BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004889
(725 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DDU|A Chain A, Prolyl Oligopeptidase With Gsk552
Length = 709
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 622 RVDGEWSVEKVLQSIIINCRSWRGDGLKMFTRLYFSYEQE 661
+VDG + VL+ + +C +W DG MF Y SY Q+
Sbjct: 156 KVDGAKELPDVLERVKFSCMAWTHDGKGMF---YNSYPQQ 192
>pdb|1E5T|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant
Length = 710
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 622 RVDGEWSVEKVLQSIIINCRSWRGDGLKMFTRLYFSYEQESHPEE 666
+VDG + VL+ + +C +W DG MF Y + +S E
Sbjct: 157 KVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201
>pdb|1O6F|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 622 RVDGEWSVEKVLQSIIINCRSWRGDGLKMFTRLYFSYEQESHPEE 666
+VDG + VL+ + +C +W DG MF Y + +S E
Sbjct: 157 KVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201
>pdb|1VZ2|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y73c/v427c/c255t
Mutant
Length = 710
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 622 RVDGEWSVEKVLQSIIINCRSWRGDGLKMFTRLYFSYEQESHPEE 666
+VDG + VL+ + +C +W DG MF Y + +S E
Sbjct: 157 KVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201
>pdb|1H2X|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
pdb|1H2Y|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
With Covalently Bound Inhibitor Z-Pro-Prolinal
Length = 710
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 622 RVDGEWSVEKVLQSIIINCRSWRGDGLKMFTRLYFSYEQESHPEE 666
+VDG + VL+ + +C +W DG MF Y + +S E
Sbjct: 157 KVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201
>pdb|1E8M|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Inhibitor
pdb|1E8N|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Peptide
pdb|1UOO|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Arg-Pro
pdb|1UOP|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Glu-Pro
pdb|1UOQ|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Glu-Phe-Ser-Pro
pdb|1H2Z|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 622 RVDGEWSVEKVLQSIIINCRSWRGDGLKMFTRLYFSYEQESHPEE 666
+VDG + VL+ + +C +W DG MF Y + +S E
Sbjct: 157 KVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201
>pdb|1O6G|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641n Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 622 RVDGEWSVEKVLQSIIINCRSWRGDGLKMFTRLYFSYEQESHPEE 666
+VDG + VL+ + +C +W DG MF Y + +S E
Sbjct: 157 KVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201
>pdb|4AX4|A Chain A, Prolyl Oligopeptidase From Porcine Brain, H680a Mutant
Length = 710
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 622 RVDGEWSVEKVLQSIIINCRSWRGDGLKMFTRLYFSYEQESHPEE 666
+VDG + VL+ + +C +W DG MF Y + +S E
Sbjct: 157 KVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201
>pdb|1QFS|A Chain A, Prolyl Oligopeptidase From Porcine Muscle With Covalently
Bound Inhibitor Z-Pro-Prolinal
pdb|1H2W|A Chain A, Prolyl Oligopeptidase From Porcine Brain
pdb|3EQ7|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ8|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ9|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|2XDW|A Chain A, Inhibition Of Prolyl Oligopeptidase With A Synthetic
Unnatural Dipeptide
pdb|4AMY|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-1
pdb|4AMZ|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-2
pdb|4AN0|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-3
pdb|4AN1|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-4
Length = 710
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 622 RVDGEWSVEKVLQSIIINCRSWRGDGLKMFTRLYFSYEQESHPEE 666
+VDG + VL+ + +C +W DG MF Y + +S E
Sbjct: 157 KVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201
>pdb|1VZ3|A Chain A, Prolyl Oligopeptidase From Porcine Brain, T597c Mutant
Length = 710
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 622 RVDGEWSVEKVLQSIIINCRSWRGDGLKMFTRLYFSYEQESHPEE 666
+VDG + VL+ + +C +W DG MF Y + +S E
Sbjct: 157 KVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201
>pdb|2RA5|A Chain A, Crystal Structure Of The Putative Transcriptional
Regulator From Streptomyces Coelicolor
Length = 247
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 127 LHLSLDESEPLPKEFVLDQNIENLVMHSVLS 157
L LS+D S P+P F L Q +E + H L+
Sbjct: 5 LDLSVDRSSPVPLYFQLSQQLEAAIEHGALT 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,362,303
Number of Sequences: 62578
Number of extensions: 730283
Number of successful extensions: 1357
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1347
Number of HSP's gapped (non-prelim): 11
length of query: 725
length of database: 14,973,337
effective HSP length: 106
effective length of query: 619
effective length of database: 8,340,069
effective search space: 5162502711
effective search space used: 5162502711
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)