~~~~~~A~~l~~~~~~~gwd~~~Gg~~~~~d~~g~~~~~~k~~W 310 (402)
T 3gt5_A 247 PGHQTEWAKLLLILDRYIEV----------------EWLVPVARSLFDVAVARSWDAVRGGLCYGFAPDGTICDDDKYFW 310 (402)
T ss_dssp HHHHHHHHHHHHHHHHHCCC----------------TTHHHHHHHHHHHHHHHHBCTTTCSBCSEECTTSCEEECCEEHH
T ss_pred CChHHHHHHHHHHHHHhhCc----------------HHHHHHHHHHHHHHHHhcccCCCCcEEEEEcCCCCeeeCCccee
Confidence 33 45679999999987 679999999999999999999878877653 45543 5568899
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHHH
Q 004888 621 DYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRL 700 (725)
Q Consensus 621 DyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL 700 (725)
+++.+|.|++.||++|||++|+++|+++++++.++|+|++.|+||+.-..+..++...|- .-+.+|+++..||..+++.
T Consensus 311 ~qaEal~a~l~ly~~tgd~~yl~~a~~~~~~~~~~~~D~~~G~W~~~l~~dg~~~~~~k~-~~~K~~YH~~~a~~e~~~~ 389 (402)
T 3gt5_A 311 VQAESLAAAALLATRSGDERYWQWYDRLWAYAWQHMVDHRYGAWYRLLDGDNRKYNDEKS-PAGKTDYHTMGACHEVLNV 389 (402)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTBCTTTCSBCSEECTTSCBCCSCCB-CTTCSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCcCCCCCeEEEEECCCCCCCCCCCC-CCCCCCccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987777666544332 3456899999999888764
Q ss_pred H
Q 004888 701 A 701 (725)
Q Consensus 701 ~ 701 (725)
-
T Consensus 390 l 390 (402)
T 3gt5_A 390 V 390 (402)
T ss_dssp S
T ss_pred h
Confidence 3
No 6
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=99.93 E-value=1.6e-24 Score=238.02 Aligned_cols=302 Identities=13% Similarity=0.019 Sum_probs=215.3
Q ss_pred HHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHcc---CChHHHHHHHHHHHHHHHhcc
Q 004888 341 VLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLT---KDVFYSYICRDILDYLRRDMI 417 (725)
Q Consensus 341 ~~~TL~~ma~gGi~D~v~GGF~RYs~D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t---~d~~y~~vA~~~~~fl~~~m~ 417 (725)
+...|.-.. ++++|+++|||+++..++..++| +||||++||++|++|+.||+++ +++.|+++|+++++||.+.|+
T Consensus 19 ~~~~l~~w~-~~~~D~~~GGf~~~~~~dg~~~~-~~k~l~~nar~l~~~a~a~~~~~~~~~~~~l~~A~~~~~fl~~~~~ 96 (402)
T 1fp3_A 19 LDRVMAFWL-EHSHDREHGGFFTCLGRDGRVYD-DLKYVWLQGRQVWMYCRLYRKLERFHRPELLDAAKAGGEFLLRHAR 96 (402)
T ss_dssp HHHHHHHHH-HHSBCTTTSSBCCCBCTTSCBSC-CCEEHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHhh-ccCCCCCCCCEeeEECCCCCCCC-CccchhhhHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcc
Confidence 444454444 36999999999775444445666 7899999999999999999997 999999999999999999999
Q ss_pred CCCC--ceeeeccCCCccccccccccCcceEEechHHHHHHhhhh--HHHHHHHhc-------ccCCCCcCCCCCCCCCC
Q 004888 418 GPGG--EIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH--AILFKEHYY-------LKPTGNCDLSRMSDPHN 486 (725)
Q Consensus 418 ~~~G--gfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~lg~~--~~l~~~~y~-------l~~~Gn~e~~~~~dp~~ 486 (725)
+++| |||+++|+|+.+.+..+..+.++|++|...|+.+++|+. .+.+.+.+. ..++|.+.. .|+
T Consensus 97 d~~gg~g~~~s~d~dg~~~~~~~~lyd~af~~~a~~~~~~atgd~~~~~~A~~l~~~~~~~~~d~~~G~f~~---~~~-- 171 (402)
T 1fp3_A 97 VAPPEKKCAFVLTRDGRPVKVQRSIFSECFYTMAMNELWRVTAEARYQSEAVDMMDQIVHWVREDPSGLGRP---QLP-- 171 (402)
T ss_dssp SSTTSCCBCSEECTTSCEEECCSSSHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTCGGGGCCC---CCT--
T ss_pred CcCCCCceEEEECCCCCccccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCcccCc---ccc--
Confidence 9874 899999999988777788888999999999999999853 333333333 123343210 000
Q ss_pred CCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCCCCCCcchhhhcHH--HHHHHHHH---HHHHhh
Q 004888 487 EFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNG--LVISSFAR---ASKILK 561 (725)
Q Consensus 487 ~f~g~nvL~~~~~~~~~a~~~g~~~e~~~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNa--l~I~aLa~---A~~vl~ 561 (725)
|...+.++|+ .++.+++. ++.+++
T Consensus 172 ---------------------------------------------------~~~~~~~~~~~m~~~~~~l~l~~l~~~~~ 200 (402)
T 1fp3_A 172 ---------------------------------------------------GAVASESMAVPMMLLCLVEQLGEEDEELA 200 (402)
T ss_dssp ---------------------------------------------------TSCCEEETHHHHHHHHHHHHHHTTCHHHH
T ss_pred ---------------------------------------------------CccCCCCcchHHHHHHHHHHHHHHHHhcC
Confidence 0011223465 34456666 556664
Q ss_pred hhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec-CCCCCCC--CCcchHHHHHH---HHHHHHHH
Q 004888 562 SEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR-NGPSKAP--GFLDDYAFLIS---GLLDLYEF 635 (725)
Q Consensus 562 d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~-~g~~~~~--~~leDyA~li~---aLL~LYe~ 635 (725)
+ .|++.|.++++.+.++ +++++|++...+. ++.+... +..-.+++.|+ .|+.++++
T Consensus 201 ~-----------------~~~~~a~~~~~~~~~~-~~~~~~~~~e~~d~dw~~~~~~~g~~~~pgh~ie~~wlL~~a~~~ 262 (402)
T 1fp3_A 201 G-----------------RYAQLGHWCARRILQH-VQRDGQAVLENVSEDGEELSGCLGRHQNPGHALEAGWFLLRHSSR 262 (402)
T ss_dssp H-----------------HTHHHHHHHHHHHHTT-EETTTTEECSEEETTSCBCCHHHHHEECHHHHHHHHHHHHHHHHH
T ss_pred c-----------------HHHHHHHHHHHHHHHH-hCcCCCeEEEEECCCCCccCCCCCCCCCCCcHHHHHHHHHHHHHH
Confidence 3 4889999999999988 8887787655433 3322111 11233454444 79999999
Q ss_pred cCCHHHHHHHHHHHHHH-HHHccccCCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHhhCCCCchHHHH
Q 004888 636 GSGTKWLVWAIELQNTQ-DELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQ 714 (725)
Q Consensus 636 Tgd~~yL~~A~~L~~~~-~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~t~~~~~~~y~~ 714 (725)
+|++.|++.|+++++.+ .++.||++.|+.+.+...+..++. .- ..+...-.+++.++.+++.|+++||+ +.|.+
T Consensus 263 ~~~~~~l~~A~~~~~~~~~~~~~d~~~gg~~~~~~~~g~~~~-~l-~d~~~~~W~qaea~~a~l~ly~~tgd---~~yl~ 337 (402)
T 1fp3_A 263 SGDAKLRAHVIDTFLLLPFRSGWDADHGGLFYFQDADGLCPT-QL-EWAMKLWWPHSEAMIAFLMGYSESGD---PALLR 337 (402)
T ss_dssp TTCHHHHHHHHHHHTHHHHHHHBCTTTCSBCSCEETTSCCCS-ST-TTTCEEHHHHHHHHHHHHHHHHHHCC---HHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHhccCCCCCEEEeecCCCCccc-cC-cCCCcCcHHHHHHHHHHHHHHHHhCC---HHHHH
Confidence 99999999999999999 999999885665544222222211 00 11223346778899999999999997 78999
Q ss_pred HHHHHHHHh
Q 004888 715 NAEHSLYLR 723 (725)
Q Consensus 715 ~A~~~l~~~ 723 (725)
.|+++...+
T Consensus 338 ~a~~~~~~~ 346 (402)
T 1fp3_A 338 LFYQVAEYT 346 (402)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887664
No 7
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24
Probab=99.90 E-value=1.1e-23 Score=203.15 Aligned_cols=126 Identities=17% Similarity=0.268 Sum_probs=102.4
Q ss_pred ccccccccC-CChhhhcccCCCCccccchHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEE
Q 004888 100 KHTNRLAAE-HSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIK 178 (725)
Q Consensus 100 ~~~NrL~~e-~spyl~~ha~~~V~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~Vk 178 (725)
...|||+.. ++||.+++. ..+++|+++||+++|||||+|+++||+||++|+++||+||+|+++||++||.|+
T Consensus 10 ~~~~~l~~lf~~p~~~~~~-------~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~ 82 (153)
T 2dlx_A 10 KKLTTLADLFRPPIDLMHK-------GSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQ 82 (153)
T ss_dssp CCCCCCCCTTSCCTTTSCC-------SCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEE
T ss_pred chhhHHHHhhCCchhhhcc-------cCHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEE
Confidence 456999999 899987753 445999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCC-CCccccccccCCCCCCCcchHHHHHHHHHHH
Q 004888 179 VDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD-LKPLMGGTYFPPEDKYGRPGFKTILRKVKDA 244 (725)
Q Consensus 179 vD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pd-G~~i~~~tY~p~~~~~~~~~F~~~L~~i~~~ 244 (725)
+|+++ ++ ...+++ .+++.|+|+++|++|+ |+++...++.++ ..|++.|+++.+.
T Consensus 83 ~d~~~-~~-~~~l~~----~y~v~~~P~~~fld~~~G~~l~~~~g~~~------~~fl~~L~~~l~~ 137 (153)
T 2dlx_A 83 VYHDS-EE-GQRYIQ----FYKLGDFPYVSILDPRTGQKLVEWHQLDV------SSFLDQVTGFLGE 137 (153)
T ss_dssp EESSS-HH-HHHHHH----HHTCCSSSEEEEECTTTCCCCEEESSCCH------HHHHHHHHHHHHH
T ss_pred EecCC-Hh-HHHHHH----HcCCCCCCEEEEEeCCCCcEeeecCCCCH------HHHHHHHHHHHHh
Confidence 99964 32 223332 2488999999999998 888755333433 4788877766533
No 8
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*
Probab=99.88 E-value=6.6e-22 Score=219.37 Aligned_cols=245 Identities=10% Similarity=0.038 Sum_probs=186.0
Q ss_pred CcccCCCeEEEEecCCCCC-CCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCC-CceeeeccCC
Q 004888 353 IHDHVGGGFHRYSVDERWH-VPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPG-GEIFSAEDAD 430 (725)
Q Consensus 353 i~D~v~GGF~RYs~D~~W~-vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~-Ggfysa~DAD 430 (725)
..|+. ||+ ++|.+|. +|++|||+++||+||++|+.||+ ++++.|+++|+++++||.+.|++++ ||||+++|+|
T Consensus 27 ~~d~~--GF~--~ld~~g~~~~~~~k~~~~nar~i~~~a~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~GG~~~s~d~d 101 (421)
T 2zbl_A 27 AVVPT--GFG--WLGNKGQIKEEMGTHLWITARMLHVYSVAAS-MGRPGAYDLVDHGIKAMNGALRDKKYGGWYACVNDQ 101 (421)
T ss_dssp GEETT--EEC--CBCTTSCBCGGGCEEHHHHHHHHHHHHHHHH-TTCTTHHHHHHHHHHHHTTTTBCTTTSSBCSEEETT
T ss_pred CcCCC--Ccc--eECCCCCCCCCchhhHHHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHHhccCcCCCeEEEEeCCC
Confidence 57987 785 9999996 68999999999999999999998 9999999999999999999999987 9999999987
Q ss_pred CccccccccccCcceEEechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCC
Q 004888 431 SAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMP 510 (725)
Q Consensus 431 s~~~~~~~~~~EGayY~wt~~Ei~~~lg~~~~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~ 510 (725)
+.+.+
T Consensus 102 g~~~~--------------------------------------------------------------------------- 106 (421)
T 2zbl_A 102 GVVDA--------------------------------------------------------------------------- 106 (421)
T ss_dssp EEEEC---------------------------------------------------------------------------
T ss_pred CCcCC---------------------------------------------------------------------------
Confidence 64211
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCcchhhhcHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHH
Q 004888 511 LEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAAS 590 (725)
Q Consensus 511 ~e~~~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~ 590 (725)
+|. ..-|+++|.++++ ++++++ ++|++.|+++.+
T Consensus 107 ----------------------------~k~-lyd~Af~i~al~~-~~~tg~----------------~~~l~~a~~~~~ 140 (421)
T 2zbl_A 107 ----------------------------SKQ-GYQHFFALLGAAS-AVTTGH----------------PEARKLLDYTIE 140 (421)
T ss_dssp ----------------------------CEE-HHHHHHHHHHHHH-HHTTTC----------------TTHHHHHHHHHH
T ss_pred ----------------------------chh-HHHHHHHHHHHHH-HHHhCC----------------ccHHHHHHHHHH
Confidence 010 1125999999999 899998 679999999999
Q ss_pred HHHHhccccCCCeEEEEec-CCCC-CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccC
Q 004888 591 FIRRHLYDEQTHRLQHSFR-NGPS-KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTT 668 (725)
Q Consensus 591 ~l~~~l~d~~~G~l~~s~~-~g~~-~~~~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~ 668 (725)
++.++++|++.|+++.+.. +++. .....++.+++++.+++.+|++||+++|++.|+++++.+..++.+..+|......
T Consensus 141 ~l~~~~~d~~~Ggf~~~~d~d~~~~~~~~~~n~~m~~~~al~~l~~~tgd~~~~~~A~~~~~~~~~~~~~~~~~~l~~~f 220 (421)
T 2zbl_A 141 VIEKYFWSEEEQMCLESWDEAFSQTEDYRGGNANMHAVEAFLIVYDVTHDKKWLDRALRIASVIIHDVARNGDYRVNEHF 220 (421)
T ss_dssp HHHHHTEETTTTEECCEECTTSCSBCSCEEHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHHCCCCCGGGTTCCCCEE
T ss_pred HHHHHhccCCCCCeeeeecCCCCcccccCCCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhccCCCCchhhhc
Confidence 9999999987788776643 3322 1234566778899999999999999999999999999999999886655432222
Q ss_pred CCCCcccccc-ccC-CCCC-----CCChHHHHHHHHHHHHHhhCCCCc--h-HHHHHHHHHHHHh
Q 004888 669 GEDPSVLLRV-KED-HDGA-----EPSGNSVSVINLVRLASIVAGSKS--D-YYRQNAEHSLYLR 723 (725)
Q Consensus 669 ~~~~~~~~r~-k~~-~D~a-----~PS~Nsv~a~~LlrL~~~t~~~~~--~-~y~~~A~~~l~~~ 723 (725)
.++...+... .++ .+-. .|.+.-..+-.|++++.++++..+ + .|.+.|.++....
T Consensus 221 ~~~~~~~~~~~~dd~~~r~~~~~~~pgh~iE~~wlLl~~~~~~~~~~~~~~~~~l~~A~~l~~~~ 285 (421)
T 2zbl_A 221 DSQWNPIRDYNKDNPAHRFRAYGGTPGAWIEWGRLMLHLHAALEARFETPPAWLLEDAKGLFHAT 285 (421)
T ss_dssp CTTSCBCTTTTTTSTTCSSSCSSBCHHHHHHHHHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHH
T ss_pred CCccccchhccCCCcccccccCCCCCChHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHHHH
Confidence 2233322111 111 1111 355554457789999999942101 3 7999998887654
No 9
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Probab=99.86 E-value=3.1e-21 Score=212.08 Aligned_cols=212 Identities=16% Similarity=0.092 Sum_probs=170.0
Q ss_pred HHHHHH-HHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCccccccccccCcceEEechHHHHHHhhhh
Q 004888 382 QGQLAN-VYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH 460 (725)
Q Consensus 382 NA~Ll~-~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~lg~~ 460 (725)
-+.+.. +|..+|++|+|+.|++++..+.++|..++ +|.||+..+-+....+
T Consensus 115 ~GF~~~~s~~~~y~ltg~~~~~~~~~~aA~~L~~r~-~~~~g~iqsw~~~~~~--------------------------- 166 (397)
T 2zzr_A 115 LGFLYTPSCTAEYRINGDVKALEATIKAADKLMERY-QEKGGFIQAWGELGYK--------------------------- 166 (397)
T ss_dssp HHHHHTTTHHHHHHHHCCHHHHHHHHHHHHHHHTTE-ETTTTEECCSSSTTCG---------------------------
T ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh-CcCCCEEEecccCCCC---------------------------
Confidence 343444 48899999999999999999999999988 7777777654321100
Q ss_pred HHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCCCCCCcc
Q 004888 461 AILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDK 540 (725)
Q Consensus 461 ~~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~e~~~~~l~~~r~kL~~~R~~R~~P~lDdK 540 (725)
+ ++ +.++|
T Consensus 167 --------------~-------------~~--------------------------------------------~~iID- 174 (397)
T 2zzr_A 167 --------------E-------------HY--------------------------------------------RLIID- 174 (397)
T ss_dssp --------------G-------------GC--------------------------------------------EEETT-
T ss_pred --------------C-------------CC--------------------------------------------ceeec-
Confidence 0 00 11223
Q ss_pred hhhhcHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec----CCCCC--
Q 004888 541 VIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR----NGPSK-- 614 (725)
Q Consensus 541 iitsWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~----~g~~~-- 614 (725)
|.|-|.+|++|++++|| ++|++.|++.++++.++++++ +|+++|+++ +|.+.
T Consensus 175 -----~~mni~~L~~A~~~~gd----------------~~y~~~A~~ha~~~l~~~~r~-dgs~~h~~~~d~~~G~~~~~ 232 (397)
T 2zzr_A 175 -----CLLNIQLLFFAYEQTGD----------------EKYRQVAVNHFYASANNVVRD-DSSAFHTFYFDPETGEPLKG 232 (397)
T ss_dssp -----HHHHTHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHHTBCT-TSCBCSEEEECTTTCCEEEE
T ss_pred -----hHhHHHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHHhCcCC-CCCeEEEEEeeCCCCCcccC
Confidence 47789999999999998 899999999999999999886 578999976 67763
Q ss_pred --CCCCcchH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCC
Q 004888 615 --APGFLDDY------AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAE 686 (725)
Q Consensus 615 --~~~~leDy------A~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~ 686 (725)
.+|+++|| |++|.|++++|++|||++||+.|+++++.+.++|. .+++.||++..++ ++.+++ |
T Consensus 233 ~t~qGy~dds~WaRGqAw~i~gl~~lY~~T~d~~yL~~A~~la~~~l~~~~-~d~~pywdt~~~~--~~~~~~---D--- 303 (397)
T 2zzr_A 233 VTRQGYSDESSWARGQAWGIYGIPLSYRKMKDYQQIILFKGMTNYFLNRLP-EDKVSYWDLIFTD--GSGQPR---D--- 303 (397)
T ss_dssp ECTTSSSTTSCBHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCC-TTSCCBSBTTCCT--TSCCCB---C---
T ss_pred CcccccCcchhhHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhH-HhCCccccCCCCC--CCCCcC---C---
Confidence 78999996 99999999999999999999999999999999993 2344588876543 334443 3
Q ss_pred CChHHHHHHHHHHHHHhhCCCCchH--HHHHHHHHHHHhh
Q 004888 687 PSGNSVSVINLVRLASIVAGSKSDY--YRQNAEHSLYLRQ 724 (725)
Q Consensus 687 PS~Nsv~a~~LlrL~~~t~~~~~~~--y~~~A~~~l~~~~ 724 (725)
||+||++|.+|++|+.++++..... |++.|+++|+.+.
T Consensus 304 ~Sa~aiaA~~Ll~L~~~~~~~~~~~~~Y~~~A~~~l~~l~ 343 (397)
T 2zzr_A 304 TSATATAVCGIHEMLKYLPEVDPDKETYKYAMHTMLRSLI 343 (397)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999998533356 9999999999875
No 10
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Probab=99.82 E-value=1.2e-19 Score=198.64 Aligned_cols=152 Identities=20% Similarity=0.184 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec----CCCC----CCCCC
Q 004888 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR----NGPS----KAPGF 618 (725)
Q Consensus 547 al~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~----~g~~----~~~~~ 618 (725)
-++|.+|++|++++|| ++|++.|++.++++.++++++ +|+++|+++ +|.+ ..+|+
T Consensus 151 mmni~~L~~A~~~~gd----------------~~y~~~A~~~a~~~l~~~~r~-dgs~~h~~~~D~~tG~~~~~~t~qG~ 213 (377)
T 2ahf_A 151 LLNLPLLLWAGEQTGD----------------PEYRRVAEAHALKSRRFLVRG-DDSSYHTFYFDPENGNAIRGGTHQGN 213 (377)
T ss_dssp GGGHHHHHHHHHHHCC----------------THHHHHHHHHHHHHHHHTBBT-TSCBCSEEEECTTTCCEEEEECSSSS
T ss_pred HHHHHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHHhCcCC-CCCeEEEEEeeCCCCCeeeCCCcCCc
Confidence 6789999999999998 789999999999999999886 578999977 7877 77899
Q ss_pred cchH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCChHHH
Q 004888 619 LDDY------AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSV 692 (725)
Q Consensus 619 leDy------A~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv 692 (725)
++|| |++|.|++++|++|+|++||+.|+++++.+.++| ..+++.||++..+ .++.+++ .||+||+
T Consensus 214 ~dds~WaRGqAw~i~gl~~ly~~T~d~~yL~~A~~la~~~l~~~-~~d~~pywd~~~~--~~~~~~~------d~Sa~ai 284 (377)
T 2ahf_A 214 TDGSTWTRGQAWGIYGFALNSRYLGNADLLETAKRMARHFLARV-PEDGVVYWDFEVP--QEPSSYR------DSSASAI 284 (377)
T ss_dssp STTSCBHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC-CTTSSCBSBTTSC--CCTTSCB------CHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHhh-HHhCCcccccCCC--ccCCCcc------CCCHHHH
Confidence 9996 9999999999999999999999999999999999 3334458887642 2333443 3999999
Q ss_pred HHHHHHHHHHhhCCC--CchHHHHHHHHHHHHhh
Q 004888 693 SVINLVRLASIVAGS--KSDYYRQNAEHSLYLRQ 724 (725)
Q Consensus 693 ~a~~LlrL~~~t~~~--~~~~y~~~A~~~l~~~~ 724 (725)
+|.+|++|+.+++.. .++.|++.|+++|+.+.
T Consensus 285 aA~~Ll~L~~~~~~~~~~~~~Y~~~A~~~l~~l~ 318 (377)
T 2ahf_A 285 TACGLLEIASQLDESDPERQRFIDAAKTTVTALR 318 (377)
T ss_dssp HHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccchHHHHHHHHHHHHHHH
Confidence 999999999999611 13679999999999874
No 11
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A
Probab=99.82 E-value=3.5e-20 Score=178.34 Aligned_cols=122 Identities=16% Similarity=0.264 Sum_probs=100.5
Q ss_pred CCCCccccchHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHH
Q 004888 118 HNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQA 197 (725)
Q Consensus 118 ~~~V~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~ 197 (725)
...|+|..++++|+++|++++|||||+|+++||++|+.|+..+++++++.+.++.+||.|+||.+ .+++...
T Consensus 24 ~~~i~W~~~~~~al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e-~~~~~~~------- 95 (151)
T 3ph9_A 24 GDDITWVQTYEEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHE-TTDKNLS------- 95 (151)
T ss_dssp CTTSCCCSSHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSC-CSCGGGC-------
T ss_pred cCCCcchhCHHHHHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCC-chhhHhh-------
Confidence 56799999899999999999999999999999999999999999999999999889999999954 4444332
Q ss_pred hcCCCCcCcEEEecCCCCccccc-cccC-CCCCCCcchHHHHHHHHHHHHhhc
Q 004888 198 LYGGGGWPLSVFLSPDLKPLMGG-TYFP-PEDKYGRPGFKTILRKVKDAWDKK 248 (725)
Q Consensus 198 ~~g~~G~P~~vfl~pdG~~i~~~-tY~p-~~~~~~~~~F~~~L~~i~~~~~~~ 248 (725)
+++.|+|+++|++|+|+++... |+.+ +.-.+...+|.++|+.+.++++.-
T Consensus 96 -~~v~~~PT~~f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~al~~~ 147 (151)
T 3ph9_A 96 -PDGQYVPRIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKALRLI 147 (151)
T ss_dssp -TTCCCSSEEEEECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHHHSCC
T ss_pred -cCCCCCCEEEEECCCCCEEEEEeCCcCCcccccchhhHHHHHHHHHHHHHHH
Confidence 3778999999999999998752 3311 111234458999999999887643
No 12
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=99.79 E-value=6.5e-19 Score=194.20 Aligned_cols=153 Identities=12% Similarity=0.036 Sum_probs=130.9
Q ss_pred cHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC-CCCCCcchHH
Q 004888 545 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS-KAPGFLDDYA 623 (725)
Q Consensus 545 WNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~-~~~~~leDyA 623 (725)
.||+||++++.|++++|+ ++|++.|+++++||.++++|+++|+++++.++|++ ...+.++|||
T Consensus 53 ~n~r~i~~~a~a~~~~g~----------------~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~dG~~~~~~~~lyd~A 116 (402)
T 3gt5_A 53 SSTRFVFNYAMAYLQFGT----------------AEYLDAVHHGLSYVRDVHRNPATGGYAWTLCDDRVEDDTNHCYGLA 116 (402)
T ss_dssp HHHHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHTTBCTTTSCBCSEEETTEEEECCEEHHHHH
T ss_pred HHHHHHHHHHHHHHhhCC----------------hHHHHHHHHHHHHHHHhCccCCCCcEEEEeeCCCCCcCCcchHHHH
Confidence 489999999999999987 78999999999999999999876889988888876 4679999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHh
Q 004888 624 FLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASI 703 (725)
Q Consensus 624 ~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~ 703 (725)
|+|.|+++ |.+||+++|++.|+++++.+.++|+|+++|+|+.+...+.. + + +...+++|++++.++++|+.+
T Consensus 117 f~i~al~~-~~~tgd~~~l~~A~~l~~~i~~~f~d~~~G~~~~~~~~~~~-~-~-----~~~~~n~~m~l~eall~L~~~ 188 (402)
T 3gt5_A 117 FVMLAYSC-GLKVGIKQAREWMDETWCLLERHFWDAEYGLYKDEADAQWN-F-T-----RYRGQNANMHMCEAMLAAYEA 188 (402)
T ss_dssp HHHHHHHH-HHHTTCTTHHHHHHHHHHHHHHHTEETTTTEECCEECTTCC-B-C-----SCEEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHhCChhHHHHHHHHHHHHHHHhcCCcCCCchhhhCCCCC-C-C-----CCCCCCHHHHHHHHHHHHHHh
Confidence 99999999 77899999999999999999999999998999865433322 1 1 112344455689999999999
Q ss_pred hCCCCchHHHHHHHHHHHHhh
Q 004888 704 VAGSKSDYYRQNAEHSLYLRQ 724 (725)
Q Consensus 704 t~~~~~~~y~~~A~~~l~~~~ 724 (725)
|++ +.|+++|++++..+.
T Consensus 189 tgd---~~~~~~a~~l~~~~~ 206 (402)
T 3gt5_A 189 SGE---QRYLERALVLADRIT 206 (402)
T ss_dssp HCC---HHHHHHHHHHHHHHH
T ss_pred hCC---HHHHHHHHHHHHHHH
Confidence 997 789999999998774
No 13
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=99.76 E-value=5.6e-18 Score=184.63 Aligned_cols=247 Identities=12% Similarity=0.016 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHHhccCCCCceeeeccCCCccccccccccCcceEEechHHHHHH-hhhh--HHHHHHHhcccCCCCcCCC
Q 004888 403 YICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDI-LGEH--AILFKEHYYLKPTGNCDLS 479 (725)
Q Consensus 403 ~vA~~~~~fl~~~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~-lg~~--~~l~~~~y~l~~~Gn~e~~ 479 (725)
....+++.|......++.||||...|.|..+.+..|..+-.+--+|...+...+ +++. .+++.+.+.
T Consensus 15 ~l~~~~l~fw~~~~~D~~GGf~~~~~~d~~~~~~eK~l~~nar~i~~~a~a~~~~~~~~~~~~~A~~~~~---------- 84 (388)
T 2gz6_A 15 ALLNDVLPFWENHSLDSEGGYFTCLDRQGKVYDTDKFIWLQNRQVWTFSMLCNQLEKRENWLKIARNGAK---------- 84 (388)
T ss_dssp HHHHTHHHHHHHHCBCTTSSBCCEEBTTSCEEECCEEHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH----------
T ss_pred HHHHhHHHHHHhcCCCCCCCEEeEECCCCCcCCcchhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH----------
Confidence 456789999988899988899887777765433334333344444555555555 3421 122222111
Q ss_pred CCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhc------cCCCCCCCcchhhhcHHHHHHHH
Q 004888 480 RMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRS------KRPRPHLDDKVIVSWNGLVISSF 553 (725)
Q Consensus 480 ~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~e~~~~~l~~~r~kL~~~R~------~R~~P~lDdKiitsWNal~I~aL 553 (725)
-+++.+.+... .+--..+|++..+.+||++|.||
T Consensus 85 ----------------------------------------~l~~~~~~~~Gg~~~~~d~dg~~~~~~~~~~~~af~i~al 124 (388)
T 2gz6_A 85 ----------------------------------------FLAQHGRDDEGNWYFALTRGGEPLVQPYNIFSDCFAAMAF 124 (388)
T ss_dssp ----------------------------------------HHHHHSBCTTSCBCSEECTTSCBCCCCCCHHHHHHHHHHH
T ss_pred ----------------------------------------HHHHhcCCCCCCEEEEEcCCCCcccCCcchHHHHHHHHHH
Confidence 11111111000 00011234456678999999999
Q ss_pred HHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHH
Q 004888 554 ARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLY 633 (725)
Q Consensus 554 a~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~leDyA~li~aLL~LY 633 (725)
+++++++|+ ++|++.|++++++|.++++++ .|.+.+.+.++.+ ..+ ++++++++.+++.||
T Consensus 125 ~~~y~~tg~----------------~~~l~~A~~~~~~i~~~~~d~-~g~~~~~~~~~~~-~~~-~~~~~~~~~all~l~ 185 (388)
T 2gz6_A 125 SQYALASGE----------------EWAKDVAMQAYNNVLRRKDNP-KGKYTKTYPGTRP-MKA-LAVPMILANLTLEME 185 (388)
T ss_dssp HHHHHHHCC----------------HHHHHHHHHHHHHHHTC---------------CCC-CEE-THHHHHHHHHHHHTG
T ss_pred HHHHHHhCC----------------HHHHHHHHHHHHHHHHHhcCC-CcccCcccCCCCC-CCC-CCHHHHHHHHHHHHH
Confidence 999999998 789999999999999999875 4544444444432 333 889999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHhhCCCCchHHH
Q 004888 634 EFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYR 713 (725)
Q Consensus 634 e~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~t~~~~~~~y~ 713 (725)
++|||++|++.|+++++.+.++|+|+++|++......++.++ .++..|...|++|+.++.+|++++.+||+ +.|+
T Consensus 186 ~~t~d~~~~~~A~~~~~~~~~~~~~~~~g~~~e~~~~~w~~~--~~~~~~~~~pgh~~e~a~lL~~~~~~tgd---~~~~ 260 (388)
T 2gz6_A 186 WLLPQETLENVLAATVQEVMGDFLDQEQGLMYENVAPDGSHI--DCFEGRLINPGHGIEAMWFIMDIARRKND---SKTI 260 (388)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHTTEETTTTEECSEECTTSCCC--CSTTTTEECHHHHHHHHHHHHHHHHHTTC---HHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCC--CCcccCcCCCCHHHHHHHHHHHHHHHcCC---HHHH
Confidence 999999999999999999999999998888633333333332 33446778999999999999999999997 7899
Q ss_pred HHHHHHHHHh
Q 004888 714 QNAEHSLYLR 723 (725)
Q Consensus 714 ~~A~~~l~~~ 723 (725)
+.|++++..+
T Consensus 261 ~~A~~~~~~~ 270 (388)
T 2gz6_A 261 NQAVDVVLNI 270 (388)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998865
No 14
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=99.75 E-value=5.2e-18 Score=163.83 Aligned_cols=127 Identities=17% Similarity=0.292 Sum_probs=99.5
Q ss_pred cCCCCccccchHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcch---------
Q 004888 117 AHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDV--------- 187 (725)
Q Consensus 117 a~~~V~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~--------- 187 (725)
......|....+++++.|+.+||||||+|+++||++|+.|+.++|+++++.+.++++|+.|+||.++.+++
T Consensus 26 ~~~~~~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~ 105 (172)
T 3f9u_A 26 TNEVHAKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMEN 105 (172)
T ss_dssp --CCCCCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEET
T ss_pred CcccccchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhc
Confidence 34455677677999999999999999999999999999999999999999999998999999999877644
Q ss_pred ---------HHHHHHHHHHhcCCCCcCcEEEecCCCCcccc-ccccCCCCCCCcchHHHHHHHHHHHHhhc
Q 004888 188 ---------DKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG-GTYFPPEDKYGRPGFKTILRKVKDAWDKK 248 (725)
Q Consensus 188 ---------~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~~-~tY~p~~~~~~~~~F~~~L~~i~~~~~~~ 248 (725)
...........+++.|+|+++|+|++|+++.. .+|.+. .+.|.+.|+++.+.++++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~~~G~~~~-----~~~l~~~l~~~l~~~~~~ 171 (172)
T 3f9u_A 106 GTERTLRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPLNKSYAYDED-----ISKYINFLQTGLENYRKE 171 (172)
T ss_dssp TEEEEEEEHHHHHHHHHHHHHSCCCSSEEEEECTTSCBSSCCBCSCCC-----HHHHHHHHHHHHHHHHHT
T ss_pred chhhhhhhhhhhhhHHHHHHcCCCCcceEEEECCCCCEEeeccCCCCC-----HHHHHHHHHHHHHHhhcc
Confidence 11111111123489999999999999999875 355551 237888888888777653
No 15
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua}
Probab=99.73 E-value=4.6e-16 Score=168.77 Aligned_cols=240 Identities=16% Similarity=0.095 Sum_probs=180.4
Q ss_pred HHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 004888 315 IQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFS 394 (725)
Q Consensus 315 l~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~ma~gGi~D~v~GGF~RYs~D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~ 394 (725)
+..|..++..++ ++..++++.++++.+.. ..+|.+ + ...+-|+|.++.++.+||+
T Consensus 52 ~~~l~d~~~~tg-------d~~y~~~a~~~~~~~~~-----~~~~~~----------~---~~~~DD~a~~~la~~~aye 106 (349)
T 3k7x_A 52 VEVRLDAYLRTK-------KQADLEVAEKTYLHNKN-----RNGGTL----------I---HDFYDDMLWNALAAYRLYK 106 (349)
T ss_dssp HHHHHHHHHHHC-------CHHHHHHHHHHHHHHHH-----HTTSSS----------C---CSBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-------CHHHHHHHHHHHHHHHh-----cCCCCC----------C---ccCccHHHHHHHHHHHHHH
Confidence 455566666554 47888999998887754 112222 1 1235679999999999999
Q ss_pred ccCChHHHHHHHHHHHHHHHhccCC--CCceeeeccCCCccccccccccCcceEEechHHHHHHhhhhHHHHHHHhcccC
Q 004888 395 LTKDVFYSYICRDILDYLRRDMIGP--GGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKP 472 (725)
Q Consensus 395 ~t~d~~y~~vA~~~~~fl~~~m~~~--~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~lg~~~~l~~~~y~l~~ 472 (725)
+|+++.|++.|+++.+++....+++ .|||+|..+.+.
T Consensus 107 ~t~~~~yL~~A~~l~~~l~~~~wd~~~gGGi~W~~~~~~----------------------------------------- 145 (349)
T 3k7x_A 107 ATGKSIYLEDAQLVWQDLVDTGWNDIMGGGFAWRRPQMY----------------------------------------- 145 (349)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHTBCSGGGSCBEEETTEEE-----------------------------------------
T ss_pred HHCCchHHHHHHHHHHHHHHhCCCCCCCCceEecCCCcc-----------------------------------------
Confidence 9999999999999999994334555 388988532100
Q ss_pred CCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCCCCCCcchhhhcHHHHHHH
Q 004888 473 TGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISS 552 (725)
Q Consensus 473 ~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~e~~~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal~I~a 552 (725)
.+| +| -|++++.+
T Consensus 146 -----------------~kn------------------------------------------------ai--sN~~~~~~ 158 (349)
T 3k7x_A 146 -----------------YKN------------------------------------------------TP--VNAPFIIL 158 (349)
T ss_dssp -----------------EEE------------------------------------------------HH--HHHHHHHH
T ss_pred -----------------ccc------------------------------------------------hh--hHHHHHHH
Confidence 011 11 38999999
Q ss_pred HHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec---CCCCC-CCCCcchHHHHHHH
Q 004888 553 FARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR---NGPSK-APGFLDDYAFLISG 628 (725)
Q Consensus 553 La~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~---~g~~~-~~~~leDyA~li~a 628 (725)
++++++++|| ++|++.|+++++|+.++++|++ |.++.... +|... ...+..+|+++|.|
T Consensus 159 la~l~~~tgd----------------~~Yl~~A~~~~~w~~~~l~d~~-g~v~Dg~~~~~~g~~~~~~~~tYnqg~~l~g 221 (349)
T 3k7x_A 159 SCWLYNELNE----------------TKYLEWAMKTYEWQTKVLVRED-GFVEDGINRLEDGTIDYEWKFTYNQGVYIGA 221 (349)
T ss_dssp HHHHHHHHCC----------------HHHHHHHHHHHHHHHHHHBCTT-SCBCCEECTTSSSCBCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHhCC----------------HHHHHHHHHHHHHHHhcCCCCC-CeEecCCccCCCCccCCcCeeeHHHHHHHHH
Confidence 9999999998 7899999999999999999976 66654422 23222 24688899999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHhhCCCC
Q 004888 629 LLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSK 708 (725)
Q Consensus 629 LL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~t~~~~ 708 (725)
++.||++|||++||+.|.+|++.+.++|+. +|-.++ +..++..||.+++++.+|.+|+.++..
T Consensus 222 ~~~LY~~T~d~~yl~~a~~l~~~~~~~f~~--~gi~~~-------------~~~~~D~~sFkgi~~r~L~~l~~~~p~-- 284 (349)
T 3k7x_A 222 NLELYRITKEAIYLDTANKTAAISLKELTE--DGIFKD-------------EGNGGDEGLFKGIFYRYFTDLIEETAN-- 284 (349)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHHHEE--TTEECC-------------CCSSSGGGGHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHHHHhcc--CCcccC-------------CCCCccHHHHHHHHHHHHHHHHHHCCh--
Confidence 999999999999999999999999999973 443332 112456799999999999999999986
Q ss_pred chHHHHHHHHHHHH
Q 004888 709 SDYYRQNAEHSLYL 722 (725)
Q Consensus 709 ~~~y~~~A~~~l~~ 722 (725)
+.|+...+...++
T Consensus 285 -~~~~~~l~~sa~a 297 (349)
T 3k7x_A 285 -KTYRDFVLNSCQI 297 (349)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHH
Confidence 5777766655443
No 16
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=99.72 E-value=9.9e-18 Score=160.09 Aligned_cols=138 Identities=17% Similarity=0.263 Sum_probs=108.5
Q ss_pred CcccccccccCCChhhhcccCCCCccccchHHHHHHHhhcCCcEEEEEe-ccCChhhHhhhhhccCCHHHHHHHhcCcEE
Q 004888 98 RNKHTNRLAAEHSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLNDWFVS 176 (725)
Q Consensus 98 ~~~~~NrL~~e~spyl~~ha~~~V~W~~~~~eAl~~Ak~e~KpI~l~~g-~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~ 176 (725)
++...||+..+.|+++++.+...++| ....++++.++.+||||+|+|+ ++||++|+.|....++++++.+..+.+|+.
T Consensus 8 ~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~ 86 (154)
T 2ju5_A 8 HSAARRRASGENLQQTRPIAAANLQW-ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHM 86 (154)
T ss_dssp ---CHHHHCCCCSSCCCSSCCCCCCE-ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEE
T ss_pred hHHHHhhhhhhcchhhhhcccCCCCC-CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEE
Confidence 34677999999999999999999999 6679999999999999999998 999999999999999999999988889999
Q ss_pred EEEcCCCCcchHHH----HHHHHHHhcCCCCcCcEEEecCCCCccccccccCCCCCCCcchHHHHHHHH
Q 004888 177 IKVDREERPDVDKV----YMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKV 241 (725)
Q Consensus 177 VkvD~ee~pd~~~~----y~~~~q~~~g~~G~P~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i 241 (725)
|+||.++.+.+... -.... ..+++.|+|+++|+|++|+++...++.|.. .+.|.+.|+++
T Consensus 87 v~vd~~~~~~~~~~~~~~~~~l~-~~~~v~~~Pt~~~~d~~G~~~~~~G~~~~~----~~~l~~~l~~~ 150 (154)
T 2ju5_A 87 VEVDFPQKNHQPEEQRQKNQELK-AQYKVTGFPELVFIDAEGKQLARMGFEPGG----GAAYVSKVKSA 150 (154)
T ss_dssp EEEECCSSCCCCHHHHHHHHHHH-HHTTCCSSSEEEEECTTCCEEEEECCCTTC----HHHHHHHHHHH
T ss_pred EEecCccccCCChhhHhhHHHHH-HHcCCCCCCEEEEEcCCCCEEEEecCCCCC----HHHHHHHHHHH
Confidence 99999876522100 01112 234899999999999999998643555322 23556555544
No 17
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=99.56 E-value=5.8e-15 Score=136.03 Aligned_cols=110 Identities=21% Similarity=0.410 Sum_probs=87.3
Q ss_pred ccchHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcC---CCCcchHHHHHHHHHHhcC
Q 004888 124 FAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDR---EERPDVDKVYMTYVQALYG 200 (725)
Q Consensus 124 ~~~~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~---ee~pd~~~~y~~~~q~~~g 200 (725)
....+++++.|++++|||+|.|+++||++|+.|.. .|.++++++.++++++.++||. ++.+++.+.| +
T Consensus 15 ~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~-~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~--------~ 85 (133)
T 3fk8_A 15 WTQVKKALAAGKRTHKPTLLVFGANWCTDCRALDK-SLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAY--------G 85 (133)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHH-HHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHT--------T
T ss_pred HhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH-HhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHh--------C
Confidence 34459999999999999999999999999999987 6999999999988999999999 6667666555 8
Q ss_pred C---CCcCcEEEecCCCCcccc--ccccCCCCCCCcchHHHHHHHHH
Q 004888 201 G---GGWPLSVFLSPDLKPLMG--GTYFPPEDKYGRPGFKTILRKVK 242 (725)
Q Consensus 201 ~---~G~P~~vfl~pdG~~i~~--~tY~p~~~~~~~~~F~~~L~~i~ 242 (725)
+ .|+|+++|++++|+++.. ++.++.....+...+.+.|+++.
T Consensus 86 v~~~~~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l~ 132 (133)
T 3fk8_A 86 DPIQDGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKIT 132 (133)
T ss_dssp CGGGGCSSEEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred CccCCccceEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHHhc
Confidence 8 899999999999998854 22333322334445666666553
No 18
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}
Probab=99.25 E-value=1.6e-15 Score=139.10 Aligned_cols=108 Identities=27% Similarity=0.413 Sum_probs=87.7
Q ss_pred CCccccchHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCC--CCcchHHHHHHHHHH
Q 004888 120 PVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE--ERPDVDKVYMTYVQA 197 (725)
Q Consensus 120 ~V~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~e--e~pd~~~~y~~~~q~ 197 (725)
.|+|..+ +++++.|+.++|||+|.|+++||++|+.|....+.++++++.++.+++.++||.+ +.+++.+.|
T Consensus 2 ~i~w~~~-~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~------ 74 (130)
T 2lst_A 2 SLRWYPY-PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRY------ 74 (130)
Confidence 4789999 9999999999999999999999999999999999999999999888999999984 445555554
Q ss_pred hcCCCCcCcEEEecCC-CCc--ccc-ccccCCCCCCCcchHHHHHHHHH
Q 004888 198 LYGGGGWPLSVFLSPD-LKP--LMG-GTYFPPEDKYGRPGFKTILRKVK 242 (725)
Q Consensus 198 ~~g~~G~P~~vfl~pd-G~~--i~~-~tY~p~~~~~~~~~F~~~L~~i~ 242 (725)
++.|+|+++|++|+ |++ +.. .++.+++ .|.+.|+++.
T Consensus 75 --~v~~~Pt~~~~d~~~G~~~~~~~~~G~~~~~------~l~~~l~~~~ 115 (130)
T 2lst_A 75 --RVPGTPTFVFLVPKAGAWEEVGRLFGSRPRA------EFLKELRQVC 115 (130)
Confidence 78899999999975 887 543 2444443 4555555443
No 19
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=99.46 E-value=1.1e-13 Score=126.68 Aligned_cols=92 Identities=24% Similarity=0.342 Sum_probs=77.3
Q ss_pred CCccc-cchHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCC--CcchHHHHHHHHH
Q 004888 120 PVDWF-AWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE--RPDVDKVYMTYVQ 196 (725)
Q Consensus 120 ~V~W~-~~~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee--~pd~~~~y~~~~q 196 (725)
.+.|. ...+++++.++.++|||+|.|+++||++|+.|....+.++++.+.++.+++.++||.++ .+++.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~------ 81 (130)
T 2kuc_A 8 GIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKK------ 81 (130)
T ss_dssp CCCCBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHH------
T ss_pred CCCcccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHH------
Confidence 35552 23488999999999999999999999999999999999999999999899999999984 3344333
Q ss_pred HhcCCCCcCcEEEecCCCCcccc
Q 004888 197 ALYGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 197 ~~~g~~G~P~~vfl~pdG~~i~~ 219 (725)
+++.++|+++|++++|+++..
T Consensus 82 --~~v~~~Pt~~~~d~~G~~~~~ 102 (130)
T 2kuc_A 82 --YGVHAYPTLLFINSSGEVVYR 102 (130)
T ss_dssp --TTCCSSCEEEEECTTSCEEEE
T ss_pred --cCCCCCCEEEEECCCCcEEEE
Confidence 388999999999999998864
No 20
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus}
Probab=99.46 E-value=3.9e-13 Score=153.66 Aligned_cols=145 Identities=16% Similarity=0.213 Sum_probs=117.7
Q ss_pred hcHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHH
Q 004888 544 SWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYA 623 (725)
Q Consensus 544 sWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~leDyA 623 (725)
.-|++||.|||.|++++.+.. ...++||+.|+++.+|+.++.. .+ +++|. .+++|||
T Consensus 250 ~~agl~aAALA~Asrvf~d~~-----------~~a~~~L~aA~~a~~fa~~~~~-----~y---~~~g~---~~~~De~- 306 (586)
T 3h7l_A 250 QGGGVAIAALAAASRLGVHGE-----------YDQQKYRNAAENGYWHLKEHNT-----QY---LNDGE---ENIIDEY- 306 (586)
T ss_dssp GTHHHHHHHHHHHTTSSSCSS-----------SCHHHHHHHHHHHHHHHHHHHH-----HH---STTSC---CCHHHHH-
T ss_pred CcHHHHHHHHHHHhcccCCCC-----------cChHHHHHHHHHHHHHHHhcCc-----cc---cCCCC---ccchhHH-
Confidence 348999999999999954421 1127899999999999988742 11 13343 5889999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHh
Q 004888 624 FLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASI 703 (725)
Q Consensus 624 ~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~ 703 (725)
+++.|+++||++|||+.||+.|.++.+.+.++|++.+.|+||++..++ |.|+.+|++ .|++++.+|++|..+
T Consensus 307 ~~~WAA~eLy~ATgd~~YL~~a~~~a~~l~~~~~~~~~~g~~w~~~d~-----~~r~~~d~a---~~gl~~iaLl~l~~~ 378 (586)
T 3h7l_A 307 CALLASVELFKATKETRYLEESRLWAQRLVARQMSDEQIQHFWSANQD-----GSRPYFHAA---EAGLPTIALCEYLAI 378 (586)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTEECCSSCSSEEBSSSS-----SSSBCCCTT---TTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccCCccCCCcCCCccc-----CCccccccc---ccHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999988888899887654 577888875 799999999999999
Q ss_pred hCCCCchHHHHHHHHHHHH
Q 004888 704 VAGSKSDYYRQNAEHSLYL 722 (725)
Q Consensus 704 t~~~~~~~y~~~A~~~l~~ 722 (725)
+++ ..++++|+++|..
T Consensus 379 ~~d---~~~~~~a~~~i~~ 394 (586)
T 3h7l_A 379 EDD---SVQTESVKCIVNR 394 (586)
T ss_dssp CCS---TTTTHHHHHHHHH
T ss_pred cCC---hHHHHHHHHHHHH
Confidence 986 3466666666654
No 21
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua}
Probab=99.41 E-value=5.8e-12 Score=136.56 Aligned_cols=148 Identities=15% Similarity=0.012 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccC-CCeEEEEecCCCCCCCCCcchHHHH
Q 004888 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQ-THRLQHSFRNGPSKAPGFLDDYAFL 625 (725)
Q Consensus 547 al~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~-~G~l~~s~~~g~~~~~~~leDyA~l 625 (725)
++++.++.++++++++ ++|++.|+++++++....||+. +|++++.... ....-.-..+.+
T Consensus 95 a~~~la~~~aye~t~~----------------~~yL~~A~~l~~~l~~~~wd~~~gGGi~W~~~~---~~~knaisN~~~ 155 (349)
T 3k7x_A 95 LWNALAAYRLYKATGK----------------SIYLEDAQLVWQDLVDTGWNDIMGGGFAWRRPQ---MYYKNTPVNAPF 155 (349)
T ss_dssp HHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHHTBCSGGGSCBEEETTE---EEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC----------------chHHHHHHHHHHHHHHhCCCCCCCCceEecCCC---ccccchhhHHHH
Confidence 8888999999999998 8999999999999954556653 6778765311 011112267899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCC--CCCCChHHHHHHHHHHHHHh
Q 004888 626 ISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHD--GAEPSGNSVSVINLVRLASI 703 (725)
Q Consensus 626 i~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D--~a~PS~Nsv~a~~LlrL~~~ 703 (725)
+.+++.||++|||++|+++|+++++.+.++++|++ |.+|+...... .-..+ ..-....+++...+..|++.
T Consensus 156 ~~~la~l~~~tgd~~Yl~~A~~~~~w~~~~l~d~~-g~v~Dg~~~~~------~g~~~~~~~~tYnqg~~l~g~~~LY~~ 228 (349)
T 3k7x_A 156 IILSCWLYNELNETKYLEWAMKTYEWQTKVLVRED-GFVEDGINRLE------DGTIDYEWKFTYNQGVYIGANLELYRI 228 (349)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHBCTT-SCBCCEECTTS------SSCBCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCC-CeEecCCccCC------CCccCCcCeeeHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999987 77887432110 00011 23445788999999999999
Q ss_pred hCCCCchHHHHHHHHHHHHh
Q 004888 704 VAGSKSDYYRQNAEHSLYLR 723 (725)
Q Consensus 704 t~~~~~~~y~~~A~~~l~~~ 723 (725)
|++ +.|+++|++++..+
T Consensus 229 T~d---~~yl~~a~~l~~~~ 245 (349)
T 3k7x_A 229 TKE---AIYLDTANKTAAIS 245 (349)
T ss_dssp HCC---HHHHHHHHHHHHHH
T ss_pred hCc---HHHHHHHHHHHHHH
Confidence 997 78999999998765
No 22
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=99.39 E-value=3e-13 Score=125.53 Aligned_cols=103 Identities=21% Similarity=0.280 Sum_probs=77.1
Q ss_pred hHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCc
Q 004888 127 GEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (725)
Q Consensus 127 ~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~ 206 (725)
.++.++.++ +|||+|.|+++||++|+.|+...|+++++++.++ +++.++||.++..+-.... .+ .+++.|+|+
T Consensus 22 ~~~~l~~~~--~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~-~~~~~~vd~~~~~~~~~~l---~~-~~~v~~~Pt 94 (134)
T 2fwh_A 22 LNQALVEAK--GKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-DTVLLQANVTANDAQDVAL---LK-HLNVLGLPT 94 (134)
T ss_dssp HHHHHHHHT--TSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-TSEEEEEECTTCCHHHHHH---HH-HTTCCSSSE
T ss_pred HHHHHHHhc--CCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc-CcEEEEEeCCCCcchHHHH---HH-HcCCCCCCE
Confidence 345555443 9999999999999999999999999999999886 5999999997654332222 22 248999999
Q ss_pred EEEecCCCCcc--cc-ccccCCCCCCCcchHHHHHHHHH
Q 004888 207 SVFLSPDLKPL--MG-GTYFPPEDKYGRPGFKTILRKVK 242 (725)
Q Consensus 207 ~vfl~pdG~~i--~~-~tY~p~~~~~~~~~F~~~L~~i~ 242 (725)
++|++++|+++ .. .++.+++ .|.+.|+++.
T Consensus 95 ~~~~d~~G~~v~~~~~~G~~~~~------~l~~~l~~~~ 127 (134)
T 2fwh_A 95 ILFFDGQGQEHPQARVTGFMDAE------TFSAHLRDRQ 127 (134)
T ss_dssp EEEECTTSCBCGGGCBCSCCCHH------HHHHHHHHC-
T ss_pred EEEECCCCCEeeeeeeeeccCHH------HHHHHHHhcC
Confidence 99999999997 22 3455543 5666666543
No 23
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Probab=99.33 E-value=6.2e-11 Score=129.67 Aligned_cols=252 Identities=14% Similarity=0.087 Sum_probs=178.0
Q ss_pred cHHHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCC-CCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHH
Q 004888 334 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVP-HFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYL 412 (725)
Q Consensus 334 ~~~~~~~~~~TL~~ma~gGi~D~v~GGF~RYs~D~~W~vP-HFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl 412 (725)
+++.++.+...-+.++. -++. .|||.+ +-+.. ..| .--.+.+||=++|.+++.|+++++|+.|+++|+..++++
T Consensus 106 ~~~~~~~~~~aA~~L~~--r~~~-~~g~i~-sw~~~-~~~~~~~~~iID~mmni~~L~~A~~~~gd~~y~~~A~~~a~~~ 180 (377)
T 2ahf_A 106 DESARKLALDAADVLMR--RWRA-DAGIIQ-AWGPK-GDPENGGRIIIDCLLNLPLLLWAGEQTGDPEYRRVAEAHALKS 180 (377)
T ss_dssp CHHHHHHHHHHHHHHHT--TEET-TTTEEC-CBSST-TCTTTTTEEEGGGGGGHHHHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH--hCCC-CCCeEE-eccCC-CCCCCCceEEechHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 47889999999888887 4664 567776 32210 012 122688899999999999999999999999999999999
Q ss_pred HHhccCCCCceeeeccCCCccccccccccCcceEEechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcc
Q 004888 413 RRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKN 492 (725)
Q Consensus 413 ~~~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~lg~~~~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~n 492 (725)
++.+..++|.+|+...-|.. +|.
T Consensus 181 l~~~~r~dgs~~h~~~~D~~--------------------------------------------------------tG~- 203 (377)
T 2ahf_A 181 RRFLVRGDDSSYHTFYFDPE--------------------------------------------------------NGN- 203 (377)
T ss_dssp HHHTBBTTSCBCSEEEECTT--------------------------------------------------------TCC-
T ss_pred HHhCcCCCCCeEEEEEeeCC--------------------------------------------------------CCC-
Confidence 99999888988875433321 111
Q ss_pred eeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCCCCCCcchhhhcHHHHHHHHHHHHHHhhhhhhhhcccCC
Q 004888 493 VLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFP 572 (725)
Q Consensus 493 vL~~~~~~~~~a~~~g~~~e~~~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal~I~aLa~A~~vl~d~~~~~~~~~~ 572 (725)
++|. ...+.+.||..=+--+|.+|.+|+.++++++|
T Consensus 204 ~~~~----------------------------------~t~qG~~dds~WaRGqAw~i~gl~~ly~~T~d---------- 239 (377)
T 2ahf_A 204 AIRG----------------------------------GTHQGNTDGSTWTRGQAWGIYGFALNSRYLGN---------- 239 (377)
T ss_dssp EEEE----------------------------------ECSSSSSTTSCBHHHHHHHHHHHHHHHHHHTC----------
T ss_pred eeeC----------------------------------CCcCCcCCcchhHHHHHHHHHHHHHHHHHHCC----------
Confidence 0110 01234567753333479999999999999998
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhccccCCCe-EEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcC-----CHHHHHHHH
Q 004888 573 VVGSDRKEYMEVAESAASFIRRHLYDEQTHR-LQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGS-----GTKWLVWAI 646 (725)
Q Consensus 573 ~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~-l~~s~~~g~~~~~~~leDyA~li~aLL~LYe~Tg-----d~~yL~~A~ 646 (725)
++||+.|+++++++.+++ |++|. ++++..+..+..+.-++..|.++.||++|+++++ +++|++.|+
T Consensus 240 ------~~yL~~A~~la~~~l~~~--~~d~~pywd~~~~~~~~~~~d~Sa~aiaA~~Ll~L~~~~~~~~~~~~~Y~~~A~ 311 (377)
T 2ahf_A 240 ------ADLLETAKRMARHFLARV--PEDGVVYWDFEVPQEPSSYRDSSASAITACGLLEIASQLDESDPERQRFIDAAK 311 (377)
T ss_dssp ------HHHHHHHHHHHHHHHTTC--CTTSSCBSBTTSCCCTTSCBCHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHHHHhh--HHhCCcccccCCCccCCCccCCCHHHHHHHHHHHHHHhcCccccchHHHHHHHH
Confidence 789999999999999998 44554 5554222222233445677899999999999996 788999999
Q ss_pred HHHHHHHHHccccC---CCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHh
Q 004888 647 ELQNTQDELFLDRE---GGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASI 703 (725)
Q Consensus 647 ~L~~~~~~~F~D~~---~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~ 703 (725)
++.+.+.+.+.... .++......-+ .......|..+|+|..-..++|+||...
T Consensus 312 ~~l~~l~~~y~~~~~~~~~g~L~h~~~~----~~~~~~~d~~~~ygDy~~~Eal~r~~~~ 367 (377)
T 2ahf_A 312 TTVTALRDGYAERDDGEAEGFIRRGSYH----VRGGISPDDYTIWGDYYYLEALLRLERG 367 (377)
T ss_dssp HHHHHHHHHTBCCCCSSCCCSBSCBCSB----TTTTBSSSBCBHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCCCCCeEEeccccc----CCCCCCCCcCccHHHHHHHHHHHHHHcC
Confidence 99999988876432 12222111100 0011135777889999999999998764
No 24
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Probab=99.31 E-value=3.8e-11 Score=132.04 Aligned_cols=211 Identities=11% Similarity=0.080 Sum_probs=158.9
Q ss_pred cHHHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHH
Q 004888 334 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLR 413 (725)
Q Consensus 334 ~~~~~~~~~~TL~~ma~gGi~D~v~GGF~RYs~D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~ 413 (725)
+++.++.+...-+.++. -++ ..|||.+ +.+..- .|.-..+.+||-+-|.+++.|+++++|+.|+++|++.+++++
T Consensus 132 ~~~~~~~~~~aA~~L~~--r~~-~~~g~iq-sw~~~~-~~~~~~~iID~~mni~~L~~A~~~~gd~~y~~~A~~ha~~~l 206 (397)
T 2zzr_A 132 DVKALEATIKAADKLME--RYQ-EKGGFIQ-AWGELG-YKEHYRLIIDCLLNIQLLFFAYEQTGDEKYRQVAVNHFYASA 206 (397)
T ss_dssp CHHHHHHHHHHHHHHHT--TEE-TTTTEEC-CSSSTT-CGGGCEEETTHHHHTHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH--HhC-cCCCEEE-ecccCC-CCCCCceeechHhHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 47899999999999977 564 5678887 433211 122237888999999999999999999999999999999999
Q ss_pred HhccCCCCceeeeccCCCccccccccccCcceEEechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcce
Q 004888 414 RDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNV 493 (725)
Q Consensus 414 ~~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~lg~~~~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nv 493 (725)
+.++.++|+.|+....|.. +|+.
T Consensus 207 ~~~~r~dgs~~h~~~~d~~--------------------------------------------------------~G~~- 229 (397)
T 2zzr_A 207 NNVVRDDSSAFHTFYFDPE--------------------------------------------------------TGEP- 229 (397)
T ss_dssp HHTBCTTSCBCSEEEECTT--------------------------------------------------------TCCE-
T ss_pred HhCcCCCCCeEEEEEeeCC--------------------------------------------------------CCCc-
Confidence 9999888999887554421 1110
Q ss_pred eeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCCCCCCcchhhhcHHHHHHHHHHHHHHhhhhhhhhcccCCC
Q 004888 494 LIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPV 573 (725)
Q Consensus 494 L~~~~~~~~~a~~~g~~~e~~~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal~I~aLa~A~~vl~d~~~~~~~~~~~ 573 (725)
.+ ......+.||..=+--+|.+|.||+.+|++++|
T Consensus 230 ~~----------------------------------~~t~qGy~dds~WaRGqAw~i~gl~~lY~~T~d----------- 264 (397)
T 2zzr_A 230 LK----------------------------------GVTRQGYSDESSWARGQAWGIYGIPLSYRKMKD----------- 264 (397)
T ss_dssp EE----------------------------------EECTTSSSTTSCBHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred cc----------------------------------CCcccccCcchhhHHHHHHHHHHHHHHHHHHCC-----------
Confidence 00 001234567763333479999999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHHhccccCCCe-EEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCC---HH--HHHHHHH
Q 004888 574 VGSDRKEYMEVAESAASFIRRHLYDEQTHR-LQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSG---TK--WLVWAIE 647 (725)
Q Consensus 574 ~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~-l~~s~~~g~~~~~~~leDyA~li~aLL~LYe~Tgd---~~--yL~~A~~ 647 (725)
++||+.|+++++++.+++ |++|. ++++..++.+..+.=++..|.++.||++|++++++ .+ |++.|++
T Consensus 265 -----~~yL~~A~~la~~~l~~~--~~d~~pywdt~~~~~~~~~~D~Sa~aiaA~~Ll~L~~~~~~~~~~~~~Y~~~A~~ 337 (397)
T 2zzr_A 265 -----YQQIILFKGMTNYFLNRL--PEDKVSYWDLIFTDGSGQPRDTSATATAVCGIHEMLKYLPEVDPDKETYKYAMHT 337 (397)
T ss_dssp -----HHHHHHHHHHHHHHHHTC--CTTSCCBSBTTCCTTSCCCBCHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHhh--HHhCCccccCCCCCCCCCcCCCCHHHHHHHHHHHHHHhcCccchhhHHHHHHHHH
Confidence 789999999999999998 34554 66553333332233366788999999999999987 78 9999999
Q ss_pred HHHHHHHHccc
Q 004888 648 LQNTQDELFLD 658 (725)
Q Consensus 648 L~~~~~~~F~D 658 (725)
+++.+......
T Consensus 338 ~l~~l~~~y~~ 348 (397)
T 2zzr_A 338 MLRSLIEQYSN 348 (397)
T ss_dssp HHHHHHHHTBC
T ss_pred HHHHHHHHHhc
Confidence 99999887654
No 25
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=99.29 E-value=7.2e-12 Score=120.91 Aligned_cols=91 Identities=25% Similarity=0.427 Sum_probs=67.2
Q ss_pred CCCCccccchHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHH
Q 004888 118 HNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQA 197 (725)
Q Consensus 118 ~~~V~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~ 197 (725)
...++|..+ +++++.+..++|||+|+|+++||++|+.|.. +|.........+-.||.|.+|.++.+ +...|
T Consensus 27 ~~~i~w~~~-~~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p-~l~~~~~~~~~~~~~~~v~~d~~~~~-~~~~~------ 97 (164)
T 1sen_A 27 GDHIHWRTL-EDGKKEAAASGLPLMVIIHKSWCGACKALKP-KFAESTEISELSHNFVMVNLEDEEEP-KDEDF------ 97 (164)
T ss_dssp CTTSCBCCH-HHHHHHHHHHTCCEEEEEECTTCHHHHHHHH-HHHTCHHHHHHHTTSEEEEEEGGGSC-SCGGG------
T ss_pred cccccccCH-HHHHHHHHhcCCeEEEEEECCCCHHHHHHHH-HHHHHHHHhhcCCeEEEEEecCCchH-HHHHh------
Confidence 557999665 7999999999999999999999999999986 44442222223446888777765332 32233
Q ss_pred hcCC--CCcCcEEEecCCCCcccc
Q 004888 198 LYGG--GGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 198 ~~g~--~G~P~~vfl~pdG~~i~~ 219 (725)
++ .++|+++|++++|+++..
T Consensus 98 --~~~~~~~Pt~~~~d~~G~~~~~ 119 (164)
T 1sen_A 98 --SPDGGYIPRILFLDPSGKVHPE 119 (164)
T ss_dssp --CTTCSCSSEEEEECTTSCBCTT
T ss_pred --cccCCcCCeEEEECCCCCEEEE
Confidence 44 569999999999998854
No 26
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=99.28 E-value=1.3e-12 Score=120.20 Aligned_cols=91 Identities=11% Similarity=0.038 Sum_probs=72.9
Q ss_pred CCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCC--cchHHHHHHHHHHhcCCCCcCcEEEecCCCC
Q 004888 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER--PDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (725)
Q Consensus 138 ~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~--pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~ 215 (725)
.+++||+|+++||++|+.|+.+++++.++.+.+. .+..++||+++. +++...| ++.|+||+||++ +|+
T Consensus 18 ~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~-~~~l~~vdv~~~~~~~la~~~--------~V~g~PT~i~f~-~G~ 87 (116)
T 3dml_A 18 AELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGR-AAPVQRLQMRDPLPPGLELAR--------PVTFTPTFVLMA-GDV 87 (116)
T ss_dssp -CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHH-HSCEEEEETTSCCCTTCBCSS--------CCCSSSEEEEEE-TTE
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcc-cceEEEEECCCCCchhHHHHC--------CCCCCCEEEEEE-CCE
Confidence 4689999999999999999999999988876664 477777887764 3554443 788999999999 999
Q ss_pred cccc-ccccCCCCCCCcchHHHHHHHHHHH
Q 004888 216 PLMG-GTYFPPEDKYGRPGFKTILRKVKDA 244 (725)
Q Consensus 216 ~i~~-~tY~p~~~~~~~~~F~~~L~~i~~~ 244 (725)
++.. .+|.|++ .|.+.|+++...
T Consensus 88 ev~Ri~G~~~~~------~f~~~L~~~l~~ 111 (116)
T 3dml_A 88 ESGRLEGYPGED------FFWPMLARLIGQ 111 (116)
T ss_dssp EEEEEECCCCHH------HHHHHHHHHHHH
T ss_pred EEeeecCCCCHH------HHHHHHHHHHhh
Confidence 9976 4677765 799999887644
No 27
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=99.25 E-value=5e-11 Score=130.71 Aligned_cols=171 Identities=13% Similarity=0.148 Sum_probs=131.4
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhcc------CCC--CCCCcchhhhcH---HHHHHHHHHHHHHhhhhhhhhcccCCCCC
Q 004888 507 LGMPLEKYLNILGECRRKLFDVRSK------RPR--PHLDDKVIVSWN---GLVISSFARASKILKSEAESAMFNFPVVG 575 (725)
Q Consensus 507 ~g~~~e~~~~~l~~~r~kL~~~R~~------R~~--P~lDdKiitsWN---al~I~aLa~A~~vl~d~~~~~~~~~~~~~ 575 (725)
.+++.+++.+.|+.++++|.+.|.. |.+ |.+|+|++++|| |+++.+|..+++++||
T Consensus 20 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~f~~~~~~~~~~d~k~~~~W~Wt~G~~~~gl~~~ye~Tgd------------- 86 (382)
T 3pmm_A 20 RFIARSELQALIRNVTQNLVNIKDESGQFLLRLDDGRVIDTKGWAGWEWTHGVGLYGIYQYYQQTGD------------- 86 (382)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCCCTTCTTCEECTTSCEECSSSTTSCSHHHHHHHHHHHHHHHHHCC-------------
T ss_pred hcCCHHHHHHHHHHHHHHHHhccCccccccccCCccccccCCCCcCccccHHHHHHHHHHHHHHHCC-------------
Confidence 3678899999999999999999876 655 789999999999 9999999999999998
Q ss_pred CChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004888 576 SDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDEL 655 (725)
Q Consensus 576 ~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~ 655 (725)
++|++.|++..+.+.+. +|.+ ...+|++++. +|+++|+.|||++|++.|.++++.+.++
T Consensus 87 ---~~y~~~a~~~~~~~~~~-----~~~~------------~n~D~~~~~~-~l~~lY~~Tgd~~Yl~~a~~~ad~L~~~ 145 (382)
T 3pmm_A 87 ---IEMRDIIDRWFADRFAE-----GATT------------KNVNTMAPFL-TLAYRFEETGRMAYLPWLESWAEWAMHE 145 (382)
T ss_dssp ---HHHHHHHHHHHHHHHHH-----CCCC------------CCTTTTTTHH-HHHHHHHHHCCGGGHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHcC-----CCCc------------CcccchHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 78999999977754321 2211 2355666654 8999999999999999999999999888
Q ss_pred ccccCCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 004888 656 FLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLYL 722 (725)
Q Consensus 656 F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~t~~~~~~~y~~~A~~~l~~ 722 (725)
+.+.+.|+|+....+.+. ..+. ..| +.-.++..|.+++.+||+ +.|.+.|.+.+..
T Consensus 146 ~~r~~~Ggf~~~~~~~~~-~~~~--WiD-----gl~M~~p~La~~~~~tgd---~~y~d~A~~q~~~ 201 (382)
T 3pmm_A 146 MPRTEQGGMQHMTLAEEN-HQQM--WDD-----TLMMTVLPLAKIGKLLNR---PQYVEEATYQFLL 201 (382)
T ss_dssp SCBCGGGCBCCCCSSCCC-TTEE--ETT-----HHHHTHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred CCCCcCCCeeeecCCCCC-CCcE--Eec-----chhhhHHHHHHHHHHHCC---HHHHHHHHHHHHH
Confidence 888778888764311100 0011 113 234566788999999997 7899888665544
No 28
>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=2.1e-11 Score=120.23 Aligned_cols=122 Identities=14% Similarity=0.113 Sum_probs=92.0
Q ss_pred CCCcccc-chHHHHHHH----hhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHH
Q 004888 119 NPVDWFA-WGEEAFAEA----RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMT 193 (725)
Q Consensus 119 ~~V~W~~-~~~eAl~~A----k~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~ 193 (725)
.-..|+. -+++|+++| |+++|++||+++.+||.+|+.|.+++|.|++|.++||+|||....|++.. +..+.++.
T Consensus 31 ~~p~F~~gs~~~Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~nfV~w~~dv~~~-e~~~~~~~ 109 (178)
T 2ec4_A 31 CHPVFFIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWAWDLTKD-SNRARFLT 109 (178)
T ss_dssp CCCCCCCSCHHHHHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHHTEEEEEEECCSH-HHHHHHHH
T ss_pred CCCCeeeCCHHHHHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHcCEEEEEEeCCCc-hhhhhhhh
Confidence 3344554 359999999 99999999999999999999999999999999999999999999999853 32222211
Q ss_pred H---------HHH--hcCCCCcCcEEEecCCCC---cccc-ccccCCCCCCCcchHHHHHHHHHHHHhh
Q 004888 194 Y---------VQA--LYGGGGWPLSVFLSPDLK---PLMG-GTYFPPEDKYGRPGFKTILRKVKDAWDK 247 (725)
Q Consensus 194 ~---------~q~--~~g~~G~P~~vfl~pdG~---~i~~-~tY~p~~~~~~~~~F~~~L~~i~~~~~~ 247 (725)
. .+. .++..++|+.+|+++.+. .+.. .|+.+++ .|++.|..+.+.|+.
T Consensus 110 ~~~~~~g~~~a~~~~~~~~~~~P~l~ii~~~~~~~~vl~~~~G~~~~~------~ll~~L~~~~e~~~~ 172 (178)
T 2ec4_A 110 MCNRHFGSVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQGNTTVD------ELMMRLMAAMEIFTA 172 (178)
T ss_dssp HHHHHTCHHHHHHHHHSCSTTCSEEEEECCCSSCCCEEEEECSCCCHH------HHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhcCCCCCCeEEEEEcCCCceEEEEEEeCCCCHH------HHHHHHHHHHHHhhH
Confidence 1 111 147889999999998863 3322 2455544 788888888777663
No 29
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=99.20 E-value=2.8e-11 Score=112.17 Aligned_cols=88 Identities=18% Similarity=0.248 Sum_probs=69.1
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCc
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~ 216 (725)
.+|||+|.|+++||++|+.|.... .++++.++.++..++||.++.+++.+.| ++.++|+++|++++|++
T Consensus 50 ~~k~vlv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~~~~g~~ 118 (141)
T 3hxs_A 50 GDKPAIVDFYADWCGPCKMVAPIL---EELSKEYAGKIYIYKVNVDKEPELARDF--------GIQSIPTIWFVPMKGEP 118 (141)
T ss_dssp CSSCEEEEEECTTCTTHHHHHHHH---HHHHHHTTTTCEEEEEETTTCHHHHHHT--------TCCSSSEEEEECSSSCC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhcCceEEEEEECCCCHHHHHHc--------CCCCcCEEEEEeCCCCE
Confidence 589999999999999999998544 5677777768999999999988877665 89999999999999998
Q ss_pred cccccccCCCCCCCcchHHHHHHHH
Q 004888 217 LMGGTYFPPEDKYGRPGFKTILRKV 241 (725)
Q Consensus 217 i~~~tY~p~~~~~~~~~F~~~L~~i 241 (725)
+...++.+. ..+.+.|+++
T Consensus 119 ~~~~G~~~~------~~l~~~l~~~ 137 (141)
T 3hxs_A 119 QVNMGALSK------EQLKGYIDKV 137 (141)
T ss_dssp EEEESCCCH------HHHHHHHHHT
T ss_pred EEEeCCCCH------HHHHHHHHHH
Confidence 744344432 2455555443
No 30
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=99.20 E-value=2.4e-11 Score=107.67 Aligned_cols=85 Identities=18% Similarity=0.169 Sum_probs=68.5
Q ss_pred cccchHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCC
Q 004888 123 WFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGG 202 (725)
Q Consensus 123 W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~ 202 (725)
+....+++++.+++++||++|.|+++||++|+.|... + .++++.+..++..++||.++.+++.+.| ++.
T Consensus 9 ~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~-l--~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~ 77 (112)
T 1ep7_A 9 SKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPL-F--ETLSNDYAGKVIFLKVDVDAVAAVAEAA--------GIT 77 (112)
T ss_dssp SHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTTSEEEEEETTTTHHHHHHH--------TCC
T ss_pred CHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHH-H--HHHHHHcCCCeEEEEEECCchHHHHHHc--------CCC
Confidence 3344577888777789999999999999999999854 3 3566666557999999999888777666 889
Q ss_pred CcCcEEEecCCCCcccc
Q 004888 203 GWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 203 G~P~~vfl~pdG~~i~~ 219 (725)
++|+++|+ ++|+++..
T Consensus 78 ~~Pt~~~~-~~G~~~~~ 93 (112)
T 1ep7_A 78 AMPTFHVY-KDGVKADD 93 (112)
T ss_dssp BSSEEEEE-ETTEEEEE
T ss_pred cccEEEEE-ECCeEEEE
Confidence 99998877 79998754
No 31
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=99.18 E-value=4.4e-11 Score=105.93 Aligned_cols=103 Identities=21% Similarity=0.215 Sum_probs=76.0
Q ss_pred CccccchHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcC
Q 004888 121 VDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYG 200 (725)
Q Consensus 121 V~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g 200 (725)
|.+....++.++.|+..+||++|.|+++||++|+.|... + .++++... ++..++||.++.+++.+.| +
T Consensus 9 i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~-l--~~~~~~~~-~v~~~~v~~~~~~~~~~~~--------~ 76 (113)
T 1ti3_A 9 CHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPI-F--AELAKKFP-NVTFLKVDVDELKAVAEEW--------N 76 (113)
T ss_dssp ECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHH-H--HHHHHHCS-SEEEEEEETTTCHHHHHHH--------H
T ss_pred eccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHH-H--HHHHHhCC-CcEEEEEEccccHHHHHhC--------C
Confidence 334444578888888899999999999999999999853 2 23444332 7999999999888877666 7
Q ss_pred CCCcCcEEEecCCCCccccccccCCCCCCCcchHHHHHHHHH
Q 004888 201 GGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (725)
Q Consensus 201 ~~G~P~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i~ 242 (725)
+.++|+++|+ .+|+++.......+ +.+.+.|+++.
T Consensus 77 v~~~Pt~~~~-~~G~~~~~~~g~~~------~~l~~~l~~~~ 111 (113)
T 1ti3_A 77 VEAMPTFIFL-KDGKLVDKTVGADK------DGLPTLVAKHA 111 (113)
T ss_dssp CSSTTEEEEE-ETTEEEEEEECCCT------THHHHHHHHHH
T ss_pred CCcccEEEEE-eCCEEEEEEecCCH------HHHHHHHHHhh
Confidence 8899999988 78998754221232 36777776654
No 32
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=99.17 E-value=6.9e-11 Score=104.30 Aligned_cols=99 Identities=14% Similarity=0.162 Sum_probs=74.8
Q ss_pred cchHHHHHHHh-hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCC
Q 004888 125 AWGEEAFAEAR-KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGG 203 (725)
Q Consensus 125 ~~~~eAl~~Ak-~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G 203 (725)
....+.++.+. +.+||++|.|+++||+.|+.|.... .++++.+..++..++||.++.+++.+.| ++.+
T Consensus 8 ~l~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~---~~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~ 76 (111)
T 3gnj_A 8 KLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVL---EELRLNYEESFGFYYVDVEEEKTLFQRF--------SLKG 76 (111)
T ss_dssp ECCHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTTCHHHHHHT--------TCCS
T ss_pred ecCHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHH---HHHHHHcCCceEEEEEECCcChhHHHhc--------CCCc
Confidence 33467777776 8899999999999999999998543 5666666667999999999988876665 8899
Q ss_pred cCcEEEecCCCCcccc-ccccCCCCCCCcchHHHHHHHH
Q 004888 204 WPLSVFLSPDLKPLMG-GTYFPPEDKYGRPGFKTILRKV 241 (725)
Q Consensus 204 ~P~~vfl~pdG~~i~~-~tY~p~~~~~~~~~F~~~L~~i 241 (725)
+|+++|+ .+|+++.. .++.+. ..+.+.|+++
T Consensus 77 ~Pt~~~~-~~g~~~~~~~g~~~~------~~l~~~l~~~ 108 (111)
T 3gnj_A 77 VPQILYF-KDGEYKGKMAGDVED------DEVEQMIADV 108 (111)
T ss_dssp SCEEEEE-ETTEEEEEEESSCCH------HHHHHHHHHH
T ss_pred CCEEEEE-ECCEEEEEEeccCCH------HHHHHHHHHH
Confidence 9999999 78988743 233332 2555555544
No 33
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=99.16 E-value=2.2e-11 Score=110.94 Aligned_cols=76 Identities=24% Similarity=0.311 Sum_probs=62.4
Q ss_pred HHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEc--CCCCcchHHHHHHHHHHhcCCCCcCcEEEe
Q 004888 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVD--REERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (725)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD--~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl 210 (725)
.+..++||++|.|+++||++|+.|.... .++++.+..++..++|| .++.+++.+.| ++.++|+++|+
T Consensus 21 ~~~~~~k~~lv~f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~--------~v~~~Pt~~~~ 89 (126)
T 2l57_A 21 EEAKEGIPTIIMFKTDTCPYCVEMQKEL---SYVSKEREGKFNIYYARLEEEKNIDLAYKY--------DANIVPTTVFL 89 (126)
T ss_dssp TTCCSSSCEEEEEECSSCHHHHHHHHHH---HHHHHHSSSSCEEEEEETTSSHHHHHHHHT--------TCCSSSEEEEE
T ss_pred HHHhCCCcEEEEEECCCCccHHHHHHHH---HHHHHHhcCCeEEEEEeCCCCchHHHHHHc--------CCcceeEEEEE
Confidence 4567899999999999999999998644 46666666679999999 77666555444 88999999999
Q ss_pred cCCCCcccc
Q 004888 211 SPDLKPLMG 219 (725)
Q Consensus 211 ~pdG~~i~~ 219 (725)
+++|+++..
T Consensus 90 ~~~G~~~~~ 98 (126)
T 2l57_A 90 DKEGNKFYV 98 (126)
T ss_dssp CTTCCEEEE
T ss_pred CCCCCEEEE
Confidence 999998754
No 34
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=99.15 E-value=7.8e-11 Score=105.06 Aligned_cols=79 Identities=16% Similarity=0.158 Sum_probs=64.8
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcE
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~ 207 (725)
.+-++++.+++|||+|.|+++||++|+.|.... .++++.+ .++..++||.++.+++.+.| ++.++|++
T Consensus 14 ~~~f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l---~~l~~~~-~~~~~~~vd~~~~~~l~~~~--------~v~~~Pt~ 81 (109)
T 3f3q_A 14 ASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMI---EKFSEQY-PQADFYKLDVDELGDVAQKN--------EVSAMPTL 81 (109)
T ss_dssp HHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHH---HHHHHHC-TTSEEEEEETTTCHHHHHHT--------TCCSSSEE
T ss_pred HHHHHHHHhcCCEEEEEEECCcCHhHHHHHHHH---HHHHHHC-CCCEEEEEECCCCHHHHHHc--------CCCccCEE
Confidence 678888999999999999999999999998432 3444443 35889999999888876665 89999999
Q ss_pred EEecCCCCcccc
Q 004888 208 VFLSPDLKPLMG 219 (725)
Q Consensus 208 vfl~pdG~~i~~ 219 (725)
+|++ +|+++..
T Consensus 82 ~~~~-~G~~~~~ 92 (109)
T 3f3q_A 82 LLFK-NGKEVAK 92 (109)
T ss_dssp EEEE-TTEEEEE
T ss_pred EEEE-CCEEEEE
Confidence 9997 8988764
No 35
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=99.15 E-value=1.4e-09 Score=118.73 Aligned_cols=255 Identities=13% Similarity=0.138 Sum_probs=173.1
Q ss_pred CChhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHH
Q 004888 310 PRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVY 389 (725)
Q Consensus 310 P~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~ma~gGi~D~v~GGF~RYs~D~~W~vPHFEKMLyDNA~Ll~~y 389 (725)
|+...+.-|+..+..++ +++.++.+....+.+.. . +|... |..+ + + |+-.+..++
T Consensus 42 ~~G~~~~gl~~~y~~tg-------d~~y~~~a~~~~~~~~~-----~-~g~l~-~~~~------~----l-Dd~~~g~~l 96 (373)
T 1nc5_A 42 HQGVFLCGVLRLWEATG-------EKRYFEYAKAYADLLID-----D-NGNLL-FRRD------E----L-DAIQAGLIL 96 (373)
T ss_dssp HHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHBC-----T-TCCBC-CCTT------C----G-GGTGGGGGH
T ss_pred hHHHHHHHHHHHHHHhC-------CHHHHHHHHHHHHHHhC-----C-CCccc-CCCC------C----c-chHHHHHHH
Confidence 34444555666666543 47889999988888642 1 23221 2211 1 3 322367799
Q ss_pred HHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCccccccccccCcceEEechHHHHHHhhhhHHHHHHHhc
Q 004888 390 LDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYY 469 (725)
Q Consensus 390 a~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~lg~~~~l~~~~y~ 469 (725)
++.|+.|+|+.|++.|....++|......++|||+...+ .+ .-+|
T Consensus 97 l~lY~~Tgd~~yl~~a~~la~~l~~~~r~~~G~fw~~~~------------~~--~~~w--------------------- 141 (373)
T 1nc5_A 97 FPLYEQTKDERYVKAAKRLRSLYGTLNRTSEGGFWHKDG------------YP--YQMW--------------------- 141 (373)
T ss_dssp HHHHHHHCCHHHHHHHHHHHGGGGTSCBCTTSCBCSCTT------------ST--TEEE---------------------
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhccCCCCCCeeccCC------------CC--CeEE---------------------
Confidence 999999999999999999999997766455688854200 00 0001
Q ss_pred ccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCCCCCCcchhhhcHHHH
Q 004888 470 LKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLV 549 (725)
Q Consensus 470 l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~e~~~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal~ 549 (725)
.|. ..+.
T Consensus 142 -------------------------------------------------------------------~D~------l~m~ 148 (373)
T 1nc5_A 142 -------------------------------------------------------------------LDG------LYMG 148 (373)
T ss_dssp -------------------------------------------------------------------THH------HHHH
T ss_pred -------------------------------------------------------------------eCc------HHHH
Confidence 111 1245
Q ss_pred HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecC-CCCC-------C-C-CCc
Q 004888 550 ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN-GPSK-------A-P-GFL 619 (725)
Q Consensus 550 I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~-g~~~-------~-~-~~l 619 (725)
+..|+++++++|| ++|++.|.+.+....++++|+++|.++|.+.. +... . + ...
T Consensus 149 ~p~L~~l~~~tgd----------------~~y~d~A~~~~~~~~~~l~D~~tGl~~h~~~~~~~~~w~d~~tg~~~~~Wa 212 (373)
T 1nc5_A 149 GPFALKYANLKQE----------------TELFDQVVLQESLMRKHTKDAKTGLFYHAWDEAKKMPWANEETGCSPEFWA 212 (373)
T ss_dssp HHHHHHHHHHHTC----------------THHHHHHHHHHHHHHHHHBCTTTSCBCSEEETTCCSTTSCTTTCBCSCCBH
T ss_pred HHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHHhcCCCCCCEEeecCCccccccccccCCCCCCccc
Confidence 7789999999998 78999999999999999999999988887642 2110 0 1 112
Q ss_pred chHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCChHHHHH
Q 004888 620 DDYAFLISGLLDLYEF-----GSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSV 694 (725)
Q Consensus 620 eDyA~li~aLL~LYe~-----Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a 694 (725)
-.+++++.|++++|+. ++++.|++.++++.+.+..+. +++.|.|.. .-+++.. + ..-.+.|+.++.+
T Consensus 213 Rg~gW~~~gl~~~l~~lp~~~~~~~~~~~~~~~~a~~l~~~q-~~~dG~W~~-~ld~~~~---~---~~~~EsSatA~~a 284 (373)
T 1nc5_A 213 RSIGWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSICRYQ-DKETGLWYQ-IVDKGDR---S---DNWLESSGSCLYM 284 (373)
T ss_dssp HHHHHHHHHHHHHGGGSCTTCHHHHHHHHHHHHHHHHHHTTS-CTTTSCCBS-BTTCTTS---T---TCCBCHHHHHHHH
T ss_pred chHhHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhc-CCCCCceee-ecCCCCC---C---CCCccccHHHHHH
Confidence 2779999999999998 688899999999999998876 655564442 1111110 0 0113468999999
Q ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 004888 695 INLVRLASIVAGSKSDYYRQNAEHSLYLR 723 (725)
Q Consensus 695 ~~LlrL~~~t~~~~~~~y~~~A~~~l~~~ 723 (725)
..|+++.+. |-. ++.|+..|++.++.+
T Consensus 285 y~l~~g~~~-g~l-~~~Y~~~a~k~~~~l 311 (373)
T 1nc5_A 285 YAIAKGINK-GYL-DRAYETTLLKAYQGL 311 (373)
T ss_dssp HHHHHHHHH-TSS-CGGGHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCC-cHHHHHHHHHHHHHH
Confidence 999998754 211 157999999998876
No 36
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=99.15 E-value=5.8e-11 Score=110.11 Aligned_cols=72 Identities=24% Similarity=0.348 Sum_probs=61.0
Q ss_pred hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCC
Q 004888 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~ 215 (725)
+.+||++|.|+++||++|+.|.... .++++.+..++..++||.++.+++.+.| ++.++|+++|++++|+
T Consensus 36 ~~~k~~lv~f~a~wC~~C~~~~~~l---~~l~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~~~~G~ 104 (136)
T 2l5l_A 36 EGDKPAIVDFYADWCGPCKMVAPIL---DELAKEYDGQIVIYKVDTEKEQELAGAF--------GIRSIPSILFIPMEGK 104 (136)
T ss_dssp CCSSCEEEEEECTTSHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTCHHHHHHT--------TCCSSCEEEEECSSSC
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHH---HHHHHHhcCCEEEEEEeCCCCHHHHHHc--------CCCCCCEEEEECCCCc
Confidence 3689999999999999999998643 4666667667999999999888776655 8899999999999999
Q ss_pred ccc
Q 004888 216 PLM 218 (725)
Q Consensus 216 ~i~ 218 (725)
++.
T Consensus 105 ~~~ 107 (136)
T 2l5l_A 105 PEM 107 (136)
T ss_dssp CEE
T ss_pred EEE
Confidence 873
No 37
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=99.14 E-value=2e-11 Score=106.90 Aligned_cols=79 Identities=20% Similarity=0.324 Sum_probs=65.6
Q ss_pred HHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEE
Q 004888 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (725)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~v 208 (725)
+.++.+.+++||++|.|+++||++|+.|.... .++++.+..++..++||.++.+++.+.| ++.++|+++
T Consensus 8 ~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l---~~~~~~~~~~v~~~~v~~~~~~~~~~~~--------~v~~~Pt~~ 76 (105)
T 1nsw_A 8 ANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVL---EEFAEAHADKVTVAKLNVDENPETTSQF--------GIMSIPTLI 76 (105)
T ss_dssp TTHHHHHSSSSCEEEEEECTTCHHHHHHHHHH---HHHHHHSTTTCEEEEEETTTCHHHHHHT--------TCCSSSEEE
T ss_pred HhHHHHHhCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCcEEEEEECcCCHHHHHHc--------CCccccEEE
Confidence 45667778899999999999999999998643 4666666667999999999888776655 889999999
Q ss_pred EecCCCCcccc
Q 004888 209 FLSPDLKPLMG 219 (725)
Q Consensus 209 fl~pdG~~i~~ 219 (725)
++ ++|+++..
T Consensus 77 ~~-~~G~~~~~ 86 (105)
T 1nsw_A 77 LF-KGGRPVKQ 86 (105)
T ss_dssp EE-ETTEEEEE
T ss_pred EE-eCCeEEEE
Confidence 99 89998754
No 38
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=99.14 E-value=5.7e-11 Score=106.60 Aligned_cols=71 Identities=17% Similarity=0.216 Sum_probs=58.1
Q ss_pred hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCC
Q 004888 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~ 215 (725)
..+|||+|+|+|+||++|+.|.... .++++.. .+.+.++||.++.|++.+.| ++.|+||++|+ .+|+
T Consensus 18 ~~~k~vvv~F~a~wC~~C~~~~p~~---~~~~~~~-~~~~~~~vd~d~~~~l~~~~--------~V~~~PT~~~~-~~G~ 84 (105)
T 3zzx_A 18 AGNKLVVIDFYATWCGPCKMIAPKL---EELSQSM-SDVVFLKVDVDECEDIAQDN--------QIACMPTFLFM-KNGQ 84 (105)
T ss_dssp TTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHC-TTEEEEEEETTTCHHHHHHT--------TCCBSSEEEEE-ETTE
T ss_pred cCCCEEEEEEECCCCCCccCCCcch---hhhhhcc-CCeEEEEEecccCHHHHHHc--------CCCeecEEEEE-ECCE
Confidence 3589999999999999999998533 2455444 36899999999999987776 89999998888 6899
Q ss_pred cccc
Q 004888 216 PLMG 219 (725)
Q Consensus 216 ~i~~ 219 (725)
++..
T Consensus 85 ~v~~ 88 (105)
T 3zzx_A 85 KLDS 88 (105)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8854
No 39
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.14 E-value=9.6e-11 Score=130.47 Aligned_cols=198 Identities=12% Similarity=0.069 Sum_probs=139.1
Q ss_pred CcceeeccCCchHHHHhcCC-CHHHHHHHHHHHHHHHHhhhccCC------CCCCC-----------cc---hhhhcHHH
Q 004888 490 GKNVLIELNDSSASASKLGM-PLEKYLNILGECRRKLFDVRSKRP------RPHLD-----------DK---VIVSWNGL 548 (725)
Q Consensus 490 g~nvL~~~~~~~~~a~~~g~-~~e~~~~~l~~~r~kL~~~R~~R~------~P~lD-----------dK---iitsWNal 548 (725)
.++-||+..+ +|..-+|+ +.+++++.|+.+.++|-+.-..|. ...+| .. ....-+|+
T Consensus 9 ~~~~~~~~~~--~~~~~~~~~~~~~i~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~Gv 86 (445)
T 3k11_A 9 SNTPLHLLQP--AYQGTYGDLTPEQVKKDIDRVFAYIDKETPARVVDKNTGKVITDYTAMGDEAQLERGAFRLASYEWGV 86 (445)
T ss_dssp TTCCGGGSCC--CCSSCCSCCCHHHHHHHHHHHHHHHHHTSCCCEEETTTCCEECCTTTCCTTEEECCCSSCTTSHHHHH
T ss_pred CCCchhhcCC--CCCCCCCcCCHHHHHHHHHHHHHHHhccCcceeecCCCCceeccccccccccccccCCcccCccCHHH
Confidence 3344666554 24444565 568899999988888876221111 10111 11 11123599
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHh------ccccCCCeEEEEecCCCCCCCCCcchH
Q 004888 549 VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRH------LYDEQTHRLQHSFRNGPSKAPGFLDDY 622 (725)
Q Consensus 549 ~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~------l~d~~~G~l~~s~~~g~~~~~~~leDy 622 (725)
|+.||+++++++|| ++|++.|++.++||.++ +++. +|++.+.++++ . ..++++||
T Consensus 87 ~l~gl~~ay~~Tgd----------------~kY~~ya~~~~dfi~~~~p~~~~~~~~-~G~l~~~~r~~-~-~~~~LDD~ 147 (445)
T 3k11_A 87 TYSALIAAAETTGD----------------KRYTDYVQNRFRFLAEVAPHFKRVYEE-KGKTDSQLLQI-L-TPHALDDA 147 (445)
T ss_dssp HHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HSCCCHHHHHH-H-SCCSGGGT
T ss_pred HHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHhccchhhhhhhc-cCCeecccccc-c-CCCcchhH
Confidence 99999999999998 89999999999999875 3353 56776666665 2 37899999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHHHHH
Q 004888 623 AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLAS 702 (725)
Q Consensus 623 A~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~ 702 (725)
++++.+|+++|+.|++++|++.|.++++.+..+|.+.+.|+|+........ . ..|+ .-.+.--|.+++.
T Consensus 148 g~~~~~Li~lY~~T~d~~yl~~a~~~ad~L~~~~pRt~~Ggf~h~~~~~~q----~--WiD~-----lyM~~pfla~~~~ 216 (445)
T 3k11_A 148 GAVCTAMIKLRLKDESLPVDGLIQNYFDFIINKEYRLADGTFARNRPQRNT----L--WLDD-----MFMGIPAVAQMSR 216 (445)
T ss_dssp HHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHTSCBCTTCCBCBCSSSTTE----E--ETHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCCCCceeecCCCCCc----e--Eecc-----hhhHHHHHHHHHH
Confidence 999999999999999999999999999999999998888888864321111 1 1231 1135667788999
Q ss_pred hhCCCCchH--HHHHHHHHHHH
Q 004888 703 IVAGSKSDY--YRQNAEHSLYL 722 (725)
Q Consensus 703 ~t~~~~~~~--y~~~A~~~l~~ 722 (725)
++|+ +. |.+.|.+.+..
T Consensus 217 ~tgd---~~~~y~d~A~~q~~~ 235 (445)
T 3k11_A 217 YDKE---AKNKYLAEAVKQFLQ 235 (445)
T ss_dssp HCGG---GHHHHHHHHHHHHHH
T ss_pred HHCC---cchHHHHHHHHHHHH
Confidence 9987 56 77777665443
No 40
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=99.13 E-value=1.3e-10 Score=102.08 Aligned_cols=96 Identities=18% Similarity=0.294 Sum_probs=71.4
Q ss_pred HHHHHH-HhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCc
Q 004888 128 EEAFAE-ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (725)
Q Consensus 128 ~eAl~~-Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~ 206 (725)
++.+.. ..+.+||++|.|+++||++|+.|.... .++++.++.++..++||.++.+++.+.| ++.++|+
T Consensus 8 ~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt 76 (107)
T 1dby_A 8 DDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVV---DEIAGEYKDKLKCVKLNTDESPNVASEY--------GIRSIPT 76 (107)
T ss_dssp HHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTCHHHHHHH--------TCCSSCE
T ss_pred HHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHH---HHHHHHhCCceEEEEEECCCCHHHHHHC--------CCCcCCE
Confidence 344444 567899999999999999999998543 4666666667999999999888777666 8899999
Q ss_pred EEEecCCCCcccc-ccccCCCCCCCcchHHHHHHHH
Q 004888 207 SVFLSPDLKPLMG-GTYFPPEDKYGRPGFKTILRKV 241 (725)
Q Consensus 207 ~vfl~pdG~~i~~-~tY~p~~~~~~~~~F~~~L~~i 241 (725)
++++ ++|+++.. .++.+++ .+.+.|+++
T Consensus 77 ~~~~-~~G~~~~~~~G~~~~~------~l~~~l~~~ 105 (107)
T 1dby_A 77 IMVF-KGGKKCETIIGAVPKA------TIVQTVEKY 105 (107)
T ss_dssp EEEE-SSSSEEEEEESCCCHH------HHHHHHHHH
T ss_pred EEEE-eCCEEEEEEeCCCCHH------HHHHHHHHH
Confidence 8887 79998754 2344422 455555543
No 41
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=99.13 E-value=4.6e-11 Score=104.69 Aligned_cols=96 Identities=16% Similarity=0.169 Sum_probs=71.8
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcE
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~ 207 (725)
.+.++.+.+++||++|.|+++||++|+.|.... .++++.+..++..+.||.++.+++.+.| ++.++|++
T Consensus 11 ~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~i~~~Pt~ 79 (109)
T 3tco_A 11 EENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIY---KKVAEKYKGKAVFGRLNVDENQKIADKY--------SVLNIPTT 79 (109)
T ss_dssp TTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTTCHHHHHHT--------TCCSSSEE
T ss_pred HHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHH---HHHHHHhCCCceEEEEccccCHHHHHhc--------CcccCCEE
Confidence 345566666799999999999999999998532 3455666667999999999988876665 88999999
Q ss_pred EEecCCCCccccc-cccCCCCCCCcchHHHHHHHH
Q 004888 208 VFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKV 241 (725)
Q Consensus 208 vfl~pdG~~i~~~-tY~p~~~~~~~~~F~~~L~~i 241 (725)
+|+ ++|+++... ++.+. +.+.+.|+++
T Consensus 80 ~~~-~~g~~~~~~~g~~~~------~~l~~~l~~~ 107 (109)
T 3tco_A 80 LIF-VNGQLVDSLVGAVDE------DTLESTVNKY 107 (109)
T ss_dssp EEE-ETTEEEEEEESCCCH------HHHHHHHHHH
T ss_pred EEE-cCCcEEEeeeccCCH------HHHHHHHHHH
Confidence 999 999987642 33332 2555555543
No 42
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=99.12 E-value=1.7e-10 Score=104.22 Aligned_cols=77 Identities=17% Similarity=0.168 Sum_probs=60.6
Q ss_pred HHHHHHHhh--cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc--CcEEEEEcCCCCcchHHHHHHHHHHhcCCCC
Q 004888 128 EEAFAEARK--RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGG 203 (725)
Q Consensus 128 ~eAl~~Ak~--e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~--~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G 203 (725)
.+-++++.+ ++|+|+|.|+++||++|+.|.. .+.++.++ ++..++||.++.+++.+.| ++.+
T Consensus 19 ~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p------~l~~l~~~~~~v~~~~vd~d~~~~l~~~~--------~v~~ 84 (116)
T 3qfa_C 19 KTAFQEALDAAGDKLVVVDFSATWCGPSKMIKP------FFHSLSEKYSNVIFLEVDVDDCQDVASEC--------EVKS 84 (116)
T ss_dssp HHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHH------HHHHHHTTCTTSEEEEEETTTTHHHHHHT--------TCCS
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHH------HHHHHHHHCCCCEEEEEECCCCHHHHHHc--------CCcc
Confidence 444555544 7999999999999999999984 44443332 4899999999988877665 8999
Q ss_pred cCcEEEecCCCCcccc
Q 004888 204 WPLSVFLSPDLKPLMG 219 (725)
Q Consensus 204 ~P~~vfl~pdG~~i~~ 219 (725)
+|+++|+ .+|+++..
T Consensus 85 ~Pt~~~~-~~G~~~~~ 99 (116)
T 3qfa_C 85 MPTFQFF-KKGQKVGE 99 (116)
T ss_dssp SSEEEEE-SSSSEEEE
T ss_pred ccEEEEE-eCCeEEEE
Confidence 9999998 88988754
No 43
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=99.12 E-value=8.1e-11 Score=107.81 Aligned_cols=84 Identities=23% Similarity=0.226 Sum_probs=66.9
Q ss_pred cccchHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCC
Q 004888 123 WFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGG 202 (725)
Q Consensus 123 W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~ 202 (725)
.....+++++.|+.++||++|.|+++||++|+.|... + .++++.+. ++..++||.++.+++.+.| ++.
T Consensus 23 ~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~-l--~~l~~~~~-~v~~~~vd~d~~~~l~~~~--------~v~ 90 (124)
T 1xfl_A 23 TVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPF-F--ADLAKKLP-NVLFLKVDTDELKSVASDW--------AIQ 90 (124)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHH-H--HHHHHHCS-SEEEEEEETTTSHHHHHHT--------TCC
T ss_pred CHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHH-H--HHHHHHCC-CcEEEEEECccCHHHHHHc--------CCC
Confidence 3344588899999999999999999999999999853 2 24444443 7999999999888776655 889
Q ss_pred CcCcEEEecCCCCcccc
Q 004888 203 GWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 203 G~P~~vfl~pdG~~i~~ 219 (725)
++|+++|+ ++|+++..
T Consensus 91 ~~Pt~~~~-~~G~~~~~ 106 (124)
T 1xfl_A 91 AMPTFMFL-KEGKILDK 106 (124)
T ss_dssp SSSEEEEE-ETTEEEEE
T ss_pred ccCEEEEE-ECCEEEEE
Confidence 99998887 89998754
No 44
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.12 E-value=1.9e-09 Score=120.07 Aligned_cols=265 Identities=12% Similarity=0.106 Sum_probs=185.2
Q ss_pred CCChhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCC-----CcccCCCeE-EEEecCCCCCCCCCchhHHHH
Q 004888 309 FPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGG-----IHDHVGGGF-HRYSVDERWHVPHFEKMLYDQ 382 (725)
Q Consensus 309 FP~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~ma~gG-----i~D~v~GGF-~RYs~D~~W~vPHFEKMLyDN 382 (725)
+|+...+.-|.+.+..++ +++..+.+.+..+-+..+- ..|. +|+. +||.- +..|+ .|-|.
T Consensus 82 y~~Gv~l~gl~~ay~~Tg-------d~kY~~ya~~~~dfi~~~~p~~~~~~~~-~G~l~~~~r~---~~~~~---~LDD~ 147 (445)
T 3k11_A 82 YEWGVTYSALIAAAETTG-------DKRYTDYVQNRFRFLAEVAPHFKRVYEE-KGKTDSQLLQ---ILTPH---ALDDA 147 (445)
T ss_dssp HHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HSCCCHHHHH---HHSCC---SGGGT
T ss_pred cCHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHhccchhhhhhhc-cCCeeccccc---ccCCC---cchhH
Confidence 555666777777777654 3777888777776554310 1232 2333 22321 11243 57789
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhcc-CCCCceeeeccCCCccccccccccCcceEEechHHHHHHhhhhH
Q 004888 383 GQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMI-GPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHA 461 (725)
Q Consensus 383 A~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~-~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~lg~~~ 461 (725)
|.+++++.++|+.++++.|++.|.+.++||.+.+. .++|||+.. +. .+ .-+|-
T Consensus 148 g~~~~~Li~lY~~T~d~~yl~~a~~~ad~L~~~~pRt~~Ggf~h~---~~---------~~--~q~Wi------------ 201 (445)
T 3k11_A 148 GAVCTAMIKLRLKDESLPVDGLIQNYFDFIINKEYRLADGTFARN---RP---------QR--NTLWL------------ 201 (445)
T ss_dssp HHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHTSCBCTTCCBCBC---SS---------ST--TEEET------------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCCCCceeec---CC---------CC--CceEe------------
Confidence 99999999999999999999999999999999885 456888762 00 00 00111
Q ss_pred HHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCCCCCCcch
Q 004888 462 ILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKV 541 (725)
Q Consensus 462 ~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~e~~~~~l~~~r~kL~~~R~~R~~P~lDdKi 541 (725)
|.
T Consensus 202 ----------------------------------------------------------------------------D~-- 203 (445)
T 3k11_A 202 ----------------------------------------------------------------------------DD-- 203 (445)
T ss_dssp ----------------------------------------------------------------------------HH--
T ss_pred ----------------------------------------------------------------------------cc--
Confidence 11
Q ss_pred hhhcHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHH--HHHHHHHHHHHHHHhccccCCCeEEEEecCCC-CCCC-C
Q 004888 542 IVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKE--YMEVAESAASFIRRHLYDEQTHRLQHSFRNGP-SKAP-G 617 (725)
Q Consensus 542 itsWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~--yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~-~~~~-~ 617 (725)
.-|.+--|+++++++|| ++ |++.|.+-+....++++|+++|.++|.+.... .... -
T Consensus 204 ----lyM~~pfla~~~~~tgd----------------~~~~y~d~A~~q~~~~~~~l~D~~tGL~~Hg~~~~~~~~~~~~ 263 (445)
T 3k11_A 204 ----MFMGIPAVAQMSRYDKE----------------AKNKYLAEAVKQFLQFADRMFIPEKGLYRHGWVESSTDHPAFC 263 (445)
T ss_dssp ----HHHHHHHHHHHHHHCGG----------------GHHHHHHHHHHHHHHHHHHHEETTTTEECSEEETTCSSCCCCC
T ss_pred ----hhhHHHHHHHHHHHHCC----------------cchHHHHHHHHHHHHHHHhcccCCCCCEeeeecCCCCCCCcce
Confidence 12556789999999998 67 99999999999999999999999999865432 1112 2
Q ss_pred CcchHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCChHHH
Q 004888 618 FLDDYAFLISGLLDLYEF-----GSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSV 692 (725)
Q Consensus 618 ~leDyA~li~aLL~LYe~-----Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv 692 (725)
..-.+++++.|++++++. ++...+++.++++.+.+..+. ++ +|.|+...+ ++ ..-.+.|+.|.
T Consensus 264 WaRGnGW~~~gl~~~l~~lp~~~~~r~~l~~~~~~~a~~l~~~Q-~~-~G~W~~vld-~~---------~~y~EsSaTAm 331 (445)
T 3k11_A 264 WARANGWALLTACELLDVLPEDYPQRPKVMDYFRAHVRGVTALQ-SG-EGFWHQLLD-CN---------DSYLETSATAI 331 (445)
T ss_dssp BHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHTTC-CT-TSCEESBTT-CT---------TSCEEHHHHHH
T ss_pred ecccchHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHhC-CC-CCchhhccC-CC---------CCCCCccHHHH
Confidence 223789999999999997 667889999999999998865 54 564443222 11 11134699999
Q ss_pred HHHHHHHHHHhhCCCCchHHHHHHHHHHHHhh
Q 004888 693 SVINLVRLASIVAGSKSDYYRQNAEHSLYLRQ 724 (725)
Q Consensus 693 ~a~~LlrL~~~t~~~~~~~y~~~A~~~l~~~~ 724 (725)
+|..|++..+. |-.....|+..|++.++.+.
T Consensus 332 faygllkgvr~-G~Ld~~~Y~~~A~ka~~~L~ 362 (445)
T 3k11_A 332 YVYCLAHAINK-GWIDAIAYGPVAQLGWHAVA 362 (445)
T ss_dssp HHHHHHHHHHH-TSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHH
Confidence 99999998875 32222579999999998764
No 45
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=99.11 E-value=6.7e-11 Score=105.72 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=64.5
Q ss_pred HHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEE
Q 004888 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (725)
Q Consensus 130 Al~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vf 209 (725)
.++.+. .+||++|.|+++||++|+.|.... .++++.++.++..++||.++.+++.+.| ++.++|+++|
T Consensus 10 ~~~~~~-~~~~~lv~f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~ 77 (112)
T 2voc_A 10 SFSAET-SEGVVLADFWAPWCGPSKMIAPVL---EELDQEMGDKLKIVKIDVDENQETAGKY--------GVMSIPTLLV 77 (112)
T ss_dssp THHHHH-SSSEEEEEEECTTBGGGGGHHHHH---HHHHHHHTTTCEEEEEETTTCCSHHHHT--------TCCSBSEEEE
T ss_pred HHHHHh-CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCcEEEEEECCCCHHHHHHc--------CCCcccEEEE
Confidence 344444 899999999999999999998654 5677777668999999999999887666 8899999999
Q ss_pred ecCCCCcccc
Q 004888 210 LSPDLKPLMG 219 (725)
Q Consensus 210 l~pdG~~i~~ 219 (725)
+ ++|+++..
T Consensus 78 ~-~~G~~~~~ 86 (112)
T 2voc_A 78 L-KDGEVVET 86 (112)
T ss_dssp E-ETTEEEEE
T ss_pred E-eCCEEEEE
Confidence 9 99998754
No 46
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=99.11 E-value=1.1e-10 Score=104.23 Aligned_cols=86 Identities=20% Similarity=0.196 Sum_probs=67.3
Q ss_pred CccccchHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcC
Q 004888 121 VDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYG 200 (725)
Q Consensus 121 V~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g 200 (725)
|.+....+++++.|+.++||++|.|+++||++|+.|.... .++++... ++..++||.++.+++.+.| +
T Consensus 11 i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~-~~~~~~v~~~~~~~~~~~~--------~ 78 (118)
T 2vm1_A 11 CHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVF---AEYAKKFP-GAIFLKVDVDELKDVAEAY--------N 78 (118)
T ss_dssp CCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHH---HHHHHHCT-TSEEEEEETTTSHHHHHHT--------T
T ss_pred ecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHH---HHHHHHCC-CcEEEEEEcccCHHHHHHc--------C
Confidence 4444456888999999999999999999999999998422 23333332 7999999999888776655 8
Q ss_pred CCCcCcEEEecCCCCcccc
Q 004888 201 GGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 201 ~~G~P~~vfl~pdG~~i~~ 219 (725)
+.++|+++|+ ++|+++..
T Consensus 79 v~~~Pt~~~~-~~g~~~~~ 96 (118)
T 2vm1_A 79 VEAMPTFLFI-KDGEKVDS 96 (118)
T ss_dssp CCSBSEEEEE-ETTEEEEE
T ss_pred CCcCcEEEEE-eCCeEEEE
Confidence 8999999888 78998753
No 47
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}
Probab=99.11 E-value=9e-11 Score=106.70 Aligned_cols=86 Identities=19% Similarity=0.154 Sum_probs=68.0
Q ss_pred CccccchHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcC
Q 004888 121 VDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYG 200 (725)
Q Consensus 121 V~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g 200 (725)
|......+++++.++.++||++|.|+++||++|+.|.... .++++.+. ++..++||.++.+++.+.| +
T Consensus 19 i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~-~v~~~~v~~~~~~~~~~~~--------~ 86 (130)
T 1wmj_A 19 CHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVF---AEYAKKFP-GAVFLKVDVDELKEVAEKY--------N 86 (130)
T ss_dssp CSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHH---HHHHHHCT-TBCCEECCTTTSGGGHHHH--------T
T ss_pred cCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHH---HHHHHHCC-CCEEEEEeccchHHHHHHc--------C
Confidence 4444445889999999999999999999999999998432 23333332 6888999999988887766 8
Q ss_pred CCCcCcEEEecCCCCcccc
Q 004888 201 GGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 201 ~~G~P~~vfl~pdG~~i~~ 219 (725)
+.++|+++|+ ++|+++..
T Consensus 87 v~~~Pt~~~~-~~g~~~~~ 104 (130)
T 1wmj_A 87 VEAMPTFLFI-KDGAEADK 104 (130)
T ss_dssp CCSSCCCCBC-TTTTCCBC
T ss_pred CCccceEEEE-eCCeEEEE
Confidence 8999998887 89998754
No 48
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=99.11 E-value=1e-10 Score=102.80 Aligned_cols=75 Identities=16% Similarity=0.241 Sum_probs=62.7
Q ss_pred HHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecC
Q 004888 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP 212 (725)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~p 212 (725)
...+++||++|.|+++||++|+.|.... .++++.++.++..++||.++.+++.+.| ++.|+|+++|+ +
T Consensus 15 ~~~~~~~~~~v~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~ 82 (108)
T 2trx_A 15 DVLKADGAILVDFWAEWCGPCKMIAPIL---DEIADEYQGKLTVAKLNIDQNPGTAPKY--------GIRGIPTLLLF-K 82 (108)
T ss_dssp HTTTCSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTEEEEEEETTTCTTHHHHT--------TCCSSSEEEEE-E
T ss_pred HHHhcCCeEEEEEECCCCHhHHHHHHHH---HHHHHHhCCCcEEEEEECCCCHHHHHHc--------CCcccCEEEEE-e
Confidence 3357899999999999999999998643 4666667667999999999988877665 88999999999 8
Q ss_pred CCCcccc
Q 004888 213 DLKPLMG 219 (725)
Q Consensus 213 dG~~i~~ 219 (725)
+|+++..
T Consensus 83 ~G~~~~~ 89 (108)
T 2trx_A 83 NGEVAAT 89 (108)
T ss_dssp TTEEEEE
T ss_pred CCEEEEE
Confidence 9998753
No 49
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=99.10 E-value=1.4e-10 Score=104.85 Aligned_cols=80 Identities=15% Similarity=0.248 Sum_probs=63.6
Q ss_pred HHHHHH-HhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCc
Q 004888 128 EEAFAE-ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (725)
Q Consensus 128 ~eAl~~-Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~ 206 (725)
++-+.. ..+.+||++|.|+++||++|+.|... + .++++.+..++..++||.++.+++.+.| ++.++|+
T Consensus 20 ~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~-l--~~~~~~~~~~v~~~~vd~d~~~~l~~~~--------~v~~~Pt 88 (119)
T 1w4v_A 20 GPDFQDRVVNSETPVVVDFHAQWCGPCKILGPR-L--EKMVAKQHGKVVMAKVDIDDHTDLAIEY--------EVSAVPT 88 (119)
T ss_dssp HHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTSSEEEEEETTTTHHHHHHT--------TCCSSSE
T ss_pred hhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHH-H--HHHHHHhcCCeEEEEEeCCCCHHHHHHc--------CCCcccE
Confidence 344444 46789999999999999999999853 3 3566666567999999999888766555 8899999
Q ss_pred EEEecCCCCcccc
Q 004888 207 SVFLSPDLKPLMG 219 (725)
Q Consensus 207 ~vfl~pdG~~i~~ 219 (725)
++|+ ++|+++..
T Consensus 89 ~~~~-~~G~~~~~ 100 (119)
T 1w4v_A 89 VLAM-KNGDVVDK 100 (119)
T ss_dssp EEEE-ETTEEEEE
T ss_pred EEEE-eCCcEEEE
Confidence 9999 89998753
No 50
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.10 E-value=2.7e-10 Score=103.85 Aligned_cols=73 Identities=16% Similarity=0.221 Sum_probs=61.7
Q ss_pred HhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCC
Q 004888 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (725)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pd 213 (725)
..+++||++|.|+++||++|+.|.... .++++.+..++..++||.++.+++.+.| ++.++|+++|++++
T Consensus 31 ~~~~~~~~lv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~~~~ 99 (130)
T 2dml_A 31 VIQSDGLWLVEFYAPWCGHCQRLTPEW---KKAATALKDVVKVGAVNADKHQSLGGQY--------GVQGFPTIKIFGAN 99 (130)
T ss_dssp TTTCSSCEEEEEECTTCSTTGGGHHHH---HHHHHHTTTTSEEEEEETTTCHHHHHHH--------TCCSSSEEEEESSC
T ss_pred HhcCCCeEEEEEECCCCHHHHhhCHHH---HHHHHHhcCceEEEEEeCCCCHHHHHHc--------CCCccCEEEEEeCC
Confidence 457799999999999999999998654 5677777667999999999988777666 88999999999998
Q ss_pred CCcc
Q 004888 214 LKPL 217 (725)
Q Consensus 214 G~~i 217 (725)
|+.+
T Consensus 100 ~~~~ 103 (130)
T 2dml_A 100 KNKP 103 (130)
T ss_dssp TTSC
T ss_pred CCeE
Confidence 8733
No 51
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=99.08 E-value=1.3e-10 Score=107.50 Aligned_cols=86 Identities=12% Similarity=0.079 Sum_probs=68.0
Q ss_pred CccccchHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcC
Q 004888 121 VDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYG 200 (725)
Q Consensus 121 V~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g 200 (725)
|.+...+++++..++.++||++|.|+++||++|+.|.... .++++.. .++..++||.++.+++.+.| +
T Consensus 29 i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l---~~l~~~~-~~v~~~~v~~~~~~~~~~~~--------~ 96 (139)
T 3d22_A 29 ITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYY---IELSENY-PSLMFLVIDVDELSDFSASW--------E 96 (139)
T ss_dssp ECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHH---HHHHHHC-TTSEEEEEETTTSHHHHHHT--------T
T ss_pred eCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHH---HHHHHHC-CCCEEEEEeCcccHHHHHHc--------C
Confidence 3333445888888988999999999999999999998532 2344433 36999999999888776665 8
Q ss_pred CCCcCcEEEecCCCCcccc
Q 004888 201 GGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 201 ~~G~P~~vfl~pdG~~i~~ 219 (725)
+.++|+++|+ ++|+++..
T Consensus 97 v~~~Pt~~~~-~~G~~~~~ 114 (139)
T 3d22_A 97 IKATPTFFFL-RDGQQVDK 114 (139)
T ss_dssp CCEESEEEEE-ETTEEEEE
T ss_pred CCcccEEEEE-cCCeEEEE
Confidence 8999999988 89998754
No 52
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=99.08 E-value=1.4e-10 Score=111.81 Aligned_cols=78 Identities=21% Similarity=0.166 Sum_probs=61.8
Q ss_pred HHHHHHHh--hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcC
Q 004888 128 EEAFAEAR--KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (725)
Q Consensus 128 ~eAl~~Ak--~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P 205 (725)
.+.++++- +++|||+|+|+|+||++|+.|+. +| .++++......+.+|||+++.|++.+.| ++.+.|
T Consensus 29 ~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~P-vl--eelA~e~~~~v~f~kVDVDe~~e~a~~y--------~V~siP 97 (160)
T 2av4_A 29 GWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDE-LL--YKVADDIKNFCVIYLVDITEVPDFNTMY--------ELYDPV 97 (160)
T ss_dssp HHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHH-HH--HHHHHHHTTTEEEEEEETTTCCTTTTTT--------TCCSSE
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCChhHHHHHH-HH--HHHHHHccCCcEEEEEECCCCHHHHHHc--------CCCCCC
Confidence 34444432 57899999999999999999973 44 3566666545889999999999998877 889999
Q ss_pred cEEEecCCCCcc
Q 004888 206 LSVFLSPDLKPL 217 (725)
Q Consensus 206 ~~vfl~pdG~~i 217 (725)
|++|+ -+|+.+
T Consensus 98 T~~fF-k~G~~v 108 (160)
T 2av4_A 98 SVMFF-YRNKHM 108 (160)
T ss_dssp EEEEE-ETTEEE
T ss_pred EEEEE-ECCEEE
Confidence 99888 467776
No 53
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=99.08 E-value=1.2e-10 Score=103.81 Aligned_cols=91 Identities=16% Similarity=0.126 Sum_probs=67.5
Q ss_pred ccCCCCccccchHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHH
Q 004888 116 HAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYV 195 (725)
Q Consensus 116 ha~~~V~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~ 195 (725)
+.++|..+..-..+-++++.+++|+++|.|+++||++|+.|.... .++++... ++..++||.++.+++.+.|
T Consensus 4 ~~~~~~~~~~~~~~~f~~~~~~~k~vlv~f~a~~C~~C~~~~~~l---~~l~~~~~-~v~~~~vd~~~~~~~~~~~---- 75 (112)
T 1syr_A 4 HHHHHMVKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFY---EECSKTYT-KMVFIKVDVDEVSEVTEKE---- 75 (112)
T ss_dssp -----CCEEECSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHH---HHHHHHCT-TSEEEEEETTTTHHHHHHT----
T ss_pred cccceeEEEECCHHHHHHHHccCCeEEEEEECCCCHHHHHHHHHH---HHHHHHcC-CCEEEEEECCCCHHHHHHc----
Confidence 344555555556778888888999999999999999999998533 34444443 6999999999888766555
Q ss_pred HHhcCCCCcCcEEEecCCCCcccc
Q 004888 196 QALYGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 196 q~~~g~~G~P~~vfl~pdG~~i~~ 219 (725)
++.++|+++|+ .+|+++..
T Consensus 76 ----~v~~~Pt~~~~-~~G~~~~~ 94 (112)
T 1syr_A 76 ----NITSMPTFKVY-KNGSSVDT 94 (112)
T ss_dssp ----TCCSSSEEEEE-ETTEEEEE
T ss_pred ----CCCcccEEEEE-ECCcEEEE
Confidence 88999998877 58988753
No 54
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=99.08 E-value=2.2e-10 Score=103.34 Aligned_cols=80 Identities=20% Similarity=0.225 Sum_probs=64.6
Q ss_pred hHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCc
Q 004888 127 GEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (725)
Q Consensus 127 ~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~ 206 (725)
.++.+..|++++||++|.|+++||++|+.|.. .|+ ++++.+. ++..++||.++.+++.+.| ++.++|+
T Consensus 23 ~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~-~l~--~~~~~~~-~~~~~~vd~~~~~~~~~~~--------~v~~~Pt 90 (122)
T 2vlu_A 23 WTMQIEEANTAKKLVVIDFTASWCGPCRIMAP-VFA--DLAKKFP-NAVFLKVDVDELKPIAEQF--------SVEAMPT 90 (122)
T ss_dssp HHHHHHHHHHTTCCEEEEEECTTCHHHHHHHH-HHH--HHHHHCT-TSEEEEEETTTCHHHHHHT--------TCCSSSE
T ss_pred HHHHHHHhhccCCEEEEEEECCCCHHHHHHHH-HHH--HHHHHCC-CcEEEEEECCCCHHHHHHc--------CCCcccE
Confidence 37788888889999999999999999999985 332 4554443 4899999999988776655 8899999
Q ss_pred EEEecCCCCcccc
Q 004888 207 SVFLSPDLKPLMG 219 (725)
Q Consensus 207 ~vfl~pdG~~i~~ 219 (725)
++|+ ++|+++..
T Consensus 91 ~~~~-~~G~~~~~ 102 (122)
T 2vlu_A 91 FLFM-KEGDVKDR 102 (122)
T ss_dssp EEEE-ETTEEEEE
T ss_pred EEEE-eCCEEEEE
Confidence 8877 89998753
No 55
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=99.07 E-value=2.3e-10 Score=106.75 Aligned_cols=80 Identities=20% Similarity=0.303 Sum_probs=67.2
Q ss_pred HHHHH-HHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCc
Q 004888 128 EEAFA-EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (725)
Q Consensus 128 ~eAl~-~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~ 206 (725)
++.+. ...+++||++|.|+++||++|+.|.... .++++.+..++..++||.++.+++.+.| ++.++|+
T Consensus 13 ~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt 81 (140)
T 3hz4_A 13 DMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYF---EEYAKEYGSSAVFGRINIATNPWTAEKY--------GVQGTPT 81 (140)
T ss_dssp HHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTSEEEEEETTTCHHHHHHH--------TCCEESE
T ss_pred hHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHH---HHHHHHhCCceEEEEEECCcCHhHHHHC--------CCCcCCE
Confidence 45555 7778899999999999999999998644 6777778777999999999998877766 8899999
Q ss_pred EEEecCCCCcccc
Q 004888 207 SVFLSPDLKPLMG 219 (725)
Q Consensus 207 ~vfl~pdG~~i~~ 219 (725)
++|+ .+|+++..
T Consensus 82 ~~~~-~~G~~~~~ 93 (140)
T 3hz4_A 82 FKFF-CHGRPVWE 93 (140)
T ss_dssp EEEE-ETTEEEEE
T ss_pred EEEE-eCCcEEEE
Confidence 9988 78988753
No 56
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=99.07 E-value=1.7e-10 Score=100.86 Aligned_cols=73 Identities=15% Similarity=0.196 Sum_probs=62.6
Q ss_pred hhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCC
Q 004888 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (725)
Q Consensus 135 k~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG 214 (725)
.+++||++|.|+++||++|+.|.... .++++.+..++..++||.++.+++.+.| ++.++|+++++ ++|
T Consensus 17 ~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~~G 84 (107)
T 2i4a_A 17 LKASGLVLVDFWAEWCGPCKMIGPAL---GEIGKEFAGKVTVAKVNIDDNPETPNAY--------QVRSIPTLMLV-RDG 84 (107)
T ss_dssp TTCSSEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTSEEEEEEETTTCCHHHHHT--------TCCSSSEEEEE-ETT
T ss_pred HhCCCEEEEEEECCCChhHHHHhHHH---HHHHHHhCCcEEEEEEECCCCHHHHHhc--------CCCccCEEEEE-eCC
Confidence 57899999999999999999998643 5677777668999999999988876665 88999999999 899
Q ss_pred Ccccc
Q 004888 215 KPLMG 219 (725)
Q Consensus 215 ~~i~~ 219 (725)
+++..
T Consensus 85 ~~~~~ 89 (107)
T 2i4a_A 85 KVIDK 89 (107)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98754
No 57
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=99.07 E-value=1.5e-08 Score=111.18 Aligned_cols=284 Identities=17% Similarity=0.136 Sum_probs=181.2
Q ss_pred cHHHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCCC--CCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 004888 334 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWH--VPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDY 411 (725)
Q Consensus 334 ~~~~~~~~~~TL~~ma~gGi~D~v~GGF~RYs~D~~W~--vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~f 411 (725)
.+++.+.+.+.++++.. |.|..+---+|. .+.+. .+-+.+=-|.++.++..+.++|++|+|+.|++.|++.++-
T Consensus 24 ~~~~~~~l~~~~~~l~~--~~~~~~~f~~~~--~~~~~~d~k~~~~W~Wt~G~~~~gl~~~ye~Tgd~~y~~~a~~~~~~ 99 (382)
T 3pmm_A 24 RSELQALIRNVTQNLVN--IKDESGQFLLRL--DDGRVIDTKGWAGWEWTHGVGLYGIYQYYQQTGDIEMRDIIDRWFAD 99 (382)
T ss_dssp HHHHHHHHHHHHHHHHH--CCCTTCTTCEEC--TTSCEECSSSTTSCSHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--ccCccccccccC--CccccccCCCCcCccccHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 35677777778888866 666522222332 21221 2445566688999999999999999999999999998775
Q ss_pred HHHhccCCCCceeeeccCCCccccccccccCcceEEechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCc
Q 004888 412 LRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGK 491 (725)
Q Consensus 412 l~~~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~lg~~~~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~ 491 (725)
+.++ +|... +.|. +++. .+.-++++++|++
T Consensus 100 ~~~~----~~~~~---n~D~-----------~~~~-~~l~~lY~~Tgd~------------------------------- 129 (382)
T 3pmm_A 100 RFAE----GATTK---NVNT-----------MAPF-LTLAYRFEETGRM------------------------------- 129 (382)
T ss_dssp HHHH----CCCCC---CTTT-----------TTTH-HHHHHHHHHHCCG-------------------------------
T ss_pred HHcC----CCCcC---cccc-----------hHHH-HHHHHHHHHhCCH-------------------------------
Confidence 5442 22221 1221 1111 2445666666632
Q ss_pred ceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhh--hc------cCCC-CCCCcchhhhcHHHHHHHHHHHHHHhhh
Q 004888 492 NVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDV--RS------KRPR-PHLDDKVIVSWNGLVISSFARASKILKS 562 (725)
Q Consensus 492 nvL~~~~~~~~~a~~~g~~~e~~~~~l~~~r~kL~~~--R~------~R~~-P~lDdKiitsWNal~I~aLa~A~~vl~d 562 (725)
+..+.+....+.|.+. |. ++.. ......++.+-..+.+..|+++++++||
T Consensus 130 ---------------------~Yl~~a~~~ad~L~~~~~r~~~Ggf~~~~~~~~~~~~~WiDgl~M~~p~La~~~~~tgd 188 (382)
T 3pmm_A 130 ---------------------AYLPWLESWAEWAMHEMPRTEQGGMQHMTLAEENHQQMWDDTLMMTVLPLAKIGKLLNR 188 (382)
T ss_dssp ---------------------GGHHHHHHHHHHHHHTSCBCGGGCBCCCCSSCCCTTEEETTHHHHTHHHHHHHHHHTTC
T ss_pred ---------------------HHHHHHHHHHHHHHhhCCCCcCCCeeeecCCCCCCCcEEecchhhhHHHHHHHHHHHCC
Confidence 0111111112222110 00 0000 0001122222234557789999999998
Q ss_pred hhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec-CCCCC-CC-CCcchHHHHHHHHHHHHHH----
Q 004888 563 EAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR-NGPSK-AP-GFLDDYAFLISGLLDLYEF---- 635 (725)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~-~g~~~-~~-~~leDyA~li~aLL~LYe~---- 635 (725)
++|++.|.+-+....++++|+++|.++|.+. .+... .. ...-.+++++.|+.++++.
T Consensus 189 ----------------~~y~d~A~~q~~~~~~~l~D~~tGl~~h~~~~~~~~~~~~~~WaRG~gW~~~gl~~~l~~l~~p 252 (382)
T 3pmm_A 189 ----------------PQYVEEATYQFLLHVQNLMDRETGLWFHGWNYEGRHNFARARWARGNSWLTMVIPDFLELVDLP 252 (382)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHBCTTTSCBCSEEETTTTBCTTCCCBHHHHHHHHHHHHHHHHHHCCC
T ss_pred ----------------HHHHHHHHHHHHHHHHHccCCCCCCeeeeccCCCCCCCCcceecccccHHHHHHHHHHHhhcCC
Confidence 7899999999999999999999999999864 33221 12 2223789999999999998
Q ss_pred ---cCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHHHHH--hhCCCCch
Q 004888 636 ---GSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLAS--IVAGSKSD 710 (725)
Q Consensus 636 ---Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~--~t~~~~~~ 710 (725)
++++++++.++++.+.+.++- + ++|.|+... +++. .-...|+.|++|..|++..+ +++ +
T Consensus 253 ~~~~~~~~~~~~~~~~a~~~~~~q-~-~~G~W~~~~-d~~~---------~y~EsSatA~~ay~ll~~~~~g~l~----~ 316 (382)
T 3pmm_A 253 EGNAVRRYLITVLDAQIAALAECQ-D-DSGLWHTLL-DDPH---------SYLEASATAGFAYGILKAVRKRYVG----Q 316 (382)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHC-C-TTSCEESBT-TCTT---------SCEEHHHHHHHHHHHHHHHHTTSSC----G
T ss_pred cchhhHHHHHHHHHHHHHHHHHcC-C-CCCChhhcc-CCCC---------CCccccHHHHHHHHHHHHHHcCCCc----H
Confidence 667889999999999998875 5 356444332 2221 11246999999999999988 443 5
Q ss_pred HHHHHHHHHHHHhh
Q 004888 711 YYRQNAEHSLYLRQ 724 (725)
Q Consensus 711 ~y~~~A~~~l~~~~ 724 (725)
.|+..|+++++.+.
T Consensus 317 ~Y~~~a~ka~~~l~ 330 (382)
T 3pmm_A 317 HYAGVAEKAIRGIV 330 (382)
T ss_dssp GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 79999999998764
No 58
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=99.06 E-value=1e-10 Score=102.35 Aligned_cols=79 Identities=19% Similarity=0.273 Sum_probs=64.6
Q ss_pred HHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEE
Q 004888 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (725)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~v 208 (725)
+.++.+.+++||++|.|+++||++|+.|.... .++++.+..++..++||.++.+++.+.| ++.++|+++
T Consensus 9 ~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~ 77 (109)
T 2yzu_A 9 QNFDETLGQHPLVLVDFWAEWCAPCRMIAPIL---EEIAKEYEGKLLVAKLDVDENPKTAMRY--------RVMSIPTVI 77 (109)
T ss_dssp TTHHHHHHHCSEEEEEEECTTCHHHHHHHHHH---HHHHHHTBTTBEEEEEETTTCHHHHHHT--------TCCSSSEEE
T ss_pred hHHHHHhcCCCeEEEEEECCCCHHHHHhhHHH---HHHHHHhhCceEEEEEECCCCHhHHHhC--------CCCcCCEEE
Confidence 34455567899999999999999999998643 5677777667999999999888776655 889999999
Q ss_pred EecCCCCcccc
Q 004888 209 FLSPDLKPLMG 219 (725)
Q Consensus 209 fl~pdG~~i~~ 219 (725)
|+ ++|+++..
T Consensus 78 ~~-~~g~~~~~ 87 (109)
T 2yzu_A 78 LF-KDGQPVEV 87 (109)
T ss_dssp EE-ETTEEEEE
T ss_pred EE-eCCcEeee
Confidence 99 89998753
No 59
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=99.06 E-value=3.8e-11 Score=110.12 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=55.5
Q ss_pred HHhhcCCcEEEEEeccCChhhHhhhhhccC---C--------HHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCC
Q 004888 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFE---D--------EGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGG 201 (725)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~---d--------~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~ 201 (725)
...+++|||+|.|+++||++|..|+.++|. . .++++.+..++..++||.++.+++.+.| |+
T Consensus 16 ~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~l~~~~--------~v 87 (123)
T 1oaz_A 16 DVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKY--------GI 87 (123)
T ss_dssp HTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCTTTGGGG--------TC
T ss_pred HHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHHc--------CC
Confidence 346789999999999999944444444443 1 2345555557999999999998887665 89
Q ss_pred CCcCcEEEecCCCCcccc
Q 004888 202 GGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 202 ~G~P~~vfl~pdG~~i~~ 219 (725)
.|+|+++|+ ++|+++..
T Consensus 88 ~~~Pt~~~~-~~G~~~~~ 104 (123)
T 1oaz_A 88 RGIPTLLLF-KNGEVAAT 104 (123)
T ss_dssp CBSSEEEEE-ESSSEEEE
T ss_pred CccCEEEEE-ECCEEEEE
Confidence 999999999 99998753
No 60
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=99.05 E-value=5.1e-11 Score=105.14 Aligned_cols=77 Identities=16% Similarity=0.204 Sum_probs=53.1
Q ss_pred HHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEE
Q 004888 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (725)
Q Consensus 130 Al~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vf 209 (725)
.++.+.+++|||+|.|+++||+.|+.|.... .++++.+ .++..++||.++.+++.+.| ++.++|+++|
T Consensus 10 ~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~-~~~~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~ 77 (105)
T 4euy_A 10 ELATYIEEQQLVLLFIKTENCGVCDVMLRKV---NYVLENY-NYVEKIEILLQDMQEIAGRY--------AVFTGPTVLL 77 (105)
T ss_dssp CCSSSTTCSSEEEEEEEESSCHHHHHHHHHH---HHHHHTC-TTEEEEEEEECCC-----------------CCCCEEEE
T ss_pred HHHHHHhcCCCEEEEEeCCCCcchHHHHHHH---HHHHHHc-CCceEEEEECCCCHHHHHhc--------CCCCCCEEEE
Confidence 3444557899999999999999999997422 2333333 26899999999999887766 7889999999
Q ss_pred ecCCCCcccc
Q 004888 210 LSPDLKPLMG 219 (725)
Q Consensus 210 l~pdG~~i~~ 219 (725)
+. +|+++..
T Consensus 78 ~~-~G~~~~~ 86 (105)
T 4euy_A 78 FY-NGKEILR 86 (105)
T ss_dssp EE-TTEEEEE
T ss_pred Ee-CCeEEEE
Confidence 95 8998754
No 61
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=99.05 E-value=2.1e-10 Score=101.72 Aligned_cols=76 Identities=18% Similarity=0.254 Sum_probs=61.4
Q ss_pred HHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEec
Q 004888 132 AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 211 (725)
Q Consensus 132 ~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~ 211 (725)
+...+++||++|.|+++||++|+.|... + .++++.+..++..++||.++.+++.+.| ++.++|+++|+
T Consensus 17 ~~~~~~~~~~vv~f~~~~C~~C~~~~~~-l--~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~- 84 (112)
T 1t00_A 17 QDVLKNDKPVLVDFWAAWCGPCRQIAPS-L--EAIAAEYGDKIEIVKLNIDENPGTAAKY--------GVMSIPTLNVY- 84 (112)
T ss_dssp HHTTTCSSCEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTTCEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-
T ss_pred HHHhhCCCeEEEEEECCCCHhHHhcCHH-H--HHHHHHhcCCeEEEEEEcCCCHHHHHhC--------CCCcccEEEEE-
Confidence 3445679999999999999999999854 3 3566666567999999999888776655 88999998887
Q ss_pred CCCCcccc
Q 004888 212 PDLKPLMG 219 (725)
Q Consensus 212 pdG~~i~~ 219 (725)
++|+++..
T Consensus 85 ~~G~~~~~ 92 (112)
T 1t00_A 85 QGGEVAKT 92 (112)
T ss_dssp ETTEEEEE
T ss_pred eCCEEEEE
Confidence 79998753
No 62
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}
Probab=99.05 E-value=9.9e-11 Score=107.26 Aligned_cols=78 Identities=15% Similarity=0.245 Sum_probs=65.3
Q ss_pred HHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEE
Q 004888 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (725)
Q Consensus 130 Al~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vf 209 (725)
.++.+..++|||+|.|+++||++|+.|.... .++++.++.++..++||.++.+++.+.| ++.|+|+++|
T Consensus 34 ~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~v~~~~vd~d~~~~l~~~~--------~v~~~Pt~~~ 102 (128)
T 3ul3_B 34 IINGVNMKNTVIVLYFFAKWCQACTMQSTEM---DKLQKYYGKRIYLLKVDLDKNESLARKF--------SVKSLPTIIL 102 (128)
T ss_dssp SSSBTTSCCSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGEEEEEEEGGGCHHHHHHT--------TCCSSSEEEE
T ss_pred HHHHHHccCCEEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCeEEEEEECCCCHHHHHHc--------CCCCcCEEEE
Confidence 3455667899999999999999999998654 5677777778999999999888776665 8999999999
Q ss_pred ecCCCCcccc
Q 004888 210 LSPDLKPLMG 219 (725)
Q Consensus 210 l~pdG~~i~~ 219 (725)
+ .+|+++..
T Consensus 103 ~-~~G~~~~~ 111 (128)
T 3ul3_B 103 L-KNKTMLAR 111 (128)
T ss_dssp E-ETTEEEEE
T ss_pred E-ECCEEEEE
Confidence 9 78988754
No 63
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=99.05 E-value=4.4e-10 Score=99.77 Aligned_cols=72 Identities=15% Similarity=0.184 Sum_probs=55.1
Q ss_pred hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHH-hcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCC
Q 004888 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLL-NDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~l-n~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG 214 (725)
..+||++|.|+++||++|+.|.... .++++.+ +.++..++||.++.+++.+.| ++.++|+++|+ .+|
T Consensus 19 ~~~~~~~v~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~G 86 (112)
T 3d6i_A 19 AGDKLIVLYFHTSWAEPCKALKQVF---EAISNEPSNSNVSFLSIDADENSEISELF--------EISAVPYFIII-HKG 86 (112)
T ss_dssp TTTCCEEEEEECCC--CHHHHHHHH---HHHHHCGGGTTSEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-ETT
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHH---HHHHHhcCCCCEEEEEEecccCHHHHHHc--------CCCcccEEEEE-ECC
Confidence 5599999999999999999998532 2344433 346999999999988776655 88999999988 699
Q ss_pred Ccccc
Q 004888 215 KPLMG 219 (725)
Q Consensus 215 ~~i~~ 219 (725)
+++..
T Consensus 87 ~~~~~ 91 (112)
T 3d6i_A 87 TILKE 91 (112)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98754
No 64
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=99.05 E-value=2.4e-10 Score=99.58 Aligned_cols=89 Identities=16% Similarity=0.259 Sum_probs=67.7
Q ss_pred HhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCC
Q 004888 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (725)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pd 213 (725)
..+.+||++|.|+++||++|+.|.... .++++.+..++..++||.++.+++.+.| ++.++|+++++ ++
T Consensus 14 ~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~~ 81 (105)
T 1fb6_A 14 VLESEVPVMVDFWAPWCGPCKLIAPVI---DELAKEYSGKIAVYKLNTDEAPGIATQY--------NIRSIPTVLFF-KN 81 (105)
T ss_dssp TTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-ET
T ss_pred HhcCCCcEEEEEECCCChHHHHHHHHH---HHHHHHhcCceEEEEEcCcchHHHHHhC--------CCCcccEEEEE-eC
Confidence 345799999999999999999998643 4667777667999999999888776655 88999998877 79
Q ss_pred CCcccc-ccccCCCCCCCcchHHHHHHH
Q 004888 214 LKPLMG-GTYFPPEDKYGRPGFKTILRK 240 (725)
Q Consensus 214 G~~i~~-~tY~p~~~~~~~~~F~~~L~~ 240 (725)
|+++.. .++.+++ .+.+.|++
T Consensus 82 g~~~~~~~G~~~~~------~l~~~l~~ 103 (105)
T 1fb6_A 82 GERKESIIGAVPKS------TLTDSIEK 103 (105)
T ss_dssp TEEEEEEEECCCHH------HHHHHHHH
T ss_pred CeEEEEEecCCCHH------HHHHHHHh
Confidence 998754 2344422 45555554
No 65
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=99.04 E-value=1.6e-10 Score=100.89 Aligned_cols=78 Identities=17% Similarity=0.199 Sum_probs=63.6
Q ss_pred HHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEE
Q 004888 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (725)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~v 208 (725)
+.++.+. ++||++|.|+++||++|+.|.... .++++.+..++..++||.++.+++.+.| ++.++|+++
T Consensus 11 ~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~ 78 (106)
T 3die_A 11 ADFDSKV-ESGVQLVDFWATACGPCKMIAPVL---EELAADYEGKADILKLDVDENPSTAAKY--------EVMSIPTLI 78 (106)
T ss_dssp TTHHHHS-CSSEEEEEEECSBCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTCHHHHHHT--------TCCSBSEEE
T ss_pred HHHHHHh-cCCcEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCcEEEEEECCcCHHHHHhC--------CCcccCEEE
Confidence 3444555 899999999999999999998644 5667777667999999999988876665 889999999
Q ss_pred EecCCCCcccc
Q 004888 209 FLSPDLKPLMG 219 (725)
Q Consensus 209 fl~pdG~~i~~ 219 (725)
|+. +|+++..
T Consensus 79 ~~~-~G~~~~~ 88 (106)
T 3die_A 79 VFK-DGQPVDK 88 (106)
T ss_dssp EEE-TTEEEEE
T ss_pred EEe-CCeEEEE
Confidence 995 8988754
No 66
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Probab=99.04 E-value=3e-10 Score=102.38 Aligned_cols=78 Identities=15% Similarity=0.169 Sum_probs=64.3
Q ss_pred HHHH-HHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCc
Q 004888 128 EEAF-AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (725)
Q Consensus 128 ~eAl-~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~ 206 (725)
.+.+ +...+.+||++|.|+++||++|+.|.... .++++.+..++..++||.++.+++.+.| ++.++|+
T Consensus 10 ~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt 78 (122)
T 3aps_A 10 PQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEF---ELLARMIKGKVRAGKVDCQAYPQTCQKA--------GIKAYPS 78 (122)
T ss_dssp HHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTCEEEEEETTTCHHHHHHT--------TCCSSSE
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEeCcCCHHHHHHc--------CCCccce
Confidence 3445 56778899999999999999999998643 4677777668999999999988776655 8899999
Q ss_pred EEEecCCCCc
Q 004888 207 SVFLSPDLKP 216 (725)
Q Consensus 207 ~vfl~pdG~~ 216 (725)
++|++++|+.
T Consensus 79 ~~~~~~~~~~ 88 (122)
T 3aps_A 79 VKLYQYERAK 88 (122)
T ss_dssp EEEEEEEGGG
T ss_pred EEEEeCCCcc
Confidence 9999888774
No 67
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Probab=99.03 E-value=3e-10 Score=103.00 Aligned_cols=80 Identities=19% Similarity=0.249 Sum_probs=64.1
Q ss_pred HHHHH-HHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCc
Q 004888 128 EEAFA-EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (725)
Q Consensus 128 ~eAl~-~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~ 206 (725)
.+.+. ..++++||++|.|+++||++|+.|.... .++++.+ .++..++||.++.+++.+.| ++.++|+
T Consensus 12 ~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l---~~l~~~~-~~v~~~~vd~~~~~~~~~~~--------~i~~~Pt 79 (118)
T 2f51_A 12 HEALLNRIKEAPGLVLVDFFATWCGPCQRLGQIL---PSIAEAN-KDVTFIKVDVDKNGNAADAY--------GVSSIPA 79 (118)
T ss_dssp HHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHC-TTSEEEEEETTTCHHHHHHT--------TCCSSSE
T ss_pred HHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHC-CCeEEEEEECCCCHHHHHhc--------CCCCCCE
Confidence 44554 5667899999999999999999998643 4566655 67999999999988776655 8899999
Q ss_pred EEEecC---CCCcccc
Q 004888 207 SVFLSP---DLKPLMG 219 (725)
Q Consensus 207 ~vfl~p---dG~~i~~ 219 (725)
++|++. +|+++..
T Consensus 80 ~~~~~~~~~~G~~~~~ 95 (118)
T 2f51_A 80 LFFVKKEGNEIKTLDQ 95 (118)
T ss_dssp EEEEEEETTEEEEEEE
T ss_pred EEEEeCCCCcceEEEe
Confidence 999977 4777754
No 68
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.03 E-value=2.5e-10 Score=105.39 Aligned_cols=77 Identities=18% Similarity=0.268 Sum_probs=61.5
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcC---cEEEEEcCCCCcchHHHHHHHHHHhcCCCCc
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW---FVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~---FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~ 204 (725)
.+.++.+.+++|+++|.|+++||++|+.|.... .++++.+... ++.++||.++.+++.+.| ++.++
T Consensus 24 ~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~--------~v~~~ 92 (140)
T 2dj1_A 24 DGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEY---EKIASTLKDNDPPIAVAKIDATSASMLASKF--------DVSGY 92 (140)
T ss_dssp TTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHH---HHHHHHHHSSSSCCEEEEECTTTCHHHHHHT--------TCCSS
T ss_pred hHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHH---HHHHHHHhccCCceEEEEEeCcccHHHHHHC--------CCCcc
Confidence 445666667899999999999999999998543 2555666544 999999999887776555 88999
Q ss_pred CcEEEecCCCCc
Q 004888 205 PLSVFLSPDLKP 216 (725)
Q Consensus 205 P~~vfl~pdG~~ 216 (725)
|+++|+ .+|++
T Consensus 93 Pt~~~~-~~G~~ 103 (140)
T 2dj1_A 93 PTIKIL-KKGQA 103 (140)
T ss_dssp SEEEEE-ETTEE
T ss_pred CeEEEE-ECCcE
Confidence 999999 78883
No 69
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=99.03 E-value=3.1e-10 Score=107.79 Aligned_cols=78 Identities=12% Similarity=0.077 Sum_probs=61.4
Q ss_pred HHHHHHHh--hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcC
Q 004888 128 EEAFAEAR--KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (725)
Q Consensus 128 ~eAl~~Ak--~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P 205 (725)
.+.++.+. +++|||+|+|+++||+.|+.|.... .++++.+.+.+..++||.++.+++.+.| ++.++|
T Consensus 11 ~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l---~~l~~~~~~~~~~~~vd~d~~~~l~~~~--------~v~~~P 79 (149)
T 3gix_A 11 KKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDIL---SKTSSDLSKMAAIYLVDVDQTAVYTQYF--------DISYIP 79 (149)
T ss_dssp HHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHH---HHHHTTTTTTEEEEEEETTTCCHHHHHT--------TCCSSS
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHccCceEEEEEECCcCHHHHHHc--------CCCccC
Confidence 44555554 5799999999999999999998432 2444445455999999999999887766 889999
Q ss_pred cEEEecCCCCcc
Q 004888 206 LSVFLSPDLKPL 217 (725)
Q Consensus 206 ~~vfl~pdG~~i 217 (725)
+++ +..+|+++
T Consensus 80 t~~-~~~~G~~v 90 (149)
T 3gix_A 80 STV-FFFNGQHM 90 (149)
T ss_dssp EEE-EEETTEEE
T ss_pred eEE-EEECCeEE
Confidence 999 56789888
No 70
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=99.03 E-value=9e-10 Score=120.21 Aligned_cols=137 Identities=20% Similarity=0.227 Sum_probs=106.6
Q ss_pred hhhc---HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCC
Q 004888 542 IVSW---NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGF 618 (725)
Q Consensus 542 itsW---Nal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~ 618 (725)
-++| ||+++.+|+++++++|| ++|++.|++.++++. ++ +|.+. ++.+ .
T Consensus 36 ~~~W~w~~G~~~~gl~~~y~~tgd----------------~~y~~~a~~~~~~~~----~~-~g~l~--~~~~------~ 86 (373)
T 1nc5_A 36 ANRWHYHQGVFLCGVLRLWEATGE----------------KRYFEYAKAYADLLI----DD-NGNLL--FRRD------E 86 (373)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHB----CT-TCCBC--CCTT------C
T ss_pred CCCcchhHHHHHHHHHHHHHHhCC----------------HHHHHHHHHHHHHHh----CC-CCccc--CCCC------C
Confidence 5789 99999999999999998 789999999999874 32 34443 3433 2
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHH
Q 004888 619 LDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLV 698 (725)
Q Consensus 619 leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~Ll 698 (725)
++|++ ++.++++||++|||++|++.|.++.+.+..+| +.+.|+||.+..... +...|+ .-.++..|.
T Consensus 87 lDd~~-~g~~ll~lY~~Tgd~~yl~~a~~la~~l~~~~-r~~~G~fw~~~~~~~------~~w~D~-----l~m~~p~L~ 153 (373)
T 1nc5_A 87 LDAIQ-AGLILFPLYEQTKDERYVKAAKRLRSLYGTLN-RTSEGGFWHKDGYPY------QMWLDG-----LYMGGPFAL 153 (373)
T ss_dssp GGGTG-GGGGHHHHHHHHCCHHHHHHHHHHHGGGGTSC-BCTTSCBCSCTTSTT------EEETHH-----HHHHHHHHH
T ss_pred cchHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc-CCCCCCeeccCCCCC------eEEeCc-----HHHHHHHHH
Confidence 88888 67899999999999999999999999997766 666788876532111 112232 125688899
Q ss_pred HHHHhhCCCCchHHHHHHHHHHHHh
Q 004888 699 RLASIVAGSKSDYYRQNAEHSLYLR 723 (725)
Q Consensus 699 rL~~~t~~~~~~~y~~~A~~~l~~~ 723 (725)
+++.+||+ +.|.+.|.+.+..+
T Consensus 154 ~l~~~tgd---~~y~d~A~~~~~~~ 175 (373)
T 1nc5_A 154 KYANLKQE---TELFDQVVLQESLM 175 (373)
T ss_dssp HHHHHHTC---THHHHHHHHHHHHH
T ss_pred HHHHHHCC---HHHHHHHHHHHHHH
Confidence 99999997 68999999887765
No 71
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=99.02 E-value=5.3e-10 Score=98.56 Aligned_cols=71 Identities=10% Similarity=0.047 Sum_probs=57.4
Q ss_pred hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCC
Q 004888 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~ 215 (725)
+++||++|.|+++||++|+.|.... .++++.+ .++..++||.++.+++.+.| ++.++|+++|+ .+|+
T Consensus 19 ~~~~~v~v~f~a~wC~~C~~~~~~~---~~~~~~~-~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~G~ 85 (107)
T 1gh2_A 19 AGSRLAVVKFTMRGCGPCLRIAPAF---SSMSNKY-PQAVFLEVDVHQCQGTAATN--------NISATPTFQFF-RNKV 85 (107)
T ss_dssp TTTSCEEEEEECSSCHHHHHHHHHH---HHHHHHC-TTSEEEEEETTTSHHHHHHT--------TCCSSSEEEEE-ETTE
T ss_pred CCCCEEEEEEECCCChhhHHHHHHH---HHHHHHC-CCcEEEEEECccCHHHHHhc--------CCCcccEEEEE-ECCe
Confidence 5799999999999999999998532 2444444 47999999999888776655 88999999988 7898
Q ss_pred cccc
Q 004888 216 PLMG 219 (725)
Q Consensus 216 ~i~~ 219 (725)
++..
T Consensus 86 ~~~~ 89 (107)
T 1gh2_A 86 RIDQ 89 (107)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7753
No 72
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=6.7e-10 Score=101.26 Aligned_cols=73 Identities=15% Similarity=0.147 Sum_probs=61.0
Q ss_pred HhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHh----cCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEE
Q 004888 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN----DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (725)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln----~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vf 209 (725)
..+.+|+++|.|+++||++|+.|.... .++++.++ .++..++||.++.+++.+.| ++.++|+++|
T Consensus 21 ~~~~~~~~lv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~ 89 (133)
T 1x5d_A 21 VLDSEDVWMVEFYAPWCGHCKNLEPEW---AAAASEVKEQTKGKVKLAAVDATVNQVLASRY--------GIRGFPTIKI 89 (133)
T ss_dssp TTTSSSEEEEEEECTTCHHHHTHHHHH---HHHHHHHHHHTTTSEEEEEEETTTCCHHHHHH--------TCCSSSEEEE
T ss_pred HhcCCCeEEEEEECCCCHHHHhhcHHH---HHHHHHHHhhcCCcEEEEEEECCCCHHHHHhC--------CCCeeCeEEE
Confidence 456799999999999999999998644 46676676 67999999999988887766 8899999999
Q ss_pred ecCCCCccc
Q 004888 210 LSPDLKPLM 218 (725)
Q Consensus 210 l~pdG~~i~ 218 (725)
+++ |+.+.
T Consensus 90 ~~~-g~~~~ 97 (133)
T 1x5d_A 90 FQK-GESPV 97 (133)
T ss_dssp EET-TEEEE
T ss_pred EeC-CCceE
Confidence 988 77553
No 73
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=99.02 E-value=5.1e-10 Score=97.68 Aligned_cols=70 Identities=13% Similarity=0.160 Sum_probs=57.0
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCc
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~ 216 (725)
++||++|.|+++||+.|+.|.... .++++.+. ++..++||.++.+++.+.| ++.++|+++|+ .+|+.
T Consensus 19 ~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~-~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~g~~ 85 (105)
T 3m9j_A 19 GDKLVVVDFSATWCGPCKMIKPFF---HSLSEKYS-NVIFLEVDVDDCQDVASES--------EVKSMPTFQFF-KKGQK 85 (105)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHH---HHHHHHST-TSEEEEEETTTCHHHHHHT--------TCCBSSEEEEE-ETTEE
T ss_pred CCCeEEEEEECCCChhhHHHHHHH---HHHHHHcc-CeEEEEEEhhhhHHHHHHc--------CCCcCcEEEEE-ECCeE
Confidence 799999999999999999998533 33444443 5899999999988776655 88999999999 78888
Q ss_pred ccc
Q 004888 217 LMG 219 (725)
Q Consensus 217 i~~ 219 (725)
+..
T Consensus 86 ~~~ 88 (105)
T 3m9j_A 86 VGE 88 (105)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 74
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=99.02 E-value=2.5e-10 Score=103.00 Aligned_cols=79 Identities=18% Similarity=0.191 Sum_probs=63.6
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcE
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~ 207 (725)
++.++.+.+++||++|.|+++||++|+.|... + .++++.+. ++..++||.++.+++.+.| ++.++|++
T Consensus 20 ~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~-l--~~~~~~~~-~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~ 87 (114)
T 2oe3_A 20 LTEFRNLIKQNDKLVIDFYATWCGPCKMMQPH-L--TKLIQAYP-DVRFVKCDVDESPDIAKEC--------EVTAMPTF 87 (114)
T ss_dssp HHHHHHHHHHCSEEEEEEECTTCHHHHHTHHH-H--HHHHHHCT-TSEEEEEETTTCHHHHHHT--------TCCSBSEE
T ss_pred HHHHHHHHhCCCEEEEEEECCCCHHHHHHHHH-H--HHHHHHCC-CCEEEEEECCCCHHHHHHC--------CCCcccEE
Confidence 67788888899999999999999999999853 2 24444443 4899999999888776655 88999999
Q ss_pred EEecCCCCcccc
Q 004888 208 VFLSPDLKPLMG 219 (725)
Q Consensus 208 vfl~pdG~~i~~ 219 (725)
+|+ ++|+++..
T Consensus 88 ~~~-~~G~~~~~ 98 (114)
T 2oe3_A 88 VLG-KDGQLIGK 98 (114)
T ss_dssp EEE-ETTEEEEE
T ss_pred EEE-eCCeEEEE
Confidence 887 89998743
No 75
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=99.01 E-value=2.5e-10 Score=105.23 Aligned_cols=74 Identities=15% Similarity=0.183 Sum_probs=62.2
Q ss_pred HhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCC
Q 004888 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (725)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pd 213 (725)
..+.+||++|.|+++||++|+.|.... .++++.+..++..++||.++.+++.+.| ++.++|+++|+ ++
T Consensus 36 ~~~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~-~~ 103 (128)
T 2o8v_B 36 VLKADGAILVDFWAEWCGPAKMIAPIL---DEIADEYQGKLTVAKLNIDQNPGTAPKY--------GIRGIPTLLLF-KN 103 (128)
T ss_dssp TTTCSSEEEEEEECSSCHHHHHTHHHH---HHHHHHTTTTEEEEEEETTTCCTTSGGG--------TCCSSSEEEEE-ET
T ss_pred HHhcCCEEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCeEEEEEECCCCHHHHHHc--------CCCccCEEEEE-eC
Confidence 357899999999999999999998543 4666667667999999999988876665 88999999999 89
Q ss_pred CCcccc
Q 004888 214 LKPLMG 219 (725)
Q Consensus 214 G~~i~~ 219 (725)
|+++..
T Consensus 104 G~~~~~ 109 (128)
T 2o8v_B 104 GEVAAT 109 (128)
T ss_dssp TEEEEE
T ss_pred CEEEEE
Confidence 998753
No 76
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=99.00 E-value=6.3e-10 Score=106.23 Aligned_cols=80 Identities=21% Similarity=0.312 Sum_probs=67.4
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcE
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~ 207 (725)
++.++.+.+.+||++|+|+++||++|+.|... | .++++.+..++..++||.++.+++.+.| ++.++|++
T Consensus 54 ~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~-l--~~la~~~~~~v~~~~vd~~~~~~l~~~~--------~i~~~Pt~ 122 (155)
T 2ppt_A 54 PAILARAERDDLPLLVDFWAPWCGPCRQMAPQ-F--QAAAATLAGQVRLAKIDTQAHPAVAGRH--------RIQGIPAF 122 (155)
T ss_dssp HHHHHHHTTCSSCEEEEEECTTCHHHHHHHHH-H--HHHHHHHTTTCEEEEEETTTSTHHHHHT--------TCCSSSEE
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHHHHHH-H--HHHHHHccCCEEEEEEeCCccHHHHHHc--------CCCcCCEE
Confidence 56777776889999999999999999999864 3 4677777767999999999998877665 89999999
Q ss_pred EEecCCCCcccc
Q 004888 208 VFLSPDLKPLMG 219 (725)
Q Consensus 208 vfl~pdG~~i~~ 219 (725)
+|+ .+|+++..
T Consensus 123 ~~~-~~G~~~~~ 133 (155)
T 2ppt_A 123 ILF-HKGRELAR 133 (155)
T ss_dssp EEE-ETTEEEEE
T ss_pred EEE-eCCeEEEE
Confidence 999 79998753
No 77
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=99.00 E-value=5.7e-10 Score=104.60 Aligned_cols=80 Identities=15% Similarity=0.159 Sum_probs=65.7
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcE
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~ 207 (725)
.+.++.+.+++||++|.|+++||++|+.|.... .++++.+..++..++||.++.+++.+.| ++.++|++
T Consensus 45 ~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~~~~~~vd~~~~~~l~~~~--------~v~~~Pt~ 113 (148)
T 3p2a_A 45 AETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIF---AETAAERAGKVRFVKVNTEAEPALSTRF--------RIRSIPTI 113 (148)
T ss_dssp TTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTCHHHHHHT--------TCCSSSEE
T ss_pred HHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHH---HHHHHHcCCceEEEEEECcCCHHHHHHC--------CCCccCEE
Confidence 455666668999999999999999999997533 4566666667999999999998877665 89999999
Q ss_pred EEecCCCCcccc
Q 004888 208 VFLSPDLKPLMG 219 (725)
Q Consensus 208 vfl~pdG~~i~~ 219 (725)
+|+ .+|+++..
T Consensus 114 ~~~-~~G~~~~~ 124 (148)
T 3p2a_A 114 MLY-RNGKMIDM 124 (148)
T ss_dssp EEE-ETTEEEEE
T ss_pred EEE-ECCeEEEE
Confidence 998 58988753
No 78
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=99.00 E-value=3.9e-10 Score=102.43 Aligned_cols=80 Identities=16% Similarity=0.196 Sum_probs=64.0
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCc
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~ 206 (725)
.+.++++.+++|+++|.|+++||++|+.|.... .++++.+.. ++..++||.++.+++.+.| ++.++|+
T Consensus 23 ~~~f~~~l~~~k~vvv~f~a~~C~~C~~~~~~l---~~l~~~~~~~~v~~~~vd~d~~~~~~~~~--------~v~~~Pt 91 (121)
T 2j23_A 23 YDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVF---EKISDTPAGDKVGFYKVDVDEQSQIAQEV--------GIRAMPT 91 (121)
T ss_dssp HHHHHHHHSSSSCEEEEEECTTCSTHHHHHHHH---HHHHTSTHHHHSEEEEEETTTCHHHHHHH--------TCCSSSE
T ss_pred HHHHHHHHcCCCEEEEEEECCCCHhHHHHHHHH---HHHHHHCcCCcEEEEEEECcCCHHHHHHc--------CCCcccE
Confidence 567777778999999999999999999998533 344444443 3999999999988877666 8899999
Q ss_pred EEEecCCCCcccc
Q 004888 207 SVFLSPDLKPLMG 219 (725)
Q Consensus 207 ~vfl~pdG~~i~~ 219 (725)
++|+ ++|+++..
T Consensus 92 ~~~~-~~G~~~~~ 103 (121)
T 2j23_A 92 FVFF-KNGQKIDT 103 (121)
T ss_dssp EEEE-ETTEEEEE
T ss_pred EEEE-ECCeEEee
Confidence 9988 58988754
No 79
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=99.00 E-value=5.9e-10 Score=105.65 Aligned_cols=79 Identities=18% Similarity=0.197 Sum_probs=61.7
Q ss_pred HHHHHHHhhc--CCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcC
Q 004888 128 EEAFAEARKR--DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (725)
Q Consensus 128 ~eAl~~Ak~e--~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P 205 (725)
.+.++.+.++ +||++|.|+++||++|+.|.... .++++.. .++..++||.++.+++.+.| ++.|+|
T Consensus 20 ~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l---~~l~~~~-~~v~~~~vd~~~~~~l~~~~--------~v~~~P 87 (153)
T 2wz9_A 20 AGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVM---AELAKEL-PQVSFVKLEAEGVPEVSEKY--------EISSVP 87 (153)
T ss_dssp HHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHH---HHHHHHC-TTSEEEEEETTTSHHHHHHT--------TCCSSS
T ss_pred HHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHH---HHHHHHc-CCeEEEEEECCCCHHHHHHc--------CCCCCC
Confidence 4555555555 99999999999999999998432 2343333 37999999999988776655 899999
Q ss_pred cEEEecCCCCcccc
Q 004888 206 LSVFLSPDLKPLMG 219 (725)
Q Consensus 206 ~~vfl~pdG~~i~~ 219 (725)
+++|++ +|+++..
T Consensus 88 t~~~~~-~G~~~~~ 100 (153)
T 2wz9_A 88 TFLFFK-NSQKIDR 100 (153)
T ss_dssp EEEEEE-TTEEEEE
T ss_pred EEEEEE-CCEEEEE
Confidence 999999 9998753
No 80
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Probab=99.00 E-value=5.7e-10 Score=100.14 Aligned_cols=69 Identities=12% Similarity=0.161 Sum_probs=56.2
Q ss_pred hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCC
Q 004888 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG 214 (725)
..+||++|.|+++||++|+.|.. .+.++.++ ++..++||.++.+++.+.| ++.++|+++|+ ++|
T Consensus 31 ~~~~~~vv~f~a~wC~~C~~~~~------~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~G 95 (117)
T 2xc2_A 31 HKNKLVVVDFFATWCGPCKTIAP------LFKELSEKYDAIFVKVDVDKLEETARKY--------NISAMPTFIAI-KNG 95 (117)
T ss_dssp TTTSCEEEEEECTTCHHHHHHHH------HHHHHHTTSSSEEEEEETTTSHHHHHHT--------TCCSSSEEEEE-ETT
T ss_pred CCCCEEEEEEECCCCHhHHHHhH------HHHHHHHHcCcEEEEEECCccHHHHHHc--------CCCccceEEEE-eCC
Confidence 37999999999999999999984 45554444 6899999999888776655 88999998877 789
Q ss_pred Ccccc
Q 004888 215 KPLMG 219 (725)
Q Consensus 215 ~~i~~ 219 (725)
+++..
T Consensus 96 ~~~~~ 100 (117)
T 2xc2_A 96 EKVGD 100 (117)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 88753
No 81
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=99.00 E-value=7.8e-10 Score=101.68 Aligned_cols=78 Identities=18% Similarity=0.119 Sum_probs=61.9
Q ss_pred HHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEE
Q 004888 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (725)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~v 208 (725)
+.++.+.+++||++|.|+++||++|+.|... | .++++.+ .++..++||.++.+++.+.| ++.++|+++
T Consensus 28 ~~f~~~~~~~k~vvv~F~a~wC~~C~~~~p~-l--~~l~~~~-~~v~~~~vd~d~~~~l~~~~--------~v~~~Pt~~ 95 (125)
T 1r26_A 28 EQFRNIMSEDILTVAWFTAVWCGPCKTIERP-M--EKIAYEF-PTVKFAKVDADNNSEIVSKC--------RVLQLPTFI 95 (125)
T ss_dssp HHHHHHHHSSSCEEEEEECTTCHHHHHTHHH-H--HHHHHHC-TTSEEEEEETTTCHHHHHHT--------TCCSSSEEE
T ss_pred HHHHHHHccCCEEEEEEECCcCHhHHHHHHH-H--HHHHHHC-CCCEEEEEECCCCHHHHHHc--------CCCcccEEE
Confidence 4555555889999999999999999999853 2 2344444 36999999999988776655 889999988
Q ss_pred EecCCCCcccc
Q 004888 209 FLSPDLKPLMG 219 (725)
Q Consensus 209 fl~pdG~~i~~ 219 (725)
|+ ++|+++..
T Consensus 96 i~-~~G~~~~~ 105 (125)
T 1r26_A 96 IA-RSGKMLGH 105 (125)
T ss_dssp EE-ETTEEEEE
T ss_pred EE-eCCeEEEE
Confidence 77 89998753
No 82
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=99.00 E-value=3.5e-10 Score=97.78 Aligned_cols=78 Identities=19% Similarity=0.261 Sum_probs=61.4
Q ss_pred HHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEE
Q 004888 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (725)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~v 208 (725)
+.++.+.+++||++|.|+++||++|+.|... + .++++.+.+ +..++||.++.+++.+.| ++.++|+++
T Consensus 7 ~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~-~--~~~~~~~~~-~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~ 74 (104)
T 2e0q_A 7 KNFDSFLASHEIAVVDFWAEWCAPCLILAPI-I--EELAEDYPQ-VGFGKLNSDENPDIAARY--------GVMSLPTVI 74 (104)
T ss_dssp TTHHHHHHHSSEEEEEEECTTCHHHHHHHHH-H--HHHHHHCTT-SEEEEEETTTCHHHHHHT--------TCCSSCEEE
T ss_pred HHHHHHHhcCCcEEEEEECCCChhHHHHhHH-H--HHHHHHcCC-ceEEEEECCCCHHHHHhC--------CccccCEEE
Confidence 3455555779999999999999999999753 2 345555544 899999999888776555 889999999
Q ss_pred EecCCCCcccc
Q 004888 209 FLSPDLKPLMG 219 (725)
Q Consensus 209 fl~pdG~~i~~ 219 (725)
|+ ++|+++..
T Consensus 75 ~~-~~g~~~~~ 84 (104)
T 2e0q_A 75 FF-KDGEPVDE 84 (104)
T ss_dssp EE-ETTEEEEE
T ss_pred EE-ECCeEhhh
Confidence 99 89998753
No 83
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=98.99 E-value=5.6e-10 Score=98.85 Aligned_cols=73 Identities=21% Similarity=0.248 Sum_probs=61.5
Q ss_pred hhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCC
Q 004888 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (725)
Q Consensus 135 k~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG 214 (725)
.+.+||++|.|+++||++|+.|.... .++++.+..++..++||.++.+++.+.| ++.++|+++|+ ++|
T Consensus 22 ~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~v~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~~G 89 (115)
T 1thx_A 22 LKAEQPVLVYFWASWCGPCQLMSPLI---NLAANTYSDRLKVVKLEIDPNPTTVKKY--------KVEGVPALRLV-KGE 89 (115)
T ss_dssp TTCSSCEEEEEECTTCTTHHHHHHHH---HHHHHHTTTTCEEEEEESTTCHHHHHHT--------TCCSSSEEEEE-ETT
T ss_pred hcCCceEEEEEECCCCHHHHHhHHHH---HHHHHHhCCcEEEEEEEcCCCHHHHHHc--------CCCceeEEEEE-cCC
Confidence 57899999999999999999998643 4667777667999999999888776655 88999999999 899
Q ss_pred Ccccc
Q 004888 215 KPLMG 219 (725)
Q Consensus 215 ~~i~~ 219 (725)
+++..
T Consensus 90 ~~~~~ 94 (115)
T 1thx_A 90 QILDS 94 (115)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98753
No 84
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=98.99 E-value=7.1e-10 Score=96.75 Aligned_cols=71 Identities=21% Similarity=0.271 Sum_probs=58.4
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCc
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~ 216 (725)
++||++|.|+++||++|+.|... | .++++.+..++..++||.++.+++.+.| ++.++|+++++ ++|++
T Consensus 19 ~~~~~vv~f~~~~C~~C~~~~~~-l--~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~~G~~ 86 (106)
T 1xwb_A 19 SGKLVVLDFFATWCGPCKMISPK-L--VELSTQFADNVVVLKVDVDECEDIAMEY--------NISSMPTFVFL-KNGVK 86 (106)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTTEEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-ETTEE
T ss_pred CCCEEEEEEECCcCHHHHHhhHH-H--HHHHHHhCCCeEEEEEeccchHHHHHHc--------CCCcccEEEEE-cCCcE
Confidence 79999999999999999999854 3 3566666567999999999888776655 88999998777 78987
Q ss_pred ccc
Q 004888 217 LMG 219 (725)
Q Consensus 217 i~~ 219 (725)
+..
T Consensus 87 ~~~ 89 (106)
T 1xwb_A 87 VEE 89 (106)
T ss_dssp EEE
T ss_pred EEE
Confidence 753
No 85
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A
Probab=98.97 E-value=3e-10 Score=101.95 Aligned_cols=78 Identities=14% Similarity=0.233 Sum_probs=63.3
Q ss_pred HHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEE
Q 004888 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (725)
Q Consensus 130 Al~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vf 209 (725)
-.+.+.+++||++|.|+++||++|+.|.... .++++.+..++..++||.++.+++.+.| ++.++|+++|
T Consensus 22 ~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~i~~~Pt~~~ 90 (121)
T 2i1u_A 22 FATDVLSSNKPVLVDFWATWCGPCKMVAPVL---EEIATERATDLTVAKLDVDTNPETARNF--------QVVSIPTLIL 90 (121)
T ss_dssp HHHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTCHHHHHHT--------TCCSSSEEEE
T ss_pred HHHHHHhCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEECCCCHHHHHhc--------CCCcCCEEEE
Confidence 3345567899999999999999999998643 5677777667999999999888776655 8899999998
Q ss_pred ecCCCCcccc
Q 004888 210 LSPDLKPLMG 219 (725)
Q Consensus 210 l~pdG~~i~~ 219 (725)
+ ++|+++..
T Consensus 91 ~-~~g~~~~~ 99 (121)
T 2i1u_A 91 F-KDGQPVKR 99 (121)
T ss_dssp E-ETTEEEEE
T ss_pred E-ECCEEEEE
Confidence 8 58988753
No 86
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=98.96 E-value=7.1e-10 Score=98.56 Aligned_cols=77 Identities=25% Similarity=0.330 Sum_probs=60.7
Q ss_pred HHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHh---cCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcC
Q 004888 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN---DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (725)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln---~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P 205 (725)
+.++.+.+++|+++|.|+++||++|+.|.... .++++.+. .+++.++||.++.+++.+.| ++.++|
T Consensus 15 ~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~--------~v~~~P 83 (120)
T 1mek_A 15 SNFAEALAAHKYLLVEFYAPWCGHCKALAPEY---AKAAGKLKAEGSEIRLAKVDATEESDLAQQY--------GVRGYP 83 (120)
T ss_dssp TTHHHHHHHCSEEEEEEECSSCSTTSTTHHHH---HHHHHTTTTTCCCCBCEEEETTTCCSSHHHH--------TCCSSS
T ss_pred hhHHHHHccCCeEEEEEECCCCHHHHHhhHHH---HHHHHHHhccCCcEEEEEEcCCCCHHHHHHC--------CCCccc
Confidence 44555666799999999999999999998533 23444443 35899999999988887766 889999
Q ss_pred cEEEecCCCCcc
Q 004888 206 LSVFLSPDLKPL 217 (725)
Q Consensus 206 ~~vfl~pdG~~i 217 (725)
+++|+ .+|+.+
T Consensus 84 t~~~~-~~g~~~ 94 (120)
T 1mek_A 84 TIKFF-RNGDTA 94 (120)
T ss_dssp EEEEE-ESSCSS
T ss_pred EEEEE-eCCCcC
Confidence 99999 688866
No 87
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A
Probab=98.95 E-value=9.5e-10 Score=103.55 Aligned_cols=79 Identities=22% Similarity=0.181 Sum_probs=62.0
Q ss_pred HHHHHHHh-h-cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcC
Q 004888 128 EEAFAEAR-K-RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (725)
Q Consensus 128 ~eAl~~Ak-~-e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P 205 (725)
.+.++.+- + ++|||+|+|+++||+.|+.|.... .++++.+..++..++||.++.+++.+.| ++.++|
T Consensus 11 ~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~~~~~~--------~i~~~P 79 (142)
T 1qgv_A 11 GWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVL---YSIAEKVKNFAVIYLVDITEVPDFNKMY--------ELYDPC 79 (142)
T ss_dssp HHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHH---HHHHHHHTTTEEEEEEETTTCCTTTTSS--------CSCSSC
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCeEEEEEccccCHHHHHHc--------CCCCCC
Confidence 34454432 2 699999999999999999998533 3566666567999999999999876655 889999
Q ss_pred cEEEecCCCCccc
Q 004888 206 LSVFLSPDLKPLM 218 (725)
Q Consensus 206 ~~vfl~pdG~~i~ 218 (725)
+++|+ .+|+++.
T Consensus 80 t~~~~-~~G~~v~ 91 (142)
T 1qgv_A 80 TVMFF-FRNKHIM 91 (142)
T ss_dssp EEEEE-ETTEEEE
T ss_pred EEEEE-ECCcEEE
Confidence 99998 5788774
No 88
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=98.95 E-value=1.5e-09 Score=94.33 Aligned_cols=78 Identities=19% Similarity=0.207 Sum_probs=59.9
Q ss_pred HHHHHHhh--cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCc
Q 004888 129 EAFAEARK--RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (725)
Q Consensus 129 eAl~~Ak~--e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~ 206 (725)
+.++.+.+ ++||++|.|+++||++|+.|... + .++++... ++..++||.++.+++.+.| ++.++|+
T Consensus 8 ~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~-l--~~~~~~~~-~~~~~~v~~~~~~~~~~~~--------~v~~~Pt 75 (104)
T 2vim_A 8 ADLEKLINENKGRLIVVDFFAQWCGPCRNIAPK-V--EALAKEIP-EVEFAKVDVDQNEEAAAKY--------SVTAMPT 75 (104)
T ss_dssp HHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHH-H--HHHHHHCT-TSEEEEEETTTCHHHHHHT--------TCCSSSE
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHH-H--HHHHHHCC-CCEEEEEeccCCHHHHHHc--------CCccccE
Confidence 44555544 79999999999999999999853 2 23444443 6999999999888776655 8899999
Q ss_pred EEEecCCCCcccc
Q 004888 207 SVFLSPDLKPLMG 219 (725)
Q Consensus 207 ~vfl~pdG~~i~~ 219 (725)
++++. +|+++..
T Consensus 76 ~~~~~-~g~~~~~ 87 (104)
T 2vim_A 76 FVFIK-DGKEVDR 87 (104)
T ss_dssp EEEEE-TTEEEEE
T ss_pred EEEEe-CCcEEEE
Confidence 88875 8988753
No 89
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}
Probab=98.94 E-value=5.6e-10 Score=103.55 Aligned_cols=69 Identities=16% Similarity=0.281 Sum_probs=53.6
Q ss_pred hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEe-cCC
Q 004888 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFL-SPD 213 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl-~pd 213 (725)
..+|||+|.|+++||++|+.|. |.+.++.++ +++.++||.++.+++.+.| ++.++|+++|+ +++
T Consensus 38 ~~~k~vvv~F~a~wC~~C~~~~------p~l~~l~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~~~~~ 103 (133)
T 3cxg_A 38 TQNSSIVIKFGAVWCKPCNKIK------EYFKNQLNYYYVTLVDIDVDIHPKLNDQH--------NIKALPTFEFYFNLN 103 (133)
T ss_dssp -CCSEEEEEEECTTCHHHHHTH------HHHHGGGGTEECEEEEEETTTCHHHHHHT--------TCCSSSEEEEEEEET
T ss_pred cCCCEEEEEEECCCCHHHHHHH------HHHHHHHHhcCEEEEEEeccchHHHHHhc--------CCCCCCEEEEEEecC
Confidence 3489999999999999999996 344443333 4789999999888776655 88999999999 566
Q ss_pred CC--ccc
Q 004888 214 LK--PLM 218 (725)
Q Consensus 214 G~--~i~ 218 (725)
|+ ++.
T Consensus 104 g~g~~~~ 110 (133)
T 3cxg_A 104 NEWVLVH 110 (133)
T ss_dssp TEEEEEE
T ss_pred CCeEEEE
Confidence 76 554
No 90
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.94 E-value=1.3e-09 Score=99.66 Aligned_cols=69 Identities=17% Similarity=0.267 Sum_probs=56.5
Q ss_pred hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHh--cCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCC
Q 004888 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln--~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pd 213 (725)
+++||++|.|+++||++|+.|... | .++++.+. .+++.++||.++.+.+.+.| ++.++|+++|++++
T Consensus 23 ~~~~~vlv~f~a~wC~~C~~~~p~-~--~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~~~g 91 (133)
T 2dj3_A 23 DPKKDVLIEFYAPWCGHCKQLEPI-Y--TSLGKKYKGQKDLVIAKMDATANDITNDQY--------KVEGFPTIYFAPSG 91 (133)
T ss_dssp CTTSEEEEEECCTTCSHHHHHHHH-H--HHHHHHHTTSSSEEEEEECTTTSCCCCSSC--------CCSSSSEEEEECTT
T ss_pred cCCCcEEEEEECCCChhHHHHHHH-H--HHHHHHhcCCCCEEEEEecCCcCHHHHhhc--------CCCcCCEEEEEeCC
Confidence 358999999999999999999864 3 45666665 46999999999888765444 88999999999876
Q ss_pred CC
Q 004888 214 LK 215 (725)
Q Consensus 214 G~ 215 (725)
|+
T Consensus 92 ~~ 93 (133)
T 2dj3_A 92 DK 93 (133)
T ss_dssp CT
T ss_pred Cc
Confidence 64
No 91
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=98.93 E-value=8.6e-10 Score=98.41 Aligned_cols=78 Identities=23% Similarity=0.206 Sum_probs=60.1
Q ss_pred HHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc--CcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEe
Q 004888 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (725)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~--~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl 210 (725)
.+..++||++|.|+++||++|+.|.. .+.++..+ ++..++||.++.+++.+.| ++.++|+++|+
T Consensus 14 ~~~~~~~~~vv~f~a~wC~~C~~~~~------~l~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~ 79 (110)
T 2l6c_A 14 AHFEGLSDAIVFFHKNLCPHCKNMEK------VLDKFGARAPQVAISSVDSEARPELMKEL--------GFERVPTLVFI 79 (110)
T ss_dssp HHHTTCSEEEEEEECSSCSTHHHHHH------HHHHHHTTCTTSCEEEEEGGGCHHHHHHT--------TCCSSCEEEEE
T ss_pred HHHHcCCCEEEEEECCCCHhHHHHHH------HHHHHHHHCCCcEEEEEcCcCCHHHHHHc--------CCcccCEEEEE
Confidence 45567899999999999999999974 34443332 5788899998888776655 88999999999
Q ss_pred cCCCCcccc-ccccCC
Q 004888 211 SPDLKPLMG-GTYFPP 225 (725)
Q Consensus 211 ~pdG~~i~~-~tY~p~ 225 (725)
.+|+++.. .++.++
T Consensus 80 -~~G~~v~~~~G~~~~ 94 (110)
T 2l6c_A 80 -RDGKVAKVFSGIMNP 94 (110)
T ss_dssp -ESSSEEEEEESCCCH
T ss_pred -ECCEEEEEEcCCCCH
Confidence 89998864 244543
No 92
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=98.93 E-value=2.2e-09 Score=106.97 Aligned_cols=80 Identities=14% Similarity=0.163 Sum_probs=66.9
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcE
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~ 207 (725)
.+.++.+...+||++|.|+++||++|+.|.... .++++.++.+++.++||.++.+++.+.| ++.|+|++
T Consensus 104 ~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~---~~l~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~ 172 (210)
T 3apq_A 104 RREFDAAVNSGELWFVNFYSPGCSHCHDLAPTW---REFAKEVDGLLRIGAVNCGDDRMLCRMK--------GVNSYPSL 172 (210)
T ss_dssp HHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHH---HHHHHHTBTTBEEEEEETTTCHHHHHHT--------TCCSSSEE
T ss_pred HHHHHHHHccCCcEEEEEeCCCChhHHHHHHHH---HHHHHHhcCceEEEEEECCccHHHHHHc--------CCCcCCeE
Confidence 567777778899999999999999999998643 4677777667999999999888776655 89999999
Q ss_pred EEecCCCCcccc
Q 004888 208 VFLSPDLKPLMG 219 (725)
Q Consensus 208 vfl~pdG~~i~~ 219 (725)
+|+ ++|+++..
T Consensus 173 ~~~-~~G~~~~~ 183 (210)
T 3apq_A 173 FIF-RSGMAAVK 183 (210)
T ss_dssp EEE-CTTSCCEE
T ss_pred EEE-ECCCceeE
Confidence 999 99997643
No 93
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.91 E-value=1.5e-09 Score=112.70 Aligned_cols=72 Identities=17% Similarity=0.276 Sum_probs=60.5
Q ss_pred hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCC
Q 004888 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~ 215 (725)
..+|||+|+|+++||++|+.|.... .++++.+..+++.++||.++.+++.+.| ++.|+||++|+ .+|+
T Consensus 24 ~~~~~v~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~G~ 91 (287)
T 3qou_A 24 SMTTPVLFYFWSERSQHCLQLTPIL---ESLAAQYNGQFILAKLDCDAEQMIAAQF--------GLRAIPTVYLF-QNGQ 91 (287)
T ss_dssp TTTSCEEEEEECTTCTTTTTTHHHH---HHHHHHHTSSSEEEEEETTTCHHHHHTT--------TCCSSSEEEEE-ETTE
T ss_pred cCCCeEEEEEECCCChHHHHHHHHH---HHHHHHcCCCeEEEEEeCccCHHHHHHc--------CCCCCCeEEEE-ECCE
Confidence 4599999999999999999997533 4666677667999999999998876665 89999999999 7899
Q ss_pred cccc
Q 004888 216 PLMG 219 (725)
Q Consensus 216 ~i~~ 219 (725)
++..
T Consensus 92 ~~~~ 95 (287)
T 3qou_A 92 PVDG 95 (287)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8753
No 94
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0
Probab=98.90 E-value=3e-09 Score=97.09 Aligned_cols=70 Identities=16% Similarity=0.165 Sum_probs=55.2
Q ss_pred hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHH-----hcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEe
Q 004888 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLL-----NDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~l-----n~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl 210 (725)
+.+|+++|.|+++||+.|+.|.. .|. ++++.+ +.+++.++||.++.+++.+.| ++.|+|+++|+
T Consensus 31 ~~~~~vlv~F~a~wC~~C~~~~p-~~~--~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~ 99 (127)
T 3h79_A 31 DPEKDVFVLYYVPWSRHSVAAMR-LWD--DLSMSQSQKRNHLTFVAARIDGEKYPDVIERM--------RVSGFPTMRYY 99 (127)
T ss_dssp CTTCEEEEEEECTTCHHHHHHHH-HHH--HHHHHHHTSTTTTTEEEEEEETTTCHHHHHHT--------TCCSSSEEEEE
T ss_pred CCCCCEEEEEECCccHHHHHHhH-HHH--HHHHHHHhcccCCCeEEEEEEccccHhHHHhc--------CCccCCEEEEE
Confidence 56999999999999999999984 222 333322 246999999999988877665 89999999999
Q ss_pred cCCCCc
Q 004888 211 SPDLKP 216 (725)
Q Consensus 211 ~pdG~~ 216 (725)
.+.++.
T Consensus 100 ~~g~~~ 105 (127)
T 3h79_A 100 TRIDKQ 105 (127)
T ss_dssp CSSCSS
T ss_pred eCCCCC
Confidence 876653
No 95
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=98.90 E-value=3e-09 Score=94.29 Aligned_cols=70 Identities=19% Similarity=0.143 Sum_probs=54.3
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCC-CCcchHHHHHHHHHHhcCCCCcCcEEEecCCCC
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE-ERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~e-e~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~ 215 (725)
.+||++|.|+++||++|+.|... + .++++.+. ++..++||.+ +.+++.+.| ++.|+|++ ++.++|+
T Consensus 23 ~~~~vlv~f~a~wC~~C~~~~~~-l--~~~~~~~~-~v~~~~vd~~~~~~~~~~~~--------~v~~~Pt~-~~~~~G~ 89 (111)
T 2pu9_C 23 GDKPVVLDMFTQWCGPSKAMAPK-Y--EKLAEEYL-DVIFLKLDCNQENKTLAKEL--------GIRVVPTF-KILKENS 89 (111)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHH-H--HHHHHHCT-TSEEEEEECSSTTHHHHHHH--------CCSBSSEE-EEESSSS
T ss_pred CCCEEEEEEECCcCHhHHHHCHH-H--HHHHHHCC-CeEEEEEecCcchHHHHHHc--------CCCeeeEE-EEEeCCc
Confidence 68999999999999999999853 2 34444443 5899999998 667766655 88999995 4569999
Q ss_pred cccc
Q 004888 216 PLMG 219 (725)
Q Consensus 216 ~i~~ 219 (725)
++..
T Consensus 90 ~~~~ 93 (111)
T 2pu9_C 90 VVGE 93 (111)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8753
No 96
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=98.88 E-value=3.2e-09 Score=93.31 Aligned_cols=67 Identities=15% Similarity=0.214 Sum_probs=55.1
Q ss_pred CCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc------CcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEec
Q 004888 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND------WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 211 (725)
Q Consensus 138 ~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~------~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~ 211 (725)
+|+++|.|+++||++|+.|. |.+.++..+ ++..++||.++.+++.+.| ++.++|+++|+
T Consensus 21 ~~~~lv~f~~~~C~~C~~~~------~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~- 85 (111)
T 3uvt_A 21 EGITFIKFYAPWCGHCKTLA------PTWEELSKKEFPGLAGVKIAEVDCTAERNICSKY--------SVRGYPTLLLF- 85 (111)
T ss_dssp SSEEEEEEECSSCHHHHHHH------HHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-
T ss_pred CCcEEEEEECCCChhHHHhh------HHHHHHHHHhhccCCceEEEEEeccccHhHHHhc--------CCCcccEEEEE-
Confidence 89999999999999999998 455555543 5888999999888876655 88999999888
Q ss_pred CCCCcccc
Q 004888 212 PDLKPLMG 219 (725)
Q Consensus 212 pdG~~i~~ 219 (725)
.+|+.+..
T Consensus 86 ~~g~~~~~ 93 (111)
T 3uvt_A 86 RGGKKVSE 93 (111)
T ss_dssp ETTEEEEE
T ss_pred eCCcEEEe
Confidence 78887643
No 97
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=3.5e-09 Score=97.99 Aligned_cols=81 Identities=16% Similarity=0.085 Sum_probs=62.4
Q ss_pred HhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCcchHHHHHHHHHHhcCCC------CcCc
Q 004888 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGG------GWPL 206 (725)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~------G~P~ 206 (725)
++.++||++|.|+++||+.|+.|... | .++++.+.. ++..++||.++.+++.+.| ++. ++|+
T Consensus 22 ~~~~~~~vlv~f~a~wC~~C~~~~p~-~--~~l~~~~~~~~v~~~~vd~~~~~~~~~~~--------~v~~~~~~~~~Pt 90 (137)
T 2dj0_A 22 ERDKRVTWIVEFFANWSNDCQSFAPI-Y--ADLSLKYNCTGLNFGKVDVGRYTDVSTRY--------KVSTSPLTKQLPT 90 (137)
T ss_dssp HHSTTSCEEEEECCTTCSTTTTTHHH-H--HHHHHHHCSSSCEEEECCTTTCHHHHHHT--------TCCCCSSSSCSSE
T ss_pred hcCCCCEEEEEEECCCCHHHHHHHHH-H--HHHHHHhCCCCeEEEEEeCccCHHHHHHc--------cCcccCCcCCCCE
Confidence 44556799999999999999999853 3 356666653 7999999999988876655 776 9999
Q ss_pred EEEecCCCCcccc-ccccCCC
Q 004888 207 SVFLSPDLKPLMG-GTYFPPE 226 (725)
Q Consensus 207 ~vfl~pdG~~i~~-~tY~p~~ 226 (725)
++|+ .+|+++.. .++.+.+
T Consensus 91 ~~~~-~~G~~~~~~~G~~~~~ 110 (137)
T 2dj0_A 91 LILF-QGGKEAMRRPQIDKKG 110 (137)
T ss_dssp EEEE-SSSSEEEEESCBCSSS
T ss_pred EEEE-ECCEEEEEecCcCchH
Confidence 9999 78998753 3445543
No 98
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.87 E-value=1.9e-09 Score=108.66 Aligned_cols=80 Identities=16% Similarity=0.272 Sum_probs=64.9
Q ss_pred HHHHHH-HhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCc
Q 004888 128 EEAFAE-ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (725)
Q Consensus 128 ~eAl~~-Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~ 206 (725)
++.|.. ..+++|||+|.|+++||++|+.|.... .++++.+..++..++||.++.+++.+.| ++.++|+
T Consensus 19 ~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~l~~~~--------~v~~~Pt 87 (222)
T 3dxb_A 19 DDSFDTDVLKADGAILVDFWAEWCGPCKMIAPIL---DEIADEYQGKLTVAKLNIDQNPGTAPKY--------GIRGIPT 87 (222)
T ss_dssp TTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTCTTTGGGG--------TCCSBSE
T ss_pred HHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHH---HHHHHHhcCCcEEEEEECCCCHHHHHHc--------CCCcCCE
Confidence 444544 367899999999999999999998643 5677777767999999999998887665 8999999
Q ss_pred EEEecCCCCcccc
Q 004888 207 SVFLSPDLKPLMG 219 (725)
Q Consensus 207 ~vfl~pdG~~i~~ 219 (725)
++|+. +|+++..
T Consensus 88 ~~~~~-~G~~~~~ 99 (222)
T 3dxb_A 88 LLLFK-NGEVAAT 99 (222)
T ss_dssp EEEEE-TTEEEEE
T ss_pred EEEEE-CCeEEEE
Confidence 99985 8887753
No 99
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=98.84 E-value=8e-10 Score=99.45 Aligned_cols=85 Identities=19% Similarity=0.217 Sum_probs=56.0
Q ss_pred hHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCc
Q 004888 127 GEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (725)
Q Consensus 127 ~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~ 206 (725)
..+.++.+.+++||++|.|+++||++|+.|.... .++++..+..++. +|.++..+.+. .....+ .+++.|+|+
T Consensus 18 ~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~l---~~~~~~~~~~v~~--~~~~~~~~~~~-~~~~~~-~~~i~~~Pt 90 (118)
T 1zma_A 18 TVVRAQEALDKKETATFFIGRKTCPYCRKFAGTL---SGVVAETKAHIYF--INSEEPSQLND-LQAFRS-RYGIPTVPG 90 (118)
T ss_dssp CHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHH---HHHHHHHCCCCEE--EETTCGGGHHH-HHHHHH-HHTCCSSCE
T ss_pred CHHHHHHHHhCCCeEEEEEECCCCccHHHHHHHH---HHHHHhcCCeEEE--EECCCcCcHHH-HHHHHH-HcCCCCCCe
Confidence 4667777788899999999999999999998422 1333333333444 45554443332 222222 248999999
Q ss_pred EEEecCCCCcccc
Q 004888 207 SVFLSPDLKPLMG 219 (725)
Q Consensus 207 ~vfl~pdG~~i~~ 219 (725)
++|+ .+|+++..
T Consensus 91 ~~~~-~~G~~~~~ 102 (118)
T 1zma_A 91 FVHI-TDGQINVR 102 (118)
T ss_dssp EEEE-ETTEEEEE
T ss_pred EEEE-ECCEEEEE
Confidence 9998 48887643
No 100
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Probab=98.34 E-value=3.3e-10 Score=98.27 Aligned_cols=75 Identities=21% Similarity=0.315 Sum_probs=60.7
Q ss_pred HHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecC
Q 004888 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP 212 (725)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~p 212 (725)
.+.+.+||++|.|+++||++|+.|... + .++++.+..++..++||.++.+++.+.| ++.++|+++++ +
T Consensus 14 ~~~~~~~~~~v~f~~~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~ 81 (106)
T 2yj7_A 14 EVLKSDKPVLVDFWAPWCGPCRMIAPI-I--EELAKEYEGKVKVVKVNVDENPNTAAQY--------GIRSIPTLLLF-K 81 (106)
Confidence 446789999999999999999999753 3 4566666657888999998888776655 77899999999 8
Q ss_pred CCCcccc
Q 004888 213 DLKPLMG 219 (725)
Q Consensus 213 dG~~i~~ 219 (725)
+|+++..
T Consensus 82 ~g~~~~~ 88 (106)
T 2yj7_A 82 NGQVVDR 88 (106)
Confidence 9988754
No 101
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=98.83 E-value=2.1e-09 Score=101.51 Aligned_cols=96 Identities=10% Similarity=0.001 Sum_probs=68.0
Q ss_pred CCCCccccchHHHHHHH-hhcCCcEEEEEeccCC--hhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHH
Q 004888 118 HNPVDWFAWGEEAFAEA-RKRDVPIFLSIGYSTC--HWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTY 194 (725)
Q Consensus 118 ~~~V~W~~~~~eAl~~A-k~e~KpI~l~~g~~wC--~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~ 194 (725)
.+.-.|..-.++-|+.- .+.++||+|+|+++|| +.|+.|.- ++ +++++.+...+..+|||++++|++...|
T Consensus 12 ~~~~g~~~vt~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaP-vl--eela~e~~~~v~~~KVdvDe~~~la~~y--- 85 (137)
T 2qsi_A 12 ARPNAPTLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAV-VL--PELINAFPGRLVAAEVAAEAERGLMARF--- 85 (137)
T ss_dssp -----CEEECTTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHH-HH--HHHHHTSTTTEEEEEECGGGHHHHHHHH---
T ss_pred HHhcCCcccCHhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHh-HH--HHHHHHccCCcEEEEEECCCCHHHHHHc---
Confidence 33344444334444433 3444599999999999 99999984 22 3555555456899999999999998888
Q ss_pred HHHhcCCCCcCcEEEecCCCCcccc-ccccCC
Q 004888 195 VQALYGGGGWPLSVFLSPDLKPLMG-GTYFPP 225 (725)
Q Consensus 195 ~q~~~g~~G~P~~vfl~pdG~~i~~-~tY~p~ 225 (725)
|+.++||.+|+ .+|+++.. .+..|.
T Consensus 86 -----gV~siPTlilF-kdG~~v~~~vG~~~k 111 (137)
T 2qsi_A 86 -----GVAVCPSLAVV-QPERTLGVIAKIQDW 111 (137)
T ss_dssp -----TCCSSSEEEEE-ECCEEEEEEESCCCH
T ss_pred -----CCccCCEEEEE-ECCEEEEEEeCCCCH
Confidence 99999999999 78999865 345553
No 102
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=98.83 E-value=6.5e-09 Score=93.97 Aligned_cols=71 Identities=21% Similarity=0.188 Sum_probs=54.5
Q ss_pred hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCC-CCcchHHHHHHHHHHhcCCCCcCcEEEecCCC
Q 004888 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE-ERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~e-e~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG 214 (725)
.++||++|.|+++||++|+.|.... .++++... ++..++||.+ +.+++.+.| ++.|+|+++|+ ++|
T Consensus 35 ~~~~~~vv~f~a~wC~~C~~~~~~l---~~~~~~~~-~~~~~~vd~~~~~~~~~~~~--------~v~~~Pt~~~~-~~G 101 (124)
T 1faa_A 35 AGDKPVVLDMFTQWCGPCKAMAPKY---EKLAEEYL-DVIFLKLDCNQENKTLAKEL--------GIRVVPTFKIL-KEN 101 (124)
T ss_dssp TTTSCEEEEEECTTCHHHHHHHHHH---HHHHHHCT-TSEEEEEECSSTTHHHHHHH--------CCSSSSEEEEE-ETT
T ss_pred cCCCEEEEEEECCcCHhHHHHhHHH---HHHHHHCC-CCEEEEEecCcchHHHHHHc--------CCCeeeEEEEE-eCC
Confidence 4799999999999999999998532 34444433 5899999997 567666655 89999996655 899
Q ss_pred Ccccc
Q 004888 215 KPLMG 219 (725)
Q Consensus 215 ~~i~~ 219 (725)
+++..
T Consensus 102 ~~~~~ 106 (124)
T 1faa_A 102 SVVGE 106 (124)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 98753
No 103
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=98.82 E-value=4.5e-09 Score=96.83 Aligned_cols=99 Identities=10% Similarity=0.039 Sum_probs=67.3
Q ss_pred hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCcchHHHHHHH-----------------HHH
Q 004888 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTY-----------------VQA 197 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~pd~~~~y~~~-----------------~q~ 197 (725)
-.||+|+|.|+++||+.|+.+....- ++.+.+.+ ++..|.|+.++.++..+.|.+. +..
T Consensus 29 ~~gk~vll~f~~~~C~~C~~~~~~l~---~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 105 (148)
T 3hcz_A 29 VQAKYTILFFWDSQCGHCQQETPKLY---DWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKI 105 (148)
T ss_dssp CCCSEEEEEEECGGGCTTCSHHHHHH---HHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHH
T ss_pred cCCCEEEEEEECCCCccHHHHHHHHH---HHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHH
Confidence 46899999999999999999874221 24444443 4888888888666533333321 222
Q ss_pred hcCCCCcCcEEEecCCCCccccccccCCCCCCCcchHHHHHHHHHHHH
Q 004888 198 LYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAW 245 (725)
Q Consensus 198 ~~g~~G~P~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i~~~~ 245 (725)
.+++.++|+++++|++|+++.... |...+.++++.+.+.-
T Consensus 106 ~~~i~~~P~~~lid~~G~i~~~~~--------g~~~~~~~l~~l~~~l 145 (148)
T 3hcz_A 106 TYDIYATPVLYVLDKNKVIIAKRI--------GYENLDDFLVQYEKSL 145 (148)
T ss_dssp HHCCCSSCEEEEECTTCBEEEESC--------CGGGHHHHHHHHHHHH
T ss_pred hcCcCCCCEEEEECCCCcEEEecC--------CHHHHHHHHHHHHHHh
Confidence 358899999999999999986521 1235667777666543
No 104
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=98.80 E-value=3.1e-09 Score=100.73 Aligned_cols=102 Identities=9% Similarity=0.073 Sum_probs=73.7
Q ss_pred CChhhhcccCCCCccccchHHHHHHHhhcCCcEEEEEeccC--ChhhHhhhhhccCCHHHHHHHhcC-cEEEEEcCCCCc
Q 004888 109 HSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYST--CHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERP 185 (725)
Q Consensus 109 ~spyl~~ha~~~V~W~~~~~eAl~~Ak~e~KpI~l~~g~~w--C~~C~~Me~e~f~d~eVa~~ln~~-FV~VkvD~ee~p 185 (725)
.||-+++-... .|..-.++-|+.--+.++||+|+|+++| |+.|+.|.- ++ +++++.+... +..+|||++++|
T Consensus 7 ~~pl~~rl~~~--g~~~~t~~~F~~~v~~~~~vlVdF~a~~crCgpCk~iaP-vl--eela~e~~g~~v~~~KVdvDe~~ 81 (140)
T 2qgv_A 7 FDALWQRMLAR--GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPV-MI--GELLHEFPDYTWQVAIADLEQSE 81 (140)
T ss_dssp HHHHHHHHHHT--TCEECCHHHHHHHHHTCSSEEEEECCCTTTCTTTTHHHH-HH--HHHHTTCTTSCCEEEECCHHHHH
T ss_pred CChHHHHHHhc--CCccCCHHHHHHHHhCCCCEEEEEeCCcccCCcHHHHHh-HH--HHHHHHcCCCeEEEEEEECCCCH
Confidence 34554443333 4444446666665568899999999999 999999983 22 2344444345 899999999999
Q ss_pred chHHHHHHHHHHhcCCCCcCcEEEecCCCCcccc-ccccC
Q 004888 186 DVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG-GTYFP 224 (725)
Q Consensus 186 d~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~~-~tY~p 224 (725)
++...| |+.++||.+|+ .+|+++.. .+..|
T Consensus 82 ~lA~~y--------gV~sIPTlilF-k~G~~v~~~~G~~~ 112 (140)
T 2qgv_A 82 AIGDRF--------GAFRFPATLVF-TGGNYRGVLNGIHP 112 (140)
T ss_dssp HHHHHH--------TCCSSSEEEEE-ETTEEEEEEESCCC
T ss_pred HHHHHc--------CCccCCEEEEE-ECCEEEEEEecCCC
Confidence 998888 99999999988 78998865 34444
No 105
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Probab=98.80 E-value=4.4e-09 Score=102.34 Aligned_cols=93 Identities=12% Similarity=0.010 Sum_probs=64.7
Q ss_pred hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHh--cCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCC
Q 004888 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln--~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pd 213 (725)
..+|+++|+|+++||+.|+.+. |.+.++.. .++..++||+++.+++...|. ..++.++|+++|++.+
T Consensus 52 ~~~k~vvv~F~A~WC~pC~~~~------P~l~~l~~~~~~v~~~~v~~d~~~~~~~~~~-----~~~v~~iPt~i~~~~~ 120 (167)
T 1z6n_A 52 IERRYRLLVAGEMWCPDCQINL------AALDFAQRLQPNIELAIISKGRAEDDLRQRL-----ALERIAIPLVLVLDEE 120 (167)
T ss_dssp CCSCEEEEEECCTTCHHHHHHH------HHHHHHHHHCTTEEEEEECHHHHHHHTTTTT-----TCSSCCSSEEEEECTT
T ss_pred hCCCEEEEEEECCCChhHHHHH------HHHHHHHHHCCCcEEEEEECCCCHHHHHHHH-----HcCCCCcCeEEEECCC
Confidence 3689999999999999999987 44444332 367888999887776654441 1247899999999999
Q ss_pred CCccccccccCCCCCCCcchHHHHHHHHHHHHh
Q 004888 214 LKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWD 246 (725)
Q Consensus 214 G~~i~~~tY~p~~~~~~~~~F~~~L~~i~~~~~ 246 (725)
|+++...+..|. ...+.+......|.
T Consensus 121 G~~~~~~g~~p~-------~~~~~i~~~~~~~~ 146 (167)
T 1z6n_A 121 FNLLGRFVERPQ-------AVLDGGPQALAAYK 146 (167)
T ss_dssp CCEEEEEESSCH-------HHHHHCHHHHHHHH
T ss_pred CCEEEEEcCCCH-------HHHHhHHHHHHHHH
Confidence 998654333342 34455555555554
No 106
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Probab=98.78 E-value=1.1e-08 Score=91.85 Aligned_cols=68 Identities=18% Similarity=0.277 Sum_probs=55.5
Q ss_pred hhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-----CcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEE
Q 004888 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-----WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (725)
Q Consensus 135 k~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-----~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vf 209 (725)
..++|+++|.|+++||++|+.|... | .++++.+.. ++..++||.++.+ +. + ++.++|+++|
T Consensus 22 ~~~~~~vlv~f~a~wC~~C~~~~p~-~--~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~-------~---~v~~~Pt~~~ 87 (121)
T 2djj_A 22 LDDTKDVLIEFYAPWCGHCKALAPK-Y--EELGALYAKSEFKDRVVIAKVDATAND-VP-------D---EIQGFPTIKL 87 (121)
T ss_dssp SCTTSCEEEEEECSSCTTHHHHHHH-H--HHHHHHHTTSSCTTSSEEEEEETTTSC-CS-------S---CCSSSSEEEE
T ss_pred hcCCCCEEEEEECCCCHhHHHhhHH-H--HHHHHHHhhcccCCceEEEEEECcccc-cc-------c---ccCcCCeEEE
Confidence 3578999999999999999999864 4 467777765 7999999998766 21 1 6789999999
Q ss_pred ecCCCCc
Q 004888 210 LSPDLKP 216 (725)
Q Consensus 210 l~pdG~~ 216 (725)
++++|+.
T Consensus 88 ~~~~~~~ 94 (121)
T 2djj_A 88 YPAGAKG 94 (121)
T ss_dssp ECSSCTT
T ss_pred EeCcCCC
Confidence 9998873
No 107
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=98.78 E-value=6.7e-09 Score=96.31 Aligned_cols=80 Identities=20% Similarity=0.264 Sum_probs=57.5
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcE
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~ 207 (725)
.+.+..+..+++.++|.|+++||++|+.|.... .++++.+..++..++||.++.+++.+.| ++.++|++
T Consensus 40 ~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l---~~l~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~ 108 (140)
T 1v98_A 40 EKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPIL---EELARDHAGRLKVVKVNVDEHPGLAARY--------GVRSVPTL 108 (140)
T ss_dssp ---------CCCEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTEEEEEEETTTCHHHHHHT--------TCCSSSEE
T ss_pred HHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHH---HHHHHHccCceEEEEEECCCCHHHHHHC--------CCCccCEE
Confidence 445555533444499999999999999998643 4666666667999999999888776655 88999999
Q ss_pred EEecCCCCcccc
Q 004888 208 VFLSPDLKPLMG 219 (725)
Q Consensus 208 vfl~pdG~~i~~ 219 (725)
+|+ .+|+++..
T Consensus 109 ~~~-~~G~~~~~ 119 (140)
T 1v98_A 109 VLF-RRGAPVAT 119 (140)
T ss_dssp EEE-ETTEEEEE
T ss_pred EEE-eCCcEEEE
Confidence 998 79998753
No 108
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.77 E-value=8.2e-09 Score=93.71 Aligned_cols=66 Identities=20% Similarity=0.135 Sum_probs=53.7
Q ss_pred CcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCc
Q 004888 139 VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (725)
Q Consensus 139 KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~ 216 (725)
++++|.|+++||++|+.|.... .++++.+.. ++..++||.++.+++.+.| ++.++|+++|+ ++|++
T Consensus 23 ~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~v~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~G~~ 89 (126)
T 1x5e_A 23 GDWMIEFYAPWCPACQNLQPEW---ESFAEWGEDLEVNIAKVDVTEQPGLSGRF--------IINALPTIYHC-KDGEF 89 (126)
T ss_dssp SEEEEEEECSSCHHHHHHHHHH---HHHHHHHGGGTCEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-ETTEE
T ss_pred CCEEEEEECCCCHHHHHHhHHH---HHHHHHhccCCeEEEEEECcCCHHHHHHc--------CCcccCEEEEE-eCCeE
Confidence 3499999999999999998543 345555554 7999999999888776655 88999999999 88985
No 109
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Probab=98.76 E-value=9.4e-09 Score=97.73 Aligned_cols=96 Identities=9% Similarity=0.137 Sum_probs=63.6
Q ss_pred hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHH---------------HHHhcC
Q 004888 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTY---------------VQALYG 200 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~---------------~q~~~g 200 (725)
..|||++|+|+++||++|+.+. |.+.++.++++..|.|+.++.++..+.|.+. +...++
T Consensus 49 ~~gk~vll~F~a~~C~~C~~~~------~~l~~l~~~~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 122 (168)
T 2b1k_A 49 TQGKPVLLNVWATWCPTCRAEH------QYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLG 122 (168)
T ss_dssp CCSSCEEEEEECTTCHHHHHHH------HHHHHHHHTTCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHT
T ss_pred cCCCEEEEEEECCCCHHHHHHH------HHHHHHHHCCCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcC
Confidence 4689999999999999999987 5666666666777777755443322222110 111248
Q ss_pred CCCcCcEEEecCCCCccccc-cccCCCCCCCcchHHHHHHHHHH
Q 004888 201 GGGWPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKVKD 243 (725)
Q Consensus 201 ~~G~P~~vfl~pdG~~i~~~-tY~p~~~~~~~~~F~~~L~~i~~ 243 (725)
+.++|++++++++|+++... ++.++ ..+.+.|+++.+
T Consensus 123 v~~~P~~~lid~~G~i~~~~~g~~~~------~~l~~~l~~~l~ 160 (168)
T 2b1k_A 123 VYGAPETFLIDGNGIIRYRHAGDLNP------RVWEEEIKPLWE 160 (168)
T ss_dssp CCSSSEEEEECTTSBEEEEEESCCCH------HHHHHTTHHHHH
T ss_pred ccccCEEEEECCCCeEEEEEeCCCCH------HHHHHHHHHHHH
Confidence 88999999999999988642 33333 245555555543
No 110
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=98.75 E-value=1.4e-08 Score=92.12 Aligned_cols=80 Identities=16% Similarity=0.133 Sum_probs=55.3
Q ss_pred HhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHH--------------HHHhc
Q 004888 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTY--------------VQALY 199 (725)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~--------------~q~~~ 199 (725)
+...|||++|.|+++||+.|+.+.... + ++.+.+. ++..|.|+.++.++..+.|.+. +...+
T Consensus 20 ~~~~~k~~lv~f~~~~C~~C~~~~~~l-~--~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 95 (136)
T 1lu4_A 20 ASLQGKPAVLWFWTPWCPFCNAEAPSL-S--QVAAANP-AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARY 95 (136)
T ss_dssp GGGTTSCEEEEEECTTCHHHHHHHHHH-H--HHHHHCT-TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHT
T ss_pred HHhCCCEEEEEEECCcChhHHHHHHHH-H--HHHHHCC-CcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhc
Confidence 344689999999999999999987422 1 3444443 6888888877643332222211 11224
Q ss_pred CCCCcCcEEEecCCCCcc
Q 004888 200 GGGGWPLSVFLSPDLKPL 217 (725)
Q Consensus 200 g~~G~P~~vfl~pdG~~i 217 (725)
++.++|++++++++|+++
T Consensus 96 ~i~~~P~~~lid~~G~i~ 113 (136)
T 1lu4_A 96 NVPWQPAFVFYRADGTST 113 (136)
T ss_dssp TCCSSSEEEEECTTSCEE
T ss_pred CCCCCCEEEEECCCCcEE
Confidence 889999999999999987
No 111
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=98.75 E-value=7.3e-09 Score=95.97 Aligned_cols=87 Identities=15% Similarity=0.069 Sum_probs=58.0
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCcchH--HHHHHHHHHhcCCCCc
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVD--KVYMTYVQALYGGGGW 204 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~pd~~--~~y~~~~q~~~g~~G~ 204 (725)
.+.++...++ ||+|+|+++||++|+.|. |.+.++.++ .+..++||.++.++.. .......+ .+++.|+
T Consensus 23 ~~~~~~~~~~--~vlv~F~a~wC~~C~~~~------p~l~~l~~~~~v~~~~vd~~~~~~~~~~d~~~~l~~-~~~v~~~ 93 (135)
T 3emx_A 23 PEEFRQLLQG--DAILAVYSKTCPHCHRDW------PQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMN-KAGVEGT 93 (135)
T ss_dssp HHHHHHHHTS--SEEEEEEETTCHHHHHHH------HHHHHHHTTCCSCEEEEEECTTCCHHHHHHHHHHHH-HHTCCSS
T ss_pred HHHHHHHhCC--cEEEEEECCcCHhhhHhC------hhHHHHHHHCCCEEEEEECCCchhhhhhhhhHHHHH-HcCCcee
Confidence 4556655554 999999999999999997 566665554 2777888885433211 11112222 2489999
Q ss_pred CcEEEecCCCCcccc-ccccC
Q 004888 205 PLSVFLSPDLKPLMG-GTYFP 224 (725)
Q Consensus 205 P~~vfl~pdG~~i~~-~tY~p 224 (725)
|+++|+. +|+++.. .++.+
T Consensus 94 Pt~~~~~-~G~~v~~~~G~~~ 113 (135)
T 3emx_A 94 PTLVFYK-EGRIVDKLVGATP 113 (135)
T ss_dssp SEEEEEE-TTEEEEEEESCCC
T ss_pred CeEEEEc-CCEEEEEEeCCCC
Confidence 9888887 9998864 34444
No 112
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=98.75 E-value=6.5e-09 Score=95.75 Aligned_cols=84 Identities=13% Similarity=0.151 Sum_probs=63.8
Q ss_pred hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCcchHHHHHHH--------------HH--Hh
Q 004888 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTY--------------VQ--AL 198 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~pd~~~~y~~~--------------~q--~~ 198 (725)
-.||+|+|+|+++||+.|+.+....-+.+++.+.+.+ ++..|.|+.++.++..+.|.+. .. ..
T Consensus 25 ~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 104 (142)
T 3ewl_A 25 LKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQL 104 (142)
T ss_dssp CCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTC
T ss_pred cCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHH
Confidence 3689999999999999999987766667778877754 5888888887665543333211 01 14
Q ss_pred cCCCCcCcEEEecCCCCcccc
Q 004888 199 YGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 199 ~g~~G~P~~vfl~pdG~~i~~ 219 (725)
+++.++|+++++|++|+++.+
T Consensus 105 ~~v~~~P~~~lid~~G~i~~~ 125 (142)
T 3ewl_A 105 YDIRATPTIYLLDGRKRVILK 125 (142)
T ss_dssp SCCCSSSEEEEECTTCBEEEC
T ss_pred cCCCCCCeEEEECCCCCEEec
Confidence 688999999999999999874
No 113
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=98.73 E-value=2.2e-08 Score=92.04 Aligned_cols=85 Identities=11% Similarity=0.051 Sum_probs=55.6
Q ss_pred HHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCc-----chHHHHHH-------------
Q 004888 132 AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERP-----DVDKVYMT------------- 193 (725)
Q Consensus 132 ~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~p-----d~~~~y~~------------- 193 (725)
..+...||+++|.|+++||+.|+.+.... .++.+.+.+.+..|.|+.+..+ +..+.|.+
T Consensus 23 ~~~~~~gk~~lv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 99 (148)
T 2b5x_A 23 REQLIGEKPTLIHFWSISCHLCKEAMPQV---NEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSD 99 (148)
T ss_dssp HHHHTTTSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSS
T ss_pred chhhcCCCEEEEEEEcCCCHHHHHHhHHH---HHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCc
Confidence 34445789999999999999999987432 2455555544777777765311 11011100
Q ss_pred -HHHHhcCCCCcCcEEEecCCCCcccc
Q 004888 194 -YVQALYGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 194 -~~q~~~g~~G~P~~vfl~pdG~~i~~ 219 (725)
.+...+++.++|+++|+|++|+++..
T Consensus 100 ~~~~~~~~v~~~P~~~lid~~G~i~~~ 126 (148)
T 2b5x_A 100 HALTDAFENEYVPAYYVFDKTGQLRHF 126 (148)
T ss_dssp CHHHHHTCCCCSSEEEEECTTCBEEEE
T ss_pred hhHHHHhCCCCCCEEEEECCCCcEEEE
Confidence 01112488999999999999998864
No 114
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=98.73 E-value=2.1e-08 Score=93.68 Aligned_cols=79 Identities=11% Similarity=0.159 Sum_probs=55.1
Q ss_pred HhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHH----hcCcEEEEEcCCCCcchHHHHHH----------------
Q 004888 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLL----NDWFVSIKVDREERPDVDKVYMT---------------- 193 (725)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~l----n~~FV~VkvD~ee~pd~~~~y~~---------------- 193 (725)
+.-.||||+|+|+++||+.|+.+.. .+.++. ++++..|.|+.+..+++. .|.+
T Consensus 20 ~~~~gk~vlv~F~a~wC~~C~~~~~------~l~~l~~~~~~~~v~vv~v~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~ 92 (151)
T 3raz_A 20 QSLKAPVRIVNLWATWCGPCRKEMP------AMSKWYKAQKKGSVDMVGIALDTSDNIG-NFLKQTPVSYPIWRYTGANS 92 (151)
T ss_dssp GGCCSSEEEEEEECTTCHHHHHHHH------HHHHHHHTSCTTTEEEEEEESSCHHHHH-HHHHHSCCSSCEEEECCSCH
T ss_pred HHhCCCEEEEEEEcCcCHHHHHHHH------HHHHHHHHhccCCeEEEEEECCChHHHH-HHHHHcCCCCceEecCccch
Confidence 3347999999999999999999873 444433 236888888886533332 2211
Q ss_pred -HHHHhcC--CCCcCcEEEecCCCCcccc
Q 004888 194 -YVQALYG--GGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 194 -~~q~~~g--~~G~P~~vfl~pdG~~i~~ 219 (725)
.+...+| +.++|+++|++++|+++..
T Consensus 93 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 121 (151)
T 3raz_A 93 RNFMKTYGNTVGVLPFTVVEAPKCGYRQT 121 (151)
T ss_dssp HHHHHTTTCCSCCSSEEEEEETTTTEEEE
T ss_pred HHHHHHhCCccCCCCEEEEECCCCcEEEE
Confidence 0112246 7899999999999998764
No 115
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=98.73 E-value=9.5e-09 Score=92.53 Aligned_cols=81 Identities=19% Similarity=0.260 Sum_probs=53.9
Q ss_pred hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCC-----CCcchHHHHHH---------------HH
Q 004888 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE-----ERPDVDKVYMT---------------YV 195 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~e-----e~pd~~~~y~~---------------~~ 195 (725)
-.|||++|.|+++||+.|+.+.... .++.+..+++++.|.|+.+ +.++..+.|.+ .+
T Consensus 20 ~~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 96 (138)
T 4evm_A 20 YKGKKVYLKFWASWCSICLASLPDT---DEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKL 96 (138)
T ss_dssp GTTSEEEEEECCTTCHHHHHHHHHH---HHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHH
T ss_pred hCCCEEEEEEEcCcCHHHHHHHHHH---HHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHH
Confidence 4689999999999999999987533 3444444557888888432 11111111110 01
Q ss_pred HHhcCCCCcCcEEEecCCCCcccc
Q 004888 196 QALYGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 196 q~~~g~~G~P~~vfl~pdG~~i~~ 219 (725)
...+++.++|+++|++++|+++..
T Consensus 97 ~~~~~v~~~P~~~lid~~G~i~~~ 120 (138)
T 4evm_A 97 LETYGVRSYPTQAFIDKEGKLVKT 120 (138)
T ss_dssp HHHTTCCSSSEEEEECTTCCEEEE
T ss_pred HHHcCcccCCeEEEECCCCcEEEe
Confidence 123488999999999999998864
No 116
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=98.72 E-value=9.9e-09 Score=86.05 Aligned_cols=64 Identities=19% Similarity=0.133 Sum_probs=51.7
Q ss_pred CcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCc
Q 004888 139 VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (725)
Q Consensus 139 KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~ 216 (725)
++.+|.|+++||++|+.+... + .++++.+..++..++||.++.+++.+.| |+.|+|+++| +|++
T Consensus 3 ~~~vv~f~~~~C~~C~~~~~~-l--~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~---~G~~ 66 (85)
T 1fo5_A 3 KVKIELFTSPMCPHCPAAKRV-V--EEVANEMPDAVEVEYINVMENPQKAMEY--------GIMAVPTIVI---NGDV 66 (85)
T ss_dssp CEEEEEEECCCSSCCCTHHHH-H--HHHHHHCSSSEEEEEEESSSSCCTTTST--------TTCCSSEEEE---TTEE
T ss_pred ceEEEEEeCCCCCchHHHHHH-H--HHHHHHcCCceEEEEEECCCCHHHHHHC--------CCcccCEEEE---CCEE
Confidence 578999999999999999752 2 3455555457999999999888877655 8899999998 8887
No 117
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=98.71 E-value=2.3e-08 Score=94.14 Aligned_cols=81 Identities=17% Similarity=0.111 Sum_probs=58.4
Q ss_pred hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCcchHHHHHHHH--------------HHhc-
Q 004888 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYV--------------QALY- 199 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~pd~~~~y~~~~--------------q~~~- 199 (725)
-.||||+|.|+++||+.|+.+.... .++.+.+.+ ++..|.|+.++.++..+.|.+.. +.+.
T Consensus 32 ~~gk~vlv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (165)
T 3or5_A 32 LKGKAYIVNFFATWCPPCRSEIPDM---VQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNG 108 (165)
T ss_dssp GTTCEEEEEEECTTSHHHHHHHHHH---HHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHHT
T ss_pred cCCCEEEEEEEcCcCHHHHHHHHHH---HHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHhh
Confidence 4689999999999999999987532 234444443 48888898887666555553211 1111
Q ss_pred ----CCCCcCcEEEecCCCCcccc
Q 004888 200 ----GGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 200 ----g~~G~P~~vfl~pdG~~i~~ 219 (725)
++.++|+++|++++|+++..
T Consensus 109 ~~~~~i~~~P~~~lid~~G~i~~~ 132 (165)
T 3or5_A 109 YIDGGITGIPTSFVIDASGNVSGV 132 (165)
T ss_dssp TSTTCSCSSSEEEEECTTSBEEEE
T ss_pred hhccCCCCCCeEEEECCCCcEEEE
Confidence 67899999999999998854
No 118
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=98.71 E-value=5.4e-08 Score=90.40 Aligned_cols=81 Identities=12% Similarity=0.083 Sum_probs=55.9
Q ss_pred hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCcchHHHHHH---------------HHHHhc
Q 004888 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMT---------------YVQALY 199 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~pd~~~~y~~---------------~~q~~~ 199 (725)
-.|||++|.|+++||++|+.+.... .++.+.+.+ ++..|.|+.+..++..+.|.+ .+...+
T Consensus 28 ~~gk~~lv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 104 (152)
T 2lja_A 28 LKGKYIYIDVWATWCGPCRGELPAL---KELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAY 104 (152)
T ss_dssp TTTSEEEEEECCSSCCGGGGTHHHH---HHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHT
T ss_pred cCCCEEEEEEECCcCHhHHHHhHHH---HHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHc
Confidence 3589999999999999999887432 234444433 578888887765432222211 112235
Q ss_pred CCCCcCcEEEecCCCCcccc
Q 004888 200 GGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 200 g~~G~P~~vfl~pdG~~i~~ 219 (725)
++.++|+++|++++|+++..
T Consensus 105 ~v~~~P~~~lid~~G~i~~~ 124 (152)
T 2lja_A 105 LINGIPRFILLDRDGKIISA 124 (152)
T ss_dssp TCCSSCCEEEECTTSCEEES
T ss_pred CcCCCCEEEEECCCCeEEEc
Confidence 88999999999999998875
No 119
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=98.71 E-value=1.3e-08 Score=102.24 Aligned_cols=78 Identities=18% Similarity=0.291 Sum_probs=62.8
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcC---cEEEEEcCCCCcchHHHHHHHHHHhcCCCCc
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW---FVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~---FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~ 204 (725)
.+.++.+.+++|+++|.|+++||+.|+.|.... .++++.+... ++.++||.++.+++.+.| ++.|+
T Consensus 22 ~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~--------~v~~~ 90 (241)
T 3idv_A 22 DANFDNFVADKDTVLLEFYAPWCGHCKQFAPEY---EKIANILKDKDPPIPVAKIDATSASVLASRF--------DVSGY 90 (241)
T ss_dssp TTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHH---HHHHHHHHTSSSCCCEEEEETTTCHHHHHHT--------TCCSS
T ss_pred ccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHH---HHHHHHHhhcCCceEEEEEeccCCHHHHHhc--------CCCcC
Confidence 566777778899999999999999999998533 3455555544 999999999888776665 89999
Q ss_pred CcEEEecCCCCcc
Q 004888 205 PLSVFLSPDLKPL 217 (725)
Q Consensus 205 P~~vfl~pdG~~i 217 (725)
|+++|+. +|+++
T Consensus 91 Pt~~~~~-~g~~~ 102 (241)
T 3idv_A 91 PTIKILK-KGQAV 102 (241)
T ss_dssp SEEEEEE-TTEEE
T ss_pred CEEEEEc-CCCcc
Confidence 9999995 67766
No 120
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=98.71 E-value=1.5e-08 Score=84.98 Aligned_cols=63 Identities=16% Similarity=0.095 Sum_probs=51.6
Q ss_pred cEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCc
Q 004888 140 PIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (725)
Q Consensus 140 pI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~ 216 (725)
..+|.|+++||++|+.+... + .++++.+..++..++||.++.+++.+.| |+.|+|+++| +|++
T Consensus 3 ~~vv~f~~~~C~~C~~~~~~-l--~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~---~G~~ 65 (85)
T 1nho_A 3 VNIEVFTSPTCPYCPMAIEV-V--DEAKKEFGDKIDVEKIDIMVDREKAIEY--------GLMAVPAIAI---NGVV 65 (85)
T ss_dssp CCEEEESCSSSCCSTTHHHH-H--HHHHHHHCSSCCEEEECTTTCGGGGGGT--------CSSCSSEEEE---TTTE
T ss_pred EEEEEEECCCCcchHHHHHH-H--HHHHHHhcCCeEEEEEECCCCHHHHHhC--------CceeeCEEEE---CCEE
Confidence 46899999999999999853 3 4555566558999999999988877655 8899999998 8887
No 121
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Probab=98.70 E-value=2.5e-08 Score=90.91 Aligned_cols=80 Identities=20% Similarity=0.111 Sum_probs=56.8
Q ss_pred HHHHHHHhh--cCCcEEEEEecc-------CChhhHhhhhhccCCHHHHHHHhcCcEEEEEcC-------CCCcchHHHH
Q 004888 128 EEAFAEARK--RDVPIFLSIGYS-------TCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDR-------EERPDVDKVY 191 (725)
Q Consensus 128 ~eAl~~Ak~--e~KpI~l~~g~~-------wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~-------ee~pd~~~~y 191 (725)
.+.++.+-+ .+|||+|.|+++ ||+.|+.|.... .++++.+..+++.++||+ ++.+++.+.|
T Consensus 12 ~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l---~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~~~~ 88 (123)
T 1wou_A 12 FEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVV---REGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNL 88 (123)
T ss_dssp HHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHH---HHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHH---HHHHHHcCCCcEEEEEECCCchhhhchhHHHHHHC
Confidence 344444433 499999999999 999999998422 223333334689999999 5666665554
Q ss_pred HHHHHHhcCCCCcCcEEEecCCCCcccc
Q 004888 192 MTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 192 ~~~~q~~~g~~G~P~~vfl~pdG~~i~~ 219 (725)
++.++|+++|++. |+.+.+
T Consensus 89 --------~i~~~Pt~~~~~~-~~~~~g 107 (123)
T 1wou_A 89 --------KVTAVPTLLKYGT-PQKLVE 107 (123)
T ss_dssp --------CCCSSSEEEETTS-SCEEEG
T ss_pred --------CCCeeCEEEEEcC-CceEec
Confidence 8999999999988 444433
No 122
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=98.69 E-value=3.7e-08 Score=88.97 Aligned_cols=80 Identities=16% Similarity=0.067 Sum_probs=53.8
Q ss_pred HhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHH---------------HHHh
Q 004888 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTY---------------VQAL 198 (725)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~---------------~q~~ 198 (725)
+...||+++|.|+++||+.|+.+.... .++.+.+. ++..|.|+.++.++..+.|.+. +...
T Consensus 21 ~~~~~k~~ll~f~~~~C~~C~~~~~~l---~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 96 (136)
T 1zzo_A 21 ESLLGKPAVLWFWAPWCPTCQGEAPVV---GQVAASHP-EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWAN 96 (136)
T ss_dssp GGGTTSCEEEEEECTTCHHHHHHHHHH---HHHHHHCT-TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHH
T ss_pred HHhCCCeEEEEEEcCCChhHHHHHHHH---HHHHHHcC-CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHH
Confidence 344689999999999999999987422 13444443 6778888776533222222110 1112
Q ss_pred cCCCCcCcEEEecCCCCcc
Q 004888 199 YGGGGWPLSVFLSPDLKPL 217 (725)
Q Consensus 199 ~g~~G~P~~vfl~pdG~~i 217 (725)
+++.++|++++++++|+++
T Consensus 97 ~~i~~~P~~~~id~~g~i~ 115 (136)
T 1zzo_A 97 FGVTQQPAYAFVDPHGNVD 115 (136)
T ss_dssp TTCCSSSEEEEECTTCCEE
T ss_pred cCCCCCceEEEECCCCCEE
Confidence 4888999999999999987
No 123
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=98.69 E-value=4e-08 Score=91.54 Aligned_cols=82 Identities=16% Similarity=0.129 Sum_probs=56.1
Q ss_pred hhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCcchHHHHHH--------------HHHHhc
Q 004888 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMT--------------YVQALY 199 (725)
Q Consensus 135 k~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~pd~~~~y~~--------------~~q~~~ 199 (725)
.-.||+++|.|+++||++|+.+.... .++.+.+.+ ++..|.|+.++.++..+.|.+ .+...+
T Consensus 23 ~~~gk~vlv~F~~~~C~~C~~~~~~l---~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 99 (151)
T 2f9s_A 23 DLKGKGVFLNFWGTWCEPCKKEFPYM---ANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAY 99 (151)
T ss_dssp GGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHT
T ss_pred HcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhc
Confidence 34689999999999999999987432 134444433 577777777654432222221 112235
Q ss_pred CCCCcCcEEEecCCCCcccc
Q 004888 200 GGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 200 g~~G~P~~vfl~pdG~~i~~ 219 (725)
++.++|+++|++++|+++..
T Consensus 100 ~v~~~P~~~lid~~G~i~~~ 119 (151)
T 2f9s_A 100 DVSPLPTTFLINPEGKVVKV 119 (151)
T ss_dssp TCCSSCEEEEECTTSEEEEE
T ss_pred CCCCCCeEEEECCCCcEEEE
Confidence 88999999999999998864
No 124
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=98.65 E-value=9.4e-08 Score=89.36 Aligned_cols=80 Identities=18% Similarity=0.275 Sum_probs=55.6
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCcchHHHHH-----------------HHHHHh
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYM-----------------TYVQAL 198 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~pd~~~~y~-----------------~~~q~~ 198 (725)
.||+++|.|+++||+.|+.+.... .++.+.+.+ ++..|.|+.++.++..+.|. ..+...
T Consensus 28 ~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 104 (152)
T 2lrn_A 28 KGKYVLVDFWFAGCSWCRKETPYL---LKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLES 104 (152)
T ss_dssp TTSEEEEEEECTTCTTHHHHHHHH---HHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHH
T ss_pred CCCEEEEEEECCCChhHHHHHHHH---HHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHH
Confidence 689999999999999999986432 234444443 48888888775433222221 112223
Q ss_pred cCCCCcCcEEEecCCCCcccc
Q 004888 199 YGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 199 ~g~~G~P~~vfl~pdG~~i~~ 219 (725)
+|+.++|+++|+|++|+++..
T Consensus 105 ~~v~~~P~~~lid~~G~i~~~ 125 (152)
T 2lrn_A 105 YCIVGFPHIILVDPEGKIVAK 125 (152)
T ss_dssp TTCCSSCEEEEECTTSEEEEE
T ss_pred hCCCcCCeEEEECCCCeEEEe
Confidence 588999999999999998865
No 125
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=98.65 E-value=1.9e-08 Score=92.13 Aligned_cols=80 Identities=14% Similarity=0.035 Sum_probs=52.9
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHh-cCcEEEEEcCCC---CcchHHHHHH--------------HHHHh
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREE---RPDVDKVYMT--------------YVQAL 198 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln-~~FV~VkvD~ee---~pd~~~~y~~--------------~~q~~ 198 (725)
.+||++|.|+++||+.|+.+.... .++.+.+. +++..|.|+.+. .++..+.|.+ .+...
T Consensus 33 ~gk~~ll~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (145)
T 3erw_A 33 KGQKTILHFWTSWCPPCKKELPQF---QSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKE 109 (145)
T ss_dssp TTSEEEEEEECSSCHHHHHHHHHH---HHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHh
Confidence 789999999999999999987432 23344443 356666666643 2222222211 11123
Q ss_pred cCCCCcCcEEEecCCCCcccc
Q 004888 199 YGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 199 ~g~~G~P~~vfl~pdG~~i~~ 219 (725)
+++.++|+++|++++|+++..
T Consensus 110 ~~v~~~P~~~lid~~G~i~~~ 130 (145)
T 3erw_A 110 YHIITIPTSFLLNEKGEIEKT 130 (145)
T ss_dssp TTCCEESEEEEECTTCCEEEE
T ss_pred cCcCccCeEEEEcCCCcEEEE
Confidence 488999999999999998864
No 126
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=98.65 E-value=4.7e-08 Score=94.62 Aligned_cols=98 Identities=11% Similarity=0.100 Sum_probs=66.9
Q ss_pred HhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHH---------------HHHh
Q 004888 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTY---------------VQAL 198 (725)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~---------------~q~~ 198 (725)
+.-.||+|+|.|+++||+.|+.+. |.+.++.++++..|.|+.++.++..+.|.+. +...
T Consensus 54 ~~~~gk~vll~F~a~~C~~C~~~~------~~l~~l~~~~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (176)
T 3kh7_A 54 ADLKGKPALVNVWGTWCPSCRVEH------PELTRLAEQGVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLD 127 (176)
T ss_dssp GGGCSSCEEEEEECTTCHHHHHHH------HHHHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHH
T ss_pred HHhCCCEEEEEEECCcCHHHHHHH------HHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHH
Confidence 444689999999999999999986 6777777777888888765544433333211 1112
Q ss_pred cCCCCcCcEEEecCCCCccccc-cccCCCCCCCcchHHHHHHHHHH
Q 004888 199 YGGGGWPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKVKD 243 (725)
Q Consensus 199 ~g~~G~P~~vfl~pdG~~i~~~-tY~p~~~~~~~~~F~~~L~~i~~ 243 (725)
+++.++|+++++|++|+++... ++.++ ..+.+.|+++.+
T Consensus 128 ~~v~~~P~~~lid~~G~i~~~~~g~~~~------~~l~~~l~~~l~ 167 (176)
T 3kh7_A 128 LGVYGAPETYLIDKQGIIRHKIVGVVDQ------KVWREQLAPLYQ 167 (176)
T ss_dssp HTCCSSCEEEEECTTCBEEEEEESCCCH------HHHHHHTHHHHH
T ss_pred cCCCCCCeEEEECCCCeEEEEEcCCCCH------HHHHHHHHHHHH
Confidence 4888999999999999988652 33332 245555555443
No 127
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=98.65 E-value=4e-08 Score=90.42 Aligned_cols=81 Identities=17% Similarity=0.142 Sum_probs=55.8
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHH-hc-CcEEEEEcCCCCcchHHHHHH-----------------HHHH
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLL-ND-WFVSIKVDREERPDVDKVYMT-----------------YVQA 197 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~l-n~-~FV~VkvD~ee~pd~~~~y~~-----------------~~q~ 197 (725)
.||||+|.|+++||++|+.+.... .++.+.+ .+ ++..|.|+.+..++..+.+.+ .+..
T Consensus 32 ~gk~vll~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 108 (148)
T 3fkf_A 32 RNRYLLLNFWASWCDPQPEANAEL---KRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAK 108 (148)
T ss_dssp TTSEEEEEEECGGGCCCHHHHHHH---HHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHH
T ss_pred CCcEEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHH
Confidence 689999999999999999987432 2344444 33 378888877754422222210 1122
Q ss_pred hcCCCCcCcEEEecCCCCccccc
Q 004888 198 LYGGGGWPLSVFLSPDLKPLMGG 220 (725)
Q Consensus 198 ~~g~~G~P~~vfl~pdG~~i~~~ 220 (725)
.+|+.++|+++|++++|+++...
T Consensus 109 ~~~v~~~P~~~lid~~G~i~~~~ 131 (148)
T 3fkf_A 109 QYAILTLPTNILLSPTGKILARD 131 (148)
T ss_dssp HTTCCSSSEEEEECTTSBEEEES
T ss_pred hcCCCCcCEEEEECCCCeEEEec
Confidence 35889999999999999988653
No 128
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=98.65 E-value=3.1e-08 Score=98.81 Aligned_cols=80 Identities=18% Similarity=0.141 Sum_probs=64.5
Q ss_pred hHHHHHHHhhcCCcE-EEEEeccCChhhHhhhhhccCCHHHHHHHh----cCcEEEEEcCCCCcchHHHHHHHHHHhcCC
Q 004888 127 GEEAFAEARKRDVPI-FLSIGYSTCHWCHVMEVESFEDEGVAKLLN----DWFVSIKVDREERPDVDKVYMTYVQALYGG 201 (725)
Q Consensus 127 ~~eAl~~Ak~e~KpI-~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln----~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~ 201 (725)
.++.++..++.++|+ +|.|+++||++|+.|.... .++++.+. .++..++||.++.+++.+.| ++
T Consensus 122 ~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v 190 (226)
T 1a8l_A 122 MDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMA---HKFAIENTKAGKGKILGDMVEAIEYPEWADQY--------NV 190 (226)
T ss_dssp CHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHH---HHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHT--------TC
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCCccHHHHHHH---HHHHHhcccccCCcEEEEEEEcccCHHHHHhC--------CC
Confidence 367888888888998 9999999999999997533 45666665 47999999999888776655 89
Q ss_pred CCcCcEEEecCCCCccc
Q 004888 202 GGWPLSVFLSPDLKPLM 218 (725)
Q Consensus 202 ~G~P~~vfl~pdG~~i~ 218 (725)
.|+|+++|+ ++|+.+.
T Consensus 191 ~~~Pt~~~~-~~G~~~~ 206 (226)
T 1a8l_A 191 MAVPKIVIQ-VNGEDRV 206 (226)
T ss_dssp CSSCEEEEE-ETTEEEE
T ss_pred cccCeEEEE-eCCceeE
Confidence 999998877 5888764
No 129
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=98.64 E-value=7.7e-08 Score=89.35 Aligned_cols=89 Identities=18% Similarity=0.250 Sum_probs=60.3
Q ss_pred HhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCcchHHHHHH--------------HHHHh
Q 004888 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMT--------------YVQAL 198 (725)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~pd~~~~y~~--------------~~q~~ 198 (725)
+...||+|+|.|+++||+.|+.+.... .++.+.+.+ ++..|.|+.+..++..+.|.+ .+...
T Consensus 24 ~~~~gk~vll~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 100 (152)
T 3gl3_A 24 SDKTGSVVYLDFWASWCGPCRQSFPWM---NQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRL 100 (152)
T ss_dssp GGGTTSEEEEEEECTTCTHHHHHHHHH---HHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHH
T ss_pred HHhCCCEEEEEEECCcCHHHHHHHHHH---HHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHH
Confidence 344689999999999999999987532 234444443 377788887755433322221 11223
Q ss_pred cCCCCcCcEEEecCCCCccccc-cccCC
Q 004888 199 YGGGGWPLSVFLSPDLKPLMGG-TYFPP 225 (725)
Q Consensus 199 ~g~~G~P~~vfl~pdG~~i~~~-tY~p~ 225 (725)
+++.++|++++++++|+++... ++.+.
T Consensus 101 ~~v~~~P~~~lid~~G~i~~~~~g~~~~ 128 (152)
T 3gl3_A 101 YGVKGMPTSFLIDRNGKVLLQHVGFRPA 128 (152)
T ss_dssp TTCCSSSEEEEECTTSBEEEEEESCCTT
T ss_pred cCCCCCCeEEEECCCCCEEEEEccCCCc
Confidence 5889999999999999998753 44443
No 130
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=98.64 E-value=7.9e-08 Score=89.52 Aligned_cols=80 Identities=15% Similarity=0.186 Sum_probs=55.9
Q ss_pred HhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCcchHHHHHHH---------------HHH
Q 004888 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTY---------------VQA 197 (725)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~pd~~~~y~~~---------------~q~ 197 (725)
+.-.+||++|.|+++||++|+.+. |.+.++.++ ++..|.|+.++.++..+.|.+. +..
T Consensus 38 ~~~~gk~~ll~f~~~~C~~C~~~~------~~l~~l~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 111 (156)
T 1kng_A 38 AAFKGKVSLVNVWASWCVPCHDEA------PLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASI 111 (156)
T ss_dssp GGGTTSCEEEEEECTTCHHHHHHH------HHHHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHH
T ss_pred HHhCCCEEEEEEEcccCHhHHHHH------HHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHH
Confidence 334589999999999999999986 455555544 4777777766544332222211 112
Q ss_pred hcCCCCcCcEEEecCCCCcccc
Q 004888 198 LYGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 198 ~~g~~G~P~~vfl~pdG~~i~~ 219 (725)
.+++.++|++++++++|+++..
T Consensus 112 ~~~v~~~P~~~~id~~G~i~~~ 133 (156)
T 1kng_A 112 EWGVYGVPETFVVGREGTIVYK 133 (156)
T ss_dssp HTTCCSSCEEEEECTTSBEEEE
T ss_pred hcCcCccCeEEEEcCCCCEEEE
Confidence 2488899999999999998864
No 131
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Probab=98.63 E-value=7.9e-09 Score=97.37 Aligned_cols=73 Identities=14% Similarity=0.134 Sum_probs=48.6
Q ss_pred HHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc----C--cEEEEEc--------------------------
Q 004888 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND----W--FVSIKVD-------------------------- 180 (725)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~----~--FV~VkvD-------------------------- 180 (725)
.+...||+++|.|+++||++|+.+. |.+.++.++ + ||.|-+|
T Consensus 33 ~~~~~gk~vlv~F~a~~C~~C~~~~------~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (164)
T 2h30_A 33 VYLKKDKPTLIKFWASWCPLCLSEL------GQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVV 106 (164)
T ss_dssp GGCCTTSCEEEEECCTTCHHHHHHH------HHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEE
T ss_pred HHHhCCCEEEEEEECCCCHHHHHHH------HHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceEE
Confidence 4445789999999999999999886 344443332 2 3333322
Q ss_pred CCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCcccc
Q 004888 181 REERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 181 ~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~~ 219 (725)
.++..++.+. +++.++|+++|+|++|+++..
T Consensus 107 ~d~~~~~~~~--------~~v~~~P~~~lid~~G~i~~~ 137 (164)
T 2h30_A 107 TDNGGTIAQN--------LNISVYPSWALIGKDGDVQRI 137 (164)
T ss_dssp ECTTCHHHHH--------TTCCSSSEEEEECTTSCEEEE
T ss_pred EcCchHHHHH--------cCCCccceEEEECCCCcEEEE
Confidence 1222222222 488899999999999998864
No 132
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=98.62 E-value=7e-08 Score=90.98 Aligned_cols=81 Identities=15% Similarity=0.155 Sum_probs=58.4
Q ss_pred hhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHh-cCcEEEEEcCCC-------------------CcchHHHHHHH
Q 004888 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREE-------------------RPDVDKVYMTY 194 (725)
Q Consensus 135 k~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln-~~FV~VkvD~ee-------------------~pd~~~~y~~~ 194 (725)
.-.||||+|.|+++||+.|+.+.... .++.+.+. .+++.|.|+.++ ..++.+.
T Consensus 38 ~~~gk~vll~F~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~---- 110 (158)
T 3hdc_A 38 QYRGKIVLVNFWASWCPYCRDEMPSM---DRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQR---- 110 (158)
T ss_dssp GGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHH----
T ss_pred HhCCCEEEEEEECCcCHHHHHHHHHH---HHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHH----
Confidence 34689999999999999999877432 23444444 468888887765 2333333
Q ss_pred HHHhcCCCCcCcEEEecCCCCcccc-ccccCCC
Q 004888 195 VQALYGGGGWPLSVFLSPDLKPLMG-GTYFPPE 226 (725)
Q Consensus 195 ~q~~~g~~G~P~~vfl~pdG~~i~~-~tY~p~~ 226 (725)
+++.++|+++|++++|+++.. .++.+.+
T Consensus 111 ----~~v~~~P~~~lid~~G~i~~~~~G~~~~~ 139 (158)
T 3hdc_A 111 ----YGANRLPDTFIVDRKGIIRQRVTGGIEWD 139 (158)
T ss_dssp ----TTCCSSSEEEEECTTSBEEEEEESCCCTT
T ss_pred ----hCCCCcceEEEEcCCCCEEEEEeCCCccc
Confidence 388999999999999998865 3455544
No 133
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=98.61 E-value=8.4e-08 Score=89.31 Aligned_cols=102 Identities=14% Similarity=0.098 Sum_probs=64.6
Q ss_pred hhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCC-cchHHHHHHH--------------HHHh
Q 004888 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREER-PDVDKVYMTY--------------VQAL 198 (725)
Q Consensus 135 k~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~-pd~~~~y~~~--------------~q~~ 198 (725)
.-.||+|+|.|+++||+.|+.+.... .++.+.+.+ ++..|.|+.+.. ++..+.|.+. +...
T Consensus 25 ~~~gk~vll~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 101 (154)
T 3kcm_A 25 DLKGQVVIVNFWATWCPPCREEIPSM---MRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKL 101 (154)
T ss_dssp GGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHH
T ss_pred hcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHH
Confidence 34789999999999999999987533 344444443 577777777654 3222222111 1123
Q ss_pred cCCCCcCcEEEecCCCCccccc-cccCCCCCCCcchHHHHHHHHHH
Q 004888 199 YGGGGWPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKVKD 243 (725)
Q Consensus 199 ~g~~G~P~~vfl~pdG~~i~~~-tY~p~~~~~~~~~F~~~L~~i~~ 243 (725)
+++.++|++++++++|+++... ++.+. ..+.+.+.|+++..
T Consensus 102 ~~v~~~P~~~lid~~G~i~~~~~g~~~~----~~~~l~~~l~~l~~ 143 (154)
T 3kcm_A 102 YGTTGVPETFVIDRHGVILKKVVGAMEW----DHPEVIAFLNNELS 143 (154)
T ss_dssp HTCCSBCEEEEECTTSBEEEEEESCCCT----TSHHHHHHHHTC--
T ss_pred hCCCCCCeEEEECCCCcEEEEEcCCCcc----ccHHHHHHHHHHHH
Confidence 4889999999999999998642 33332 23456666665543
No 134
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=98.61 E-value=7.5e-08 Score=91.16 Aligned_cols=94 Identities=13% Similarity=0.188 Sum_probs=62.2
Q ss_pred hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc--CcEEEEEcCC------------------CCcchHHHHHHH-
Q 004888 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDRE------------------ERPDVDKVYMTY- 194 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~--~FV~VkvD~e------------------e~pd~~~~y~~~- 194 (725)
-.||+++|.|+++||+.|+.+. |.+.++..+ ++..|.|+.+ +.++..+.|.+.
T Consensus 35 ~~gk~~lv~F~~~~C~~C~~~~------~~l~~l~~~~~~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (165)
T 3ha9_A 35 VGGDVVILWFMAAWCPSCVYMA------DLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANY 108 (165)
T ss_dssp CCSSEEEEEEECTTCTTHHHHH------HHHHHHHHHCTTEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHH
T ss_pred hCCCEEEEEEECCCCcchhhhH------HHHHHHHHHcCCcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHc
Confidence 4689999999999999999987 455554443 5677777665 344333333221
Q ss_pred -------------HHHhcCCCCcCcEEEecCCCCccccccccCCCCCCCcchHHHHHHHH
Q 004888 195 -------------VQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKV 241 (725)
Q Consensus 195 -------------~q~~~g~~G~P~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i 241 (725)
+...+++.++|+++|+|++|+++. .++.|. ...+.+.|+++
T Consensus 109 ~~~~~~~~~d~~~~~~~~~v~~~P~~~lid~~G~i~~-~g~~~~-----~~~l~~~l~~l 162 (165)
T 3ha9_A 109 GDPSWIMVMDDGSLVEKFNVRSIDYIVIMDKSSNVLY-AGTTPS-----LGELESVIKSV 162 (165)
T ss_dssp SCTTSEEEECCSHHHHHTTCCSSSEEEEEETTCCEEE-EEESCC-----HHHHHHHHHHC
T ss_pred CCCCeeEEeChHHHHHHhCCCCceEEEEEcCCCcEEE-eCCCCC-----HHHHHHHHHHH
Confidence 112358889999999999999998 555532 12455555543
No 135
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}
Probab=98.59 E-value=1.8e-08 Score=90.40 Aligned_cols=72 Identities=11% Similarity=-0.010 Sum_probs=52.1
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCC----CCcchHHHHHHHHHHhcCCCC
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE----ERPDVDKVYMTYVQALYGGGG 203 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~e----e~pd~~~~y~~~~q~~~g~~G 203 (725)
+++++.|+..+|+++|.|+++||+.|+.|.. .+.++ .+.|-.|.+|.+ +.+++.+.| ++.|
T Consensus 2 ~~~~~la~~~~k~~vV~F~A~WC~~C~~~~p------~~~~~-a~~~~~v~~~~~~~~~~~~~l~~~~--------~V~~ 66 (106)
T 3kp8_A 2 PLAVGLAAHLRQIGGTMYGAYWCPHCQDQKE------LFGAA-FDQVPYVECSPNGPGTPQAQECTEA--------GITS 66 (106)
T ss_dssp HHHHHHHHHHHHHTCEEEECTTCHHHHHHHH------HHGGG-GGGSCEEESCTTCTTSCCCHHHHHT--------TCCS
T ss_pred hHhhHHHHhcCCCEEEEEECCCCHHHHHHHH------HHHHH-HHhCCEEEEecccccchhHHHHHHc--------CCeE
Confidence 5678888889999999999999999999973 33222 233434455543 456666554 8999
Q ss_pred cCcEEEecCCCCcc
Q 004888 204 WPLSVFLSPDLKPL 217 (725)
Q Consensus 204 ~P~~vfl~pdG~~i 217 (725)
+|+++| +|+++
T Consensus 67 ~PT~~i---~G~~~ 77 (106)
T 3kp8_A 67 YPTWII---NGRTY 77 (106)
T ss_dssp SSEEEE---TTEEE
T ss_pred eCEEEE---CCEEe
Confidence 999777 78764
No 136
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}
Probab=98.59 E-value=5.9e-08 Score=89.71 Aligned_cols=84 Identities=17% Similarity=0.112 Sum_probs=61.8
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHh-cCcEEEEEcCCCCcchHHHHHH----------------HHHHhc
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMT----------------YVQALY 199 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln-~~FV~VkvD~ee~pd~~~~y~~----------------~~q~~~ 199 (725)
.||+|+|+|+++||+.|+.+....-++|.+.+.+. +++..|.|+.++.++.-+.+.+ .....+
T Consensus 30 ~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 109 (142)
T 3eur_A 30 PAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLY 109 (142)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCS
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhc
Confidence 47999999999999999998876666666777664 4688888888765443222211 012235
Q ss_pred CCCCcCcEEEecCCCCccccc
Q 004888 200 GGGGWPLSVFLSPDLKPLMGG 220 (725)
Q Consensus 200 g~~G~P~~vfl~pdG~~i~~~ 220 (725)
++.++|+++++|++|+++...
T Consensus 110 ~v~~~P~~~lid~~G~i~~~~ 130 (142)
T 3eur_A 110 DLRAIPTLYLLDKNKTVLLKD 130 (142)
T ss_dssp CCTTCSEEEEECTTCBEEEEE
T ss_pred CCCcCCeEEEECCCCcEEecC
Confidence 788999999999999998753
No 137
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=98.57 E-value=1.5e-07 Score=88.08 Aligned_cols=82 Identities=15% Similarity=0.073 Sum_probs=52.0
Q ss_pred hhcCCcEEEEEeccCChhhHhh-hhhccCCHHHHHHHh-cCcEEEEEcCC------CCcchHHHHHHH------------
Q 004888 135 RKRDVPIFLSIGYSTCHWCHVM-EVESFEDEGVAKLLN-DWFVSIKVDRE------ERPDVDKVYMTY------------ 194 (725)
Q Consensus 135 k~e~KpI~l~~g~~wC~~C~~M-e~e~f~d~eVa~~ln-~~FV~VkvD~e------e~pd~~~~y~~~------------ 194 (725)
.-.||||+|+|+++||++|+.+ .. .+. ++.+.+. +++..|.|+.+ +.++..+.|.+.
T Consensus 25 ~~~gk~vlv~f~a~wC~~C~~~~~~-~l~--~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 101 (158)
T 3eyt_A 25 DLRGKVIVIEAFQMLCPGCVMHGIP-LAQ--KVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQP 101 (158)
T ss_dssp GGTTSEEEEEEECTTCHHHHHTHHH-HHH--HHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECC
T ss_pred HhCCCEEEEEEECCcCcchhhhhhH-HHH--HHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCc
Confidence 3458999999999999999984 42 111 2333333 35677776652 122222222111
Q ss_pred -------HHHhcCCCCcCcEEEecCCCCcccc
Q 004888 195 -------VQALYGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 195 -------~q~~~g~~G~P~~vfl~pdG~~i~~ 219 (725)
+...+|+.++|+++|++++|+++..
T Consensus 102 ~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 133 (158)
T 3eyt_A 102 GDGAMPRTMAAYQMRGTPSLLLIDKAGDLRAH 133 (158)
T ss_dssp CSSSSCHHHHHTTCCSSSEEEEECTTSEEEEE
T ss_pred cchhhHHHHHHcCCCCCCEEEEECCCCCEEEE
Confidence 1223588999999999999998864
No 138
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=98.57 E-value=9.9e-08 Score=89.40 Aligned_cols=83 Identities=12% Similarity=0.113 Sum_probs=52.3
Q ss_pred HhhcCCcEEEEEeccCChhhHh-hhhhccCCHHHHHHHh-cCcEEEEEcCC------CCcchHHHHHHH-----------
Q 004888 134 ARKRDVPIFLSIGYSTCHWCHV-MEVESFEDEGVAKLLN-DWFVSIKVDRE------ERPDVDKVYMTY----------- 194 (725)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~~C~~-Me~e~f~d~eVa~~ln-~~FV~VkvD~e------e~pd~~~~y~~~----------- 194 (725)
+.-.||||+|+|+++||+.|+. |.. .+ .++.+.+. +++..|.|+.+ +.++..+.|.+.
T Consensus 26 ~~~~gk~vlv~F~a~~C~~C~~e~~~-~l--~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 102 (160)
T 3lor_A 26 EDLRGKVVVVEVFQMLCPGCVNHGVP-QA--QKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDM 102 (160)
T ss_dssp HHHTTSEEEEEEECTTCHHHHHTHHH-HH--HHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEEC
T ss_pred HHhCCCEEEEEEEcCCCcchhhhhhH-HH--HHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECC
Confidence 3446999999999999999998 442 11 12333333 24777777652 222222222211
Q ss_pred ---------HHHhcCCCCcCcEEEecCCCCcccc
Q 004888 195 ---------VQALYGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 195 ---------~q~~~g~~G~P~~vfl~pdG~~i~~ 219 (725)
+...+|+.++|+++|++++|+++..
T Consensus 103 ~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 136 (160)
T 3lor_A 103 PREGQRIPSTMKKYRLEGTPSIILADRKGRIRQV 136 (160)
T ss_dssp CCTTCSSCHHHHHTTCCSSSEEEEECTTSBEEEE
T ss_pred ccccchhhhHHHhcccCccceEEEECCCCcEEEE
Confidence 1123488999999999999998865
No 139
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.55 E-value=2.2e-07 Score=86.30 Aligned_cols=67 Identities=12% Similarity=0.067 Sum_probs=50.7
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCc
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~ 216 (725)
.+|||+|+|+++||+.|+.|... |. ++++.. .++..++||.++.++ . +++.++|+++|+. +|++
T Consensus 29 ~~~~vvv~f~a~wC~~C~~~~p~-l~--~la~~~-~~v~~~~vd~~~~~~---~--------~~i~~~Pt~~~~~-~G~~ 92 (135)
T 2dbc_A 29 KDLWVVIHLYRSSVPMCLVVNQH-LS--VLARKF-PETKFVKAIVNSCIE---H--------YHDNCLPTIFVYK-NGQI 92 (135)
T ss_dssp SSCEEEEEECCTTCHHHHHHHHH-HH--HHHHHC-SSEEEEEECCSSSCS---S--------CCSSCCSEEEEES-SSSC
T ss_pred CCCEEEEEEECCCChHHHHHHHH-HH--HHHHHC-CCcEEEEEEhhcCcc---c--------CCCCCCCEEEEEE-CCEE
Confidence 45899999999999999999842 21 233332 257889999987652 2 3889999999997 8998
Q ss_pred ccc
Q 004888 217 LMG 219 (725)
Q Consensus 217 i~~ 219 (725)
+..
T Consensus 93 v~~ 95 (135)
T 2dbc_A 93 EGK 95 (135)
T ss_dssp SEE
T ss_pred EEE
Confidence 754
No 140
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A
Probab=98.55 E-value=1.9e-07 Score=86.29 Aligned_cols=83 Identities=12% Similarity=0.079 Sum_probs=56.3
Q ss_pred HhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHh--cCcEEEEEcCCCCcchHHHHH----------------HHH
Q 004888 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVYM----------------TYV 195 (725)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln--~~FV~VkvD~ee~pd~~~~y~----------------~~~ 195 (725)
+.-.||+|+|+|+++||+.|+.+.... .++++.+. +++..|.|+.++.++..+.|. ..+
T Consensus 24 ~~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 100 (144)
T 1i5g_A 24 PSLAGKTVFFYFSASWCPPSRAFTPQL---IDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFL 100 (144)
T ss_dssp GGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHH
T ss_pred HHcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHH
Confidence 344689999999999999999887432 24555555 367777777765432111111 111
Q ss_pred HHhcCCCCcCcEEEec-CCCCcccc
Q 004888 196 QALYGGGGWPLSVFLS-PDLKPLMG 219 (725)
Q Consensus 196 q~~~g~~G~P~~vfl~-pdG~~i~~ 219 (725)
...+++.++|+++|++ ++|+++..
T Consensus 101 ~~~~~v~~~P~~~lid~~~G~i~~~ 125 (144)
T 1i5g_A 101 TTGFDVKSIPTLVGVEADSGNIITT 125 (144)
T ss_dssp HHHTTCCSSSEEEEEETTTCCEEES
T ss_pred HHHcCCCCCCEEEEEECCCCcEEec
Confidence 2235889999999999 89998864
No 141
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}
Probab=98.53 E-value=1.2e-07 Score=90.82 Aligned_cols=83 Identities=17% Similarity=0.147 Sum_probs=56.0
Q ss_pred HhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc--CcEEEEEcCCCCcchHHHHH----------------HHH
Q 004888 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYM----------------TYV 195 (725)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~--~FV~VkvD~ee~pd~~~~y~----------------~~~ 195 (725)
+.-.||+|+|+|+++||+.|+.+.... .++.+.+.+ ++..|.|+.++.++..+.|. ..+
T Consensus 44 ~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 120 (165)
T 3s9f_A 44 DSLSGKTVFFYFSASWCPPCRGFTPQL---VEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEAL 120 (165)
T ss_dssp GGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHH
T ss_pred HHcCCCEEEEEEECCcChhHHHHHHHH---HHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHH
Confidence 444689999999999999999987433 244455543 56666666665432111111 112
Q ss_pred HHhcCCCCcCcEEEecCC-CCcccc
Q 004888 196 QALYGGGGWPLSVFLSPD-LKPLMG 219 (725)
Q Consensus 196 q~~~g~~G~P~~vfl~pd-G~~i~~ 219 (725)
...+++.++|+++|++++ |+++..
T Consensus 121 ~~~~~v~~~Pt~~lid~~~G~iv~~ 145 (165)
T 3s9f_A 121 TKKYSVESIPTLIGLNADTGDTVTT 145 (165)
T ss_dssp HHHTTCCSSSEEEEEETTTCCEEES
T ss_pred HHHcCCCCCCEEEEEeCCCCEEEec
Confidence 233589999999999998 998864
No 142
>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}
Probab=97.93 E-value=1.1e-08 Score=96.45 Aligned_cols=108 Identities=17% Similarity=0.214 Sum_probs=67.3
Q ss_pred HHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHH--hcCcEEEEEcCCCCcchHHHHHHHHH----------
Q 004888 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLL--NDWFVSIKVDREERPDVDKVYMTYVQ---------- 196 (725)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~l--n~~FV~VkvD~ee~pd~~~~y~~~~q---------- 196 (725)
+.+..+.-.||||+|.|+++||++|+.+... +.. ++.+.+ ++++..|.|+.++.++..+.|.+...
T Consensus 24 ~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~-l~~-~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~ 101 (159)
T 2ls5_A 24 KQVTLSSLRGKVVMLQFTASWCGVCRKEMPF-IEK-DIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPG 101 (159)
Confidence 3445555578999999999999999987643 333 122222 35688888887765554444432110
Q ss_pred ----HhcC--CCCcCcEEEecCCCCccccccccCCCCCCCcchHHHHHHHHHHH
Q 004888 197 ----ALYG--GGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDA 244 (725)
Q Consensus 197 ----~~~g--~~G~P~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i~~~ 244 (725)
..++ ..|+|+++|+|++|+++.......+ +.+.++|+++.+.
T Consensus 102 ~~~~~~~~~~~~~~P~~~lid~~G~i~~~~~g~~~------~~l~~~l~~l~~~ 149 (159)
T 2ls5_A 102 ADIFAKYALRDAGITRNVLIDREGKIVKLTRLYNE------EEFASLVQQINEM 149 (159)
Confidence 1123 4579999999999998865321222 2466666666544
No 143
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=98.52 E-value=2e-08 Score=94.95 Aligned_cols=76 Identities=14% Similarity=0.055 Sum_probs=46.4
Q ss_pred HHHHHHhhcCCcEEEEEeccC--ChhhHhhhhhccCCHHHHHHHh--cCcE--EEEEcCCCCcchHHHHHHHHHHhcCCC
Q 004888 129 EAFAEARKRDVPIFLSIGYST--CHWCHVMEVESFEDEGVAKLLN--DWFV--SIKVDREERPDVDKVYMTYVQALYGGG 202 (725)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~w--C~~C~~Me~e~f~d~eVa~~ln--~~FV--~VkvD~ee~pd~~~~y~~~~q~~~g~~ 202 (725)
+-|+..-+++++++|.|+++| |+.|+.|. |.+.++.+ .++. .++||.++.+++.+.| ++.
T Consensus 25 ~~f~~~i~~~~~~vv~f~~~~~~C~~C~~l~------P~l~~la~~~~~v~~~~~~Vd~d~~~~la~~~--------~V~ 90 (142)
T 2es7_A 25 STVDDWIKRVGDGVILLSSDPRRTPEVSDNP------VMIAELLREFPQFDWQVAVADLEQSEAIGDRF--------NVR 90 (142)
T ss_dssp C--------CCSEEEEECCCSCC----CCHH------HHHHHHHHTCTTSCCEEEEECHHHHHHHHHTT--------TCC
T ss_pred ccHHHHHHhCCCEEEEEECCCCCCccHHHHH------HHHHHHHHHhcccceeEEEEECCCCHHHHHhc--------CCC
Confidence 445555556777899999888 99999997 34444333 3577 8999998877776655 899
Q ss_pred CcCcEEEecCCCCcccc
Q 004888 203 GWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 203 G~P~~vfl~pdG~~i~~ 219 (725)
|+||++|+ .+|+++..
T Consensus 91 ~iPT~~~f-k~G~~v~~ 106 (142)
T 2es7_A 91 RFPATLVF-TDGKLRGA 106 (142)
T ss_dssp SSSEEEEE-SCC----C
T ss_pred cCCeEEEE-eCCEEEEE
Confidence 99999999 89998754
No 144
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=98.51 E-value=1.3e-07 Score=94.72 Aligned_cols=78 Identities=24% Similarity=0.319 Sum_probs=60.3
Q ss_pred HHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcC---cEEEEEcCCCCcchHHHHHHHHHHhcCCCCcC
Q 004888 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW---FVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (725)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~---FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P 205 (725)
+.++...+++|+++|.|+++||+.|+.|.... .++++.+... +..++||.++.+++.+.| ++.++|
T Consensus 138 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~---~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~P 206 (241)
T 3idv_A 138 ENFDEVVNDADIILVEFYAPWCGHCKKLAPEY---EKAAKELSKRSPPIPLAKVDATAETDLAKRF--------DVSGYP 206 (241)
T ss_dssp TTHHHHHHHCSEEEEEEECTTCTGGGGTHHHH---HHHHHHHHTSSSCCCEEEEETTTCHHHHHHT--------TCCSSS
T ss_pred HHHHHhhccCCeEEEEEECCCCHHHHHhHHHH---HHHHHHHhccCCcEEEEEEECCCCHHHHHHc--------CCcccC
Confidence 44555667789999999999999999997432 2455555433 899999999988877665 889999
Q ss_pred cEEEecCCCCccc
Q 004888 206 LSVFLSPDLKPLM 218 (725)
Q Consensus 206 ~~vfl~pdG~~i~ 218 (725)
+++|+. +|+++.
T Consensus 207 t~~~~~-~g~~~~ 218 (241)
T 3idv_A 207 TLKIFR-KGRPYD 218 (241)
T ss_dssp EEEEEE-TTEEEE
T ss_pred EEEEEE-CCeEEE
Confidence 999986 577664
No 145
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=98.51 E-value=1.7e-07 Score=95.30 Aligned_cols=71 Identities=14% Similarity=0.115 Sum_probs=55.4
Q ss_pred HhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc---CcEEEEEcC--CCCcchHHHHHHHHHHhcCCCCcCcEE
Q 004888 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDR--EERPDVDKVYMTYVQALYGGGGWPLSV 208 (725)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~---~FV~VkvD~--ee~pd~~~~y~~~~q~~~g~~G~P~~v 208 (725)
..+.+|+++|.|+++||+.|+.|.... .++++.+.. .+..++||. ++.+++.+.| ++.++|+++
T Consensus 26 i~~~~~~vlv~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~--------~v~~~Pt~~ 94 (244)
T 3q6o_A 26 VLGSRSAWAVEFFASWCGHCIAFAPTW---XALAEDVKAWRPALYLAALDCAEETNSAVCRDF--------NIPGFPTVR 94 (244)
T ss_dssp HSSCSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHT--------TCCSSSEEE
T ss_pred HhhCCCeEEEEEECCcCHHHHHHHHHH---HHHHHHHHhccCcEEEEEEeCCchhhHHHHHHc--------CCCccCEEE
Confidence 356679999999999999999998533 455666655 688999998 5566666554 899999999
Q ss_pred EecCCCC
Q 004888 209 FLSPDLK 215 (725)
Q Consensus 209 fl~pdG~ 215 (725)
|+++.++
T Consensus 95 ~~~~g~~ 101 (244)
T 3q6o_A 95 FFXAFTX 101 (244)
T ss_dssp EECTTCC
T ss_pred EEeCCCc
Confidence 9997433
No 146
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Probab=98.50 E-value=3.2e-07 Score=85.07 Aligned_cols=82 Identities=10% Similarity=0.003 Sum_probs=55.7
Q ss_pred HhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHh--cCcEEEEEcCCCCcchHHHH-----------------HHH
Q 004888 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVY-----------------MTY 194 (725)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln--~~FV~VkvD~ee~pd~~~~y-----------------~~~ 194 (725)
+.-.||+|+|+|+++||+.|+.+.... .++.+.+. +++..|.|+.++.++..+.| ...
T Consensus 24 ~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 100 (146)
T 1o8x_A 24 KSLAGKLVFFYFSASWCPPARGFTPQL---IEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKL 100 (146)
T ss_dssp GGGTTCEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHH
T ss_pred HHhCCCEEEEEEEccCCHHHHHHHHHH---HHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHH
Confidence 344689999999999999999887432 24555555 36677777766533211111 112
Q ss_pred HHHhcCCCCcCcEEEec-CCCCcccc
Q 004888 195 VQALYGGGGWPLSVFLS-PDLKPLMG 219 (725)
Q Consensus 195 ~q~~~g~~G~P~~vfl~-pdG~~i~~ 219 (725)
. ..+++.++|+++|++ ++|+++..
T Consensus 101 ~-~~~~v~~~Pt~~lid~~~G~i~~~ 125 (146)
T 1o8x_A 101 S-KHFNVESIPTLIGVDADSGDVVTT 125 (146)
T ss_dssp H-HHTTCCSSSEEEEEETTTCCEEES
T ss_pred H-HHhCCCCCCEEEEEECCCCeEEEe
Confidence 2 235889999999999 89998864
No 147
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.50 E-value=3.2e-07 Score=85.19 Aligned_cols=81 Identities=15% Similarity=0.188 Sum_probs=50.5
Q ss_pred hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCC-cchHHHHHH--------------HHHHhc
Q 004888 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREER-PDVDKVYMT--------------YVQALY 199 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~-pd~~~~y~~--------------~~q~~~ 199 (725)
-.||+++|.|+++||+.|+.+.... .++.+.+.+ ++..|-|+.+.. ++..+.|.+ .+...+
T Consensus 26 ~~gk~~lv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 102 (153)
T 2l5o_A 26 LQGKVTLINFWFPSCPGCVSEMPKI---IKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAF 102 (153)
T ss_dssp HTTCEEEEEEECTTCTTHHHHHHHH---HHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHH
T ss_pred hCCCEEEEEEECCCCccHHHHHHHH---HHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHc
Confidence 3689999999999999999987432 234444443 365655553211 111111100 011123
Q ss_pred CCCCcCcEEEecCCCCcccc
Q 004888 200 GGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 200 g~~G~P~~vfl~pdG~~i~~ 219 (725)
++.++|+++|++++|+++..
T Consensus 103 ~i~~~P~~~lid~~G~i~~~ 122 (153)
T 2l5o_A 103 GTQVYPTSVLIGKKGEILKT 122 (153)
T ss_dssp TCCSSSEEEEECSSSCCCEE
T ss_pred CCCccCeEEEECCCCcEEEE
Confidence 88899999999999998754
No 148
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=98.49 E-value=2.1e-07 Score=89.89 Aligned_cols=83 Identities=12% Similarity=0.131 Sum_probs=56.9
Q ss_pred HhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcC-c------EEEEEcCCC-CcchHHHHHHHHHH--------
Q 004888 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-F------VSIKVDREE-RPDVDKVYMTYVQA-------- 197 (725)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~-F------V~VkvD~ee-~pd~~~~y~~~~q~-------- 197 (725)
+.-.||+|+|+|+++||+.|+.+.... .++.+.+.+. + ..|.|+.++ .++..+.|.+....
T Consensus 55 ~~~~gk~vlv~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~ 131 (183)
T 3lwa_A 55 SDFENQVVILNAWGQWCAPCRSESDDL---QIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDP 131 (183)
T ss_dssp GGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECT
T ss_pred HHhCCCEEEEEEECCcCHhHHHHHHHH---HHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECC
Confidence 344689999999999999999886432 2344445443 7 888888876 56555555332110
Q ss_pred -------h--cCCCCcCcEEEecCCCCcccc
Q 004888 198 -------L--YGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 198 -------~--~g~~G~P~~vfl~pdG~~i~~ 219 (725)
+ +++.++|++++++++|+++..
T Consensus 132 ~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 162 (183)
T 3lwa_A 132 PFMTAASLGGVPASVIPTTIVLDKQHRPAAV 162 (183)
T ss_dssp TCGGGGGTTTCCTTCCSEEEEECTTSCEEEE
T ss_pred cchHHHHhccCCCCCCCeEEEECCCCcEEEE
Confidence 0 146789999999999999864
No 149
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Probab=98.49 E-value=3.4e-07 Score=84.32 Aligned_cols=81 Identities=12% Similarity=0.080 Sum_probs=54.7
Q ss_pred hhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHh--cCcEEEEEcCCCCcchHHHH-----------------HHHH
Q 004888 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVY-----------------MTYV 195 (725)
Q Consensus 135 k~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln--~~FV~VkvD~ee~pd~~~~y-----------------~~~~ 195 (725)
.-.||+|+|.|+++||+.|+.+.... .++.+.+. +++..|.|+.+..++..+.| ....
T Consensus 25 ~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (144)
T 1o73_A 25 SLVGKTVFLYFSASWCPPCRGFTPVL---AEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELG 101 (144)
T ss_dssp GGTTCEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHH
T ss_pred HhCCCEEEEEEECcCCHHHHHHHHHH---HHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHH
Confidence 34689999999999999999987432 23444444 36777777766543211111 1122
Q ss_pred HHhcCCCCcCcEEEec-CCCCcccc
Q 004888 196 QALYGGGGWPLSVFLS-PDLKPLMG 219 (725)
Q Consensus 196 q~~~g~~G~P~~vfl~-pdG~~i~~ 219 (725)
+ .+++.++|+++|++ ++|+++..
T Consensus 102 ~-~~~v~~~Pt~~lid~~~G~i~~~ 125 (144)
T 1o73_A 102 K-TFGVESIPTLITINADTGAIIGT 125 (144)
T ss_dssp H-HHTCCSSSEEEEEETTTCCEEES
T ss_pred H-HcCCCCCCEEEEEECCCCeEEec
Confidence 2 34889999999999 89998864
No 150
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}
Probab=98.48 E-value=3.3e-07 Score=96.87 Aligned_cols=85 Identities=14% Similarity=0.200 Sum_probs=62.7
Q ss_pred CCCccccchHHHHHHHh-hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCC--CCcchHHHHHHHH
Q 004888 119 NPVDWFAWGEEAFAEAR-KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE--ERPDVDKVYMTYV 195 (725)
Q Consensus 119 ~~V~W~~~~~eAl~~Ak-~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~e--e~pd~~~~y~~~~ 195 (725)
.+-++.....+-++..- +.+|||+|.|+++||+.|+.|.... .++++.++..+..++||.+ +.+++.+.|
T Consensus 15 ~~~~vv~lt~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~---~~la~~~~~~~~~~~v~~d~~~~~~l~~~~---- 87 (298)
T 3ed3_A 15 SDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTF---RKAAKRLDGVVQVAAVNCDLNKNKALCAKY---- 87 (298)
T ss_dssp SCTTCEECCHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTSTTTHHHHHHT----
T ss_pred CCCCeEEeCHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHccCCcEEEEEEccCccCHHHHHhC----
Confidence 33444455566777665 6799999999999999999998543 4667777666777777665 556665554
Q ss_pred HHhcCCCCcCcEEEecCCC
Q 004888 196 QALYGGGGWPLSVFLSPDL 214 (725)
Q Consensus 196 q~~~g~~G~P~~vfl~pdG 214 (725)
++.|+|+++|+.+.+
T Consensus 88 ----~I~~~Pt~~~~~~g~ 102 (298)
T 3ed3_A 88 ----DVNGFPTLMVFRPPK 102 (298)
T ss_dssp ----TCCBSSEEEEEECCC
T ss_pred ----CCCccceEEEEECCc
Confidence 899999999998643
No 151
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=98.47 E-value=1.7e-07 Score=77.25 Aligned_cols=65 Identities=17% Similarity=0.034 Sum_probs=49.6
Q ss_pred EEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCccccc
Q 004888 141 IFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGG 220 (725)
Q Consensus 141 I~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~~~ 220 (725)
+.|.|+++||+.|+.|.... .++++.++.++..++|| .+++.+.| |+.|+|+++| +|+++..
T Consensus 2 ~~v~f~a~wC~~C~~~~~~l---~~~~~~~~~~~~~~~v~---~~~~~~~~--------~v~~~Pt~~~---~G~~~~~- 63 (77)
T 1ilo_A 2 MKIQIYGTGCANCQMLEKNA---REAVKELGIDAEFEKIK---EMDQILEA--------GLTALPGLAV---DGELKIM- 63 (77)
T ss_dssp EEEEEECSSSSTTHHHHHHH---HHHHHHTTCCEEEEEEC---SHHHHHHH--------TCSSSSCEEE---TTEEEEC-
T ss_pred cEEEEEcCCChhHHHHHHHH---HHHHHHcCCceEEEEec---CHHHHHHC--------CCCcCCEEEE---CCEEEEc-
Confidence 46899999999999998543 45666666678899998 45554444 8999999998 8988765
Q ss_pred ccc
Q 004888 221 TYF 223 (725)
Q Consensus 221 tY~ 223 (725)
+..
T Consensus 64 G~~ 66 (77)
T 1ilo_A 64 GRV 66 (77)
T ss_dssp SSC
T ss_pred CCC
Confidence 444
No 152
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=98.45 E-value=6.2e-07 Score=83.54 Aligned_cols=80 Identities=15% Similarity=0.064 Sum_probs=55.6
Q ss_pred cCCcEEEEEeccCChh--hHhhhhhccCCHHHHHHH-h-cCcEEEEEcCCCCcchHHHHHH-----------------HH
Q 004888 137 RDVPIFLSIGYSTCHW--CHVMEVESFEDEGVAKLL-N-DWFVSIKVDREERPDVDKVYMT-----------------YV 195 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~--C~~Me~e~f~d~eVa~~l-n-~~FV~VkvD~ee~pd~~~~y~~-----------------~~ 195 (725)
.||||+|+|+++||+. |+.+.... .++.+.+ . +++..|.|+.++.++.-+.|.+ .+
T Consensus 32 ~gk~vll~F~a~~C~~v~C~~~~~~l---~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 108 (150)
T 3fw2_A 32 KQKSLLINFWASWNDSISQKQSNSEL---REIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEV 108 (150)
T ss_dssp TTSEEEEEEECTTCCCHHHHHHHHHH---HHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHH
T ss_pred CCCEEEEEEEeCCCCchHHHHHHHHH---HHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHH
Confidence 5899999999999999 99876321 1333444 3 2477888877765433333321 12
Q ss_pred HHhcCCCCcCcEEEecCCCCcccc
Q 004888 196 QALYGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 196 q~~~g~~G~P~~vfl~pdG~~i~~ 219 (725)
...+|+.++|+++++|++|+++..
T Consensus 109 ~~~~~v~~~P~~~lid~~G~i~~~ 132 (150)
T 3fw2_A 109 AKQYSIYKIPANILLSSDGKILAK 132 (150)
T ss_dssp HHHTTCCSSSEEEEECTTSBEEEE
T ss_pred HHHcCCCccCeEEEECCCCEEEEc
Confidence 223588999999999999998865
No 153
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}
Probab=98.44 E-value=4.4e-07 Score=85.41 Aligned_cols=80 Identities=6% Similarity=0.033 Sum_probs=55.3
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCcchHHHHHH---------------HHHHhcC
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMT---------------YVQALYG 200 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~pd~~~~y~~---------------~~q~~~g 200 (725)
.||||+|+|+++||+.|+.+... + .++.+.+.+ ++..|.|+.++.++..+.|.. .+...++
T Consensus 34 ~gk~vll~F~a~wC~~C~~~~~~-l--~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 110 (152)
T 2lrt_A 34 KGKVVLIDFTVYNNAMSAAHNLA-L--RELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYN 110 (152)
T ss_dssp GGSEEEEEEECTTCHHHHHHHHH-H--HHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHT
T ss_pred CCCEEEEEEEcCCChhhHHHHHH-H--HHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcC
Confidence 58999999999999999986532 2 234444433 488888888765543222210 0222348
Q ss_pred CCCcCcEEEecCCCCcccc
Q 004888 201 GGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 201 ~~G~P~~vfl~pdG~~i~~ 219 (725)
+.++|+++|+|++|+++..
T Consensus 111 v~~~P~~~lid~~G~i~~~ 129 (152)
T 2lrt_A 111 VTNLPSVFLVNRNNELSAR 129 (152)
T ss_dssp CCSCSEEEEEETTTEEEEE
T ss_pred cccCceEEEECCCCeEEEe
Confidence 8899999999999998865
No 154
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}
Probab=98.43 E-value=2.2e-07 Score=84.63 Aligned_cols=77 Identities=12% Similarity=0.096 Sum_probs=59.8
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHh-cCcEEEEEcCCCCcch----HHHHHHHHHHhcCCC
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDV----DKVYMTYVQALYGGG 202 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln-~~FV~VkvD~ee~pd~----~~~y~~~~q~~~g~~ 202 (725)
.+-++.+.+++||++|+|++.||+.|+.|. |.+.++.+ .+.-.++||+++.+++ ...| |+.
T Consensus 14 ~e~f~~ii~~~~~vvi~khatwCgpc~~~~------~~~e~~~~~~~v~~~~vdVde~r~~Sn~IA~~~--------~V~ 79 (112)
T 3iv4_A 14 IDQFEQVIEENKYVFVLKHSETCPISANAY------DQFNKFLYERDMDGYYLIVQQERDLSDYIAKKT--------NVK 79 (112)
T ss_dssp HHHHHHHHHHCSEEEEEEECTTCHHHHHHH------HHHHHHHHHHTCCEEEEEGGGGHHHHHHHHHHH--------TCC
T ss_pred HHHHHHHHhcCCCEEEEEECCcCHhHHHHH------HHHHHHhccCCceEEEEEeecCchhhHHHHHHh--------CCc
Confidence 566777777799999999999999999997 34544443 3677788888887664 4443 888
Q ss_pred -CcCcEEEecCCCCcccc
Q 004888 203 -GWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 203 -G~P~~vfl~pdG~~i~~ 219 (725)
..|+.+++ .+|++++.
T Consensus 80 h~sPq~il~-k~G~~v~~ 96 (112)
T 3iv4_A 80 HESPQAFYF-VNGEMVWN 96 (112)
T ss_dssp CCSSEEEEE-ETTEEEEE
T ss_pred cCCCeEEEE-ECCEEEEE
Confidence 49999988 88999875
No 155
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=98.42 E-value=3.3e-07 Score=91.77 Aligned_cols=74 Identities=22% Similarity=0.293 Sum_probs=57.4
Q ss_pred HHHHHHHhhcCCcE-EEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCc
Q 004888 128 EEAFAEARKRDVPI-FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI-~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~ 206 (725)
++.++...+.++|+ +|.|+++||++|+.|... + .++++.. .++..++||.++.+++.+.| ++.|+|+
T Consensus 125 ~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~-~--~~~~~~~-~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt 192 (229)
T 2ywm_A 125 EKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVM-A--WDFALAN-DYITSKVIDASENQDLAEQF--------QVVGVPK 192 (229)
T ss_dssp HHHHHHHTTCCSCEEEEEEECTTCTTHHHHHHH-H--HHHHHHC-TTEEEEEEEGGGCHHHHHHT--------TCCSSSE
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCcchHHHHHH-H--HHHHHHC-CCeEEEEEECCCCHHHHHHc--------CCcccCE
Confidence 67777777788888 788999999999999732 2 2333333 36888999999888877665 8999999
Q ss_pred EEEecCCCCc
Q 004888 207 SVFLSPDLKP 216 (725)
Q Consensus 207 ~vfl~pdG~~ 216 (725)
++| +|++
T Consensus 193 ~~~---~G~~ 199 (229)
T 2ywm_A 193 IVI---NKGV 199 (229)
T ss_dssp EEE---GGGT
T ss_pred EEE---CCEE
Confidence 998 7884
No 156
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}
Probab=97.79 E-value=2.9e-08 Score=91.11 Aligned_cols=83 Identities=23% Similarity=0.153 Sum_probs=53.3
Q ss_pred hcCC-cEEEEEeccCChhhHhhhhhccCCHHHHHHH---hcCcEEEEEcCCCCcchHHHHHH-----------------H
Q 004888 136 KRDV-PIFLSIGYSTCHWCHVMEVESFEDEGVAKLL---NDWFVSIKVDREERPDVDKVYMT-----------------Y 194 (725)
Q Consensus 136 ~e~K-pI~l~~g~~wC~~C~~Me~e~f~d~eVa~~l---n~~FV~VkvD~ee~pd~~~~y~~-----------------~ 194 (725)
-.|| +|+|.|+++||+.|+.+.... .++.+.+ ..++..|.|+.++.++..+.|.+ .
T Consensus 23 ~~gk~~vll~F~a~wC~~C~~~~~~l---~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (143)
T 2lus_A 23 LKDKDIIGFYFSAHWCPPCRGFTPIL---ADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASN 99 (143)
Confidence 4578 999999999999999886432 2333444 23566666666544321111111 1
Q ss_pred HHHhcCCCCcCcEEEecCCCCcccccc
Q 004888 195 VQALYGGGGWPLSVFLSPDLKPLMGGT 221 (725)
Q Consensus 195 ~q~~~g~~G~P~~vfl~pdG~~i~~~t 221 (725)
+...+++.++|+++|++++|+++...+
T Consensus 100 ~~~~~~v~~~P~~~lid~~G~i~~~~~ 126 (143)
T 2lus_A 100 VTAKYGITGIPALVIVKKDGTLISMNG 126 (143)
Confidence 112247789999999999999987543
No 157
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=98.41 E-value=1.4e-07 Score=87.86 Aligned_cols=76 Identities=20% Similarity=0.137 Sum_probs=49.1
Q ss_pred CcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcC--CCCcchHHHHH-----------------HHHHHhc
Q 004888 139 VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDR--EERPDVDKVYM-----------------TYVQALY 199 (725)
Q Consensus 139 KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~--ee~pd~~~~y~-----------------~~~q~~~ 199 (725)
||++|.|+++||++|+.+.... .++.+.+ ++..|.|+. ++.++..+.|. ..+...+
T Consensus 31 k~vll~f~~~~C~~C~~~~~~l---~~l~~~~--~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 105 (154)
T 3ia1_A 31 KPAVIVFWASWCTVCKAEFPGL---HRVAEET--GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARF 105 (154)
T ss_dssp SSEEEEEECTTCHHHHHHHHHH---HHHHHHH--CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTS
T ss_pred CeEEEEEEcccChhHHHHHHHH---HHHHHHc--CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHh
Confidence 9999999999999999987432 2333333 445555555 33332222221 1112235
Q ss_pred CCCCcCcEEEecCCCCcccc
Q 004888 200 GGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 200 g~~G~P~~vfl~pdG~~i~~ 219 (725)
++.++|++++++++|+++..
T Consensus 106 ~v~~~P~~~lid~~G~i~~~ 125 (154)
T 3ia1_A 106 KVLGQPWTFVVDREGKVVAL 125 (154)
T ss_dssp SBCSSCEEEEECTTSEEEEE
T ss_pred CCCcccEEEEECCCCCEEEE
Confidence 88899999999999998864
No 158
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=98.40 E-value=6.4e-07 Score=82.78 Aligned_cols=77 Identities=6% Similarity=-0.067 Sum_probs=55.0
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc----CcEEEEEcCCCCcchHHHHHHH------------------
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND----WFVSIKVDREERPDVDKVYMTY------------------ 194 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~----~FV~VkvD~ee~pd~~~~y~~~------------------ 194 (725)
.||+|+|+|+++||+.|+.+. |.+.++.++ ++..|-|+.++.++..+.+.+.
T Consensus 31 ~gk~vll~F~a~wC~~C~~~~------~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 104 (143)
T 4fo5_A 31 LGRYTLLNFWAAYDAESRARN------VQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESE 104 (143)
T ss_dssp SCCEEEEEEECTTCHHHHHHH------HHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSH
T ss_pred CCCEEEEEEEcCcCHHHHHHH------HHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchH
Confidence 689999999999999999886 566655543 4777777777544322222111
Q ss_pred HHHhcCCCCcCcEEEecCCCCcccc
Q 004888 195 VQALYGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 195 ~q~~~g~~G~P~~vfl~pdG~~i~~ 219 (725)
+...+++.++|++++++++|+++..
T Consensus 105 ~~~~~~v~~~P~~~lid~~G~i~~~ 129 (143)
T 4fo5_A 105 LYKKYDLRKGFKNFLINDEGVIIAA 129 (143)
T ss_dssp HHHHTTGGGCCCEEEECTTSBEEEE
T ss_pred HHHHcCCCCCCcEEEECCCCEEEEc
Confidence 1123578899999999999998865
No 159
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Probab=98.40 E-value=3e-07 Score=100.04 Aligned_cols=76 Identities=13% Similarity=0.246 Sum_probs=59.4
Q ss_pred HHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHH------hcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCC
Q 004888 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLL------NDWFVSIKVDREERPDVDKVYMTYVQALYGGGG 203 (725)
Q Consensus 130 Al~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~l------n~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G 203 (725)
.++.+.+++|++||.|+++||+.|+.|..+ | .++++.+ +.+++.++||.++.+++.+.| ++.|
T Consensus 14 ~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~-~--~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~--------~v~~ 82 (382)
T 2r2j_A 14 NIDEILNNADVALVNFYADWCRFSQMLHPI-F--EEASDVIKEEFPNENQVVFARVDCDQHSDIAQRY--------RISK 82 (382)
T ss_dssp THHHHHHHCSEEEEEEECTTCHHHHHHHHH-H--HHHHHHHTTCC---CCEEEEEEETTTCHHHHHHT--------TCCE
T ss_pred HHHHHHhcCCeEEEEEECCCCHHHHHHHHH-H--HHHHHHHHhhcCCCCceEEEEEECCccHHHHHhc--------CCCc
Confidence 344455678999999999999999999854 3 3566666 335899999999888777665 8999
Q ss_pred cCcEEEecCCCCcc
Q 004888 204 WPLSVFLSPDLKPL 217 (725)
Q Consensus 204 ~P~~vfl~pdG~~i 217 (725)
+|+++|+ .+|+++
T Consensus 83 ~Pt~~~f-~~G~~~ 95 (382)
T 2r2j_A 83 YPTLKLF-RNGMMM 95 (382)
T ss_dssp ESEEEEE-ETTEEE
T ss_pred CCEEEEE-eCCcEe
Confidence 9999987 577765
No 160
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=98.40 E-value=2.5e-07 Score=99.27 Aligned_cols=78 Identities=19% Similarity=0.118 Sum_probs=63.2
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhh------ccCCHHHHHHHhc-CcEEEEEcCCCCcchHHHHHHHHHHhcC
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVE------SFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYG 200 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e------~f~d~eVa~~ln~-~FV~VkvD~ee~pd~~~~y~~~~q~~~g 200 (725)
++-++.+.+++++++|.|+|+||+ |+.|..+ +|+ ++++.+.. ++..++||.++.+++.+.| +
T Consensus 18 ~~~f~~~i~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~--~~a~~~~~~~v~~~~Vd~~~~~~l~~~~--------~ 86 (350)
T 1sji_A 18 EKNFKQVLKKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLE--LVAQVLEHKDIGFVMVDAKKEAKLAKKL--------G 86 (350)
T ss_dssp HHHHHHHHTTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHH--HHHHHGGGSSEEEEEEETTTTHHHHHHH--------T
T ss_pred HHHHHHHHhhCCeEEEEEECCCCc-chhhCchhhhhhHHHH--HHHHHHhhcCcEEEEEeCCCCHHHHHhc--------C
Confidence 566777878899999999999999 9766533 143 67777776 5999999999988877766 8
Q ss_pred CCCcCcEEEecCCCCcc
Q 004888 201 GGGWPLSVFLSPDLKPL 217 (725)
Q Consensus 201 ~~G~P~~vfl~pdG~~i 217 (725)
+.|+||++|+ .+|++.
T Consensus 87 v~~~Pt~~~~-~~g~~~ 102 (350)
T 1sji_A 87 FDEEGSLYVL-KGDRTI 102 (350)
T ss_dssp CCSTTEEEEE-ETTEEE
T ss_pred CCccceEEEE-ECCcEE
Confidence 9999999999 678743
No 161
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=98.38 E-value=2.7e-07 Score=102.92 Aligned_cols=70 Identities=20% Similarity=0.333 Sum_probs=56.0
Q ss_pred HhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc--CcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEec
Q 004888 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 211 (725)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~--~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~ 211 (725)
..+.+|+|+|.|+++||+.|+.|.... .++++.+.. +++.++||.+++ ++.+.| ++.|+|+++|+.
T Consensus 366 ~~~~~k~vlv~f~a~wC~~C~~~~p~~---~~l~~~~~~~~~v~~~~id~~~~-~~~~~~--------~v~~~Pt~~~~~ 433 (481)
T 3f8u_A 366 VNNENKDVLIEFYAPWCGHCKNLEPKY---KELGEKLSKDPNIVIAKMDATAN-DVPSPY--------EVRGFPTIYFSP 433 (481)
T ss_dssp HTCTTCEEEEEEECTTBHHHHHHHHHH---HHHHHHTTTCSSEEEEEEETTSS-CCCTTC--------CCCSSSEEEEEC
T ss_pred hhcCCCcEEEEEecCcChhHHHhhHHH---HHHHHHhccCCCEEEEEEECCch-hhHhhC--------CCcccCEEEEEe
Confidence 355699999999999999999998543 456666654 699999999876 554444 889999999998
Q ss_pred CCCC
Q 004888 212 PDLK 215 (725)
Q Consensus 212 pdG~ 215 (725)
++|+
T Consensus 434 ~~~~ 437 (481)
T 3f8u_A 434 ANKK 437 (481)
T ss_dssp TTCT
T ss_pred CCCe
Confidence 8776
No 162
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus}
Probab=98.36 E-value=6.9e-06 Score=94.11 Aligned_cols=185 Identities=12% Similarity=0.077 Sum_probs=130.3
Q ss_pred cHHHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCchhH-------------------HHHHHHHHHHHHHHH
Q 004888 334 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKML-------------------YDQGQLANVYLDAFS 394 (725)
Q Consensus 334 ~~~~~~~~~~TL~~ma~gGi~D~v~GGF~RYs~D~~W~vPHFEKML-------------------yDNA~Ll~~ya~Ay~ 394 (725)
-+++++-+.--++=|.+ +++. .|+||. .|.+.|.-+.-++.+ --|++++.+++.|++
T Consensus 189 ~~~lldE~rWg~D~llk--m~~~-~g~~y~-qVgd~W~~d~~~R~~~~~~~~~~~~~~~y~~~~~~~agl~aAALA~Asr 264 (586)
T 3h7l_A 189 RTRLIEEALFGADFLVR--MQNE-KGFFYM-TVFDKWSKDTAQREICAYETQLGHKFDDYQAGFRQGGGVAIAALAAASR 264 (586)
T ss_dssp HHHHHHHHHHHHHHHHH--TBCT-TSCBBC-EEECTTCCCGGGCEEEEEETTTTEEESCCBCCGGGTHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHh--cccC-CCeEEE-EecCCCCCCCCccccccccCCCCCCCcceecCCCCcHHHHHHHHHHHhc
Confidence 35888888888888887 6774 677775 444447532111100 138999999999999
Q ss_pred c-----cCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCccccccccccCcceEEechHHHHHHhhhhHHHHHHHhc
Q 004888 395 L-----TKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYY 469 (725)
Q Consensus 395 ~-----t~d~~y~~vA~~~~~fl~~~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~lg~~~~l~~~~y~ 469 (725)
+ ++.+.|++.|+++++|+.+++. .+ . .++.
T Consensus 265 vf~d~~~~a~~~L~aA~~a~~fa~~~~~----~y-~---~~g~------------------------------------- 299 (586)
T 3h7l_A 265 LGVHGEYDQQKYRNAAENGYWHLKEHNT----QY-L---NDGE------------------------------------- 299 (586)
T ss_dssp SSSCSSSCHHHHHHHHHHHHHHHHHHHH----HH-S---TTSC-------------------------------------
T ss_pred ccCCCCcChHHHHHHHHHHHHHHHhcCc----cc-c---CCCC-------------------------------------
Confidence 9 5556789999999999998642 12 1 0000
Q ss_pred ccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCCCCCCcchhhhcHHHH
Q 004888 470 LKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLV 549 (725)
Q Consensus 470 l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~e~~~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal~ 549 (725)
.| +.||. ++
T Consensus 300 ---~~-------------------------------------------------------------~~De~-------~~ 308 (586)
T 3h7l_A 300 ---EN-------------------------------------------------------------IIDEY-------CA 308 (586)
T ss_dssp ---CC-------------------------------------------------------------HHHHH-------HH
T ss_pred ---cc-------------------------------------------------------------chhHH-------HH
Confidence 00 12442 57
Q ss_pred HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHH
Q 004888 550 ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGL 629 (725)
Q Consensus 550 I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~leDyA~li~aL 629 (725)
+||.++++++++| +.|++.|+..++.+.+++++.+.++++++..++.....-.....+..+.+|
T Consensus 309 ~WAA~eLy~ATgd----------------~~YL~~a~~~a~~l~~~~~~~~~~g~~w~~~d~~~r~~~d~a~~gl~~iaL 372 (586)
T 3h7l_A 309 LLASVELFKATKE----------------TRYLEESRLWAQRLVARQMSDEQIQHFWSANQDGSRPYFHAAEAGLPTIAL 372 (586)
T ss_dssp HHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHTTEECCSSCSSEEBSSSSSSSBCCCTTTTTHHHHHH
T ss_pred HHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHHhccCCccCCCcCCCcccCCcccccccccHHHHHHH
Confidence 9999999999998 789999999999999999876667777764332211111111456778899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHH
Q 004888 630 LDLYEFGSGTKWLVWAIELQNTQDE 654 (725)
Q Consensus 630 L~LYe~Tgd~~yL~~A~~L~~~~~~ 654 (725)
+.+..++++..+.+.|+++.....+
T Consensus 373 l~l~~~~~d~~~~~~a~~~i~~~~d 397 (586)
T 3h7l_A 373 CEYLAIEDDSVQTESVKCIVNRACE 397 (586)
T ss_dssp HHHHHHCCSTTTTHHHHHHHHHHHH
T ss_pred HHhhhhcCChHHHHHHHHHHHHHhh
Confidence 9999999998888888877776655
No 163
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=98.32 E-value=8.3e-07 Score=99.74 Aligned_cols=76 Identities=17% Similarity=0.190 Sum_probs=61.3
Q ss_pred HHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcE
Q 004888 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (725)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~ 207 (725)
+-++.+.++++++||.|+++||+.|+.|..+ | .++++.++. ++..++||.++.+++.+.| |+.|+|++
T Consensus 22 ~~f~~~~~~~~~~lv~F~a~wC~~C~~~~p~-~--~~~a~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~ 90 (504)
T 2b5e_A 22 DSFNEYIQSHDLVLAEFFAPWCGHCKNMAPE-Y--VKAAETLVEKNITLAQIDCTENQDLCMEH--------NIPGFPSL 90 (504)
T ss_dssp TTHHHHHTTCSEEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTTTCEEEEEETTTCHHHHHHT--------TCCSSSEE
T ss_pred HHHHHHHhcCCeEEEEEECCCCHHHHHhHHH-H--HHHHHHhccCCeEEEEEECCCCHHHHHhc--------CCCcCCEE
Confidence 3455555779999999999999999999864 3 466777766 4999999999988877665 89999999
Q ss_pred EEecCCCCc
Q 004888 208 VFLSPDLKP 216 (725)
Q Consensus 208 vfl~pdG~~ 216 (725)
+|+.. |+.
T Consensus 91 ~~~~~-g~~ 98 (504)
T 2b5e_A 91 KIFKN-SDV 98 (504)
T ss_dssp EEEET-TCT
T ss_pred EEEeC-Ccc
Confidence 99964 664
No 164
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=98.31 E-value=1.2e-06 Score=84.82 Aligned_cols=81 Identities=9% Similarity=0.063 Sum_probs=51.9
Q ss_pred hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCC-------CcchHHHHHH--------------H
Q 004888 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE-------RPDVDKVYMT--------------Y 194 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee-------~pd~~~~y~~--------------~ 194 (725)
-.||+|+|.|+++||+.|+.+... + .++.+.+.+.+..|.|+.+. .++..+.|.+ .
T Consensus 31 ~~gk~vlv~F~a~~C~~C~~~~~~-l--~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~ 107 (188)
T 2cvb_A 31 FHEPLLAVVFMCNHCPYVKGSIGE-L--VALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQE 107 (188)
T ss_dssp CCSSEEEEEEECSSCHHHHTTHHH-H--HHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSH
T ss_pred hCCCEEEEEEECCCCccHHHHHHH-H--HHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcch
Confidence 358999999999999999976532 1 12333333336667776632 2222122211 0
Q ss_pred HHHhcCCCCcCcEEEecCCCCcccc
Q 004888 195 VQALYGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 195 ~q~~~g~~G~P~~vfl~pdG~~i~~ 219 (725)
+...+++.++|+++|++++|++++.
T Consensus 108 ~~~~~~v~~~P~~~lid~~G~i~~~ 132 (188)
T 2cvb_A 108 VAKAYRALRTPEVFLFDERRLLRYH 132 (188)
T ss_dssp HHHHTTCCEESEEEEECTTCBEEEE
T ss_pred HHHHcCCCCCCeEEEECCCCcEEEE
Confidence 1123488899999999999998876
No 165
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=98.31 E-value=2.1e-06 Score=82.85 Aligned_cols=81 Identities=16% Similarity=0.238 Sum_probs=52.5
Q ss_pred hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHh-cCcEEEEEcCCCC-cchHHHHHHHHHH---------------h
Q 004888 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREER-PDVDKVYMTYVQA---------------L 198 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln-~~FV~VkvD~ee~-pd~~~~y~~~~q~---------------~ 198 (725)
-.||+++|.|+++||+.|+.+.... .++.+.+. +++..|.|+.+.. ++..+.|.+.... .
T Consensus 58 ~~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 134 (186)
T 1jfu_A 58 FRGKTLLVNLWATWCVPCRKEMPAL---DELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQD 134 (186)
T ss_dssp GTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHH
T ss_pred cCCCEEEEEEEeCCCHhHHHHHHHH---HHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHH
Confidence 3689999999999999999886432 24455554 4666777766543 2322333221100 0
Q ss_pred cCC----CCcCcEEEecCCCCcccc
Q 004888 199 YGG----GGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 199 ~g~----~G~P~~vfl~pdG~~i~~ 219 (725)
+++ .++|+++|+|++|+++..
T Consensus 135 ~~~~~~~~~~P~~~lid~~G~i~~~ 159 (186)
T 1jfu_A 135 LKAIGRALGMPTSVLVDPQGCEIAT 159 (186)
T ss_dssp HHTTTCCSSSSEEEEECTTSBEEEE
T ss_pred hccccccCCCCEEEEECCCCCEEEE
Confidence 111 389999999999998864
No 166
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*
Probab=98.29 E-value=1e-06 Score=86.74 Aligned_cols=71 Identities=23% Similarity=0.274 Sum_probs=57.5
Q ss_pred hcCCcEEEEEec-------cCChhhHhhhhhccCCHHHHHHHh-----cCcEEEEEcCCCCcchHHHHHHHHHHhcCCCC
Q 004888 136 KRDVPIFLSIGY-------STCHWCHVMEVESFEDEGVAKLLN-----DWFVSIKVDREERPDVDKVYMTYVQALYGGGG 203 (725)
Q Consensus 136 ~e~KpI~l~~g~-------~wC~~C~~Me~e~f~d~eVa~~ln-----~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G 203 (725)
..+.||+|+|+| .||+.|+.|.. +| .+|++.+. ...+.+|||+++.|++.+.| |+.+
T Consensus 35 ~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P-~~--e~lA~~~~~~~~~~~v~f~kvD~d~~~~la~~~--------~I~s 103 (178)
T 3ga4_A 35 VPGYFNILYITMRGTNSNGMSCQLCHDFEK-TY--HAVADVIRSQAPQSLNLFFTVDVNEVPQLVKDL--------KLQN 103 (178)
T ss_dssp CTTCEEEEEEECCSBCTTSCBCHHHHHHHH-HH--HHHHHHHHHHCTTCCEEEEEEETTTCHHHHHHT--------TCCS
T ss_pred cCCCcEEEEEeCCCCCCCCCCChhHHHHHH-HH--HHHHHHhhhccCCCCEEEEEEECccCHHHHHHc--------CCCC
Confidence 457799999999 49999999973 33 25555554 56889999999999988776 8999
Q ss_pred cCcEEEecCCCCcc
Q 004888 204 WPLSVFLSPDLKPL 217 (725)
Q Consensus 204 ~P~~vfl~pdG~~i 217 (725)
.|+++++-+.+.+-
T Consensus 104 iPtl~~F~~g~~~~ 117 (178)
T 3ga4_A 104 VPHLVVYPPAESNK 117 (178)
T ss_dssp SCEEEEECCCCGGG
T ss_pred CCEEEEEcCCCCCC
Confidence 99999998877654
No 167
>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A
Probab=98.29 E-value=8.4e-07 Score=77.07 Aligned_cols=58 Identities=16% Similarity=0.140 Sum_probs=44.8
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCccc
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 218 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~ 218 (725)
++.|+++||++|+.|+ .+.+.+...+ .++||+++.|++.+.| |+. +|+.++ .+|+++.
T Consensus 3 vv~f~a~~C~~C~~~~-------~~L~~~~~~~-~~~vdid~~~~l~~~~--------g~~-vPtl~~--~~G~~v~ 60 (87)
T 1ttz_A 3 LTLYQRDDCHLCDQAV-------EALAQARAGA-FFSVFIDDDAALESAY--------GLR-VPVLRD--PMGRELD 60 (87)
T ss_dssp EEEEECSSCHHHHHHH-------HHHHHTTCCC-EEEEECTTCHHHHHHH--------TTT-CSEEEC--TTCCEEE
T ss_pred EEEEECCCCchHHHHH-------HHHHHHHHhh-eEEEECCCCHHHHHHh--------CCC-cCeEEE--ECCEEEe
Confidence 6789999999999997 3334444443 4789999999877666 666 999887 7899885
No 168
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A
Probab=98.29 E-value=9.4e-07 Score=78.90 Aligned_cols=76 Identities=14% Similarity=0.309 Sum_probs=48.7
Q ss_pred HHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEE
Q 004888 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (725)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~v 208 (725)
+.++...+ +++|++ |+++||++|+.|.. +.+.+...|..|.||.++... . ....+...+|+.++|++
T Consensus 11 ~~~~~~~~-~~~vv~-f~a~~C~~C~~~~~-------~l~~~~~~~~~v~v~~~~~~~--~-~~~~l~~~~~v~~~Pt~- 77 (116)
T 2e7p_A 11 KKAKELAS-SAPVVV-FSKTYCGYCNRVKQ-------LLTQVGASYKVVELDELSDGS--Q-LQSALAHWTGRGTVPNV- 77 (116)
T ss_dssp HHHHHHHT-SSSEEE-EECTTCHHHHHHHH-------HHHHHTCCCEEEEGGGSTTHH--H-HHHHHHHHHSCCSSCEE-
T ss_pred HHHHHHHc-CCCEEE-EECCCChhHHHHHH-------HHHHcCCCeEEEEccCCCChH--H-HHHHHHHHhCCCCcCEE-
Confidence 34444443 567877 99999999999873 333455678888888765411 1 11111222488999998
Q ss_pred EecCCCCcccc
Q 004888 209 FLSPDLKPLMG 219 (725)
Q Consensus 209 fl~pdG~~i~~ 219 (725)
|. +|+.+.+
T Consensus 78 ~~--~g~~v~~ 86 (116)
T 2e7p_A 78 FI--GGKQIGG 86 (116)
T ss_dssp EE--TTEEEEC
T ss_pred EE--CCEEECC
Confidence 55 6777654
No 169
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=98.28 E-value=1.9e-06 Score=83.70 Aligned_cols=80 Identities=14% Similarity=0.148 Sum_probs=50.9
Q ss_pred cCC-cEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCC-------CcchHHHHHHH-------------
Q 004888 137 RDV-PIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREE-------RPDVDKVYMTY------------- 194 (725)
Q Consensus 137 e~K-pI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee-------~pd~~~~y~~~------------- 194 (725)
.+| ||+|.|+++||+.|+.+... + .++.+.+.+ ++..|.|+.+. .++..+.|.+.
T Consensus 44 ~gk~~vlv~F~a~~C~~C~~~~~~-l--~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~ 120 (196)
T 2ywi_A 44 KSDAATVIMFICNHCPFVKHVQHE-L--VRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQ 120 (196)
T ss_dssp CCSSEEEEEECCSSCHHHHHHHHH-H--HHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSC
T ss_pred CCCCeEEEEEeCCCCccHHHHHHH-H--HHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCch
Confidence 577 59999999999999987632 2 123333332 47777777642 22221222110
Q ss_pred -HHHhcCCCCcCcEEEecCCCCcccc
Q 004888 195 -VQALYGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 195 -~q~~~g~~G~P~~vfl~pdG~~i~~ 219 (725)
+...+++.++|+++|+|++|++++.
T Consensus 121 ~~~~~~~v~~~P~~~lid~~G~i~~~ 146 (196)
T 2ywi_A 121 EVAKAYDAACTPDFYIFDRDLKCVYR 146 (196)
T ss_dssp HHHHHHTCCEESEEEEEETTCBEEEE
T ss_pred HHHHHhCCCCCCeEEEEcCCCeEEEc
Confidence 1112478899999999999999865
No 170
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=98.26 E-value=5.3e-07 Score=93.04 Aligned_cols=69 Identities=10% Similarity=0.073 Sum_probs=51.5
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCc
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~ 216 (725)
.+|+|+|.|+++||+.|+.|... | .++++... ++..++||.++ +++...| ++.++||++|+. +|++
T Consensus 132 ~~k~VvV~Fya~wC~~Ck~l~p~-l--~~La~~~~-~v~f~kVd~d~-~~l~~~~--------~I~~~PTll~~~-~G~~ 197 (245)
T 1a0r_P 132 KITTIVVHIYEDGIKGCDALNSS-L--ICLAAEYP-MVKFCKIKASN-TGAGDRF--------SSDVLPTLLVYK-GGEL 197 (245)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHH-H--HHHHHHCT-TSEEEEEEHHH-HCCTTSS--------CTTTCSEEEEEE-TTEE
T ss_pred CCCEEEEEEECCCChHHHHHHHH-H--HHHHHHCC-CCEEEEEeCCc-HHHHHHC--------CCCCCCEEEEEE-CCEE
Confidence 48999999999999999999842 2 23443332 48889999876 5444333 888999999885 8988
Q ss_pred ccc
Q 004888 217 LMG 219 (725)
Q Consensus 217 i~~ 219 (725)
+..
T Consensus 198 v~~ 200 (245)
T 1a0r_P 198 LSN 200 (245)
T ss_dssp EEE
T ss_pred EEE
Confidence 753
No 171
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=98.23 E-value=1.3e-06 Score=98.24 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=53.8
Q ss_pred hhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHh---cCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEec
Q 004888 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN---DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 211 (725)
Q Consensus 135 k~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln---~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~ 211 (725)
...+|||+|.|+++||+.|+.|.... .++++.+. .+++.++||.+.++.. . | ++.|+||++|+
T Consensus 373 ~~~~k~vlv~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~v~~~~vd~~~~~~~-~-~--------~v~~~Pt~~~~- 438 (504)
T 2b5e_A 373 NDPKKDVLVLYYAPWCGHCKRLAPTY---QELADTYANATSDVLIAKLDHTENDVR-G-V--------VIEGYPTIVLY- 438 (504)
T ss_dssp HCTTCCEEEEEECTTCHHHHHHHHHH---HHHHHHHHHHCSSCEEEEEEGGGCCCS-S-C--------CCSSSSEEEEE-
T ss_pred ccCCCCEEEEEECCCChhHHHHhHHH---HHHHHHhhccCCcEEEEEecCCccccc-c-C--------CceecCeEEEE-
Confidence 56799999999999999999998543 24555553 3799999999876543 2 4 78999999999
Q ss_pred CCCCc
Q 004888 212 PDLKP 216 (725)
Q Consensus 212 pdG~~ 216 (725)
++|+.
T Consensus 439 ~~G~~ 443 (504)
T 2b5e_A 439 PGGKK 443 (504)
T ss_dssp CCTTS
T ss_pred eCCce
Confidence 78875
No 172
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=98.21 E-value=3.7e-06 Score=79.59 Aligned_cols=100 Identities=13% Similarity=0.067 Sum_probs=59.5
Q ss_pred cCCcEEEEEeccCChh-hHhhhhhccCCHHHHHHHh-----cCcEEEEEcCCC---CcchHHHHHH--------------
Q 004888 137 RDVPIFLSIGYSTCHW-CHVMEVESFEDEGVAKLLN-----DWFVSIKVDREE---RPDVDKVYMT-------------- 193 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~-C~~Me~e~f~d~eVa~~ln-----~~FV~VkvD~ee---~pd~~~~y~~-------------- 193 (725)
.||+|+|+|+++||+. |+.+... + .++.+.+. +++..|.|..+. .++..+.|.+
T Consensus 25 ~gk~vll~F~~~~C~~~C~~~~~~-l--~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~ 101 (171)
T 2rli_A 25 RGQWVLMYFGFTHCPDICPDELEK-L--VQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTK 101 (171)
T ss_dssp TTSEEEEEEECTTCSSSHHHHHHH-H--HHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHH
T ss_pred CCCEEEEEEEcCCCCchhHHHHHH-H--HHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHH
Confidence 5899999999999998 9987532 2 23444453 356666665542 2332222321
Q ss_pred ---HHHHhcCCCCcC---------------cEEEecCCCCccccc-cccCCCCCCCcchHHHHHHHHHHHH
Q 004888 194 ---YVQALYGGGGWP---------------LSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKVKDAW 245 (725)
Q Consensus 194 ---~~q~~~g~~G~P---------------~~vfl~pdG~~i~~~-tY~p~~~~~~~~~F~~~L~~i~~~~ 245 (725)
.+...+|+.+.| +++++|++|+++... +..+ ...+.+.|+++.+.+
T Consensus 102 ~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~------~~~l~~~l~~ll~~~ 166 (171)
T 2rli_A 102 QVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRS------AEQISDSVRRHMAAF 166 (171)
T ss_dssp HHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCC------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCC------HHHHHHHHHHHHHHH
Confidence 111225777777 899999999998652 1122 224555555555444
No 173
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=98.20 E-value=2.4e-06 Score=97.14 Aligned_cols=72 Identities=14% Similarity=0.094 Sum_probs=57.2
Q ss_pred hhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc---CcEEEEEcCCC--CcchHHHHHHHHHHhcCCCCcCcEEE
Q 004888 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREE--RPDVDKVYMTYVQALYGGGGWPLSVF 209 (725)
Q Consensus 135 k~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~---~FV~VkvD~ee--~pd~~~~y~~~~q~~~g~~G~P~~vf 209 (725)
.+.+|+|+|+|+++||+.|+.|.... .++++.+.. .+..++||.++ .+++.+.| ++.|+|+++|
T Consensus 27 ~~~~k~vlV~FyA~WC~pCk~~~P~l---~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~--------~V~~~PTl~~ 95 (519)
T 3t58_A 27 LGSSSAWAVEFFASWCGHAIAFAPTW---KELANDVKDWRPALNLAVLDCAEETNSAVCREF--------NIAGFPTVRF 95 (519)
T ss_dssp SSCSSEEEEEEECTTSHHHHHHHHHH---HHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHT--------TCCSBSEEEE
T ss_pred HhCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhhCcCCcEEEEEEECCccccHHHHHHc--------CCcccCEEEE
Confidence 46689999999999999999998543 466667765 69999999854 56665554 8999999999
Q ss_pred ecC---CCCcc
Q 004888 210 LSP---DLKPL 217 (725)
Q Consensus 210 l~p---dG~~i 217 (725)
+++ +|+++
T Consensus 96 f~~g~~~G~~~ 106 (519)
T 3t58_A 96 FQAFTKNGSGA 106 (519)
T ss_dssp ECTTCCSCCCE
T ss_pred EcCcccCCCce
Confidence 998 66644
No 174
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=98.19 E-value=2.6e-06 Score=87.16 Aligned_cols=77 Identities=16% Similarity=0.117 Sum_probs=55.7
Q ss_pred HHHHHHHhhc-CCcEEEEEeccCChhhHhhhhhccCCHHHHHHHh----cCcEEEEEcCCCCcchHHHHHHHHHHhcCCC
Q 004888 128 EEAFAEARKR-DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN----DWFVSIKVDREERPDVDKVYMTYVQALYGGG 202 (725)
Q Consensus 128 ~eAl~~Ak~e-~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln----~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~ 202 (725)
++.++..++. ++++++.|+++||++|+.+... ++ +++.... .++..++||.++.+++.+.| ++.
T Consensus 127 ~~~~~~~~~~~~~~~vv~F~a~wC~~C~~~~p~-l~--~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~--------~V~ 195 (243)
T 2hls_A 127 DATKEALKSLKGRVHIETIITPSCPYCPYAVLL-AH--MFAYEAWKQGNPVILSEAVEAYENPDIADKY--------GVM 195 (243)
T ss_dssp HHHHHHHHHCCSCEEEEEEECSSCSSHHHHHHH-HH--HHHHHHHHTTCCCEEEEEEETTTCHHHHHHT--------TCC
T ss_pred HHHHHHHHHcCCCcEEEEEECCCCCCcHHHHHH-HH--HHHHHcccccCCcEEEEEEECccCHHHHHHc--------CCe
Confidence 4555555544 5566889999999999998742 22 3343331 46888999999988876655 889
Q ss_pred CcCcEEEecCCCCccc
Q 004888 203 GWPLSVFLSPDLKPLM 218 (725)
Q Consensus 203 G~P~~vfl~pdG~~i~ 218 (725)
|+|+++| +|++++
T Consensus 196 ~vPt~~i---~G~~~~ 208 (243)
T 2hls_A 196 SVPSIAI---NGYLVF 208 (243)
T ss_dssp SSSEEEE---TTEEEE
T ss_pred eeCeEEE---CCEEEE
Confidence 9999988 788653
No 175
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*
Probab=98.19 E-value=1.4e-06 Score=97.76 Aligned_cols=69 Identities=16% Similarity=0.093 Sum_probs=55.2
Q ss_pred hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc--------CcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcE
Q 004888 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--------WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~--------~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~ 207 (725)
..+|||+|+|+++||+.|+.|.... .++++.+.. .++.++||.++.+++.+.| ++.++|++
T Consensus 40 ~~~k~VlV~FyA~WC~pCk~~~P~l---~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y--------~V~~~PTl 108 (470)
T 3qcp_A 40 APLCPWIVLFYNDGCGACRRYASTF---SKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKY--------DINFVPRL 108 (470)
T ss_dssp GGGSCEEEEEECTTCHHHHHHHHHH---HHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHT--------TCCSSCEE
T ss_pred CCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHc--------CCCccCeE
Confidence 4579999999999999999998432 344444431 4899999999988877665 89999999
Q ss_pred EEecCCCC
Q 004888 208 VFLSPDLK 215 (725)
Q Consensus 208 vfl~pdG~ 215 (725)
+|++++|.
T Consensus 109 ilf~~gg~ 116 (470)
T 3qcp_A 109 FFFYPRDS 116 (470)
T ss_dssp EEEEESSC
T ss_pred EEEECCCc
Confidence 99987764
No 176
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}
Probab=98.16 E-value=2.6e-06 Score=92.34 Aligned_cols=83 Identities=14% Similarity=0.102 Sum_probs=55.5
Q ss_pred HhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCC-----CcchHHHHHH--------------
Q 004888 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREE-----RPDVDKVYMT-------------- 193 (725)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee-----~pd~~~~y~~-------------- 193 (725)
+.-.+|+|+|+|+++||+.|+.|.... .++.+.+.+ +++.|.|+.++ .++..+.|.+
T Consensus 78 sdl~GK~vLl~F~atwC~~C~~~~p~L---~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~ 154 (352)
T 2hyx_A 78 KSLRGKVVLIDFWAYSCINCQRAIPHV---VGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNY 154 (352)
T ss_dssp GGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTS
T ss_pred HHhCCCEEEEEEECCCChhHHHHHHHH---HHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcH
Confidence 334689999999999999999886422 234444443 58888887653 2222222211
Q ss_pred HHHHhcCCCCcCcEEEecCCCCcccc
Q 004888 194 YVQALYGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 194 ~~q~~~g~~G~P~~vfl~pdG~~i~~ 219 (725)
.+...+++.++|+++|+|++|+++..
T Consensus 155 ~l~~~ygV~~~Pt~~lID~~G~Iv~~ 180 (352)
T 2hyx_A 155 ATWTNYRNRYWPAEYLIDATGTVRHI 180 (352)
T ss_dssp HHHHHTTCCEESEEEEECTTSBEEEE
T ss_pred HHHHHcCCCccCEEEEEeCCCeEEEE
Confidence 01122588899999999999999865
No 177
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=98.15 E-value=1.8e-06 Score=96.31 Aligned_cols=75 Identities=19% Similarity=0.196 Sum_probs=60.4
Q ss_pred HHHHhhcC---CcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcE
Q 004888 131 FAEARKRD---VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (725)
Q Consensus 131 l~~Ak~e~---KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~ 207 (725)
++.+-+++ ++++|.|+++||+.|+.|..+. .++++.+...+..++||.++.+++.+.| |+.|+|++
T Consensus 11 f~~~i~~~~~~~~~lv~F~a~wC~~C~~~~p~~---~~~a~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Ptl 79 (481)
T 3f8u_A 11 FESRISDTGSAGLMLVEFFAPWCGHAKRLAPEY---EAAATRLKGIVPLAKVDCTANTNTCNKY--------GVSGYPTL 79 (481)
T ss_dssp HHHHTTCCSSSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCCEEEEETTTCHHHHHHT--------TCCEESEE
T ss_pred HHHHHHhCCCCCeEEEEEECCCCHHHHHhHHHH---HHHHHHhcCceEEEEEECCCCHHHHHhc--------CCCCCCEE
Confidence 44444555 9999999999999999998643 5677777767889999999988887665 89999999
Q ss_pred EEecCCCCcc
Q 004888 208 VFLSPDLKPL 217 (725)
Q Consensus 208 vfl~pdG~~i 217 (725)
+|+ .+|+.+
T Consensus 80 ~~~-~~g~~~ 88 (481)
T 3f8u_A 80 KIF-RDGEEA 88 (481)
T ss_dssp EEE-ETTEEE
T ss_pred EEE-eCCcee
Confidence 988 567654
No 178
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=98.14 E-value=6.8e-06 Score=80.17 Aligned_cols=80 Identities=13% Similarity=0.074 Sum_probs=51.1
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCC-------CcchHHHHH-HHH------------
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREE-------RPDVDKVYM-TYV------------ 195 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee-------~pd~~~~y~-~~~------------ 195 (725)
.||+|+|+|+++||+.|+.+... + .++.+.+.+ ++..|.|+.++ .++..+.|. +..
T Consensus 47 ~Gk~vll~F~atwC~~C~~~~~~-l--~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~ 123 (190)
T 2vup_A 47 KGSPLLIYNVASKCGYTKGGYET-A--TTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINV 123 (190)
T ss_dssp TTSCEEEEEECSSSTTHHHHHHH-H--HHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBS
T ss_pred CCCEEEEEEecCCCCccHHHHHH-H--HHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeeccc
Confidence 58999999999999999775421 2 234444433 47777776652 222222332 110
Q ss_pred -------------HHhcCCCCcC------cEEEecCCCCcccc
Q 004888 196 -------------QALYGGGGWP------LSVFLSPDLKPLMG 219 (725)
Q Consensus 196 -------------q~~~g~~G~P------~~vfl~pdG~~i~~ 219 (725)
...+++.|+| ++++++++|+++..
T Consensus 124 ~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~ 166 (190)
T 2vup_A 124 NGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVER 166 (190)
T ss_dssp SSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEE
T ss_pred CcccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEE
Confidence 0113667889 99999999999865
No 179
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=98.14 E-value=2.6e-06 Score=100.81 Aligned_cols=79 Identities=13% Similarity=0.058 Sum_probs=64.4
Q ss_pred HHHH-HHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCc
Q 004888 128 EEAF-AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (725)
Q Consensus 128 ~eAl-~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~ 206 (725)
.+.+ +...+.+||++|.|+++||+.|+.|.... .++++.+..+++.++||.++.+++.+.| |+.|+|+
T Consensus 664 ~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~---~~la~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt 732 (780)
T 3apo_A 664 PQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEF---ELLARMIKGKVRAGKVDCQAYPQTCQKA--------GIKAYPS 732 (780)
T ss_dssp HHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTCEEEEEETTTCHHHHHHT--------TCCSSSE
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCceEEEEECCCCHHHHHhc--------CCCcCCE
Confidence 4555 44677899999999999999999987533 4667767668999999999988776655 8899999
Q ss_pred EEEecCCCCccc
Q 004888 207 SVFLSPDLKPLM 218 (725)
Q Consensus 207 ~vfl~pdG~~i~ 218 (725)
++|+ ++|+.+.
T Consensus 733 ~~~~-~~g~~~~ 743 (780)
T 3apo_A 733 VKLY-QYERAKK 743 (780)
T ss_dssp EEEE-EEETTTT
T ss_pred EEEE-cCCCccc
Confidence 9999 8888774
No 180
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=98.12 E-value=8.4e-06 Score=77.15 Aligned_cols=79 Identities=16% Similarity=0.077 Sum_probs=51.8
Q ss_pred cCCc-EEEEEe-ccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCcchHHHHHH--------------HHHHhc
Q 004888 137 RDVP-IFLSIG-YSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMT--------------YVQALY 199 (725)
Q Consensus 137 e~Kp-I~l~~g-~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~pd~~~~y~~--------------~~q~~~ 199 (725)
.||+ |+|.|+ ++||+.|+.+.... .++.+.+.+ ++..|-|+.+. ++..+.|.+ .+...+
T Consensus 27 ~gk~~vvl~F~~a~~C~~C~~~~~~l---~~~~~~~~~~~v~vv~vs~d~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 102 (161)
T 3drn_A 27 IGKHNIVLYFYPKDDTPGSTREASAF---RDNWDLLKDYDVVVIGVSSDD-INSHKRFKEKYKLPFILVSDPDKKIRELY 102 (161)
T ss_dssp TTTSEEEEEECSCTTCHHHHHHHHHH---HHTHHHHHTTCEEEEEEESCC-HHHHHHHHHHTTCCSEEEECTTSHHHHHT
T ss_pred cCCCCEEEEEEcCCCCCchHHHHHHH---HHHHHHHHHcCCEEEEEeCCC-HHHHHHHHHHhCCCceEEECCcHHHHHHc
Confidence 5787 999999 99999999876422 233334433 47777777653 332222221 111224
Q ss_pred CCCC----cCcEEEecCCCCcccc
Q 004888 200 GGGG----WPLSVFLSPDLKPLMG 219 (725)
Q Consensus 200 g~~G----~P~~vfl~pdG~~i~~ 219 (725)
|+.| +|+++++|++|+++..
T Consensus 103 ~v~~~~~~~P~~~lid~~G~i~~~ 126 (161)
T 3drn_A 103 GAKGFILPARITFVIDKKGIIRHI 126 (161)
T ss_dssp TCCCSSSCCCEEEEECTTSBEEEE
T ss_pred CCCCcCcccceEEEECCCCEEEEE
Confidence 7778 9999999999999865
No 181
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=98.12 E-value=2.7e-06 Score=92.16 Aligned_cols=78 Identities=15% Similarity=-0.061 Sum_probs=57.8
Q ss_pred HHHHhhcCCcEEEEEeccCChhhHhhhhhcc---CCHHHHHHHhc-CcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCc
Q 004888 131 FAEARKRDVPIFLSIGYSTCHWCHVMEVESF---EDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (725)
Q Consensus 131 l~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f---~d~eVa~~ln~-~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~ 206 (725)
++.+-+++++|+|.|+|+||+.|..+.+-.+ .-.++++.+.. ++..++||.++.+++.+.| |+.|+||
T Consensus 23 f~~~i~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~l~~~~--------~V~~~PT 94 (367)
T 3us3_A 23 YKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKL--------GLTEEDS 94 (367)
T ss_dssp HHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHHHHHHH--------TCCSTTE
T ss_pred HHHHHhhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHHHHHHc--------CCCcCce
Confidence 4444466899999999999998744331111 11356666654 5899999999999887776 8999999
Q ss_pred EEEecCCCCcc
Q 004888 207 SVFLSPDLKPL 217 (725)
Q Consensus 207 ~vfl~pdG~~i 217 (725)
++|+. +|+++
T Consensus 95 l~~f~-~G~~~ 104 (367)
T 3us3_A 95 IYVFK-EDEVI 104 (367)
T ss_dssp EEEEE-TTEEE
T ss_pred EEEEE-CCcEE
Confidence 99997 68775
No 182
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=98.11 E-value=4.8e-06 Score=78.09 Aligned_cols=80 Identities=14% Similarity=0.153 Sum_probs=51.4
Q ss_pred cCCcEEEEEeccCChh-hHhhhhhccCCHHHHHHHhc-----CcEEEEEcCCC---CcchHHHHHH--------------
Q 004888 137 RDVPIFLSIGYSTCHW-CHVMEVESFEDEGVAKLLND-----WFVSIKVDREE---RPDVDKVYMT-------------- 193 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~-C~~Me~e~f~d~eVa~~ln~-----~FV~VkvD~ee---~pd~~~~y~~-------------- 193 (725)
.||+++|+|+++||+. |+.+... + .++.+.+.+ ++..|-|..+. .|+..+.|.+
T Consensus 22 ~gk~vll~f~~~~C~~~C~~~~~~-l--~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d 98 (164)
T 2ggt_A 22 LGQWLLIYFGFTHCPDVCPEELEK-M--IQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTRE 98 (164)
T ss_dssp TTCEEEEEEECTTCSSHHHHHHHH-H--HHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHH
T ss_pred CCCEEEEEEEeCCCCchhHHHHHH-H--HHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHH
Confidence 5899999999999998 9987632 2 234444543 55555555543 2332222321
Q ss_pred ---HHHHhcCCCCcC---------------cEEEecCCCCcccc
Q 004888 194 ---YVQALYGGGGWP---------------LSVFLSPDLKPLMG 219 (725)
Q Consensus 194 ---~~q~~~g~~G~P---------------~~vfl~pdG~~i~~ 219 (725)
.+...+|+.+.| ++++++++|+++..
T Consensus 99 ~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 142 (164)
T 2ggt_A 99 EVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDY 142 (164)
T ss_dssp HHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEE
T ss_pred HHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEE
Confidence 112235777888 89999999999864
No 183
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=98.11 E-value=7.7e-06 Score=81.94 Aligned_cols=81 Identities=12% Similarity=0.217 Sum_probs=52.1
Q ss_pred cCCc-EEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCC-------CCcchHHHHHH--------------
Q 004888 137 RDVP-IFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDRE-------ERPDVDKVYMT-------------- 193 (725)
Q Consensus 137 e~Kp-I~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~e-------e~pd~~~~y~~-------------- 193 (725)
.||+ |+|.|+++||+.|+.+... + .++.+.+.+ ++..|.|+.+ +.++..+.|.+
T Consensus 57 ~gk~~vll~F~a~~C~~C~~~~~~-l--~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~ 133 (218)
T 3u5r_E 57 KDSPALLVAFISNRCPFVVLIREA-L--AKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQ 133 (218)
T ss_dssp TTCSEEEEEECCSSCHHHHTTHHH-H--HHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTC
T ss_pred CCCCeEEEEEECCCCccHHHHHHH-H--HHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCcc
Confidence 5785 9999999999999987632 1 234444433 3777777764 22222222211
Q ss_pred HHHHhcCCCCcCcEEEecCCCCccccc
Q 004888 194 YVQALYGGGGWPLSVFLSPDLKPLMGG 220 (725)
Q Consensus 194 ~~q~~~g~~G~P~~vfl~pdG~~i~~~ 220 (725)
.+...+++.++|+++|+|++|++++.+
T Consensus 134 ~~~~~~~v~~~P~~~liD~~G~i~~~g 160 (218)
T 3u5r_E 134 SVAKAYGAACTPDFFLYDRERRLVYHG 160 (218)
T ss_dssp HHHHHHTCCEESEEEEECTTCBEEEEE
T ss_pred HHHHHcCCCCCCeEEEECCCCcEEEec
Confidence 011224888999999999999998754
No 184
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Probab=98.09 E-value=1e-05 Score=76.24 Aligned_cols=80 Identities=9% Similarity=0.052 Sum_probs=49.7
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCC-------CcchHHHHHH-HH------------
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREE-------RPDVDKVYMT-YV------------ 195 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee-------~pd~~~~y~~-~~------------ 195 (725)
.||+|+|+|+++||+.|+.+.... .++.+.+.+ ++..|.|+.+. .++..+.|.+ ..
T Consensus 31 ~gk~vll~f~a~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 107 (170)
T 2p5q_A 31 KGKVLLIVNVASKCGMTNSNYAEM---NQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDV 107 (170)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHH---HHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBS
T ss_pred CCCEEEEEEEeccCCccHHHHHHH---HHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeecc
Confidence 589999999999999999865321 234444433 47777776642 2222222322 10
Q ss_pred ---------H----HhcCC--CCcC---cEEEecCCCCcccc
Q 004888 196 ---------Q----ALYGG--GGWP---LSVFLSPDLKPLMG 219 (725)
Q Consensus 196 ---------q----~~~g~--~G~P---~~vfl~pdG~~i~~ 219 (725)
. ..+|+ .++| +++++|++|+++..
T Consensus 108 ~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~ 149 (170)
T 2p5q_A 108 NGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDR 149 (170)
T ss_dssp SSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEE
T ss_pred CCCchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEe
Confidence 0 00133 5678 99999999999865
No 185
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=98.07 E-value=5.1e-06 Score=79.39 Aligned_cols=79 Identities=13% Similarity=0.047 Sum_probs=47.7
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCC-------CCcchHHHHH----------------
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDRE-------ERPDVDKVYM---------------- 192 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~e-------e~pd~~~~y~---------------- 192 (725)
.||+|+|+|+++||+.|+ +.. .+ .++.+.+.+ ++..|.|+.+ +.++..+.|.
T Consensus 31 ~Gk~vll~F~a~wC~~C~-~~~-~l--~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~ 106 (171)
T 3cmi_A 31 KGKVVLIVNVASKCGFTP-QYK-EL--EALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDV 106 (171)
T ss_dssp TTCEEEEEEEESSSCCHH-HHH-HH--HHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBS
T ss_pred CCCEEEEEEEecCCCcch-hHH-HH--HHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccC
Confidence 589999999999999999 432 22 234444433 4777777542 1122112222
Q ss_pred ----------HHHHHhcCCCCcC------cEEEecCCCCcccc
Q 004888 193 ----------TYVQALYGGGGWP------LSVFLSPDLKPLMG 219 (725)
Q Consensus 193 ----------~~~q~~~g~~G~P------~~vfl~pdG~~i~~ 219 (725)
......+++.++| +++++|++|+++..
T Consensus 107 ~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~ 149 (171)
T 3cmi_A 107 NGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYER 149 (171)
T ss_dssp SSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEE
T ss_pred CCccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEE
Confidence 1111234778899 99999999999865
No 186
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=98.05 E-value=1.6e-06 Score=87.73 Aligned_cols=65 Identities=9% Similarity=0.100 Sum_probs=50.0
Q ss_pred CCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc--CcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCC
Q 004888 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (725)
Q Consensus 138 ~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~--~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~ 215 (725)
+|+|+|.|+++||+.|+.|.. .+.++..+ ++..++||.+ .+++...| ++.++|+++|+. +|+
T Consensus 120 ~k~vvV~F~a~wC~~C~~l~p------~l~~la~~~~~v~f~~vd~~-~~~l~~~~--------~i~~~PTl~~~~-~G~ 183 (217)
T 2trc_P 120 VTTIVVNIYEDGVRGCDALNS------SLECLAAEYPMVKFCKIRAS-NTGAGDRF--------SSDVLPTLLVYK-GGE 183 (217)
T ss_dssp TCEEEEEEECTTSTTHHHHHH------HHHHHHTTCTTSEEEEEEHH-HHTCSTTS--------CGGGCSEEEEEE-TTE
T ss_pred CcEEEEEEECCCCccHHHHHH------HHHHHHHHCCCeEEEEEECC-cHHHHHHC--------CCCCCCEEEEEE-CCE
Confidence 599999999999999999984 34333332 5788899887 55554444 788999999994 898
Q ss_pred ccc
Q 004888 216 PLM 218 (725)
Q Consensus 216 ~i~ 218 (725)
++.
T Consensus 184 ~v~ 186 (217)
T 2trc_P 184 LIS 186 (217)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 187
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=98.04 E-value=2.6e-06 Score=77.98 Aligned_cols=66 Identities=12% Similarity=0.049 Sum_probs=48.8
Q ss_pred CCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCcc
Q 004888 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (725)
Q Consensus 138 ~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i 217 (725)
++||+|+|+++||+.|+.|.. .|+ ++++.. .+...+|||+++.+ +. +++.+.||++++ .+|+++
T Consensus 23 ~~~vvv~F~a~wc~~C~~~~p-~l~--~la~~~-~~v~f~kvd~d~~~---~~--------~~v~~~PT~~~f-k~G~~v 86 (118)
T 3evi_A 23 DVWVIIHLYRSSIPMCLLVNQ-HLS--LLARKF-PETKFVKAIVNSCI---QH--------YHDNCLPTIFVY-KNGQIE 86 (118)
T ss_dssp TCEEEEEEECTTSHHHHHHHH-HHH--HHHHHC-TTSEEEEEEGGGTS---TT--------CCGGGCSEEEEE-ETTEEE
T ss_pred CCeEEEEEeCCCChHHHHHHH-HHH--HHHHHC-CCCEEEEEEhHHhH---HH--------CCCCCCCEEEEE-ECCEEE
Confidence 459999999999999999983 222 333333 25778899998752 22 378899999988 589888
Q ss_pred cc
Q 004888 218 MG 219 (725)
Q Consensus 218 ~~ 219 (725)
..
T Consensus 87 ~~ 88 (118)
T 3evi_A 87 AK 88 (118)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 188
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Probab=98.03 E-value=1e-05 Score=74.68 Aligned_cols=78 Identities=6% Similarity=0.016 Sum_probs=59.7
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCC--cC
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGG--WP 205 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G--~P 205 (725)
++-+++.-+.++||+|+|+++ |..|+.|.. +| .++++.+...+..++||.++.|++.+.| |+.+ .|
T Consensus 13 ~~~f~~~~~~~~pv~v~f~a~-~~~c~~~~p-~l--~~~A~~~~gk~~f~~vd~d~~~~~a~~~--------gi~~~~iP 80 (133)
T 2djk_A 13 PETYSDYMSAGIPLAYIFAET-AEERKELSD-KL--KPIAEAQRGVINFGTIDAKAFGAHAGNL--------NLKTDKFP 80 (133)
T ss_dssp HHHHHHHHHTTSCEEEEECSC-SSSHHHHHH-HH--HHHHHSSTTTSEEEEECTTTTGGGTTTT--------TCCSSSSS
T ss_pred hHHHHHHhcCCCCEEEEEecC-hhhHHHHHH-HH--HHHHHHhCCeEEEEEEchHHhHHHHHHc--------CCCcccCC
Confidence 344444456789999999999 899998763 44 3556655556999999999999887665 8888 99
Q ss_pred cEEEecC-CCCcc
Q 004888 206 LSVFLSP-DLKPL 217 (725)
Q Consensus 206 ~~vfl~p-dG~~i 217 (725)
+.+++.. +|+..
T Consensus 81 tl~i~~~~~g~~~ 93 (133)
T 2djk_A 81 AFAIQEVAKNQKF 93 (133)
T ss_dssp EEEEECTTTCCBC
T ss_pred EEEEEecCcCccc
Confidence 9999984 67663
No 189
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=98.02 E-value=3.4e-06 Score=90.31 Aligned_cols=70 Identities=16% Similarity=0.223 Sum_probs=53.7
Q ss_pred HhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc--CcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEec
Q 004888 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 211 (725)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~--~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~ 211 (725)
....+|+++|.|+++||+.|+.|.... .++++.+.. +++.++||.+.++ . +. +++.|+|+++|+.
T Consensus 263 ~~~~~k~~lv~f~a~wC~~C~~~~p~~---~~la~~~~~~~~v~~~~vd~~~~~-~-~~--------~~v~~~Pt~~~~~ 329 (361)
T 3uem_A 263 AFDEKKNVFVEFYAPWCGHCKQLAPIW---DKLGETYKDHENIVIAKMDSTANE-V-EA--------VKVHSFPTLKFFP 329 (361)
T ss_dssp HTCTTCEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTCSSEEEEEEETTTCB-C-SS--------CCCCSSSEEEEEC
T ss_pred cccCCCcEEEEEecCcCHhHHHHHHHH---HHHHHHhccCCcEEEEEEECCccc-h-hh--------cCCcccCeEEEEE
Confidence 356899999999999999999998533 345566654 4999999998776 1 22 3889999999997
Q ss_pred CC-CCc
Q 004888 212 PD-LKP 216 (725)
Q Consensus 212 pd-G~~ 216 (725)
.+ |+.
T Consensus 330 ~~~~~~ 335 (361)
T 3uem_A 330 ASADRT 335 (361)
T ss_dssp SSSSCC
T ss_pred CCCCcc
Confidence 65 443
No 190
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=98.01 E-value=6.2e-06 Score=97.61 Aligned_cols=79 Identities=11% Similarity=0.063 Sum_probs=60.0
Q ss_pred hHHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCc
Q 004888 127 GEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (725)
Q Consensus 127 ~~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~ 206 (725)
..+.++.+-+++++++|.|+++||+.|+.|.... .++++.+...+..++||.++.+++.+.| |+.|+|+
T Consensus 122 ~~~~f~~~i~~~~~~lv~Fya~wC~~C~~~~p~~---~~~a~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt 190 (780)
T 3apo_A 122 ERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTW---REFAKEVDGLLRIGAVNCGDDRMLCRMK--------GVNSYPS 190 (780)
T ss_dssp CHHHHHHHHTSSSCEEEEEECSSCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTTCSSCC----------------CE
T ss_pred chHhHHhhhcCCCcEEEEEeCCCCcchhHhhHHH---HHHHHHhcCceEEEEEeCCCcHHHHHHc--------CCceeee
Confidence 4677888889999999999999999999998643 4677777767999999999999887776 7889999
Q ss_pred EEEecCCCCcc
Q 004888 207 SVFLSPDLKPL 217 (725)
Q Consensus 207 ~vfl~pdG~~i 217 (725)
++|+ .+|+++
T Consensus 191 ~~~~-~~g~~~ 200 (780)
T 3apo_A 191 LFIF-RSGMAA 200 (780)
T ss_dssp EEEE-CTTSCC
T ss_pred EEEE-eCCcEe
Confidence 9888 677764
No 191
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=97.99 E-value=2.8e-05 Score=73.22 Aligned_cols=43 Identities=7% Similarity=-0.061 Sum_probs=29.6
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCC
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDRE 182 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~e 182 (725)
.||+|+|+|+++||+.|+.+-. .++ ++.+.+.+ ++..|.|+.+
T Consensus 30 ~gk~vlv~f~a~~C~~C~~~~~-~l~--~l~~~~~~~~~~vv~v~~d 73 (169)
T 2v1m_A 30 RGHVCLIVNVACKCGATDKNYR-QLQ--EMHTRLVGKGLRILAFPCN 73 (169)
T ss_dssp TTSEEEEEEECSSSTTHHHHHH-HHH--HHHHHHGGGTEEEEEEECC
T ss_pred CCCEEEEEEeeccCCchHHHHH-HHH--HHHHHhhcCCeEEEEEECC
Confidence 5899999999999999987642 121 33333433 4777777664
No 192
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=97.99 E-value=1.3e-05 Score=75.18 Aligned_cols=94 Identities=13% Similarity=0.069 Sum_probs=56.3
Q ss_pred cCC-cEEEEEe-ccCChhhHhhhhhccCCHHHHHHHh----cCcEEEEEcCCCCcchHHHHHH----------------H
Q 004888 137 RDV-PIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN----DWFVSIKVDREERPDVDKVYMT----------------Y 194 (725)
Q Consensus 137 e~K-pI~l~~g-~~wC~~C~~Me~e~f~d~eVa~~ln----~~FV~VkvD~ee~pd~~~~y~~----------------~ 194 (725)
.|| +|+|.|+ ++||+.|+.+- |.+.++.+ +++..|-|+.+. ++..+.|.+ .
T Consensus 34 ~gk~~vvl~F~~a~~C~~C~~~~------~~l~~~~~~~~~~~~~vv~is~d~-~~~~~~~~~~~~~~~~~~~d~~~~~~ 106 (160)
T 1xvw_A 34 RGAKNVLLVFFPLAFTGICQGEL------DQLRDHLPEFENDDSAALAISVGP-PPTHKIWATQSGFTFPLLSDFWPHGA 106 (160)
T ss_dssp TTTCEEEEEECSCTTSSHHHHHH------HHHHHTGGGTSSSSEEEEEEESCC-HHHHHHHHHHHTCCSCEEECTTTTTH
T ss_pred cCCCCEEEEEECCCCCCchHHHH------HHHHHHHHHHHHCCcEEEEEeCCC-HHHHHHHHHhcCCCceEEecCCcChH
Confidence 466 9999997 99999999865 34443332 246666666653 221122210 0
Q ss_pred HHHhcCCC----CcC--cEEEecCCCCccccc-cccCCCCCCCcchHHHHHHHHH
Q 004888 195 VQALYGGG----GWP--LSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKVK 242 (725)
Q Consensus 195 ~q~~~g~~----G~P--~~vfl~pdG~~i~~~-tY~p~~~~~~~~~F~~~L~~i~ 242 (725)
+...+|+. |+| ++++++++|+++... +..+.+ +.+.++++.|.
T Consensus 107 ~~~~~~v~~~~~~~p~~~~~lid~~G~i~~~~~g~~~~~-----~~~~~l~~~l~ 156 (160)
T 1xvw_A 107 VSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEV-----RDQRLWTDALA 156 (160)
T ss_dssp HHHHTTCEETTTTEECSEEEEECTTSBEEEEEECCTTCC-----CCHHHHHHHHH
T ss_pred HHHHcCCccccCCCeeeeEEEECCCCeEEEEEecCCCCC-----CCHHHHHHHHH
Confidence 11224666 899 999999999998652 333222 24556665554
No 193
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=97.99 E-value=3.2e-05 Score=74.60 Aligned_cols=43 Identities=9% Similarity=0.083 Sum_probs=30.1
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCC
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDRE 182 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~e 182 (725)
.||+|+|+|+++||+.|+.+... + .++.+.+.+ .+..|-|..+
T Consensus 37 ~Gk~vlv~F~atwC~~C~~~~p~-l--~~l~~~~~~~~~~vi~is~d 80 (180)
T 3kij_A 37 KGKVSLVVNVASDCQLTDRNYLG-L--KELHKEFGPSHFSVLAFPCN 80 (180)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHH-H--HHHHHHHTTTSEEEEEEECC
T ss_pred CCCEEEEEEEecCCCCcHHHHHH-H--HHHHHHhccCCeEEEEEECC
Confidence 68999999999999999987532 2 234444433 4777777654
No 194
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=97.97 E-value=1.6e-05 Score=77.87 Aligned_cols=79 Identities=6% Similarity=-0.099 Sum_probs=50.9
Q ss_pred cCCcEEEEEe-ccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCcchHHHHHHH------------------HH
Q 004888 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTY------------------VQ 196 (725)
Q Consensus 137 e~KpI~l~~g-~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~pd~~~~y~~~------------------~q 196 (725)
.||+|+|+|+ ++||+.|+.+.... . ++.+.+.+ ++..|.|+.+. ++..+.|.+. +.
T Consensus 44 ~gk~vvl~F~~a~~C~~C~~~~~~l-~--~l~~~~~~~~v~vv~Vs~d~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 119 (195)
T 2bmx_A 44 PGKWRVVFFWPKDFTFVCPTEIAAF-S--KLNDEFEDRDAQILGVSIDS-EFAHFQWRAQHNDLKTLPFPMLSDIKRELS 119 (195)
T ss_dssp TTCEEEEEECSCTTSCCCHHHHHHH-H--HTHHHHHTTTEEEEEEESSC-HHHHHHHHHHCTTGGGCCSCEEECTTSHHH
T ss_pred CCCcEEEEEEcCCCCCCcHHHHHHH-H--HHHHHHHHCCCEEEEEECCC-HHHHHHHHHHhccccCCceeEEeCCchHHH
Confidence 4899999999 99999999875322 1 23333433 56666666653 2222222111 11
Q ss_pred HhcCCC-----CcCcEEEecCCCCcccc
Q 004888 197 ALYGGG-----GWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 197 ~~~g~~-----G~P~~vfl~pdG~~i~~ 219 (725)
..+++. ++|+++|++++|+++..
T Consensus 120 ~~~~v~~~~g~~~P~~~lid~~G~i~~~ 147 (195)
T 2bmx_A 120 QAAGVLNADGVADRVTFIVDPNNEIQFV 147 (195)
T ss_dssp HHHTCBCTTSSBCEEEEEECTTSBEEEE
T ss_pred HHhCCcccCCCccceEEEEcCCCeEEEE
Confidence 124677 89999999999999875
No 195
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=97.96 E-value=7.8e-06 Score=77.25 Aligned_cols=76 Identities=16% Similarity=0.248 Sum_probs=48.8
Q ss_pred cCCcEEEEEeccCChh-hHhhhhhccCCHHHHHHHhc-------CcEEEEEcCCC---CcchHHHHHH------------
Q 004888 137 RDVPIFLSIGYSTCHW-CHVMEVESFEDEGVAKLLND-------WFVSIKVDREE---RPDVDKVYMT------------ 193 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~-C~~Me~e~f~d~eVa~~ln~-------~FV~VkvD~ee---~pd~~~~y~~------------ 193 (725)
.||+|+|+|+++||+. |+.+. |.+.++..+ ++..|.|+.+. .++..+.|.+
T Consensus 34 ~gk~vll~f~~~~C~~~C~~~~------~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~ 107 (172)
T 2k6v_A 34 QDKVVLLFFGFTRCPDVCPTTL------LALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGS 107 (172)
T ss_dssp TTSEEEEEEECTTCSSHHHHHH------HHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCC
T ss_pred CCCEEEEEEECCCCcchhHHHH------HHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCC
Confidence 6899999999999997 99876 344443321 46677776653 2333333321
Q ss_pred ------HHHHh--------------cCCCCcCcEEEecCCCCcccc
Q 004888 194 ------YVQAL--------------YGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 194 ------~~q~~--------------~g~~G~P~~vfl~pdG~~i~~ 219 (725)
..+.+ +++.++|++++++ +|+++..
T Consensus 108 ~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~ 152 (172)
T 2k6v_A 108 PEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLL 152 (172)
T ss_dssp HHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEE
T ss_pred HHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEE
Confidence 12221 1234789999999 9998764
No 196
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Probab=97.95 E-value=6.5e-06 Score=80.20 Aligned_cols=43 Identities=9% Similarity=0.099 Sum_probs=29.1
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCC
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDRE 182 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~e 182 (725)
.||+|+|+|+++||+.|+.+-.. + .++.+.+.+ ++..|-|..+
T Consensus 45 ~Gk~vlv~F~atwC~~C~~~~p~-l--~~l~~~~~~~~~~vi~is~d 88 (187)
T 3dwv_A 45 KGSPLLIYNVASKCGYTKGGYET-A--TTLYNKYKSQGFTVLAFPSN 88 (187)
T ss_dssp TTSCEEEEEECCBCSCCTTHHHH-H--HHHHHHHGGGTCEEEEEEBC
T ss_pred CCCEEEEEEecCCCCCcHHHHHH-H--HHHHHHhhhCCeEEEEEECc
Confidence 68999999999999999986521 1 233333333 4777766543
No 197
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=97.93 E-value=2.1e-05 Score=76.32 Aligned_cols=79 Identities=9% Similarity=-0.071 Sum_probs=50.5
Q ss_pred cCCcEEEEEe-ccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCcchHHHHHHH------------------HH
Q 004888 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTY------------------VQ 196 (725)
Q Consensus 137 e~KpI~l~~g-~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~pd~~~~y~~~------------------~q 196 (725)
.||+++|+|+ ++||+.|+.+.. .++ ++.+.+.+ ++..|.|+.+. ++..+.|.+. +.
T Consensus 30 ~gk~vvl~F~~a~~C~~C~~~~~-~l~--~~~~~~~~~~v~vv~vs~d~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 105 (187)
T 1we0_A 30 KGKWSIVVFYPADFSFVCPTELE-DVQ--KEYAELKKLGVEVYSVSTDT-HFVHKAWHENSPAVGSIEYIMIGDPSQTIS 105 (187)
T ss_dssp SSSEEEEEECSCTTCSSCTHHHH-HHH--HHHHHHHHTTEEEEEEESSC-HHHHHHHHHSCHHHHTCCSEEEECTTCHHH
T ss_pred CCCCEEEEEECCCCCcchHHHHH-HHH--HHHHHHHHcCCEEEEEECCC-HHHHHHHHHHhccccCCCceEEECCchHHH
Confidence 5899999999 999999997653 221 23333432 56667776654 2222222110 11
Q ss_pred HhcCCC------CcCcEEEecCCCCcccc
Q 004888 197 ALYGGG------GWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 197 ~~~g~~------G~P~~vfl~pdG~~i~~ 219 (725)
..+|+. ++|+++++|++|+++..
T Consensus 106 ~~~~v~~~~~g~~~P~~~lid~~G~i~~~ 134 (187)
T 1we0_A 106 RQFDVLNEETGLADRGTFIIDPDGVIQAI 134 (187)
T ss_dssp HHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHhCCCcCCCCceeeEEEEECCCCeEEEE
Confidence 124666 89999999999999865
No 198
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=97.89 E-value=8.9e-06 Score=68.27 Aligned_cols=61 Identities=16% Similarity=0.108 Sum_probs=42.3
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhc---CcEEEEEcCC-CCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCcc
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDRE-ERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~---~FV~VkvD~e-e~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i 217 (725)
++.|+++||++|+.|.. .+.+++++ .|..++||.+ +.+++.+.| |+.+.|++++ +|+.+
T Consensus 4 ~~~f~~~~C~~C~~~~~------~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------gv~~vPt~~i---~g~~~ 66 (80)
T 2k8s_A 4 KAIFYHAGCPVCVSAEQ------AVANAIDPSKYTVEIVHLGTDKARIAEAEKA--------GVKSVPALVI---DGAAF 66 (80)
T ss_dssp EEEEEECSCHHHHHHHH------HHHHHSCTTTEEEEEEETTTCSSTHHHHHHH--------TCCEEEEEEE---TTEEE
T ss_pred eEEEeCCCCCchHHHHH------HHHHHHHhcCCeEEEEEecCChhhHHHHHHc--------CCCcCCEEEE---CCEEE
Confidence 56688999999999983 44555543 4666777764 345444333 8889999887 88865
Q ss_pred cc
Q 004888 218 MG 219 (725)
Q Consensus 218 ~~ 219 (725)
+.
T Consensus 67 ~~ 68 (80)
T 2k8s_A 67 HI 68 (80)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 199
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Probab=97.88 E-value=4.4e-05 Score=76.23 Aligned_cols=43 Identities=9% Similarity=-0.052 Sum_probs=29.9
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHh-cCcEEEEEcCC
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDRE 182 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln-~~FV~VkvD~e 182 (725)
.||+|+|+|+++||+.|+.+.. .+ .++.+.+. +.+..|-|+.+
T Consensus 46 ~Gk~vlv~FwatwC~~C~~e~p-~l--~~l~~~~~~~g~~vv~v~~d 89 (208)
T 2f8a_A 46 RGKVLLIENVASLGGTTVRDYT-QM--NELQRRLGPRGLVVLGFPCN 89 (208)
T ss_dssp TTSEEEEEEECSSSTTHHHHHH-HH--HHHHHHHGGGTEEEEEEECC
T ss_pred CCCEEEEEEECCCCccHHHHHH-HH--HHHHHHccCCCeEEEEEECC
Confidence 5899999999999999998542 12 13333333 35888888764
No 200
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=97.87 E-value=1.3e-05 Score=72.43 Aligned_cols=64 Identities=19% Similarity=0.379 Sum_probs=46.5
Q ss_pred CcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCcc
Q 004888 139 VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (725)
Q Consensus 139 KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i 217 (725)
.+.++.|+++||++|+.++. -+.++..+ .+-..+||+++.|++...| |+. +|+.+++ -+|+++
T Consensus 29 m~~vv~y~~~~C~~C~~a~~------~L~~l~~e~~i~~~~vDId~d~~l~~~y--------gv~-VP~l~~~-~dG~~v 92 (107)
T 2fgx_A 29 PRKLVVYGREGCHLCEEMIA------SLRVLQKKSWFELEVINIDGNEHLTRLY--------NDR-VPVLFAV-NEDKEL 92 (107)
T ss_dssp CCCEEEEECSSCHHHHHHHH------HHHHHHHHSCCCCEEEETTTCHHHHHHS--------TTS-CSEEEET-TTTEEE
T ss_pred ccEEEEEeCCCChhHHHHHH------HHHHHHHhcCCeEEEEECCCCHHHHHHh--------CCC-CceEEEE-ECCEEE
Confidence 36799999999999999973 33333222 3677789999888876555 665 9998766 468877
Q ss_pred c
Q 004888 218 M 218 (725)
Q Consensus 218 ~ 218 (725)
.
T Consensus 93 ~ 93 (107)
T 2fgx_A 93 C 93 (107)
T ss_dssp E
T ss_pred E
Confidence 4
No 201
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=97.84 E-value=1.6e-05 Score=76.90 Aligned_cols=43 Identities=12% Similarity=0.112 Sum_probs=30.2
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHh-cCcEEEEEcCC
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDRE 182 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln-~~FV~VkvD~e 182 (725)
.||+|+|+|+++||+.|+.+... + .++.+.+. +.+..|.|+.+
T Consensus 48 ~Gk~vlv~F~atwC~~C~~~~p~-l--~~l~~~~~~~~v~vv~vs~d 91 (181)
T 2p31_A 48 RGSVSLVVNVASECGFTDQHYRA-L--QQLQRDLGPHHFNVLAFPCN 91 (181)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHH-H--HHHHHHHGGGTEEEEEEECC
T ss_pred CCCEEEEEEeccCCCCcHHHHHH-H--HHHHHHhhcCCEEEEEEECc
Confidence 68999999999999999976531 2 23344443 34777777664
No 202
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=97.83 E-value=4.7e-05 Score=72.05 Aligned_cols=78 Identities=13% Similarity=0.022 Sum_probs=46.6
Q ss_pred cCCcEEEEEeccC-ChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchH---------------H-HHHHHHHHhc
Q 004888 137 RDVPIFLSIGYST-CHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVD---------------K-VYMTYVQALY 199 (725)
Q Consensus 137 e~KpI~l~~g~~w-C~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~---------------~-~y~~~~q~~~ 199 (725)
.||+++|.|++.| |+.|+.+... ++ ++.+.+ +++..|-|+.+....+. . .-....+ .+
T Consensus 43 ~gk~~vl~F~~~~~C~~C~~~~~~-l~--~l~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~ 117 (167)
T 2jsy_A 43 KGKVTIISVIPSIDTGVCDAQTRR-FN--EEAAKL-GDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGE-AF 117 (167)
T ss_dssp TTSCEEEEECSCSTTSHHHHTHHH-HH--HHHHHH-SSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHH-HT
T ss_pred CCCeEEEEEecCCCCCchHHHHHH-HH--HHHHHc-CCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHH-Hh
Confidence 5899999999999 9999987531 11 233333 45666666554211000 0 0001111 23
Q ss_pred CCCC------cCcEEEecCCCCcccc
Q 004888 200 GGGG------WPLSVFLSPDLKPLMG 219 (725)
Q Consensus 200 g~~G------~P~~vfl~pdG~~i~~ 219 (725)
|+.+ .|+++++|++|++++.
T Consensus 118 ~v~~~~~g~~~p~~~lid~~G~i~~~ 143 (167)
T 2jsy_A 118 GVYIKELRLLARSVFVLDENGKVVYA 143 (167)
T ss_dssp TCBBTTTCSBCCEEEEECTTSCEEEE
T ss_pred CCccccCCceeeEEEEEcCCCcEEEE
Confidence 5544 4999999999999865
No 203
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10
Probab=97.81 E-value=2.7e-05 Score=76.35 Aligned_cols=79 Identities=11% Similarity=0.052 Sum_probs=50.4
Q ss_pred cCCcEEEEEe-ccCChhhHhhhhhccCCHHHHHHHh-cCcEEEEEcCCCCcchHHHHHH---------------------
Q 004888 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMT--------------------- 193 (725)
Q Consensus 137 e~KpI~l~~g-~~wC~~C~~Me~e~f~d~eVa~~ln-~~FV~VkvD~ee~pd~~~~y~~--------------------- 193 (725)
.||+|+|+|+ ++||+.|+.+.... . ++.+.+. +++..|.|+.+. ++..+.|.+
T Consensus 32 ~gk~vvl~F~~a~~C~~C~~~~~~l-~--~l~~~~~~~~v~vv~Is~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 107 (198)
T 1zof_A 32 GKNGVILFFWPKDFTFVCPTEIIAF-D--KRVKDFHEKGFNVIGVSIDS-EQVHFAWKNTPVEKGGIGQVSFPMVADITK 107 (198)
T ss_dssp CSSEEEEEECSCTTCSSCCTHHHHH-H--HTHHHHHHTTEEEEEEESSC-HHHHHHHHTSCGGGTCCCCCSSCEEECTTS
T ss_pred CCCcEEEEEECCCCCCchHHHHHHH-H--HHHHHHHHcCCEEEEEECCC-HHHHHHHHHhhhhcccccCceeEEEECCch
Confidence 5899999999 99999999775321 1 2222232 356677776653 222122211
Q ss_pred HHHHhcCCC-----CcCcEEEecCCCCcccc
Q 004888 194 YVQALYGGG-----GWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 194 ~~q~~~g~~-----G~P~~vfl~pdG~~i~~ 219 (725)
.+...+|+. ++|+++++|++|+++..
T Consensus 108 ~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~ 138 (198)
T 1zof_A 108 SISRDYDVLFEEAIALRGAFLIDKNMKVRHA 138 (198)
T ss_dssp HHHHHTTCEETTTEECEEEEEEETTTEEEEE
T ss_pred HHHHHhCCcccCCcccceEEEECCCCEEEEE
Confidence 111224776 89999999999999865
No 204
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=97.81 E-value=5.7e-05 Score=72.68 Aligned_cols=93 Identities=15% Similarity=0.124 Sum_probs=55.0
Q ss_pred cCCcEEEEEeccC-ChhhHhhhhhccCCHHHHHHHh-cCcEEEEEcCCCCcchHHHH----------------HHHHHHh
Q 004888 137 RDVPIFLSIGYST-CHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVY----------------MTYVQAL 198 (725)
Q Consensus 137 e~KpI~l~~g~~w-C~~C~~Me~e~f~d~eVa~~ln-~~FV~VkvD~ee~pd~~~~y----------------~~~~q~~ 198 (725)
.|||++|.|++.| |+.|+.+- |.+.++.. +++..|-|+.+. ++..+.| .... ..
T Consensus 43 ~gk~vvl~F~~t~~C~~C~~~~------~~l~~l~~~~~v~vv~Is~D~-~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~ 114 (175)
T 1xvq_A 43 RGKSVLLNIFPSVDTPVCATSV------RTFDERAAASGATVLCVSKDL-PFAQKRFCGAEGTENVMPASAFRDSFG-ED 114 (175)
T ss_dssp TTSCEEEEECSCCCSSCCCHHH------HHHHHHHHHTTCEEEEEESSC-HHHHTTCC------CEEEEECTTSSHH-HH
T ss_pred CCCEEEEEEEeCCCCchHHHHH------HHHHHHHhhcCCEEEEEECCC-HHHHHHHHHHcCCCCceEeeCCHHHHH-HH
Confidence 4899999999999 99998765 44444443 455556655542 1100000 0011 12
Q ss_pred cCCCCc---------CcEEEecCCCCcccccc--ccCCCCCCCcchHHHHHHHHH
Q 004888 199 YGGGGW---------PLSVFLSPDLKPLMGGT--YFPPEDKYGRPGFKTILRKVK 242 (725)
Q Consensus 199 ~g~~G~---------P~~vfl~pdG~~i~~~t--Y~p~~~~~~~~~F~~~L~~i~ 242 (725)
+|+.+. |+++++|++|+++.... -... .+.+.++|+.+.
T Consensus 115 ~gv~~~~~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~-----~~~~~~~l~~l~ 164 (175)
T 1xvq_A 115 YGVTIADGPMAGLLARAIVVIGADGNVAYTELVPEIAQ-----EPNYEAALAALG 164 (175)
T ss_dssp TTCBBCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTC-----CCCHHHHHHHHH
T ss_pred hCCcccccccCCcccceEEEECCCCeEEEEEECCCcCC-----CCCHHHHHHHHH
Confidence 355554 99999999999886531 1111 235777776665
No 205
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=97.79 E-value=0.00076 Score=74.33 Aligned_cols=274 Identities=12% Similarity=0.102 Sum_probs=149.9
Q ss_pred HHH-HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCccccccccccCcceEEechHHHHHHh
Q 004888 379 LYD-QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDIL 457 (725)
Q Consensus 379 LyD-NA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~l 457 (725)
+|+ .+-++.+|+..|++++|+.|++.|.++++.+.+.+.+..-+|+. +..|.. |....+++.+
T Consensus 73 lY~G~~Gia~~l~~l~~~t~d~~yl~~a~~~l~~~~~~l~~~~~~~~~--------------G~aG~l--~~l~~ly~~~ 136 (411)
T 3e6u_A 73 GYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKRSITFLC--------------GDAGPL--AVAAVLYHKM 136 (411)
T ss_dssp SSSSHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCCSCCCCTTT--------------STHHHH--HHHHHHHHHT
T ss_pred eeeChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccCCcccc--------------CcHHHH--HHHHHHHHHh
Confidence 455 77789999999999999999999999999998876543323332 233443 3455566667
Q ss_pred hhh---HHHHHHHhcc---cCCCCcCCCCCCCCCCCCCCcc-eeeccCCchHHHHhcC---CCHHHHHHHHHHHHH---H
Q 004888 458 GEH---AILFKEHYYL---KPTGNCDLSRMSDPHNEFKGKN-VLIELNDSSASASKLG---MPLEKYLNILGECRR---K 524 (725)
Q Consensus 458 g~~---~~l~~~~y~l---~~~Gn~e~~~~~dp~~~f~g~n-vL~~~~~~~~~a~~~g---~~~e~~~~~l~~~r~---k 524 (725)
++. .+.+.+.-.+ ..+... +-..|.. ++...- .+.+..+ +....+.++.+.+.+ .
T Consensus 137 g~~~~a~~~~~~l~~~~~~~~~~~~---------dll~G~AG~l~aLl---~L~~~~~~~~~~~~~i~~i~~~ii~~g~~ 204 (411)
T 3e6u_A 137 NNEKQAEDCITRLIHLNKIDPHAPN---------EMLYGRIGYIYALL---FVNKNFGVEKIPQSHIQQICETILTSGEN 204 (411)
T ss_dssp TCHHHHHHHHHHHHGGGGGCTTCCS---------STTTSHHHHHHHHH---HHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccccCCh---------hhhcCcHHHHHHHH---HHHHHcCCccchHHHHHHHHHHHHHHHHH
Confidence 643 1222222222 111111 1112331 110000 0111112 111112222222211 1
Q ss_pred HHhhhcc-CCCCC-C--CcchhhhcH-HH--HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhcc
Q 004888 525 LFDVRSK-RPRPH-L--DDKVIVSWN-GL--VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLY 597 (725)
Q Consensus 525 L~~~R~~-R~~P~-l--DdKiitsWN-al--~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~ 597 (725)
+...+.. -..|. . .++..++|- |. ++.+|+++++.+++ +++++.++++.+++.+...
T Consensus 205 ~~~~~~~~~~~pl~~~w~~~~~~G~aHG~aGI~~~Ll~~~~~~~~----------------~~~~~~i~~~l~~l~~~~~ 268 (411)
T 3e6u_A 205 LARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVSQ----------------GKLHSLVKPSVDYVCQLKF 268 (411)
T ss_dssp HHHHTTTTTTCSCCCCBTTBCBCSTTTSHHHHHHHHTCGGGCCCH----------------HHHHHTHHHHHHHHHHTCC
T ss_pred HHHhccccCCCCcceeecCccCCcccccHHHHHHHHHHHHhhcCh----------------HHHHHHHHHHHHHHHHhhc
Confidence 1111110 02221 0 122222221 21 25567777777766 7899999999999998765
Q ss_pred ccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccc
Q 004888 598 DEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLR 677 (725)
Q Consensus 598 d~~~G~l~~s~~~g~~~~~~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r 677 (725)
. +|.+..+..++......+-.+-+=.+.+++.++++++|++|++.|++..+.+.+. | .. .
T Consensus 269 ~--~g~wp~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~------g-~~---~-------- 328 (411)
T 3e6u_A 269 P--SGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQAYKVFREEKYLCDAYQCADVIWQY------G-LL---K-------- 328 (411)
T ss_dssp T--TSCCCSBTTCCCCCCCSSSSSHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH------C-SB---T--------
T ss_pred c--CCCCCCCCCcccCccccccCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc------C-cc---C--------
Confidence 3 3432211111111222344455667778999999999999999999888766553 1 00 0
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 004888 678 VKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLYLR 723 (725)
Q Consensus 678 ~k~~~D~a~PS~Nsv~a~~LlrL~~~t~~~~~~~y~~~A~~~l~~~ 723 (725)
.+...--|.+=.+..+++++..|++ +.|+++|.+++...
T Consensus 329 ----~~~~lChG~aG~~~~ll~~~~~t~~---~~~~~~A~~~~~~~ 367 (411)
T 3e6u_A 329 ----KGYGLCHGSAGNAYAFLTLYNLTQD---MKYLYRACKFAEWC 367 (411)
T ss_dssp ----TCSCSTTSHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHH
T ss_pred ----CCCceecChHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHH
Confidence 0111224555567778999999997 78999999988754
No 206
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=97.78 E-value=3.5e-05 Score=74.43 Aligned_cols=43 Identities=9% Similarity=0.023 Sum_probs=29.8
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCC
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDRE 182 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~e 182 (725)
.||+|+|+|+++||+.|+.+... + .++.+.+.+ ++..|.|+.+
T Consensus 46 ~gk~vll~F~atwC~~C~~~~~~-l--~~l~~~~~~~~v~vv~vs~d 89 (183)
T 2obi_A 46 RGFVCIVTNVASQCGKTEVNYTQ-L--VDLHARYAECGLRILAFPCN 89 (183)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHH-H--HHHHHHHGGGTEEEEEEECC
T ss_pred CCCEEEEEEeCCCCCCcHHHHHH-H--HHHHHHHhcCCeEEEEEECC
Confidence 58999999999999999876532 2 133444433 4777777654
No 207
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=97.77 E-value=2e-05 Score=69.56 Aligned_cols=62 Identities=21% Similarity=0.321 Sum_probs=41.3
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCC--CCcchHHHHHHHHHHhcCCCCcCcEEEecCCC
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE--ERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~e--e~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG 214 (725)
.++|+++.|+++||++|+.+.. .+.. +.+++-..+||++ +.+++.+. +| .+.|++ |. +|
T Consensus 14 ~~~~~v~~f~~~~C~~C~~~~~-~L~~------l~~~i~~~~vdi~~~~~~el~~~--------~g-~~vP~l-~~--~g 74 (100)
T 1wjk_A 14 RALPVLTLFTKAPCPLCDEAKE-VLQP------YKDRFILQEVDITLPENSTWYER--------YK-FDIPVF-HL--NG 74 (100)
T ss_dssp CCCCEEEEEECSSCHHHHHHHH-HTST------TSSSSEEEEEETTSSTTHHHHHH--------SS-SSCSEE-EE--SS
T ss_pred CCCCEEEEEeCCCCcchHHHHH-HHHH------hhhCCeEEEEECCCcchHHHHHH--------HC-CCCCEE-EE--CC
Confidence 4577899999999999999974 3331 2234666777877 44444333 37 899975 44 57
Q ss_pred Ccc
Q 004888 215 KPL 217 (725)
Q Consensus 215 ~~i 217 (725)
+.+
T Consensus 75 ~~~ 77 (100)
T 1wjk_A 75 QFL 77 (100)
T ss_dssp SEE
T ss_pred EEE
Confidence 764
No 208
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=97.75 E-value=5.5e-05 Score=76.01 Aligned_cols=80 Identities=10% Similarity=0.021 Sum_probs=49.8
Q ss_pred cCCcEEEEEe-ccCChhhHhhhhhccCCHHHHHHHh-cCcEEEEEcCCCCcchHHHHHH---------------------
Q 004888 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMT--------------------- 193 (725)
Q Consensus 137 e~KpI~l~~g-~~wC~~C~~Me~e~f~d~eVa~~ln-~~FV~VkvD~ee~pd~~~~y~~--------------------- 193 (725)
.||+++|.|+ ++||+.|+.+.. .|+ ++.+.+. +++..|-|..+..... +.|.+
T Consensus 55 ~Gk~vll~F~pa~~Cp~C~~~~~-~l~--~l~~~~~~~~v~vv~Is~D~~~~~-~~~~~~~~~~~g~~~~~fp~l~D~~~ 130 (220)
T 1zye_A 55 KGKYLVLFFYPLDFTFVCPTEII-AFS--DKASEFHDVNCEVVAVSVDSHFSH-LAWINTPRKNGGLGHMNIALLSDLTK 130 (220)
T ss_dssp TTSEEEEEECSCTTCSSSHHHHH-HHH--HHHHHHHHTTEEEEEEESSCHHHH-HHHHTSCGGGTCCCSCSSEEEECTTS
T ss_pred CCCeEEEEEECCCCCCCCHHHHH-HHH--HHHHHHHHCCCEEEEEECCCHHHH-HHHHHHHHHhCCCcCCceEEEECCcH
Confidence 4799999999 999999997653 222 2333332 3566666665431111 11100
Q ss_pred HHHHhcCCC------CcCcEEEecCCCCccccc
Q 004888 194 YVQALYGGG------GWPLSVFLSPDLKPLMGG 220 (725)
Q Consensus 194 ~~q~~~g~~------G~P~~vfl~pdG~~i~~~ 220 (725)
.+...+|+. ++|+++|+|++|++++..
T Consensus 131 ~i~~~ygv~~~~~g~~~P~~~liD~~G~I~~~~ 163 (220)
T 1zye_A 131 QISRDYGVLLEGPGLALRGLFIIDPNGVIKHLS 163 (220)
T ss_dssp HHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHHhCCeecCCCcccceEEEECCCCEEEEEE
Confidence 111224666 899999999999998753
No 209
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Probab=97.73 E-value=2.7e-05 Score=75.93 Aligned_cols=79 Identities=5% Similarity=-0.064 Sum_probs=49.4
Q ss_pred cCCcEEEEEe-ccCChhhHhhhhhccCCHHHHHHHh-cCcEEEEEcCCCCcchHHHHHH---------------------
Q 004888 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMT--------------------- 193 (725)
Q Consensus 137 e~KpI~l~~g-~~wC~~C~~Me~e~f~d~eVa~~ln-~~FV~VkvD~ee~pd~~~~y~~--------------------- 193 (725)
.||+|+|+|+ ++||+.|..+... ++ ++.+.+. +++..|-|+.+. ++..+.|.+
T Consensus 30 ~gk~vvl~F~~a~~C~~C~~~~~~-l~--~~~~~~~~~~v~vv~Is~d~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~ 105 (192)
T 2h01_A 30 GKKYVLLYFYPLDFTFVCPSEIIA-LD--KALDSFKERNVELLGCSVDS-KFTHLAWKKTPLSQGGIGNIKHTLISDISK 105 (192)
T ss_dssp TTCEEEEEECSCSSCSSCCHHHHH-HH--HTHHHHHHTTEEEEEEESSC-HHHHHHHHTSCGGGTCCCSCSSEEEECTTS
T ss_pred CCCeEEEEEECCCCCCCCHHHHHH-HH--HHHHHHHHCCCEEEEEEeCC-HHHHHHHHHhHHhhCCccCCCcCeEECCcH
Confidence 5899999999 9999999976532 21 2222332 356666666543 221111111
Q ss_pred HHHHhcCCC-----CcCcEEEecCCCCcccc
Q 004888 194 YVQALYGGG-----GWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 194 ~~q~~~g~~-----G~P~~vfl~pdG~~i~~ 219 (725)
.+...+|+. ++|+++++|++|++++.
T Consensus 106 ~~~~~~gv~~~~g~~~P~~~liD~~G~i~~~ 136 (192)
T 2h01_A 106 SIARSYDVLFNESVALRAFVLIDKQGVVQHL 136 (192)
T ss_dssp HHHHHTTCEETTTEECCEEEEECTTSBEEEE
T ss_pred HHHHHhCCcCcCCceeeEEEEEcCCCEEEEE
Confidence 011224666 79999999999998865
No 210
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=97.73 E-value=4.9e-05 Score=75.46 Aligned_cols=67 Identities=16% Similarity=0.227 Sum_probs=49.0
Q ss_pred cCCcEEEEEecc-CChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCC--CcchHHHHHHHHHHhcCCCCcCcEEEecCC
Q 004888 137 RDVPIFLSIGYS-TCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE--RPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (725)
Q Consensus 137 e~KpI~l~~g~~-wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee--~pd~~~~y~~~~q~~~g~~G~P~~vfl~pd 213 (725)
+++.+++.|+++ ||++|+.|... ++ ++++. ..++..++||.++ .+++.+.| |+.++|+++|+ .+
T Consensus 21 ~~~v~lv~f~~~~~C~~C~~~~~~-~~--~la~~-~~~v~~~~vd~~~~~~~~~~~~~--------~v~~~Pt~~~~-~~ 87 (226)
T 1a8l_A 21 VNPVKLIVFVRKDHCQYCDQLKQL-VQ--ELSEL-TDKLSYEIVDFDTPEGKELAKRY--------RIDRAPATTIT-QD 87 (226)
T ss_dssp CSCEEEEEEECSSSCTTHHHHHHH-HH--HHHTT-CTTEEEEEEETTSHHHHHHHHHT--------TCCSSSEEEEE-ET
T ss_pred CCCeEEEEEecCCCCchhHHHHHH-HH--HHHhh-CCceEEEEEeCCCcccHHHHHHc--------CCCcCceEEEE-cC
Confidence 344457899999 99999999753 32 34433 4568889999987 66666554 88999999998 45
Q ss_pred CCc
Q 004888 214 LKP 216 (725)
Q Consensus 214 G~~ 216 (725)
|+.
T Consensus 88 g~~ 90 (226)
T 1a8l_A 88 GKD 90 (226)
T ss_dssp TBC
T ss_pred Cce
Confidence 553
No 211
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=97.71 E-value=9.4e-05 Score=71.71 Aligned_cols=43 Identities=7% Similarity=-0.127 Sum_probs=28.8
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHh-cCcEEEEEcCC
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDRE 182 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln-~~FV~VkvD~e 182 (725)
.||+|+|.|+++||+.|+.+-.. + .++.+.+. +.+..|-|+.+
T Consensus 48 ~Gk~vlv~F~atwC~~C~~~~~~-l--~~l~~~~~~~~v~vv~is~d 91 (185)
T 2gs3_A 48 RGFVCIVTNVASQGGKTEVNYTQ-L--VDLHARYAECGLRILAFPCN 91 (185)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHH-H--HHHHHHHGGGTEEEEEEECC
T ss_pred CCCEEEEEEecCCCCchHHHHHH-H--HHHHHHhhcCCeEEEEEECc
Confidence 58999999999999999875421 1 13333333 34677777654
No 212
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=97.70 E-value=8.2e-05 Score=73.23 Aligned_cols=79 Identities=9% Similarity=0.022 Sum_probs=49.8
Q ss_pred cCCcEEEEEe-ccCChhhHhhhhhccCCHHHHHHHh-cCcEEEEEcCCCCcchHHHHHH---------------------
Q 004888 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMT--------------------- 193 (725)
Q Consensus 137 e~KpI~l~~g-~~wC~~C~~Me~e~f~d~eVa~~ln-~~FV~VkvD~ee~pd~~~~y~~--------------------- 193 (725)
.||+++|.|+ ++||+.|+.+... ++ ++.+.+. +++..|-|+.+. ++..+.|.+
T Consensus 35 ~gk~vvl~F~~~~~C~~C~~~~~~-l~--~l~~~~~~~~v~vi~Is~D~-~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~ 110 (202)
T 1uul_A 35 KGKWLVLFFYPMDFTFVCPTEICQ-FS--DRVKEFSDIGCEVLACSMDS-EYSHLAWTSIERKRGGLGQMNIPILADKTK 110 (202)
T ss_dssp TTSEEEEEECSCTTCSHHHHHHHH-HH--HTHHHHHTTTEEEEEEESSC-HHHHHHHHHSCGGGTCCCSCSSCEEECTTC
T ss_pred CCCeEEEEEECCCCCCcCHHHHHH-HH--HHHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHhhCCCCCCceeEEECCch
Confidence 4899999999 9999999976532 21 2333333 356666666553 111111111
Q ss_pred HHHHhcCCC------CcCcEEEecCCCCcccc
Q 004888 194 YVQALYGGG------GWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 194 ~~q~~~g~~------G~P~~vfl~pdG~~i~~ 219 (725)
.+...+|+. ++|+++|+|++|++++.
T Consensus 111 ~~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~ 142 (202)
T 1uul_A 111 CIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQI 142 (202)
T ss_dssp HHHHHHTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHHHHcCCccCCCCceeeEEEEECCCCEEEEE
Confidence 011123666 89999999999999875
No 213
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=97.70 E-value=0.00014 Score=72.61 Aligned_cols=72 Identities=17% Similarity=0.088 Sum_probs=49.1
Q ss_pred hcCCcEEEEEeccC--ChhhHhhhhhccCCHHHHHHH--hcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEec
Q 004888 136 KRDVPIFLSIGYST--CHWCHVMEVESFEDEGVAKLL--NDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 211 (725)
Q Consensus 136 ~e~KpI~l~~g~~w--C~~C~~Me~e~f~d~eVa~~l--n~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~ 211 (725)
+..+||+|.+++++ |+||..+....=.=.++++.+ ......++||.++.+++.+.| |+.|+|+++|+.
T Consensus 18 ~~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Ptl~~~~ 89 (229)
T 2ywm_A 18 EFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKY--------GVDRVPTIVIEG 89 (229)
T ss_dssp HCCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHHHHHHT--------TCCBSSEEEEES
T ss_pred hccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHHHHHHc--------CCCcCcEEEEEC
Confidence 56789888887543 666655543221112333333 557888999999999888776 899999999996
Q ss_pred CCCCc
Q 004888 212 PDLKP 216 (725)
Q Consensus 212 pdG~~ 216 (725)
+|+.
T Consensus 90 -~~~~ 93 (229)
T 2ywm_A 90 -DKDY 93 (229)
T ss_dssp -SSCC
T ss_pred -CCcc
Confidence 4443
No 214
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=97.68 E-value=1e-05 Score=85.46 Aligned_cols=72 Identities=13% Similarity=0.022 Sum_probs=47.0
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcC----CCCcchHHHHHHHHHHhcCCCC
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDR----EERPDVDKVYMTYVQALYGGGG 203 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~----ee~pd~~~~y~~~~q~~~g~~G 203 (725)
+.+++.|+.-++..++.|+++||+.|+.|+. .|+. +.+.+-.|++|. +++|++.+.| ++.|
T Consensus 187 ~~~~~la~~l~~~~vV~F~A~WC~~Ck~l~p-~le~------lA~~l~~Vd~d~~d~~~~~~~la~~~--------gI~~ 251 (291)
T 3kp9_A 187 PLAVGLAAHLRQIGGTMYGAYWCPHCQDQKE-LFGA------AFDQVPYVECSPNGPGTPQAQECTEA--------GITS 251 (291)
T ss_dssp STHHHHHHHHHHTTCEEEECTTCHHHHHHHH-HHGG------GGGGSCEEESCSSCSSSCCCHHHHTT--------TCCS
T ss_pred HHHHHHHHHhCCCCEEEEECCCCHHHHHHHH-HHHH------HHHHcCEEEEeecCchhhHHHHHHHc--------CCcc
Confidence 4455555555555589999999999999973 3432 123344556653 3367666554 8999
Q ss_pred cCcEEEecCCCCcc
Q 004888 204 WPLSVFLSPDLKPL 217 (725)
Q Consensus 204 ~P~~vfl~pdG~~i 217 (725)
+||+++ +|+++
T Consensus 252 vPT~~i---~G~~~ 262 (291)
T 3kp9_A 252 YPTWII---NGRTY 262 (291)
T ss_dssp TTEEEE---TTEEE
T ss_pred cCeEEE---CCEEe
Confidence 999554 78764
No 215
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Probab=97.68 E-value=6.1e-05 Score=77.73 Aligned_cols=68 Identities=10% Similarity=0.106 Sum_probs=51.5
Q ss_pred HHHHhhcCCcEEEEEe--ccCChhhHhhhhhccCCHHHHHHHh---cCcEEEEEcCCC-----CcchHHHHHHHHHHhcC
Q 004888 131 FAEARKRDVPIFLSIG--YSTCHWCHVMEVESFEDEGVAKLLN---DWFVSIKVDREE-----RPDVDKVYMTYVQALYG 200 (725)
Q Consensus 131 l~~Ak~e~KpI~l~~g--~~wC~~C~~Me~e~f~d~eVa~~ln---~~FV~VkvD~ee-----~pd~~~~y~~~~q~~~g 200 (725)
|+..-..+++|||+|+ |+||+ |.. +| .++++.+. .+++.++||.++ ++++.+.| +
T Consensus 26 F~~vi~~~~~vlV~Fy~~ApWCg----l~P-~~--e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~--------~ 90 (248)
T 2c0g_A 26 FEKTVERFPYSVVKFDIASPYGE----KHE-AF--TAFSKSAHKATKDLLIATVGVKDYGELENKALGDRY--------K 90 (248)
T ss_dssp HHHHHTTSSEEEEEEEESSCCSH----HHH-HH--HHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHT--------T
T ss_pred HHHHHhcCCCEEEEEECCCCCCc----cHH-HH--HHHHHHHhccCCCeEEEEEECCcccccccHHHHHHh--------C
Confidence 3334467899999999 99998 542 33 35666663 368999999887 67776665 8
Q ss_pred CC--CcCcEEEecCCCC
Q 004888 201 GG--GWPLSVFLSPDLK 215 (725)
Q Consensus 201 ~~--G~P~~vfl~pdG~ 215 (725)
+. |+||++|+. |+
T Consensus 91 V~~~~~PTl~~F~--G~ 105 (248)
T 2c0g_A 91 VDDKNFPSIFLFK--GN 105 (248)
T ss_dssp CCTTSCCEEEEES--SS
T ss_pred CCcCCCCeEEEEe--CC
Confidence 99 999999996 77
No 216
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=97.67 E-value=3.4e-05 Score=73.08 Aligned_cols=80 Identities=15% Similarity=0.180 Sum_probs=48.3
Q ss_pred cCCcEEEEEeccCCh-hhHhhhhhccCCHHHHHHHhc---CcEEEEEcCC---CCcchHHHHHHH---------------
Q 004888 137 RDVPIFLSIGYSTCH-WCHVMEVESFEDEGVAKLLND---WFVSIKVDRE---ERPDVDKVYMTY--------------- 194 (725)
Q Consensus 137 e~KpI~l~~g~~wC~-~C~~Me~e~f~d~eVa~~ln~---~FV~VkvD~e---e~pd~~~~y~~~--------------- 194 (725)
.||+|+|.|+++||+ .|+.+..+. .++.+.+.+ ++..|-|+.+ +.++..+.|.+.
T Consensus 32 ~gk~vll~f~~~~C~~~C~~~~~~l---~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~ 108 (174)
T 1xzo_A 32 KGEVWLADFIFTNCETICPPMTAHM---TDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYS 108 (174)
T ss_dssp TTCCEEEEEECSCCSSCCCSHHHHH---HHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSC
T ss_pred CCCEEEEEEEcCCCcchhHHHHHHH---HHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCC
Confidence 589999999999999 998654321 234444443 2666666654 222222222110
Q ss_pred ---HHHh---------------cCCCCcCcEEEecCCCCcccc
Q 004888 195 ---VQAL---------------YGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 195 ---~q~~---------------~g~~G~P~~vfl~pdG~~i~~ 219 (725)
.+.+ +++.+.|+++++|++|+++..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~ 151 (174)
T 1xzo_A 109 QSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKD 151 (174)
T ss_dssp HHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEE
T ss_pred HHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEE
Confidence 0000 134568999999999999864
No 217
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=97.64 E-value=7.4e-05 Score=75.09 Aligned_cols=79 Identities=11% Similarity=0.046 Sum_probs=49.7
Q ss_pred cCCcEEEEEec-cCChhhHhhhhhccCCHHHHHHHh-cCcEEEEEcCCCCcchHHHHHHH--------------------
Q 004888 137 RDVPIFLSIGY-STCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTY-------------------- 194 (725)
Q Consensus 137 e~KpI~l~~g~-~wC~~C~~Me~e~f~d~eVa~~ln-~~FV~VkvD~ee~pd~~~~y~~~-------------------- 194 (725)
.||+|+|+|++ +||..|..+-.. + .++.+.+. +++..|-|..+...+. +.+.+.
T Consensus 68 ~Gk~vll~F~a~~wC~~C~~~~p~-l--~~l~~~~~~~~v~vv~Is~D~~~~~-~~~~~~~~~~~~~~~~~~~~l~D~~~ 143 (222)
T 3ztl_A 68 RGKYVVLFFYPADFTFVCPTEIIA-F--SDQVEEFNSRNCQVIACSTDSQYSH-LAWDNLDRKSGGLGHMKIPLLADRKQ 143 (222)
T ss_dssp TTSEEEEEECSCSSCSHHHHHHHH-H--HHTHHHHHTTTEEEEEEESSCHHHH-HHHHHSCGGGTSCCSCSSCEEECSSS
T ss_pred CCCeEEEEEECCCCCCchHHHHHH-H--HHHHHHHHHCCCEEEEEECCCHHHH-HHHHHHhhhhccccccceeEEeCCch
Confidence 68999999996 999999986521 1 12333333 3466666666532111 222111
Q ss_pred -HHHhcCCC------CcCcEEEecCCCCcccc
Q 004888 195 -VQALYGGG------GWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 195 -~q~~~g~~------G~P~~vfl~pdG~~i~~ 219 (725)
+...+++. ++|+++++|++|++++.
T Consensus 144 ~~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~ 175 (222)
T 3ztl_A 144 EISKAYGVFDEEDGNAFRGLFIIDPNGILRQI 175 (222)
T ss_dssp HHHHHTTCBCTTTSSBCEEEEEECTTSEEEEE
T ss_pred HHHHHcCCeecCCCCccceEEEECCCCeEEEE
Confidence 11224665 78999999999999875
No 218
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=97.63 E-value=0.00027 Score=66.43 Aligned_cols=79 Identities=8% Similarity=0.003 Sum_probs=49.4
Q ss_pred cCCcEEEEEec-cCChhhHhhhhhccCCHHHHHHHh-cCcEEEEEcCCCCcchHHHHHHHH--------------HHhcC
Q 004888 137 RDVPIFLSIGY-STCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTYV--------------QALYG 200 (725)
Q Consensus 137 e~KpI~l~~g~-~wC~~C~~Me~e~f~d~eVa~~ln-~~FV~VkvD~ee~pd~~~~y~~~~--------------q~~~g 200 (725)
.||+++|.|++ +||+.|...-.. + .++.+.+. +++..|-|..+ .++..+.|.+.. ...+|
T Consensus 34 ~gk~~vl~F~~~~~c~~C~~~~~~-l--~~~~~~~~~~~~~vv~vs~d-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 109 (163)
T 3gkn_A 34 AGHWLVIYFYPKDSTPGATTEGLD-F--NALLPEFDKAGAKILGVSRD-SVKSHDNFCAKQGFAFPLVSDGDEALCRAFD 109 (163)
T ss_dssp TTSCEEEEECSCTTSHHHHHHHHH-H--HHHHHHHHHTTCEEEEEESS-CHHHHHHHHHHHCCSSCEEECTTCHHHHHTT
T ss_pred CCCcEEEEEeCCCCCCcHHHHHHH-H--HHHHHHHHHCCCEEEEEeCC-CHHHHHHHHHHhCCCceEEECCcHHHHHHhC
Confidence 58999999998 999999976521 1 12223332 34666666655 343333443211 11235
Q ss_pred CCC------------cCcEEEecCCCCcccc
Q 004888 201 GGG------------WPLSVFLSPDLKPLMG 219 (725)
Q Consensus 201 ~~G------------~P~~vfl~pdG~~i~~ 219 (725)
+.+ .|+++++|++|+++..
T Consensus 110 v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~ 140 (163)
T 3gkn_A 110 VIKEKNMYGKQVLGIERSTFLLSPEGQVVQA 140 (163)
T ss_dssp CEEEEEETTEEEEEECCEEEEECTTSCEEEE
T ss_pred CccccccccccccCcceEEEEECCCCeEEEE
Confidence 444 8999999999999865
No 219
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*
Probab=97.59 E-value=0.00012 Score=71.58 Aligned_cols=79 Identities=8% Similarity=-0.070 Sum_probs=49.7
Q ss_pred cCCcEEEEEe-ccCChhhHhhhhhccCCHHHHHHHh-cCcEEEEEcCCCCcchHHHHHH---------------------
Q 004888 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMT--------------------- 193 (725)
Q Consensus 137 e~KpI~l~~g-~~wC~~C~~Me~e~f~d~eVa~~ln-~~FV~VkvD~ee~pd~~~~y~~--------------------- 193 (725)
.||+|+|.|+ ++||+.|+.+... + .++.+.+. +++..|-|+.+...+. +.|++
T Consensus 33 ~gk~vvl~F~~a~~C~~C~~~~~~-l--~~l~~~~~~~~v~vv~Is~d~~~~~-~~~~~~~~~~~~~~~~~~p~l~D~~~ 108 (197)
T 1qmv_A 33 KGKYVVLFFYPLDFTFVAPTEIIA-F--SNRAEDFRKLGCEVLGVSVDSQFTH-LAWINTPRKEGGLGPLNIPLLADVTR 108 (197)
T ss_dssp TTSEEEEEECSCTTSSHHHHHHHH-H--HHTHHHHHTTTEEEEEEESSCHHHH-HHHHTSCGGGTCCCSCSSCEEECTTC
T ss_pred CCCeEEEEEECCCCCCCCHHHHHH-H--HHHHHHHHHCCCEEEEEECCCHHHH-HHHHHHHHhhCCCCCCceEEEECCcH
Confidence 5899999999 9999999987542 2 23333343 3566666666531111 11111
Q ss_pred HHHHhcCCC------CcCcEEEecCCCCcccc
Q 004888 194 YVQALYGGG------GWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 194 ~~q~~~g~~------G~P~~vfl~pdG~~i~~ 219 (725)
.+...+|+. ++|+++++|++|+++..
T Consensus 109 ~~~~~~gv~~~~~~~~~P~~~lid~~G~i~~~ 140 (197)
T 1qmv_A 109 RLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQI 140 (197)
T ss_dssp HHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHHHHcCCccCCCCceeeEEEEECCCCcEEEE
Confidence 011123655 79999999999998865
No 220
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=97.56 E-value=0.0001 Score=83.47 Aligned_cols=77 Identities=17% Similarity=0.095 Sum_probs=57.0
Q ss_pred HHHHHHHhhcCC-cEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCc
Q 004888 128 EEAFAEARKRDV-PIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (725)
Q Consensus 128 ~eAl~~Ak~e~K-pI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~ 206 (725)
++.+++.++.++ +.++.|+++||++|+.|.. .++ +++. .+.+....+||.++.|++.+.| ++.++|+
T Consensus 106 ~~~~~~i~~~~~~~~i~~f~a~~C~~C~~~~~-~l~--~~a~-~~~~v~~~~vd~~~~~~~~~~~--------~i~svPt 173 (521)
T 1hyu_A 106 QSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQ-ALN--LMAV-LNPRIKHTAIDGGTFQNEITER--------NVMGVPA 173 (521)
T ss_dssp HHHHHHHHHCCSCEEEEEEECTTCSSHHHHHH-HHH--HHHH-HCTTEEEEEEETTTCHHHHHHT--------TCCSSSE
T ss_pred HHHHHHHHhcCCCcceEEEECCCCcCcHHHHH-HHH--HHHh-HcCceEEEEEechhhHHHHHHh--------CCCccCE
Confidence 666666665544 5678889999999999874 221 2222 3446788899999999987776 8899999
Q ss_pred EEEecCCCCcccc
Q 004888 207 SVFLSPDLKPLMG 219 (725)
Q Consensus 207 ~vfl~pdG~~i~~ 219 (725)
+++ +|+++..
T Consensus 174 ~~i---~g~~~~~ 183 (521)
T 1hyu_A 174 VFV---NGKEFGQ 183 (521)
T ss_dssp EEE---TTEEEEE
T ss_pred EEE---CCEEEec
Confidence 987 8888754
No 221
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=97.54 E-value=0.00022 Score=71.32 Aligned_cols=24 Identities=17% Similarity=0.465 Sum_probs=21.2
Q ss_pred hcCCcEEEEEeccCChhhHhhhhh
Q 004888 136 KRDVPIFLSIGYSTCHWCHVMEVE 159 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~C~~Me~e 159 (725)
..+|++++.|+..||++|+.|+.+
T Consensus 84 ~~~k~~vv~F~d~~Cp~C~~~~~~ 107 (216)
T 1eej_A 84 PQEKHVITVFTDITCGYCHKLHEQ 107 (216)
T ss_dssp TTCCEEEEEEECTTCHHHHHHHTT
T ss_pred CCCCEEEEEEECCCCHHHHHHHHH
Confidence 467899999999999999999853
No 222
>2v8i_A Pectate lyase; periplasm, beta-elimination, pectin degradation; 1.50A {Yersinia enterocolitica} PDB: 2v8k_A* 2v8j_A
Probab=97.54 E-value=0.022 Score=62.59 Aligned_cols=302 Identities=16% Similarity=0.130 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceee----eccCCCccccc--cccc-cCcceEEechHHH
Q 004888 381 DQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS----AEDADSAETEG--ATRK-KEGAFYVWTSKEV 453 (725)
Q Consensus 381 DNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~Ggfys----a~DADs~~~~~--~~~~-~EGayY~wt~~Ei 453 (725)
.|--++.+++-.-.+|+||.|++.|.++.+|..+++.++.|.||| .+|=|....+| .|.. -|=++-.=-++=+
T Consensus 59 sQQN~lR~L~~LS~lTgd~~Y~q~A~~~~~yf~dh~vd~sGL~~WGGHrFi~L~tl~~eGP~~K~~VHELKhh~PyY~lm 138 (543)
T 2v8i_A 59 AQQNLMRVMSGLSQLSGDPRYQKRAEDIVRYHFQNYQDPSGLLYWGGHRFVDLKTLQPEGPSEKEMVHELKNAYPYYDLM 138 (543)
T ss_dssp GCHHHHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHSBCTTSCBSCSTTCEEETTTCCEECCCTTCCSBCCSSCCCCHHHH
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHcccCCCCceeecCceeEeccccCccCccccchhhHhhhcCchHHHH
Confidence 466788999999999999999999999999999999988899988 34444332322 2221 2322221122333
Q ss_pred HHHhhhh-HHHHHHHh----------cccCCCCcCCCC----CCCCCC--CC-CCcceeecc------CCchHHHHhcCC
Q 004888 454 EDILGEH-AILFKEHY----------YLKPTGNCDLSR----MSDPHN--EF-KGKNVLIEL------NDSSASASKLGM 509 (725)
Q Consensus 454 ~~~lg~~-~~l~~~~y----------~l~~~Gn~e~~~----~~dp~~--~f-~g~nvL~~~------~~~~~~a~~~g~ 509 (725)
.++-.+. ...++..| ++...|++.-.. .+||.+ .| +++..-.++ .+...+++..|=
T Consensus 139 ~~vdp~aT~rfi~afWnAHV~DW~~Ld~~RHG~Y~k~~~~~~f~dp~~~p~l~etkGLTFvNaG~DLiYaA~~l~~~~gd 218 (543)
T 2v8i_A 139 FSVDSDATARFIRGFWNAHVYDWRILETSRHGEYGKPMGALWESKFEQQPPFFATKGLSFLNAGNDLIYSASLLYKHQQD 218 (543)
T ss_dssp HHHCHHHHHHHHHHHHHHHEEETTTTEECSCBCTTCCCCCGGGSCCCCCCTTEEESSCCCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHcCHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCchhccCcccCCCccccCCceEeecCcHHHHHHHHHHHhCCc
Confidence 3333433 23334343 235566543221 123321 11 222111111 111112222221
Q ss_pred CHHHHHHHHHHHHHHHHhhhc--------------cCCCCCCCcchhhhc------------------------------
Q 004888 510 PLEKYLNILGECRRKLFDVRS--------------KRPRPHLDDKVIVSW------------------------------ 545 (725)
Q Consensus 510 ~~e~~~~~l~~~r~kL~~~R~--------------~R~~P~lDdKiitsW------------------------------ 545 (725)
+.....=+...++-...|. +|..|- ||+---||
T Consensus 219 --~~a~~W~k~L~~QYVlaR~p~TGl~vYQFssp~kr~~P~-dd~~t~S~~GDRAqRQFGPEfG~iA~EanvLFk~d~~p 295 (543)
T 2v8i_A 219 --QGALTWAKRLADQYVLPRDAKTGLGVYQFTQALKREEPT-DDADTHSKFGDRAQRQFGPEFGPTALEGNMMLKGRTST 295 (543)
T ss_dssp --HHHHHHHHHHHHHTTTTSCTTTCCCCSCSEEECCCSCCC-CTTCCCGGGCCHHHHHHHHHHCTTCCGGGEECTTHHHH
T ss_pred --hHHHHHHHHHHHHHhhccCCCCCCceeeecCccccCCCc-ccccccchhhhHHHhhhCcccchhhhhhcceeccCCcc
Confidence 1111111222233333443 354443 55444444
Q ss_pred ----HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC------
Q 004888 546 ----NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA------ 615 (725)
Q Consensus 546 ----Nal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~------ 615 (725)
|++|+.. .++-.++. .++.++.+.+....-.+..||++++.|.-.+.+|+...
T Consensus 296 l~~dn~La~l~---l~~~~~~~--------------d~~~l~W~i~gLka~~~yAYd~~~N~~~Pm~~dG~dltgy~l~R 358 (543)
T 2v8i_A 296 LYSENALMQLQ---LGKDLGPQ--------------GQDLLKWTVDGLKAFAKYAYNDQDNTFRPMIANGQDLSNYTLPR 358 (543)
T ss_dssp HHTHHHHHHHH---HHHHHGGG--------------GHHHHHHHHHHHHHHHHHHEETTTTEECCEETTSCBCTTEECSS
T ss_pred eeecCHHHHHH---HHHHhcCc--------------hHHHHHHHHHHHHHHHHHhhccCCCceeecccCCcCCcCccccc
Confidence 3333333 34444321 26889999888888788889999998876677765311
Q ss_pred -----------CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCC
Q 004888 616 -----------PGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDG 684 (725)
Q Consensus 616 -----------~~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~ 684 (725)
.+++-+-. ....++..|.+++|+...+.+..|+..+.--=++. .......+ +.
T Consensus 359 dGYYG~KGtvl~~~p~~~~-yll~~vra~~~s~D~~Lw~~~~~ma~~~~lgdi~~-------~~~~~~~~--------~~ 422 (543)
T 2v8i_A 359 DGYYGKKGTVLKPYKAGNE-FLISYARAYAIDNDPLLWKVARGIANDQGLGDIGT-------APGKEVKV--------NM 422 (543)
T ss_dssp CBTTBCTTCEECCEECCHH-HHHHHHHHHHHSCCHHHHHHHHHHHHHTTCEECTT-------BTTBSCEE--------CT
T ss_pred ccccCCCCCeeccccCCch-hhHHHHHHHHcCCCHHHHHHHHHHHhhCCccccCC-------CcCccccc--------cc
Confidence 12333334 45699999999999998888887765432111111 11111111 11
Q ss_pred CCCChHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 004888 685 AEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLY 721 (725)
Q Consensus 685 a~PS~Nsv~a~~LlrL~~~t~~~~~~~y~~~A~~~l~ 721 (725)
..+.....+..+|++|++.|+. +.|++.|+++=.
T Consensus 423 ~~~~~sp~lL~allEL~~atq~---~~~l~lA~~~g~ 456 (543)
T 2v8i_A 423 DTTNSDPYALFALLDLYHASQV---ADYRKLAEKIGD 456 (543)
T ss_dssp TCCCCCHHHHHHHHHHHHHHCC---HHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCC---HHHHHHHHHHHH
Confidence 2344446788899999999997 789998887643
No 223
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A
Probab=97.53 E-value=0.00018 Score=71.98 Aligned_cols=80 Identities=5% Similarity=-0.078 Sum_probs=49.8
Q ss_pred cCCcEEEEEe-ccCChhhHhhhhhccCCHHHHHHHh-cCcEEEEEcCCCCcchHHHHHH---------------------
Q 004888 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMT--------------------- 193 (725)
Q Consensus 137 e~KpI~l~~g-~~wC~~C~~Me~e~f~d~eVa~~ln-~~FV~VkvD~ee~pd~~~~y~~--------------------- 193 (725)
.||+|+|.|+ ++||+.|..+... |+ ++.+.+. +++..|-|..+. ++..+.|.+
T Consensus 51 ~gk~vvl~F~pa~~C~~C~~~~~~-l~--~l~~~~~~~~v~vv~Is~D~-~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~ 126 (213)
T 2i81_A 51 GKKYVLLYFYPLDFTFVCPSEIIA-LD--KALDAFHERNVELLGCSVDS-KYTHLAWKKTPLAKGGIGNIKHTLLSDITK 126 (213)
T ss_dssp TTCEEEEEECSCTTSSHHHHHHHH-HH--HTHHHHHHTTEEEEEEESSC-HHHHHHHHSSCGGGTCCCSCSSEEEECTTS
T ss_pred CCCeEEEEEEcCCCCCCCHHHHHH-HH--HHHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHhhCCccCCCceEEECCch
Confidence 5899999999 9999999987532 21 2223332 356666665542 221112211
Q ss_pred HHHHhcCCC-----CcCcEEEecCCCCccccc
Q 004888 194 YVQALYGGG-----GWPLSVFLSPDLKPLMGG 220 (725)
Q Consensus 194 ~~q~~~g~~-----G~P~~vfl~pdG~~i~~~ 220 (725)
.+...+|+. ++|+++++|++|++++..
T Consensus 127 ~~~~~ygv~~~~g~~~p~~~lID~~G~i~~~~ 158 (213)
T 2i81_A 127 SISKDYNVLFDDSVSLRAFVLIDMNGIVQHLL 158 (213)
T ss_dssp HHHHHTTCEETTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHHhCCccccCCcccEEEEECCCCEEEEEE
Confidence 011224666 799999999999998763
No 224
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase, hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp} PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A*
Probab=97.53 E-value=0.00085 Score=76.54 Aligned_cols=90 Identities=13% Similarity=0.158 Sum_probs=63.3
Q ss_pred hhcHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec---CCCCCCCCCc
Q 004888 543 VSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR---NGPSKAPGFL 619 (725)
Q Consensus 543 tsWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~---~g~~~~~~~l 619 (725)
|++++.++.|||.|++++++-+. .| -.++|+.|+++.+|+.++... ++.... .|.-...++.
T Consensus 242 t~~~~~~AAalA~as~vf~~~D~--~y--------A~~~L~~A~~~~~fa~~~~~~-----~~~~~~~~~~~~Y~~~~~~ 306 (537)
T 3gzk_A 242 YAATATFCAAMAHAALVYRPFDP--AL--------SSCCADAARRAYAWLGAHEMQ-----PFHNPDGILTGEYGDAELR 306 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCH--HH--------HHHHHHHHHHHHHHHHTSCCC-----CCCCCTTCCSCCCCCSCCH
T ss_pred CcHHHHHHHHHHHHHHhhcccCH--HH--------HHHHHHHHHHHHHHHHhcccc-----cccCCcccccCCcCCCccc
Confidence 56789999999999999986211 11 157999999999999876421 110000 0000113455
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004888 620 DDYAFLISGLLDLYEFGSGTKWLVWAIELQN 650 (725)
Q Consensus 620 eDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~ 650 (725)
|+ ++.|.++||++|||+.||+.|++...
T Consensus 307 De---l~wAA~~Ly~aTgd~~Yl~~a~~~~~ 334 (537)
T 3gzk_A 307 DE---LLWASCALLRMTGDSAWARVCEPLLD 334 (537)
T ss_dssp HH---HHHHHHHHHHHHCCGGGHHHHHHHHH
T ss_pred hH---HHHHHHHHHHHhCCHHHHHHHHHhhh
Confidence 55 78899999999999999999998765
No 225
>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*
Probab=97.45 E-value=0.00016 Score=68.54 Aligned_cols=76 Identities=12% Similarity=0.204 Sum_probs=48.8
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCC-cchHHHHHHHHHHhcCCCCcCc
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER-PDVDKVYMTYVQALYGGGGWPL 206 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~-pd~~~~y~~~~q~~~g~~G~P~ 206 (725)
.+.++.+.+.+ +|+| |+++||++|+.+.. +.+.++-.|..|.||.++. +++. ..+...+|+.++|+
T Consensus 39 ~~~~~~~i~~~-~Vvv-f~~~~Cp~C~~~k~-------~L~~~~i~~~~vdId~~~~~~~~~----~~L~~~~g~~tvP~ 105 (146)
T 2ht9_A 39 VNQIQETISDN-CVVI-FSKTSCSYCTMAKK-------LFHDMNVNYKVVELDLLEYGNQFQ----DALYKMTGERTVPR 105 (146)
T ss_dssp HHHHHHHHHHC-SEEE-EECTTCHHHHHHHH-------HHHHHTCCCEEEEGGGCTTHHHHH----HHHHHHHSCCCSCE
T ss_pred HHHHHHHhcCC-CEEE-EECCCChhHHHHHH-------HHHHcCCCeEEEECccCcCCHHHH----HHHHHHhCCCCcCe
Confidence 45566666555 4555 99999999999863 3344566788777776522 3322 22233458899998
Q ss_pred EEEecCCCCcccc
Q 004888 207 SVFLSPDLKPLMG 219 (725)
Q Consensus 207 ~vfl~pdG~~i~~ 219 (725)
+++ +|+.+.+
T Consensus 106 ifi---~G~~igG 115 (146)
T 2ht9_A 106 IFV---NGTFIGG 115 (146)
T ss_dssp EEE---TTEEEES
T ss_pred EEE---CCEEEeC
Confidence 754 6776644
No 226
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=97.40 E-value=0.00015 Score=69.34 Aligned_cols=103 Identities=18% Similarity=0.166 Sum_probs=57.5
Q ss_pred hhcCCcEEEEEe-ccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHH--------------HHhc
Q 004888 135 RKRDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYV--------------QALY 199 (725)
Q Consensus 135 k~e~KpI~l~~g-~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~--------------q~~~ 199 (725)
..+||+|+|.|+ ++||+.|...- -.|.+- ..++-++++..|-|..+ .|+..+.|.+.. ...+
T Consensus 30 ~~~Gk~vvl~f~~~~~cp~C~~e~-~~l~~~-~~~~~~~~v~vv~is~d-~~~~~~~~~~~~~~~fp~l~D~~~~v~~~y 106 (164)
T 4gqc_A 30 LKRGRPAVLIFFPAAFSPVCTKEL-CTFRDK-MAQLEKANAEVLAISVD-SPWCLKKFKDENRLAFNLLSDYNREVIKLY 106 (164)
T ss_dssp HHTSSCEEEEECSCTTCCEECSSC-EESCCC-GGGGGGSSSEEEEEESS-CHHHHHHHHHHTTCCSEEEECTTSHHHHHT
T ss_pred hcCCCEEEEEEeCCCCCCCcccch-hhhhhh-HHHhhccCceEEEecCC-CHHHHHHHHHhcCcccceeecCchHHHHHc
Confidence 457999999998 99999998532 233211 11222334555555544 233333332210 1112
Q ss_pred CCC----------CcCcEEEecCCCCccccc-cccCCCCCCCcchHHHHHHHHHHH
Q 004888 200 GGG----------GWPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKVKDA 244 (725)
Q Consensus 200 g~~----------G~P~~vfl~pdG~~i~~~-tY~p~~~~~~~~~F~~~L~~i~~~ 244 (725)
|+. ..|+++++|++|++.+.. +..| .+.+++-++|+.+.++
T Consensus 107 gv~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~----~~~~~~~eil~~l~~l 158 (164)
T 4gqc_A 107 NVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNP----LNEPDYDEVVREANKI 158 (164)
T ss_dssp TCEEEEETTEEEEECCEEEEECTTSBEEEEEECSCT----TCCCCHHHHHHHHHHH
T ss_pred CCcccccccCcCCeeeEEEEECCCCEEEEEEEeCCC----CCCCCHHHHHHHHHHH
Confidence 431 368899999999988652 2222 2345677777766543
No 227
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=97.39 E-value=0.00084 Score=66.00 Aligned_cols=21 Identities=19% Similarity=0.253 Sum_probs=18.9
Q ss_pred cCCcEEEEEeccCChh-hHhhh
Q 004888 137 RDVPIFLSIGYSTCHW-CHVME 157 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~-C~~Me 157 (725)
.||+|+|+|+++||+. |..+-
T Consensus 40 ~Gk~vlv~F~at~C~~vC~~~~ 61 (200)
T 2b7k_A 40 LGKFSIIYFGFSNCPDICPDEL 61 (200)
T ss_dssp TTSCEEEEEECTTCCSHHHHHH
T ss_pred CCCEEEEEEECCCCcchhHHHH
Confidence 5899999999999997 99765
No 228
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Probab=97.37 E-value=0.00033 Score=71.93 Aligned_cols=71 Identities=11% Similarity=0.182 Sum_probs=51.4
Q ss_pred HHHHHHhhcCCcEEEEEec--cCChhhHhhhhhccCCHHHHHHHh--cCcEEEEEcCCC-----CcchHHHHHHHHHHhc
Q 004888 129 EAFAEARKRDVPIFLSIGY--STCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREE-----RPDVDKVYMTYVQALY 199 (725)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~--~wC~~C~~Me~e~f~d~eVa~~ln--~~FV~VkvD~ee-----~pd~~~~y~~~~q~~~ 199 (725)
+-|+..-+.+++|||.|++ +||+ |. -+| .++++.+. .+++.++||+++ .+++.+.|
T Consensus 13 ~nF~~~i~~~~~vlV~FyA~~pWCg----l~-P~~--e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~-------- 77 (240)
T 2qc7_A 13 VTFYKVIPKSKFVLVKFDTQYPYGE----KQ-DEF--KRLAENSASSDDLLVAEVGISDYGDKLNMELSEKY-------- 77 (240)
T ss_dssp THHHHHGGGCSEEEEEECCSSCCSH----HH-HHH--HHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHT--------
T ss_pred HHHHHHHcCCCCEEEEEeCCCCCCc----ch-HHH--HHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHc--------
Confidence 3445455678999999999 9998 43 233 25666664 368999999654 67776655
Q ss_pred CCC--CcCcEEEecCCCC
Q 004888 200 GGG--GWPLSVFLSPDLK 215 (725)
Q Consensus 200 g~~--G~P~~vfl~pdG~ 215 (725)
++. ++||++|+ ++|+
T Consensus 78 ~V~~~~~PTl~~f-~~G~ 94 (240)
T 2qc7_A 78 KLDKESYPVFYLF-RDGD 94 (240)
T ss_dssp TCCGGGCSEEEEE-ETTC
T ss_pred CCCCCCCCEEEEE-eCCC
Confidence 899 99999999 5566
No 229
>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.35 E-value=0.00044 Score=63.80 Aligned_cols=76 Identities=12% Similarity=0.196 Sum_probs=47.6
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCC-cchHHHHHHHHHHhcCCCCcCc
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER-PDVDKVYMTYVQALYGGGGWPL 206 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~-pd~~~~y~~~~q~~~g~~G~P~ 206 (725)
.+.+..+.+.+ +|+| |+++||++|+.+.. +.+.++-.|..|.||.++. +++ +..+...+|+.++|+
T Consensus 17 ~~~~~~~i~~~-~vvv-f~~~~Cp~C~~~~~-------~L~~~~i~~~~vdid~~~~~~~~----~~~l~~~~g~~~vP~ 83 (130)
T 2cq9_A 17 VNQIQETISDN-CVVI-FSKTSCSYCTMAKK-------LFHDMNVNYKVVELDLLEYGNQF----QDALYKMTGERTVPR 83 (130)
T ss_dssp HHHHHHHHHHS-SEEE-EECSSCSHHHHHHH-------HHHHHTCCCEEEETTTSTTHHHH----HHHHHHHHSSCCSSE
T ss_pred HHHHHHHHcCC-cEEE-EEcCCChHHHHHHH-------HHHHcCCCcEEEECcCCcCcHHH----HHHHHHHhCCCCcCE
Confidence 45566665555 4555 89999999999873 3344556787776665422 332 222233458899998
Q ss_pred EEEecCCCCcccc
Q 004888 207 SVFLSPDLKPLMG 219 (725)
Q Consensus 207 ~vfl~pdG~~i~~ 219 (725)
+++ +|+.+.+
T Consensus 84 l~i---~G~~igg 93 (130)
T 2cq9_A 84 IFV---NGTFIGG 93 (130)
T ss_dssp EEE---TTEEEEE
T ss_pred EEE---CCEEEcC
Confidence 754 6776533
No 230
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=97.33 E-value=0.00059 Score=65.54 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=28.1
Q ss_pred cCCcEEEEEeccCCh-hhHhhhhhccCCHHHHHHHh---cC--cEEEEEcC
Q 004888 137 RDVPIFLSIGYSTCH-WCHVMEVESFEDEGVAKLLN---DW--FVSIKVDR 181 (725)
Q Consensus 137 e~KpI~l~~g~~wC~-~C~~Me~e~f~d~eVa~~ln---~~--FV~VkvD~ 181 (725)
.||+|+|+|++.||+ ||..+-.+. +++.+.+. .+ ||.|-||-
T Consensus 31 ~Gk~vll~F~~t~Cp~~Cp~~~~~l---~~l~~~~~~~~~~v~~v~isvDp 78 (170)
T 4hde_A 31 KGKVWVADFMFTNCQTVCPPMTANM---AKLQKMAKEEKLDVQFVSFSVDP 78 (170)
T ss_dssp TTSCEEEEEECTTCSSSHHHHHHHH---HHHHHHHHHTTCCCEEEEEESCT
T ss_pred CCCEEEEEEECCCCCCcccHHHHHH---HHHHHhhhcccccceeEeeecCc
Confidence 699999999999996 897654322 34444443 23 46666664
No 231
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Probab=97.32 E-value=0.00039 Score=69.45 Aligned_cols=23 Identities=26% Similarity=0.613 Sum_probs=20.7
Q ss_pred hcCCcEEEEEeccCChhhHhhhh
Q 004888 136 KRDVPIFLSIGYSTCHWCHVMEV 158 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~C~~Me~ 158 (725)
..+|++++.|+..||++|+.++.
T Consensus 84 ~~~k~~vv~F~d~~Cp~C~~~~~ 106 (211)
T 1t3b_A 84 KNEKHVVTVFMDITCHYCHLLHQ 106 (211)
T ss_dssp TTCSEEEEEEECTTCHHHHHHHT
T ss_pred CCCCEEEEEEECCCCHhHHHHHH
Confidence 36788999999999999999985
No 232
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=97.29 E-value=0.00085 Score=65.33 Aligned_cols=43 Identities=23% Similarity=0.099 Sum_probs=29.9
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCC
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE 182 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~e 182 (725)
.+|++++.|+..||++|+.|+... +++.+.+.++.+.+.+++.
T Consensus 24 ~~~~~vv~f~d~~Cp~C~~~~~~l---~~l~~~~~~~v~~~~~~~~ 66 (195)
T 3hd5_A 24 PGKIEVLEFFAYTCPHCAAIEPMV---EDWAKTAPQDVVLKQVPIA 66 (195)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHH---HHHHHTCCTTEEEEEEECC
T ss_pred CCCeEEEEEECCCCccHHHhhHHH---HHHHHHCCCCeEEEEEecc
Confidence 478999999999999999998422 3343333335666666654
No 233
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=97.28 E-value=0.00024 Score=59.37 Aligned_cols=66 Identities=20% Similarity=0.146 Sum_probs=39.4
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcC--CCCcCcEEEecCCCCccc
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYG--GGGWPLSVFLSPDLKPLM 218 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g--~~G~P~~vfl~pdG~~i~ 218 (725)
++.|+++||++|+.+.. .++ ++++. ..++..+++|+++.++..+.+ ...+| +.++|+++ + +|+.+.
T Consensus 3 v~~f~~~~C~~C~~~~~-~l~--~l~~~-~~~i~~~~vdi~~~~~~~~~l----~~~~~~~~~~vP~i~-~--~g~~i~ 70 (85)
T 1ego_A 3 TVIFGRSGCPYCVRAKD-LAE--KLSNE-RDDFQYQYVDIRAEGITKEDL----QQKAGKPVETVPQIF-V--DQQHIG 70 (85)
T ss_dssp EEEECCTTSTHHHHHHH-HHH--HHHHH-HSSCEEEEECHHHHTCCSHHH----HHHTCCCSCCSCEEE-E--TTEEEE
T ss_pred EEEEeCCCCCCHHHHHH-HHH--HHHhc-CCCceEEEEecccChHHHHHH----HHHhCCCCceeCeEE-E--CCEEEE
Confidence 56789999999999874 232 12222 135777778876543211111 11236 78999974 4 677663
No 234
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=97.27 E-value=0.00037 Score=70.26 Aligned_cols=79 Identities=8% Similarity=-0.077 Sum_probs=45.9
Q ss_pred cCCcEEEEEe-ccCChhhHhhhhhccCCHHHHHHHh-cCcEEEEEcCCCCcchHHHHHHHH-------------------
Q 004888 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTYV------------------- 195 (725)
Q Consensus 137 e~KpI~l~~g-~~wC~~C~~Me~e~f~d~eVa~~ln-~~FV~VkvD~ee~pd~~~~y~~~~------------------- 195 (725)
.||+|+|+|+ ++||+.|...-.. +. ++.+.+. +++..|-|..+. ++..+.|.+..
T Consensus 55 ~Gk~vvl~F~patwCp~C~~e~p~-l~--~l~~~~~~~~v~vv~Is~D~-~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~ 130 (221)
T 2c0d_A 55 GQKYCCLLFYPLNYTFVCPTEIIE-FN--KHIKDFENKNVELLGISVDS-VYSHLAWKNMPIEKGGIGNVEFTLVSDINK 130 (221)
T ss_dssp TTCEEEEEECCCCTTTCCHHHHHH-HH--HTHHHHHHTTEEEEEEESSC-HHHHHHHHHSCGGGTCCCSCSSEEEECTTS
T ss_pred CCCeEEEEEEcCCCCCchHHHHHH-HH--HHHHHHHHCCCEEEEEeCCC-HHHHHHHHHHhhhhcCccCCceEEEECCch
Confidence 5899999999 9999999865421 11 1222222 345555554432 22122222111
Q ss_pred --HHhcCC-----CCcCcEEEecCCCCcccc
Q 004888 196 --QALYGG-----GGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 196 --q~~~g~-----~G~P~~vfl~pdG~~i~~ 219 (725)
...+|+ ..+|+++++|++|++++.
T Consensus 131 ~~~~~ygv~~~~g~~~P~~~lID~~G~I~~~ 161 (221)
T 2c0d_A 131 DISKNYNVLYDNSFALRGLFIIDKNGCVRHQ 161 (221)
T ss_dssp HHHHHTTCEETTTEECEEEEEECTTSBEEEE
T ss_pred HHHHHcCCcccCCCccceEEEECCCCeEEEE
Confidence 111354 257999999999999875
No 235
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=97.24 E-value=0.00018 Score=68.14 Aligned_cols=99 Identities=16% Similarity=0.149 Sum_probs=51.3
Q ss_pred cCCcEEEEEe-ccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHH--------------HHhcCC
Q 004888 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYV--------------QALYGG 201 (725)
Q Consensus 137 e~KpI~l~~g-~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~--------------q~~~g~ 201 (725)
.||+|+|.|+ ++||+.|...-. .|.+ ...++-+.+++.|-|..+. |+..+.|.+.. ...+|+
T Consensus 29 ~Gk~vvl~f~~~~~c~~C~~e~~-~l~~-~~~~~~~~~~~~v~vs~d~-~~~~~~~~~~~~~~~p~l~D~~~~v~~~ygv 105 (157)
T 4g2e_A 29 KGKVVVLAFYPAAFTQVCTKEMC-TFRD-SMAKFNQVNAVVLGISVDP-PFSNKAFKEHNKLNFTILSDYNREVVKKYNV 105 (157)
T ss_dssp TTSCEEEEECSCTTCCC-------CCSC-GGGGGGGCSSEEEEEESSC-HHHHHHHHHHTTCCSEEEECTTSHHHHHTTC
T ss_pred CCCeEEEEecCCCCCCccccchh-hccc-ccccccccCceEeeecccc-hhHHHHHHHHcCCcEEEEEcCCcHHHHHcCC
Confidence 5899999998 999999986432 3321 1112223456666666543 33333332211 011232
Q ss_pred C-----------CcCcEEEecCCCCccccc-cccCCCCCCCcchHHHHHHHHH
Q 004888 202 G-----------GWPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKVK 242 (725)
Q Consensus 202 ~-----------G~P~~vfl~pdG~~i~~~-tY~p~~~~~~~~~F~~~L~~i~ 242 (725)
. ..|+++++|++|++.+.. +..+. +.+.+-++++.|.
T Consensus 106 ~~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~----~~~~~~eil~~l~ 154 (157)
T 4g2e_A 106 AWEFPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPT----KEPPYDEIEKVVK 154 (157)
T ss_dssp EEECTTSTTCEEECEEEEEECTTSBEEEEEEESSTT----CCCCHHHHHHHHH
T ss_pred ccccccCCCcceeeeeEEEECCCCEEEEEEECCCCC----CCCCHHHHHHHHH
Confidence 1 357889999999987653 22222 2345656665554
No 236
>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*
Probab=97.21 E-value=0.00093 Score=58.35 Aligned_cols=73 Identities=12% Similarity=0.176 Sum_probs=43.2
Q ss_pred HHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcC---cEEEEEcCCCC-cchHHHHHHHHHHhcCCCCcC
Q 004888 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW---FVSIKVDREER-PDVDKVYMTYVQALYGGGGWP 205 (725)
Q Consensus 130 Al~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~---FV~VkvD~ee~-pd~~~~y~~~~q~~~g~~G~P 205 (725)
-++...++++ ++.|+++||++|+.+.. +.+.++.. |..|.||.+.. ++.. ..+...+|..++|
T Consensus 4 ~~~~~i~~~~--v~~f~~~~C~~C~~~~~-------~L~~~~~~~~~~~~vdi~~~~~~~~~~----~~l~~~~g~~~vP 70 (105)
T 1kte_A 4 FVNSKIQPGK--VVVFIKPTCPFCRKTQE-------LLSQLPFKEGLLEFVDITATSDTNEIQ----DYLQQLTGARTVP 70 (105)
T ss_dssp HHHHHCCTTC--EEEEECSSCHHHHHHHH-------HHHHSCBCTTSEEEEEGGGSTTHHHHH----HHHHHHHSCCCSC
T ss_pred HHHhhcccCC--EEEEEcCCCHhHHHHHH-------HHHHcCCCCCccEEEEccCCCCHHHHH----HHHHHHhCCCCcC
Confidence 3455554444 56689999999999863 33334444 77766665421 2221 2222335888999
Q ss_pred cEEEecCCCCccc
Q 004888 206 LSVFLSPDLKPLM 218 (725)
Q Consensus 206 ~~vfl~pdG~~i~ 218 (725)
+++ + +|+.+.
T Consensus 71 ~i~-~--~g~~i~ 80 (105)
T 1kte_A 71 RVF-I--GKECIG 80 (105)
T ss_dssp EEE-E--TTEEEE
T ss_pred eEE-E--CCEEEe
Confidence 974 4 677653
No 237
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=97.21 E-value=0.00091 Score=63.78 Aligned_cols=30 Identities=13% Similarity=0.218 Sum_probs=24.2
Q ss_pred hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHh
Q 004888 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN 171 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln 171 (725)
..+|++++.|+..||++|+.++ |.+.+++.
T Consensus 20 ~~a~v~i~~f~d~~Cp~C~~~~------~~l~~l~~ 49 (175)
T 3gyk_A 20 PEGDVTVVEFFDYNCPYCRRAM------AEVQGLVD 49 (175)
T ss_dssp TTCSEEEEEEECTTCHHHHHHH------HHHHHHHH
T ss_pred CCCCEEEEEEECCCCccHHHHH------HHHHHHHH
Confidence 4578899999999999999998 45656554
No 238
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=97.21 E-value=0.00044 Score=65.59 Aligned_cols=96 Identities=14% Similarity=0.059 Sum_probs=55.6
Q ss_pred cCCcEEEEEe-ccCChhhHhhhhhccCCHHHHHHHh-cCcEEEEEcCCCCcchHHHHHHHHH----------------Hh
Q 004888 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTYVQ----------------AL 198 (725)
Q Consensus 137 e~KpI~l~~g-~~wC~~C~~Me~e~f~d~eVa~~ln-~~FV~VkvD~ee~pd~~~~y~~~~q----------------~~ 198 (725)
.||+++|.|+ +.||+.|...- |++.++.. +++..|-|..+. ++..+.|.+... ..
T Consensus 45 ~Gk~vvl~f~~~~~c~~C~~~~------~~l~~~~~~~~~~vv~is~d~-~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 117 (166)
T 3p7x_A 45 AGKKKLISVVPSIDTGVCDQQT------RKFNSDASKEEGIVLTISADL-PFAQKRWCASAGLDNVITLSDHRDLSFGEN 117 (166)
T ss_dssp TTSCEEEEECSCTTSHHHHHHH------HHHHHHSCTTTSEEEEEESSC-HHHHHHHHHHHTCSSCEEEECTTTCHHHHH
T ss_pred CCCcEEEEEECCCCCCccHHHH------HHHHHHhhcCCCEEEEEECCC-HHHHHHHHHHcCCCceEEccCCchhHHHHH
Confidence 5899999998 78999998643 34444443 345555555442 222222322111 11
Q ss_pred cCCCC------cCcEEEecCCCCccccccccCCCCCCCcchHHHHHHHHH
Q 004888 199 YGGGG------WPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (725)
Q Consensus 199 ~g~~G------~P~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i~ 242 (725)
+|+.+ .|+++++|++|++++.....+. ...+.+-++|+.|.
T Consensus 118 ~gv~~~~~g~~~p~~~liD~~G~i~~~~~~~~~---~~~~~~~~il~~l~ 164 (166)
T 3p7x_A 118 YGVVMEELRLLARAVFVLDADNKVVYKEIVSEG---TDFPDFDAALAAYK 164 (166)
T ss_dssp HTCEETTTTEECCEEEEECTTCBEEEEEECSBT---TSCCCHHHHHHHHH
T ss_pred hCCccccCCceeeEEEEECCCCeEEEEEEcCCc---ccCCCHHHHHHHHh
Confidence 24433 7999999999998865211111 12346677777664
No 239
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=97.17 E-value=0.0014 Score=66.70 Aligned_cols=71 Identities=14% Similarity=0.057 Sum_probs=52.7
Q ss_pred HHHHH-HHhhcCCcEEEEEeccC--ChhhHhhhhhccCCHHHHHHHhcC------cEEEEEcCCCCcchHHHHHHHHHHh
Q 004888 128 EEAFA-EARKRDVPIFLSIGYST--CHWCHVMEVESFEDEGVAKLLNDW------FVSIKVDREERPDVDKVYMTYVQAL 198 (725)
Q Consensus 128 ~eAl~-~Ak~e~KpI~l~~g~~w--C~~C~~Me~e~f~d~eVa~~ln~~------FV~VkvD~ee~pd~~~~y~~~~q~~ 198 (725)
.+.|+ .-++-++||.|.|+++| |.+|+.|.. .+ +++++.. .. ...+++|.++.+++.+.|
T Consensus 14 ~~ql~~~~~~~~~pv~v~~~~~~~~c~~c~~~~~-~l--~ela~~~-~~~~~~~~v~~~~vd~d~~~~~~~~~------- 82 (243)
T 2hls_A 14 RRELRETLAEMVNPVEVHVFLSKSGCETCEDTLR-LM--KLFEEES-PTRNGGKLLKLNVYYRESDSDKFSEF------- 82 (243)
T ss_dssp HHHHHHHHTTCCSCEEEEEEECSSSCTTHHHHHH-HH--HHHHHHS-CEETTEESEEEEEEETTTTHHHHHHT-------
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCCCCCchHHHHH-HH--HHHHHhc-cCCCCCceeEEEEecCCcCHHHHHhc-------
Confidence 34443 33567799999999999 999999963 22 2455443 22 666789999888887666
Q ss_pred cCCCCcCcEEEe
Q 004888 199 YGGGGWPLSVFL 210 (725)
Q Consensus 199 ~g~~G~P~~vfl 210 (725)
|+.++|+++|+
T Consensus 83 -gv~~~Pt~~i~ 93 (243)
T 2hls_A 83 -KVERVPTVAFL 93 (243)
T ss_dssp -TCCSSSEEEET
T ss_pred -CCCcCCEEEEE
Confidence 88899999998
No 240
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Probab=97.16 E-value=0.00015 Score=73.94 Aligned_cols=31 Identities=13% Similarity=0.234 Sum_probs=24.4
Q ss_pred hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc
Q 004888 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND 172 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~ 172 (725)
..+|.+++.|+..||++|++++. ++.+++++
T Consensus 95 ~~ak~~v~~F~D~~Cp~C~~~~~------~l~~~~~~ 125 (241)
T 1v58_A 95 KDAPVIVYVFADPFCPYCKQFWQ------QARPWVDS 125 (241)
T ss_dssp TTCSEEEEEEECTTCHHHHHHHH------HHHHHHHT
T ss_pred CCCCeEEEEEECCCChhHHHHHH------HHHHHHhC
Confidence 35677899999999999999985 45556654
No 241
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A
Probab=97.16 E-value=0.0062 Score=67.65 Aligned_cols=89 Identities=16% Similarity=0.202 Sum_probs=58.7
Q ss_pred hcHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC--CCCCCcch
Q 004888 544 SWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDD 621 (725)
Q Consensus 544 sWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~--~~~~~leD 621 (725)
+-.+.++.+||.|++++++.+ ..| -.++|+.|+++.+|..++- |.+..+..++.. ...++.+
T Consensus 150 ~~a~~~AAalA~as~vfk~~D--~~y--------A~~~L~~A~~~~~fa~~~~-----~~y~~~~~~~~~~Y~ss~~~D- 213 (433)
T 1ks8_A 150 DLAGETAAALAAASIVFRNVD--GTY--------SNNLLTHARQLFDFANNYR-----GKYSDSITDARNFYASADYRD- 213 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTTTC--HHH--------HHHHHHHHHHHHHHHHHSC-----CCHHHHSGGGGGTSCCCCTHH-
T ss_pred HHHHHHHHHHHHHHHhccccC--HHH--------HHHHHHHHHHHHHHHHHCC-----CcccCCCCcCCCCCCCCCccc-
Confidence 345888999999999998632 112 2578999999999988752 111000000000 0123333
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004888 622 YAFLISGLLDLYEFGSGTKWLVWAIELQN 650 (725)
Q Consensus 622 yA~li~aLL~LYe~Tgd~~yL~~A~~L~~ 650 (725)
.++.|.+.||.+|||+.|++.|++...
T Consensus 214 --E~~WAAa~Ly~aTgd~~Yl~~~~~~~~ 240 (433)
T 1ks8_A 214 --ELVWAAAWLYRATNDNTYLNTAESLYD 240 (433)
T ss_dssp --HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 457889999999999999999998654
No 242
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase; 1.90A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2
Probab=97.16 E-value=0.0067 Score=70.54 Aligned_cols=89 Identities=8% Similarity=0.039 Sum_probs=58.6
Q ss_pred hcHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCC--CCCCCcc
Q 004888 544 SWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPS--KAPGFLD 620 (725)
Q Consensus 544 sWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~-~~g~~--~~~~~le 620 (725)
.-.+-++.|||.|++++++.+ ..| -.++|+.|+++.+|..++- |..+... ..+.. ...++.
T Consensus 287 ~~a~e~AAAlAaAS~vfk~~D--~~y--------A~~~L~~Ak~l~~fA~~~~-----~~~y~~~~~~~~g~Y~ss~~~- 350 (639)
T 1clc_A 287 AATADFVAMTAMAARIFRPYD--PQY--------AEKCINAAKVSYEFLKNNP-----ANVFANQSGFSTGEYATVSDA- 350 (639)
T ss_dssp HHHHHHHHHHHHHHHHHTTTC--HHH--------HHHHHHHHHHHHHHHHHCC-----SCCCCCCTTCCSCCCCCSCSH-
T ss_pred HHHHHHHHHHHHHHHhccccC--HHH--------HHHHHHHHHHHHHHHHHcC-----CCccCCCccccccccCCCCcc-
Confidence 345778999999999997522 112 2578999999999998753 1111000 00000 112333
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004888 621 DYAFLISGLLDLYEFGSGTKWLVWAIELQN 650 (725)
Q Consensus 621 DyA~li~aLL~LYe~Tgd~~yL~~A~~L~~ 650 (725)
-.+++|.+.||.+|||..|++.|++...
T Consensus 351 --DEl~WAAawLy~ATgd~~Yl~~a~~~~~ 378 (639)
T 1clc_A 351 --DDRLWAAAEMWETLGDEEYLRDFENRAA 378 (639)
T ss_dssp --HHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4458889999999999999999988654
No 243
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10
Probab=97.11 E-value=0.0012 Score=62.26 Aligned_cols=96 Identities=16% Similarity=0.036 Sum_probs=50.9
Q ss_pred cCCcEEEEEec-cCChhhHhhhhhccCCHHHHHHHh--cCcEEEEEcCCCCcchHHHHHHHHH----------------H
Q 004888 137 RDVPIFLSIGY-STCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVYMTYVQ----------------A 197 (725)
Q Consensus 137 e~KpI~l~~g~-~wC~~C~~Me~e~f~d~eVa~~ln--~~FV~VkvD~ee~pd~~~~y~~~~q----------------~ 197 (725)
.||+++|.|++ +||+.|...- |++.++.+ +++..|-|..+. ++..+.|.+... .
T Consensus 41 ~gk~vvl~F~~~~~c~~C~~~~------~~l~~~~~~~~~v~vv~is~d~-~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 113 (163)
T 1psq_A 41 DGKKKVLSVVPSIDTGICSTQT------RRFNEELAGLDNTVVLTVSMDL-PFAQKRWCGAEGLDNAIMLSDYFDHSFGR 113 (163)
T ss_dssp TTSEEEEEECSCTTSHHHHHHH------HHHHHHTTTCTTEEEEEEESSC-HHHHHHHHHHHTCTTSEEEECTTTCHHHH
T ss_pred CCCEEEEEEECCCCCCccHHHH------HHHHHHHHHcCCcEEEEEECCC-HHHHHHHHHhcCCCCcEEecCCchhHHHH
Confidence 58999999995 9999998643 23333222 233333333321 111111211110 0
Q ss_pred hcCCC----Cc--CcEEEecCCCCccccccccCCCCCCCcchHHHHHHHHH
Q 004888 198 LYGGG----GW--PLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (725)
Q Consensus 198 ~~g~~----G~--P~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i~ 242 (725)
.+|+. |. |+++++|++|++++......+ ...+.+.++|+.|.
T Consensus 114 ~~gv~~~~~g~~~p~~~liD~~G~i~~~~~g~~~---~~~~~~~~~l~~l~ 161 (163)
T 1psq_A 114 DYALLINEWHLLARAVFVLDTDNTIRYVEYVDNI---NSEPNFEAAIAAAK 161 (163)
T ss_dssp HHTCBCTTTCSBCCEEEEECTTCBEEEEEECSBT---TSCCCHHHHHHHHH
T ss_pred HhCCccccCCceEEEEEEEcCCCeEEEEEecCCc---CCCCCHHHHHHHHH
Confidence 12433 43 999999999998865321111 12345667776665
No 244
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=97.10 E-value=0.0016 Score=62.87 Aligned_cols=79 Identities=6% Similarity=-0.023 Sum_probs=47.3
Q ss_pred cCCcEEEEEe-ccCChhhHhhhhhccCCHHHHHHHh-cCcEEEEEcCCCCcchHHHHHHHH--------------HHhcC
Q 004888 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTYV--------------QALYG 200 (725)
Q Consensus 137 e~KpI~l~~g-~~wC~~C~~Me~e~f~d~eVa~~ln-~~FV~VkvD~ee~pd~~~~y~~~~--------------q~~~g 200 (725)
.||+|+|.|+ ++||..|...-. .+ .++.+.+. +++..|-|..+. ++..+.|.+.. ...+|
T Consensus 50 ~Gk~vvl~f~~~~~c~~C~~el~-~l--~~l~~~~~~~~~~vv~Vs~D~-~~~~~~~~~~~~~~f~~l~D~~~~~~~~~g 125 (179)
T 3ixr_A 50 TNQWLVLYFYPKDNTPGSSTEGL-EF--NLLLPQFEQINATVLGVSRDS-VKSHDSFCAKQGFTFPLVSDSDAILCKAFD 125 (179)
T ss_dssp TTSEEEEEECSCTTSHHHHHHHH-HH--HHHHHHHHTTTEEEEEEESCC-HHHHHHHHHHHTCCSCEEECTTCHHHHHTT
T ss_pred CCCCEEEEEEcCCCCCchHHHHH-HH--HHHHHHHHHCCCEEEEEcCCC-HHHHHHHHHHcCCceEEEECCchHHHHHcC
Confidence 5899999998 999999986542 11 13333333 346666666653 33333332211 11124
Q ss_pred CCC------------cCcEEEecCCCCcccc
Q 004888 201 GGG------------WPLSVFLSPDLKPLMG 219 (725)
Q Consensus 201 ~~G------------~P~~vfl~pdG~~i~~ 219 (725)
+.+ .|+++++|++|+++..
T Consensus 126 v~~~~~~~g~~~~~~~p~~~lID~~G~I~~~ 156 (179)
T 3ixr_A 126 VIKEKTMYGRQVIGIERSTFLIGPTHRIVEA 156 (179)
T ss_dssp CEEEECCC--CEEEECCEEEEECTTSBEEEE
T ss_pred CcccccccCcccCCcceEEEEECCCCEEEEE
Confidence 321 5889999999998865
No 245
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=97.07 E-value=0.001 Score=64.61 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=20.0
Q ss_pred cCCcEEEEEeccCChhhHhhhh
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEV 158 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~ 158 (725)
.+|++++.|+..||++|+.++.
T Consensus 24 ~~~~~i~~f~d~~Cp~C~~~~~ 45 (192)
T 3h93_A 24 PGKIEVVELFWYGCPHCYAFEP 45 (192)
T ss_dssp TTSEEEEEEECTTCHHHHHHHH
T ss_pred CCCCEEEEEECCCChhHHHhhH
Confidence 4788999999999999999985
No 246
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A*
Probab=97.05 E-value=0.012 Score=65.43 Aligned_cols=86 Identities=10% Similarity=0.017 Sum_probs=58.8
Q ss_pred hhcHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchH
Q 004888 543 VSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDY 622 (725)
Q Consensus 543 tsWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~leDy 622 (725)
|...+.++.+||.|++++++.+ ..| -.++|+.|+++.+|..++--....+++| ...++.|
T Consensus 152 sd~a~~~AAalAaas~vfk~~D--~~y--------A~~~L~~A~~~~~fa~~~~g~~~~~~~Y--------~ss~~~D-- 211 (441)
T 1ia6_A 152 SDILSETSAALTLMYLNYKNID--SAY--------ATKCLNAAKELYAMGKANQGVGNGQSFY--------QATSFGD-- 211 (441)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTC--HHH--------HHHHHHHHHHHHHHHHHSCSCCCCTTTS--------CCCCSHH--
T ss_pred cHHHHHHHHHHHHHHHhccccC--HHH--------HHHHHHHHHHHHHHHHHcCCCCCCCCCC--------CCCCchh--
Confidence 3455888999999999998622 112 2578999999999998763111111111 1123334
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004888 623 AFLISGLLDLYEFGSGTKWLVWAIELQ 649 (725)
Q Consensus 623 A~li~aLL~LYe~Tgd~~yL~~A~~L~ 649 (725)
.++.|.+.||.+|||..|++.|++..
T Consensus 212 -E~~WAAa~Ly~aTgd~~Yl~~a~~~~ 237 (441)
T 1ia6_A 212 -DLAWAATWLYTATNDSTYITDAEQFI 237 (441)
T ss_dssp -HHHHHHHHHHHHHCCTHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45688899999999999999998753
No 247
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=97.01 E-value=0.002 Score=57.37 Aligned_cols=78 Identities=17% Similarity=0.212 Sum_probs=48.9
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcE
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~ 207 (725)
++.+++..+.++ ++.|+++||++|+.+. .+.+.++-.|..|.||... |+- ......+...+|...+|++
T Consensus 9 ~~~~~~~i~~~~--v~vy~~~~Cp~C~~~~-------~~L~~~~i~~~~~di~~~~-~~~-~~~~~~l~~~~g~~tvP~i 77 (113)
T 3rhb_A 9 EESIRKTVTENT--VVIYSKTWCSYCTEVK-------TLFKRLGVQPLVVELDQLG-PQG-PQLQKVLERLTGQHTVPNV 77 (113)
T ss_dssp HHHHHHHHHHSS--EEEEECTTCHHHHHHH-------HHHHHTTCCCEEEEGGGST-THH-HHHHHHHHHHHSCCSSCEE
T ss_pred HHHHHHHHhcCC--EEEEECCCChhHHHHH-------HHHHHcCCCCeEEEeecCC-CCh-HHHHHHHHHHhCCCCcCEE
Confidence 555666666666 5558999999999986 3444456578777777531 111 1223334445688899998
Q ss_pred EEecCCCCcccc
Q 004888 208 VFLSPDLKPLMG 219 (725)
Q Consensus 208 vfl~pdG~~i~~ 219 (725)
++ +|+.+.+
T Consensus 78 fi---~g~~igG 86 (113)
T 3rhb_A 78 FV---CGKHIGG 86 (113)
T ss_dssp EE---TTEEEES
T ss_pred EE---CCEEEcC
Confidence 54 6776643
No 248
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B
Probab=96.97 E-value=0.00055 Score=61.43 Aligned_cols=80 Identities=14% Similarity=0.192 Sum_probs=43.9
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcE
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~ 207 (725)
.+.++.+.+.++ ++.|+++||++|+.+.. .+..-.+. +.+|..|.|| +.|+-.. ....+...+|..++|+.
T Consensus 9 ~~~~~~~i~~~~--vv~f~~~~Cp~C~~~~~-~L~~~~~~---~~~~~~vdi~--~~~~~~~-~~~~l~~~~g~~~vP~v 79 (114)
T 2hze_A 9 EEFVQQRLANNK--VTIFVKYTCPFCRNALD-ILNKFSFK---RGAYEIVDIK--EFKPENE-LRDYFEQITGGKTVPRI 79 (114)
T ss_dssp HHHHHTTCCTTC--EEEEECTTCHHHHHHHH-HHTTSCBC---TTSEEEEEGG--GSSSHHH-HHHHHHHHHSCCSSCEE
T ss_pred HHHHHHHhccCC--EEEEEeCCChhHHHHHH-HHHHcCCC---cCceEEEEcc--CCCChHH-HHHHHHHHhCCCCcCEE
Confidence 455555555443 66789999999999863 33322211 0116555554 4442111 11222233588999976
Q ss_pred EEecCCCCcccc
Q 004888 208 VFLSPDLKPLMG 219 (725)
Q Consensus 208 vfl~pdG~~i~~ 219 (725)
+ + +|+.+.+
T Consensus 80 ~-i--~g~~igg 88 (114)
T 2hze_A 80 F-F--GKTSIGG 88 (114)
T ss_dssp E-E--TTEEEES
T ss_pred E-E--CCEEEeC
Confidence 4 4 6776643
No 249
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Probab=96.96 E-value=0.0012 Score=54.70 Aligned_cols=59 Identities=14% Similarity=0.146 Sum_probs=37.9
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCcc
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i 217 (725)
++.|+++||++|+.+.. +.+.++-.|. ++|+++.|++.+.+. . +|+.++|+++ . +|+.+
T Consensus 3 v~~f~~~~C~~C~~~~~-------~l~~~~i~~~--~vdi~~~~~~~~~~~----~-~g~~~vP~~~-~--~g~~~ 61 (81)
T 1h75_A 3 ITIYTRNDCVQCHATKR-------AMENRGFDFE--MINVDRVPEAAEALR----A-QGFRQLPVVI-A--GDLSW 61 (81)
T ss_dssp EEEEECTTCHHHHHHHH-------HHHHTTCCCE--EEETTTCHHHHHHHH----H-TTCCSSCEEE-E--TTEEE
T ss_pred EEEEcCCCChhHHHHHH-------HHHHCCCCeE--EEECCCCHHHHHHHH----H-hCCCccCEEE-E--CCEEE
Confidence 56689999999999863 2222333454 567766676544332 2 4888999984 3 56654
No 250
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*
Probab=96.90 E-value=0.002 Score=58.39 Aligned_cols=80 Identities=13% Similarity=0.204 Sum_probs=42.3
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhh-hhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCc
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVM-EVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~M-e~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~ 206 (725)
.+.++.+.+.++ ++.|+++||++|+.+ .. .+..-.. . +-.|..|.|| +.++-. ...+.+...+|..++|+
T Consensus 15 ~~~~~~~i~~~~--Vvvf~~~~Cp~C~~alk~-~L~~~~~-~--~i~~~~vdid--~~~~~~-~~~~~l~~~~g~~tvP~ 85 (118)
T 3c1r_A 15 IKHVKDLIAENE--IFVASKTYCPYCHAALNT-LFEKLKV-P--RSKVLVLQLN--DMKEGA-DIQAALYEINGQRTVPN 85 (118)
T ss_dssp HHHHHHHHHHSS--EEEEECSSCHHHHHHHHH-HHTTSCC-C--GGGEEEEEGG--GSTTHH-HHHHHHHHHHSCCSSCE
T ss_pred HHHHHHHHccCc--EEEEEcCCCcCHHHHHHH-HHHHcCC-C--CCCeEEEECc--cCCChH-HHHHHHHHHhCCCCcCE
Confidence 344555555554 445999999999997 53 2222110 0 0235554444 444311 12222333458889998
Q ss_pred EEEecCCCCcccc
Q 004888 207 SVFLSPDLKPLMG 219 (725)
Q Consensus 207 ~vfl~pdG~~i~~ 219 (725)
++ + +|+.+.+
T Consensus 86 vf-i--~g~~igG 95 (118)
T 3c1r_A 86 IY-I--NGKHIGG 95 (118)
T ss_dssp EE-E--TTEEEES
T ss_pred EE-E--CCEEEEc
Confidence 64 4 6676643
No 251
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=96.87 E-value=0.0015 Score=67.28 Aligned_cols=98 Identities=14% Similarity=-0.084 Sum_probs=54.0
Q ss_pred cCCc-EEEEEeccCChhhHhhhhhccCCHHHHHHH-hcCcEEEEEcCCCCcchHHHHHHH--------------------
Q 004888 137 RDVP-IFLSIGYSTCHWCHVMEVESFEDEGVAKLL-NDWFVSIKVDREERPDVDKVYMTY-------------------- 194 (725)
Q Consensus 137 e~Kp-I~l~~g~~wC~~C~~Me~e~f~d~eVa~~l-n~~FV~VkvD~ee~pd~~~~y~~~-------------------- 194 (725)
.||+ |+++|.++||+.|..+-. .|+ ++.+.+ ++++..|-|+.+..... ..+.+.
T Consensus 32 ~GK~vVL~~fpa~~CpvC~tEl~-~l~--~l~~ef~~~gv~VI~VS~Ds~~~~-~~w~~~~~~~~~~~i~fPil~D~~~~ 107 (249)
T 3a2v_A 32 QGKWFVLFSHPADFTPVCTTEFV-SFA--RRYEDFQRLGVDLIGLSVDSVFSH-IKWKEWIERHIGVRIPFPIIADPQGT 107 (249)
T ss_dssp TTCEEEEECCSCTTCHHHHHHHH-HHH--HTHHHHHHTTEEEEEEESSCHHHH-HHHHHHHHHHTCCCCCSCEEECTTSH
T ss_pred CCCEEEEEEEcCCCCcChHHHHH-HHH--HHHHHHHhCCcEEEEEECCCHHHH-HHHHHHHHHhcCCCCceeEEECCchH
Confidence 5786 566889999999997642 222 122222 23566666666532111 111110
Q ss_pred HHHhcCCC-------CcCcEEEecCCCCccccccccCCCCCCCcchHHHHHHHHH
Q 004888 195 VQALYGGG-------GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (725)
Q Consensus 195 ~q~~~g~~-------G~P~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i~ 242 (725)
+...+|+. ++|+++|+||+|++.....+-.+.+ ..+-++|+.|.
T Consensus 108 ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~g----r~~~Ellr~I~ 158 (249)
T 3a2v_A 108 VARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELG----RLVDEILRIVK 158 (249)
T ss_dssp HHHHHTCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBC----CCHHHHHHHHH
T ss_pred HHHHhCCccccCCCcccceEEEECCCCeEEEEEecCCccc----chhHHHHHHHH
Confidence 11123543 8999999999999887643322211 13555555554
No 252
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=96.87 E-value=0.0023 Score=60.79 Aligned_cols=21 Identities=14% Similarity=0.096 Sum_probs=18.0
Q ss_pred cCCcEEEEEe-ccCChhhHhhh
Q 004888 137 RDVPIFLSIG-YSTCHWCHVME 157 (725)
Q Consensus 137 e~KpI~l~~g-~~wC~~C~~Me 157 (725)
.||+++|.|+ +.||+.|...-
T Consensus 46 ~gk~vvl~f~~~~~C~~C~~~~ 67 (171)
T 2yzh_A 46 KDVVQVIITVPSLDTPVCETET 67 (171)
T ss_dssp CSSEEEEEECSCTTSHHHHHHH
T ss_pred CCCeEEEEEECCCCCCchHHHH
Confidence 4899999998 89999998643
No 253
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Probab=96.86 E-value=0.0012 Score=55.40 Aligned_cols=65 Identities=12% Similarity=-0.034 Sum_probs=42.6
Q ss_pred cEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCC-----CCcCcEEEecCCC
Q 004888 140 PIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGG-----GGWPLSVFLSPDL 214 (725)
Q Consensus 140 pI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~-----~G~P~~vfl~pdG 214 (725)
+.++.|+++||++|+.+. .+.+.++-.|..+.||..+.+...+. +...+|. .++|++++ +|
T Consensus 4 m~v~ly~~~~Cp~C~~~~-------~~L~~~~i~~~~~~vd~~~~~~~~~e----l~~~~g~~~~~~~~vP~i~i---~g 69 (89)
T 3msz_A 4 MKVKIYTRNGCPYCVWAK-------QWFEENNIAFDETIIDDYAQRSKFYD----EMNQSGKVIFPISTVPQIFI---DD 69 (89)
T ss_dssp CCEEEEECTTCHHHHHHH-------HHHHHTTCCCEEEECCSHHHHHHHHH----HHHTTTCCSSCCCSSCEEEE---TT
T ss_pred eEEEEEEcCCChhHHHHH-------HHHHHcCCCceEEEeecCCChhHHHH----HHHHhCCCCCCCCccCEEEE---CC
Confidence 346678899999999986 34444555688888887544322122 2334577 89999865 67
Q ss_pred Cccc
Q 004888 215 KPLM 218 (725)
Q Consensus 215 ~~i~ 218 (725)
+.+.
T Consensus 70 ~~i~ 73 (89)
T 3msz_A 70 EHIG 73 (89)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7663
No 254
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=96.86 E-value=0.0017 Score=64.75 Aligned_cols=80 Identities=6% Similarity=-0.073 Sum_probs=45.6
Q ss_pred cCCcEEEEEe-ccCChhhHhhhhhccCCHHHHHHHh-cCcEEEEEcCCCCcchHHHHHHH--------------------
Q 004888 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTY-------------------- 194 (725)
Q Consensus 137 e~KpI~l~~g-~~wC~~C~~Me~e~f~d~eVa~~ln-~~FV~VkvD~ee~pd~~~~y~~~-------------------- 194 (725)
.||+|+|+|+ ++||+.|...-. .|. ++.+.+. +++..|-|..+. ++..+.|.+.
T Consensus 47 ~Gk~vvl~F~pat~C~~C~~e~~-~l~--~l~~~~~~~~v~vv~Is~D~-~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~ 122 (211)
T 2pn8_A 47 RGKYLVFFFYPLDFTFVCPTEII-AFG--DRLEEFRSINTEVVACSVDS-QFTHLAWINTPRRQGGLGPIRIPLLSDLTH 122 (211)
T ss_dssp TTSEEEEEECSCTTSSHHHHHHH-HHH--HTHHHHHTTTEEEEEEESSC-HHHHHHHHTSCGGGTCCCSCSSCEEECTTS
T ss_pred CCCeEEEEEECCCCCCCCHHHHH-HHH--HHHHHHHHCCCEEEEEECCC-HHHHHHHHHHhhhccCccCCceEEEECCch
Confidence 5899999999 999999986432 111 2222222 344555444432 2111112110
Q ss_pred -HHHhcCCC------CcCcEEEecCCCCccccc
Q 004888 195 -VQALYGGG------GWPLSVFLSPDLKPLMGG 220 (725)
Q Consensus 195 -~q~~~g~~------G~P~~vfl~pdG~~i~~~ 220 (725)
+...+|+. .+|+++++|++|++++..
T Consensus 123 ~~~~~ygv~~~~~g~~~p~~~lID~~G~I~~~~ 155 (211)
T 2pn8_A 123 QISKDYGVYLEDSGHTLRGLFIIDDKGILRQIT 155 (211)
T ss_dssp HHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHHcCCcccCCCcccceEEEECCCCEEEEEE
Confidence 01113542 589999999999988653
No 255
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}
Probab=96.83 E-value=0.0019 Score=65.84 Aligned_cols=80 Identities=6% Similarity=-0.081 Sum_probs=46.7
Q ss_pred cCCcEEEEEec-cCChhhHhhhhhccCCHHHHHHHh-cCcEEEEEcCCCCcchHHHHHHH--------------------
Q 004888 137 RDVPIFLSIGY-STCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTY-------------------- 194 (725)
Q Consensus 137 e~KpI~l~~g~-~wC~~C~~Me~e~f~d~eVa~~ln-~~FV~VkvD~ee~pd~~~~y~~~-------------------- 194 (725)
.||+|+|.|++ +||+.|...-. .|. ++.+.+. +++..|-|..+. ++..+.|.+.
T Consensus 76 ~Gk~vvL~F~~~~~cp~C~~el~-~l~--~l~~~~~~~gv~vv~Is~D~-~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~ 151 (240)
T 3qpm_A 76 RGKYLVFFFYPLDFTFVCPTEII-AFS--DRVHEFRAINTEVVACSVDS-QFTHLAWIITPRKQGGLGPMKIPLLSDLTH 151 (240)
T ss_dssp TTSEEEEEECSCTTSSHHHHHHH-HHH--HHHHHHHTTTEEEEEEESSC-HHHHHHHHHSCGGGTCCCSCSSCEEECTTS
T ss_pred CCCEEEEEEECCCCCCchHHHHH-HHH--HHHHHHHHCCCEEEEEECCC-HHHHHHHHHHHHhhcCCCCCceeEEeCchH
Confidence 58999999999 99999997432 121 2333332 245555555442 2221222111
Q ss_pred -HHHhcCCC------CcCcEEEecCCCCccccc
Q 004888 195 -VQALYGGG------GWPLSVFLSPDLKPLMGG 220 (725)
Q Consensus 195 -~q~~~g~~------G~P~~vfl~pdG~~i~~~ 220 (725)
+...+|+. ..|+++++|++|++++..
T Consensus 152 ~v~~~ygv~~~~~g~~~p~~flID~~G~I~~~~ 184 (240)
T 3qpm_A 152 QISKDYGVYLEDQGHTLRGLFIIDEKGVLRQIT 184 (240)
T ss_dssp HHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHHhCCccccCCCccceEEEEcCCCeEEEEE
Confidence 01123543 479999999999998653
No 256
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=96.80 E-value=0.0029 Score=60.47 Aligned_cols=21 Identities=33% Similarity=0.713 Sum_probs=18.3
Q ss_pred cCCcEEEEEeccCCh-hhHhhh
Q 004888 137 RDVPIFLSIGYSTCH-WCHVME 157 (725)
Q Consensus 137 e~KpI~l~~g~~wC~-~C~~Me 157 (725)
.||+++|+|+++||+ .|...-
T Consensus 27 ~Gk~vll~F~~t~C~~~C~~~~ 48 (170)
T 3me7_A 27 KGKPIILSPIYTHCRAACPLIT 48 (170)
T ss_dssp TTSCEEEEEECTTCCSHHHHHH
T ss_pred CCCEEEEEEECCCCCchhHHHH
Confidence 389999999999997 698754
No 257
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}
Probab=96.79 E-value=0.005 Score=61.33 Aligned_cols=20 Identities=5% Similarity=-0.245 Sum_probs=18.0
Q ss_pred cCCcEEEEEeccCChhhHhh
Q 004888 137 RDVPIFLSIGYSTCHWCHVM 156 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~M 156 (725)
.||+|+|.|+++||+.|..|
T Consensus 37 kGKvvll~F~At~C~~c~e~ 56 (207)
T 2r37_A 37 AGKYVLFVNVASYGGLTGQY 56 (207)
T ss_dssp TTSEEEEEEECSSSTTTTHH
T ss_pred CCCEEEEEEeCCCCCChHHH
Confidence 68999999999999999555
No 258
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}
Probab=96.76 E-value=0.0023 Score=64.35 Aligned_cols=41 Identities=10% Similarity=0.021 Sum_probs=26.9
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHh-cCcEEEEEcC
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDR 181 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln-~~FV~VkvD~ 181 (725)
.||+|+|.|+|+||+.|+.|.. | .++.+.+. +.|+.|=|..
T Consensus 55 ~GKvvll~FwAt~C~~c~e~p~--L--~~l~~~~~~~g~~Vlgvs~ 96 (215)
T 2i3y_A 55 VGKHILFVNVATYCGLTAQYPE--L--NALQEELKPYGLVVLGFPC 96 (215)
T ss_dssp TTSEEEEEEECSSSGGGGGHHH--H--HHHHHHHGGGTEEEEEEEC
T ss_pred CCCEEEEEEeCCCCCChHhHHH--H--HHHHHHhccCCeEEEEEEc
Confidence 6899999999999999985531 2 13333332 3466666643
No 259
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}
Probab=96.75 E-value=0.0033 Score=55.23 Aligned_cols=63 Identities=22% Similarity=0.350 Sum_probs=41.5
Q ss_pred CcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEE
Q 004888 139 VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (725)
Q Consensus 139 KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vf 209 (725)
++-++.|+++||++|+.+. .+.+.++-.|..|.||..+..+ ...+...+...+|..++|++++
T Consensus 21 ~~~v~ly~~~~Cp~C~~ak-------~~L~~~~i~y~~vdI~~~~~~~-~~~~~~~l~~~~g~~~vP~l~i 83 (103)
T 3nzn_A 21 RGKVIMYGLSTCVWCKKTK-------KLLTDLGVDFDYVYVDRLEGKE-EEEAVEEVRRFNPSVSFPTTII 83 (103)
T ss_dssp CSCEEEEECSSCHHHHHHH-------HHHHHHTBCEEEEEGGGCCHHH-HHHHHHHHHHHCTTCCSCEEEE
T ss_pred CCeEEEEcCCCCchHHHHH-------HHHHHcCCCcEEEEeeccCccc-HHHHHHHHHHhCCCCccCEEEE
Confidence 3345668999999999986 3445566678887777643222 2223333344568899999876
No 260
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=96.69 E-value=0.0033 Score=54.92 Aligned_cols=63 Identities=19% Similarity=0.171 Sum_probs=40.3
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcC-cEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCcccc
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~-FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~~ 219 (725)
++-++.+||+||++.. ++|+++ .-...+|+++.|+..+.+. +...|....|+++| .||+.+.+
T Consensus 6 I~vYs~~~Cp~C~~aK----------~~L~~~gi~y~~idi~~d~~~~~~~~---~~~~G~~tVP~I~i--~Dg~~l~~ 69 (92)
T 2lqo_A 6 LTIYTTSWCGYCLRLK----------TALTANRIAYDEVDIEHNRAAAEFVG---SVNGGNRTVPTVKF--ADGSTLTN 69 (92)
T ss_dssp EEEEECTTCSSHHHHH----------HHHHHTTCCCEEEETTTCHHHHHHHH---HHSSSSSCSCEEEE--TTSCEEES
T ss_pred EEEEcCCCCHhHHHHH----------HHHHhcCCceEEEEcCCCHHHHHHHH---HHcCCCCEeCEEEE--eCCEEEeC
Confidence 4567899999999875 234432 2223567777777655442 22347778998776 67777644
No 261
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=96.68 E-value=0.0047 Score=55.42 Aligned_cols=77 Identities=9% Similarity=0.071 Sum_probs=47.6
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcE
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~ 207 (725)
.+.+++..++++ |.| |+.+||++|+.+. .+.+.++-.|..+.||..+.+. .....+...+|...+|..
T Consensus 7 ~~~~~~~i~~~~-v~v-y~~~~Cp~C~~ak-------~~L~~~~i~~~~~dvd~~~~~~---~~~~~l~~~~g~~tvP~v 74 (114)
T 3h8q_A 7 RRHLVGLIERSR-VVI-FSKSYCPHSTRVK-------ELFSSLGVECNVLELDQVDDGA---RVQEVLSEITNQKTVPNI 74 (114)
T ss_dssp HHHHHHHHHHCS-EEE-EECTTCHHHHHHH-------HHHHHTTCCCEEEETTTSTTHH---HHHHHHHHHHSCCSSCEE
T ss_pred HHHHHHHhccCC-EEE-EEcCCCCcHHHHH-------HHHHHcCCCcEEEEecCCCChH---HHHHHHHHHhCCCccCEE
Confidence 455666666665 333 8999999999886 3334455567777666543221 122223334588889998
Q ss_pred EEecCCCCcccc
Q 004888 208 VFLSPDLKPLMG 219 (725)
Q Consensus 208 vfl~pdG~~i~~ 219 (725)
++ +|+.+.|
T Consensus 75 fi---~g~~igG 83 (114)
T 3h8q_A 75 FV---NKVHVGG 83 (114)
T ss_dssp EE---TTEEEES
T ss_pred EE---CCEEEeC
Confidence 76 6776643
No 262
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=96.67 E-value=0.0036 Score=58.58 Aligned_cols=76 Identities=12% Similarity=0.086 Sum_probs=41.7
Q ss_pred cCCcEEEEEe-ccCChhhHhhhhhccCCHHHHHHHhc--CcEEEEEcCCCCcchHHHHHHH--------------HHHhc
Q 004888 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTY--------------VQALY 199 (725)
Q Consensus 137 e~KpI~l~~g-~~wC~~C~~Me~e~f~d~eVa~~ln~--~FV~VkvD~ee~pd~~~~y~~~--------------~q~~~ 199 (725)
.+|+|+|.|+ ++||+.|...-. .+. ++.+.+.+ .+|.|-+| . ++..+.|.+. +...+
T Consensus 34 k~~~vvl~f~~~~~c~~C~~~~~-~l~--~~~~~~~~~~~vv~is~d--~-~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 107 (159)
T 2a4v_A 34 NNRVVVFFVYPRASTPGSTRQAS-GFR--DNYQELKEYAAVFGLSAD--S-VTSQKKFQSKQNLPYHLLSDPKREFIGLL 107 (159)
T ss_dssp HCSEEEEEECSSSSSHHHHHHHH-HHH--HHHHHHTTTCEEEEEESC--C-HHHHHHHHHHHTCSSEEEECTTCHHHHHH
T ss_pred CCCeEEEEEcCCCCCCCHHHHHH-HHH--HHHHHHHhCCcEEEEeCC--C-HHHHHHHHHHhCCCceEEECCccHHHHHh
Confidence 3458999986 999999996532 121 22233332 34444444 2 3222233221 11123
Q ss_pred CCCCcC------cEEEecCCCCcccc
Q 004888 200 GGGGWP------LSVFLSPDLKPLMG 219 (725)
Q Consensus 200 g~~G~P------~~vfl~pdG~~i~~ 219 (725)
|+.+.| +++++ ++|++++.
T Consensus 108 gv~~~p~~g~~~~~~li-~~G~i~~~ 132 (159)
T 2a4v_A 108 GAKKTPLSGSIRSHFIF-VDGKLKFK 132 (159)
T ss_dssp TCBSSSSSCBCCEEEEE-ETTEEEEE
T ss_pred CCcccccCCccceEEEE-cCCEEEEE
Confidence 666667 77778 99988764
No 263
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=96.66 E-value=0.0044 Score=60.10 Aligned_cols=79 Identities=6% Similarity=-0.173 Sum_probs=46.1
Q ss_pred cCCcEEEEEec-cCChhhHhhhhhccCCHHHHHHHh-cCcEEEEEcCCCCcchHHHHHHHH------------------H
Q 004888 137 RDVPIFLSIGY-STCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTYV------------------Q 196 (725)
Q Consensus 137 e~KpI~l~~g~-~wC~~C~~Me~e~f~d~eVa~~ln-~~FV~VkvD~ee~pd~~~~y~~~~------------------q 196 (725)
.||+|+|.|++ +||+.|...-. .|+ ++.+.+. +++..|-|..+. ++..+.|.+.. .
T Consensus 29 ~Gk~vvl~F~~~~~Cp~C~~e~~-~l~--~~~~~~~~~~v~vv~Is~d~-~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~ 104 (186)
T 1n8j_A 29 EGRWSVFFFYPADFTFVSPTELG-DVA--DHYEELQKLGVDVYSVSTDT-HFTHKAWHSSSETIAKIKYAMIGDPTGALT 104 (186)
T ss_dssp TTSEEEEEECSCTTCSHHHHHHH-HHH--HHHHHHHHTTEEEEEEESSC-HHHHHHHHHHCTTGGGCCSEEEECTTSHHH
T ss_pred CCCeEEEEEECCCCCCccHHHHH-HHH--HHHHHHHHCCCEEEEEECCC-HHHHHHHHHHcCcccCCceeEEECCchHHH
Confidence 48999999995 99999986532 121 2222222 355555555542 32223332211 0
Q ss_pred HhcCCC----C--cCcEEEecCCCCcccc
Q 004888 197 ALYGGG----G--WPLSVFLSPDLKPLMG 219 (725)
Q Consensus 197 ~~~g~~----G--~P~~vfl~pdG~~i~~ 219 (725)
..+|+. | .|+++++|++|++++.
T Consensus 105 ~~ygv~~~~~g~~~p~~~lID~~G~i~~~ 133 (186)
T 1n8j_A 105 RNFDNMREDEGLADRATFVVDPQGIIQAI 133 (186)
T ss_dssp HHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHhCCccCCCCceeeEEEEECCCCeEEEE
Confidence 112433 2 6999999999998865
No 264
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}
Probab=96.65 E-value=0.0074 Score=61.24 Aligned_cols=38 Identities=8% Similarity=0.013 Sum_probs=25.4
Q ss_pred cCcEEEecCCCCccccccccCCCCCCCcchHHHHHHHHHHH
Q 004888 204 WPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDA 244 (725)
Q Consensus 204 ~P~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i~~~ 244 (725)
.|.++++|++|++.+....-.+ .+.+.+-++|+.|...
T Consensus 137 ~p~tfvID~dG~I~~~~~~~~~---~~~pd~~evl~~L~~l 174 (224)
T 3keb_A 137 SPAIILADAANVVHYSERLANT---RDFFDFDAIEKLLQEG 174 (224)
T ss_dssp CCEEEEECTTCBEEEEEECSBT---TCCCCHHHHHHHHHHH
T ss_pred cCEEEEEcCCCEEEEEEecCCC---CCCCCHHHHHHHHHHh
Confidence 6999999999999876322111 2345677777776544
No 265
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=96.61 E-value=0.0069 Score=53.30 Aligned_cols=74 Identities=14% Similarity=0.152 Sum_probs=43.4
Q ss_pred HHHHHHHhhcCCcEEEEEec-----cCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCC
Q 004888 128 EEAFAEARKRDVPIFLSIGY-----STCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGG 202 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~-----~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~ 202 (725)
.+-++...+.+ +|+| |+. +||++|+.+.. +.+.++-.|..| |+++.|++.+.+ ...+|..
T Consensus 7 ~~~~~~~i~~~-~vvv-f~~g~~~~~~C~~C~~~~~-------~L~~~~i~~~~v--di~~~~~~~~~l----~~~~g~~ 71 (105)
T 2yan_A 7 EERLKVLTNKA-SVML-FMKGNKQEAKCGFSKQILE-------ILNSTGVEYETF--DILEDEEVRQGL----KAYSNWP 71 (105)
T ss_dssp HHHHHHHHTSS-SEEE-EESBCSSSBCTTHHHHHHH-------HHHHHTCCCEEE--EGGGCHHHHHHH----HHHHTCC
T ss_pred HHHHHHHhccC-CEEE-EEecCCCCCCCccHHHHHH-------HHHHCCCCeEEE--ECCCCHHHHHHH----HHHHCCC
Confidence 34455555555 5666 444 99999998863 223334356544 555556543333 2335888
Q ss_pred CcCcEEEecCCCCcccc
Q 004888 203 GWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 203 G~P~~vfl~pdG~~i~~ 219 (725)
++|+++ + +|+.+.+
T Consensus 72 ~vP~v~-i--~g~~igg 85 (105)
T 2yan_A 72 TYPQLY-V--KGELVGG 85 (105)
T ss_dssp SSCEEE-E--TTEEEEC
T ss_pred CCCeEE-E--CCEEEeC
Confidence 999875 3 6776643
No 266
>1g87_A Endocellulase 9G; endoglucanase, cellulose binding domain, (ALPH 6-helix barrel, beta barrel, hydrolase; 1.60A {Clostridium cellulolyticum} SCOP: a.102.1.2 b.2.2.2 PDB: 1ga2_A* 1k72_A* 1kfg_A*
Probab=96.55 E-value=0.052 Score=62.80 Aligned_cols=84 Identities=17% Similarity=0.173 Sum_probs=57.4
Q ss_pred cHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC--CCCCCcchH
Q 004888 545 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDDY 622 (725)
Q Consensus 545 WNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~--~~~~~leDy 622 (725)
-.+.++.|||.|++++++.+ ..| -.++|+.|+++.+|..++--. .+ ...+.. ...++.+
T Consensus 152 ~a~e~AAAlAaAS~vfk~~D--~~y--------A~~~L~~Ak~l~~fA~~~~~~--~~-----~~~~~~~Y~ss~~~D-- 212 (614)
T 1g87_A 152 VCASTAASLASAAVVFKSSD--PTY--------AEKCISHAKNLFDMADKAKSD--AG-----YTAASGYYSSSSFYD-- 212 (614)
T ss_dssp HHHHHHHHHHHHHHHHTTTC--HHH--------HHHHHHHHHHHHHHHHHHCCC--TT-----CCTTTTTSCCSCSHH--
T ss_pred HHHHHHHHHHHHHHhccccC--HHH--------HHHHHHHHHHHHHHHHHcCCC--CC-----CCcCcCCcCCCCchh--
Confidence 34888999999999998632 112 257899999999999886421 10 000100 1123333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004888 623 AFLISGLLDLYEFGSGTKWLVWAIEL 648 (725)
Q Consensus 623 A~li~aLL~LYe~Tgd~~yL~~A~~L 648 (725)
.++.|.+.||.+|||..||+.|++.
T Consensus 213 -El~WAAawLy~ATgd~~Yl~~a~~~ 237 (614)
T 1g87_A 213 -DLSWAAVWLYLATNDSTYLDKAESY 237 (614)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4578899999999999999999863
No 267
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=96.54 E-value=0.0056 Score=50.49 Aligned_cols=61 Identities=15% Similarity=0.194 Sum_probs=38.1
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCccc
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 218 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~ 218 (725)
++.|+++||++|+.+.. +.+.++-.|..|.|| +.++....+. ..+|..++|+.++ +|+.+.
T Consensus 3 i~~y~~~~C~~C~~~~~-------~l~~~~i~~~~~~i~--~~~~~~~~~~----~~~~~~~vP~l~~---~g~~i~ 63 (82)
T 1fov_A 3 VEIYTKETCPYCHRAKA-------LLSSKGVSFQELPID--GNAAKREEMI----KRSGRTTVPQIFI---DAQHIG 63 (82)
T ss_dssp EEEEECSSCHHHHHHHH-------HHHHHTCCCEEEECT--TCSHHHHHHH----HHHSSCCSCEEEE---TTEEEE
T ss_pred EEEEECCCChhHHHHHH-------HHHHCCCCcEEEECC--CCHHHHHHHH----HHhCCCCcCEEEE---CCEEEe
Confidence 45689999999999862 223334456655554 4455443332 2348899999853 677653
No 268
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=96.52 E-value=0.0037 Score=66.62 Aligned_cols=70 Identities=10% Similarity=0.051 Sum_probs=50.4
Q ss_pred hhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCC--CCcchHHHHHHHHHHhcCCCC--cCcEEEe
Q 004888 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE--ERPDVDKVYMTYVQALYGGGG--WPLSVFL 210 (725)
Q Consensus 135 k~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~e--e~pd~~~~y~~~~q~~~g~~G--~P~~vfl 210 (725)
.+..++++|.|+++||..|+.+.. .| .++++.++..+..+.||.+ +.+.+.+.| |+.+ +|+.+++
T Consensus 132 ~~~~~~~~v~F~~~~~~~~~~~~~-~~--~~~A~~~~~~i~f~~vd~~~~~~~~~~~~f--------gi~~~~~P~~~~~ 200 (361)
T 3uem_A 132 GGEIKTHILLFLPKSVSDYDGKLS-NF--KTAAESFKGKILFIFIDSDHTDNQRILEFF--------GLKKEECPAVRLI 200 (361)
T ss_dssp SCSCCEEEEEECCSSSSSHHHHHH-HH--HHHHGGGTTTCEEEEECTTSGGGHHHHHHT--------TCCTTTCSEEEEE
T ss_pred cCCCCcEEEEEEeCCchhHHHHHH-HH--HHHHHHccCceEEEEecCChHHHHHHHHHc--------CCCccCCccEEEE
Confidence 444567899999999999998863 23 2566666667889999988 445544433 7766 9999999
Q ss_pred cCCCC
Q 004888 211 SPDLK 215 (725)
Q Consensus 211 ~pdG~ 215 (725)
+.++.
T Consensus 201 ~~~~~ 205 (361)
T 3uem_A 201 TLEEE 205 (361)
T ss_dssp ECC--
T ss_pred EcCCc
Confidence 88543
No 269
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=96.49 E-value=0.0082 Score=58.77 Aligned_cols=43 Identities=16% Similarity=-0.014 Sum_probs=28.8
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCC
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE 182 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~e 182 (725)
.+|++++.|+..||++|+.|+... +++.+.+.++++.+++++.
T Consensus 23 ~~~v~vv~f~d~~Cp~C~~~~~~l---~~~~~~~~~~v~~~~~p~~ 65 (193)
T 3hz8_A 23 AGKVEVLEFFGYFCPHCAHLEPVL---SKHAKSFKDDMYLRTEHVV 65 (193)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHH---HHHHTTCCTTEEEEEEECC
T ss_pred CCCcEEEEEECCCChhHHHHHHHH---HHHHHHCCCCeEEEEecCC
Confidence 368899999999999999998422 2333333234666666553
No 270
>2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative conformations, modulation of activity, glycoprot glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A {Penicillium citrinum} SCOP: a.102.2.1 PDB: 2ri8_A* 1kkt_A* 1kre_A* 1krf_A*
Probab=96.45 E-value=0.12 Score=57.95 Aligned_cols=120 Identities=8% Similarity=0.024 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEe--cCCCCCC--------CCC---cchH---HHHHHHHHHHHHHcCCHHHH
Q 004888 579 KEYMEVAESAASFIRRHLYDEQTHRLQHSF--RNGPSKA--------PGF---LDDY---AFLISGLLDLYEFGSGTKWL 642 (725)
Q Consensus 579 ~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~--~~g~~~~--------~~~---leDy---A~li~aLL~LYe~Tgd~~yL 642 (725)
+++++.|+++++-.........+|..-..+ ..+.... .++ ...| -.+|+.+.-||++|||+.|+
T Consensus 313 ~~~~~~a~~l~~tC~~~y~~~~tGl~PE~~~~~~~~~~~~~~~~~~~~g~~~~~~~y~LRPE~iES~fylyR~TgD~~yr 392 (475)
T 2ri9_A 313 QDFIDFGLELVDGCEATYNSTLTKIGPDSWGWDPKKVPSDQKEFYEKAGFYISSGSYVLRPEVIESFYYAHRVTGKEIYR 392 (475)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSSCCCSEEECCTTCCCGGGHHHHHHHSCEEEECCBCSCCHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCcEEEeecCcccccccccccCCCceecccccCCChHHHHHHHHHHHHhCCHHHH
Confidence 789999999998765544332234322221 1111100 010 0112 27899999999999999999
Q ss_pred HHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHhhCC
Q 004888 643 VWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 706 (725)
Q Consensus 643 ~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~t~~ 706 (725)
+++.++++.+..+..-+ .||=... + |........+..++|- .+|+-|=-|+-+..+
T Consensus 393 ~~gw~~f~ai~k~~rt~--~G~a~i~-d---V~~~~~~~~~D~meSF--~laETLKYlYLLFsd 448 (475)
T 2ri9_A 393 DWVWNAFVAINSTCRTD--SGFAAVS-D---VNKANGGSKYDNQESF--LFAEVMKYSYLAHSE 448 (475)
T ss_dssp HHHHHHHHHHHHHTBCS--SSBCCBS-C---TTSGGGSSBBSCCCTH--HHHTHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHccc--cCCcccc-c---ccCCCCCCcCCccchH--HHHHHHHHHHhcccC
Confidence 99999999999987543 3332211 1 1000002234445554 567777777777665
No 271
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=96.42 E-value=0.005 Score=49.80 Aligned_cols=59 Identities=12% Similarity=0.032 Sum_probs=37.7
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCcc
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i 217 (725)
++.|+++||++|+.+.. +.+.++-.|. .+|+++.++..+.+ + .+|..+.|++++ +|+.+
T Consensus 3 i~~y~~~~C~~C~~~~~-------~l~~~~i~~~--~~di~~~~~~~~~~----~-~~~~~~vP~l~~---~g~~~ 61 (75)
T 1r7h_A 3 ITLYTKPACVQCTATKK-------ALDRAGLAYN--TVDISLDDEARDYV----M-ALGYVQAPVVEV---DGEHW 61 (75)
T ss_dssp EEEEECTTCHHHHHHHH-------HHHHTTCCCE--EEETTTCHHHHHHH----H-HTTCBCCCEEEE---TTEEE
T ss_pred EEEEeCCCChHHHHHHH-------HHHHcCCCcE--EEECCCCHHHHHHH----H-HcCCCccCEEEE---CCeEE
Confidence 46689999999999863 2223333444 45666666544322 2 258889999874 67754
No 272
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10
Probab=96.37 E-value=0.0039 Score=59.02 Aligned_cols=20 Identities=15% Similarity=0.004 Sum_probs=17.5
Q ss_pred cCCcEEEEEe-ccCChhhHhh
Q 004888 137 RDVPIFLSIG-YSTCHWCHVM 156 (725)
Q Consensus 137 e~KpI~l~~g-~~wC~~C~~M 156 (725)
.||+++|+|+ +.||+.|...
T Consensus 42 ~gk~vvl~f~~~~~c~~C~~e 62 (165)
T 1q98_A 42 ASKRKVLNIFPSIDTGVCATS 62 (165)
T ss_dssp TTSEEEEEECSCSCSSCCCHH
T ss_pred CCCeEEEEEECCCCCCccHHH
Confidence 5899999998 8999999854
No 273
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C
Probab=96.36 E-value=0.0034 Score=64.64 Aligned_cols=21 Identities=10% Similarity=0.001 Sum_probs=18.3
Q ss_pred cCCcEEEEEe-ccCChhhHhhh
Q 004888 137 RDVPIFLSIG-YSTCHWCHVME 157 (725)
Q Consensus 137 e~KpI~l~~g-~~wC~~C~~Me 157 (725)
.||+|+|.|+ ++||..|...-
T Consensus 90 kGK~vvL~F~~a~~cp~C~~el 111 (254)
T 3tjj_A 90 RGKYLVFFFYPLDFTFVCPTEI 111 (254)
T ss_dssp TTSEEEEEECSCTTCSSCCHHH
T ss_pred CCCeEEEEEECCCCCCchHHHH
Confidence 5899999998 99999998643
No 274
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Probab=96.34 E-value=0.0042 Score=61.25 Aligned_cols=93 Identities=16% Similarity=0.164 Sum_probs=52.5
Q ss_pred cCCcEEEEEe-ccCChhhHhhhhhccCCHHHHHHHh--cCcEEEEEcCCCCcchHHHH-----------------HHHHH
Q 004888 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVY-----------------MTYVQ 196 (725)
Q Consensus 137 e~KpI~l~~g-~~wC~~C~~Me~e~f~d~eVa~~ln--~~FV~VkvD~ee~pd~~~~y-----------------~~~~q 196 (725)
.||+|+|.|+ +.||..|...- +++.++.+ +++..|-|..+. ++..+.| .+..+
T Consensus 77 ~Gk~vvl~F~~~~~c~~C~~e~------~~l~~l~~~~~~v~vv~Is~D~-~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 149 (200)
T 3zrd_A 77 AGKRKVLNIFPSIDTGVCAASV------RKFNQLAGELENTVVLCISSDL-PFAQSRFCGAEGLSNVITLSTLRGADFKQ 149 (200)
T ss_dssp TTSEEEEEECSCCCCSCCCHHH------HHHHHHHHTSTTEEEEEEESSC-HHHHTTCTTTTTCTTEEEEETTSCTHHHH
T ss_pred CCCcEEEEEECCCCCchhHHHH------HHHHHHHHHhCCCEEEEEECCC-HHHHHHHHHHcCCCCceEEecCchHHHHH
Confidence 5899999998 68999998754 34444443 345555444331 1110001 01111
Q ss_pred HhcCCC-------C--cCcEEEecCCCCccccc-cccCCCCCCCcchHHHHHHHH
Q 004888 197 ALYGGG-------G--WPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKV 241 (725)
Q Consensus 197 ~~~g~~-------G--~P~~vfl~pdG~~i~~~-tY~p~~~~~~~~~F~~~L~~i 241 (725)
. +|+. | .|+++++|++|++++.. +.-.. ..+.+.++|+.+
T Consensus 150 ~-ygv~~~~~~~~g~~~p~~~lID~~G~I~~~~~~~~~~----~~~~~~~~l~~L 199 (200)
T 3zrd_A 150 A-YGVAITEGPLAGLTARAVVVLDGQDNVIYSELVNEIT----TEPNYDAALAAL 199 (200)
T ss_dssp H-TTCEECSSTTTTSBCCEEEEECTTSBEEEEEECSBTT----SCCCHHHHHHHH
T ss_pred H-hCceeecccCCCccccEEEEECCCCeEEEEEecCCcc----cCCCHHHHHHhh
Confidence 1 2332 3 59999999999998652 21111 234677777654
No 275
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=96.31 E-value=0.0067 Score=51.37 Aligned_cols=59 Identities=8% Similarity=0.142 Sum_probs=36.0
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhc-CCCCcCcEEEecCCCCccc
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALY-GGGGWPLSVFLSPDLKPLM 218 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~-g~~G~P~~vfl~pdG~~i~ 218 (725)
++.|+++||++|+.+.. +.+.++-.|.. +|++ ++....+ ...+ |..++|+.++ +|+.+.
T Consensus 8 v~~y~~~~C~~C~~~~~-------~L~~~~i~~~~--vdv~--~~~~~~l----~~~~~~~~~vP~l~~---~g~~i~ 67 (89)
T 2klx_A 8 IILYTRPNCPYCKRARD-------LLDKKGVKYTD--IDAS--TSLRQEM----VQRANGRNTFPQIFI---GDYHVG 67 (89)
T ss_dssp EEEESCSCCTTTHHHHH-------HHHHHTCCEEE--ECSC--HHHHHHH----HHHHHSSCCSCEEEE---TTEECC
T ss_pred EEEEECCCChhHHHHHH-------HHHHcCCCcEE--EECC--HHHHHHH----HHHhCCCCCcCEEEE---CCEEEe
Confidence 66789999999998862 22333445554 4554 3222222 2234 7889999754 677653
No 276
>1tf4_A T. fusca endo/EXO-cellulase E4 catalytic domain and cellulose-binding domain; glycosyl hydrolase, cellulose degradation; 1.90A {Thermobifida fusca} SCOP: a.102.1.2 b.2.2.2 PDB: 1js4_A 3tf4_A* 4tf4_A*
Probab=96.29 E-value=0.036 Score=64.04 Aligned_cols=84 Identities=13% Similarity=0.098 Sum_probs=56.8
Q ss_pred cHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCC----Ccc
Q 004888 545 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPG----FLD 620 (725)
Q Consensus 545 WNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~----~le 620 (725)
-.+.++.|||.|++++++.+ ..| -.++|+.|+++.+|..++- |. |.++.. ..+ ...
T Consensus 152 ~a~~~AAAlAaAS~vfk~~D--~~y--------A~~~L~~Ak~~~~fA~~~~-----g~----y~~~~~-~~~~Y~s~s~ 211 (605)
T 1tf4_A 152 VAAETAAAMAASSIVFADDD--PAY--------AATLVQHAKQLYTFADTYR-----GV----YSDCVP-AGAFYNSWSG 211 (605)
T ss_dssp HHHHHHHHHHHHHHHHTTTC--HHH--------HHHHHHHHHHHHHHHHHSC-----CC----GGGTST-THHHHCCSSC
T ss_pred HHHHHHHHHHHHHhhccccC--HHH--------HHHHHHHHHHHHHHHHHcC-----CC----cCCCCC-ccccccCCCC
Confidence 34788999999999998521 112 2578999999999988652 11 111111 100 012
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004888 621 DYAFLISGLLDLYEFGSGTKWLVWAIEL 648 (725)
Q Consensus 621 DyA~li~aLL~LYe~Tgd~~yL~~A~~L 648 (725)
..-.++.|.+.||.+|||..||+.|++.
T Consensus 212 ~~DEl~WAAawLy~ATgd~~Yl~~a~~~ 239 (605)
T 1tf4_A 212 YQDELVWGAYWLYKATGDDSYLAKAEYE 239 (605)
T ss_dssp SHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 2346788999999999999999999874
No 277
>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG; 2.37A {Trichoderma reesei} SCOP: a.102.2.1
Probab=96.24 E-value=0.11 Score=58.68 Aligned_cols=260 Identities=15% Similarity=0.102 Sum_probs=133.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhcc---CCCCceeeeccCCCccccccccccCcceEEech
Q 004888 374 HFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMI---GPGGEIFSAEDADSAETEGATRKKEGAFYVWTS 450 (725)
Q Consensus 374 HFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~---~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~ 450 (725)
+-+-.+-.-+-|.-=|..-.++|||+.|.++|+++.+.|.+.-. ...|-+-..+|+++.. .-+..+.|.
T Consensus 170 ~~~~~~Ae~gsl~LEF~~LS~lTGd~~Y~~~a~~~~~~l~~~~~~~~~~~GL~p~~i~~~tg~-------~~~~~~~~G- 241 (503)
T 1hcu_A 170 ASSNNVAEIGSLVLEWTRLSDLTGNPQYAQLAQKGESYLLNPKGSPEAWPGLIGTFVSTSNGT-------FQDSSGSWS- 241 (503)
T ss_dssp CSEEEHHHHTTSHHHHHHHHHHHSCTHHHHHHHHHHHHHHSCCBSCCSBTTBCCSEEETTTCC-------BCCCEECSS-
T ss_pred CCccccccccceeeehHHHHHHhCChHHHHHHHHHHHHHHhhhcccCCCCCceeeEEeCCCCc-------ccCCeeeec-
Confidence 33445666666666788889999999999999999999986321 2346555577766521 112222222
Q ss_pred HHHHHHhhhh-HHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhh
Q 004888 451 KEVEDILGEH-AILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVR 529 (725)
Q Consensus 451 ~Ei~~~lg~~-~~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~e~~~~~l~~~r~kL~~~R 529 (725)
+.+|. .+.+.+.|=+..+. ...+ .+-..+.++.+++.|+...
T Consensus 242 -----a~~DS~YEYLlK~~il~g~~-------------------------~~~y-------~~m~~~a~~~i~~~l~~~~ 284 (503)
T 1hcu_A 242 -----GLMDSFYEYLIKMYLYDPVA-------------------------FAHY-------KDRWVLGADSTIGHLGSHP 284 (503)
T ss_dssp -----TTTHHHHHHHHHHHHHCTTT-------------------------THHH-------HHHHHHHHHHHHHHTEECB
T ss_pred -----CCCccHHHHHHHHHHHcCCc-------------------------hHHH-------HHHHHHHHHHHHHHhccCC
Confidence 11121 23333333332100 0001 1223345555566665221
Q ss_pred ccCCC-CCCCc-----------chhhhcHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhcc
Q 004888 530 SKRPR-PHLDD-----------KVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLY 597 (725)
Q Consensus 530 ~~R~~-P~lDd-----------KiitsWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~ 597 (725)
..+.. .++.+ ...+-|-|+ ++-++.+.+. +++++.|+++++-....+.
T Consensus 285 ~~~~~~~~v~~~~~~~~~~~~~hL~cF~~G~----~aLgg~~~~~----------------~~~~~~a~~L~~tC~~~y~ 344 (503)
T 1hcu_A 285 STRKDLTFLSSYNGQSTSPNSGHLASFGGGN----FILGGILLNE----------------QKYIDFGIKLASSYFGTYT 344 (503)
T ss_dssp TTCTTCCEECEEETTEEESEEEGGGGGHHHH----HHHHHHHHTC----------------HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEeccCCccccccchhhhhhhHH----HHhcCccccc----------------HHHHHHHHHHHHHHHHHHH
Confidence 11110 11111 112222232 3333455443 7899999999987655443
Q ss_pred ccCCCeEEEE--ecCCC--C--CCC----------CC---cchH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004888 598 DEQTHRLQHS--FRNGP--S--KAP----------GF---LDDY---AFLISGLLDLYEFGSGTKWLVWAIELQNTQDEL 655 (725)
Q Consensus 598 d~~~G~l~~s--~~~g~--~--~~~----------~~---leDy---A~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~ 655 (725)
...+|..-.. +.... . ... ++ ...| -.+|+.+.-||++|||+.|++++.++++.+..+
T Consensus 345 ~~~tGl~PE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~y~LRPE~iES~fylyR~TgD~~yre~gw~if~ai~k~ 424 (503)
T 1hcu_A 345 QTASGIGPEGFAWVDSVTGAGGSPPSSQSGFYSSAGFWVTAPYYILRPETLESLYYAYRVTGDSKWQDLAWEALSAIEDA 424 (503)
T ss_dssp TSSSSCCCSEEECCBTTTCCSCCCCGGGHHHHHHHSCEEEECCBCCCCHHHHHHHHHHHHHCBHHHHHHHHHHHHHHHHH
T ss_pred hCccCCCceEEEeecCccccccCCcccccccccCCCceeccccccCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3223432211 11111 0 000 00 0012 178999999999999999999999999999998
Q ss_pred ccccCCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHhhCC
Q 004888 656 FLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 706 (725)
Q Consensus 656 F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~t~~ 706 (725)
..-+ .||=... + |........+..++|- .+|+-|=-|+-+..+
T Consensus 425 ~r~~--~Gya~i~-d---V~~~~~~~~~D~meSF--~laETLKYlYLLFsd 467 (503)
T 1hcu_A 425 CRAG--SAYSSIN-D---VTQANGGGASDDMESF--WFAEALKYAYLIFAE 467 (503)
T ss_dssp HEET--TEECCBS-C---TTSTTCSCBCSCBCHH--HHHTHHHHHHHHHSC
T ss_pred Hhhc--cCCcccc-c---ccCCCCCCcCCccchH--HHHHHHHHHheeccC
Confidence 7532 3442211 1 1000001223334443 566666667766654
No 278
>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*
Probab=96.16 E-value=0.0093 Score=55.02 Aligned_cols=78 Identities=10% Similarity=0.196 Sum_probs=43.4
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhh-hhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCc
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVM-EVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~M-e~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~ 206 (725)
.+.++.+.++++ ++.|+.+||++|+.+ .. .+..... + +-.|..|.||.++. - ....+.+...+|..++|.
T Consensus 27 ~~~v~~~i~~~~--Vvvy~~~~Cp~C~~a~k~-~L~~~~~-~--~i~~~~vdvd~~~~--~-~~~~~~L~~~~g~~tVP~ 97 (129)
T 3ctg_A 27 VAHVKDLIGQKE--VFVAAKTYCPYCKATLST-LFQELNV-P--KSKALVLELDEMSN--G-SEIQDALEEISGQKTVPN 97 (129)
T ss_dssp HHHHHHHHHHSS--EEEEECTTCHHHHHHHHH-HHTTSCC-C--GGGEEEEEGGGSTT--H-HHHHHHHHHHHSCCSSCE
T ss_pred HHHHHHHHcCCC--EEEEECCCCCchHHHHHH-HHHhcCc-c--CCCcEEEEccccCC--H-HHHHHHHHHHhCCCCCCE
Confidence 445555555555 556789999999987 42 2222110 0 03466666666532 1 112222334458889998
Q ss_pred EEEecCCCCcc
Q 004888 207 SVFLSPDLKPL 217 (725)
Q Consensus 207 ~vfl~pdG~~i 217 (725)
+ |+ +|+.+
T Consensus 98 v-fi--~g~~i 105 (129)
T 3ctg_A 98 V-YI--NGKHI 105 (129)
T ss_dssp E-EE--TTEEE
T ss_pred E-EE--CCEEE
Confidence 5 44 46655
No 279
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=96.16 E-value=0.018 Score=55.54 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=19.4
Q ss_pred cCCcEEEEEeccCChhhHhhhhh
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVE 159 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e 159 (725)
.+|.+++.|+..||+||+.++..
T Consensus 24 ~a~v~i~~f~d~~Cp~C~~~~~~ 46 (193)
T 2rem_A 24 AGKIEVVEIFGYTCPHCAHFDSK 46 (193)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHH
T ss_pred CCCeEEEEEECCCChhHhhhhHH
Confidence 35678999999999999999853
No 280
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=96.14 E-value=0.0072 Score=51.32 Aligned_cols=66 Identities=26% Similarity=0.276 Sum_probs=41.2
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCccc
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 218 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~ 218 (725)
++.|+++||++|+++. .+.+.++-.|..+.||..+..+ .......+...+|..+.|++++ +|+.+.
T Consensus 14 v~ly~~~~Cp~C~~~~-------~~L~~~gi~~~~~~v~~~~~~~-~~~~~~~l~~~~g~~~vP~l~~---~g~~i~ 79 (92)
T 3ic4_A 14 VLMYGLSTCPHCKRTL-------EFLKREGVDFEVIWIDKLEGEE-RKKVIEKVHSISGSYSVPVVVK---GDKHVL 79 (92)
T ss_dssp SEEEECTTCHHHHHHH-------HHHHHHTCCCEEEEGGGCCHHH-HHHHHHHHHHHHSSSCSCEEEE---TTEEEE
T ss_pred EEEEECCCChHHHHHH-------HHHHHcCCCcEEEEeeeCCccc-hHHHHHHHHHhcCCCCcCEEEE---CCEEEe
Confidence 4558899999999986 3444556678887777532111 1111122223358889999887 676653
No 281
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A
Probab=96.10 E-value=0.22 Score=56.58 Aligned_cols=279 Identities=16% Similarity=0.141 Sum_probs=154.7
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCccccccccccCcceEEec
Q 004888 370 WHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWT 449 (725)
Q Consensus 370 W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt 449 (725)
-.|+-||- |-|+|-.++-||.+++|+.|++.|.+..+-|+--|-.|.|-=|..++-...... ..+..+. + .
T Consensus 163 ~~VsvFET----tIR~LGGLLSAy~Lsgd~~lL~kA~dLadrLlpAFdTptgiP~~~vnl~~g~~~--~~~~~~~--s-~ 233 (538)
T 1x9d_A 163 VDVNLFES----TIRILGGLLSAYHLSGDSLFLRKAEDFGNRLMPAFRTPSKIPYSDVNIGTGVAH--PPRWTSD--S-T 233 (538)
T ss_dssp CEEEHHHH----HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHGGGGCSTTSCCCSEEETTTCCEE--CCTTCSE--E-E
T ss_pred ceeehhhe----ehhhhhhhhhHHHhcCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeeecccccC--CCCcCCC--c-e
Confidence 34666775 556888888899999999999999999999998886666644544442210000 0000000 0 0
Q ss_pred hHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhh
Q 004888 450 SKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVR 529 (725)
Q Consensus 450 ~~Ei~~~lg~~~~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~e~~~~~l~~~r~kL~~~R 529 (725)
.+|+-.+ .. .|. .++...| .+...+..+.+.+.|.+.|
T Consensus 234 lAe~GSl---~L-EF~------------------------------------~LS~LTG--d~~Y~~~a~r~~~~l~~~~ 271 (538)
T 1x9d_A 234 VAEVTSI---QL-EFR------------------------------------ELSRLTG--DKKFQEAVEKVTQHIHGLS 271 (538)
T ss_dssp HHHHHSS---HH-HHH------------------------------------HHHHHHC--CTHHHHHHHHHHHHHHTCS
T ss_pred eccccce---ee-eHH------------------------------------HHHHHhC--CcHHHHHHHHHHHHHHhcc
Confidence 1111000 00 000 1222222 1334455566667776555
Q ss_pred ccCCCCCCCcch-----------hhhcHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHh
Q 004888 530 SKRPRPHLDDKV-----------IVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRH 595 (725)
Q Consensus 530 ~~R~~P~lDdKi-----------itsWNal~I~---aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~ 595 (725)
. +....+-..| ..+|.|..-+ =|.+.+..+|.. .+.|++.=.++++-|++|
T Consensus 272 ~-~~~GL~p~~i~~~tG~~~~~~~~~lGa~~DS~YEYLlK~~il~g~~--------------d~~y~~my~~a~~~i~~~ 336 (538)
T 1x9d_A 272 G-KKDGLVPMFINTHSGLFTHLGVFTLGARADSYYEYLLKQWIQGGKQ--------------ETQLLEDYVEAIEGVRTH 336 (538)
T ss_dssp C-CBTTBCCSEEETTTCCEESTTEECSSTTTHHHHHHHHHHHHHTTSC--------------CHHHHHHHHHHHHHHHHH
T ss_pred c-CCCCCcceEEeCCCCCccCCcceeecCCccHHHHHHHHHHHHcCCc--------------hHHHHHHHHHHHHHHHHH
Confidence 2 1111111111 2345555444 467778777731 278999999999999999
Q ss_pred ccc-c-CCCeEEE-EecCCCCCCCCCcchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHccccCCCc----c-cc
Q 004888 596 LYD-E-QTHRLQH-SFRNGPSKAPGFLDDYAFLISGLLDLYEF-GSGTKWLVWAIELQNTQDELFLDREGGG----Y-FN 666 (725)
Q Consensus 596 l~d-~-~~G~l~~-s~~~g~~~~~~~leDyA~li~aLL~LYe~-Tgd~~yL~~A~~L~~~~~~~F~D~~~Gg----y-f~ 666 (725)
+.. + ..+.++- ...+|.. ....+--+.++-|++.|.-. ...+++++.|++|.+.+...+....+|- | |.
T Consensus 337 L~~~~~~~~~~~v~~~~~g~~--~~~~~hL~cF~gG~~aLgg~~~~~~~~l~~a~~L~~tC~~~Y~~~~tGl~PE~~~~~ 414 (538)
T 1x9d_A 337 LLRHSEPSKLTFVGELAHGRF--SAKMDHLVCFLPGTLALGVYHGLPASHMELAQELMETCYQMNRQMETGLSPEIVHFN 414 (538)
T ss_dssp TEEECTTTCCEEECEEETTEE--ECEEEGGGGHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTSTTSCCCSEEECC
T ss_pred hccCCCCCCceEEEeccCCcc--CcccchHhhhhhhHHHhcCcccCcHHHHHHHHHHHHHHHHHHHhcccCCCceEEEec
Confidence 853 2 1233332 2333321 12233445667788877664 4567899999999998877664433332 2 22
Q ss_pred cCC--CCCccccccccCCCCCCC-ChHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhh
Q 004888 667 TTG--EDPSVLLRVKEDHDGAEP-SGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLYLRQ 724 (725)
Q Consensus 667 t~~--~~~~~~~r~k~~~D~a~P-S~Nsv~a~~LlrL~~~t~~~~~~~y~~~A~~~l~~~~ 724 (725)
... ......++. .|...| -+ -.++.+.-|+++||+ +.|++.+.++++++.
T Consensus 415 ~~~~~~~~~~~~~~---~d~~y~LRP--E~IES~fylyR~TgD---~~yre~gw~~f~ai~ 467 (538)
T 1x9d_A 415 LYPQPGRRDVEVKP---ADRHNLLRP--ETVESLFYLYRVTGD---RKYQDWGWEILQSFS 467 (538)
T ss_dssp SSCCTTCCSCBCCG---GGCCBCCCC--HHHHHHHHHHHHHCC---THHHHHHHHHHHHHH
T ss_pred cCCCccccceeeec---cCcccCCCh--HHHHHHHHHHHHhCC---HHHHHHHHHHHHHHH
Confidence 210 000111110 111100 01 478899999999998 799999999999874
No 282
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A
Probab=95.99 E-value=0.073 Score=57.86 Aligned_cols=115 Identities=5% Similarity=-0.133 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEE--ec----------CCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004888 579 KEYMEVAESAASFIRRHLYDEQTHRLQHS--FR----------NGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAI 646 (725)
Q Consensus 579 ~~yl~~A~~~a~~l~~~l~d~~~G~l~~s--~~----------~g~~~~~~~leDyA~li~aLL~LYe~Tgd~~yL~~A~ 646 (725)
+++++.++++.+++.+...++++|.++-. .+ .......+.-.+-+=.+.+++.+|++++|++|++.|+
T Consensus 226 ~~~~~~~~~~~~~l~~~~~~~~~g~~wp~g~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~d~~~~~~a~ 305 (409)
T 2g0d_A 226 EASLSALQKIIFIYEKFELERKKQFLWKDGLVADELKKEKVIREASFIRDAWCYGGPGISLLYLYGGLALDNDYFVDKAE 305 (409)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGTTCCCSEECHHHHHHTSCCSCCSCCCCCSSSSHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCcCCCccccHhhhcccccccCCCCCCcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 78999999999999777665444542211 11 1111233445555667888999999999999999999
Q ss_pred HHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 004888 647 ELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEH 718 (725)
Q Consensus 647 ~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~t~~~~~~~y~~~A~~ 718 (725)
+..+.+.++ ++.. .+...--|.+=.+..+++++..+++ +.|.+.|.+
T Consensus 306 ~~~~~~~~~------~~~~----------------~~~~LCHG~aG~~~~l~~l~~~~~~---~~~~~~a~~ 352 (409)
T 2g0d_A 306 KILESAMQR------KLGI----------------DSYMICHGYSGLIEICSLFKRLLNT---KKFDSYMEE 352 (409)
T ss_dssp HHHHHHHHH------CTTC----------------CSCCTTTSHHHHHHHHHHHHHHHCC---CTTHHHHHH
T ss_pred HHHHHHHHh------ccCC----------------CCCCCCChHHHHHHHHHHHHHHhCC---HHHHHHHHH
Confidence 999888775 1000 0111123445556778889999987 468887776
No 283
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=95.93 E-value=0.015 Score=56.15 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=19.6
Q ss_pred cCCcEEEEEeccCChhhHhhhh
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEV 158 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~ 158 (725)
.+|++++.|+..||+||+.++.
T Consensus 21 ~~~~~i~~f~d~~Cp~C~~~~~ 42 (195)
T 2znm_A 21 SGKIEVLEFFGYFCVHCHHFDP 42 (195)
T ss_dssp SSSEEEEEEECTTSCCTTSSCH
T ss_pred CCCcEEEEEECCCChhHHHHhH
Confidence 4788899999999999999974
No 284
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=95.92 E-value=0.018 Score=50.47 Aligned_cols=65 Identities=17% Similarity=0.168 Sum_probs=40.6
Q ss_pred CcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhc-CCCCcCcEEEecCCCCcc
Q 004888 139 VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALY-GGGGWPLSVFLSPDLKPL 217 (725)
Q Consensus 139 KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~-g~~G~P~~vfl~pdG~~i 217 (725)
+.-++.|+++||++|+++. .+.+.++-.|..| |+++.|+..+.+ ..++ |..++|+++ + +|+.+
T Consensus 15 ~~~v~vy~~~~Cp~C~~ak-------~~L~~~~i~y~~i--dI~~~~~~~~~l----~~~~~g~~~vP~if-i--~g~~i 78 (99)
T 3qmx_A 15 SAKIEIYTWSTCPFCMRAL-------ALLKRKGVEFQEY--CIDGDNEAREAM----AARANGKRSLPQIF-I--DDQHI 78 (99)
T ss_dssp CCCEEEEECTTCHHHHHHH-------HHHHHHTCCCEEE--ECTTCHHHHHHH----HHHTTTCCCSCEEE-E--TTEEE
T ss_pred CCCEEEEEcCCChhHHHHH-------HHHHHCCCCCEEE--EcCCCHHHHHHH----HHHhCCCCCCCEEE-E--CCEEE
Confidence 3445668999999999986 3334445456554 555556544333 3344 788999764 4 56666
Q ss_pred cc
Q 004888 218 MG 219 (725)
Q Consensus 218 ~~ 219 (725)
.+
T Consensus 79 gG 80 (99)
T 3qmx_A 79 GG 80 (99)
T ss_dssp ES
T ss_pred eC
Confidence 43
No 285
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1
Probab=95.83 E-value=0.31 Score=54.68 Aligned_cols=275 Identities=16% Similarity=0.123 Sum_probs=151.3
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCccccccccccCcceEEech
Q 004888 371 HVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTS 450 (725)
Q Consensus 371 ~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~ 450 (725)
.|+-||- |-|+|-.++-||.+++|+.|++.|.+..+.|+--+-.|.|-=|..++-..... +.+ -|..
T Consensus 100 ~vsvFET----tIR~LGGLLSAy~Lsgd~~lL~kA~dLad~LlpAFdTptgiP~~~vnl~~g~~-----~~~----~~~~ 166 (478)
T 1nxc_A 100 EVSVFEV----NIRFVGGLLSAYYLSGEEIFRKKAVELGVKLLPAFHTPSGIPWALLNMKSGIG-----RNW----PWAS 166 (478)
T ss_dssp EEEHHHH----HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHGGGGCSSSSCCCSEEETTTCCE-----ECC----TTSG
T ss_pred ccchhhe----ehhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccccC-----CCC----cccC
Confidence 4555775 56788889999999999999999999999999888666664454444221000 000 0100
Q ss_pred HHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCc----hHHHHhcCCCHHHHHHHHHHHHHHHH
Q 004888 451 KEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDS----SASASKLGMPLEKYLNILGECRRKLF 526 (725)
Q Consensus 451 ~Ei~~~lg~~~~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~----~~~a~~~g~~~e~~~~~l~~~r~kL~ 526 (725)
.|.+++....+. ..++...|- +...+..+.+++.|.
T Consensus 167 --------------------------------------~~~s~lAe~gsl~LEF~~LS~lTGd--~~Y~~~a~~~~~~l~ 206 (478)
T 1nxc_A 167 --------------------------------------GGSSILAEFGTLHLEFMHLSHLSGD--PVFAEKVMKIRTVLN 206 (478)
T ss_dssp --------------------------------------GGCEEHHHHTTCHHHHHHHHHHHCC--THHHHHHHHHHHHHH
T ss_pred --------------------------------------CCCcccccccchhhhHHHHHHHHCC--hHHHHHHHHHHHHHH
Confidence 000111111110 112223332 233444455555555
Q ss_pred hhhcc-CCCC---------CCCcchhhhcHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHH
Q 004888 527 DVRSK-RPRP---------HLDDKVIVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIR 593 (725)
Q Consensus 527 ~~R~~-R~~P---------~lDdKiitsWNal~I~---aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~ 593 (725)
+.+.. -.-| +.+. ..+|.|..-+ =|.+.+..+|.. .+.|++.-.++++.|+
T Consensus 207 ~~~~~~GL~p~~i~~~tg~~~~~--~~~~Ga~~DS~YEYLlK~~il~g~~--------------d~~~~~m~~~a~~~i~ 270 (478)
T 1nxc_A 207 KLDKPEGLYPNYLNPSSGQWGQH--HVSVGGLGDSFYEYLLKAWLMSDKT--------------DLEAKKMYFDAVQAIE 270 (478)
T ss_dssp HSCCGGGCCCSEECTTTCCBCSC--EECSSTTTHHHHHHHHHHHHHTTTC--------------CHHHHHHHHHHHHHHH
T ss_pred hcCCCCCccccccCCCCCCccCc--eeeecCCCchHHHHHHHHHHHcCCc--------------hHHHHHHHHHHHHHHH
Confidence 43321 0000 1111 2345555544 366777777642 2789999999999999
Q ss_pred HhccccC-CCeEEEE-ecCCCCCCCCCcchHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHccccCCCc---c
Q 004888 594 RHLYDEQ-THRLQHS-FRNGPSKAPGFLDDYAFLISGLLDLYEFGSG----TKWLVWAIELQNTQDELFLDREGGG---Y 664 (725)
Q Consensus 594 ~~l~d~~-~G~l~~s-~~~g~~~~~~~leDyA~li~aLL~LYe~Tgd----~~yL~~A~~L~~~~~~~F~D~~~Gg---y 664 (725)
+|+.... +|..+-. ..+|.. ....+--+.++-|++.|.-..++ +++++.|++|.+.+...+....+|- .
T Consensus 271 ~~l~~~~~~~~~~v~~~~~~~~--~~~~~hL~cF~gG~~aLg~~~~~~~~~~~~l~~a~~l~~tC~~~y~~~~tgl~PE~ 348 (478)
T 1nxc_A 271 THLIRKSSGGLTYIAEWKGGLL--EHKMGHLTCFAGGMFALGADGAPEARAQHYLELGAEIARTCHESYNRTYVKLGPEA 348 (478)
T ss_dssp HHTEEECTTSCEEECEEETTEE--ECEEETGGGGHHHHHHHTSTTSCTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCCSE
T ss_pred HHhcccCCCCcEEEEeccCCcc--cccccchhhhhHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHhcccCCCCeE
Confidence 9986422 2333322 333321 11223335556678777543332 6899999999999977665433331 1
Q ss_pred cccCCCCCccccccccCCCCCCC-ChHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhh
Q 004888 665 FNTTGEDPSVLLRVKEDHDGAEP-SGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLYLRQ 724 (725)
Q Consensus 665 f~t~~~~~~~~~r~k~~~D~a~P-S~Nsv~a~~LlrL~~~t~~~~~~~y~~~A~~~l~~~~ 724 (725)
|..........++. .|...| - --.++.+.-|+++||+ +.|++.+.++++++.
T Consensus 349 ~~~~~~~~~~~~~~---~~~~y~LR--PE~iES~fylyR~TgD---~~yre~gw~~f~ai~ 401 (478)
T 1nxc_A 349 FRFDGGVEAIATRQ---NEKYYILR--PEVIETYMYMWRLTHD---PKYRTWAWEAVEALE 401 (478)
T ss_dssp EESSTTCSSBCCSG---GGCCBCSC--CHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHH
T ss_pred EEeccCcccccccc---cccccCCC--hHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHH
Confidence 11111111110110 111100 0 1367889999999997 899999999999874
No 286
>2yik_A Endoglucanase; hydrolase; 2.10A {Clostridium thermocellum}
Probab=95.82 E-value=0.038 Score=63.90 Aligned_cols=86 Identities=12% Similarity=0.054 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC--CCCCCcchHH
Q 004888 546 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDDYA 623 (725)
Q Consensus 546 Nal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~--~~~~~leDyA 623 (725)
.+.++.+||.|++++++.+ ..| -.++|+.|+++.+|..++- |.+......+.. ...++.|
T Consensus 219 a~~~AAAlAaAS~vfk~~D--~~y--------A~~~L~~Ak~~~~fA~~~~-----~~y~~~~~~~~~~Y~ss~~~D--- 280 (611)
T 2yik_A 219 ISATAASLAINYMNFKDTD--PQY--------AAKSLDYAKALFDFAEKNP-----KGVVQGEDGPKGYYGSSKWQD--- 280 (611)
T ss_dssp HHHHHHHHHHHHHHHTTTC--HHH--------HHHHHHHHHHHHHHHHHSC-----CCCCCGGGTTTTTSCCCCSHH---
T ss_pred HHHHHHHHHHHHHhccccC--HHH--------HHHHHHHHHHHHHHHHHcC-----CcccCCCcccCcCCCCCCccc---
Confidence 4778999999999997632 112 2578999999999988753 111111111111 1123334
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004888 624 FLISGLLDLYEFGSGTKWLVWAIELQ 649 (725)
Q Consensus 624 ~li~aLL~LYe~Tgd~~yL~~A~~L~ 649 (725)
.+++|.++||.+|||..|++.|++..
T Consensus 281 El~WAAawLy~ATgd~~Yl~~a~~~~ 306 (611)
T 2yik_A 281 DYCWAAAWLYLATQNEHYLDEAFKYY 306 (611)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45788999999999999999998754
No 287
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}
Probab=95.76 E-value=0.029 Score=51.74 Aligned_cols=76 Identities=13% Similarity=0.204 Sum_probs=47.2
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHH--HhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcC
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKL--LNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~--ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P 205 (725)
.+.++++.+.++ ++-|+.+||++|+...+ -+.+. ++-.|..|.||.++.++- ...++...+|...+|
T Consensus 4 ~~~~~~ii~~~~--Vvvysk~~Cp~C~~ak~------lL~~~~~~~v~~~~idid~~~d~~~---~~~~l~~~~G~~tVP 72 (127)
T 3l4n_A 4 QKEYSLILDLSP--IIIFSKSTCSYSKGMKE------LLENEYQFIPNYYIIELDKHGHGEE---LQEYIKLVTGRGTVP 72 (127)
T ss_dssp HHHHHHHHTSCS--EEEEECTTCHHHHHHHH------HHHHHEEEESCCEEEEGGGSTTHHH---HHHHHHHHHSCCSSC
T ss_pred HHHHHHHHccCC--EEEEEcCCCccHHHHHH------HHHHhcccCCCcEEEEecCCCCHHH---HHHHHHHHcCCCCcc
Confidence 456777776666 55677899999999862 11121 233578888887644322 223334446888889
Q ss_pred cEEEecCCCCcc
Q 004888 206 LSVFLSPDLKPL 217 (725)
Q Consensus 206 ~~vfl~pdG~~i 217 (725)
.++| +|+.|
T Consensus 73 ~IfI---~G~~I 81 (127)
T 3l4n_A 73 NLLV---NGVSR 81 (127)
T ss_dssp EEEE---TTEEC
T ss_pred eEEE---CCEEE
Confidence 8864 56655
No 288
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=95.72 E-value=0.018 Score=48.74 Aligned_cols=61 Identities=15% Similarity=0.252 Sum_probs=36.6
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCccc
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 218 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~ 218 (725)
++.|+++||++|+.+.. +.+..+-.|..+.| ++.++..+.+ ...++..++|+. |. +|+.+.
T Consensus 8 v~ly~~~~C~~C~~~~~-------~L~~~~i~~~~~di--~~~~~~~~~l----~~~~~~~~vP~l-~~--~g~~i~ 68 (92)
T 2khp_A 8 VIIYTRPGCPYCARAKA-------LLARKGAEFNEIDA--SATPELRAEM----QERSGRNTFPQI-FI--GSVHVG 68 (92)
T ss_dssp EEEEECTTCHHHHHHHH-------HHHHTTCCCEEEES--TTSHHHHHHH----HHHHTSSCCCEE-EE--TTEEEE
T ss_pred EEEEECCCChhHHHHHH-------HHHHcCCCcEEEEC--CCCHHHHHHH----HHHhCCCCcCEE-EE--CCEEEc
Confidence 56789999999998763 22223335655544 4445443333 223478899964 44 566553
No 289
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=95.55 E-value=0.034 Score=49.24 Aligned_cols=70 Identities=9% Similarity=0.116 Sum_probs=39.8
Q ss_pred HHHHhhcCCcEEEEEec----cCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCc
Q 004888 131 FAEARKRDVPIFLSIGY----STCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (725)
Q Consensus 131 l~~Ak~e~KpI~l~~g~----~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~ 206 (725)
++.+-+.+| |+|+..+ +||++|+.+.+ +.+.++-.|. .+|+++.|++.+.+ ...+|..++|.
T Consensus 8 ~~~~i~~~~-vvvy~~g~~~~~~Cp~C~~ak~-------~L~~~~i~~~--~vdi~~~~~~~~~l----~~~~g~~~vP~ 73 (109)
T 1wik_A 8 LKVLTNKAS-VMLFMKGNKQEAKCGFSKQILE-------ILNSTGVEYE--TFDILEDEEVRQGL----KTFSNWPTYPQ 73 (109)
T ss_dssp HHHHHTTSS-EEEEESSTTTCCCSSTHHHHHH-------HHHHTCSCEE--EEESSSCHHHHHHH----HHHHSCCSSCE
T ss_pred HHHHhccCC-EEEEEecCCCCCCCchHHHHHH-------HHHHcCCCeE--EEECCCCHHHHHHH----HHHhCCCCCCE
Confidence 344444444 6665443 99999998862 3233333444 55665556544333 33457788997
Q ss_pred EEEecCCCCcc
Q 004888 207 SVFLSPDLKPL 217 (725)
Q Consensus 207 ~vfl~pdG~~i 217 (725)
+ |+ +|+.+
T Consensus 74 i-fi--~g~~i 81 (109)
T 1wik_A 74 L-YV--RGDLV 81 (109)
T ss_dssp E-EC--SSSEE
T ss_pred E-EE--CCEEE
Confidence 4 44 56655
No 290
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} SCOP: a.102.2.1 PDB: 1g6i_A*
Probab=95.53 E-value=0.39 Score=54.22 Aligned_cols=277 Identities=14% Similarity=0.135 Sum_probs=150.8
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHcc------CChHHHHHHHHHHHHHHHhcc-CCCCceeeeccCCCccccccccccCc
Q 004888 371 HVPHFEKMLYDQGQLANVYLDAFSLT------KDVFYSYICRDILDYLRRDMI-GPGGEIFSAEDADSAETEGATRKKEG 443 (725)
Q Consensus 371 ~vPHFEKMLyDNA~Ll~~ya~Ay~~t------~d~~y~~vA~~~~~fl~~~m~-~~~Ggfysa~DADs~~~~~~~~~~EG 443 (725)
.|+-||- |-|+|--++-||.++ +|+.|++.|.+..+-|+--|- .|.|-=|..++-.... . +.+
T Consensus 94 ~VsvFET----tIR~LGGLLSAy~Ls~~~~~~~d~~lL~kA~dLadrLlpAFd~TptgiP~~~vnl~~g~----~-~~~- 163 (511)
T 1dl2_A 94 EVNVFET----TIRMLGGLLSAYHLSDVLEVGNKTVYLNKAIDLGDRLALAFLSTQTGIPYSSINLHSGQ----A-VKN- 163 (511)
T ss_dssp EEEHHHH----HHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHGGGGSSSSSCCCSEEETTTCC----E-ECC-
T ss_pred eechhhe----ehhhhhhhhhHHHhcccccCCCcHHHHHHHHHHHHHHHHhhcCCCCCCCCceeecccCC----C-CCC-
Confidence 4666775 445788888888888 999999999999999998886 6777545544422100 0 000
Q ss_pred ceEEechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCc----hHHHHhcCCCHHHHHHHHH
Q 004888 444 AFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDS----SASASKLGMPLEKYLNILG 519 (725)
Q Consensus 444 ayY~wt~~Ei~~~lg~~~~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~----~~~a~~~g~~~e~~~~~l~ 519 (725)
-|. .|.+.+....+. ..++...| .+...+..+
T Consensus 164 ---~~~---------------------------------------~~~s~~Ae~gSl~LEF~~LS~LTG--d~~Y~~~a~ 199 (511)
T 1dl2_A 164 ---HAD---------------------------------------GGASSTAEFTTLQMEFKYLAYLTG--NRTYWELVE 199 (511)
T ss_dssp ---SSG---------------------------------------GGCEEHHHHSSCHHHHHHHHHHHT--CHHHHHHHH
T ss_pred ---CCC---------------------------------------CcccccccccceeeeHHHHHHHHC--ChHHHHHHH
Confidence 000 000111100000 01222222 233444555
Q ss_pred HHHHHHHhhhcc--CCC---C-CCCcc------hhhhcHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHH
Q 004888 520 ECRRKLFDVRSK--RPR---P-HLDDK------VIVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEV 584 (725)
Q Consensus 520 ~~r~kL~~~R~~--R~~---P-~lDdK------iitsWNal~I~---aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~ 584 (725)
.+.+.|.+.|.. +.. | ++|-. -..+|.|..-+ =|.+.+..++| +.|++.
T Consensus 200 r~~~~l~~~~~~~~~~~GL~p~~i~~~tg~~~~~~~~lGa~~DS~YEYLlK~~il~~d----------------~~y~~m 263 (511)
T 1dl2_A 200 RVYEPLYKNNDLLNTYDGLVPIYTFPDTGKFGASTIRFGSRGDSFYEYLLKQYLLTHE----------------TLYYDL 263 (511)
T ss_dssp TTHHHHHHHHTHHHHHTTCCBSEECTTTCCBCSCCBCSSTTTHHHHHHHHHHHHHHCC----------------HHHHHH
T ss_pred HHHHHHHhcccccCCCCCCcceEEcCCCCCccCCeeeecCCCCcHHHHHHHHHHhcCC----------------HHHHHH
Confidence 555556554411 111 0 11110 12345555433 36777777765 679999
Q ss_pred HHHHHHHHHHhccccC--CCeEEEE-ecCCC-CCCCCCcchHHHHHHHHHHHHHHcC------------CHHHHHHHHHH
Q 004888 585 AESAASFIRRHLYDEQ--THRLQHS-FRNGP-SKAPGFLDDYAFLISGLLDLYEFGS------------GTKWLVWAIEL 648 (725)
Q Consensus 585 A~~~a~~l~~~l~d~~--~G~l~~s-~~~g~-~~~~~~leDyA~li~aLL~LYe~Tg------------d~~yL~~A~~L 648 (725)
=.++++-|++|+.... .+.++.. ...+. .......+--+.++-|++.|.-..+ ++++++.|++|
T Consensus 264 ~~~a~~~i~~~L~~~~~~~~~~~~~~~~~~~~g~~~~~~~hL~cF~gG~~aLg~~~~~~~~~a~~~~~~~~~~~~~a~~l 343 (511)
T 1dl2_A 264 YRKSMEGMKKHLLAQSKPSSLWYIGEREQGLHGQLSPKMDHLVCFMGGLLASGSTEGLSIHEARRRPFFSKSDWDLAKGI 343 (511)
T ss_dssp HHHHHHHHHHHTEEECTTTCCEEECBBTTCTTSCCBCEEEGGGGGHHHHHHHHHHTTCCHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCCcEEEEEeecCCCCccccccchhhhchhHHHHhccccCCChhhhhhcccccHHHHHHHHHH
Confidence 9999999999986421 2333332 22111 1112223344566778888876333 34799999999
Q ss_pred HHHHHHHccccCCCc----c-cccCCCC---------CccccccccCCCCCCCChHHHHHHHHHHHHHhhCCCCchHHHH
Q 004888 649 QNTQDELFLDREGGG----Y-FNTTGED---------PSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQ 714 (725)
Q Consensus 649 ~~~~~~~F~D~~~Gg----y-f~t~~~~---------~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~t~~~~~~~y~~ 714 (725)
.+.+...+....+|- | |...... ....++ ..|...|= ---.++.+.-|+++||+ +.|++
T Consensus 344 ~~tC~~~y~~~~tGl~PE~~~~~~~~~~~~~~~~~~~~d~~~~---~~d~~y~L-RPE~iES~fylyR~TgD---~~yre 416 (511)
T 1dl2_A 344 TDTCYQMYKQSSSGLAPEIVVFNDGNIKQDGWWRSSVGDFFVK---PLDRHNLQ-RPETVESIMFMYHLSHD---HKYRE 416 (511)
T ss_dssp HHHHHHHHHTSTTSCCCSEEEECCSCCC-CCCEECSSSSEEEC---GGGCCBCC-CCHHHHHHHHHHHHHCC---THHHH
T ss_pred HHHHHHHHhcCccCCCceEEEeecCCccccccccccccceeec---cCCcccCc-CHHHHHHHHHHHHHcCC---HHHHH
Confidence 999888765433442 2 2211100 000000 01111000 00378899999999998 79999
Q ss_pred HHHHHHHHhh
Q 004888 715 NAEHSLYLRQ 724 (725)
Q Consensus 715 ~A~~~l~~~~ 724 (725)
.+.++++++.
T Consensus 417 ~gw~~f~ai~ 426 (511)
T 1dl2_A 417 WGAEIATSFF 426 (511)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 291
>2xfg_A Endoglucanase 1; hydrolase-sugar binding protein complex, family-9 glycoside hydrolase, hydrolase, sugar binding protein; 1.68A {Clostridium thermocellum}
Probab=95.49 E-value=0.14 Score=57.18 Aligned_cols=85 Identities=20% Similarity=0.181 Sum_probs=57.8
Q ss_pred cHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC--CC-CCCcch
Q 004888 545 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS--KA-PGFLDD 621 (725)
Q Consensus 545 WNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~--~~-~~~leD 621 (725)
-.+.++.+||.|++++++.+ ..| -.++|+.|+++.+|..++--.- + ...+.. .. .++.
T Consensus 173 ~a~e~AAAlAaAS~vfk~~D--~~y--------A~~~L~~Ak~l~~fA~~~~~~~--~-----~~~~~~~Y~s~s~~~-- 233 (466)
T 2xfg_A 173 VVAETSAALAIASIIFKKVD--GEY--------SKECLKHAKELFEFADTTKSDD--G-----YTAANGFYNSWSGFY-- 233 (466)
T ss_dssp HHHHHHHHHHHHHHHTTTTC--HHH--------HHHHHHHHHHHHHHHHHHCCCT--T-----CCTTTTTSCCSSCSH--
T ss_pred HHHHHHHHHHHHHHhccccC--HHH--------HHHHHHHHHHHHHHHHhcCCcC--C-----CCccccccCCCCCCc--
Confidence 34788999999999998622 112 2578999999999998764210 0 001110 11 2333
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004888 622 YAFLISGLLDLYEFGSGTKWLVWAIELQ 649 (725)
Q Consensus 622 yA~li~aLL~LYe~Tgd~~yL~~A~~L~ 649 (725)
-.++.|.+.||.+|||..|++.|++..
T Consensus 234 -DEl~WAAawLy~ATgd~~Yl~~a~~~~ 260 (466)
T 2xfg_A 234 -DELSWAAVWLYLATNDSSYLDKAESYS 260 (466)
T ss_dssp -HHHHHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred -hHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 356888999999999999999998743
No 292
>2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative conformations, modulation of activity, glycoprot glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A {Penicillium citrinum} SCOP: a.102.2.1 PDB: 2ri8_A* 1kkt_A* 1kre_A* 1krf_A*
Probab=95.21 E-value=0.85 Score=51.07 Aligned_cols=280 Identities=14% Similarity=0.062 Sum_probs=150.2
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHcc-CC-----------hHHHHHHHHHHHHHHHhccCCCCceeeeccCCCcccccc
Q 004888 370 WHVPHFEKMLYDQGQLANVYLDAFSLT-KD-----------VFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGA 437 (725)
Q Consensus 370 W~vPHFEKMLyDNA~Ll~~ya~Ay~~t-~d-----------~~y~~vA~~~~~fl~~~m~~~~Ggfysa~DADs~~~~~~ 437 (725)
-.|+-||- |-|+|-.++-||.++ ++ +.+++.|.+..+-|+--+-.|.|-=|..++-...+.
T Consensus 81 ~~vsvFET----tIR~LGGLLSAy~Ls~g~~~~~~~~~~~~~~lL~kA~dLadrLlpAF~TptgiP~~~vnl~~~~~--- 153 (475)
T 2ri9_A 81 DTVSLFET----TIRYLAGMLSGYDLLQGPAKNLVDNQDLIDGLLDQSRNLADVLKFAFDTPSGVPYNNINITSHGN--- 153 (475)
T ss_dssp SCEEHHHH----HHHHHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHHHHGGGGCSSSSCCCSEECTTTCCB---
T ss_pred Cccchhhe----ehHhHhHHhHHHHhccCccccccccccchHHHHHHHHHHHHHHHHhhcCCCCCCCceeecccCCC---
Confidence 34566775 456788888888888 76 799999999999999888767775455444222100
Q ss_pred ccccCcceEEechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHH
Q 004888 438 TRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNI 517 (725)
Q Consensus 438 ~~~~EGayY~wt~~Ei~~~lg~~~~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~e~~~~~ 517 (725)
...+. + ..+|+-.+ .. .| ..++...| .+...+.
T Consensus 154 --~~~~~--~-~~Ae~gsl---~L-EF------------------------------------~~LS~lTG--d~~Y~~~ 186 (475)
T 2ri9_A 154 --DGATT--N-GLAVTGTL---VL-EW------------------------------------TRLSDLTG--DEEYAKL 186 (475)
T ss_dssp --CCCSE--E-EHHHHHSC---HH-HH------------------------------------HHHHHHHS--CTHHHHH
T ss_pred --cCCCc--c-chhccccc---ee-eH------------------------------------HHHHHHhC--CHHHHHH
Confidence 00000 0 01111000 00 00 01222222 2334556
Q ss_pred HHHHHHHHHhhh--c-cCCCC----CCCcc------hhhhcHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHH
Q 004888 518 LGECRRKLFDVR--S-KRPRP----HLDDK------VIVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEY 581 (725)
Q Consensus 518 l~~~r~kL~~~R--~-~R~~P----~lDdK------iitsWNal~I~---aLa~A~~vl~d~~~~~~~~~~~~~~~~~~y 581 (725)
.+.+.+.|.+.| . .+... ++|-. -..+|.|..-+ =|.+.+..+|+. .+.|
T Consensus 187 a~~~~~~l~~~~~~~~~~~~GL~p~~i~~~tg~~~~~~~~~Ga~~DS~YEYLlK~~il~g~~--------------~~~~ 252 (475)
T 2ri9_A 187 SQKAESYLLKPQPSSSEPFPGLVGSSININDGQFADSRVSWNGGDDSFYEYLIKMYVYDPKR--------------FETY 252 (475)
T ss_dssp HHHHHHHHHSCSSGGGCSBTTBCCSEEETTTCCBCCCCBCSSTTTHHHHHHHHHHHHHCTTT--------------THHH
T ss_pred HHHHHHHHHhhccccccCCCCCcceEEeCCCCcccCCceeecCCcchHHHHHHHHHHHcCCc--------------hHHH
Confidence 666777777655 2 11111 11110 12344454434 477788888763 2678
Q ss_pred HHHHHHHHHHHHHhccccC---CCeEE-EEecCCCCCCCCCcchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHc
Q 004888 582 MEVAESAASFIRRHLYDEQ---THRLQ-HSFRNGPSKAPGFLDDYAFLISGLLDLYE-FGSGTKWLVWAIELQNTQDELF 656 (725)
Q Consensus 582 l~~A~~~a~~l~~~l~d~~---~G~l~-~s~~~g~~~~~~~leDyA~li~aLL~LYe-~Tgd~~yL~~A~~L~~~~~~~F 656 (725)
++.=.++++-|++|+.... .+.++ ..+.++.. . ...+--+.++-|++.|.- ..+.+++++.|++|.+.+...+
T Consensus 253 ~~m~~~a~~~i~~~l~~~~~~~~~~~~v~~~~~~~~-~-~~~~hL~cF~~G~~aLgg~~~~~~~~~~~a~~l~~tC~~~y 330 (475)
T 2ri9_A 253 KDRWVLAAESTIKHLKSHPKSRPDLTFLSSYSNRNY-D-LSSQHLTCFDGGSFLLGGTVLDRQDFIDFGLELVDGCEATY 330 (475)
T ss_dssp HHHHHHHHHHHHHHTEECCSSCTTCCEECEEETTEE-E-CEEETGGGGHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCceEEEeccCCcc-c-cccchHHHhHHHHHHhcccccccHHHHHHHHHHHHHHHHHH
Confidence 8888889999988885421 12222 22322221 1 112223444556666554 4467899999999999987766
Q ss_pred cccCCCc----ccccCCCCCc-c-cccccc---CCCCCCC-ChHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhh
Q 004888 657 LDREGGG----YFNTTGEDPS-V-LLRVKE---DHDGAEP-SGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLYLRQ 724 (725)
Q Consensus 657 ~D~~~Gg----yf~t~~~~~~-~-~~r~k~---~~D~a~P-S~Nsv~a~~LlrL~~~t~~~~~~~y~~~A~~~l~~~~ 724 (725)
....+|- |.......+. . ....+. ..+...| -+ -.++.+.-|+++||+ +.|++.+.++++++.
T Consensus 331 ~~~~tGl~PE~~~~~~~~~~~~~~~~~~~~g~~~~~~~y~LRP--E~iES~fylyR~TgD---~~yr~~gw~~f~ai~ 403 (475)
T 2ri9_A 331 NSTLTKIGPDSWGWDPKKVPSDQKEFYEKAGFYISSGSYVLRP--EVIESFYYAHRVTGK---EIYRDWVWNAFVAIN 403 (475)
T ss_dssp HTSSSSCCCSEEECCTTCCCGGGHHHHHHHSCEEEECCBCSCC--HHHHHHHHHHHHHCC---HHHHHHHHHHHHHHH
T ss_pred HhcccCCCCcEEEeecCcccccccccccCCCceecccccCCCh--HHHHHHHHHHHHhCC---HHHHHHHHHHHHHHH
Confidence 4433342 2211111100 0 000000 0000000 00 478899999999997 899999999999874
No 293
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=95.10 E-value=0.046 Score=58.17 Aligned_cols=133 Identities=8% Similarity=-0.065 Sum_probs=70.5
Q ss_pred cCCcEEEEEe-ccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHH--------------HHhcCC
Q 004888 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYV--------------QALYGG 201 (725)
Q Consensus 137 e~KpI~l~~g-~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~--------------q~~~g~ 201 (725)
.||+|+|+|+ .+||+.|..- -..| .+.-.+++..|=|..+ .++-.+.|.+.. ...+|+
T Consensus 23 ~Gk~vvl~F~p~~~tp~C~~e-~~~~-----~~~~~~~~~v~gis~D-~~~~~~~f~~~~~l~fp~l~D~~~~v~~~ygv 95 (322)
T 4eo3_A 23 YGKYTILFFFPKAGTSGSTRE-AVEF-----SRENFEKAQVVGISRD-SVEALKRFKEKNDLKVTLLSDPEGILHEFFNV 95 (322)
T ss_dssp TTSEEEEEECSSTTSHHHHHH-HHHH-----HHSCCTTEEEEEEESC-CHHHHHHHHHHHTCCSEEEECTTCHHHHHTTC
T ss_pred CCCeEEEEEECCCCCCCCHHH-HHHH-----HHHhhCCCEEEEEeCC-CHHHHHHHHHhhCCceEEEEcCchHHHHhcCC
Confidence 5899999998 6899999752 1112 1111124445445443 222222222110 111354
Q ss_pred C----CcCcEEEecCCCCccccccccCCCCCCCcchHHHHHHHHHHHHhhchHHHHHhHHHHHHHHHHHhhcccCCCCCC
Q 004888 202 G----GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDKKRDMLAQSGAFAIEQLSEALSASASSNKLP 277 (725)
Q Consensus 202 ~----G~P~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i~~~~~~~~~~l~~~a~~~~~~l~~~~~~~~~~~~~~ 277 (725)
. ..|+++|+|++|++.+.-.-+.+. ...-++|+.+.+.- +....+.+.|+..-+... =.+
T Consensus 96 ~~~~~~~r~tfiId~~G~i~~~~~~v~~~-----~h~~~~l~~~~~~~--------~~~~~~~~~I~~RRSiR~---F~~ 159 (322)
T 4eo3_A 96 LENGKTVRSTFLIDRWGFVRKEWRRVKVE-----GHVQEVKEALDRLI--------EEDLSLNKHIEWRRARRA---LKK 159 (322)
T ss_dssp EETTEECCEEEEECTTSBEEEEEESCCST-----THHHHHHHHHHHHH--------HHHTSCCHHHHHCCCCCC---BCC
T ss_pred CCCCcCccEEEEECCCCEEEEEEeCCCcc-----ccHHHHHHHHhhhc--------hhhhHHHHHHHhhhccCC---cCc
Confidence 2 368999999999987542112222 25677777776442 122345556655443321 123
Q ss_pred CCCCHHHHHHHHHHH
Q 004888 278 DELPQNALRLCAEQL 292 (725)
Q Consensus 278 ~~~~~~~~~~~~~~l 292 (725)
..++++.++++++.-
T Consensus 160 ~~V~~e~l~~ileaA 174 (322)
T 4eo3_A 160 DRVPREELELLIKAA 174 (322)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHH
Confidence 456778888877654
No 294
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=94.99 E-value=0.051 Score=55.13 Aligned_cols=36 Identities=28% Similarity=0.453 Sum_probs=22.8
Q ss_pred CcCcEEEecCCCCccccccccCCCCCCCcchHHHHHHHHH
Q 004888 203 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (725)
Q Consensus 203 G~P~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i~ 242 (725)
..|+++|+||+|++.....| |... + ..+-++|+.|.
T Consensus 126 ~~p~~fiID~~G~I~~~~~~-~~~~--g-r~~~eilr~l~ 161 (233)
T 2v2g_A 126 TCRAVFIIGPDKKLKLSILY-PATT--G-RNFSEILRVID 161 (233)
T ss_dssp ECEEEEEECTTSBEEEEEEE-CTTB--C-CCHHHHHHHHH
T ss_pred ccceEEEECCCCEEEEEEec-CCCC--C-CCHHHHHHHHH
Confidence 46999999999998865433 2111 1 14666666655
No 295
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}
Probab=94.91 E-value=0.046 Score=51.55 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=22.3
Q ss_pred HhhcCCcEEEEEeccCChhhHhhhhh
Q 004888 134 ARKRDVPIFLSIGYSTCHWCHVMEVE 159 (725)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~~C~~Me~e 159 (725)
.+..+|.+++.|+-.+|++|++++.+
T Consensus 10 ~~~~a~~~vv~f~D~~Cp~C~~~~~~ 35 (147)
T 3gv1_A 10 VRGNGKLKVAVFSDPDCPFCKRLEHE 35 (147)
T ss_dssp EETTCCEEEEEEECTTCHHHHHHHHH
T ss_pred ecCCCCEEEEEEECCCChhHHHHHHH
Confidence 44567889999999999999999864
No 296
>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG; 2.37A {Trichoderma reesei} SCOP: a.102.2.1
Probab=94.88 E-value=0.81 Score=51.61 Aligned_cols=283 Identities=13% Similarity=0.075 Sum_probs=151.5
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHccCCh------------HHHHHHHHHHHHHHHhccCCCCceeeeccCCCccccc
Q 004888 369 RWHVPHFEKMLYDQGQLANVYLDAFSLTKDV------------FYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEG 436 (725)
Q Consensus 369 ~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~------------~y~~vA~~~~~fl~~~m~~~~Ggfysa~DADs~~~~~ 436 (725)
+-.|+-||- |-|+|-.++-||.+++++ .+++.|.+..+-|+--+-.|.|-=|..++-...
T Consensus 93 ~~~VsvFET----tIR~LGGLLSAy~Ls~~~~~~~~~~~~~~~~lL~kA~dLadrLlpAFdTptgiP~~~vnl~~~---- 164 (503)
T 1hcu_A 93 NQGSSVFET----NIRYLGGLLSAYDLLRGPFSSLATNQTLVNSLLRQAQTLANGLKVAFTTPSGVPDPTVFFNPT---- 164 (503)
T ss_dssp TCCEEHHHH----HHHHHHHHHHHHHHHHTTTGGGCCCHHHHHHHHHHHHHHHHHHGGGGCSSSSCCCSEEECSSS----
T ss_pred CCccchhee----ehhhHhHHHHHHHHccCccccccccccchHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccC----
Confidence 334566775 556888888888888885 999999999999998886666644544442210
Q ss_pred cccccCcceEEechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHH
Q 004888 437 ATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLN 516 (725)
Q Consensus 437 ~~~~~EGayY~wt~~Ei~~~lg~~~~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~e~~~~ 516 (725)
. ...++. .+ ..+|+ |. |++ ....++...| .+...+
T Consensus 165 ~-~~~~~~-~~-~~Ae~--------------------gs------------------l~L--EF~~LS~lTG--d~~Y~~ 199 (503)
T 1hcu_A 165 V-RRSGAS-SN-NVAEI--------------------GS------------------LVL--EWTRLSDLTG--NPQYAQ 199 (503)
T ss_dssp C-EECCCS-EE-EHHHH--------------------TT------------------SHH--HHHHHHHHHS--CTHHHH
T ss_pred C-CCCCCC-cc-ccccc--------------------cc------------------eee--ehHHHHHHhC--ChHHHH
Confidence 0 000000 00 00000 00 000 0001222223 234555
Q ss_pred HHHHHHHHHHhhhc-cCCCC-CCCcc----------hhhhcHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHH
Q 004888 517 ILGECRRKLFDVRS-KRPRP-HLDDK----------VIVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEY 581 (725)
Q Consensus 517 ~l~~~r~kL~~~R~-~R~~P-~lDdK----------iitsWNal~I~---aLa~A~~vl~d~~~~~~~~~~~~~~~~~~y 581 (725)
..+.+.+.|.+.|. ....| .+=.. -..+|.|..-+ =|.+.+..+|+. .+.|
T Consensus 200 ~a~~~~~~l~~~~~~~~~~~GL~p~~i~~~tg~~~~~~~~~Ga~~DS~YEYLlK~~il~g~~--------------~~~y 265 (503)
T 1hcu_A 200 LAQKGESYLLNPKGSPEAWPGLIGTFVSTSNGTFQDSSGSWSGLMDSFYEYLIKMYLYDPVA--------------FAHY 265 (503)
T ss_dssp HHHHHHHHHHSCCBSCCSBTTBCCSEEETTTCCBCCCEECSSTTTHHHHHHHHHHHHHCTTT--------------THHH
T ss_pred HHHHHHHHHHhhhcccCCCCCceeeEEeCCCCcccCCeeeecCCCccHHHHHHHHHHHcCCc--------------hHHH
Confidence 66677777776653 11111 11111 12345454433 477788888763 2678
Q ss_pred HHHHHHHHHHHHHhccccC---CCeEE-EEecCCCCCCCCCcchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHc
Q 004888 582 MEVAESAASFIRRHLYDEQ---THRLQ-HSFRNGPSKAPGFLDDYAFLISGLLDLYE-FGSGTKWLVWAIELQNTQDELF 656 (725)
Q Consensus 582 l~~A~~~a~~l~~~l~d~~---~G~l~-~s~~~g~~~~~~~leDyA~li~aLL~LYe-~Tgd~~yL~~A~~L~~~~~~~F 656 (725)
++.=.++++-|++|+.... .+.++ ..+.++.. . ...+--+.++-|++.|.- ..+.+++++.|++|.+.+...+
T Consensus 266 ~~m~~~a~~~i~~~l~~~~~~~~~~~~v~~~~~~~~-~-~~~~hL~cF~~G~~aLgg~~~~~~~~~~~a~~L~~tC~~~y 343 (503)
T 1hcu_A 266 KDRWVLGADSTIGHLGSHPSTRKDLTFLSSYNGQST-S-PNSGHLASFGGGNFILGGILLNEQKYIDFGIKLASSYFGTY 343 (503)
T ss_dssp HHHHHHHHHHHHHHTEECBTTCTTCCEECEEETTEE-E-SEEEGGGGGHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCceEEEeccCCcc-c-cccchhhhhhhHHHHhcCcccccHHHHHHHHHHHHHHHHHH
Confidence 8888889999988885321 12222 22322221 1 112223444556666654 4467899999999999988766
Q ss_pred cccCCCc----ccccCCCCCc-ccccc-------ccCCCCCCCChHH---HHHHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 004888 657 LDREGGG----YFNTTGEDPS-VLLRV-------KEDHDGAEPSGNS---VSVINLVRLASIVAGSKSDYYRQNAEHSLY 721 (725)
Q Consensus 657 ~D~~~Gg----yf~t~~~~~~-~~~r~-------k~~~D~a~PS~Ns---v~a~~LlrL~~~t~~~~~~~y~~~A~~~l~ 721 (725)
....+|- |.......+. ..... +.+. ......+- -.++.+.-|+++||+ +.|++.+.++++
T Consensus 344 ~~~~tGl~PE~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~y~LRPE~iES~fylyR~TgD---~~yre~gw~if~ 419 (503)
T 1hcu_A 344 TQTASGIGPEGFAWVDSVTGAGGSPPSSQSGFYSSAGF-WVTAPYYILRPETLESLYYAYRVTGD---SKWQDLAWEALS 419 (503)
T ss_dssp HTSSSSCCCSEEECCBTTTCCSCCCCGGGHHHHHHHSC-EEEECCBCCCCHHHHHHHHHHHHHCB---HHHHHHHHHHHH
T ss_pred HhCccCCCceEEEeecCccccccCCcccccccccCCCc-eeccccccCChHHHHHHHHHHHHhCC---HHHHHHHHHHHH
Confidence 4433442 2111111000 00000 0000 00000011 478899999999997 899999999999
Q ss_pred Hhh
Q 004888 722 LRQ 724 (725)
Q Consensus 722 ~~~ 724 (725)
++.
T Consensus 420 ai~ 422 (503)
T 1hcu_A 420 AIE 422 (503)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 297
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=94.74 E-value=0.14 Score=51.44 Aligned_cols=35 Identities=31% Similarity=0.446 Sum_probs=22.6
Q ss_pred cCcEEEecCCCCccccccccCCCCCCCcchHHHHHHHHH
Q 004888 204 WPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (725)
Q Consensus 204 ~P~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i~ 242 (725)
.|+++|+||+|++.....| |... + ..+-++|+.|.
T Consensus 131 ~p~~fiID~~G~I~~~~~~-~~~~--g-r~~~eil~~i~ 165 (224)
T 1prx_A 131 ARVVFVFGPDKKLKLSILY-PATT--G-RNFDEILRVVI 165 (224)
T ss_dssp CCEEEEECTTSBEEEEEEC-CTTB--C-CCHHHHHHHHH
T ss_pred ceEEEEECCCCEEEEEEec-CCCC--C-CCHHHHHHHHH
Confidence 6999999999998866433 2111 1 14666666665
No 298
>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13
Probab=94.72 E-value=0.015 Score=57.38 Aligned_cols=47 Identities=19% Similarity=0.106 Sum_probs=35.4
Q ss_pred CCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCC
Q 004888 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER 184 (725)
Q Consensus 138 ~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~ 184 (725)
+||++|.|++.||+.|+.|+...=-.+++++.+..+.+.+++|++.+
T Consensus 113 ~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~v~~~~~~v~~~ 159 (197)
T 1un2_A 113 GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFM 159 (197)
T ss_dssp TCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECSSS
T ss_pred CCCEEEEEECCCChhHHHhCcccccHHHHHHHCCCCCEEEEeccCcC
Confidence 68999999999999999998532123455665555778888888764
No 299
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=94.71 E-value=0.035 Score=52.27 Aligned_cols=18 Identities=11% Similarity=-0.075 Sum_probs=16.8
Q ss_pred cCCcEEEEEe-ccCChhhH
Q 004888 137 RDVPIFLSIG-YSTCHWCH 154 (725)
Q Consensus 137 e~KpI~l~~g-~~wC~~C~ 154 (725)
.||+|+|.|+ ++||+.|.
T Consensus 34 ~gk~vvl~f~~~~~c~~C~ 52 (162)
T 1tp9_A 34 AGKKVILFGVPGAFTPTCS 52 (162)
T ss_dssp TTSEEEEEEESCTTCHHHH
T ss_pred CCCcEEEEEeCCCCCCCCC
Confidence 5899999999 89999999
No 300
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1
Probab=94.57 E-value=0.055 Score=60.71 Aligned_cols=100 Identities=10% Similarity=0.023 Sum_probs=64.9
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCc-ccccCCCCCccccccccCCCCCCCChHHHHHHHHH
Q 004888 620 DDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGG-YFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLV 698 (725)
Q Consensus 620 eDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Gg-yf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~Ll 698 (725)
|-..=.+-|||.+|.++||+.+|+.|++|.+.+..-| |..+|- |....-...............++.+.-+.+...+.
T Consensus 105 ETtIR~LGGLLSAy~Lsgd~~lL~kA~dLad~LlpAF-dTptgiP~~~vnl~~g~~~~~~~~~~~~s~lAe~gsl~LEF~ 183 (478)
T 1nxc_A 105 EVNIRFVGGLLSAYYLSGEEIFRKKAVELGVKLLPAF-HTPSGIPWALLNMKSGIGRNWPWASGGSSILAEFGTLHLEFM 183 (478)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHGGGG-CSSSSCCCSEEETTTCCEECCTTSGGGCEEHHHHTTCHHHHH
T ss_pred heehhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHhh-cCCCCCCcceeecccccCCCCcccCCCCcccccccchhhhHH
Confidence 4445578899999999999999999999999998888 555442 21111000000000000000123344445667889
Q ss_pred HHHHhhCCCCchHHHHHHHHHHHHh
Q 004888 699 RLASIVAGSKSDYYRQNAEHSLYLR 723 (725)
Q Consensus 699 rL~~~t~~~~~~~y~~~A~~~l~~~ 723 (725)
+|+++||+ +.|.+.|+++.+.+
T Consensus 184 ~LS~lTGd---~~Y~~~a~~~~~~l 205 (478)
T 1nxc_A 184 HLSHLSGD---PVFAEKVMKIRTVL 205 (478)
T ss_dssp HHHHHHCC---THHHHHHHHHHHHH
T ss_pred HHHHHHCC---hHHHHHHHHHHHHH
Confidence 99999998 78999999887765
No 301
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} SCOP: a.102.2.1 PDB: 1g6i_A*
Probab=94.56 E-value=0.3 Score=55.17 Aligned_cols=152 Identities=9% Similarity=-0.048 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHh------hhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEE--EecCCCCCCCC
Q 004888 546 NGLVISSFARASKIL------KSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQH--SFRNGPSKAPG 617 (725)
Q Consensus 546 Nal~I~aLa~A~~vl------~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~--s~~~g~~~~~~ 617 (725)
|-+++-+|+-|+.+. +| +.+|+.|+++++.|.-.|-...+|.=+. ..+.|.+....
T Consensus 101 tIR~LGGLLSAy~Ls~~~~~~~d----------------~~lL~kA~dLadrLlpAFd~TptgiP~~~vnl~~g~~~~~~ 164 (511)
T 1dl2_A 101 TIRMLGGLLSAYHLSDVLEVGNK----------------TVYLNKAIDLGDRLALAFLSTQTGIPYSSINLHSGQAVKNH 164 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCH----------------HHHHHHHHHHHHHHHGGGGSSSSSCCCSEEETTTCCEECCS
T ss_pred ehhhhhhhhhHHHhcccccCCCc----------------HHHHHHHHHHHHHHHHhhcCCCCCCCCceeecccCCCCCCC
Confidence 678899999999999 55 7899999999999998885133553211 12334321111
Q ss_pred C------cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc--ccCCCcc---cccCCCCCccccccccCCCCCC
Q 004888 618 F------LDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL--DREGGGY---FNTTGEDPSVLLRVKEDHDGAE 686 (725)
Q Consensus 618 ~------leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~--D~~~Ggy---f~t~~~~~~~~~r~k~~~D~a~ 686 (725)
. +-.-+-++.=+..|.++|||++|.+.|+++.+.+.+.-- .+..|-+ .+.... .. . ......
T Consensus 165 ~~~~~s~~Ae~gSl~LEF~~LS~LTGd~~Y~~~a~r~~~~l~~~~~~~~~~~GL~p~~i~~~tg--~~----~-~~~~~l 237 (511)
T 1dl2_A 165 ADGGASSTAEFTTLQMEFKYLAYLTGNRTYWELVERVYEPLYKNNDLLNTYDGLVPIYTFPDTG--KF----G-ASTIRF 237 (511)
T ss_dssp SGGGCEEHHHHSSCHHHHHHHHHHHTCHHHHHHHHTTHHHHHHHHTHHHHHTTCCBSEECTTTC--CB----C-SCCBCS
T ss_pred CCCcccccccccceeeeHHHHHHHHCChHHHHHHHHHHHHHHhcccccCCCCCCcceEEcCCCC--Cc----c-CCeeee
Confidence 1 222233455678899999999999999999888776420 0112322 111110 00 0 000011
Q ss_pred CChHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 004888 687 PSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLYLR 723 (725)
Q Consensus 687 PS~Nsv~a~~LlrL~~~t~~~~~~~y~~~A~~~l~~~ 723 (725)
=++.-..-+-|++.+.++++ +.|++.=++.+.++
T Consensus 238 Ga~~DS~YEYLlK~~il~~d---~~y~~m~~~a~~~i 271 (511)
T 1dl2_A 238 GSRGDSFYEYLLKQYLLTHE---TLYYDLYRKSMEGM 271 (511)
T ss_dssp STTTHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHhcCC---HHHHHHHHHHHHHH
Confidence 12223567889999999854 67776666555443
No 302
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=94.47 E-value=0.032 Score=53.33 Aligned_cols=19 Identities=5% Similarity=-0.393 Sum_probs=16.9
Q ss_pred cCCcEEEEEe-ccCChhhHh
Q 004888 137 RDVPIFLSIG-YSTCHWCHV 155 (725)
Q Consensus 137 e~KpI~l~~g-~~wC~~C~~ 155 (725)
.||+|+|.|+ ++||+.|+.
T Consensus 30 ~Gk~vvl~f~~a~wcp~C~~ 49 (167)
T 2wfc_A 30 AGKKGVLFAVPGAFTPGSSK 49 (167)
T ss_dssp TTSEEEEEEESCTTCHHHHH
T ss_pred CCCcEEEEEeCCCCCCCCCH
Confidence 5889999886 999999997
No 303
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13
Probab=94.41 E-value=0.051 Score=51.52 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=19.8
Q ss_pred cCCcEEEEEeccCChhhHhhhhhc
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVES 160 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~ 160 (725)
.+|..++.|+..+|++|+.++...
T Consensus 26 ~a~v~i~~f~D~~Cp~C~~~~~~~ 49 (175)
T 1z6m_A 26 NAPVKMIEFINVRCPYCRKWFEES 49 (175)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHH
T ss_pred CCCeEEEEEECCCCcchHHHHHHH
Confidence 456678889999999999998644
No 304
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A
Probab=94.26 E-value=0.071 Score=60.51 Aligned_cols=100 Identities=11% Similarity=0.125 Sum_probs=67.3
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCc-ccccCCCCCccccccccCCCCCCCChHHHHHHHH
Q 004888 619 LDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGG-YFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINL 697 (725)
Q Consensus 619 leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Gg-yf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~L 697 (725)
-|-..=.+-|||.+|.++||+.+|+.|++|.+.+..-| |..+|- |-...-..... .... .....+.+.-+.+...+
T Consensus 168 FETtIR~LGGLLSAy~Lsgd~~lL~kA~dLadrLlpAF-dTptgiP~~~vnl~~g~~-~~~~-~~~~s~lAe~GSl~LEF 244 (538)
T 1x9d_A 168 FESTIRILGGLLSAYHLSGDSLFLRKAEDFGNRLMPAF-RTPSKIPYSDVNIGTGVA-HPPR-WTSDSTVAEVTSIQLEF 244 (538)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHGGGG-CSTTSCCCSEEETTTCCE-ECCT-TCSEEEHHHHHSSHHHH
T ss_pred hheehhhhhhhhhHHHhcCCHHHHHHHHHHHHHHHHhh-cCCCCCCcceeeeccccc-CCCC-cCCCceeccccceeeeH
Confidence 34455678899999999999999999999999998887 544542 21111000000 0000 00113344445567889
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHHhh
Q 004888 698 VRLASIVAGSKSDYYRQNAEHSLYLRQ 724 (725)
Q Consensus 698 lrL~~~t~~~~~~~y~~~A~~~l~~~~ 724 (725)
.+|+++||+ +.|.+.|+++...+.
T Consensus 245 ~~LS~LTGd---~~Y~~~a~r~~~~l~ 268 (538)
T 1x9d_A 245 RELSRLTGD---KKFQEAVEKVTQHIH 268 (538)
T ss_dssp HHHHHHHCC---THHHHHHHHHHHHHH
T ss_pred HHHHHHhCC---cHHHHHHHHHHHHHH
Confidence 999999998 789999999988764
No 305
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=94.17 E-value=0.12 Score=51.79 Aligned_cols=35 Identities=31% Similarity=0.409 Sum_probs=22.5
Q ss_pred cCcEEEecCCCCccccccccCCCCCCCcchHHHHHHHHH
Q 004888 204 WPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (725)
Q Consensus 204 ~P~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i~ 242 (725)
+|+++|+||+|++.....| |... + ..+-++|+.|.
T Consensus 128 ~p~~flID~~G~I~~~~~~-~~~~--g-~~~~ell~~i~ 162 (220)
T 1xcc_A 128 CRCLFFISPEKKIKATVLY-PATT--G-RNAHEILRVLK 162 (220)
T ss_dssp CEEEEEECTTSBEEEEEEE-CTTB--C-CCHHHHHHHHH
T ss_pred cceEEEECCCCEEEEEEec-CCCC--C-CCHHHHHHHHH
Confidence 6999999999998866433 2111 1 14666666554
No 306
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A*
Probab=93.93 E-value=0.62 Score=51.67 Aligned_cols=153 Identities=12% Similarity=0.183 Sum_probs=89.7
Q ss_pred cCCCC---CCCCCCCChhHH--HHHHHhhhhcccc-CCCCCcHHHHHHHHHHHHHHHhCCCcccCCCeEEEEec-----C
Q 004888 299 RFGGF---GSAPKFPRPVEI--QMMLYHSKKLEDT-GKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSV-----D 367 (725)
Q Consensus 299 ~~GGf---g~apKFP~~~~l--~~ll~~~~~~~~~-~~~~~~~~~~~~~~~TL~~ma~gGi~D~v~GGF~RYs~-----D 367 (725)
..||| |.--||-.|... ..|+.-+...++. .....-+++++.+..-++=|.+- +...|+||.-.. .
T Consensus 50 l~GGwyDAGD~~Ky~~p~a~t~~~L~w~~~e~~~~~~~~g~~~d~ldeikwg~D~llk~---~~~~~~~y~qVgd~~~Dh 126 (441)
T 1ia6_A 50 LTGGYHDAGDHVKFGLPQGYSAAILGWSLYEFKESFDATGNTTKMLQQLKYFTDYFLKS---HPNSTTFYYQVGEGNADH 126 (441)
T ss_dssp CCCSBCCSSSCCEEHHHHHHHHHHHHHHHHHCHHHHHHTTCHHHHHHHHHHHHHHHHHT---CCSTTCEEEEESCHHHHT
T ss_pred CCCCeeeCCCCCeeccchHHHHHHHHHHHHHhHHHHhhcCcHHHHHHHHHHHHHHHHHh---ccCCCcEEEEeCCCCccc
Confidence 46888 555788776433 2222111110000 00123578888888888888773 233456664322 2
Q ss_pred CCCCCCCCchh---H-H---------H-HHHHHHHHHHHHHccCC------hHHHHHHHHHHHHHHHhcc-CCCCceeee
Q 004888 368 ERWHVPHFEKM---L-Y---------D-QGQLANVYLDAFSLTKD------VFYSYICRDILDYLRRDMI-GPGGEIFSA 426 (725)
Q Consensus 368 ~~W~vPHFEKM---L-y---------D-NA~Ll~~ya~Ay~~t~d------~~y~~vA~~~~~fl~~~m~-~~~Ggfysa 426 (725)
..|..|.-.++ . | | .+..+.+++.|++++++ ..+++.|++..+|..++-- ...+|||.+
T Consensus 127 ~~w~~Pe~~~~~R~~~y~~~~~~p~sd~a~~~AAalAaas~vfk~~D~~yA~~~L~~A~~~~~fa~~~~g~~~~~~~Y~s 206 (441)
T 1ia6_A 127 TYWGAPEEQTGQRPSLYKADPSSPASDILSETSAALTLMYLNYKNIDSAYATKCLNAAKELYAMGKANQGVGNGQSFYQA 206 (441)
T ss_dssp TCCSCGGGCCSCCCCCEEEBTTBCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHSCSCCCCTTTSCC
T ss_pred cccCChhhCCCCCceeeEeCCCCCccHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCC
Confidence 35676643221 1 2 3 67899999999999874 4567889999999988531 123567764
Q ss_pred ccCCCccccccccccCcceEEechHHHHHHhhhh--HHHHHHH
Q 004888 427 EDADSAETEGATRKKEGAFYVWTSKEVEDILGEH--AILFKEH 467 (725)
Q Consensus 427 ~DADs~~~~~~~~~~EGayY~wt~~Ei~~~lg~~--~~l~~~~ 467 (725)
.+ +..- ++|...|+..++|+. .+.+..+
T Consensus 207 s~------------~~DE-~~WAAa~Ly~aTgd~~Yl~~a~~~ 236 (441)
T 1ia6_A 207 TS------------FGDD-LAWAATWLYTATNDSTYITDAEQF 236 (441)
T ss_dssp CC------------SHHH-HHHHHHHHHHHHCCTHHHHHHHHH
T ss_pred CC------------chhH-HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 11 1111 359999999999965 3444443
No 307
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=93.76 E-value=0.11 Score=52.05 Aligned_cols=18 Identities=6% Similarity=-0.029 Sum_probs=16.9
Q ss_pred cCCcEEEEEe-ccCChhhH
Q 004888 137 RDVPIFLSIG-YSTCHWCH 154 (725)
Q Consensus 137 e~KpI~l~~g-~~wC~~C~ 154 (725)
.||+|+|.|+ ++||+.|.
T Consensus 32 ~gk~vvl~f~~a~~cp~C~ 50 (241)
T 1nm3_A 32 DNKTVIVFSLPGAFTPTCS 50 (241)
T ss_dssp TTSEEEEEEESCSSCHHHH
T ss_pred CCCeEEEEEeCCCCCCCCC
Confidence 5899999998 99999999
No 308
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=93.47 E-value=0.1 Score=50.85 Aligned_cols=19 Identities=11% Similarity=0.160 Sum_probs=14.7
Q ss_pred cCCcEEEE-EeccCChhhHh
Q 004888 137 RDVPIFLS-IGYSTCHWCHV 155 (725)
Q Consensus 137 e~KpI~l~-~g~~wC~~C~~ 155 (725)
.||+|+|. |.++||+.|+.
T Consensus 55 ~Gk~vvL~f~~a~wcp~C~~ 74 (184)
T 3uma_A 55 KGKRVVLFAVPGAFTPTCSL 74 (184)
T ss_dssp TTSEEEEEEESCTTCHHHHH
T ss_pred CCCCEEEEEEcCCCCCCcCH
Confidence 47775554 66999999997
No 309
>2v8i_A Pectate lyase; periplasm, beta-elimination, pectin degradation; 1.50A {Yersinia enterocolitica} PDB: 2v8k_A* 2v8j_A
Probab=93.41 E-value=0.19 Score=55.33 Aligned_cols=93 Identities=17% Similarity=0.115 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC-CCCCCcchHHHHH
Q 004888 548 LVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS-KAPGFLDDYAFLI 626 (725)
Q Consensus 548 l~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~-~~~~~leDyA~li 626 (725)
-.+.++++|+++.+| ++....+..++.-+--.=+++.+| ... .......+-.+++
T Consensus 377 ~yll~~vra~~~s~D----------------~~Lw~~~~~ma~~~~lgdi~~~~~--------~~~~~~~~~~~~sp~lL 432 (543)
T 2v8i_A 377 EFLISYARAYAIDND----------------PLLWKVARGIANDQGLGDIGTAPG--------KEVKVNMDTTNSDPYAL 432 (543)
T ss_dssp HHHHHHHHHHHHSCC----------------HHHHHHHHHHHHHTTCEECTTBTT--------BSCEECTTCCCCCHHHH
T ss_pred hhhHHHHHHHHcCCC----------------HHHHHHHHHHHhhCCccccCCCcC--------cccccccCCCCcCHHHH
Confidence 357899999999988 667777777664432111121111 111 1123334557889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCccccc
Q 004888 627 SGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNT 667 (725)
Q Consensus 627 ~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t 667 (725)
.|+|+||++|+++.|++.|.++.+.+.++-++ .|+|-.
T Consensus 433 ~allEL~~atq~~~~l~lA~~~g~nl~~~~~~---~G~Fv~ 470 (543)
T 2v8i_A 433 FALLDLYHASQVADYRKLAEKIGDNIIKIRYI---DGFFMA 470 (543)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEE---TTEECS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhc---CceecC
Confidence 99999999999999999999999998866554 345543
No 310
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=93.38 E-value=0.19 Score=46.82 Aligned_cols=73 Identities=15% Similarity=0.214 Sum_probs=41.7
Q ss_pred HHHHHHHhhcCCcEEEEEec----cCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCC
Q 004888 128 EEAFAEARKRDVPIFLSIGY----STCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGG 203 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~----~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G 203 (725)
.+.++.+-+.+ +|.|+..+ +||++|+...+ .+ +.++-.|..| |+++.|++.+.+ ..++|...
T Consensus 25 ~~~v~~~i~~~-~Vvvy~ks~~~~~~Cp~C~~ak~-~L------~~~gv~y~~v--dI~~d~~~~~~L----~~~~G~~t 90 (135)
T 2wci_A 25 IEKIQRQIAEN-PILLYMKGSPKLPSCGFSAQAVQ-AL------AACGERFAYV--DILQNPDIRAEL----PKYANWPT 90 (135)
T ss_dssp HHHHHHHHHHC-SEEEEESBCSSSBSSHHHHHHHH-HH------HTTCSCCEEE--EGGGCHHHHHHH----HHHHTCCS
T ss_pred HHHHHHHhccC-CEEEEEEecCCCCCCccHHHHHH-HH------HHcCCceEEE--ECCCCHHHHHHH----HHHHCCCC
Confidence 45555555555 46665554 89999998753 22 2223346555 444445544333 33457778
Q ss_pred cCcEEEecCCCCcc
Q 004888 204 WPLSVFLSPDLKPL 217 (725)
Q Consensus 204 ~P~~vfl~pdG~~i 217 (725)
+|.++ + +|+.+
T Consensus 91 vP~Vf-I--~G~~i 101 (135)
T 2wci_A 91 FPQLW-V--DGELV 101 (135)
T ss_dssp SCEEE-E--TTEEE
T ss_pred cCEEE-E--CCEEE
Confidence 88754 4 46655
No 311
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=93.36 E-value=3.8 Score=44.72 Aligned_cols=138 Identities=13% Similarity=0.046 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCcchhhhcHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHH
Q 004888 513 KYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFI 592 (725)
Q Consensus 513 ~~~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l 592 (725)
.+.++++...+++.+.-+. ....|.-+.+.+-|. +..|+.++++++| ++|++.|.++.+.+
T Consensus 47 ~~~~~~~~ll~~~~~~~~~--~~~~~~~lY~G~~Gi-a~~l~~l~~~t~d----------------~~yl~~a~~~l~~~ 107 (411)
T 3e6u_A 47 RLTNKIRELLQQMERGLKS--ADPRDGTGYTGWAGI-AVLYLHLYDVFGD----------------PAYLQLAHGYVKQS 107 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTT--SCTTCCCSSSSHHHH-HHHHHHHHHHHCC----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccc--CCCCCCCeeeChHHH-HHHHHHHHHhcCC----------------HHHHHHHHHHHHHH
Confidence 3445555555555432222 244577777777665 5678888999987 78999999999998
Q ss_pred HHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCC
Q 004888 593 RRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDP 672 (725)
Q Consensus 593 ~~~l~d~~~G~l~~s~~~g~~~~~~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~ 672 (725)
.+.+-+. ..++..+.+=.+..++.+|+.+|+++ .+.++.+.+.+.... . . +
T Consensus 108 ~~~l~~~---------------~~~~~~G~aG~l~~l~~ly~~~g~~~---~a~~~~~~l~~~~~~-~--------~-~- 158 (411)
T 3e6u_A 108 LNCLTKR---------------SITFLCGDAGPLAVAAVLYHKMNNEK---QAEDCITRLIHLNKI-D--------P-H- 158 (411)
T ss_dssp HTTCCSC---------------CCCTTTSTHHHHHHHHHHHHHTTCHH---HHHHHHHHHHGGGGG-C--------T-T-
T ss_pred HHHhccc---------------CCccccCcHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHhcc-c--------c-c-
Confidence 8765321 12445556667778889999999986 445555544443210 0 0 0
Q ss_pred ccccccccCCCCCCCChHHHHHHHHHHHHHhhCCC
Q 004888 673 SVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGS 707 (725)
Q Consensus 673 ~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~t~~~ 707 (725)
......+|.+=.+..|+.|+..++++
T Consensus 159 ---------~~~dll~G~AG~l~aLl~L~~~~~~~ 184 (411)
T 3e6u_A 159 ---------APNEMLYGRIGYIYALLFVNKNFGVE 184 (411)
T ss_dssp ---------CCSSTTTSHHHHHHHHHHHHHHHSSC
T ss_pred ---------CChhhhcCcHHHHHHHHHHHHHcCCc
Confidence 01123568888888899999999874
No 312
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=93.10 E-value=0.28 Score=43.48 Aligned_cols=74 Identities=11% Similarity=0.120 Sum_probs=42.7
Q ss_pred HHHHHHHhhcCCcEEEEEec----cCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCC
Q 004888 128 EEAFAEARKRDVPIFLSIGY----STCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGG 203 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~----~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G 203 (725)
.+.++.+-++++ |+|+.-. +||++|++.. ++.+..+-.|..+.|+ +.|++.+.+ ...+|...
T Consensus 8 ~~~v~~~i~~~~-Vvvy~k~t~~~p~Cp~C~~ak-------~~L~~~gi~~~~~dI~--~~~~~~~~l----~~~~g~~t 73 (109)
T 3ipz_A 8 KDTLEKLVNSEK-VVLFMKGTRDFPMCGFSNTVV-------QILKNLNVPFEDVNIL--ENEMLRQGL----KEYSNWPT 73 (109)
T ss_dssp HHHHHHHHTSSS-EEEEESBCSSSBSSHHHHHHH-------HHHHHTTCCCEEEEGG--GCHHHHHHH----HHHHTCSS
T ss_pred HHHHHHHHccCC-EEEEEecCCCCCCChhHHHHH-------HHHHHcCCCcEEEECC--CCHHHHHHH----HHHHCCCC
Confidence 445556666664 5555443 5999999976 3333344456665554 445543333 33457888
Q ss_pred cCcEEEecCCCCccc
Q 004888 204 WPLSVFLSPDLKPLM 218 (725)
Q Consensus 204 ~P~~vfl~pdG~~i~ 218 (725)
+|..+ + +|+.|.
T Consensus 74 vP~if-i--~g~~iG 85 (109)
T 3ipz_A 74 FPQLY-I--GGEFFG 85 (109)
T ss_dssp SCEEE-E--TTEEEE
T ss_pred CCeEE-E--CCEEEe
Confidence 99654 4 466553
No 313
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=93.07 E-value=0.18 Score=42.34 Aligned_cols=64 Identities=19% Similarity=0.203 Sum_probs=37.5
Q ss_pred EEEecc----CChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCC---CCcchHHHHHHHHHHhcCCC-----CcCcEEEe
Q 004888 143 LSIGYS----TCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE---ERPDVDKVYMTYVQALYGGG-----GWPLSVFL 210 (725)
Q Consensus 143 l~~g~~----wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~e---e~pd~~~~y~~~~q~~~g~~-----G~P~~vfl 210 (725)
+-++.+ ||++|+... ++.+..+-.|..+.||.. +.++..+.+ ...+|.. .+|..++
T Consensus 3 ~iY~~~~~~~~Cp~C~~ak-------~~L~~~gi~y~~idI~~~~~~~~~~~~~~l----~~~~g~~~~~~~tvP~v~i- 70 (87)
T 1aba_A 3 KVYGYDSNIHKCGPCDNAK-------RLLTVKKQPFEFINIMPEKGVFDDEKIAEL----LTKLGRDTQIGLTMPQVFA- 70 (87)
T ss_dssp EEEECCTTTSCCHHHHHHH-------HHHHHTTCCEEEEESCSBTTBCCHHHHHHH----HHHHTCSCCTTCCSCEEEC-
T ss_pred EEEEeCCCCCcCccHHHHH-------HHHHHcCCCEEEEEeeccccccCHHHHHHH----HHHhCCCCCCCCccCEEEE-
Confidence 446889 999999875 233333435665555532 344443332 3334776 7898664
Q ss_pred cCCCCcccc
Q 004888 211 SPDLKPLMG 219 (725)
Q Consensus 211 ~pdG~~i~~ 219 (725)
++|+.+.+
T Consensus 71 -~~g~~igG 78 (87)
T 1aba_A 71 -PDGSHIGG 78 (87)
T ss_dssp -TTSCEEES
T ss_pred -ECCEEEeC
Confidence 67776643
No 314
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=92.91 E-value=0.34 Score=45.58 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.6
Q ss_pred cCCcEEEEEeccCChhhHhhhh
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEV 158 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~ 158 (725)
.++|++|.|..-.|++|+.++.
T Consensus 20 ~~~~~vvEf~dy~Cp~C~~~~~ 41 (184)
T 4dvc_A 20 SSSPVVSEFFSFYCPHCNTFEP 41 (184)
T ss_dssp CSSCEEEEEECTTCHHHHHHHH
T ss_pred CCCCEEEEEECCCCHhHHHHhH
Confidence 4689999999999999999974
No 315
>2xfg_A Endoglucanase 1; hydrolase-sugar binding protein complex, family-9 glycoside hydrolase, hydrolase, sugar binding protein; 1.68A {Clostridium thermocellum}
Probab=92.66 E-value=4.7 Score=44.99 Aligned_cols=111 Identities=13% Similarity=0.115 Sum_probs=69.6
Q ss_pred cCCCC---CCCCCCCChhHH--HHHH-Hhh---hhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCeEEEEecC--
Q 004888 299 RFGGF---GSAPKFPRPVEI--QMML-YHS---KKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVD-- 367 (725)
Q Consensus 299 ~~GGf---g~apKFP~~~~l--~~ll-~~~---~~~~~~~~~~~~~~~~~~~~~TL~~ma~gGi~D~v~GGF~RYs~D-- 367 (725)
.-||| |.--||-.|... ..|+ -+. ..... ...-+++++.+..-++=|.+ . +...|+||.-..|
T Consensus 70 lsGGwyDAGD~~Ky~~~~a~t~~~L~w~~~e~~~~~~~---~~~~~d~ldeikwg~D~llk--~-~~~~~~~y~qVgd~~ 143 (466)
T 2xfg_A 70 LTGGWYDAGDHVKFNLPMSYSAAMLGWAVYEYEDAFKQ---SGQYNHILNNIKWACDYFIK--C-HPEKDVYYYQVGDGH 143 (466)
T ss_dssp CCCSBCCSSSCCEEHHHHHHHHHHHHHHHHHCHHHHHH---TTCHHHHHHHHHHHHHHHHH--T-CSBTTEEEEEESCHH
T ss_pred CCCCceeCCCCCeeccccHHHHHHHHHHHHHhHHHHhc---CCCchHHHHHHHHHHHHHHH--h-ccCCCcEEEEeCCCC
Confidence 46888 555788776322 1222 111 11111 12347888989988888888 3 3456778864444
Q ss_pred ---CCCCCCCCc---h----------hHHHHHHHHHHHHHHHHccCC------hHHHHHHHHHHHHHHHh
Q 004888 368 ---ERWHVPHFE---K----------MLYDQGQLANVYLDAFSLTKD------VFYSYICRDILDYLRRD 415 (725)
Q Consensus 368 ---~~W~vPHFE---K----------MLyDNA~Ll~~ya~Ay~~t~d------~~y~~vA~~~~~fl~~~ 415 (725)
..|..|.-. . .--..+..+.+++.|++++++ ..+++.|++..+|..++
T Consensus 144 ~Dh~~W~~pe~~~~~R~~y~i~~~~pgsd~a~e~AAAlAaAS~vfk~~D~~yA~~~L~~Ak~l~~fA~~~ 213 (466)
T 2xfg_A 144 ADHAWWGPAEVMPMERPSYKVDRSSPGSTVVAETSAALAIASIIFKKVDGEYSKECLKHAKELFEFADTT 213 (466)
T ss_dssp HHHTCCSCGGGCCSCCCEEEEESSSCCHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCcccCCCCCceeEecCCCCccHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHhc
Confidence 258755211 1 122268899999999999975 45677889999999874
No 316
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase, hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp} PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A*
Probab=92.30 E-value=1.5 Score=49.74 Aligned_cols=119 Identities=11% Similarity=0.159 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCC----CCCC--------CchhHHHHHHHHHHHHHHHHccCC----
Q 004888 335 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERW----HVPH--------FEKMLYDQGQLANVYLDAFSLTKD---- 398 (725)
Q Consensus 335 ~~~~~~~~~TL~~ma~gGi~D~v~GGF~RYs~D~~W----~vPH--------FEKMLyDNA~Ll~~ya~Ay~~t~d---- 398 (725)
+.+++.+..-++=|.+ .++.-.|++|.-..|..| ..|+ +.+---.++.++.+++.|++++++
T Consensus 188 ~d~ldeikwg~D~llk--~~~~~~g~~y~~v~~~~w~g~~~~Pe~~~~~R~~~~~~t~~~~~~AAalA~as~vf~~~D~~ 265 (537)
T 3gzk_A 188 PPALEVAREEIAWLLT--MQDPATGGVYHKVTTPSFPPLDTRPEDDDAPLVLSPISYAATATFCAAMAHAALVYRPFDPA 265 (537)
T ss_dssp CHHHHHHHHHHHHHHH--TBCTTTCCBBSEEECSSCCCTTCCGGGCCSCEEECCBCHHHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHh--cccCCCCeEEEEecCCCcCCCCcCcccCCCcceEeecCCcHHHHHHHHHHHHHHhhcccCHH
Confidence 5788888888888876 555334555544456778 4443 223334489999999999999998
Q ss_pred --hHHHHHHHHHHHHHHHhccC----C---CCceeeeccCCCccccccccccCcceEEechHHHHHHhhhh--HHHHHHH
Q 004888 399 --VFYSYICRDILDYLRRDMIG----P---GGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH--AILFKEH 467 (725)
Q Consensus 399 --~~y~~vA~~~~~fl~~~m~~----~---~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~lg~~--~~l~~~~ 467 (725)
..|++.|+++++|+.++... + .+|+|.+.+ -.-| .+|...|+..++|+. .+.+..+
T Consensus 266 yA~~~L~~A~~~~~fa~~~~~~~~~~~~~~~~~~Y~~~~----------~~De---l~wAA~~Ly~aTgd~~Yl~~a~~~ 332 (537)
T 3gzk_A 266 LSSCCADAARRAYAWLGAHEMQPFHNPDGILTGEYGDAE----------LRDE---LLWASCALLRMTGDSAWARVCEPL 332 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCCCCCCTTCCSCCCCCSC----------CHHH---HHHHHHHHHHHHCCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccccCCcccccCCcCCCc----------cchH---HHHHHHHHHHHhCCHHHHHHHHHh
Confidence 78999999999999986421 1 135554210 0011 479999999998854 3344443
Q ss_pred h
Q 004888 468 Y 468 (725)
Q Consensus 468 y 468 (725)
+
T Consensus 333 ~ 333 (537)
T 3gzk_A 333 L 333 (537)
T ss_dssp H
T ss_pred h
Confidence 3
No 317
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=92.29 E-value=0.34 Score=43.23 Aligned_cols=74 Identities=14% Similarity=0.068 Sum_probs=42.3
Q ss_pred HHHHHHHhhcCCcEEEEEe----ccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCC
Q 004888 128 EEAFAEARKRDVPIFLSIG----YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGG 203 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g----~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G 203 (725)
.+.++..-++++ |+|+.- ++||++|+...+ +.+..+-.|..+ |+++.|++.+.+ ...+|...
T Consensus 6 ~~~v~~~i~~~~-Vvlf~kg~~~~~~Cp~C~~ak~-------~L~~~gi~y~~~--di~~d~~~~~~l----~~~~g~~t 71 (111)
T 3zyw_A 6 NLRLKKLTHAAP-CMLFMKGTPQEPRCGFSKQMVE-------ILHKHNIQFSSF--DIFSDEEVRQGL----KAYSSWPT 71 (111)
T ss_dssp HHHHHHHHTSSS-EEEEESBCSSSBSSHHHHHHHH-------HHHHTTCCCEEE--EGGGCHHHHHHH----HHHHTCCS
T ss_pred HHHHHHHHhcCC-EEEEEecCCCCCcchhHHHHHH-------HHHHcCCCeEEE--ECcCCHHHHHHH----HHHHCCCC
Confidence 455666666554 444432 299999999762 223333356655 444445543333 33457778
Q ss_pred cCcEEEecCCCCccc
Q 004888 204 WPLSVFLSPDLKPLM 218 (725)
Q Consensus 204 ~P~~vfl~pdG~~i~ 218 (725)
+|.+++ +|+.+.
T Consensus 72 vP~ifi---~g~~iG 83 (111)
T 3zyw_A 72 YPQLYV---SGELIG 83 (111)
T ss_dssp SCEEEE---TTEEEE
T ss_pred CCEEEE---CCEEEe
Confidence 898754 566553
No 318
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Probab=92.16 E-value=0.15 Score=49.12 Aligned_cols=19 Identities=11% Similarity=-0.171 Sum_probs=15.1
Q ss_pred cCCcEEEEE-eccCChhhHh
Q 004888 137 RDVPIFLSI-GYSTCHWCHV 155 (725)
Q Consensus 137 e~KpI~l~~-g~~wC~~C~~ 155 (725)
.||+|+|.| .++||+.|..
T Consensus 42 ~gk~vvL~f~pa~wcp~C~~ 61 (173)
T 3mng_A 42 KGKKGVLFGVPGAFTPGCSK 61 (173)
T ss_dssp TTSEEEEEECSCTTCHHHHH
T ss_pred CCCcEEEEEEeCCCCCCCCH
Confidence 578776665 5999999994
No 319
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A
Probab=91.58 E-value=2.7 Score=46.37 Aligned_cols=143 Identities=16% Similarity=0.219 Sum_probs=85.9
Q ss_pred cCCCC---CCCCCCCChhHHH--HH----HHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCeEEEEecCC-
Q 004888 299 RFGGF---GSAPKFPRPVEIQ--MM----LYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDE- 368 (725)
Q Consensus 299 ~~GGf---g~apKFP~~~~l~--~l----l~~~~~~~~~~~~~~~~~~~~~~~~TL~~ma~gGi~D~v~GGF~RYs~D~- 368 (725)
..||| |.--||-.|.... .| +.+...... ..+-+++++.+..-++=|.+ .++. .|+||.-..|.
T Consensus 48 l~GGwyDAGD~~Ky~~p~a~t~~~L~w~~~e~~~~~~~---~~~~~d~ldeikwg~D~llk--~~~~-~g~~y~qVgd~~ 121 (433)
T 1ks8_A 48 LTGGYFDAGDFVKFGFPMAYTATVLAWGLIDFEAGYSS---AGALDDGRKAVKWATDYFIK--AHTS-QNEFYGQVGQGD 121 (433)
T ss_dssp CCCSBCCSSSCCEEHHHHHHHHHHHHHHHHHTHHHHHH---TTCHHHHHHHHHHHHHHHHH--HCCB-TTBEEEEESCHH
T ss_pred CCCceeECCCCCeeccchHHHHHHHHHHHHHhHHhhhc---CCchHHHHHHHHHHHHHHHH--hccC-CCcEEEEeCCCC
Confidence 45888 5557877664332 22 111111111 12346788888887777766 4554 36777533343
Q ss_pred ----CCCCCCCch-------------hHHHHHHHHHHHHHHHHccCC--h----HHHHHHHHHHHHHHHhcc-----CC-
Q 004888 369 ----RWHVPHFEK-------------MLYDQGQLANVYLDAFSLTKD--V----FYSYICRDILDYLRRDMI-----GP- 419 (725)
Q Consensus 369 ----~W~vPHFEK-------------MLyDNA~Ll~~ya~Ay~~t~d--~----~y~~vA~~~~~fl~~~m~-----~~- 419 (725)
.|..|.-.. .-...+..+.+++.|++++++ + .+++.|++..+|..++-- .+
T Consensus 122 ~Dh~~w~~Pe~~~~~R~~y~~~~~~pgs~~a~~~AAalA~as~vfk~~D~~yA~~~L~~A~~~~~fa~~~~~~y~~~~~~ 201 (433)
T 1ks8_A 122 ADHAFWGRPEDMTMARPAYKIDTSRPGSDLAGETAAALAAASIVFRNVDGTYSNNLLTHARQLFDFANNYRGKYSDSITD 201 (433)
T ss_dssp HHHTCCSCGGGCCSCCCEEEECSSSCCHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHSCCCHHHHSGG
T ss_pred cCCcccCCHhhCCCCCceeeccCCCCccHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHCCCcccCCCCc
Confidence 677775221 123478899999999999974 3 467889999999987421 01
Q ss_pred CCceeeeccCCCccccccccccCcceEEechHHHHHHhhhh
Q 004888 420 GGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH 460 (725)
Q Consensus 420 ~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~lg~~ 460 (725)
.+|||.+.+ +..- ++|...|+..++|+.
T Consensus 202 ~~~~Y~ss~------------~~DE-~~WAAa~Ly~aTgd~ 229 (433)
T 1ks8_A 202 ARNFYASAD------------YRDE-LVWAAAWLYRATNDN 229 (433)
T ss_dssp GGGTSCCCC------------THHH-HHHHHHHHHHHHCCH
T ss_pred CCCCCCCCC------------cccH-HHHHHHHHHHHhCCH
Confidence 145665411 1111 379999999999864
No 320
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=91.58 E-value=0.26 Score=49.61 Aligned_cols=101 Identities=11% Similarity=0.020 Sum_probs=54.5
Q ss_pred cCCcEEEEEe-ccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCC---------------------cc---hHHHH
Q 004888 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER---------------------PD---VDKVY 191 (725)
Q Consensus 137 e~KpI~l~~g-~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~---------------------pd---~~~~y 191 (725)
.||+|+|+|+ ++||+.|.. |-..|++ ...++-+.+.+.|-|..+.. |- .+...
T Consensus 51 ~GK~vVL~FyP~d~TpvCt~-E~~~f~~-~~~~f~~~g~~vigiS~Ds~~sh~aw~~~~~~~~~~~~l~fpllsD~~~~v 128 (216)
T 3sbc_A 51 KGKYVVLAFIPLAFTFVSPT-EIIAFSE-AAKKFEEQGAQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSL 128 (216)
T ss_dssp TTSEEEEEECSCTTSSHHHH-HHHHHHH-HHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHH
T ss_pred CCCeEEEEEEcCCCCCcCch-hhhHHHH-hHHhhccCCceEEEeecCchhhHHHHHHHHHHhCCccCcccceEeCCCCHH
Confidence 5899999999 999999986 4444442 22233333555555544320 10 01111
Q ss_pred HHHHHHhcCCC--CcCcEEEecCCCCccccccccCCCCCCCcchHHHHHHHHHH
Q 004888 192 MTYVQALYGGG--GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 243 (725)
Q Consensus 192 ~~~~q~~~g~~--G~P~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i~~ 243 (725)
.+....+.... ..+.++|+||+|++.+...|-.+.+ ..+-++|+.|..
T Consensus 129 ak~YGv~~~~~g~~~R~tFiID~~G~Ir~~~v~~~~~g----rn~dEiLr~l~A 178 (216)
T 3sbc_A 129 SRDYGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVG----RNVDEALRLVEA 178 (216)
T ss_dssp HHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBC----CCHHHHHHHHHH
T ss_pred HHHcCCeeccCCceeeEEEEECCCCeEEEEEEcCCCCC----CCHHHHHHHHHH
Confidence 11111111112 3478999999998876543322222 267777776653
No 321
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=91.57 E-value=0.31 Score=48.73 Aligned_cols=76 Identities=13% Similarity=0.109 Sum_probs=44.5
Q ss_pred hHHHHHHHhhc--CCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCc
Q 004888 127 GEEAFAEARKR--DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (725)
Q Consensus 127 ~~eAl~~Ak~e--~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~ 204 (725)
.++.++..+.. ....++.++++||++|++.. ++.+..+-.|..+.|+. .+... .+...+|..+.
T Consensus 155 ~~~il~~l~~~~i~~~~i~ly~~~~Cp~C~~a~-------~~L~~~~i~~~~~~i~~--~~~~~-----~l~~~~g~~~v 220 (241)
T 1nm3_A 155 ADTMLKYLAPQHQVQESISIFTKPGCPFCAKAK-------QLLHDKGLSFEEIILGH--DATIV-----SVRAVSGRTTV 220 (241)
T ss_dssp HHHHHHHHCTTSCCCCCEEEEECSSCHHHHHHH-------HHHHHHTCCCEEEETTT--TCCHH-----HHHHHTCCSSS
T ss_pred HHHHHHHhhhhccccceEEEEECCCChHHHHHH-------HHHHHcCCceEEEECCC--chHHH-----HHHHHhCCCCc
Confidence 36777766543 23335557889999999875 23333344566655554 34421 12233588899
Q ss_pred CcEEEecCCCCcccc
Q 004888 205 PLSVFLSPDLKPLMG 219 (725)
Q Consensus 205 P~~vfl~pdG~~i~~ 219 (725)
|..++ +|+.+.+
T Consensus 221 P~~~~---~g~~i~g 232 (241)
T 1nm3_A 221 PQVFI---GGKHIGG 232 (241)
T ss_dssp CEEEE---TTEEEES
T ss_pred CEEEE---CCEEEEC
Confidence 98764 5666543
No 322
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=91.43 E-value=0.54 Score=42.60 Aligned_cols=75 Identities=11% Similarity=0.023 Sum_probs=41.6
Q ss_pred HHHHHHhhcCCcEEEEEec----cCChhhHhhhhhccCCHHHHHHHhcCc-EEEEEcCCCCcchHHHHHHHHHHhcCCCC
Q 004888 129 EAFAEARKRDVPIFLSIGY----STCHWCHVMEVESFEDEGVAKLLNDWF-VSIKVDREERPDVDKVYMTYVQALYGGGG 203 (725)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~----~wC~~C~~Me~e~f~d~eVa~~ln~~F-V~VkvD~ee~pd~~~~y~~~~q~~~g~~G 203 (725)
+.++.+-++++ |+|+.-. +||++|+... ++.+.++-.+ +...+|+++.+++.+.+ ...+|...
T Consensus 7 ~~v~~~i~~~~-Vvvfsk~t~~~p~Cp~C~~ak-------~lL~~~gv~~~~~~~~dv~~~~~~~~~l----~~~sg~~t 74 (121)
T 3gx8_A 7 KAIEDAIESAP-VVLFMKGTPEFPKCGFSRATI-------GLLGNQGVDPAKFAAYNVLEDPELREGI----KEFSEWPT 74 (121)
T ss_dssp HHHHHHHHSCS-EEEEESBCSSSBCTTHHHHHH-------HHHHHHTBCGGGEEEEECTTCHHHHHHH----HHHHTCCS
T ss_pred HHHHHHhccCC-EEEEEeccCCCCCCccHHHHH-------HHHHHcCCCcceEEEEEecCCHHHHHHH----HHHhCCCC
Confidence 44555566665 4444443 5999999985 2333333231 13345666666554333 33457777
Q ss_pred cCcEEEecCCCCccc
Q 004888 204 WPLSVFLSPDLKPLM 218 (725)
Q Consensus 204 ~P~~vfl~pdG~~i~ 218 (725)
+|.++| +|+.|.
T Consensus 75 vP~vfI---~g~~iG 86 (121)
T 3gx8_A 75 IPQLYV---NKEFIG 86 (121)
T ss_dssp SCEEEE---TTEEEE
T ss_pred CCeEEE---CCEEEe
Confidence 888754 466553
No 323
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}
Probab=90.96 E-value=0.24 Score=47.17 Aligned_cols=19 Identities=11% Similarity=0.223 Sum_probs=15.6
Q ss_pred cCC-cEEEEEeccCChhhHh
Q 004888 137 RDV-PIFLSIGYSTCHWCHV 155 (725)
Q Consensus 137 e~K-pI~l~~g~~wC~~C~~ 155 (725)
.|| .|+++|.++||+.|..
T Consensus 42 ~gk~vvl~~~~a~wcp~C~~ 61 (171)
T 2pwj_A 42 KDKKVVIFGLPGAYTGVCSS 61 (171)
T ss_dssp TTSEEEEEECSCTTCTTHHH
T ss_pred CCCCEEEEEecCCCCCCCCH
Confidence 355 5677899999999987
No 324
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0
Probab=90.91 E-value=0.082 Score=51.34 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=30.5
Q ss_pred CCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCC
Q 004888 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE 182 (725)
Q Consensus 138 ~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~e 182 (725)
++|++|.|+..||+.|+.|+...-..+++.+.+..+...++++..
T Consensus 14 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 58 (189)
T 3l9v_A 14 DAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVS 58 (189)
T ss_dssp TCCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCTTCCEEEEECS
T ss_pred CCCEEEEEECCCChhHHHHhHhccchHHHHHhCCCCCEEEEEech
Confidence 479999999999999999986431235666655544444445443
No 325
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=90.74 E-value=13 Score=43.60 Aligned_cols=60 Identities=17% Similarity=0.065 Sum_probs=44.0
Q ss_pred CeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHcc---CChHHHHHHHHHHHHHHHhccCCCCceee
Q 004888 359 GGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLT---KDVFYSYICRDILDYLRRDMIGPGGEIFS 425 (725)
Q Consensus 359 GGF~RYs~D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t---~d~~y~~vA~~~~~fl~~~m~~~~Ggfys 425 (725)
||| .|+.... ..--..+.|..+.++..+.... +++.+.+.++++++||++ ++.++|||.+
T Consensus 440 GGW-~f~~~~~-----~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wLls-~Q~~DGgw~a 502 (732)
T 1w6k_A 440 GGF-SFSTLDC-----GWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLN-MRNPDGGFAT 502 (732)
T ss_dssp TCC-BSSCTTT-----CCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHT-TCCTTSCBCS
T ss_pred Cee-cCCCCCC-----CCCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHH-hcCCCCCEEe
Confidence 777 3554332 2224557899999999887764 456778899999999996 8899999953
No 326
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=90.63 E-value=0.5 Score=42.77 Aligned_cols=74 Identities=11% Similarity=0.169 Sum_probs=42.5
Q ss_pred HHHHHHHhhcCCcEEEEEec----cCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCcchHHHHHHHHHHhcCCC
Q 004888 128 EEAFAEARKRDVPIFLSIGY----STCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGG 202 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~----~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~ 202 (725)
.+.+++.-++++ |+|+.-. +||++|+... ++.+.++- .|..+.| ++.+++.+. +...+|..
T Consensus 10 ~~~v~~~i~~~~-Vvvfsk~t~~~p~Cp~C~~ak-------~lL~~~gv~~~~~vdV--~~d~~~~~~----l~~~tg~~ 75 (118)
T 2wem_A 10 AEQLDALVKKDK-VVVFLKGTPEQPQCGFSNAVV-------QILRLHGVRDYAAYNV--LDDPELRQG----IKDYSNWP 75 (118)
T ss_dssp HHHHHHHHHHSS-EEEEESBCSSSBSSHHHHHHH-------HHHHHTTCCCCEEEES--SSCHHHHHH----HHHHHTCC
T ss_pred HHHHHHHhccCC-EEEEEecCCCCCccHHHHHHH-------HHHHHcCCCCCEEEEc--CCCHHHHHH----HHHHhCCC
Confidence 455666666665 5554443 5999999875 23333333 3655544 455554433 33445778
Q ss_pred CcCcEEEecCCCCccc
Q 004888 203 GWPLSVFLSPDLKPLM 218 (725)
Q Consensus 203 G~P~~vfl~pdG~~i~ 218 (725)
.+|.++| +|+.|.
T Consensus 76 tvP~vfI---~g~~IG 88 (118)
T 2wem_A 76 TIPQVYL---NGEFVG 88 (118)
T ss_dssp SSCEEEE---TTEEEE
T ss_pred CcCeEEE---CCEEEe
Confidence 8898754 466553
No 327
>1wzz_A Probable endoglucanase; glycoside hydrolase family 8 (GH-8), (alpha/alpha)6 barrel, structural genomics; 1.65A {Gluconacetobacter xylinus} SCOP: a.102.1.2
Probab=89.06 E-value=5.2 Score=42.60 Aligned_cols=179 Identities=12% Similarity=0.024 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCcchhhhcHHH-HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHH
Q 004888 512 EKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGL-VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAAS 590 (725)
Q Consensus 512 e~~~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal-~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~ 590 (725)
+++.+..+..+++.+....+-+.+.-.+..++.-.|+ |+.|+.. +|. ..=.++..
T Consensus 17 ~~~~~~w~~~k~~~l~~~GrviD~~n~~~t~SEGqgYGMl~Av~~-----~d~-------------------~~FD~l~~ 72 (334)
T 1wzz_A 17 DAVAQQWAIFRAKYLRPSGRVVDTGNGGESHSEGQGYGMLFAASA-----GDL-------------------ASFQSMWM 72 (334)
T ss_dssp THHHHHHHHHHHHHBCTTSCBCCSSSSCEEEHHHHHHHHHHHHHH-----TCH-------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCceEEecCCCCEEecHHHHHHHHHHHHh-----CCH-------------------HHHHHHHH
Confidence 5566667777877775533222222222224445544 2223222 231 22246778
Q ss_pred HHHHhccccCCCeEEEEecC-CCC---CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccc
Q 004888 591 FIRRHLYDEQTHRLQHSFRN-GPS---KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFN 666 (725)
Q Consensus 591 ~l~~~l~d~~~G~l~~s~~~-g~~---~~~~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~ 666 (725)
|.++++...++|.+-+.+.. +.. ....=.++=-+.+.||+.+.+..|++.|++.|.+|++.+.++-+....|....
T Consensus 73 wt~~~l~~~~~~L~aW~~~~~~~~~v~d~n~AtDgDl~IA~ALl~A~~~Wg~~~Y~~~A~~il~~i~~~~v~~~~g~~~l 152 (334)
T 1wzz_A 73 WARTNLQHTNDKLFSWRFLKGHQPPVPDKNNATDGDLLIALALGRAGKRFQRPDYIQDAMAIYGDVLNLMTMKAGPYVVL 152 (334)
T ss_dssp HHHHHTBCSSSSCBCSEEETTSSSSSCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHEEEETTEEEE
T ss_pred HHHHHhccCCCCceEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcccCCCCeEEE
Confidence 88888865456655555432 221 22233555578999999999999999999999999999888766543332221
Q ss_pred cCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 004888 667 TTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLYLR 723 (725)
Q Consensus 667 t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~t~~~~~~~y~~~A~~~l~~~ 723 (725)
.++...- .+...+...||= .+-..+-.++..+++ ..|.+.++..++.+
T Consensus 153 lPg~~gf----~~~~~~~~npSY--~~p~~~~~fa~~~~~---~~W~~~~~~~~~ll 200 (334)
T 1wzz_A 153 MPGAVGF----TKKDSVILNLSY--YVMPSLLQAFDLTAD---PRWRQVMEDGIRLV 200 (334)
T ss_dssp CSCSSSC----BCSSEEEECGGG--CCHHHHHHHHHHHCC---THHHHHHHHHHHHH
T ss_pred CCCcccc----cCCCCCeechhh--cCHHHHHHHHHccCC---chHHHHHHHHHHHH
Confidence 1211100 000001111322 223555667777775 57888888877655
No 328
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=88.98 E-value=0.57 Score=47.20 Aligned_cols=44 Identities=14% Similarity=0.107 Sum_probs=28.3
Q ss_pred cCCcEEEEEe-ccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCC
Q 004888 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE 182 (725)
Q Consensus 137 e~KpI~l~~g-~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~e 182 (725)
.||+|+|+|+ .+||+.|..- -..|++- ..++-+.+.+.|=|..+
T Consensus 55 ~GK~vVL~FyP~d~TpvCt~E-~~~f~~~-~~eF~~~g~~vigiS~D 99 (219)
T 3tue_A 55 KGKWVVLFFYPLDFTFVCPTE-VIAFSDS-VSRFNELNCEVLACSID 99 (219)
T ss_dssp TTSEEEEEECSCTTCSSCCHH-HHHHHTT-HHHHHTTTEEEEEEESS
T ss_pred CCCEEEEEEecccCCCCCchh-HhhHHHH-HhhhccCCcEEEEeeCC
Confidence 5899999999 9999999874 3445432 22333345555555443
No 329
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A
Probab=88.58 E-value=5.1 Score=43.15 Aligned_cols=69 Identities=12% Similarity=0.005 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHH
Q 004888 549 VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISG 628 (725)
Q Consensus 549 ~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~leDyA~li~a 628 (725)
++.++..++++++| ++|++.|+++++.+.+.- + .....++-.+.|=.+..
T Consensus 284 i~~~l~~~~~~~~d----------------~~~~~~a~~~~~~~~~~~-----~---------~~~~~~LCHG~aG~~~~ 333 (409)
T 2g0d_A 284 ISLLYLYGGLALDN----------------DYFVDKAEKILESAMQRK-----L---------GIDSYMICHGYSGLIEI 333 (409)
T ss_dssp HHHHHHHHHHHTTC----------------HHHHHHHHHHHHHHHHHC-----T---------TCCSCCTTTSHHHHHHH
T ss_pred HHHHHHHHHHHcCC----------------HHHHHHHHHHHHHHHHhc-----c---------CCCCCCCCChHHHHHHH
Confidence 45677889999988 789999999999988651 0 01123555567777889
Q ss_pred HHHHHHHcCCHHHHHHHHH
Q 004888 629 LLDLYEFGSGTKWLVWAIE 647 (725)
Q Consensus 629 LL~LYe~Tgd~~yL~~A~~ 647 (725)
|+.+|+.|++++|++.|.+
T Consensus 334 l~~l~~~~~~~~~~~~a~~ 352 (409)
T 2g0d_A 334 CSLFKRLLNTKKFDSYMEE 352 (409)
T ss_dssp HHHHHHHHCCCTTHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHH
Confidence 9999999999999999887
No 330
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.40 E-value=0.74 Score=40.83 Aligned_cols=65 Identities=11% Similarity=-0.029 Sum_probs=34.8
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcC-cEEEEEcCCCCcchHHHHHHHHHHhc--------CCCCcCcEEEecC
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALY--------GGGGWPLSVFLSP 212 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~-FV~VkvD~ee~pd~~~~y~~~~q~~~--------g~~G~P~~vfl~p 212 (725)
++.|+.++|++|+..++. .++.++|+++ .-...+|+++.|+..+.+ +... |...+|.++ +
T Consensus 10 V~vy~~~~C~~C~~~~~~----~~ak~~L~~~gi~y~~vdI~~~~~~~~~l----~~~~~~~~~~~~g~~tvP~vf-i-- 78 (111)
T 2ct6_A 10 IRVFIASSSGFVAIKKKQ----QDVVRFLEANKIEFEEVDITMSEEQRQWM----YKNVPPEKKPTQGNPLPPQIF-N-- 78 (111)
T ss_dssp EEEEECSSCSCHHHHHHH----HHHHHHHHHTTCCEEEEETTTCHHHHHHH----HHSCCTTTCCSSSSCCSCEEE-E--
T ss_pred EEEEEcCCCCCcccchhH----HHHHHHHHHcCCCEEEEECCCCHHHHHHH----HHHhcccccccCCCCCCCEEE-E--
Confidence 445688999999952211 1334455543 333456776666554433 2232 555677654 4
Q ss_pred CCCcc
Q 004888 213 DLKPL 217 (725)
Q Consensus 213 dG~~i 217 (725)
+|+.+
T Consensus 79 ~g~~i 83 (111)
T 2ct6_A 79 GDRYC 83 (111)
T ss_dssp TTEEE
T ss_pred CCEEE
Confidence 35544
No 331
>1g87_A Endocellulase 9G; endoglucanase, cellulose binding domain, (ALPH 6-helix barrel, beta barrel, hydrolase; 1.60A {Clostridium cellulolyticum} SCOP: a.102.1.2 b.2.2.2 PDB: 1ga2_A* 1k72_A* 1kfg_A*
Probab=88.39 E-value=19 Score=41.42 Aligned_cols=147 Identities=14% Similarity=0.125 Sum_probs=89.9
Q ss_pred cCCCC---CCCCCCCChhHH--HHHH-Hhhh---hccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCeEEEEecC--
Q 004888 299 RFGGF---GSAPKFPRPVEI--QMML-YHSK---KLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVD-- 367 (725)
Q Consensus 299 ~~GGf---g~apKFP~~~~l--~~ll-~~~~---~~~~~~~~~~~~~~~~~~~~TL~~ma~gGi~D~v~GGF~RYs~D-- 367 (725)
.-||| |.--||-.|... ..|+ -+.. ..... ..-+.+++.+..-++=|.+- +...|+||.-.-|
T Consensus 49 lsGGwyDAGD~~Kf~~p~a~t~~~L~w~~~e~~~~~~~~---g~~~d~ldeikwg~Dyllk~---~~~~~~~y~qVGdg~ 122 (614)
T 1g87_A 49 LTGGWYDAGDHVKFNLPMSYTSAMLAWSLYEDKDAYDKS---GQTKYIMDGIKWANDYFIKC---NPTPGVYYYQVGDGG 122 (614)
T ss_dssp CCCSBCCSSSCCEEHHHHHHHHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHT---CCSTTCEEEEESCHH
T ss_pred CCCCeeeCCCCcEeccccHHHHHHHHHHHHHhHHHHhhC---CChHHHHHHHHHHHHHHHHh---ccCCCcEEEEecCCC
Confidence 46888 555788776432 1222 1111 01111 12468888888888888773 3346777753334
Q ss_pred ---CCCCCCCCchhH--------------HH-HHHHHHHHHHHHHccCC------hHHHHHHHHHHHHHHHhcc----CC
Q 004888 368 ---ERWHVPHFEKML--------------YD-QGQLANVYLDAFSLTKD------VFYSYICRDILDYLRRDMI----GP 419 (725)
Q Consensus 368 ---~~W~vPHFEKML--------------yD-NA~Ll~~ya~Ay~~t~d------~~y~~vA~~~~~fl~~~m~----~~ 419 (725)
..|..| |.|- -| -+..+.+++.|++++++ ..+++.|+++.+|..++-- ..
T Consensus 123 ~DH~~w~~p--e~~~~~r~~y~v~~~~pgsd~a~e~AAAlAaAS~vfk~~D~~yA~~~L~~Ak~l~~fA~~~~~~~~~~~ 200 (614)
T 1g87_A 123 KDHSWWGPA--EVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCISHAKNLFDMADKAKSDAGYTA 200 (614)
T ss_dssp HHHTCCSCG--GGCCSCCCEEEECSSSCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHCCCTTCCT
T ss_pred cCccccCCc--ccCCCCCcceEecCCCCccHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHcCCCCCCCc
Confidence 367765 3321 24 68899999999999975 4567889999999988531 11
Q ss_pred CCceeeeccCCCccccccccccCcceEEechHHHHHHhhhh--HHHHHH
Q 004888 420 GGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH--AILFKE 466 (725)
Q Consensus 420 ~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~lg~~--~~l~~~ 466 (725)
.+|||.+.+ .. .- ++|...|+..++|+. .+.+..
T Consensus 201 ~~~~Y~ss~-~~-----------DE-l~WAAawLy~ATgd~~Yl~~a~~ 236 (614)
T 1g87_A 201 ASGYYSSSS-FY-----------DD-LSWAAVWLYLATNDSTYLDKAES 236 (614)
T ss_dssp TTTTSCCSC-SH-----------HH-HHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CcCCcCCCC-ch-----------hH-HHHHHHHHHHHhCCHHHHHHHHH
Confidence 256776411 11 11 279999999999965 344444
No 332
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0
Probab=87.44 E-value=0.41 Score=46.26 Aligned_cols=40 Identities=13% Similarity=0.026 Sum_probs=28.8
Q ss_pred CCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCC
Q 004888 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE 182 (725)
Q Consensus 138 ~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~e 182 (725)
+||++|.|+..||++|+.++. ++ +++.+.+ +.+.+++.+.
T Consensus 22 ~~~~vvef~d~~Cp~C~~~~~-~~--~~~~~~~--~v~~~~~p~~ 61 (185)
T 3feu_A 22 GMAPVTEVFALSCGHCRNMEN-FL--PVISQEA--GTDIGKMHIT 61 (185)
T ss_dssp CCCSEEEEECTTCHHHHHHGG-GH--HHHHHHH--TSCCEEEECC
T ss_pred CCCEEEEEECCCChhHHHhhH-HH--HHHHHHh--CCeEEEEecc
Confidence 689999999999999999984 33 4555544 3444555554
No 333
>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A
Probab=87.16 E-value=2.1 Score=42.29 Aligned_cols=93 Identities=14% Similarity=0.034 Sum_probs=56.6
Q ss_pred ChhhhcccCCCCccccchHHHHHHHhhcCCcEE-EEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCC--Ccc
Q 004888 110 SPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIF-LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE--RPD 186 (725)
Q Consensus 110 spyl~~ha~~~V~W~~~~~eAl~~Ak~e~KpI~-l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee--~pd 186 (725)
.-|++.+....|.=. ..+.+.+--..+.|+. |.|...||.-|..+.. .| .+|++.....+..+.+|.++ .+.
T Consensus 104 ~~fi~~~~~plv~e~--t~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~-~~--~~vAk~~k~~i~F~~vd~~~~~~~~ 178 (227)
T 4f9z_D 104 SRFIEINSLHMVTEY--NPVTVIGLFNSVIQIHLLLIMNKASPEYEENMH-RY--QKAAKLFQGKILFILVDSGMKENGK 178 (227)
T ss_dssp HHHHHHHCCCSEEEC--CHHHHHHHHHSSCCEEEEEEECTTSTTHHHHHH-HH--HHHHHHTTTTCEEEEEETTSGGGHH
T ss_pred HHHHHHhCCCceeec--CcccHHHHhccCCceEEEEEEcCCcchHHHHHH-HH--HHHHHHhhCCEEEEEeCCccHhHHH
Confidence 345555544444322 2444444455666654 5566779999987653 44 35777777678888999864 222
Q ss_pred hHHHHHHHHHHhcCCC--CcCcEEEecCCCC
Q 004888 187 VDKVYMTYVQALYGGG--GWPLSVFLSPDLK 215 (725)
Q Consensus 187 ~~~~y~~~~q~~~g~~--G~P~~vfl~pdG~ 215 (725)
+.+. +|.. ++|+.++++..+.
T Consensus 179 ~l~~--------fgl~~~~~P~~~i~~~~~~ 201 (227)
T 4f9z_D 179 VISF--------FKLKESQLPALAIYQTLDD 201 (227)
T ss_dssp HHHH--------TTCCGGGCSEEEEEESSSC
T ss_pred HHHH--------cCCCcccCCEEEEEECCCC
Confidence 2221 2655 8999999997543
No 334
>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase, family 9, cellobiohydrolase; 2.1A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A*
Probab=86.39 E-value=1.7 Score=50.08 Aligned_cols=85 Identities=14% Similarity=0.116 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecC--CC--C--CCCCCcc
Q 004888 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN--GP--S--KAPGFLD 620 (725)
Q Consensus 547 al~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~--g~--~--~~~~~le 620 (725)
+-+..+||.|++++++.+. .| -.++|+.|+++.+|..++- |.+.....+ +. . ...++.
T Consensus 291 ~~~AAalAaas~vfk~~d~--~y--------a~~~L~~A~~~~~fa~~~~-----~~y~~~~~~~~~~~~~~Y~ss~~~- 354 (609)
T 1ut9_A 291 LNFAATLAQSARLWKDYDP--TF--------AADCLEKAEIAWQAALKHP-----DIYAEYTPGSGGPGGGPYNDDYVG- 354 (609)
T ss_dssp HHHHHHHHHHHHHHTTTCH--HH--------HHHHHHHHHHHHHHHHHCT-----TCCBCCCCSSSSCBSCCCCBSCCH-
T ss_pred HHHHHHHHHHHHhcccCCH--HH--------HHHHHHHHHHHHHHHHhCc-----ccccccccccCccCCCCCCCCCcc-
Confidence 4557789999999976221 11 2578999999999998753 111000000 00 0 112233
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004888 621 DYAFLISGLLDLYEFGSGTKWLVWAIELQ 649 (725)
Q Consensus 621 DyA~li~aLL~LYe~Tgd~~yL~~A~~L~ 649 (725)
-.+++|.+.||.+|||..||+.|++..
T Consensus 355 --DEl~WAAawLy~ATgd~~Yl~~a~~~~ 381 (609)
T 1ut9_A 355 --DEFYWAACELYVTTGKDEYKNYLMNSP 381 (609)
T ss_dssp --HHHHHHHHHHHHHHCCHHHHHHHHTST
T ss_pred --cHHHHHHHHHHHHhCCHHHHHHHHHhh
Confidence 355888999999999999999998753
No 335
>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*
Probab=86.25 E-value=3.6 Score=41.15 Aligned_cols=28 Identities=14% Similarity=0.366 Sum_probs=21.1
Q ss_pred CCcEEEEEeccCChhhHhhhhhccCCHHHH
Q 004888 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVA 167 (725)
Q Consensus 138 ~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa 167 (725)
.|..++.|.--.|++|+.++.+++ +++.
T Consensus 39 A~vtIvef~Dy~CP~C~~~~~~~~--~~l~ 66 (226)
T 3f4s_A 39 APILMIEYASLTCYHCSLFHRNVF--PKIK 66 (226)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHTH--HHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHH--HHHH
Confidence 455688899999999999986554 3554
No 336
>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase, family 9, cellobiohydrolase; 2.1A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A*
Probab=85.51 E-value=11 Score=43.28 Aligned_cols=120 Identities=15% Similarity=0.171 Sum_probs=71.2
Q ss_pred cHHHHHHHHHHHHHHHhCCCccc------CCCeEEEEecCCCCC----CCCCch--------hHHHHHHHHHHHHHHHHc
Q 004888 334 ASEGQKMVLFTLQCMAKGGIHDH------VGGGFHRYSVDERWH----VPHFEK--------MLYDQGQLANVYLDAFSL 395 (725)
Q Consensus 334 ~~~~~~~~~~TL~~ma~gGi~D~------v~GGF~RYs~D~~W~----vPHFEK--------MLyDNA~Ll~~ya~Ay~~ 395 (725)
-+++++.+..-++=|.+ .++. +.|+.+--.+|..|. .|.-.. .----+.++.+++.|+++
T Consensus 226 ~~d~ldeikwg~D~llk--~q~~~g~~~~~~g~v~~~~~D~~w~g~~~~Pe~~~~~R~~~~p~t~~~~~~AAalAaas~v 303 (609)
T 1ut9_A 226 YPDILDEARWEIEFFKK--MQVTEKEDPSIAGMVHHKIHDFRWTALGMLPHEDPQPRYLRPVSTAATLNFAATLAQSARL 303 (609)
T ss_dssp SCHHHHHHHHHHHHHHH--HBCCTTTCGGGTTCEECEEEESSCCCSSCCGGGCCSBEEECCEEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--hccCCCCcceEEEEecCCCCCcccCCCCCChhhCCCceeecCCCcHHHHHHHHHHHHHHHh
Confidence 35777777776666655 2332 224455445666774 343221 122245678889999999
Q ss_pred cCC------hHHHHHHHHHHHHHHHhcc--C--------CCCceeeeccCCCccccccccccCcceEEechHHHHHHhhh
Q 004888 396 TKD------VFYSYICRDILDYLRRDMI--G--------PGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGE 459 (725)
Q Consensus 396 t~d------~~y~~vA~~~~~fl~~~m~--~--------~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~lg~ 459 (725)
+++ ..+++.|++.++|..++-- . ..+|||.+.+ ++-- ++|...|++.++|+
T Consensus 304 fk~~d~~ya~~~L~~A~~~~~fa~~~~~~y~~~~~~~~~~~~~~Y~ss~------------~~DE-l~WAAawLy~ATgd 370 (609)
T 1ut9_A 304 WKDYDPTFAADCLEKAEIAWQAALKHPDIYAEYTPGSGGPGGGPYNDDY------------VGDE-FYWAACELYVTTGK 370 (609)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHHCTTCCBCCCCSSSSCBSCCCCBSC------------CHHH-HHHHHHHHHHHHCC
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhCcccccccccccCccCCCCCCCCC------------cccH-HHHHHHHHHHHhCC
Confidence 865 4567889999999987421 0 0134554311 0011 37999999999996
Q ss_pred h--HHHHHHHh
Q 004888 460 H--AILFKEHY 468 (725)
Q Consensus 460 ~--~~l~~~~y 468 (725)
. .+.+...+
T Consensus 371 ~~Yl~~a~~~~ 381 (609)
T 1ut9_A 371 DEYKNYLMNSP 381 (609)
T ss_dssp HHHHHHHHTST
T ss_pred HHHHHHHHHhh
Confidence 5 34455443
No 337
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=81.54 E-value=3.4 Score=34.93 Aligned_cols=65 Identities=14% Similarity=0.042 Sum_probs=32.8
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcC-cEEEEEcCCCCcchHHHHHHHHHHhcC--CCCcCcEEEecCCCCcc
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYG--GGGWPLSVFLSPDLKPL 217 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~-FV~VkvD~ee~pd~~~~y~~~~q~~~g--~~G~P~~vfl~pdG~~i 217 (725)
++-|+.+||++|+..++. ..+.++|+++ .-...+|++..|+..+ .++..+| ...+|..+ + +|+.+
T Consensus 4 v~ly~~~~C~~c~~~~~~----~~ak~~L~~~~i~~~~~di~~~~~~~~----~l~~~~g~~~~~vP~if-i--~g~~i 71 (93)
T 1t1v_A 4 LRVYSTSVTGSREIKSQQ----SEVTRILDGKRIQYQLVDISQDNALRD----EMRTLAGNPKATPPQIV-N--GNHYC 71 (93)
T ss_dssp EEEEECSSCSCHHHHHHH----HHHHHHHHHTTCCCEEEETTSCHHHHH----HHHHHTTCTTCCSCEEE-E--TTEEE
T ss_pred EEEEEcCCCCCchhhHHH----HHHHHHHHHCCCceEEEECCCCHHHHH----HHHHHhCCCCCCCCEEE-E--CCEEE
Confidence 344688999999532211 1223344432 2223455555554433 2233346 55788765 3 45544
No 338
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase; 1.90A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2
Probab=81.49 E-value=42 Score=38.75 Aligned_cols=159 Identities=10% Similarity=0.036 Sum_probs=88.8
Q ss_pred cHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCC-CeEEEEecCCCCCCCCCcc---
Q 004888 545 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQT-HRLQHSFRNGPSKAPGFLD--- 620 (725)
Q Consensus 545 WNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~-G~l~~s~~~g~~~~~~~le--- 620 (725)
-.++.++.|+.++...++.-....+|.|--+-..++.++.++=.++|+++.. +++. |.++|...++.-.....++
T Consensus 198 p~a~t~~~L~w~~~~~~~~~~~~~~~ipes~~~~~d~ldeikwg~Dyllk~q-~~~~~g~~y~~vgd~~~~~~~~Pe~~~ 276 (639)
T 1clc_A 198 NAGITVGSMFLAWEHFKDQLEPVALEIPEKNNSIPDFLDELKYEIDWILTMQ-YPDGSGRVAHKVSTRNFGGFIMPENEH 276 (639)
T ss_dssp HHHHHHHHHHHHHHHSHHHHTTCCCSSGGGGSSSCHHHHHHHHHHHHHHTTB-CTTSSCCBEEEEECSSCCCSCCGGGCC
T ss_pred cHHHHHHHHHHHHHHhhhhhhccccCCccCCCcHHHHHHHHHHHHHHHHHhc-cccCCCeEEEEecCCCCCCCCCchhcC
Confidence 3577788888888876652100001111001112789999999999998754 5555 8888875432111001111
Q ss_pred -----------hHHHHHHHHHHHHHHcC--CH----HHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCC
Q 004888 621 -----------DYAFLISGLLDLYEFGS--GT----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHD 683 (725)
Q Consensus 621 -----------DyA~li~aLL~LYe~Tg--d~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D 683 (725)
--+.++.+|...+.+.. |+ ++|+.|+++++++.++ .|.+|..+.... -
T Consensus 277 ~~R~~~~~~s~~a~e~AAAlAaAS~vfk~~D~~yA~~~L~~Ak~l~~fA~~~-----~~~~y~~~~~~~----------~ 341 (639)
T 1clc_A 277 DERFFVPWSSAATADFVAMTAMAARIFRPYDPQYAEKCINAAKVSYEFLKNN-----PANVFANQSGFS----------T 341 (639)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHC-----CSCCCCCCTTCC----------S
T ss_pred CCceEecCCcHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHc-----CCCccCCCcccc----------c
Confidence 12455556666666654 44 5688888888887663 233332211000 0
Q ss_pred CCCCC--hHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 004888 684 GAEPS--GNSVSVINLVRLASIVAGSKSDYYRQNAEHSLYL 722 (725)
Q Consensus 684 ~a~PS--~Nsv~a~~LlrL~~~t~~~~~~~y~~~A~~~l~~ 722 (725)
+...| -.--.+-+-..|+..||+ ..|++.|++....
T Consensus 342 g~Y~ss~~~DEl~WAAawLy~ATgd---~~Yl~~a~~~~~~ 379 (639)
T 1clc_A 342 GEYATVSDADDRLWAAAEMWETLGD---EEYLRDFENRAAQ 379 (639)
T ss_dssp CCCCCSCSHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHT
T ss_pred cccCCCCcchHHHHHHHHHHHHhCC---HHHHHHHHHHHHh
Confidence 01111 112345666788999997 7899999886543
No 339
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=81.30 E-value=2.7 Score=38.12 Aligned_cols=55 Identities=13% Similarity=0.254 Sum_probs=30.3
Q ss_pred HHHHHHHhhcCCcEEEEEec---cCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCcchHHHH
Q 004888 128 EEAFAEARKRDVPIFLSIGY---STCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVY 191 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~---~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~pd~~~~y 191 (725)
.|.++..-++|+-|+..=+. +.|++|++..+ +-..++- .|.. +|+.+.|++.+..
T Consensus 10 ~e~i~~~i~~~~VvvF~Kgt~~~P~C~fc~~ak~-------lL~~~gv~~~~~--~~v~~~~~~r~~l 68 (118)
T 2wul_A 10 AEQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQ-------ILRLHGVRDYAA--YNVLDDPELRQGI 68 (118)
T ss_dssp HHHHHHHHHHSSEEEEESBCSSSBSSHHHHHHHH-------HHHHTTCCSCEE--EETTSCHHHHHHH
T ss_pred HHHHHHHHhcCCEEEEEcCCCCCCCCHHHHHHHH-------HHHHhCCcCeEe--ecccCCHHHHHHH
Confidence 45666666666644433343 57999998752 2222221 3544 4666667665433
No 340
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=80.86 E-value=2.9 Score=47.50 Aligned_cols=74 Identities=11% Similarity=0.120 Sum_probs=44.7
Q ss_pred HHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCC-cchHHHHHHHHHHhcCCCCcCcE
Q 004888 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER-PDVDKVYMTYVQALYGGGGWPLS 207 (725)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~-pd~~~~y~~~~q~~~g~~G~P~~ 207 (725)
+.+++..++++ ++-|+.+||++|+.+. ++.+.++-.|..|.||.++. ++ +.+.++..+|...+|.+
T Consensus 9 ~~v~~~i~~~~--v~vy~~~~Cp~C~~~k-------~~L~~~~i~~~~~dv~~~~~~~~----~~~~l~~~~g~~tvP~v 75 (598)
T 2x8g_A 9 QWLRKTVDSAA--VILFSKTTCPYCKKVK-------DVLAEAKIKHATIELDQLSNGSA----IQKCLASFSKIETVPQM 75 (598)
T ss_dssp HHHHHHHHHCS--EEEEECTTCHHHHHHH-------HHHHHTTCCCEEEEGGGSTTHHH----HHHHTHHHHSCCCSCEE
T ss_pred HHHHHHhccCC--EEEEECCCChhHHHHH-------HHHHHCCCCcEEEEcccCcchHH----HHHHHHHHhCCceeCEE
Confidence 55666665555 5557889999999875 33334444577666665432 33 33333444588889987
Q ss_pred EEecCCCCccc
Q 004888 208 VFLSPDLKPLM 218 (725)
Q Consensus 208 vfl~pdG~~i~ 218 (725)
+ + +|+.+.
T Consensus 76 ~-i--~g~~ig 83 (598)
T 2x8g_A 76 F-V--RGKFIG 83 (598)
T ss_dssp E-E--TTEEEE
T ss_pred E-E--CCEEEE
Confidence 4 3 455553
No 341
>2z07_A Putative uncharacterized protein TTHA0978; uncharacterized conserved protein, structural genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=78.23 E-value=10 Score=40.90 Aligned_cols=50 Identities=10% Similarity=-0.032 Sum_probs=37.2
Q ss_pred hhcHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE
Q 004888 543 VSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS 607 (725)
Q Consensus 543 tsWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s 607 (725)
++|-..+...+++.++++|++ ..+|.+.|.++.+.+.+ +||++.|.++..
T Consensus 238 na~~~~~~~~la~la~~lg~~--------------a~~~~~~a~~~~~ai~~-~Wd~~~g~~~d~ 287 (420)
T 2z07_A 238 NAILQRANRDLYALAVLLQED--------------PYEIEEWIVRGEVGLEA-LWDREAGFYFSW 287 (420)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC--------------CHHHHHHHHHHHHHHHH-TEETTTTEECCE
T ss_pred HHHHHHHHHHHHHHHHHhCcc--------------HHHHHHHHHHHHHHHHH-hhCcccCeeEee
Confidence 334444455677788888863 27899999999999999 999887766543
No 342
>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}
Probab=77.22 E-value=4.2 Score=39.39 Aligned_cols=19 Identities=5% Similarity=0.104 Sum_probs=14.8
Q ss_pred cCCcE-EEEEeccCChhhHh
Q 004888 137 RDVPI-FLSIGYSTCHWCHV 155 (725)
Q Consensus 137 e~KpI-~l~~g~~wC~~C~~ 155 (725)
.||+| +++|.++||+.|..
T Consensus 46 ~Gk~vVL~fyP~~~tp~Ct~ 65 (176)
T 4f82_A 46 AGKRVVIFGLPGAFTPTCSA 65 (176)
T ss_dssp TTCEEEEEEESCTTCHHHHH
T ss_pred CCCeEEEEEEcCCCCCCCCH
Confidence 36765 55678999999987
No 343
>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}
Probab=76.72 E-value=1.8 Score=44.94 Aligned_cols=31 Identities=13% Similarity=0.254 Sum_probs=25.9
Q ss_pred hcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc
Q 004888 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND 172 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~ 172 (725)
..+|.+++.|+-..|++||+++ +++.+.+++
T Consensus 145 ~~gk~~I~vFtDp~CPYCkkl~------~~l~~~l~~ 175 (273)
T 3tdg_A 145 ANKDKILYIVSDPMCPHCQKEL------TKLRDHLKE 175 (273)
T ss_dssp GGTTCEEEEEECTTCHHHHHHH------HTHHHHHHH
T ss_pred CCCCeEEEEEECcCChhHHHHH------HHHHHHhhC
Confidence 5688999999999999999998 466666653
No 344
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=75.79 E-value=97 Score=33.82 Aligned_cols=100 Identities=12% Similarity=0.035 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHH-h--hhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC--CCCCCcch
Q 004888 547 GLVISSFARASKI-L--KSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDD 621 (725)
Q Consensus 547 al~I~aLa~A~~v-l--~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~--~~~~~leD 621 (725)
+.+|.+|++++.. . ++ ++|.+++.+..+||+..-+. +|+.-..+.+... ..-.|-||
T Consensus 152 a~vl~aL~rv~~~~t~~~~----------------~~y~~Ai~Rgl~wlL~mQ~~--nGGWpqFdpdn~~y~~~IpFnDD 213 (408)
T 1r76_A 152 VTEIRFLAQVVSQLAPEEA----------------APYRDAALKGIEYLLASQFP--NGGWPQVWPLEGGYHDAITYNDD 213 (408)
T ss_dssp HHHHHHHHHHHHHSCGGGC----------------HHHHHHHHHHHHHHHHHSCT--TSCCBSBSSCCCGGGGSEECGGG
T ss_pred HHHHHHHHHHHhhcccccc----------------HHHHHHHHHHHHHHHHccCC--CCCCcCcCccccccccCCCcCcH
Confidence 8889999999987 5 43 78999999999999987765 4554332222110 11133334
Q ss_pred H-HHHHHHHHHHHHHcC-----CH----HHHHHHHHHHHHHHHHccccCCCccc
Q 004888 622 Y-AFLISGLLDLYEFGS-----GT----KWLVWAIELQNTQDELFLDREGGGYF 665 (725)
Q Consensus 622 y-A~li~aLL~LYe~Tg-----d~----~yL~~A~~L~~~~~~~F~D~~~Ggyf 665 (725)
- +.+++.|..+++..+ ++ +....+++-.+++...-. +.+|.+|
T Consensus 214 vt~rvle~L~~~~~~~~~~~~~~~~~~~~~~~av~Rgi~~Ll~~Qe-~~dGsw~ 266 (408)
T 1r76_A 214 ALVHVAELLSDIAAGRDGFGFVPPAIRTRALEATNAAIHCIVETQV-VQDGKRL 266 (408)
T ss_dssp HHHHHHHHHHHHHHTCTTCTTSCHHHHHHHHHHHHHHHHHHHHHSC-EETTEEC
T ss_pred HHHHHHHHHHHHHhccCcccccchhhhhhHHHHHHHHHHHHHHhhc-ccCCccc
Confidence 3 566666767766323 23 444444444455444432 2246555
No 345
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=74.97 E-value=2.2 Score=45.47 Aligned_cols=43 Identities=9% Similarity=0.044 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCcee
Q 004888 381 DQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 424 (725)
Q Consensus 381 DNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~Ggfy 424 (725)
|-|..+.++++++..++++.|++.++++++||+. |+.++||+-
T Consensus 75 dTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~-mQ~~nGGWp 117 (332)
T 1gxm_A 75 ATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVN-SQYSTGALP 117 (332)
T ss_dssp TTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HCCTTSCCB
T ss_pred cHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh-ccCCCCCcc
Confidence 3678888899999999999999999999999997 999999983
No 346
>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP}
Probab=74.64 E-value=18 Score=43.82 Aligned_cols=113 Identities=17% Similarity=0.171 Sum_probs=73.0
Q ss_pred hhhhcHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEE---EecCCC----C
Q 004888 541 VIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQH---SFRNGP----S 613 (725)
Q Consensus 541 iitsWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~---s~~~g~----~ 613 (725)
.+..|..+.+.++.+.++.+||... .++.....++.++|+.++. ++ +|.+.. .+.+-. +
T Consensus 625 ~~~~~~~~~i~~~~~yy~~tGD~~~------------L~e~yp~lk~~l~~~~~~~-d~-~GLl~~~~~~~~DW~d~~~~ 690 (956)
T 2okx_A 625 VIPNWTFFWILACREYAAHTGNEAF------------AARIWPAVKHTLTHYLEHI-DD-SGLLNMAGWNLLDWAPIDQP 690 (956)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCHHH------------HHHHHHHHHHHHHHHHTTB-CT-TSSBCCSSCCCCCSSSCCCC
T ss_pred CCcChHHHHHHHHHHHHHHhCCHHH------------HHHHHHHHHHHHHHHHhcC-CC-CCCEEeCCCCccCccCCCCC
Confidence 3456888889999999999998321 1456667788888887654 54 443321 111100 0
Q ss_pred CCCCCcchHHHH---HHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHccccCCCccccc
Q 004888 614 KAPGFLDDYAFL---ISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNT 667 (725)
Q Consensus 614 ~~~~~leDyA~l---i~aLL~LYe~Tgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t 667 (725)
.........+++ +..+.++.++.|++ +|.+.|.+|.+.+.++|||++.|.|.+.
T Consensus 691 ~~G~~~~~~a~~~~al~~~a~lA~~LG~~~~a~~y~~~A~~lk~ai~~~~wd~~~g~y~d~ 751 (956)
T 2okx_A 691 NEGIVTHQNLFLVKALRDSRALAAAAGATEEADAFAARADLLAETINAVLWDEEKRAYIDC 751 (956)
T ss_dssp SSSEEHHHHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHHHHSEETTTTEECSE
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEee
Confidence 011123344544 44456667777764 5899999999999999999887766553
No 347
>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A
Probab=73.42 E-value=1.9 Score=41.81 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=30.4
Q ss_pred CCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc--CcEEEEEcC
Q 004888 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDR 181 (725)
Q Consensus 138 ~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~--~FV~VkvD~ 181 (725)
+||.++.|+.-||++|+.++...-.-+++.+.+.+ .|+.+.++.
T Consensus 21 ~~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~~v~~~~~~~~~ 66 (191)
T 3l9s_A 21 GEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPEGTKMTKYHVEF 66 (191)
T ss_dssp SSSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCTTCCEEEEECSS
T ss_pred CCCeEEEEECCCChhHHHhChhccchHHHHHhCCCCcEEEEEeccc
Confidence 48899999999999999998642112567666643 355554444
No 348
>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria}
Probab=73.37 E-value=3.3 Score=44.65 Aligned_cols=75 Identities=17% Similarity=0.200 Sum_probs=39.9
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCc--E-EEEEcC-CCCcchHHHHHHHHHHhcCCCC
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWF--V-SIKVDR-EERPDVDKVYMTYVQALYGGGG 203 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~F--V-~VkvD~-ee~pd~~~~y~~~~q~~~g~~G 203 (725)
.+.++.+-++++ |. -|+.+||++|+...+..++.-.| .| | .+.+|. ++.++ +++.++..+|...
T Consensus 251 ~~~V~~lI~~~~-Vv-VYsk~~CPyC~~Ak~~LL~~~gV------~y~eidVlEld~~~~~~e----~~~~L~~~tG~~T 318 (362)
T 2jad_A 251 IKHVKDLIAENE-IF-VASKTYCPYSHAALNTLFEKLKV------PRSKVLVLQLNDMKEGAD----IQAALYEINGQRT 318 (362)
T ss_dssp HHHHHHHHHTCS-EE-EEECTTCHHHHHHHHHHHTTTCC------CTTTEEEEEGGGSTTHHH----HHHHHHHHHCCCS
T ss_pred HHHHHHHhccCC-EE-EEEcCCCcchHHHHHHHHHHcCC------CcceEEEEEeccccCCHH----HHHHHHHHHCCCC
Confidence 344555555554 44 46779999999875423332221 23 2 223332 22233 3333444568888
Q ss_pred cCcEEEecCCCCcc
Q 004888 204 WPLSVFLSPDLKPL 217 (725)
Q Consensus 204 ~P~~vfl~pdG~~i 217 (725)
+|.++ + +|+.|
T Consensus 319 VPqVF-I--~Gk~I 329 (362)
T 2jad_A 319 VPNIY-I--NGKHI 329 (362)
T ss_dssp SCEEE-E--TTEEE
T ss_pred cCEEE-E--CCEEE
Confidence 89865 4 56655
No 349
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Probab=72.48 E-value=4 Score=38.61 Aligned_cols=43 Identities=12% Similarity=0.257 Sum_probs=28.4
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhc--CcEEEEEcC
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDR 181 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~--~FV~VkvD~ 181 (725)
..++++|.|+..+|+||..++...+ +++.+.... .|+++-++.
T Consensus 16 ~~~~~~ief~d~~CP~C~~~~~~l~--~~l~~~~~~~v~~~~~~l~~ 60 (195)
T 3c7m_A 16 NADKTLIKVFSYACPFCYKYDKAVT--GPVSEKVKDIVAFTPFHLET 60 (195)
T ss_dssp SCTTEEEEEECTTCHHHHHHHHHTH--HHHHHHTTTTCEEEEEECTT
T ss_pred CCCcEEEEEEeCcCcchhhCcHHHH--HHHHHhCCCceEEEEEecCc
Confidence 3567888999999999999986442 345444332 355555544
No 350
>2jg0_A Periplasmic trehalase; family 37, hydrolase, inhibitor, glycoside hydrolase, glycosidase, 1-thiatrehazolin; HET: TTZ; 1.50A {Escherichia coli} SCOP: a.102.1.9 PDB: 2jf4_A* 2jjb_A* 2wyn_A*
Probab=72.06 E-value=13 Score=42.11 Aligned_cols=129 Identities=19% Similarity=0.207 Sum_probs=71.3
Q ss_pred hhhcHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCCCCC
Q 004888 542 IVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSKAPG 617 (725)
Q Consensus 542 itsWNal~I~---aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s-~~~g~~~~~~ 617 (725)
.+.-|+++.. .|++.++.+|++.. ..+|.+.|.++.+.+.+.|||++.|.++.. ..+|......
T Consensus 304 ~VDlnA~ly~a~~~la~lA~~lG~~~~------------a~~~~~~A~~lk~ai~~~fWdee~G~y~D~~~~~~~~~~~~ 371 (535)
T 2jg0_A 304 PVDLNSLMFKMEKILARASKAAGDNAM------------ANQYETLANARQKGIEKYLWNDQQGWYADYDLKSHKVRNQL 371 (535)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCHHH------------HHHHHHHHHHHHHHHHHHSEETTTTEECCEETTTTEECCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCChHH------------HHHHHHHHHHHHHHHHHhCcCCCCCEEEEEeCCCCCEeeee
Confidence 3455677755 56777778886421 267999999999999999999988866432 2233221111
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCC--CCChHHHHHH
Q 004888 618 FLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGA--EPSGNSVSVI 695 (725)
Q Consensus 618 ~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a--~PS~Nsv~a~ 695 (725)
. +.+++-|+--.-++ +.|..+.+.+.+.|+.+ ||.-....+ ....-|+. =|--|..++.
T Consensus 372 ~-------~s~~~PL~~gi~~~---e~a~~v~~~l~~~l~t~--~GlrT~s~~-------s~~yW~GpNvW~~~~~l~i~ 432 (535)
T 2jg0_A 372 T-------AAALFPLYVNAAAK---DRANKMATATKTHLLQP--GGLNTTSVK-------SGQQWDAPNGWAPLQWVATE 432 (535)
T ss_dssp B-------GGGGHHHHTTCSCH---HHHHHHHHHHHHHTEET--TEECSBSCC-------CSSSSSTTEECHHHHHHHHH
T ss_pred h-------hhhHHHHhcCCCCH---HHHHHHHHHHHHHhccC--CCCCCCcCC-------CccccCCCCcchhHHHHHHH
Confidence 1 11222222111122 35777888887778652 343222111 11223443 2456667777
Q ss_pred HHHHHH
Q 004888 696 NLVRLA 701 (725)
Q Consensus 696 ~LlrL~ 701 (725)
.|.+.+
T Consensus 433 gL~~yG 438 (535)
T 2jg0_A 433 GLQNYG 438 (535)
T ss_dssp HHHTTT
T ss_pred HHHHcC
Confidence 766543
No 351
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=72.01 E-value=24 Score=41.43 Aligned_cols=96 Identities=15% Similarity=0.064 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccC--C----------CeEEEEecCCCCC
Q 004888 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQ--T----------HRLQHSFRNGPSK 614 (725)
Q Consensus 547 al~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~--~----------G~l~~s~~~g~~~ 614 (725)
++++.||.+++. ..+ +++.+...++.+||++...... + |++-.++.+ .
T Consensus 390 alal~AL~~ag~-~~~----------------~~~~~~l~ka~~~L~~~Q~~~~~~d~~~~~r~~~~GGW~f~~~~---~ 449 (732)
T 1w6k_A 390 AFAIQALLEAGG-HHR----------------PEFSSCLQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTLD---C 449 (732)
T ss_dssp HHHHHHHHHTTG-GGC----------------GGGHHHHHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCBSSCTT---T
T ss_pred HHHHHHHHHcCC-Ccc----------------hhhHHHHHHHHHHHHHhcccccCCcccccccCCCCCeecCCCCC---C
Confidence 888999998863 222 4577889999999987654321 1 222111111 1
Q ss_pred CCCCcchHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHccccCCCcc
Q 004888 615 APGFLDDYAFLISGLLDLYEFGS---GTKWLVWAIELQNTQDELFLDREGGGY 664 (725)
Q Consensus 615 ~~~~leDyA~li~aLL~LYe~Tg---d~~yL~~A~~L~~~~~~~F~D~~~Ggy 664 (725)
..+..++-|+++.+|..+....+ +....+...+..+.+...- .+ +|+|
T Consensus 450 ~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wLls~Q-~~-DGgw 500 (732)
T 1w6k_A 450 GWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMR-NP-DGGF 500 (732)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTC-CT-TSCB
T ss_pred CCCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhc-CC-CCCE
Confidence 22456677999999999987753 3333444455555555532 33 4666
No 352
>1wzz_A Probable endoglucanase; glycoside hydrolase family 8 (GH-8), (alpha/alpha)6 barrel, structural genomics; 1.65A {Gluconacetobacter xylinus} SCOP: a.102.1.2
Probab=71.23 E-value=8 Score=41.16 Aligned_cols=97 Identities=13% Similarity=0.102 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCCC-CC--CcchH
Q 004888 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSKA-PG--FLDDY 622 (725)
Q Consensus 547 al~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s-~~~g~~~~-~~--~leDy 622 (725)
-.++.||++|++.-++ ++|.+.|.++++.|.++-..+..|.+.-. ...|-... .. .++++
T Consensus 109 l~IA~ALl~A~~~Wg~----------------~~Y~~~A~~il~~i~~~~v~~~~g~~~llPg~~gf~~~~~~~~npSY~ 172 (334)
T 1wzz_A 109 LLIALALGRAGKRFQR----------------PDYIQDAMAIYGDVLNLMTMKAGPYVVLMPGAVGFTKKDSVILNLSYY 172 (334)
T ss_dssp HHHHHHHHHHHHHHTC----------------HHHHHHHHHHHHHHHHHHEEEETTEEEECSCSSSCBCSSEEEECGGGC
T ss_pred HHHHHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHHhcccCCCCeEEECCCcccccCCCCCeechhhc
Confidence 5789999999999987 78999999999999887665444543211 11111100 01 12222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCC
Q 004888 623 AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGG 662 (725)
Q Consensus 623 A~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~G 662 (725)
+..++-.+++.+++..|.+.+....+.+.+... +..|
T Consensus 173 --~p~~~~~fa~~~~~~~W~~~~~~~~~ll~~~~~-~~tG 209 (334)
T 1wzz_A 173 --VMPSLLQAFDLTADPRWRQVMEDGIRLVSAGRF-GQWR 209 (334)
T ss_dssp --CHHHHHHHHHHHCCTHHHHHHHHHHHHHHHSCB-TTTT
T ss_pred --CHHHHHHHHHccCCchHHHHHHHHHHHHHHccc-CCCC
Confidence 235666677889999999999988888766533 3344
No 353
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=69.46 E-value=8.4 Score=35.07 Aligned_cols=44 Identities=11% Similarity=-0.041 Sum_probs=27.6
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcC-cEEEEEcCCCCcchHH
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDK 189 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~-FV~VkvD~ee~pd~~~ 189 (725)
++-+++++|++|++.++- ..+..+|+.+ .-...+|++..|+..+
T Consensus 2 V~vYtt~~c~~c~~kk~c----~~aK~lL~~kgV~feEidI~~d~~~r~ 46 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKKQ----QDVLGFLEANKIGFEEKDIAANEENRK 46 (121)
T ss_dssp EEEEECTTCSCHHHHHHH----HHHHHHHHHTTCCEEEEECTTCHHHHH
T ss_pred EEEEecCCCCCccchHHH----HHHHHHHHHCCCceEEEECCCCHHHHH
Confidence 455679999999866542 3566777754 3334467766565443
No 354
>2yik_A Endoglucanase; hydrolase; 2.10A {Clostridium thermocellum}
Probab=68.92 E-value=38 Score=38.89 Aligned_cols=122 Identities=13% Similarity=-0.025 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHhc---cccCCCeEEEEecCC--------CCC---CCC----------CcchHHHHHHHHHHHHH
Q 004888 579 KEYMEVAESAASFIRRHL---YDEQTHRLQHSFRNG--------PSK---APG----------FLDDYAFLISGLLDLYE 634 (725)
Q Consensus 579 ~~yl~~A~~~a~~l~~~l---~d~~~G~l~~s~~~g--------~~~---~~~----------~leDyA~li~aLL~LYe 634 (725)
++.++.++=.++|+++.- .++..|.+++...+| .+. ..+ -.+--+.++-+|...+.
T Consensus 152 ~d~ldeikwg~Dyllkmq~~~~~~~~g~~y~qVgdg~~Dh~~w~~Pe~~~~~R~~y~v~~~~pgsd~a~~~AAAlAaAS~ 231 (611)
T 2yik_A 152 VHAEVILRYFNDYFMRCTFRDASGNVVAFCHQVGDGDIDHAFWGAPENDTMFRRGWFITKEKPGTDIISATAASLAINYM 231 (611)
T ss_dssp HHHHHHHHHHHHHHHHTEEECTTSCEEEEEEEESCHHHHTTCCSCGGGCCSCCCEEEEBTTBCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHcccccccCCCCcEEEEeCCCCccccCCCChhhCCCCCcceeecCCCCccHHHHHHHHHHHHHHH
Confidence 789999999999999842 145567888775442 110 001 01112455666666666
Q ss_pred HcC--C----HHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccccCCCCCCCC--hHHHHHHHHHHHHHhhCC
Q 004888 635 FGS--G----TKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPS--GNSVSVINLVRLASIVAG 706 (725)
Q Consensus 635 ~Tg--d----~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS--~Nsv~a~~LlrL~~~t~~ 706 (725)
+.. | .++|+.|+++++++.++- |.|...... .-+...| -.--.+-+-..|+..||+
T Consensus 232 vfk~~D~~yA~~~L~~Ak~~~~fA~~~~-----~~y~~~~~~-----------~~~~Y~ss~~~DEl~WAAawLy~ATgd 295 (611)
T 2yik_A 232 NFKDTDPQYAAKSLDYAKALFDFAEKNP-----KGVVQGEDG-----------PKGYYGSSKWQDDYCWAAAWLYLATQN 295 (611)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHHSC-----CCCCCGGGT-----------TTTTSCCCCSHHHHHHHHHHHHHHHCC
T ss_pred hccccCHHHHHHHHHHHHHHHHHHHHcC-----CcccCCCcc-----------cCcCCCCCCcccHHHHHHHHHHHHhCC
Confidence 654 3 356888888888887642 223111000 0001111 112345566788999997
Q ss_pred CCchHHHHHHHHH
Q 004888 707 SKSDYYRQNAEHS 719 (725)
Q Consensus 707 ~~~~~y~~~A~~~ 719 (725)
..|++.+++.
T Consensus 296 ---~~Yl~~a~~~ 305 (611)
T 2yik_A 296 ---EHYLDEAFKY 305 (611)
T ss_dssp ---HHHHHHHHHH
T ss_pred ---HHHHHHHHHH
Confidence 7899998874
No 355
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=68.87 E-value=7.9 Score=38.28 Aligned_cols=86 Identities=12% Similarity=0.085 Sum_probs=52.1
Q ss_pred hhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCC
Q 004888 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (725)
Q Consensus 135 k~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG 214 (725)
+...+++.|.|...-|..++...- +++....|.|..-.+..+++.+.| |+.++|+.|+++++|
T Consensus 154 ~~~~~~~al~f~~~~~~~~~~~~~---------d~~~~~~i~v~~~~~~~~~l~~~f--------~v~~~Pslvl~~~~g 216 (244)
T 3q6o_A 154 RNNEEYLALIFEXGGSYLAREVAL---------DLSQHKGVAVRRVLNTEANVVRKF--------GVTDFPSCYLLFRNG 216 (244)
T ss_dssp HCCCSEEEEEEECTTCCHHHHHHH---------HTTTCTTEEEEEEETTCHHHHHHH--------TCCCSSEEEEEETTS
T ss_pred cCCCceEEEEEEECCcchHHHHHH---------HhccCCceEEEEEeCchHHHHHHc--------CCCCCCeEEEEeCCC
Confidence 467788888888777665544322 334334455554334445565555 899999999999999
Q ss_pred CccccccccCCCCCCCcchHHHHHHHHH
Q 004888 215 KPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (725)
Q Consensus 215 ~~i~~~tY~p~~~~~~~~~F~~~L~~i~ 242 (725)
++...-. ....+..|-..|+++.
T Consensus 217 ~~~~~~~-----~~~~r~~~~~~l~~~~ 239 (244)
T 3q6o_A 217 SVSRVPV-----LMESRSFYTAYLQRLS 239 (244)
T ss_dssp CEEECCC-----SSSSHHHHHHHHHTC-
T ss_pred CeEeecc-----ccccHHHHHHHHHhCC
Confidence 9764321 1123344555555543
No 356
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=68.38 E-value=3.7 Score=44.95 Aligned_cols=42 Identities=14% Similarity=0.037 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHc-c--CChHHHHHHHHHHHHHHHhccCCCCcee
Q 004888 382 QGQLANVYLDAFSL-T--KDVFYSYICRDILDYLRRDMIGPGGEIF 424 (725)
Q Consensus 382 NA~Ll~~ya~Ay~~-t--~d~~y~~vA~~~~~fl~~~m~~~~Ggfy 424 (725)
-+..+.++++++.. + +++.|++.++++++||+. |+.++||+-
T Consensus 151 Ta~vl~aL~rv~~~~t~~~~~~y~~Ai~Rgl~wlL~-mQ~~nGGWp 195 (408)
T 1r76_A 151 TVTEIRFLAQVVSQLAPEEAAPYRDAALKGIEYLLA-SQFPNGGWP 195 (408)
T ss_dssp THHHHHHHHHHHHHSCGGGCHHHHHHHHHHHHHHHH-HSCTTSCCB
T ss_pred HHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHH-ccCCCCCCc
Confidence 57788899999998 7 899999999999999997 999999983
No 357
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=67.08 E-value=63 Score=39.46 Aligned_cols=123 Identities=15% Similarity=0.080 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEec-CCCCCCCC-CcchHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHcccc
Q 004888 583 EVAESAASFIRRHLYDEQTHRLQHSFR-NGPSKAPG-FLDDYAFLISGLLDLYEFGSGTKWLV-WAIELQNTQDELFLDR 659 (725)
Q Consensus 583 ~~A~~~a~~l~~~l~d~~~G~l~~s~~-~g~~~~~~-~leDyA~li~aLL~LYe~Tgd~~yL~-~A~~L~~~~~~~F~D~ 659 (725)
+.|++..+||.+.... .+|.+.|.|. +|.+...+ .+|-++..+.++..+++ + |..... ..+..++++.++ +.
T Consensus 348 e~A~~~l~~L~~~Q~~-~~G~~~~~y~i~G~~~w~~~Q~D~~g~~l~~~~~~~~-~-d~~~w~~~v~~al~~i~~~-g~- 422 (1020)
T 1ulv_A 348 EAAARGVEWLFTYQQQ-PDGHFPQTSRVDGTIGQNGIQLDETAFPILLANQIGR-T-DAGFYRNELKPAADYLVAA-GP- 422 (1020)
T ss_dssp HHHHHHHHHHHHHTCC-TTSCCCSCBCTTSCBCCCCCBTHHHHHHHHHHHHHTC-C-CHHHHHHTHHHHHHHHHHH-CS-
T ss_pred HHHHHHHHHHHHHhcC-CCCCeeeEEecCCCcCCCCccCccchHHHHHHHHHHh-c-CHHHHHHHHHHHHHHHHHh-CC-
Confidence 5677788888765523 2577777763 56554432 55778888888888765 4 444444 677777777665 21
Q ss_pred CCCcccccCCCCCccccccccCCCCCCCChHHHHH---HHHHHHHHhhCCC-CchHHHHHHHHHHHHh
Q 004888 660 EGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSV---INLVRLASIVAGS-KSDYYRQNAEHSLYLR 723 (725)
Q Consensus 660 ~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a---~~LlrL~~~t~~~-~~~~y~~~A~~~l~~~ 723 (725)
.. ..+ .++...+..|+.++... ....+|++..|+. ....|++.|+++-+.+
T Consensus 423 ~~------~~~-------~WEe~~g~~~~t~~~~~~AL~~aa~lA~~~G~~~~a~~w~~~Ad~i~~~i 477 (1020)
T 1ulv_A 423 KT------PQE-------RWEETGGYSTSTLASQIAALAAAADIAGKNGDAGSAAVYRATADEWQRST 477 (1020)
T ss_dssp CB------SBC-------TTSSCCBEEHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTH
T ss_pred CC------Chh-------hhcccCCcCHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHH
Confidence 10 100 12222334455565433 4445666666642 1246888888877654
No 358
>3cih_A Putative alpha-rhamnosidase; structural genomics, protein structure initiative II, NYSGXRC, (alpha/alpha)6 barrel domain; 2.33A {Bacteroides thetaiotaomicron vpi-5482}
Probab=66.77 E-value=20 Score=42.07 Aligned_cols=111 Identities=6% Similarity=0.026 Sum_probs=71.3
Q ss_pred hhhcHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-----cCCC---C
Q 004888 542 IVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-----RNGP---S 613 (725)
Q Consensus 542 itsWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~-----~~g~---~ 613 (725)
+..+..+.+.++.+.++.+||... .++.....++..+|+.++. ++ +|.+.... .+.. .
T Consensus 382 ~~d~~l~wi~~~~~yy~~tGD~~~------------L~e~~p~l~~~ld~~~~~~-d~-~GL~~~~~G~W~~~dW~d~~~ 447 (739)
T 3cih_A 382 IMDYTFYWFLSVYDYYMYSGDRHF------------VNQLYPRMQTMMDYVLGRT-NK-NGMVEGMSGDWVFVDWADGYL 447 (739)
T ss_dssp BHHHHHHHHHHHHHHHHHHCCHHH------------HHHHHHHHHHHHHHHHTTB-CT-TSCBCCCTTCBCCSCCCTTCC
T ss_pred ccchhHHHHHHHHHHHHHhCCHHH------------HHHHHHHHHHHHHHHHHhc-CC-CCCcccCCCCcccCCCccccc
Confidence 345667778899999999998431 2566777888888887754 43 44322110 0100 0
Q ss_pred CCCC-CcchHHHHHH---HHHHHHHHcCCH----HHHHHHHHHHHHHHHHccccCCCcccc
Q 004888 614 KAPG-FLDDYAFLIS---GLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFN 666 (725)
Q Consensus 614 ~~~~-~leDyA~li~---aLL~LYe~Tgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~ 666 (725)
...+ ..+..+++.. .+.++.++.|++ +|.+.|++|.+.+.++|||++.|.|..
T Consensus 448 ~~~G~~~~~~a~~y~al~~~a~lA~~lG~~~~A~~y~~~A~~lk~a~~~~~wd~~~G~y~~ 508 (739)
T 3cih_A 448 DKKGELSFEQVLFCRSLETMALCADLVGDKDGQQKYEKLASALKAKLEPTFWNNQKQAFVH 508 (739)
T ss_dssp CCSSEEHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHEETTTTEECS
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHhccCcccCeeEe
Confidence 0111 2234455444 445667777874 589999999999999999988777764
No 359
>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP}
Probab=64.59 E-value=1.2e+02 Score=36.38 Aligned_cols=132 Identities=13% Similarity=0.142 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc---c
Q 004888 583 EVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDY-AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL---D 658 (725)
Q Consensus 583 ~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~leDy-A~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~---D 658 (725)
+.+++..+.+..... .+|.+.+...++. .....|+ .+++.++.++|+.|||.++|+..-..++...+.+. |
T Consensus 595 ~lar~~L~~l~~~Q~--~dG~ip~~~p~~~---~~~~~~~~~~~i~~~~~yy~~tGD~~~L~e~yp~lk~~l~~~~~~~d 669 (956)
T 2okx_A 595 EIVERCLNLVPGSAD--ETPLYLDQVPSAW---SSVIPNWTFFWILACREYAAHTGNEAFAARIWPAVKHTLTHYLEHID 669 (956)
T ss_dssp HHHHHHHHHGGGGTT--TCTTCCSBSSCSS---CCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHhhcc--cCCCcCccccccc---cCCCcChHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344555544443322 2455544332211 1223455 47788999999999999998765555544444332 3
Q ss_pred cCCCcccccCCCCCcccccccc---CCCCCCCChHHH---HHHHHHHHHHhhCCCC-chHHHHHHHHHHHHhh
Q 004888 659 REGGGYFNTTGEDPSVLLRVKE---DHDGAEPSGNSV---SVINLVRLASIVAGSK-SDYYRQNAEHSLYLRQ 724 (725)
Q Consensus 659 ~~~Ggyf~t~~~~~~~~~r~k~---~~D~a~PS~Nsv---~a~~LlrL~~~t~~~~-~~~y~~~A~~~l~~~~ 724 (725)
+ .| +..... ... ..+.+ ..++.....|+. ++..+.+|++++|+.+ ...|++.|+++-+.|.
T Consensus 670 ~-~G-Ll~~~~--~~~-~DW~d~~~~~~G~~~~~~a~~~~al~~~a~lA~~LG~~~~a~~y~~~A~~lk~ai~ 737 (956)
T 2okx_A 670 D-SG-LLNMAG--WNL-LDWAPIDQPNEGIVTHQNLFLVKALRDSRALAAAAGATEEADAFAARADLLAETIN 737 (956)
T ss_dssp T-TS-SBCCSS--CCC-CCSSSCCCCSSSEEHHHHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHH
T ss_pred C-CC-CEEeCC--CCc-cCccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 3 23 222110 000 00000 011222234554 4555667777887642 3569999999887763
No 360
>3ren_A Glycosyl hydrolase, family 8; (alpha/alpha)6-barrel fold, alpha-amylase; 2.00A {Clostridium perfringens}
Probab=64.54 E-value=16 Score=39.17 Aligned_cols=119 Identities=11% Similarity=0.062 Sum_probs=73.8
Q ss_pred HHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCC-Ccc
Q 004888 586 ESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREG-GGY 664 (725)
Q Consensus 586 ~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~-Ggy 664 (725)
.++.+|.++++. +++.+.+.+..+......-.+|=-..+.||+.+.+..+++.|.+.|.+|...+..+-+.... ..|
T Consensus 82 d~l~~~t~~~l~--~~~L~sWr~~~~~~~~nNAtdgDl~IA~ALl~A~~~W~~~~Y~~~A~~I~~~i~~~~~~~g~l~~~ 159 (350)
T 3ren_A 82 DEHFDIVKEMRL--KNGLISWRKEGDENSPSSATIDELRIIKALLLANNRWNSFYYKFYAINIANSLLKHAEENETLVDY 159 (350)
T ss_dssp HHHHHHHHTTBC--TTSSBCSEEETTEECSCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEETTEECSE
T ss_pred HHHHHHHHHHhc--cCCceEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHccccCcccCC
Confidence 467788889988 36666665543222122234455688999999999999999999999999999998654210 123
Q ss_pred cccCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhh
Q 004888 665 FNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLYLRQ 724 (725)
Q Consensus 665 f~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~t~~~~~~~y~~~A~~~l~~~~ 724 (725)
|+.... ..+++ || =++...+-.|+... ..|++.+++.++.+.
T Consensus 160 ~d~~~~--~~~ln---------~S--Y~~~~a~~~f~~~~-----~~W~~l~~~g~~lL~ 201 (350)
T 3ren_A 160 IDNYGK--GNTTT---------LC--YLDLPTMKLLSQVD-----KKWEGIYEKSNSIIE 201 (350)
T ss_dssp ECSSCB--CSEEE---------GG--GCCHHHHHHHHHHC-----THHHHHHHHHHHHHH
T ss_pred CCccCC--CCEee---------hH--hcCHHHHHHHHHhc-----chHHHHHHHHHHHHH
Confidence 332211 22222 11 13444555566652 357777777666553
No 361
>1v5d_A Chitosanase; chitosan degradation, hydrolase, glycosil hydrolase, family 8; HET: PIN; 1.50A {Bacillus SP} SCOP: a.102.1.2 PDB: 1v5c_A*
Probab=62.84 E-value=10 Score=41.21 Aligned_cols=94 Identities=18% Similarity=0.172 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 004888 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 626 (725)
Q Consensus 547 al~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~leDyA~li 626 (725)
-.++.||++|++.-++.+ ..+|.+.|+++++.|.++...+.++.+. ..+......-++...=+..
T Consensus 138 l~IA~ALl~A~~~Wg~~g-------------~~~Y~~~A~~il~~i~~~~~~~~~~~l~--~g~~~~~~~~~~npSY~~p 202 (386)
T 1v5d_A 138 LDIAYSLLLAHKQWGSNG-------------TVNYLKEAQDMITKGIKASNVTNNNQLN--LGDWDSKSSLDTRPSDWMM 202 (386)
T ss_dssp HHHHHHHHHHHHHHCSSS-------------SSCHHHHHHHHHHHTHHHHHBCTTSSBC--SSTTSCTTCCCBCGGGCCH
T ss_pred HHHHHHHHHHHHHcCCCc-------------hHhHHHHHHHHHHHHHHhcccCCCCeee--ecccCCCCCCeechhhccH
Confidence 578899999999998721 1379999999999998776654444332 1111110111222222344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004888 627 SGLLDLYEFGSGTKWLVWAIELQNTQDEL 655 (725)
Q Consensus 627 ~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~ 655 (725)
..|-.+|+++++..|.+.+....+.+.+.
T Consensus 203 ~~l~~f~~~~~~~~W~~v~~~~~~~l~~~ 231 (386)
T 1v5d_A 203 SHLRAFYEFTGDKTWLTVINNLYDVYTQF 231 (386)
T ss_dssp HHHHHHHHHHCCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 56677788899999999988877775543
No 362
>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19
Probab=62.55 E-value=21 Score=36.91 Aligned_cols=18 Identities=11% Similarity=0.215 Sum_probs=14.5
Q ss_pred EEEEEeccCChhhHhhhh
Q 004888 141 IFLSIGYSTCHWCHVMEV 158 (725)
Q Consensus 141 I~l~~g~~wC~~C~~Me~ 158 (725)
.+..|+..+|++|...++
T Consensus 45 ~VelyTs~gCp~C~~Ak~ 62 (270)
T 2axo_A 45 VVELFTSQGCASCPPADE 62 (270)
T ss_dssp EEEEEECTTCTTCHHHHH
T ss_pred EEEEEeCCCCCChHHHHH
Confidence 555689999999998763
No 363
>3a0o_A Oligo alginate lyase; alpha/alpha ballel+anti-parallel beta sheet; 2.11A {Agrobacterium tumefaciens} PDB: 3afl_A*
Probab=62.35 E-value=97 Score=36.20 Aligned_cols=27 Identities=11% Similarity=-0.298 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHH
Q 004888 383 GQLANVYLDAFSLTKDVFYSYICRDIL 409 (725)
Q Consensus 383 A~Ll~~ya~Ay~~t~d~~y~~vA~~~~ 409 (725)
...+..++-||.+|+|+.|.+.|++.+
T Consensus 209 ~~~l~~la~ay~ltgd~kya~~a~~~L 235 (776)
T 3a0o_A 209 IYAIRHLAIAGRVLGRDDLLDASRKWL 235 (776)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 677888999999999999998877754
No 364
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=61.40 E-value=17 Score=40.11 Aligned_cols=118 Identities=16% Similarity=0.133 Sum_probs=64.1
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCChhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCeEEEEe
Q 004888 286 RLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYS 365 (725)
Q Consensus 286 ~~~~~~l~~~~D~~~GGfg~apKFP~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~ma~gGi~D~v~GGF~RYs 365 (725)
++.++-+.+......|||+...+- .+..+.+.+......+. ......++-+...|..|.. -+|||..|
T Consensus 76 ~~hi~~l~~~lq~~~gg~~a~D~~-r~~l~y~~l~aL~lLg~----~~~~~~~~r~v~~l~s~Q~------~dGGf~g~- 143 (437)
T 2h6f_B 76 EKHFHYLKRGLRQLTDAYECLDAS-RPWLCYWILHSLELLDE----PIPQIVATDVCQFLELCQS------PEGGFGGG- 143 (437)
T ss_dssp HHHHHHHHHHTTEECGGGGGGTTC-HHHHHHHHHHHHHHTTC----CCCHHHHHHHHHHHHHHBC------TTSSBBSS-
T ss_pred HHHHHHHHHcCCCCCCCcccccCC-CccHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHhCC------CCCCcCCc-
Confidence 555666766656678898875543 23333333322222111 1123445555666666643 47999874
Q ss_pred cCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChH-HHH-HHHHHHHHHHHhccCCCCceeeec
Q 004888 366 VDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVF-YSY-ICRDILDYLRRDMIGPGGEIFSAE 427 (725)
Q Consensus 366 ~D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~-y~~-vA~~~~~fl~~~m~~~~Ggfysa~ 427 (725)
.|..+|-. .-...+.++ .+.++.. +.+ ..+++++||.+ ++.++|||+...
T Consensus 144 ---~~~~~~i~----~T~~Al~aL----~~lg~~~~~~~i~i~kav~~L~s-~Q~~DGsf~~~~ 195 (437)
T 2h6f_B 144 ---PGQYPHLA----PTYAAVNAL----CIIGTEEAYDIINREKLLQYLYS-LKQPDGSFLMHV 195 (437)
T ss_dssp ---TTCCBCHH----HHHHHHHHH----HHHCCHHHHTTSCHHHHHHHHHT-TBCTTSCBBSST
T ss_pred ---cCCCcchh----HHHHHHHHH----HHhCCcccccchHHHHHHHHHHH-hCCCCCCeeecC
Confidence 47777643 222222222 2233321 111 25789999986 788999998643
No 365
>2z07_A Putative uncharacterized protein TTHA0978; uncharacterized conserved protein, structural genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=56.89 E-value=35 Score=36.66 Aligned_cols=46 Identities=24% Similarity=0.276 Sum_probs=35.1
Q ss_pred HHHHHH---HHHHHHHHcCC--HHHHHHHHHHHHHHHHHccccCCCcccccC
Q 004888 622 YAFLIS---GLLDLYEFGSG--TKWLVWAIELQNTQDELFLDREGGGYFNTT 668 (725)
Q Consensus 622 yA~li~---aLL~LYe~Tgd--~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~ 668 (725)
.|++.. .+.++++..|+ .+|.+.|+++.+.+.+ |||++.|.||+..
T Consensus 238 na~~~~~~~~la~la~~lg~~a~~~~~~a~~~~~ai~~-~Wd~~~g~~~d~~ 288 (420)
T 2z07_A 238 NAILQRANRDLYALAVLLQEDPYEIEEWIVRGEVGLEA-LWDREAGFYFSWD 288 (420)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH-TEETTTTEECCEE
T ss_pred HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH-hhCcccCeeEeee
Confidence 355444 44556666775 6899999999999999 9999988888643
No 366
>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A
Probab=56.21 E-value=9.2 Score=34.77 Aligned_cols=60 Identities=10% Similarity=0.023 Sum_probs=31.3
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcC-cEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCC
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~-FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~ 215 (725)
+..++.++|++|++.. ++|+++ .-+..+|+.+.|.-...+...++ ..|.|.--+++..|.
T Consensus 3 i~lY~~~~C~~C~ka~----------~~L~~~gi~y~~~di~~~~~~~~el~~~l~----~~~~~~~~l~n~~~~ 63 (132)
T 1z3e_A 3 VTLYTSPSCTSCRKAR----------AWLEEHEIPFVERNIFSEPLSIDEIKQILR----MTEDGTDEIISTRSK 63 (132)
T ss_dssp EEEEECTTCHHHHHHH----------HHHHHTTCCEEEEETTTSCCCHHHHHHHHH----TCSSCGGGTBCTTSH
T ss_pred EEEEeCCCChHHHHHH----------HHHHHcCCceEEEEccCCCccHHHHHHHHH----HcCCCHHHhhcCCch
Confidence 4457899999999765 233332 22234566555443334433332 224444445555544
No 367
>1kwf_A Endoglucanase A; hydrolase, inverting glycosidase, atomic resolution, protein-carbohydrate interactions, reaction mechanism, cellulase; HET: BGC; 0.94A {Clostridium thermocellum} SCOP: a.102.1.2 PDB: 1is9_A 1cem_A
Probab=56.06 E-value=1.1e+02 Score=32.81 Aligned_cols=122 Identities=12% Similarity=0.094 Sum_probs=72.4
Q ss_pred HHHHHHHHHhccccCCCeEEEEec-CCCC-C----CCCCcchHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHc
Q 004888 586 ESAASFIRRHLYDEQTHRLQHSFR-NGPS-K----APGFLDDYAFLISGLLDLYEFGSGT---KWLVWAIELQNTQDELF 656 (725)
Q Consensus 586 ~~~a~~l~~~l~d~~~G~l~~s~~-~g~~-~----~~~~leDyA~li~aLL~LYe~Tgd~---~yL~~A~~L~~~~~~~F 656 (725)
.++..|.+.++.+ +|.+-+.+. +|.. . ...=.++=-+.+.||+.+.+..|+. .|++.|.+|.+.+.++-
T Consensus 82 d~l~~wt~~~~~~--~~l~aW~~~~~g~~~~~~d~~~~AtDgDl~IA~ALl~A~~~W~~~g~~~Y~~~A~~i~~~i~~~~ 159 (363)
T 1kwf_A 82 DDLYRYVKSHFNG--NGLMHWHIDANNNVTSHDGGDGAATDADEDIALALIFADKLWGSSGAINYGQEARTLINNLYNHC 159 (363)
T ss_dssp HHHHHHHHTTBCT--TSSBCSEECTTSCBCTTTTTTSCBHHHHHHHHHHHHHHHHHHCSSSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--CCCeEEEECCCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHh
Confidence 4566777778743 454444443 2321 1 1123455578999999999999988 89999999999999987
Q ss_pred cccCCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 004888 657 LDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLYLR 723 (725)
Q Consensus 657 ~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~t~~~~~~~y~~~A~~~l~~~ 723 (725)
+.+ |.+.-.+.+.. ...+...||= .+-..+-.++..+++ ..|.+.++..++.+
T Consensus 160 ~~~--~~~~l~pg~~~-------~~~~~~npSY--~~p~~~~~fa~~~~~---~~W~~~~~~~~~~l 212 (363)
T 1kwf_A 160 VEH--GSYVLKPGDRW-------GGSSVTNPSY--FAPAWYKVYAQYTGD---TRWNQVADKCYQIV 212 (363)
T ss_dssp BCT--TTCCBCSBSSS-------CBTTBBCGGG--CCHHHHHHHHHHHCC---THHHHHHHHHHHHH
T ss_pred ccC--CCeEEeccccC-------CCCCEecchh--cCHHHHHHHHHccCC---chHHHHHHHHHHHH
Confidence 652 32211221100 0001122332 233444555667665 57888888766654
No 368
>1kwf_A Endoglucanase A; hydrolase, inverting glycosidase, atomic resolution, protein-carbohydrate interactions, reaction mechanism, cellulase; HET: BGC; 0.94A {Clostridium thermocellum} SCOP: a.102.1.2 PDB: 1is9_A 1cem_A
Probab=55.03 E-value=1.7e+02 Score=31.27 Aligned_cols=94 Identities=13% Similarity=0.064 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 004888 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 626 (725)
Q Consensus 547 al~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~leDyA~li 626 (725)
-.++.||++|++.-|+.+ ..+|.+.|+++++.|.++.+.+....+. ..+... ...+++.-=++.
T Consensus 123 l~IA~ALl~A~~~W~~~g-------------~~~Y~~~A~~i~~~i~~~~~~~~~~~l~--pg~~~~-~~~~~npSY~~p 186 (363)
T 1kwf_A 123 EDIALALIFADKLWGSSG-------------AINYGQEARTLINNLYNHCVEHGSYVLK--PGDRWG-GSSVTNPSYFAP 186 (363)
T ss_dssp HHHHHHHHHHHHHHCSSS-------------SSCHHHHHHHHHHHHHHHHBCTTTCCBC--SBSSSC-BTTBBCGGGCCH
T ss_pred HHHHHHHHHHHHHhCCCc-------------chhHHHHHHHHHHHHHHHhccCCCeEEe--ccccCC-CCCEecchhcCH
Confidence 578999999999998721 1269999999999999887764221111 111000 011222111223
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 004888 627 SGLLDLYEFGSGTKWLVWAIELQNTQDELF 656 (725)
Q Consensus 627 ~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F 656 (725)
..+-.+++.+++..|.+.+....+.+.+..
T Consensus 187 ~~~~~fa~~~~~~~W~~~~~~~~~~l~~~~ 216 (363)
T 1kwf_A 187 AWYKVYAQYTGDTRWNQVADKCYQIVEEVK 216 (363)
T ss_dssp HHHHHHHHHHCCTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCCchHHHHHHHHHHHHHHHh
Confidence 344455677889899998888877766543
No 369
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=54.07 E-value=10 Score=34.01 Aligned_cols=61 Identities=13% Similarity=0.029 Sum_probs=34.5
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCc
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~ 216 (725)
+..++.++|++|++-. ++|++ +.-+..+|+.+.|.-.......++. .|.|.--+++..|..
T Consensus 2 i~iY~~~~C~~c~ka~----------~~L~~~gi~~~~~di~~~~~~~~el~~~l~~----~~~~~~~l~n~~~~~ 63 (120)
T 3l78_A 2 VTLFLSPSCTSCRKAR----------AWLNRHDVVFQEHNIMTSPLSRDELLKILSY----TENGTEDIISTRSKV 63 (120)
T ss_dssp EEEEECSSCHHHHHHH----------HHHHHTTCCEEEEETTTSCCCHHHHHHHHHH----CSSTHHHHBCTTCHH
T ss_pred EEEEeCCCCHHHHHHH----------HHHHHcCCCeEEEecccCCCcHHHHHHHHhh----cCCCHHHhhcCCcHH
Confidence 3457899999999865 34443 2223345665544444444444433 255655667766553
No 370
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=53.92 E-value=12 Score=33.67 Aligned_cols=60 Identities=17% Similarity=0.319 Sum_probs=35.5
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhc-CcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCC
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~-~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~ 215 (725)
+..++.++|.+|++-. ++|++ +.-+..+|+.+.|.-.......++.+ |.|.--+++..|.
T Consensus 5 i~iY~~~~C~~c~ka~----------~~L~~~gi~~~~~di~~~~~~~~eL~~~l~~~----g~~~~~l~n~~~~ 65 (120)
T 3fz4_A 5 LTFYEYPKCSTCRRAK----------AELDDLAWDYDAIDIKKNPPAASLIRNWLENS----GLELKKFFNTSGQ 65 (120)
T ss_dssp EEEEECSSCHHHHHHH----------HHHHHHTCCEEEEETTTSCCCHHHHHHHHHHS----CCCGGGGBCTTSH
T ss_pred EEEEeCCCChHHHHHH----------HHHHHcCCceEEEEeccCchhHHHHHHHHHHc----CCCHHHHhCCCCc
Confidence 3456899999999865 34444 23334466665554444444444433 6666666666655
No 371
>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A*
Probab=53.16 E-value=36 Score=40.06 Aligned_cols=110 Identities=13% Similarity=0.082 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCC---CChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC-C---CCCCc
Q 004888 547 GLVISSFARASKILKSEAESAMFNFPVVG---SDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS-K---APGFL 619 (725)
Q Consensus 547 al~I~aLa~A~~vl~d~~~~~~~~~~~~~---~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~-~---~~~~l 619 (725)
.+.+.++.+.++.+||.. |=..+.. .......+..+++.+|+.+++ ++ +|.+.....+... . .....
T Consensus 429 lw~~~~~~~y~~~tGD~~----~L~e~~p~~~~~~~~v~e~~~~~~~~~~~~~-~~-~GL~~~~~~DW~D~~~~~~g~~v 502 (807)
T 1v7w_A 429 LWLIPTICKYVMETGETS----FFDQMIPYADGGEASVYEHMKAALDFSAEYV-GQ-TGICKGLRADWNDCLNLGGGESS 502 (807)
T ss_dssp GGHHHHHHHHHHHHCCGG----GGGCEEECTTSCEEEHHHHHHHHHHHHHHSB-CT-TSCBEEETCSSSTTCCCEEEEEH
T ss_pred hHHHHHHHHHHHHhCCHH----HHhcccccccCCcchHHHHHHHHHHHHHhcC-CC-CCCcccCCCCCCCcCCCCCCeeh
Confidence 667889999999999843 1100100 000012345888888988764 54 5654432222110 0 11122
Q ss_pred chHHHH---HHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHccccCCC
Q 004888 620 DDYAFL---ISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGG 662 (725)
Q Consensus 620 eDyA~l---i~aLL~LYe~Tgd~----~yL~~A~~L~~~~~~~F~D~~~G 662 (725)
+-.|++ +..+.++.+..|++ +|.+.|++|.+.+.++|||+++|
T Consensus 503 ~~~a~~y~al~~~a~la~~lG~~~~a~~~~~~A~~lk~~~~~~~w~~~~~ 552 (807)
T 1v7w_A 503 MVSFLHFWALQEFIDLAKFLGKDQDVNTYTEMAANVREACETHLWDDEGG 552 (807)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHSEETTTT
T ss_pred hHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 334444 44455666777874 58899999999999999998744
No 372
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=51.43 E-value=8.1 Score=35.86 Aligned_cols=61 Identities=8% Similarity=0.105 Sum_probs=37.0
Q ss_pred EEEeccCChhhHhhhhhccCCHHHHHHHhcC-cEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCcc
Q 004888 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (725)
Q Consensus 143 l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~-FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i 217 (725)
..++.++|.+|++-. ++|+++ .-+..+|+.+.|.-........+.+ |+|.--+++..|...
T Consensus 5 tiY~~p~C~~crkak----------~~L~~~gi~~~~idi~~~~~~~~eL~~~~~~~----g~p~~~l~n~~~~~y 66 (141)
T 1s3c_A 5 TIYHNPASGTSRNTL----------EMIRNSGTEPTIILYLENPPSRDELVKLIADM----GISVRALLRKNVEPY 66 (141)
T ss_dssp EEECCTTCHHHHHHH----------HHHHHTTCCCEEECTTTSCCCHHHHHHHHHHH----TSCHHHHBCSSSHHH
T ss_pred EEEECCCChHHHHHH----------HHHHHcCCCEEEEECCCCCccHHHHHHHhccc----CCCHHHhccCCchhH
Confidence 457889999999754 455543 3333466665544333444444333 888777777776544
No 373
>3ren_A Glycosyl hydrolase, family 8; (alpha/alpha)6-barrel fold, alpha-amylase; 2.00A {Clostridium perfringens}
Probab=50.62 E-value=35 Score=36.59 Aligned_cols=87 Identities=14% Similarity=0.037 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 004888 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 626 (725)
Q Consensus 547 al~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~leDyA~li 626 (725)
-++++||++|++..++ ++|.+.|.+++.-|.++... +|.+.. +.+.... ..++.---+..
T Consensus 117 l~IA~ALl~A~~~W~~----------------~~Y~~~A~~I~~~i~~~~~~--~g~l~~-~~d~~~~-~~~ln~SY~~~ 176 (350)
T 3ren_A 117 LRIIKALLLANNRWNS----------------FYYKFYAINIANSLLKHAEE--NETLVD-YIDNYGK-GNTTTLCYLDL 176 (350)
T ss_dssp HHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHHHEE--TTEECS-EECSSCB-CSEEEGGGCCH
T ss_pred HHHHHHHHHHHHHcCc----------------HHHHHHHHHHHHHHHHHccc--cCcccC-CCCccCC-CCEeehHhcCH
Confidence 5789999999999987 78999999999999988765 354432 2222111 22233333455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004888 627 SGLLDLYEFGSGTKWLVWAIELQNTQDEL 655 (725)
Q Consensus 627 ~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~ 655 (725)
.++-.+++. +..|.+.+..-.+.+.+.
T Consensus 177 ~a~~~f~~~--~~~W~~l~~~g~~lL~~g 203 (350)
T 3ren_A 177 PTMKLLSQV--DKKWEGIYEKSNSIIENG 203 (350)
T ss_dssp HHHHHHHHH--CTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHh--cchHHHHHHHHHHHHHhC
Confidence 667777777 477888888888777773
No 374
>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}
Probab=50.46 E-value=41 Score=30.19 Aligned_cols=66 Identities=6% Similarity=-0.211 Sum_probs=47.4
Q ss_pred HHHHHHHhhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcE
Q 004888 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~ 207 (725)
.+.++...+.+++++|-|..+||..|...= .++++.+ +++....++. +++.+.| ++. .|+.
T Consensus 29 ~~e~e~fi~~~~v~VVGfF~~~~~~~~~~F------~~~A~~~-~d~~F~~t~~---~~v~~~~--------~v~-~~~v 89 (124)
T 2l4c_A 29 VPAAMEFIAATEVAVIGFFQDLEIPAVPIL------HSMVQKF-PGVSFGISTD---SEVLTHY--------NIT-GNTI 89 (124)
T ss_dssp HHHHHHHHHTSSEEEEEECSCTTSTHHHHH------HHHHHHC-TTSEEEEECC---HHHHHHT--------TCC-SSCE
T ss_pred HHHHHHHHhcCCCEEEEEECCCCChhHHHH------HHHHHhC-CCceEEEECh---HHHHHHc--------CCC-CCeE
Confidence 455666677889999999999999995543 3777877 6676666643 5565554 544 6888
Q ss_pred EEecC
Q 004888 208 VFLSP 212 (725)
Q Consensus 208 vfl~p 212 (725)
+++.+
T Consensus 90 vlfkk 94 (124)
T 2l4c_A 90 CLFRL 94 (124)
T ss_dssp EEEET
T ss_pred EEEEc
Confidence 88876
No 375
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=49.12 E-value=9.7 Score=34.23 Aligned_cols=60 Identities=15% Similarity=0.207 Sum_probs=35.5
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcC-cEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCC
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~-FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~ 215 (725)
+..++.++|.+|++-. ++|+++ .-+..+|+.+.|.-.......++.+ |+|.--+++..|.
T Consensus 6 i~iY~~p~C~~c~ka~----------~~L~~~gi~~~~~di~~~~~~~~eL~~~l~~~----g~~~~~l~n~~~~ 66 (120)
T 3gkx_A 6 TLFLQYPACSTCQKAK----------KWLIENNIEYTNRLIVDDNPTVEELKAWIPLS----GLPVKKFFNTSGV 66 (120)
T ss_dssp CEEEECTTCHHHHHHH----------HHHHHTTCCCEEEETTTTCCCHHHHHHHHHHH----TSCGGGGBCTTSH
T ss_pred EEEEECCCChHHHHHH----------HHHHHcCCceEEEecccCcCCHHHHHHHHHHc----CCCHHHeEeCCCc
Confidence 3457899999999865 345543 2233466655554444444444443 6776666666654
No 376
>1v5d_A Chitosanase; chitosan degradation, hydrolase, glycosil hydrolase, family 8; HET: PIN; 1.50A {Bacillus SP} SCOP: a.102.1.2 PDB: 1v5c_A*
Probab=47.66 E-value=87 Score=33.78 Aligned_cols=124 Identities=9% Similarity=-0.019 Sum_probs=74.3
Q ss_pred HHHHHHHHHhccccCCCeEEEEec-CCCC--CCCCCcchHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHcccc
Q 004888 586 ESAASFIRRHLYDEQTHRLQHSFR-NGPS--KAPGFLDDYAFLISGLLDLYEFGSGT---KWLVWAIELQNTQDELFLDR 659 (725)
Q Consensus 586 ~~~a~~l~~~l~d~~~G~l~~s~~-~g~~--~~~~~leDyA~li~aLL~LYe~Tgd~---~yL~~A~~L~~~~~~~F~D~ 659 (725)
.++..|.++++-...+|.+-+.+. +|.. ....=.++=-+.+.||+.+.+..|+. .|++.|.+|++.+.++-+..
T Consensus 98 D~l~~wt~~~l~~~~~~L~aW~~~~~g~~~~d~n~AtDgDl~IA~ALl~A~~~Wg~~g~~~Y~~~A~~il~~i~~~~~~~ 177 (386)
T 1v5d_A 98 DGLFKTARTFKSSQNPNLMGWVVADSKKAQGHFDSATDGDLDIAYSLLLAHKQWGSNGTVNYLKEAQDMITKGIKASNVT 177 (386)
T ss_dssp HHHHHHHHHTBCSSCTTSBCSEECSSGGGTTTSCCCHHHHHHHHHHHHHHHHHHCSSSSSCHHHHHHHHHHHTHHHHHBC
T ss_pred HHHHHHHHHHhccCCCCCeEEEECCCCCcCCCCCCCCHHHHHHHHHHHHHHHHcCCCchHhHHHHHHHHHHHHHHhcccC
Confidence 456677777776444565555543 2221 12233555578999999999999998 89999999999888776543
Q ss_pred CCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 004888 660 EGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLYL 722 (725)
Q Consensus 660 ~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~t~~~~~~~y~~~A~~~l~~ 722 (725)
.++ ... ..+ . ..+..+...|| =.+-..|-.+++++++ ..|.+.++..++.
T Consensus 178 ~~~-~l~-~g~-~-----~~~~~~~~npS--Y~~p~~l~~f~~~~~~---~~W~~v~~~~~~~ 227 (386)
T 1v5d_A 178 NNN-QLN-LGD-W-----DSKSSLDTRPS--DWMMSHLRAFYEFTGD---KTWLTVINNLYDV 227 (386)
T ss_dssp TTS-SBC-SST-T-----SCTTCCCBCGG--GCCHHHHHHHHHHHCC---THHHHHHHHHHHH
T ss_pred CCC-eee-ecc-c-----CCCCCCeechh--hccHHHHHHHHHhcCC---CcHHHHHHHHHHH
Confidence 322 111 110 0 00011112233 1344556667777775 4788888776655
No 377
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=46.97 E-value=3.7e+02 Score=30.59 Aligned_cols=93 Identities=10% Similarity=0.049 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHH
Q 004888 546 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFL 625 (725)
Q Consensus 546 Nal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~leDyA~l 625 (725)
.++++.||.++.++... +.++ .++|.+.|.++.++| +++|+++ |.|...+.++... ..-+|- +.+
T Consensus 189 ~~~~~~aL~~aa~lA~~------~g~~-----~~~w~~~ad~i~~~i-~~~w~~~-g~f~~~~~~~~~~-~~~lDa-s~L 253 (599)
T 2vn4_A 189 VANQHRALVEGATLAAT------LGQS-----GSAYSSVAPQVLCFL-QRFWVSS-GGYVDSNINTNEG-RTGKDV-NSV 253 (599)
T ss_dssp HHHHHHHHHHHHHHHHH------HTCC-----CHHHHHHHHHHHHHH-GGGEETT-TTEECSEESSCCC-CCCCBT-HHH
T ss_pred HHHHHHHHHHHHHHHHH------cCCC-----HHHHHHHHHHHHHHH-HhhcCCC-CCEEEEecCccCC-CCCcCH-HHH
Confidence 46667788777665332 1112 278999999999999 8999987 7776665322100 111222 333
Q ss_pred HHHHHHHHHH----------cCCHHHHHHHHHHHHHHHH
Q 004888 626 ISGLLDLYEF----------GSGTKWLVWAIELQNTQDE 654 (725)
Q Consensus 626 i~aLL~LYe~----------Tgd~~yL~~A~~L~~~~~~ 654 (725)
+..+. .+.. -.|++.+...+.+.+.+..
T Consensus 254 L~~~~-~f~~~~~~~~~~~~p~dpr~l~Tl~ai~~~L~~ 291 (599)
T 2vn4_A 254 LTSIH-TFDPNLGCDAGTFQPCSDKALSNLKVVVDSFRS 291 (599)
T ss_dssp HHHHH-SCCGGGTTCTTTTCTTSHHHHHHHHHHHHHHHT
T ss_pred hhhhc-cCCccccccccCCCCCCHHHHHHHHHHHHHHHh
Confidence 32221 1211 1577888888877776653
No 378
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=45.80 E-value=72 Score=33.15 Aligned_cols=84 Identities=15% Similarity=0.094 Sum_probs=49.9
Q ss_pred hhhcccCCCCccccchHHHHHHHhh-cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHH
Q 004888 112 YLLQHAHNPVDWFAWGEEAFAEARK-RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKV 190 (725)
Q Consensus 112 yl~~ha~~~V~W~~~~~eAl~~Ak~-e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~ 190 (725)
++.++...++.-... .+.++...+ .+++++|-|+.+||..+... | .+++..+..++....++ .+++.+.
T Consensus 116 ~i~~~~~~~~~~l~~-~~~~~~~~~~~~~~~vv~ff~~~~~~~~~~----~--~~~A~~~~~~~~f~~~~---~~~~~~~ 185 (350)
T 1sji_A 116 FLLDLIEDPVEIINS-KLEVQAFERIEDQIKLIGFFKSEESEYYKA----F--EEAAEHFQPYIKFFATF---DKGVAKK 185 (350)
T ss_dssp HHHTTSSCSEEECCS-HHHHHHHHHCCSSCEEEEECSCTTSHHHHH----H--HHHHHHTTTTSEEEEEC---CHHHHHH
T ss_pred HHHHhcCCcceeccc-hHHHHHHhccCCCcEEEEEECCCCcHHHHH----H--HHHHHhhccCcEEEEEC---CHHHHHH
Confidence 344444444432222 445555555 67788999999988765432 2 25666665555555553 3445544
Q ss_pred HHHHHHHhcCCCCcCcEEEecCCC
Q 004888 191 YMTYVQALYGGGGWPLSVFLSPDL 214 (725)
Q Consensus 191 y~~~~q~~~g~~G~P~~vfl~pdG 214 (725)
| ++. .|+.+++.+.+
T Consensus 186 ~--------~v~-~p~i~~~~~~~ 200 (350)
T 1sji_A 186 L--------SLK-MNEVDFYEPFM 200 (350)
T ss_dssp H--------TCC-TTCEEEECTTC
T ss_pred c--------CCC-CCcEEEEeCCC
Confidence 4 666 89999998743
No 379
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*
Probab=44.78 E-value=1.8e+02 Score=34.49 Aligned_cols=112 Identities=13% Similarity=-0.090 Sum_probs=66.5
Q ss_pred CCCCcchhhhcHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCh-----HHHHHHHHHHHHHHHHhccccCCCeEEEE--
Q 004888 535 PHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDR-----KEYMEVAESAASFIRRHLYDEQTHRLQHS-- 607 (725)
Q Consensus 535 P~lDdKiitsWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~-----~~yl~~A~~~a~~l~~~l~d~~~G~l~~s-- 607 (725)
++.|+- ...+.++.+..+.+||.. |=+.+++.-. ....+..+++.+++.+++ ++ +|...-.
T Consensus 419 ~~~D~~------lWl~~av~~Yi~~TGD~~----~L~e~~p~~~~~~~~~tl~eh~~ra~~~~~~~~-g~-~GLp~~g~g 486 (822)
T 3rrs_A 419 GFNDDP------LWLIAGTAAYIKETGDFS----ILDEPVPFDNEPGSEVPLFEHLTRSFEFTVTHR-GP-HGLPLIGRA 486 (822)
T ss_dssp CBTTHH------HHHHHHHHHHHHHHCCGG----GGGSEECSTTCTTCCEEHHHHHHHHHHHHHHSB-CT-TSSBBCBTC
T ss_pred cccchH------hHHHHHHHHHHHHHCCHH----HHHhhhhhhccccccccHHHHHHHHHHHHHhcC-CC-CCCcccCCC
Confidence 466775 678999999999999943 1111110000 124567788889988765 43 4432211
Q ss_pred -ecCCCCC------C--------C---CCc---chH---HHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHccc
Q 004888 608 -FRNGPSK------A--------P---GFL---DDY---AFLISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLD 658 (725)
Q Consensus 608 -~~~g~~~------~--------~---~~l---eDy---A~li~aLL~LYe~Tgd~----~yL~~A~~L~~~~~~~F~D 658 (725)
+.|+... . + +.- +-. ..++..+.++.+..|++ .|.+.|++|.+.+.++|||
T Consensus 487 DWnD~ln~~~~~~~vg~~~~~~~p~~~~~Gesv~~~al~y~AL~~~a~lA~~~G~~~~A~~~~~~A~~lk~a~~~~~Wd 565 (822)
T 3rrs_A 487 DWNDCLNLNCFSTTPGESFQTTENQAGGVAESTFIAAQFVLYGEQYAELAARRGLADVADRARGHVAEMRDALLTDGWD 565 (822)
T ss_dssp SSSTTCCTTCCCCSTTCCTTTCCSSCCCCCEEHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTBC
T ss_pred cchhhcccccccccccccccccccccCCccccHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHhccC
Confidence 2222110 0 0 111 122 33455666777778885 5889999999999999998
No 380
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=44.78 E-value=16 Score=32.90 Aligned_cols=62 Identities=11% Similarity=0.028 Sum_probs=37.6
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcC-cEEEEEcCCCCcchHHHHHHHHHHhcCCCCc-CcEEEecCCCCcc
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGGGGW-PLSVFLSPDLKPL 217 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~-FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~-P~~vfl~pdG~~i 217 (725)
+..++.++|.+|++-. ++|+++ .-+..+|+.+.|.-.......++. .|+ |.--+++..|...
T Consensus 7 i~iY~~p~C~~c~ka~----------~~L~~~gi~~~~~di~~~~~~~~eL~~~l~~----~g~~~~~~l~n~~~~~~ 70 (121)
T 3rdw_A 7 VTIYHNPRCSKSRETL----------ALVEQQGITPQVVLYLETPPSVDKLKELLQQ----LGFSDARQLMRTKEDLY 70 (121)
T ss_dssp CEEECCTTCHHHHHHH----------HHHHTTTCCCEEECTTTSCCCHHHHHHHHHH----TTCSSGGGGBCTTSHHH
T ss_pred EEEEECCCCHHHHHHH----------HHHHHcCCCcEEEeeccCCCcHHHHHHHHHh----cCCcCHHHHhcCCChhh
Confidence 4457899999999865 455543 223356776655444444444444 377 7655677776543
No 381
>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8
Probab=44.70 E-value=1.3e+02 Score=33.52 Aligned_cols=152 Identities=13% Similarity=0.118 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecC-------------CCC
Q 004888 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN-------------GPS 613 (725)
Q Consensus 547 al~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~-------------g~~ 613 (725)
+..|.++...++.+||.. | + .+.|.++.+.+++++.++..++...+.|.--|. |.+
T Consensus 183 a~~L~la~~Yy~~TgD~~----~---f----~~~w~~av~~il~~l~~eq~~~~~~~~Y~F~r~t~~~~dtl~~~G~G~p 251 (489)
T 2p0v_A 183 CYPIRLAYHYWKTTGDAS----V---F----SDEWLQAIANVLKTFKEQQRKDDAKGPYRFQRKTERALDTMTNDGWGNP 251 (489)
T ss_dssp HHHHHHHHHHHHHHCCCT----T---S----SHHHHHHHHHHHHHHHHTTCSSCSSCSCCCCCCBSCGGGSCHHHHTCSC
T ss_pred HHHHHHHHHHHHHhCCch----h---h----HHHHHHHHHHHHHHHHHHhcccCCCCCceEeecCCCcccccccCCCCCc
Confidence 888999999999999832 1 1 368999999999999887665420011111010 111
Q ss_pred -----------------CC-CCCcchHHHHHHHHHHHHHH---cC-CH----HHHHHHHHHHHHHHHHccccC--CCc-c
Q 004888 614 -----------------KA-PGFLDDYAFLISGLLDLYEF---GS-GT----KWLVWAIELQNTQDELFLDRE--GGG-Y 664 (725)
Q Consensus 614 -----------------~~-~~~leDyA~li~aLL~LYe~---Tg-d~----~yL~~A~~L~~~~~~~F~D~~--~Gg-y 664 (725)
.. .=+....+++..+|-.+.++ .+ +. +|.+.|.++-+.+.++.++.+ .|. |
T Consensus 252 v~~tGLi~S~fRPSDDa~~yg~~ipSN~~a~v~L~~aaeia~~v~~d~~la~~~~~lA~eI~~gI~~~gv~~~p~~G~if 331 (489)
T 2p0v_A 252 VKPVGLIASAFRPSDDATTFQFLVPSNFFAVTSLRKAAEILNTVNRKPALAKECTALADEVEKALKKYAVCNHPKYGKIY 331 (489)
T ss_dssp CCCSSCCCCSBCTTSCBCSSSEEHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHSEEEETTTEEEE
T ss_pred cCCCCceeCCCCCCCcchhcCcchHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCEecCCCCccEE
Confidence 00 11122446776676665543 33 43 578888888888888888764 342 3
Q ss_pred -cccCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 004888 665 -FNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLY 721 (725)
Q Consensus 665 -f~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL~~~t~~~~~~~y~~~A~~~l~ 721 (725)
|...+ .+..+ ...|.-.||--|+-. |+-+-.+ ++.|+...+.++.
T Consensus 332 AyEVDG-~G~~~----~mDDanvpSLLslPy-----lG~~~~d--Dpiy~nTr~~IlS 377 (489)
T 2p0v_A 332 AFEVDG-FGNQL----LMDDANVPSLIALPY-----LGDVKVT--DPIYQNTRKFVWS 377 (489)
T ss_dssp CSEECS-SSCEE----CCCCSSSSCSTTHHH-----HTSSCTT--CHHHHHHHHHHTS
T ss_pred EEEecC-CCCcc----cCCCCCccHHHHHHH-----hCCCCCC--CHHHHHHHHHHHh
Confidence 33322 12211 112334476554432 2222222 4778777666653
No 382
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=44.66 E-value=97 Score=35.49 Aligned_cols=53 Identities=21% Similarity=0.357 Sum_probs=36.9
Q ss_pred CCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCce
Q 004888 357 VGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEI 423 (725)
Q Consensus 357 v~GGF~RYs~D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~Ggf 423 (725)
-+|||+. .|.+. -.|..+..+.++..+ +.+.....++++++||++ .+.++|||
T Consensus 481 ~DGsw~g-----~wg~~----~~y~Ta~~l~aL~~~----g~~~~~~~i~rav~~L~s-~Q~~DGgW 533 (631)
T 2sqc_A 481 PDGSWFG-----RWGVN----YLYGTGAVVSALKAV----GIDTREPYIQKALDWVEQ-HQNPDGGW 533 (631)
T ss_dssp TTSCCCC-----SSBSS----HHHHHHHHHHHHHHT----TCCTTSHHHHHHHHHHHH-TCCTTSCC
T ss_pred CCCCCCC-----CCCCC----chHHHHHHHHHHHHh----CCcccHHHHHHHHHHHHH-hCcCCCCc
Confidence 4688863 56554 357788888777654 333345678899999998 56788987
No 383
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=43.24 E-value=2e+02 Score=34.10 Aligned_cols=112 Identities=12% Similarity=-0.050 Sum_probs=65.6
Q ss_pred CCCCcchhhhcHHHHHHHHHHHHHHhhhhhhhhcccCCCCCC-Ch----HHHHHHHHHHHHHHHHhccccCCCeEEEE--
Q 004888 535 PHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGS-DR----KEYMEVAESAASFIRRHLYDEQTHRLQHS-- 607 (725)
Q Consensus 535 P~lDdKiitsWNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~-~~----~~yl~~A~~~a~~l~~~l~d~~~G~l~~s-- 607 (725)
++.|+- ...|.++.+..+.+||.. |=+.+++. +. ....+..++..+++.+++ ++ +|.....
T Consensus 412 ~~~D~~------lW~i~av~~Y~~~TGD~~----~L~e~~p~~~~~~~~~tl~eh~~ra~~~~~~~~-g~-~GL~~~g~~ 479 (811)
T 3qde_A 412 NFNDDP------LWLILATAAYIKETGDYS----ILKEQVPFNNDPSKADTMFEHLTRSFYHVVNNL-GP-HGLPLIGRA 479 (811)
T ss_dssp CBTTHH------HHHHHHHHHHHHHHCCGG----GGGSEEEETTEEEEEEEHHHHHHHHHHHHHTCB-CT-TSSBBCBTC
T ss_pred Ccccch------hHHHHHHHHHHHHHCCHH----HHHhhhhhhcCCcccccHHHHHHHHHHHHHhcC-CC-CCCcccccC
Confidence 466775 678999999999999942 11000000 00 124567777888888665 43 4433221
Q ss_pred -ecCCCCC------CC-----------CC---cchH---HHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHccc
Q 004888 608 -FRNGPSK------AP-----------GF---LDDY---AFLISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLD 658 (725)
Q Consensus 608 -~~~g~~~------~~-----------~~---leDy---A~li~aLL~LYe~Tgd~----~yL~~A~~L~~~~~~~F~D 658 (725)
+.|+... +. +. .+-. ..++..+.++.+..|++ .|.+.|++|.+.+.++|||
T Consensus 480 DWnD~ln~~~~~~~vg~~~~~vtp~~~~~gesv~~~al~y~AL~~~a~lA~~lGd~~~A~~~~~~A~~lk~a~~~~~Wd 558 (811)
T 3qde_A 480 DWNDCLNLNCFSTVPDESFQTTTSKDGKVAESVMIAGMFVFIGKDYVKLCEYMGLEEEARKAQQHIDAMKEAILKYGYD 558 (811)
T ss_dssp SSSTTCCSSCCCCCTTSCTTTSCCCCCSSCEEHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSBC
T ss_pred CchhhccccccccccCccccccccccCCcccCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccC
Confidence 2222110 00 11 1122 33455566777778884 5889999999999999998
No 384
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*
Probab=42.41 E-value=91 Score=37.09 Aligned_cols=59 Identities=20% Similarity=0.204 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEec--CCCC--CC-CCCcchHHHHHHHHHHHHHHcCCHHHHH
Q 004888 583 EVAESAASFIRRHLYDEQTHRLQHSFR--NGPS--KA-PGFLDDYAFLISGLLDLYEFGSGTKWLV 643 (725)
Q Consensus 583 ~~A~~~a~~l~~~l~d~~~G~l~~s~~--~g~~--~~-~~~leDyA~li~aLL~LYe~Tgd~~yL~ 643 (725)
+.|++....+..+... +|.+.|.+. .+.. .. ..+.||..+++.++.+.++.|||..+|+
T Consensus 382 e~ar~~il~~~~~Q~~--dG~v~h~~~p~~~~g~~~~~~~~~D~~lWl~~av~~Yi~~TGD~~~L~ 445 (822)
T 3rrs_A 382 ERARERIIDIASTQFA--DGSAYHQYQPLTKRGNNDIGSGFNDDPLWLIAGTAAYIKETGDFSILD 445 (822)
T ss_dssp HHHHHHHHHHHTTCCT--TSCCCSEEETTTTEECTTTCSCBTTHHHHHHHHHHHHHHHHCCGGGGG
T ss_pred HHHHHHHHHHHHhhcc--cCcccceecCcCCCCccCCCCcccchHhHHHHHHHHHHHHHCCHHHHH
Confidence 3555555555555543 577777754 2221 11 3578899999999999999999999985
No 385
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=42.15 E-value=70 Score=33.71 Aligned_cols=82 Identities=12% Similarity=0.007 Sum_probs=51.0
Q ss_pred hhhcccCCCCccccchHHHHHHHhh-cCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHH
Q 004888 112 YLLQHAHNPVDWFAWGEEAFAEARK-RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKV 190 (725)
Q Consensus 112 yl~~ha~~~V~W~~~~~eAl~~Ak~-e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~ 190 (725)
|++++...+|.-... .+.++.-.+ ++++++|-|+.+||..+...= .+++..+..++....+. .+++.+.
T Consensus 118 ~i~~~~~~~v~~i~~-~~~~~~~~~~~~~~~vv~ff~~~~~~~~~~f------~~~A~~~~~~~~F~~~~---~~~~~~~ 187 (367)
T 3us3_A 118 FLLDVLEDPVELIEG-ERELQAFENIEDEIKLIGYFKNKDSEHYKAF------KEAAEEFHPYIPFFATF---DSKVAKK 187 (367)
T ss_dssp HHHHHHSCSEEECCS-HHHHHHHHHCCSSCEEEEECSCTTCHHHHHH------HHHHHHHTTTSCEEEEC---CHHHHHH
T ss_pred HHHHhcCCCcEEcCC-HHHHHHHhccCCCcEEEEEECCCCchHHHHH------HHHHHhhcCCcEEEEEC---CHHHHHH
Confidence 555666666654433 444555555 678899999999887655332 25777776555445443 2445554
Q ss_pred HHHHHHHhcCCCCcCcEEEecC
Q 004888 191 YMTYVQALYGGGGWPLSVFLSP 212 (725)
Q Consensus 191 y~~~~q~~~g~~G~P~~vfl~p 212 (725)
| ++.+ |+.+++.+
T Consensus 188 ~--------~v~~-p~i~lf~~ 200 (367)
T 3us3_A 188 L--------TLKL-NEIDFYEA 200 (367)
T ss_dssp H--------TCCT-TCEEEECT
T ss_pred c--------CCCC-CeEEEEcC
Confidence 4 5554 99998877
No 386
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=41.93 E-value=3.2e+02 Score=33.27 Aligned_cols=41 Identities=20% Similarity=0.122 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeee
Q 004888 379 LYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSA 426 (725)
Q Consensus 379 LyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~Ggfysa 426 (725)
+-|.++.+.++..+ |+ .+.|++.++||.+....++|.+..-
T Consensus 331 ~RDaa~t~~all~~----G~---~e~A~~~l~~L~~~Q~~~~G~~~~~ 371 (1020)
T 1ulv_A 331 ARDMYQSVTALLAA----GD---EEAAARGVEWLFTYQQQPDGHFPQT 371 (1020)
T ss_dssp HHHHHHHHHHHHHH----TC---HHHHHHHHHHHHHHTCCTTSCCCSC
T ss_pred cchHHHHHHHHHHc----CC---HHHHHHHHHHHHHHhcCCCCCeeeE
Confidence 46888888877653 33 4789999999997543667877653
No 387
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=41.69 E-value=1.1e+02 Score=36.40 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEec--CCCC--CC-CCCcchHHHHHHHHHHHHHHcCCHHHHH
Q 004888 583 EVAESAASFIRRHLYDEQTHRLQHSFR--NGPS--KA-PGFLDDYAFLISGLLDLYEFGSGTKWLV 643 (725)
Q Consensus 583 ~~A~~~a~~l~~~l~d~~~G~l~~s~~--~g~~--~~-~~~leDyA~li~aLL~LYe~Tgd~~yL~ 643 (725)
+.|++....+..+... +|.+.|.+. .+.. .. ..+.||..+++.++.+.++.|||..+|+
T Consensus 375 ~~~r~~il~~~~~Q~~--dG~~~h~~~p~~~~g~~~~~~~~~D~~lW~i~av~~Y~~~TGD~~~L~ 438 (811)
T 3qde_A 375 ERARERLLDLAATQLE--DGSAYHQYQPLTKKGNNEIGSNFNDDPLWLILATAAYIKETGDYSILK 438 (811)
T ss_dssp HHHHHHHHHHHTTBCT--TSCBCSEECTTTCCEECTTCCCBTTHHHHHHHHHHHHHHHHCCGGGGG
T ss_pred HHHHHHHHHHHhhccc--CCCccceecCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHCCHHHHH
Confidence 3555555555555543 577777764 2321 12 3578899999999999999999999985
No 388
>1wu4_A Xylanase Y; (alpla/alpha)6 barrel, glycoside hydrolase family 8, hydrola; 1.35A {Bacillus halodurans} SCOP: a.102.1.2 PDB: 1wu5_A* 3a3v_A 2drr_A 2drs_A 1wu6_A* 2drq_A 2dro_A
Probab=39.91 E-value=1.1e+02 Score=33.29 Aligned_cols=131 Identities=11% Similarity=0.053 Sum_probs=74.0
Q ss_pred HHHHHHHHHhccccC---CCeEEEEec-CCCC-CCCCCcchHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHH
Q 004888 586 ESAASFIRRHLYDEQ---THRLQHSFR-NGPS-KAPGFLDDYAFLISGLLDLYEFGS-----GTKWLVWAIELQNTQDEL 655 (725)
Q Consensus 586 ~~~a~~l~~~l~d~~---~G~l~~s~~-~g~~-~~~~~leDyA~li~aLL~LYe~Tg-----d~~yL~~A~~L~~~~~~~ 655 (725)
.++..|.+++|..++ +|.+-+.+. +|.. ....=.++=-+.+.||+.+.+..| +..|++.|.+|++.+.++
T Consensus 89 D~l~~wt~~~l~~~~~~~~~L~aW~~~~~~~~~~~n~AtDgDl~IA~ALl~A~~~Wg~~~g~~~~Y~~~A~~il~~i~~~ 168 (396)
T 1wu4_A 89 DRIWNWTMKNMYMTEGVHAGYFAWSCQPDGTKNSWGPAPDGEEYFALALFFASHRWGDGDEQPFNYSEQARKLLHTCVHN 168 (396)
T ss_dssp HHHHHHHHHHTBCCSSTTTTSBCSEECTTSCBSCSCCCHHHHHHHHHHHHHHHHHHCCCSSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCCcccCCCceEEECCCCCcCCCCCCCHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHh
Confidence 467778888876554 455555543 3322 122334555689999999999999 689999999999999887
Q ss_pred ccccCCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHHH-HHhhCCCCchHHHHHHHHHHHHh
Q 004888 656 FLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRL-ASIVAGSKSDYYRQNAEHSLYLR 723 (725)
Q Consensus 656 F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL-~~~t~~~~~~~y~~~A~~~l~~~ 723 (725)
-+... |+-...++. .+ +...+..+...||=-. -.+.++ +.+.....++.|.+.++..++.+
T Consensus 169 ~~~~~-~~~~l~p~~--~~-~~f~~~~~~~npSY~~---pa~~~~fa~~~~~~~~~~W~~~~~~~~~lL 230 (396)
T 1wu4_A 169 GEGGP-GHPMWNRDN--KL-IKFIPEVEFSDPSYHL---PHFYELFSLWANEEDRVFWKEAAEASREYL 230 (396)
T ss_dssp TSSSS-CCCSBCTTT--CC-BCSSTTCSEECGGGCC---HHHHHHHHHHSCGGGHHHHHHHHHHHHHHH
T ss_pred hccCC-CcceecCCC--ce-eeecCCCCeeChhhcc---HHHHHHHHHhcccccChhHHHHHHHHHHHH
Confidence 65432 221111111 00 1111111222344322 255565 33211111256888888877665
No 389
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=39.41 E-value=3e+02 Score=27.41 Aligned_cols=120 Identities=9% Similarity=-0.017 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCh-hHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCeEE
Q 004888 284 ALRLCAEQLSKSYDSRFGGFGSAPKFPRP-VEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFH 362 (725)
Q Consensus 284 ~~~~~~~~l~~~~D~~~GGfg~apKFP~~-~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~ma~gGi~D~v~GGF~ 362 (725)
.+++.++.+.. |-...|||+.-+.=|.. ..-.+.+.......... ..++. ++.+.++=+.. -.-+-+|+|.
T Consensus 39 ~i~~g~~~~l~-~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~--~v~~~---~i~~a~~~L~~--~~Q~~dG~f~ 110 (277)
T 1qqf_A 39 LIKKGYTQQLA-FKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLI--AIDSQ---VLCGAVKWLIL--EKQKPDGVFQ 110 (277)
T ss_dssp HHHHHHHHHHT-TBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTS--CCCHH---HHHHHHHHHHH--HHBCTTSCBC
T ss_pred HHHHHHHHHHH-hcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcC--CCCHH---HHHHHHHHHHH--hccCCCCCcc
Confidence 34555555653 46668999876554442 22223333222111111 11223 33444443321 0112457776
Q ss_pred EEecCCCCCCCCCc----------hhHHHHHHHHHHHHHHHHcc--CChHHHHHHHHHHHHHHHhc
Q 004888 363 RYSVDERWHVPHFE----------KMLYDQGQLANVYLDAFSLT--KDVFYSYICRDILDYLRRDM 416 (725)
Q Consensus 363 RYs~D~~W~vPHFE----------KMLyDNA~Ll~~ya~Ay~~t--~d~~y~~vA~~~~~fl~~~m 416 (725)
. .|.+.|-+ .-++-.|..+.++.++.... +-+.....++++++||.+..
T Consensus 111 ~-----~~~~~~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~ 171 (277)
T 1qqf_A 111 E-----DGPVIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASY 171 (277)
T ss_dssp C-----SSCCSCGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHH
T ss_pred C-----CccccchhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHh
Confidence 3 56666532 22566889999998886653 33456778899999999865
No 390
>4gl3_A Putative glucoamylase; PF10091 family protein, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 2.01A {Bacteroides uniformis}
Probab=39.27 E-value=80 Score=34.61 Aligned_cols=96 Identities=15% Similarity=0.146 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHH-HhccccCCCeEEEEec--CCCCCCCCC-----
Q 004888 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIR-RHLYDEQTHRLQHSFR--NGPSKAPGF----- 618 (725)
Q Consensus 547 al~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~-~~l~d~~~G~l~~s~~--~g~~~~~~~----- 618 (725)
|+.+.|++-|.+- | . +...+.++..+++.+++. +.+ +.-.|-|+|-+. .|++..+..
T Consensus 58 Gf~L~a~~va~e~-G-----------~--I~~~e~~~R~~~tL~~l~~~~~-~r~~G~fyhwyd~~Tg~~l~~~~~d~~v 122 (424)
T 4gl3_A 58 GFGVMAIIVGIER-G-----------F--VTREQGAERMLKIVRFLSDKNT-DSYHGMWAHWMNGKTGKTIPFSRKDDGA 122 (424)
T ss_dssp HHHHHHHHHHHHT-T-----------S--SCHHHHHHHHHHHHHHHHCTTS-CCBTTBCCSEEETTTCCEECSBTTBCSE
T ss_pred HHHHHHHHHHHHc-C-----------C--CCHHHHHHHHHHHHHHHhhccc-cccCCccccceeCCCCCCCCCcCCCCcc
Confidence 7777777777652 1 0 123678899999999985 334 223577777653 344433332
Q ss_pred -cchHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHcc
Q 004888 619 -LDDYAFLISGLLDLYEFGSG-----TKWLVWAIELQNTQDELFL 657 (725)
Q Consensus 619 -leDyA~li~aLL~LYe~Tgd-----~~yL~~A~~L~~~~~~~F~ 657 (725)
+=|-++++.|||-+-+...+ ++-.++|.+|++.++=.|+
T Consensus 123 StVDtg~L~~gLl~~~~yf~~~~~~e~~l~~~a~~L~~~~dw~~~ 167 (424)
T 4gl3_A 123 DIVESAFMFEGLLAAHQYFTKDNPTENRIRGIINNLWRQAEWNFF 167 (424)
T ss_dssp EHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHCCGGGG
T ss_pred cHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHcCCHHHH
Confidence 23889999999999998766 4566788888877765554
No 391
>4fnv_A Heparinase III protein, heparitin sulfate lyase; toroid fold, -sandwich fold, heparan sulfate degradation; 1.60A {Bacteroides thetaiotaomicron}
Probab=37.84 E-value=5.4e+02 Score=29.84 Aligned_cols=92 Identities=8% Similarity=-0.087 Sum_probs=53.4
Q ss_pred cHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHH
Q 004888 545 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAF 624 (725)
Q Consensus 545 WNal~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~leDyA~ 624 (725)
|--..+.||+.++.++++-. +.++|++.|.+..+.-.+....++ |+. ...-+.-+.+
T Consensus 261 h~l~~~~aL~~agl~~pe~~------------~~~~w~~~A~~~L~~el~~Qi~~D-G~~----------~E~Sp~Yh~~ 317 (702)
T 4fnv_A 261 ILISQANALATAGTLMPEFK------------NAEKWMNTGYQILSEEVQNQIMSD-GWH----------KEMSLHYHIG 317 (702)
T ss_dssp HHHHHHHHHHHHHHHCTTBT------------THHHHHHHHHHHHHHHHHHSBCTT-SCB----------TTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCc------------cHHHHHHHHHHHHHHHHHhhcCCC-Ccc----------ccCCHHHHHH
Confidence 43444668888998887510 126899999988776655555553 432 1223344556
Q ss_pred HHHHHHHH---HHHcCC-----HHHHHHHHHHHHHHHHHccccC
Q 004888 625 LISGLLDL---YEFGSG-----TKWLVWAIELQNTQDELFLDRE 660 (725)
Q Consensus 625 li~aLL~L---Ye~Tgd-----~~yL~~A~~L~~~~~~~F~D~~ 660 (725)
++..|+.+ .+..|- +.+.+..+++...+.. +..++
T Consensus 318 vL~~ll~~~~la~~~g~~~~~p~~~~~~L~km~~~l~~-l~~PD 360 (702)
T 4fnv_A 318 IVADFYEAMKLAEANQLSSKLPSDFTEPLRKAAEVVMY-FTYPN 360 (702)
T ss_dssp HHHHHHHHHHHHHHTTCGGGSCTTTTHHHHHHHHHHHH-TSCGG
T ss_pred HHHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHHHH-HcCCC
Confidence 66665544 444443 3566777777766644 43444
No 392
>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}
Probab=37.82 E-value=1.3e+02 Score=29.59 Aligned_cols=69 Identities=12% Similarity=-0.021 Sum_probs=39.4
Q ss_pred cCCcEEEEEec-cCChhhH--hhhhhccCCHHHHHHHhcC---cEEEEEcCCCCcchHHHHHHHHHHhcCC----CCcCc
Q 004888 137 RDVPIFLSIGY-STCHWCH--VMEVESFEDEGVAKLLNDW---FVSIKVDREERPDVDKVYMTYVQALYGG----GGWPL 206 (725)
Q Consensus 137 e~KpI~l~~g~-~wC~~C~--~Me~e~f~d~eVa~~ln~~---FV~VkvD~ee~pd~~~~y~~~~q~~~g~----~G~P~ 206 (725)
.++|++|-|.. +.+.... .--...+ .+|++.+... +..+.+|.++.+.+.+. +|. .+.|.
T Consensus 128 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~vA~~~~~k~~~~~F~~~d~~~~~~~~~~--------fgl~~~~~~~P~ 197 (252)
T 2h8l_A 128 QGKDLLIAYYDVDYEKNAKGSNYWRNRV--MMVAKKFLDAGHKLNFAVASRKTFSHELSD--------FGLESTAGEIPV 197 (252)
T ss_dssp SSSSEEEEEECCBTTTBHHHHHHHHHHH--HHHHHHHHHTTCCCEEEEEETTTTHHHHGG--------GTCCCCSCSSCE
T ss_pred cCCCeEEEEeecchhhcchhHHHHHHHH--HHHHHHccccCceEEEEEEchHHHHHHHHH--------cCCCCccCCCCE
Confidence 56787776654 3322111 1111122 2477777655 89999998765533221 255 36899
Q ss_pred EEEecCCCC
Q 004888 207 SVFLSPDLK 215 (725)
Q Consensus 207 ~vfl~pdG~ 215 (725)
.++++.+++
T Consensus 198 v~i~~~~~~ 206 (252)
T 2h8l_A 198 VAIRTAKGE 206 (252)
T ss_dssp EEEECTTSC
T ss_pred EEEEeCcCc
Confidence 999987654
No 393
>1h12_A Endo-1,4-beta-xylanase; hydrolase, xylan degradation, psychrophilic, cold adaptation, temperature, glycosyl hydrolase, family 8; HET: XYP XYS; 1.2A {Pseudoalteromonas haloplanktis} SCOP: a.102.1.2 PDB: 1h13_A 1xw2_A 1xwq_A* 1h14_A 1xwt_A 2b4f_A* 2a8z_A*
Probab=37.08 E-value=43 Score=36.50 Aligned_cols=89 Identities=13% Similarity=0.108 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 004888 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 626 (725)
Q Consensus 547 al~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~~~~~leDyA~li 626 (725)
-.++.||+.|++.-++.+ ..+|.+.|.++++.|.++- +.++.+. +..+.. ..--+ ++.+
T Consensus 147 l~IA~ALl~A~~~Wg~~g-------------~~~Y~~~A~~il~~I~~~~--~~~~~~~--f~p~~~-~~~np---SY~~ 205 (405)
T 1h12_A 147 EYFAFALLNASARWGNSG-------------EFNYYNDAITMLNTIKNKL--MENQIIR--FSPYID-NLTDP---SYHI 205 (405)
T ss_dssp HHHHHHHHHHHHHHCSSS-------------SCCHHHHHHHHHHHHHHHS--EETTEEC--SCTTCS-SCBCG---GGCC
T ss_pred HHHHHHHHHHHHHcCCCC-------------chhHHHHHHHHHHHHHHhC--CCCCeeE--EecCCC-CeeCh---hhcC
Confidence 578899999999998521 1579999999999998876 4344332 122221 11112 2334
Q ss_pred HHHHHH-HHHcCC----HHHHHHHHHHHHHHHHHc
Q 004888 627 SGLLDL-YEFGSG----TKWLVWAIELQNTQDELF 656 (725)
Q Consensus 627 ~aLL~L-Ye~Tgd----~~yL~~A~~L~~~~~~~F 656 (725)
-+++++ ++++++ +.|.+.+....+.+.+..
T Consensus 206 pa~~~~fa~~~~~~~~~~~W~~v~~~~~~lL~~~~ 240 (405)
T 1h12_A 206 PAFYDYFANNVTNQADKNYWRQVATKSRTLLKNHF 240 (405)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccCchhHHHHHHHHHHHHHHhc
Confidence 567777 566767 779998888777776544
No 394
>3qxf_A Endoglucanase; cellulase, GH8, cellulose synthesis, cellulose degradation,; 1.85A {Escherichia coli k-12} PDB: 3qxq_A*
Probab=35.95 E-value=39 Score=36.24 Aligned_cols=75 Identities=8% Similarity=0.015 Sum_probs=51.2
Q ss_pred HHHHHHHHHhccccC--CCeEEEEec---CCC---CCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q 004888 586 ESAASFIRRHLYDEQ--THRLQHSFR---NGP---SKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL 657 (725)
Q Consensus 586 ~~~a~~l~~~l~d~~--~G~l~~s~~---~g~---~~~~~~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~ 657 (725)
.++..|.+.++...+ +|.+-+.+. +|. .+...=.|+=-+.+.||+.+.+..|++.|+..|..|++.+.++-+
T Consensus 53 D~Lw~wt~~~l~~~d~~~~L~aW~w~~~~~g~~~v~D~nsAtDGDl~IA~ALl~A~~~Wg~~~Y~~~A~~il~~I~~~~v 132 (355)
T 3qxf_A 53 DNILDWTQNNLAQGSLKERLPAWLWGKKENSKWEVLDSNSASDGDVWMAWSLLEAGRLWKEQRYTDIGSALLKRIAREEV 132 (355)
T ss_dssp HHHHHHHHHHHSTTCTTTSCCCSEEEECTTSCEEEEECSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHE
T ss_pred HHHHHHHHHHhccCCcccCCceEEEcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence 456677777876543 243322322 232 122233455578999999999999999999999999999988766
Q ss_pred ccC
Q 004888 658 DRE 660 (725)
Q Consensus 658 D~~ 660 (725)
...
T Consensus 133 ~~~ 135 (355)
T 3qxf_A 133 VTV 135 (355)
T ss_dssp EEE
T ss_pred ccC
Confidence 443
No 395
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=34.64 E-value=1.1e+02 Score=34.93 Aligned_cols=94 Identities=12% Similarity=-0.040 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCC---------CCC
Q 004888 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK---------APG 617 (725)
Q Consensus 547 al~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g~~~---------~~~ 617 (725)
++++.||..++... + -....++.+||++...+. .|.+...++++.+. ..+
T Consensus 315 a~~l~AL~~~G~~~-~-------------------~~~~~ka~~~L~~~q~~~-~g~~~~~~~~~s~GgW~f~~~~~~~p 373 (631)
T 2sqc_A 315 GLAVLALRAAGLPA-D-------------------HDRLVKAGEWLLDRQITV-PGDWAVKRPNLKPGGFAFQFDNVYYP 373 (631)
T ss_dssp HHHHHHHHHTTCCT-T-------------------CHHHHHHHHHHHHTCCCS-CCGGGGTCTTSCCCCBCSSSSCTTCC
T ss_pred HHHHHHHHHcCCCC-C-------------------CHHHHHHHHHHHHhcCCC-CCChhhhcCCCCCCCCccccCCCCCC
Confidence 67788887775311 1 135667778888776543 23221112222221 124
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcc
Q 004888 618 FLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGY 664 (725)
Q Consensus 618 ~leDyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggy 664 (725)
-.+|-|+++.+|+.+.. ..+..+.+...+..+.+...- .+ +|+|
T Consensus 374 ~v~dTA~al~AL~~~~~-~~~~~~~~~l~~a~~wLls~Q-~~-dGgf 417 (631)
T 2sqc_A 374 DVCDTAVVVWALNTLRL-PDERRRRDAMTKGFRWIVGMQ-SS-NGGW 417 (631)
T ss_dssp BHHHHHHHHHHHTTCCC-SCHHHHHHHHHHHHHHHHHTC-CT-TSCB
T ss_pred chHHHHHHHHHHHHcCC-CccchhHHHHHHHHHHHHhhc-CC-CCCC
Confidence 46788999999988764 333445566666666666543 22 3665
No 396
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=34.50 E-value=1e+02 Score=33.08 Aligned_cols=22 Identities=14% Similarity=0.309 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhccCCCCceeee
Q 004888 404 ICRDILDYLRRDMIGPGGEIFSA 426 (725)
Q Consensus 404 vA~~~~~fl~~~m~~~~Ggfysa 426 (725)
..+++++||++ .+..+|||-.+
T Consensus 192 ~v~ka~~fL~s-cQn~DGGfGe~ 213 (377)
T 1n4q_B 192 DMKKAISYIRR-SMSYDNGLAQG 213 (377)
T ss_dssp CHHHHHHHHHH-TBCTTSSBBSS
T ss_pred HHHHHHHHHHH-hcCCCCCCCCC
Confidence 46889999997 66789999543
No 397
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=34.32 E-value=70 Score=34.89 Aligned_cols=64 Identities=23% Similarity=0.276 Sum_probs=43.3
Q ss_pred HHHHHhh----hhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHH-
Q 004888 452 EVEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLF- 526 (725)
Q Consensus 452 Ei~~~lg----~~~~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~e~~~~~l~~~r~kL~- 526 (725)
++..+|. .+..++.-.|++..+.. .+.+++|..+|++.+.+++++..+++||.
T Consensus 353 ~L~~aL~~L~~rer~Vl~lr~~L~~~e~----------------------~Tl~EIA~~lgiS~erVrqi~~rAl~kLR~ 410 (423)
T 2a6h_F 353 ELEKALSKLSEREAMVLKLRKGLIDGRE----------------------HTLEEVGAFFGVTRERIRQIENKALRKLKY 410 (423)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHTTCC---------------------------CHHHHSSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHhccCCCCC----------------------CCHHHHHHHHCcCHHHHHHHHHHHHHHHHh
Confidence 3455554 24667788888853211 13468999999999999999999999998
Q ss_pred h-hhccCCCCCC
Q 004888 527 D-VRSKRPRPHL 537 (725)
Q Consensus 527 ~-~R~~R~~P~l 537 (725)
. .|.++.+.++
T Consensus 411 ~~~~~~~l~~~l 422 (423)
T 2a6h_F 411 HESRTRKLRDFL 422 (423)
T ss_dssp HHHHTTSSSSCC
T ss_pred hhhhhHHHHHhh
Confidence 3 4445555544
No 398
>2jg0_A Periplasmic trehalase; family 37, hydrolase, inhibitor, glycoside hydrolase, glycosidase, 1-thiatrehazolin; HET: TTZ; 1.50A {Escherichia coli} SCOP: a.102.1.9 PDB: 2jf4_A* 2jjb_A* 2wyn_A*
Probab=34.05 E-value=43 Score=37.78 Aligned_cols=50 Identities=10% Similarity=0.094 Sum_probs=37.6
Q ss_pred cchHHHHHHHH---HHHHHHcCCH----HHHHHHHHHHHHHHHHccccCCCcccccC
Q 004888 619 LDDYAFLISGL---LDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNTT 668 (725)
Q Consensus 619 leDyA~li~aL---L~LYe~Tgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~ 668 (725)
.|-+|++..++ .++++..|++ +|.+.|.++.+.+.+.|||++.|.|++..
T Consensus 305 VDlnA~ly~a~~~la~lA~~lG~~~~a~~~~~~A~~lk~ai~~~fWdee~G~y~D~~ 361 (535)
T 2jg0_A 305 VDLNSLMFKMEKILARASKAAGDNAMANQYETLANARQKGIEKYLWNDQQGWYADYD 361 (535)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHSEETTTTEECCEE
T ss_pred hHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcCCCCCEEEEEe
Confidence 34456555444 5566677875 68999999999999999999988887643
No 399
>3cih_A Putative alpha-rhamnosidase; structural genomics, protein structure initiative II, NYSGXRC, (alpha/alpha)6 barrel domain; 2.33A {Bacteroides thetaiotaomicron vpi-5482}
Probab=34.04 E-value=58 Score=38.02 Aligned_cols=55 Identities=13% Similarity=0.282 Sum_probs=39.0
Q ss_pred cHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCC
Q 004888 545 WNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG 611 (725)
Q Consensus 545 WNal~I~---aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g 611 (725)
-|+++.. .+++.++++|+++. .++|.+.|.++.+.+.+++||++.|.+...+.+|
T Consensus 456 ~~a~~y~al~~~a~lA~~lG~~~~------------A~~y~~~A~~lk~a~~~~~wd~~~G~y~~~~~~G 513 (739)
T 3cih_A 456 EQVLFCRSLETMALCADLVGDKDG------------QQKYEKLASALKAKLEPTFWNNQKQAFVHNCVDG 513 (739)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHH------------HHHHHHHHHHHHHHHHHHHEETTTTEECSEEETT
T ss_pred HHHHHHHHHHHHHHHHHHcCChHH------------HHHHHHHHHHHHHHHHHhccCcccCeeEeecCCC
Confidence 3555544 56667778886321 2679999999999999999998777765444444
No 400
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=33.78 E-value=47 Score=33.58 Aligned_cols=79 Identities=10% Similarity=0.079 Sum_probs=56.6
Q ss_pred cHHHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHH
Q 004888 334 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLR 413 (725)
Q Consensus 334 ~~~~~~~~~~TL~~ma~gGi~D~v~GGF~RYs~D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~ 413 (725)
..++.+++...++.+.. +-+-+|||.-|..+ +--.+..|..+.+++.|-.... .-.++.+++++||.
T Consensus 33 ~~~~~~~i~~g~~~~l~---~q~~dGgf~~f~~~--------~~s~wlTa~v~~~l~~a~~~~~--v~~~~i~~a~~~L~ 99 (277)
T 1qqf_A 33 RQEALELIKKGYTQQLA---FKQPISAYAAFNNR--------PPSTWLTAYVSRVFSLAANLIA--IDSQVLCGAVKWLI 99 (277)
T ss_dssp HHHHHHHHHHHHHHHHT---TBCTTSCBCSSTTS--------CCCHHHHHHHHHHHHHHTTTSC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---hcCCCCCccccCCC--------CccHHHHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHH
Confidence 35778888888888876 56779999643321 1235678999999999876532 22467789999999
Q ss_pred HhccCCCCceee
Q 004888 414 RDMIGPGGEIFS 425 (725)
Q Consensus 414 ~~m~~~~Ggfys 425 (725)
++.+.++|.|+.
T Consensus 100 ~~~Q~~dG~f~~ 111 (277)
T 1qqf_A 100 LEKQKPDGVFQE 111 (277)
T ss_dssp HHHBCTTSCBCC
T ss_pred HhccCCCCCccC
Confidence 646678898864
No 401
>1h12_A Endo-1,4-beta-xylanase; hydrolase, xylan degradation, psychrophilic, cold adaptation, temperature, glycosyl hydrolase, family 8; HET: XYP XYS; 1.2A {Pseudoalteromonas haloplanktis} SCOP: a.102.1.2 PDB: 1h13_A 1xw2_A 1xwq_A* 1h14_A 1xwt_A 2b4f_A* 2a8z_A*
Probab=33.04 E-value=95 Score=33.77 Aligned_cols=122 Identities=19% Similarity=0.108 Sum_probs=71.2
Q ss_pred HHHHHHHHHhc----cccC---CCeEEEEe--c-CCCC-CCC--CCcchHHHHHHHHHHHHHHcC---CHHHHHHHHHHH
Q 004888 586 ESAASFIRRHL----YDEQ---THRLQHSF--R-NGPS-KAP--GFLDDYAFLISGLLDLYEFGS---GTKWLVWAIELQ 649 (725)
Q Consensus 586 ~~~a~~l~~~l----~d~~---~G~l~~s~--~-~g~~-~~~--~~leDyA~li~aLL~LYe~Tg---d~~yL~~A~~L~ 649 (725)
.++..|.++++ ..++ +|.+-+.+ . +|.. ... .=.++=-+.+.||+.+.+..| +..|++.|..|+
T Consensus 97 D~L~~wtk~~l~~~~~~~~g~~~~l~aW~~g~~~~g~~~d~n~~sAtDgDl~IA~ALl~A~~~Wg~~g~~~Y~~~A~~il 176 (405)
T 1h12_A 97 DNLWRFAKAYQKNPDNHPDAKKQGVYAWKLKLNQNGFVYKVDEGPAPDGEEYFAFALLNASARWGNSGEFNYYNDAITML 176 (405)
T ss_dssp HHHHHHHHHHTBCCTTCSSGGGTTCBEEEEEECTTSCEEEEEEEECHHHHHHHHHHHHHHHHHHCSSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccccCCcccceEEEeccCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Confidence 46777888888 3333 45565555 2 2322 111 223444688999999999999 789999999999
Q ss_pred HHHHHHccccCCCcccccCCCCCccccccccCCCCCCCChHHHHHHHHHHH-HHhhCC-CCchHHHHHHHHHHHHh
Q 004888 650 NTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRL-ASIVAG-SKSDYYRQNAEHSLYLR 723 (725)
Q Consensus 650 ~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k~~~D~a~PS~Nsv~a~~LlrL-~~~t~~-~~~~~y~~~A~~~l~~~ 723 (725)
+.+.++- +.+|..-..+... +...||=-. -.++++ +.++++ .....|.+.++..++.+
T Consensus 177 ~~I~~~~--~~~~~~~f~p~~~-----------~~~npSY~~---pa~~~~fa~~~~~~~~~~~W~~v~~~~~~lL 236 (405)
T 1h12_A 177 NTIKNKL--MENQIIRFSPYID-----------NLTDPSYHI---PAFYDYFANNVTNQADKNYWRQVATKSRTLL 236 (405)
T ss_dssp HHHHHHS--EETTEECSCTTCS-----------SCBCGGGCC---HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC--CCCCeeEEecCCC-----------CeeChhhcC---HHHHHHHHHhcccccCchhHHHHHHHHHHHH
Confidence 9998876 3332211111111 112233322 244454 555543 11145888888877655
No 402
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=32.79 E-value=27 Score=32.71 Aligned_cols=24 Identities=21% Similarity=0.612 Sum_probs=18.7
Q ss_pred hcCCcEEEEEeccCChhhHhhhhh
Q 004888 136 KRDVPIFLSIGYSTCHWCHVMEVE 159 (725)
Q Consensus 136 ~e~KpI~l~~g~~wC~~C~~Me~e 159 (725)
...|..++.|.-..|+||+.++..
T Consensus 9 ~~a~~~i~~f~D~~Cp~C~~~~~~ 32 (186)
T 3bci_A 9 KNGKPLVVVYGDYKCPYCKELDEK 32 (186)
T ss_dssp --CCCEEEEEECTTCHHHHHHHHH
T ss_pred CCCCeEEEEEECCCChhHHHHHHH
Confidence 345677888999999999999853
No 403
>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A*
Probab=32.18 E-value=3e+02 Score=32.11 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=34.6
Q ss_pred HHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE
Q 004888 546 NGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS 607 (725)
Q Consensus 546 Nal~I~---aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s 607 (725)
|+++.. .+++.++.+|+++. .++|.+.|.++.+.+.+++|+++++.+...
T Consensus 505 ~a~~y~al~~~a~la~~lG~~~~------------a~~~~~~A~~lk~~~~~~~w~~~~~~f~~~ 557 (807)
T 1v7w_A 505 SFLHFWALQEFIDLAKFLGKDQD------------VNTYTEMAANVREACETHLWDDEGGWYIRG 557 (807)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHH------------HHHHHHHHHHHHHHHHHHSEETTTTEECCE
T ss_pred HHHHHHHHHHHHHHHHHcCCHHH------------HHHHHHHHHHHHHHHHHhccCCCCCeeeee
Confidence 455544 45566667776321 267999999999999999999865544333
No 404
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=32.04 E-value=1.8e+02 Score=32.80 Aligned_cols=123 Identities=13% Similarity=0.085 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHhhccccCCCCCCCC---CCCCh-hHHHHHHHhhhhccccCCCCCcHHH---HHHHHHHHHHHHhCCC
Q 004888 281 PQNALRLCAEQLSKSYDSRFGGFGSAP---KFPRP-VEIQMMLYHSKKLEDTGKSGEASEG---QKMVLFTLQCMAKGGI 353 (725)
Q Consensus 281 ~~~~~~~~~~~l~~~~D~~~GGfg~ap---KFP~~-~~l~~ll~~~~~~~~~~~~~~~~~~---~~~~~~TL~~ma~gGi 353 (725)
+.+..+++++.+.+.-. ..||||..| -.|+. ..+..++-......+... ..-+++ ++-+..=|.++..
T Consensus 107 d~~~~~~~I~~Ils~Q~-~dGGFgg~p~~~~~~hla~TysAV~aL~ilg~~~p~-~~~~~Id~~r~k~v~fL~slQ~--- 181 (520)
T 3q7a_B 107 DQGTKDRVVSTLLHFLS-PKGGFGGGPANSQIPHLLPTYASVCSLAIAGNDSST-GGWKDLAAARQSIYEFFMRCKR--- 181 (520)
T ss_dssp CHHHHHHHHHHHHTTBC-TTSSBCSSCTTTSCCCHHHHHHHHHHHHHHCBSSTT-SBHHHHHHTHHHHHHHHHHHBC---
T ss_pred ChHHHHHHHHHHHHHcC-CCCCCCCCCCCCCCCcHHHHHHHHHHHHHhCccccc-hhhhhhhhHHHHHHHHHHHHhC---
Confidence 34456677777765544 579999988 34442 222222211111100000 000111 3334444555533
Q ss_pred cccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceee
Q 004888 354 HDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 425 (725)
Q Consensus 354 ~D~v~GGF~RYs~D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~Ggfys 425 (725)
-+|||+. ..|-.. .=...|- |..+ ..+.+.. -...++++++||++ .+..+|||-.
T Consensus 182 ---~DGSF~g----~~wGe~-Dir~TY~-Al~~------L~lLg~~-~~~~v~kav~fI~s-cQn~DGGfGe 236 (520)
T 3q7a_B 182 ---PDGGFVV----CEGGEV-DVRGTYC-LLVV------ATLLDII-TPELLHNVDKFVSA-CQTYEGGFAC 236 (520)
T ss_dssp ---TTSCBBS----STTCCB-CHHHHHH-HHHH------HHHHTCC-CHHHHTTHHHHHHT-TBCTTSSBCS
T ss_pred ---CCCCEec----CCCCCc-hHHHHHH-HHHH------HHHcCCC-ChHHHHHHHHHHHH-hcCCCCCccC
Confidence 4799974 356433 1122221 1111 1112221 12457889999987 6678999954
No 405
>3qxf_A Endoglucanase; cellulase, GH8, cellulose synthesis, cellulose degradation,; 1.85A {Escherichia coli k-12} PDB: 3qxq_A*
Probab=31.97 E-value=59 Score=34.88 Aligned_cols=88 Identities=16% Similarity=0.125 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCC-eEEEE-----ecCCCCCCCCCcc
Q 004888 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTH-RLQHS-----FRNGPSKAPGFLD 620 (725)
Q Consensus 547 al~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G-~l~~s-----~~~g~~~~~~~le 620 (725)
-.++.||++|++.-++ +.|.+.|+++++.|.++...+..| +..-. +.++.. ..-
T Consensus 98 l~IA~ALl~A~~~Wg~----------------~~Y~~~A~~il~~I~~~~v~~~~g~~~~LlpG~~gF~~~~~----~~~ 157 (355)
T 3qxf_A 98 VWMAWSLLEAGRLWKE----------------QRYTDIGSALLKRIAREEVVTVPGLGSMLLPGKVGFAEDNS----WRF 157 (355)
T ss_dssp HHHHHHHHHHHHHTTC----------------HHHHHHHHHHHHHHHHHHEEEETTTEEEECSSSSSSEETTE----EEE
T ss_pred HHHHHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHHhccccCCCCceeecCcccCccCCCC----Cee
Confidence 5788999999999997 789999999999998776554323 22211 111100 000
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004888 621 DYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDEL 655 (725)
Q Consensus 621 DyA~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~ 655 (725)
+=++++-++++++... +..|.+.+....+.+.+.
T Consensus 158 nPSY~~p~~~~~fa~~-~~~W~~l~~~~~~lL~~~ 191 (355)
T 3qxf_A 158 NPSYLPPTLAQYFTRF-GAPWTTLRETNQRLLLET 191 (355)
T ss_dssp CTTSSCHHHHHHHGGG-CTTHHHHHHHHHHHHHHT
T ss_pred chhhccHHHHHHHHHh-CChHHHHHHHHHHHHHHh
Confidence 1123445666666555 778999988888887663
No 406
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=31.68 E-value=4.3e+02 Score=26.85 Aligned_cols=120 Identities=11% Similarity=-0.025 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCh-hHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCeEE
Q 004888 284 ALRLCAEQLSKSYDSRFGGFGSAPKFPRP-VEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFH 362 (725)
Q Consensus 284 ~~~~~~~~l~~~~D~~~GGfg~apKFP~~-~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~ma~gGi~D~v~GGF~ 362 (725)
.+++.++.+.. +-...|||+.-+.=|.. ..-.+.+.......... ..++. ++.+.++=+.. -.-+-+|+|.
T Consensus 55 ~i~~g~~~~l~-~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~--~v~~~---~i~~a~~~L~~--~~Q~~dGsf~ 126 (310)
T 2wy7_A 55 LIKKGYTQQLA-FRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLI--AIDSQ---VLCGAVKWLIL--EKQKPDGVFQ 126 (310)
T ss_dssp HHHHHHHHHHT-TBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTS--CCCHH---HHHHHHHHHHH--HHBCTTSCBC
T ss_pred HHHHHHHHHHH-hcCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcC--CCCHH---HHHHHHHHHHH--hhcCCCCccc
Confidence 34555555653 46668999876654432 22223333222111111 11223 33444443321 0112457776
Q ss_pred EEecCCCCCCCCCc----------hhHHHHHHHHHHHHHHHHcc--CChHHHHHHHHHHHHHHHhc
Q 004888 363 RYSVDERWHVPHFE----------KMLYDQGQLANVYLDAFSLT--KDVFYSYICRDILDYLRRDM 416 (725)
Q Consensus 363 RYs~D~~W~vPHFE----------KMLyDNA~Ll~~ya~Ay~~t--~d~~y~~vA~~~~~fl~~~m 416 (725)
. .|.+.|-+ .-++-.|..+.+++++.... +-+.....++++++||.+..
T Consensus 127 ~-----~~~~~~~~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~ 187 (310)
T 2wy7_A 127 E-----DAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANY 187 (310)
T ss_dssp C-----SSCCSCGGGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHG
T ss_pred c-----CCCccCHhhcCCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHh
Confidence 3 56665532 23566899999998887653 33456778899999998864
No 407
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=31.58 E-value=1.3e+02 Score=25.95 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=25.7
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 004888 499 DSSASASKLGMPLEKYLNILGECRRKLFD 527 (725)
Q Consensus 499 ~~~~~a~~~g~~~e~~~~~l~~~r~kL~~ 527 (725)
+.+++|..+|++.+.+...+..++++|.+
T Consensus 41 s~~EIA~~lgiS~~tVr~~~~rAlkkLR~ 69 (99)
T 3t72_q 41 TLEEVGKQFDVTRERIRQIEAKALRKLRH 69 (99)
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999999974
No 408
>1g9g_A Cellulase CEL48F; processive-endo, hydrolase; 1.90A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1f9o_A* 1fbo_A* 1fce_A* 1fae_A 1fbw_A* 1f9d_A* 2qno_A* 1g9j_A*
Probab=30.81 E-value=3.4e+02 Score=30.61 Aligned_cols=110 Identities=15% Similarity=0.069 Sum_probs=72.3
Q ss_pred CCCCcchhhhcHHHHHHH---HHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ec-
Q 004888 535 PHLDDKVIVSWNGLVISS---FARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FR- 609 (725)
Q Consensus 535 P~lDdKiitsWNal~I~a---La~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s-~~- 609 (725)
|...|----.|=||-.|+ +|+.|-++|| ++...+-.+-+.|++.+..-..+|.+..- ..
T Consensus 401 PVYhDPpSN~WfG~QaWsmeRvAeyYY~tGd----------------~~Ak~ildKWv~W~~~~~~~~~~G~f~iPs~L~ 464 (629)
T 1g9g_A 401 PVYADPGSNTWFGMQVWSMQRVAELYYKTGD----------------ARAKKLLDKWAKWINGEIKFNADGTFQIPSTID 464 (629)
T ss_dssp CSCBTTBTTSBTHHHHHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHTSCEECTTSCEEEEEEEE
T ss_pred CccCCCCCCCccccchhhHHHHHHHHHhccc----------------HHHHHHHHHHHHHHHhceEECCCCCEecCCccc
Confidence 433343334477777776 5666778898 56777777888888877543345554421 11
Q ss_pred -CCCCCCC-----------------CCcchH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccC
Q 004888 610 -NGPSKAP-----------------GFLDDY---AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDRE 660 (725)
Q Consensus 610 -~g~~~~~-----------------~~leDy---A~li~aLL~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~ 660 (725)
.|+++.+ .+-.|- +-++.+|+-....+||....+.|++|++.+....-|..
T Consensus 465 WsGqPdtW~~~~s~~gN~~lhv~V~~~g~DvGva~s~A~tL~yYAa~sgd~~ak~~Ak~LLD~~W~~~~D~~ 536 (629)
T 1g9g_A 465 WEGQPDTWNPTQGYTGNANLHVKVVNYGTDLGCASSLANTLTYYAAKSGDETSRQNAQKLLDAMWNNYSDSK 536 (629)
T ss_dssp EESCCCCCCTTTCCCCCTTCEEEEEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHSEETT
T ss_pred ccCCCCccccCCCCCCCCCeEEEEeecCcchhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhCCCCC
Confidence 2444221 111232 56788888888899999999999999999998877753
No 409
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=30.61 E-value=3.8e+02 Score=28.10 Aligned_cols=115 Identities=7% Similarity=0.048 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCC-hh----HHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCC
Q 004888 284 ALRLCAEQLSKSYDSRFGGFGSAPKFPR-PV----EIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVG 358 (725)
Q Consensus 284 ~~~~~~~~l~~~~D~~~GGfg~apKFP~-~~----~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~ma~gGi~D~v~ 358 (725)
.++++++.+... =...||||.=++-+. +. .+.+|.+..... ..+ ..++.+.++-+.. +-.-+
T Consensus 92 ~i~~g~~~ll~~-Q~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~------~v~---~~~i~~a~~~L~~---~Q~~d 158 (367)
T 1hzf_A 92 LIQKGYMRIQQF-RKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQV------GGS---PEKLQETSNWLLS---QQQAD 158 (367)
T ss_dssp HHHHHHHHHHTT-BCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGT------CCC---HHHHHHHHHHHGG---GBCTT
T ss_pred HHHHHHHHHHhc-cCCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHh------CCC---HHHHHHHHHHHHH---hhccC
Confidence 455666666543 345789875443222 22 223333222110 111 3456666666544 22346
Q ss_pred CeEEEEecCCCCCCCCCch---------hHHHHHHHHHHHHHHHHccCC-------hHHHHHHHHHHHHHHHhc
Q 004888 359 GGFHRYSVDERWHVPHFEK---------MLYDQGQLANVYLDAFSLTKD-------VFYSYICRDILDYLRRDM 416 (725)
Q Consensus 359 GGF~RYs~D~~W~vPHFEK---------MLyDNA~Ll~~ya~Ay~~t~d-------~~y~~vA~~~~~fl~~~m 416 (725)
|+|.. .|.+-|-+. -++..|..+.++.++.....+ +.+...++++++||.+.+
T Consensus 159 G~~~~-----~~~~~~~~~~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~ 227 (367)
T 1hzf_A 159 GSFQD-----PCPVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKA 227 (367)
T ss_dssp SCBCC-----SSCCSCGGGGGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccc-----ccccccccccCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHhh
Confidence 88874 566655332 266678999999888766554 346677889999998864
No 410
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=30.02 E-value=51 Score=31.77 Aligned_cols=30 Identities=20% Similarity=0.410 Sum_probs=22.5
Q ss_pred cCCcEEEEEeccCChhhHhhhhhccCCHHHHH
Q 004888 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAK 168 (725)
Q Consensus 137 e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~ 168 (725)
..|..++.|.--.|++|+.++..++ +.+.+
T Consensus 28 ~a~vtvvef~D~~CP~C~~~~~~~~--~~l~~ 57 (202)
T 3gha_A 28 DAPVTVVEFGDYKCPSCKVFNSDIF--PKIQK 57 (202)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHTH--HHHHH
T ss_pred CCCEEEEEEECCCChhHHHHHHHhh--HHHHH
Confidence 3566788899999999999986543 45554
No 411
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=29.65 E-value=59 Score=33.51 Aligned_cols=79 Identities=10% Similarity=0.090 Sum_probs=56.1
Q ss_pred cHHHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHH
Q 004888 334 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLR 413 (725)
Q Consensus 334 ~~~~~~~~~~TL~~ma~gGi~D~v~GGF~RYs~D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~ 413 (725)
.+++.+++....+.+.. +-+-+|||.-|..+ +--.+..|..+.+++.|-.... .-.++.+++++||.
T Consensus 49 ~~~~~~~i~~g~~~~l~---~q~~dGgf~~f~~~--------~~s~wlTa~v~~~l~~a~~~~~--v~~~~i~~a~~~L~ 115 (310)
T 2wy7_A 49 RQGALELIKKGYTQQLA---FRQPSSAFAAFVKR--------APSTWLTAYVVKVFSLAVNLIA--IDSQVLCGAVKWLI 115 (310)
T ss_dssp HHHHHHHHHHHHHHHHT---TBCTTSCBCSSTTS--------CCCHHHHHHHHHHHHHHTTTSC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---hcCCCCCcccCCCC--------CccHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHH
Confidence 35777888888888876 46678999643211 1235678999999999876532 22467789999998
Q ss_pred HhccCCCCceee
Q 004888 414 RDMIGPGGEIFS 425 (725)
Q Consensus 414 ~~m~~~~Ggfys 425 (725)
++.+.++|.|+.
T Consensus 116 ~~~Q~~dGsf~~ 127 (310)
T 2wy7_A 116 LEKQKPDGVFQE 127 (310)
T ss_dssp HHHBCTTSCBCC
T ss_pred HhhcCCCCcccc
Confidence 646678898864
No 412
>1wu4_A Xylanase Y; (alpla/alpha)6 barrel, glycoside hydrolase family 8, hydrola; 1.35A {Bacillus halodurans} SCOP: a.102.1.2 PDB: 1wu5_A* 3a3v_A 2drr_A 2drs_A 1wu6_A* 2drq_A 2dro_A
Probab=28.75 E-value=59 Score=35.29 Aligned_cols=102 Identities=13% Similarity=0.026 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCC-hHHHHHHHHHHHHHHHHhccccCCCeEEEEecCC-CCC-CCCCcchHH
Q 004888 547 GLVISSFARASKILKSEAESAMFNFPVVGSD-RKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG-PSK-APGFLDDYA 623 (725)
Q Consensus 547 al~I~aLa~A~~vl~d~~~~~~~~~~~~~~~-~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~~g-~~~-~~~~leDyA 623 (725)
-.++.||+.|++.-|+. .. ..+|.+.|.++++.|.++-.....|.++.- ... ... ..+..-+=+
T Consensus 131 l~IA~ALl~A~~~Wg~~------------~g~~~~Y~~~A~~il~~i~~~~~~~~~~~~l~p-~~~~~~f~~~~~~~npS 197 (396)
T 1wu4_A 131 EYFALALFFASHRWGDG------------DEQPFNYSEQARKLLHTCVHNGEGGPGHPMWNR-DNKLIKFIPEVEFSDPS 197 (396)
T ss_dssp HHHHHHHHHHHHHHCCC------------SSTTCCHHHHHHHHHHHHHHTTSSSSCCCSBCT-TTCCBCSSTTCSEECGG
T ss_pred HHHHHHHHHHHHHhCCC------------CCCcHHHHHHHHHHHHHHHHhhccCCCcceecC-CCceeeecCCCCeeChh
Confidence 57889999999999841 00 157999999999999887654211111100 000 000 001111123
Q ss_pred HHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHccccCCC
Q 004888 624 FLISGLLDLYE----FGSGTKWLVWAIELQNTQDELFLDREGG 662 (725)
Q Consensus 624 ~li~aLL~LYe----~Tgd~~yL~~A~~L~~~~~~~F~D~~~G 662 (725)
+.+-++.+++. .++++.|.+.+....+.+.+... +..|
T Consensus 198 Y~~pa~~~~fa~~~~~~~~~~W~~~~~~~~~lL~~~~~-~~tG 239 (396)
T 1wu4_A 198 YHLPHFYELFSLWANEEDRVFWKEAAEASREYLKIACH-PETG 239 (396)
T ss_dssp GCCHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHSC-TTTC
T ss_pred hccHHHHHHHHHhcccccChhHHHHHHHHHHHHHhccc-CCCC
Confidence 33457777755 56777899999988888766543 3344
No 413
>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10
Probab=27.61 E-value=69 Score=30.65 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=18.9
Q ss_pred cCCcEEEEE-eccCChhhHhhhhhccCC
Q 004888 137 RDVPIFLSI-GYSTCHWCHVMEVESFED 163 (725)
Q Consensus 137 e~KpI~l~~-g~~wC~~C~~Me~e~f~d 163 (725)
.||+|+|+| =.+||+.|...+-..|.+
T Consensus 42 ~gk~vVL~fyP~~fTp~Ct~~e~~~f~~ 69 (182)
T 1xiy_A 42 NNKKILLISLPGAFTPTCSTKMIPGYEE 69 (182)
T ss_dssp TTCEEEEEECSCTTCHHHHHTHHHHHHH
T ss_pred CCCcEEEEEeCCCCCCCCCHHHHHHHHH
Confidence 478877765 568999999555545543
No 414
>4glt_A Glutathione S-transferase-like protein; structural genomics, function initiative, EFI; HET: GSH; 2.20A {Methylobacillus flagellatus}
Probab=27.37 E-value=2.4e+02 Score=26.89 Aligned_cols=59 Identities=15% Similarity=-0.014 Sum_probs=38.0
Q ss_pred EEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCccc
Q 004888 144 SIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 218 (725)
Q Consensus 144 ~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~ 218 (725)
-++++.|++|++.. -+....+=.|-.+.||..+.++ .| ..++..+-.|+.+ ++||+.|.
T Consensus 25 Ly~~~~SP~~~rVr-------~~L~e~gi~~e~~~v~~~~~~~---~~----~~~nP~gkVPvL~--~~dG~~l~ 83 (225)
T 4glt_A 25 LLYSNTSPYARKVR-------VVAAEKRIDVDMVLVVLADPEC---PV----ADHNPLGKIPVLI--LPDGESLY 83 (225)
T ss_dssp EEECSSCHHHHHHH-------HHHHHHTCCCEEEECCTTCSSS---CG----GGTCTTCCSCEEE--CTTSCEEC
T ss_pred EecCCCCHHHHHHH-------HHHHHhCCCCEEEEeCCCCCCH---HH----HHhCCCCCCCEEE--eCCCCEEe
Confidence 46789999999753 2334444478889998765442 12 1223456689654 68898775
No 415
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=26.15 E-value=1.5e+02 Score=26.00 Aligned_cols=54 Identities=13% Similarity=0.188 Sum_probs=39.4
Q ss_pred echHHHHHHhh-----hhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHH
Q 004888 448 WTSKEVEDILG-----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECR 522 (725)
Q Consensus 448 wt~~Ei~~~lg-----~~~~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~e~~~~~l~~~r 522 (725)
.|.+|++.+.+ +..--++..|.+. |. +-+++|+.+|++...+.+.|+.++
T Consensus 5 mT~~eFe~~~~~l~~~~~~~~~A~lyYv~------------------g~-------tQ~eIA~~lGiSR~~VsrlL~~Ar 59 (101)
T 2w7n_A 5 LTESQFQEAIQGLEVGQQTIEIARGVLVD------------------GK-------PQATFATSLGLTRGAVSQAVHRVW 59 (101)
T ss_dssp CCHHHHHHHHTTCCCCHHHHHHHHHHHTT------------------CC-------CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHccCChHHHHHHHHHHHHHc------------------CC-------CHHHHHHHHCCCHHHHHHHHHHHH
Confidence 57888998886 2333444555442 22 235799999999999999999999
Q ss_pred HHHH
Q 004888 523 RKLF 526 (725)
Q Consensus 523 ~kL~ 526 (725)
+.+.
T Consensus 60 ~~~~ 63 (101)
T 2w7n_A 60 AAFE 63 (101)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8874
No 416
>3c68_A Uncharacterized protein YGJK; GH63, processing alpha-glucosidase, alpha/alpha barrel, hydrolase; HET: BMA; 1.50A {Escherichia coli} PDB: 3c67_A* 2ds3_A* 3c69_A* 3d3i_A
Probab=26.08 E-value=70 Score=37.67 Aligned_cols=43 Identities=12% Similarity=0.107 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHccccCCCccccc
Q 004888 625 LISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNT 667 (725)
Q Consensus 625 li~aLL~LYe~Tgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t 667 (725)
+...+.++.+..|++ +|.+.|.++.+.+.++|||++.|.||+.
T Consensus 561 al~~lA~lA~~LG~~e~A~~y~~~A~~lk~ai~~~fWd~e~G~y~D~ 607 (761)
T 3c68_A 561 DNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDV 607 (761)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTEETTTTEECCE
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcCccCCEEEEE
Confidence 344555677777875 6899999999999999999998888754
No 417
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=26.06 E-value=18 Score=32.33 Aligned_cols=62 Identities=11% Similarity=0.066 Sum_probs=34.9
Q ss_pred EEEEeccCChhhHhhhhhccCCHHHHHHHhcC-cEEEEEcCCCCcchHHHHHHHHHHhcCCCCcC-cEEEecCCCCcc
Q 004888 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGGGGWP-LSVFLSPDLKPL 217 (725)
Q Consensus 142 ~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~-FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P-~~vfl~pdG~~i 217 (725)
+..++.++|.+|++-. ++|+++ .-+..+|+.+.|.-.......++.+ ||| .--+++..|...
T Consensus 6 i~iY~~p~C~~c~ka~----------~~L~~~gi~~~~~di~~~~~t~~eL~~~l~~~----g~~~~~~l~n~~~~~~ 69 (119)
T 3f0i_A 6 VVIYHNPKCSKSRETL----------ALLENQGIAPQVIKYLETSPSVEELKRLYQQL----GLNEVRAMMRCKEELY 69 (119)
T ss_dssp CEEECCTTCHHHHHHH----------HHHHHTTCCCEEECHHHHCCCHHHHHHHHHHH----TCSSGGGGBCTTSHHH
T ss_pred EEEEECCCChHHHHHH----------HHHHHcCCceEEEEeccCcCcHHHHHHHHHHc----CCccHHHHhcCCCchh
Confidence 3456899999999865 344443 2223355543333333344444443 787 656677776644
No 418
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=25.80 E-value=30 Score=32.41 Aligned_cols=18 Identities=6% Similarity=-0.112 Sum_probs=14.2
Q ss_pred cCCCCcCcEEEecCCCCcccc
Q 004888 199 YGGGGWPLSVFLSPDLKPLMG 219 (725)
Q Consensus 199 ~g~~G~P~~vfl~pdG~~i~~ 219 (725)
.|+.|+|++|| +|+.+.+
T Consensus 145 ~gv~GtPt~vv---nG~~~~G 162 (186)
T 3bci_A 145 NHIKTTPTAFI---NGEKVED 162 (186)
T ss_dssp TTCCSSSEEEE---TTEECSC
T ss_pred cCCCCCCeEEE---CCEEcCC
Confidence 48999999987 7876643
No 419
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=25.68 E-value=53 Score=36.81 Aligned_cols=65 Identities=15% Similarity=0.131 Sum_probs=41.8
Q ss_pred hhcCCcEEEEEeccCChhhHhhhhhccCCHHHHHHHh-cCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCC
Q 004888 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (725)
Q Consensus 135 k~e~KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln-~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pd 213 (725)
...++++.|.|.... +.--.+++.-+. ...|.|....+...++.+.| |+.++|+.|+++++
T Consensus 154 ~~~~~~vallF~~~~----------s~~~~~~~ldl~~~~~v~v~~v~~~~~~l~~kf--------gV~~~Pslvl~~~n 215 (519)
T 3t58_A 154 RNKADYLALVFERED----------SYLGREVTLDLSQYHAVAVRRVLNTESDLVNKF--------GVTDFPSCYLLLRN 215 (519)
T ss_dssp SCCCSEEEEEEECTT----------CCHHHHHHHHTTTCTTEEEEEEETTCHHHHHHH--------TCCCSSEEEEEETT
T ss_pred cCCCCeEEEEecCCc----------hHHHHHHHHHhhccCCeeEEEecCchHHHHHHc--------CCCCCCeEEEEeCC
Confidence 366788888888543 111123333333 34566665555455665555 89999999999999
Q ss_pred CCcc
Q 004888 214 LKPL 217 (725)
Q Consensus 214 G~~i 217 (725)
|+..
T Consensus 216 Gk~~ 219 (519)
T 3t58_A 216 GSVS 219 (519)
T ss_dssp SCEE
T ss_pred Ccee
Confidence 9854
No 420
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=25.55 E-value=1.2e+02 Score=32.19 Aligned_cols=77 Identities=6% Similarity=0.057 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Q 004888 335 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRR 414 (725)
Q Consensus 335 ~~~~~~~~~TL~~ma~gGi~D~v~GGF~RYs~D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~ 414 (725)
+++.+.+...++.+.. . -+-+|||.-|-.++ --.+..|..+.++++|......+ ..+.+++++||.+
T Consensus 87 ~~~~~~i~~g~~~ll~--~-Q~~dGgf~~~~~~~--------~~~~lTa~v~~~l~~a~~~~~v~--~~~i~~a~~~L~~ 153 (367)
T 1hzf_A 87 DHAVDLIQKGYMRIQQ--F-RKADGSYAAWLSRD--------SSTWLTAFVLKVLSLAQEQVGGS--PEKLQETSNWLLS 153 (367)
T ss_dssp HHHHHHHHHHHHHHHT--T-BCTTSCBCSSTTSC--------CCHHHHHHHHHHHHHHGGGTCCC--HHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHh--c-cCCCCCeeccCCCC--------CcHHHHHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHH
Confidence 4566777777777764 3 34689995332221 12467899999999987764322 4688899999987
Q ss_pred hccCCCCceee
Q 004888 415 DMIGPGGEIFS 425 (725)
Q Consensus 415 ~m~~~~Ggfys 425 (725)
.+.++|+|+.
T Consensus 154 -~Q~~dG~~~~ 163 (367)
T 1hzf_A 154 -QQQADGSFQD 163 (367)
T ss_dssp -GBCTTSCBCC
T ss_pred -hhccCCCccc
Confidence 5678899875
No 421
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=25.40 E-value=6.8e+02 Score=28.37 Aligned_cols=139 Identities=12% Similarity=-0.015 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHH-----HhccccCCCeEE--------EEecCCCC
Q 004888 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIR-----RHLYDEQTHRLQ--------HSFRNGPS 613 (725)
Q Consensus 547 al~I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~-----~~l~d~~~G~l~--------~s~~~g~~ 613 (725)
++++.||...+..+|+ .+.|.+..+||. +.++.+. |.+. ....+|..
T Consensus 56 a~t~~aL~~~~~~~G~-------------------~~~a~~~~~~l~~~~~lQ~~y~~~-G~~~~~~~l~E~~~~ldG~~ 115 (599)
T 2vn4_A 56 ALVFKNLIDRFTETYD-------------------AGLQRRIEQYITAQVTLQGLSNPS-GSLADGSGLGEPKFELTLKP 115 (599)
T ss_dssp HHHHHHHHHHHHHSBC-------------------HHHHHHHHHHHHHHHHHHHCCBTT-BCSTTSGGGGCCEECTTSCB
T ss_pred HHHHHHHHHHHHhCCC-------------------HHHHHHHHHHHhcccceeeeeCCC-CCcccccCcCceEEecCCcc
Confidence 7888888876655554 245555666663 3455553 3321 11234433
Q ss_pred ---CC-CCCcchH-----HHHHHHHHHHHHHcCCHHHH-----HHHHHHHHHHHHHccccCCCcccccCCCCCccccccc
Q 004888 614 ---KA-PGFLDDY-----AFLISGLLDLYEFGSGTKWL-----VWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVK 679 (725)
Q Consensus 614 ---~~-~~~leDy-----A~li~aLL~LYe~Tgd~~yL-----~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~~~~r~k 679 (725)
.+ ....|.+ ++.+.+. .|..+|+..++ ...+.+++++.++ |+..+-+ .+
T Consensus 116 ~~~~w~~~Q~D~~glr~~~~~~~~~--~~~~~g~~~~~~~~~w~~v~~~l~~v~~~-w~~~d~d--------------lW 178 (599)
T 2vn4_A 116 FTGNWGRPQRDGPALRAIALIGYSK--WLINNNYQSTVSNVIWPIVRNDLNYVAQY-WNQTGFD--------------LW 178 (599)
T ss_dssp CCSCCSCCCTHHHHHHHHHHHHHHH--HHHHTTCHHHHHHHTHHHHHHHHHHHHHH-TTSCEEC--------------TT
T ss_pred ccCcCCCeeccccchhHHHHHHHHH--HHHHhCCcccccHHHHHHHHHHHHHHHHh-CCCCCCC--------------ee
Confidence 11 1334443 4444443 36778887543 3445555555443 3322111 12
Q ss_pred cCCCCCCCChHHHHHHH---HHHHHHhhCCCCchHHHHHHHHHHHHh
Q 004888 680 EDHDGAEPSGNSVSVIN---LVRLASIVAGSKSDYYRQNAEHSLYLR 723 (725)
Q Consensus 680 ~~~D~a~PS~Nsv~a~~---LlrL~~~t~~~~~~~y~~~A~~~l~~~ 723 (725)
|...+..++..++...+ ..+|++..|+. ...|++.|+++...+
T Consensus 179 Eer~g~~~~T~~~~~~aL~~aa~lA~~~g~~-~~~w~~~ad~i~~~i 224 (599)
T 2vn4_A 179 EEVNGSSFFTVANQHRALVEGATLAATLGQS-GSAYSSVAPQVLCFL 224 (599)
T ss_dssp SCCEEEEHHHHHHHHHHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHH
T ss_pred eecCCcchHHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHH
Confidence 22233344555543333 46667777765 478999999887654
No 422
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=25.15 E-value=1e+02 Score=35.61 Aligned_cols=39 Identities=28% Similarity=0.323 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceee
Q 004888 379 LYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 425 (725)
Q Consensus 379 LyDNA~Ll~~ya~Ay~~t~d~~y~~vA~~~~~fl~~~m~~~~Ggfys 425 (725)
+-|+++.+.++..+ ++ .+.|++.++||.+. +.++|++..
T Consensus 342 ~RD~~~~~~al~~~----G~---~~~a~~~l~~l~~~-q~~~G~~~~ 380 (684)
T 1lf6_A 342 SRDLYHVANAFIAA----GD---VDSANRSLDYLAKV-VKDNGMIPQ 380 (684)
T ss_dssp HHHHHHHHHHHHHH----TC---HHHHHHHHHHHHHH-HHHHSSCCS
T ss_pred ccHHHHHHHHHHHc----CC---HHHHHHHHHHHHhh-cCCCCCccc
Confidence 45888888888764 33 46899999999874 345676643
No 423
>2g2q_A Glutaredoxin-2; thioredoxin-fold, oxidoreductase, poxvirus; 2.50A {Vaccinia virus}
Probab=24.57 E-value=68 Score=29.09 Aligned_cols=36 Identities=17% Similarity=0.350 Sum_probs=31.5
Q ss_pred CcEEEEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcC
Q 004888 139 VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDR 181 (725)
Q Consensus 139 KpI~l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ 181 (725)
|..+|-||-+-|+-|+.-. ++.+.|.+.|-.++||.
T Consensus 2 K~tLILfGKP~C~vCe~~s-------~~l~~ledeY~ilrVNI 37 (124)
T 2g2q_A 2 KNVLIIFGKPYCSICENVS-------DAVEELKSEYDILHVDI 37 (124)
T ss_dssp CEEEEEEECTTCHHHHHHH-------HHHHTTTTTEEEEEEEC
T ss_pred CceEEEeCCCccHHHHHHH-------HHHHHhhccccEEEEEe
Confidence 6789999999999999875 56688888999999996
No 424
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A
Probab=24.41 E-value=2.8e+02 Score=28.82 Aligned_cols=39 Identities=8% Similarity=0.107 Sum_probs=30.0
Q ss_pred HHHHHHHhhcCCcEEEEEecc--CChhhHhhhhhccCCHHH
Q 004888 128 EEAFAEARKRDVPIFLSIGYS--TCHWCHVMEVESFEDEGV 166 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~--wC~~C~~Me~e~f~d~eV 166 (725)
.+..+.||+.|--|+|+|+++ |+.+++.....-+.+..+
T Consensus 63 ~~~~~~ak~~Gl~v~ld~hysd~wadP~~q~~p~~W~~~~~ 103 (334)
T 1fob_A 63 LELAKRVKAAGMSLYLDLHLSDTWADPSDQTTPSGWSTTDL 103 (334)
T ss_dssp HHHHHHHHHTTCEEEEEECCSSSCCBTTBCBCCTTSCSSCH
T ss_pred HHHHHHHHHCCCEEEEEeccCCCCCCcccccCccccccCCh
Confidence 567778999999999999886 888887766555555433
No 425
>3c68_A Uncharacterized protein YGJK; GH63, processing alpha-glucosidase, alpha/alpha barrel, hydrolase; HET: BMA; 1.50A {Escherichia coli} PDB: 3c67_A* 2ds3_A* 3c69_A* 3d3i_A
Probab=24.11 E-value=94 Score=36.61 Aligned_cols=51 Identities=22% Similarity=0.304 Sum_probs=37.6
Q ss_pred cHHHH---HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE
Q 004888 545 WNGLV---ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS 607 (725)
Q Consensus 545 WNal~---I~aLa~A~~vl~d~~~~~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s 607 (725)
-|+++ ...+++.++++|++.. ..+|.+.|.++.+.+.++||+++.|.++..
T Consensus 554 lnA~ly~al~~lA~lA~~LG~~e~------------A~~y~~~A~~lk~ai~~~fWd~e~G~y~D~ 607 (761)
T 3c68_A 554 QASYMYSDNHYLAEMATILGKPEE------------AKRYRQLAQQLADYINTCMFDPTTQFYYDV 607 (761)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHH------------HHHHHHHHHHHHHHHHHHTEETTTTEECCE
T ss_pred HHHHHHHHHHHHHHHHHHhCChHH------------HHHHHHHHHHHHHHHHHhCcCccCCEEEEE
Confidence 35555 4466777778886321 267999999999999999999887766533
No 426
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=24.10 E-value=53 Score=31.65 Aligned_cols=33 Identities=12% Similarity=0.037 Sum_probs=21.4
Q ss_pred cCCCCcCcEEEecCCCCccccccccCCCCCCCcchHHHHHHHHH
Q 004888 199 YGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (725)
Q Consensus 199 ~g~~G~P~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i~ 242 (725)
.|+.|+|+++| +|+.+.+ ..|++ .|.++|+++.
T Consensus 159 ~gV~gtPtfvv---nG~~~~G--~~~~e------~l~~~i~~~~ 191 (202)
T 3gha_A 159 MNIQATPTIYV---NDKVIKN--FADYD------EIKETIEKEL 191 (202)
T ss_dssp TTCCSSCEEEE---TTEECSC--TTCHH------HHHHHHHHHH
T ss_pred cCCCcCCEEEE---CCEEecC--CCCHH------HHHHHHHHHH
Confidence 48999999998 7877644 23432 5555555443
No 427
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=24.10 E-value=78 Score=34.85 Aligned_cols=53 Identities=23% Similarity=0.236 Sum_probs=39.3
Q ss_pred HHHHHhh----hhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHH
Q 004888 452 EVEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLF 526 (725)
Q Consensus 452 Ei~~~lg----~~~~l~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~e~~~~~l~~~r~kL~ 526 (725)
++..+|. .+..++.-.|++..+.. .+.+++|..+|++.+.|++++..+++||.
T Consensus 368 ~L~~aL~~L~ereR~VI~LRygL~~~e~----------------------~TleEIAe~LgIS~erVRqi~~RAlkKLR 424 (438)
T 1l9z_H 368 ELEKALSKLSEREAMVLKLRKGLIDGRE----------------------HTLEEVGAYFGVTRERIRQIENKALRKLK 424 (438)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhccCCCC----------------------CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 3445554 24667778888753211 24568999999999999999999999997
No 428
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}
Probab=24.09 E-value=56 Score=31.77 Aligned_cols=32 Identities=19% Similarity=0.141 Sum_probs=21.0
Q ss_pred cCCCCcCcEEEecCCCCccccccccCCCCCCCcchHHHHHHHH
Q 004888 199 YGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKV 241 (725)
Q Consensus 199 ~g~~G~P~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i 241 (725)
.|+.|+|+++| +|+.+.| +.|++ .|.++|+.+
T Consensus 164 ~GV~GtPtfvv---ng~~~~G--~~~~e------~l~~~i~~~ 195 (205)
T 3gmf_A 164 YNVSGTPSFMI---DGILLAG--THDWA------SLRPQILAR 195 (205)
T ss_dssp HCCCSSSEEEE---TTEECTT--CCSHH------HHHHHHHHH
T ss_pred cCCccCCEEEE---CCEEEeC--CCCHH------HHHHHHHHH
Confidence 48999999998 6776643 33433 555555544
No 429
>2wam_A RV2714, conserved hypothetical alanine and leucine rich protein; unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=24.08 E-value=3.4e+02 Score=28.90 Aligned_cols=161 Identities=15% Similarity=0.176 Sum_probs=99.0
Q ss_pred CCChhhhcccCCC-CccccchHHHHHHHhhcCCcEEEEEecc--CCh---hhHhhhhhccCCHHHHHHHhcCcEEEEEcC
Q 004888 108 EHSPYLLQHAHNP-VDWFAWGEEAFAEARKRDVPIFLSIGYS--TCH---WCHVMEVESFEDEGVAKLLNDWFVSIKVDR 181 (725)
Q Consensus 108 e~spyl~~ha~~~-V~W~~~~~eAl~~Ak~e~KpI~l~~g~~--wC~---~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ 181 (725)
...|+|+.+...| ..|..+..+.++.|++-|--.+|.+|+= -|+ +..+.- +-+++++.+.+...+-.+
T Consensus 140 ~g~~~LlL~G~eP~~~w~~fa~~vl~~a~~~gV~~vvtLgglp~~vphtRp~~V~~--~at~~el~~~~~~~~~~~---- 213 (351)
T 2wam_A 140 IGTPFLLLAGLEPDLKWERFITAVRLLAERLGVRQTIGLGTVPMAVPHTRPITMTA--HSNNRELISDFQPSISEI---- 213 (351)
T ss_dssp TCCEEEEEEEECCSBCHHHHHHHHHHHHHHTTCCEEEEEEEEEESCCTTSCCCEEE--EESSGGGGTTSCCCCCSE----
T ss_pred CCCcEEEEECCCChhHHHHHHHHHHHHHHHhCCCEEEEEecccCCCCCccCcceEE--EECCHHHHHhcCCccCcc----
Confidence 4467888886554 8999999999999999998888877652 332 212211 124666654443211111
Q ss_pred CCCcc-hHHHHHHHHHHhcCCCCcCcEEEecCCCCccccccccCCCCCCCcchHHHHHHHHHHHHh--hchHHHHHhHHH
Q 004888 182 EERPD-VDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWD--KKRDMLAQSGAF 258 (725)
Q Consensus 182 ee~pd-~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i~~~~~--~~~~~l~~~a~~ 258 (725)
+-|- +...++..+ +..|.|...|+-. .-.|+.-. .....=+.+|+.|.++.. =+-+.|.+.|++
T Consensus 214 -~gp~GisglL~~~~----~~~Gi~a~~l~~~------vP~Yla~~--pdP~AA~alL~~L~~llgl~ip~~~L~e~Ae~ 280 (351)
T 2wam_A 214 -QVPGSASNLLEYRM----AQHGHEVVGFTVH------VPHYLTQT--DYPAAAQALLEQVAKTGSLQLPLAVLAEAAAE 280 (351)
T ss_dssp -EEECCHHHHHHHHH----HHTTCCEEEEEEE------EEGGGTTS--CCHHHHHHHHHHHHHHHTCCCCCHHHHHHHHH
T ss_pred -cccccHHHHHHHHH----HHcCCCEEEEEEe------CCccccCC--CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 1122 223333333 3458999998733 11244210 112356778888887764 468999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHhhcccc
Q 004888 259 AIEQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYDSR 299 (725)
Q Consensus 259 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~~ 299 (725)
+.+++.+..... +.+.+.+++|.+.||..
T Consensus 281 ie~~i~el~~~~------------~e~~~~V~~LE~qyD~~ 309 (351)
T 2wam_A 281 VQAKIDEQVQAS------------AEVAQVVAALERQYDAF 309 (351)
T ss_dssp HHHHHHHHHTTC------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC------------HHHHHHHHHHHhhhchh
Confidence 999998765421 23456778888999885
No 430
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=23.84 E-value=68 Score=24.65 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=25.7
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 004888 499 DSSASASKLGMPLEKYLNILGECRRKLFD 527 (725)
Q Consensus 499 ~~~~~a~~~g~~~e~~~~~l~~~r~kL~~ 527 (725)
+..++|+.+|+++..+...+..++++|.+
T Consensus 33 s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 33 SYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999999964
No 431
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0
Probab=23.60 E-value=51 Score=31.21 Aligned_cols=35 Identities=20% Similarity=0.082 Sum_probs=23.1
Q ss_pred cCCCCcCcEEEecCCCCccc-cccccCCCCCCCcchHHHHHHHHH
Q 004888 199 YGGGGWPLSVFLSPDLKPLM-GGTYFPPEDKYGRPGFKTILRKVK 242 (725)
Q Consensus 199 ~g~~G~P~~vfl~pdG~~i~-~~tY~p~~~~~~~~~F~~~L~~i~ 242 (725)
.|+.|+|++|| +|+.+. ..+..|.+ .|.++|+.+.
T Consensus 148 ~gv~GtPtfvv---ng~~~v~~~Ga~~~e------~~~~~i~~ll 183 (185)
T 3feu_A 148 SGISSVPTFVV---NGKYNVLIGGHDDPK------QIADTIRYLL 183 (185)
T ss_dssp HTCCSSSEEEE---TTTEEECGGGCSSHH------HHHHHHHHHH
T ss_pred cCCCccCEEEE---CCEEEEecCCCCCHH------HHHHHHHHHH
Confidence 48999999997 777543 23344543 6777776653
No 432
>2rdy_A BH0842 protein; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.03A {Bacillus halodurans c-125}
Probab=23.26 E-value=2.2e+02 Score=33.63 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHH
Q 004888 621 DYAFLISGLLDLYEFGSGTKWLVW-AIELQNTQDE 654 (725)
Q Consensus 621 DyA~li~aLL~LYe~Tgd~~yL~~-A~~L~~~~~~ 654 (725)
.-|+++.++.+.|++|||.+||.. +-.++.-+.+
T Consensus 449 ~~awla~~lw~yy~~TgD~~fL~~~~~p~l~e~A~ 483 (803)
T 2rdy_A 449 GGVWLTQHLWEHYTFGEDEAYLRDTAYPIMKEAAL 483 (803)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhCCHHHHHhhchHHHHHHHH
Confidence 348899999999999999999976 5555554443
No 433
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Probab=22.81 E-value=2.6e+02 Score=29.17 Aligned_cols=36 Identities=11% Similarity=0.157 Sum_probs=27.3
Q ss_pred HHHHHHHhhcCCcEEEEEecc--CChhhHhhhhhccCC
Q 004888 128 EEAFAEARKRDVPIFLSIGYS--TCHWCHVMEVESFED 163 (725)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~--wC~~C~~Me~e~f~d 163 (725)
.++.+.||+.|-.|+|+|+++ |+-+|+......+.+
T Consensus 63 ~~~~~~A~~~GlkV~ld~Hysd~WadPg~Q~~p~~W~~ 100 (332)
T 1hjs_A 63 IAIAKRAKAAGLGVYIDFHYSDTWADPAHQTMPAGWPS 100 (332)
T ss_dssp HHHHHHHHHTTCEEEEEECCSSSCCBTTBCBCCTTCCC
T ss_pred HHHHHHHHHCCCEEEEEeccCCCcCCccccCCcccccc
Confidence 557888999999999999885 888877654334444
No 434
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=22.06 E-value=81 Score=26.16 Aligned_cols=29 Identities=21% Similarity=0.119 Sum_probs=25.6
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 004888 499 DSSASASKLGMPLEKYLNILGECRRKLFD 527 (725)
Q Consensus 499 ~~~~~a~~~g~~~e~~~~~l~~~r~kL~~ 527 (725)
+..++|+.+|++...+...+..++++|.+
T Consensus 55 s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 55 STAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999998875
No 435
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}
Probab=21.68 E-value=43 Score=32.60 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=18.4
Q ss_pred CCcEEEEEeccCChhhHhhhhhcc
Q 004888 138 DVPIFLSIGYSTCHWCHVMEVESF 161 (725)
Q Consensus 138 ~KpI~l~~g~~wC~~C~~Me~e~f 161 (725)
.+..++.|.--.|++|+.++.+++
T Consensus 15 a~vtivef~D~~Cp~C~~~~~~~~ 38 (205)
T 3gmf_A 15 AKLRLVEFVSYTCPHCSHFEIESE 38 (205)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHH
T ss_pred CCeEEEEEECCCCHHHHHHHHHHH
Confidence 344677888899999999985433
No 436
>2p90_A Hypothetical protein CGL1923; structural genomics, PSI-2, MCSG structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} SCOP: c.56.8.1
Probab=21.54 E-value=3.8e+02 Score=27.91 Aligned_cols=164 Identities=15% Similarity=0.120 Sum_probs=98.1
Q ss_pred CChhhhcccC-CCCccccchHHHHHHHhhcCCcEEEEEecc--CChhhHhhhhh-ccCCHHHHHHHhcCcEEEEEcCCCC
Q 004888 109 HSPYLLQHAH-NPVDWFAWGEEAFAEARKRDVPIFLSIGYS--TCHWCHVMEVE-SFEDEGVAKLLNDWFVSIKVDREER 184 (725)
Q Consensus 109 ~spyl~~ha~-~~V~W~~~~~eAl~~Ak~e~KpI~l~~g~~--wC~~C~~Me~e-~f~d~eVa~~ln~~FV~VkvD~ee~ 184 (725)
..++|+.+.. .+..|+.+..+.++.|++-|---+|.+++- -++--+...-. +-+++++.+.+...+-.. .-
T Consensus 101 g~~~lll~gpeP~~~w~~f~~~vl~~a~~~gV~~vv~Lggl~~~~phtrp~~V~~~at~~~l~~~~~~~~~~~-----~i 175 (319)
T 2p90_A 101 NKPFLMLSGPEPDLRWGDFSNAVVDLVEKFGVENTICLYAAPMTVPHTRPTVVTAHGNSTDRLKDQVSLDTRM-----TV 175 (319)
T ss_dssp CCEEEEEEEECCSBCHHHHHHHHHHHHHHTTCCEEEEEEEEEESCCTTSCCCEEEEESSGGGCSSCCCCCCCE-----EE
T ss_pred CCeEEEEECCCChHHHHHHHHHHHHHHHHcCCCEEEEEeCccCCCCCCCCCCeEEEeCCHHHHhhhhccccCc-----EE
Confidence 4578887744 458999999999999999998877777652 23211111100 123455443232110000 01
Q ss_pred cc-hHHHHHHHHHHhcCCCCcCcEEEecCCCCccccccccCCCCCCCcchHHHHHHHHHHHHh--hchHHHHHhHHHHHH
Q 004888 185 PD-VDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWD--KKRDMLAQSGAFAIE 261 (725)
Q Consensus 185 pd-~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~~~tY~p~~~~~~~~~F~~~L~~i~~~~~--~~~~~l~~~a~~~~~ 261 (725)
|- +...++..+ +..|.|...|+-. .-.|++.. .....=+.+|+.|.+... =+-+.|.+.|+++.+
T Consensus 176 pggi~glL~~~~----~~~Gi~a~~l~~~------vphYl~~~--pdP~AA~~lL~~l~~l~gl~id~~~L~e~A~~~e~ 243 (319)
T 2p90_A 176 PGSASLMLEKLL----KDKGKNVSGYTVH------VPHYVSAS--PYPAATLKLLQSIADSADLNLPLLALERDAEKVHR 243 (319)
T ss_dssp CCCHHHHHHHHH----HHTTCCEEEEEEE------EEGGGTTS--CCHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHH
T ss_pred eccHHHHHHHHH----HHCCCCEEEEEEe------cCcccCCC--CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 32 344443333 3458999988752 12344311 123466778888887764 468999999999999
Q ss_pred HHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHhhccccCC
Q 004888 262 QLSEALSASASSNKLPDELPQNALRLCAEQLSKSYDSRFG 301 (725)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~G 301 (725)
++++..... +-+.+.+++|.+.||..-+
T Consensus 244 ~i~~l~~~~------------~e~~~~V~~LE~~~D~~~~ 271 (319)
T 2p90_A 244 QLMEQTEES------------SEIQRVVGALEQQYDSELE 271 (319)
T ss_dssp HHHHHHHHC------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh------------HHHHHHHHHHHhhhhhhhh
Confidence 998766532 2245667888899998643
No 437
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A
Probab=21.43 E-value=2.5e+02 Score=31.10 Aligned_cols=118 Identities=14% Similarity=0.069 Sum_probs=65.1
Q ss_pred CCCCCcchhhhcHHHHHHHHHHHHHHhhhhhhh----hcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec
Q 004888 534 RPHLDDKVIVSWNGLVISSFARASKILKSEAES----AMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR 609 (725)
Q Consensus 534 ~P~lDdKiitsWNal~I~aLa~A~~vl~d~~~~----~~~~~~~~~~~~~~yl~~A~~~a~~l~~~l~d~~~G~l~~s~~ 609 (725)
+|-+|-. |+.+.++....+.+.+.... ..|...++.....-|-..-+..++|+.++...|. -.++.. +
T Consensus 141 ~~Q~D~~------g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~v~~~w~~pd-~dlWEe-r 212 (492)
T 2fba_A 141 RPQNDGP------ALRAYAISRYLNDVNSLNEGKLVLTDSGDINFSSTEDIYKNIIKPDLEYVIGYWDSTG-FDLWEE-N 212 (492)
T ss_dssp CCBTTHH------HHHHHHHHHHHHHHHHHSTTCCSSTTCTTCSCSSHHHHHHHTHHHHHHHHHHHTTSCE-ECTTSC-C
T ss_pred Cccccch------hHHHHHHHHHHHHhhccccchhhhhhhccccccccHHHHHHHHHHHHHHHHHhcCCCC-CCCcCc-c
Confidence 4677776 88888888776665442100 0000000000012234788899999987754332 123221 1
Q ss_pred CCCCCCCCCcchHHHHHHHH---HHHHHHcCC----HHHHHHHHHHHHHHHHH---ccccCCCcc
Q 004888 610 NGPSKAPGFLDDYAFLISGL---LDLYEFGSG----TKWLVWAIELQNTQDEL---FLDREGGGY 664 (725)
Q Consensus 610 ~g~~~~~~~leDyA~li~aL---L~LYe~Tgd----~~yL~~A~~L~~~~~~~---F~D~~~Ggy 664 (725)
.| .+..--+.+..|| +++.+..|+ ..|.+.|.++.+.+.++ ||+++.|.|
T Consensus 213 ~g-----~~~~T~~~~~~AL~~aa~lA~~~g~~~~a~~w~~~ad~i~~~I~~~~~~~w~~~~~~f 272 (492)
T 2fba_A 213 QG-----RHFFTSLVQQKALAYAVDIAKSFDDGDFANTLSSTASTLESYLSGSDGGFVNTDVNHI 272 (492)
T ss_dssp EE-----CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHSTTTCCEETTTTEE
T ss_pred CC-----CChHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEE
Confidence 11 2333345555666 445566676 46888888899999888 998764443
No 438
>3ir4_A Glutaredoxin 2; glutathione, IDP00895, structural genomics, for structural genomics of infectious diseases, csgid, oxidoreductase; HET: MSE GSH; 1.20A {Salmonella enterica subsp} PDB: 1g7o_A
Probab=21.07 E-value=1.4e+02 Score=28.13 Aligned_cols=59 Identities=15% Similarity=0.126 Sum_probs=39.7
Q ss_pred EEEeccCChhhHhhhhhccCCHHHHHHHhcCcEEEEEcCCCCcchHHHHHHHHHHhcCCCCcCcEEEecCCCCccc
Q 004888 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 218 (725)
Q Consensus 143 l~~g~~wC~~C~~Me~e~f~d~eVa~~ln~~FV~VkvD~ee~pd~~~~y~~~~q~~~g~~G~P~~vfl~pdG~~i~ 218 (725)
.-++.+.|++|++.. -+.+..+-.|-.+.||..+.+.. ..+++.+-.|..+ +.+|..+.
T Consensus 5 ~Ly~~~~sp~~~~v~-------~~l~~~gi~~~~~~v~~~~~~~~--------~~~~p~~~vP~l~--~~~g~~l~ 63 (218)
T 3ir4_A 5 KLYIYDHCPFCVKAR-------MIFGLKNIPVELNVLQNDDEATP--------TRMIGQKMVPILQ--KDDSRYLP 63 (218)
T ss_dssp EEEECTTCHHHHHHH-------HHHHHHTCCCEEEECCTTCCHHH--------HHHHSSSCSCEEE--CTTSCEEE
T ss_pred EEEcCCCCchHHHHH-------HHHHHcCCceEEEECCCcchhhh--------hhcCCCceeeeEE--EeCCeEee
Confidence 345778999999875 34556666799999988654321 1234677889876 45676654
No 439
>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}
Probab=21.02 E-value=54 Score=31.40 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=23.9
Q ss_pred cCCCCcCcEEEecCCCCcccc-ccccCCCCCCCcchHHHHHHHHH
Q 004888 199 YGGGGWPLSVFLSPDLKPLMG-GTYFPPEDKYGRPGFKTILRKVK 242 (725)
Q Consensus 199 ~g~~G~P~~vfl~pdG~~i~~-~tY~p~~~~~~~~~F~~~L~~i~ 242 (725)
.|+.|+|++||- .+|+.+.. .+|.|++ .|+++++++.
T Consensus 165 ~gv~g~Pt~~v~-~~~~~~~~~~g~~~~e------~~~~~i~~~~ 202 (208)
T 3kzq_A 165 LGVNSYPSLVLQ-INDAYFPIEVDYLSTE------PTLKLIRERI 202 (208)
T ss_dssp TTCCSSSEEEEE-ETTEEEEECCCSSCSH------HHHHHHHHHH
T ss_pred cCCCcccEEEEE-ECCEEEEeeCCCCCHH------HHHHHHHHHH
Confidence 489999999864 45655433 3566654 5666666554
No 440
>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8
Probab=20.84 E-value=5.3e+02 Score=28.67 Aligned_cols=105 Identities=16% Similarity=0.141 Sum_probs=59.3
Q ss_pred CcchHHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHHHHHccccC-CCcccccC---CCCCcc-------------c
Q 004888 618 FLDDYAFLISGLLDLYEFGSGT-----KWLVWAIELQNTQDELFLDRE-GGGYFNTT---GEDPSV-------------L 675 (725)
Q Consensus 618 ~leDyA~li~aLL~LYe~Tgd~-----~yL~~A~~L~~~~~~~F~D~~-~Ggyf~t~---~~~~~~-------------~ 675 (725)
-+|-.|+.+.++-..|+.|||. .|.+..+.+++.+.+...++. .|-|-+.- ...+++ +
T Consensus 178 ElDSla~~L~la~~Yy~~TgD~~~f~~~w~~av~~il~~l~~eq~~~~~~~~Y~F~r~t~~~~dtl~~~G~G~pv~~tGL 257 (489)
T 2p0v_A 178 EIDSLCYPIRLAYHYWKTTGDASVFSDEWLQAIANVLKTFKEQQRKDDAKGPYRFQRKTERALDTMTNDGWGNPVKPVGL 257 (489)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCTTSSHHHHHHHHHHHHHHHHTTCSSCSSCSCCCCCCBSCGGGSCHHHHTCSCCCCSSC
T ss_pred hhhhhHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHhcccCCCCCceEeecCCCcccccccCCCCCccCCCCc
Confidence 3556799999999999999965 556777888888877665432 25453311 000011 1
Q ss_pred ccc-ccCCCCCC-----CChHHHHHHHHHHHHHhhC---CCC--chHHHHHHHHHHHH
Q 004888 676 LRV-KEDHDGAE-----PSGNSVSVINLVRLASIVA---GSK--SDYYRQNAEHSLYL 722 (725)
Q Consensus 676 ~r~-k~~~D~a~-----PS~Nsv~a~~LlrL~~~t~---~~~--~~~y~~~A~~~l~~ 722 (725)
++. .-+.|.+| -.+|+.+...|-+++++.. ++. ...+++.|++|=+.
T Consensus 258 i~S~fRPSDDa~~yg~~ipSN~~a~v~L~~aaeia~~v~~d~~la~~~~~lA~eI~~g 315 (489)
T 2p0v_A 258 IASAFRPSDDATTFQFLVPSNFFAVTSLRKAAEILNTVNRKPALAKECTALADEVEKA 315 (489)
T ss_dssp CCCSBCTTSCBCSSSEEHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred eeCCCCCCCcchhcCcchHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 000 01123332 2378888888887776653 210 13466666665443
Done!