Query 004889
Match_columns 725
No_of_seqs 193 out of 225
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 14:34:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004889.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004889hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2225 Proteins containing re 100.0 6E-140 1E-144 1111.0 30.1 646 1-696 1-693 (695)
2 PF09742 Dymeclin: Dyggve-Melc 100.0 2E-129 3E-134 1135.1 49.2 627 1-675 1-678 (678)
3 KOG2226 Proteins containing re 100.0 4.9E-85 1.1E-89 721.1 28.7 496 1-599 1-553 (786)
4 PF12722 Hid1: High-temperatur 100.0 3.4E-84 7.5E-89 772.6 29.3 503 1-598 1-600 (895)
5 PF08427 DUF1741: Domain of un 97.5 0.00058 1.3E-08 71.4 10.9 192 460-671 7-225 (237)
6 KOG4654 Uncharacterized conser 96.3 0.016 3.5E-07 58.1 8.1 98 555-653 98-222 (252)
7 PF03224 V-ATPase_H_N: V-ATPas 48.2 1E+02 0.0022 33.4 9.6 123 375-524 169-296 (312)
8 PF15469 Sec5: Exocyst complex 39.8 1.8E+02 0.0039 28.9 9.1 148 483-640 13-166 (182)
9 KOG1077 Vesicle coat complex A 32.0 1.3E+02 0.0028 36.8 7.3 141 375-588 389-529 (938)
10 KOG0928 Pattern-formation prot 18.2 2.2E+02 0.0047 37.2 6.2 110 508-680 609-721 (1386)
No 1
>KOG2225 consensus Proteins containing regions of low-complexity [General function prediction only]
Probab=100.00 E-value=5.6e-140 Score=1111.02 Aligned_cols=646 Identities=29% Similarity=0.500 Sum_probs=568.8
Q ss_pred CCCCCCcccccCCCCcchhHHHHHhhhCCccCCCCchHHHHhccCCCCCCCCcc---------hhHHHHHHHhhhcCCCc
Q 004889 1 MGGVPSTPRFADSRPQDTAEYLIATFVGEKSFPLASDFWQKLLELPLSLHWPSH---------RVHQACEAFAQNNCYTR 71 (725)
Q Consensus 1 MG~~~Sk~~f~~~~~~~~n~~l~~rls~~~~I~~~D~FW~q~ws~p~s~~~p~d---------~~~~~~~~l~~nn~~t~ 71 (725)
||...||-. ++.+|.|| +||+|.++...+|||||++++++ +..|.| ++++.||.|..|+.+||
T Consensus 1 mg~~itk~~-----~l~~n~~l-kk~~g~~~~~d~d~fwn~ll~~~--l~~~d~~ed~i~les~ld~~~q~~~~n~~~tg 72 (695)
T KOG2225|consen 1 MGSVITKET-----VLQENIYL-KKLSGLEPVDDYDPFWNKLLSFS--LKFDDDDEDRIALESALDDHLQCLMYNTQTTG 72 (695)
T ss_pred CCcccchhh-----hcchhHHH-HHhcCCCcCccccHHHHhhhhee--eecCCCcHHHhhhHHHHHHHHHHHhcCCcccC
Confidence 999999976 78999999 99999999888999999999995 465543 78999999999999999
Q ss_pred cHHHHHHHHHHHHHHhhhCCCCChH-HHHHHHHHHHHHHHhhhhhhccCChhhHHHhhhccCCC--------------CC
Q 004889 72 HLAKILIHLTWCLQECISSSGTASV-AIMKAINAVYISSVFLKYLIENAESENFEELHLSLDES--------------EP 136 (725)
Q Consensus 72 Nl~tLi~~~~~rl~~l~~~~~~~~~-~~~qalNclriLtrilp~l~E~~~~~~w~~~fw~~~~~--------------e~ 136 (725)
||+++|..+.+|..|+++++++.+. ..||+.||++|||.+.+|+-|.++|.++.+.|-....+ |+
T Consensus 73 nf~a~i~~fl~r~tel~t~~~~e~~~~~wqt~nal~ilr~i~r~l~q~~te~e~~~~f~~~~~s~~~ess~~~~~~~~~d 152 (695)
T KOG2225|consen 73 NFAAFIRLFLRRATELKTSEQCENKIYLWQTSNALLILRYIARFLTQRMTEKEFVRIFAKSHESTETESSSTSSSSDEED 152 (695)
T ss_pred cHHHHHHHHHHHHHhhcchHhhhcceeehhhccHHHHHHHHHHHHHhhccHHHHHHHHHhCcchhhhhhhhhcccCCccc
Confidence 9999999999999999999866654 48999999999999999999999998765444322111 00
Q ss_pred CCC------------CC---cchhhHHHHHHHhhhhcceecCCCchhhhHHHHHHHHHHHHhchhcCCCCCCCCCCCchh
Q 004889 137 LPK------------EF---VLDQNIENLVMHSVLSFIALVDVSPHTYNLHQELLNFMLVAMSTQLLSVPSLGPKDVHPF 201 (725)
Q Consensus 137 ~~~------------~f---~~~~~~E~ll~~~lv~~l~~~p~~~~t~~~r~EvLrlLLvllS~qLy~~~~~~~~~~~~~ 201 (725)
... .+ ....++|++ .+++|.+++.+|+++.|+.+|+|++|||+|++|+|||... +.+.+..
T Consensus 153 ~~~~~~e~~~~~~a~~~~~iv~~~~~e~f-~~~lv~ili~i~v~e~t~~ih~eav~~l~tlLS~qLf~~~---~~~~SIv 228 (695)
T KOG2225|consen 153 DDEQKSENENNNGATKYIPIVFQNTAEEF-TYELVSILINISVNETTLAIHVEAVRCLLTLLSSQLFNES---IVNTSIV 228 (695)
T ss_pred chhHHhhccccCCccccceEEecccHHHH-HHHHHHheEEeeccceeehhhHHHHHHHHHHHHHHHhhhc---cccceeE
Confidence 000 02 335789999 8999999999999999999999999999999999999985 3345666
Q ss_pred HHHHhcc-CCcchHHHHHHHHHHhhcCCCCCCCCCcccccccCCCCcchhhhcccccccccccccccccCC----CCCCc
Q 004889 202 IDAAMTE-ESSLVCSVVRRLLLNYITRPRISVNSSSYSIFSEENQPGVLQRVGSAAATIVLLPFNYLVSSN----GEGSS 276 (725)
Q Consensus 202 ~~~~~~~-~~~~~~~Ll~SLL~n~i~~~~~p~~~~~y~~~~d~~~~gil~~~gs~aa~~~~lPy~~l~~~~----~~~~~ 276 (725)
.++++.+ +.+|+..|+++||.|+++++++|.. .+..+.+||+++|++++.|++|.+-....+.++ +.+-.
T Consensus 229 fr~~~~g~C~~ha~~L~ktLL~n~~r~~~~pH~-----~~q~s~~Gs~vfGlAss~~siftv~~~~gi~~~~aa~~peLs 303 (695)
T KOG2225|consen 229 FRFFIDGSCAKHAASLTKTLLLNYLRHNSEPHM-----TVQKSQEGSIVFGLASSMWSIFTVQMATGIDSAEAAKKPELS 303 (695)
T ss_pred EEeeecCchHHHHHHHHHHHHHHHHHhcCCCcc-----cccCCCCCceeeehhhHHHHHHHhhhccCcchhhhccCCCCC
Confidence 6677764 6789999999999999999998764 234556678999999998887766653333322 12345
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCCcccccCCCCCCCccccccCCCCCCCChHHHHhhhccccccccccccCCCCCC-Ccc
Q 004889 277 NPLTDCSLLVLLVLIHYHKCVENDESITDRSDDSATSDSLAKSSTHFTVNPYCNALENARDIEFGHMDLEGNAHSG-PVV 355 (725)
Q Consensus 277 ~pL~~~sl~lLLVLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Npfr~~L~~~~D~qf~~~~~~~~~~~~-~~~ 355 (725)
.||+++|+++||+|.+|++. . ..||||+.|+.++|.|+. ..-|..| ..|
T Consensus 304 ~PLaNqSlLLlL~Lsnh~~a----------------~----------dsNpyr~tl~sf~n~qds----s~~P~qg~vsF 353 (695)
T KOG2225|consen 304 LPLANQSLLLLLNLSNHQPA----------------N----------DSNPYRETLASFQNAQDS----STLPTQGIVSF 353 (695)
T ss_pred ccccchhHHHHHHHhcCCCc----------------c----------cCCHHHHHHHHhhccccc----CCCCCCCceEE
Confidence 69999999999999999542 1 349999999999999962 2223333 389
Q ss_pred cccchhHHHHhhhccCchhHHHHHHHHhhcCccchhhhhcccChhhhHHHHHHHHHhcccCCCCchHHHHHHHHHhcCCc
Q 004889 356 RLPFASLFDTLGMYLADETAVLLLYSLVQGNSGFLEYVLVRTDLDTLLMPILETLYNASKKTPNQIYMLLIILLILSQDS 435 (725)
Q Consensus 356 ~I~f~~l~~~~~~~~~~~e~~lLLy~LL~~N~~F~~yvl~~~d~~~ll~piL~~ly~~~~~~s~~v~m~l~ILLiLS~d~ 435 (725)
+|+|+++|+++|.+..+++.++|||.|||.|++||+||++|.|++++|+|||++||++++++||||||++|+|||||+|+
T Consensus 354 qIdfn~lYe~LC~~~t~dqatLLLY~LLh~Ns~fr~yvl~r~dlEnLVvPiL~iLy~a~~~NSHHvYmaLIvlLILsEDd 433 (695)
T KOG2225|consen 354 QIDFNGLYERLCATATQDQATLLLYMLLHANSGFRNYVLSRIDLENLVVPILRILYDATSNNSHHVYMALIVLLILSEDD 433 (695)
T ss_pred EEehHHHHHHHHHHhccchhHHHHHHHHhccccHHHHHHhhccHHHhHHHHHHHHhcCCcCCccchHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccccCCCcccccccccccCchhHHHHHHHHHHhhhcccccccccchhHHHHHhhhchhcccCCHHHHHHHHHH
Q 004889 436 SFNASIHKMILPSVPWYKEHLLHQTSLGSLLVIILIRTVKYNLSKLRDVYLHTTCLATLANMAPHVHRLSAYASQRLVSL 515 (725)
Q Consensus 436 ~F~~~ln~~~l~~ipw~~er~l~~~SlgdLlIlvl~r~I~~n~~~l~d~ylht~cLaiLaN~Spy~~~Ls~~asqRLv~L 515 (725)
+|||.+|+.+++++.||+||.++++|+|+++|+|++|+|||||.|+||+||||||||+|||||.+|++||+|+||||++|
T Consensus 434 gFnk~iHe~mlKnitWyser~v~EISLGglliLvviRtIQyNmlktRDkYLHTNCLAALANMSa~Fr~LhpyvaQRliSL 513 (695)
T KOG2225|consen 434 GFNKIIHETMLKNITWYSERSVREISLGGLLILVVIRTIQYNMLKTRDKYLHTNCLAALANMSAFFRNLHPYVAQRLISL 513 (695)
T ss_pred hhhHHHHHHHHhhccceecceeeeeeccceeeeeeHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHhhhhcccc-cCCCCcCC-chhhhhhhhhhhHHHHHHHHHHHHHHHHhhcCCCCcchhhHHhhcccccccc
Q 004889 516 FYMLSRKYNKIADRRDDK-KGNLTEQD-SFAEDMSAELHIYTDFLRIVLEILNAILTYALPRNPEQVVYAILHREEVFQP 593 (725)
Q Consensus 516 f~~lS~~~~~l~~~~~~~-~~~~~~~~-~~~~d~~~el~~~~~~L~~lLEiiNsiL~~ql~~Np~~LVYalL~~r~~F~~ 593 (725)
|+.++||+.|+.++++.+ .+....++ +..+|+.+|++++++++||+||||||||++++++||| |||++||||.+|++
T Consensus 514 f~lLtkkH~k~~~q~~~s~~~~v~~nvst~P~d~~qDl~vlEEviRm~LEIiNScLtn~L~hnpn-LvY~LLYkR~lFe~ 592 (695)
T KOG2225|consen 514 FDLLTKKHAKMVDQMRVSSQNDVADNVSTQPIDFHQDLTVLEEVIRMLLEIINSCLTNGLRHNPN-LVYNLLYKRALFEA 592 (695)
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCCCCchhhHhhHHHHHHHHHHHHHHHHHHhhCccccCch-HHHHHHHHHHHHHH
Confidence 999999999999988764 22232332 3445899999999999999999999999999999999 99999999999999
Q ss_pred ccCCccHHHHHhhHHHHHHhhhhhhhccccCCCCCHHHHHHHHHHhcccCCCCCCCCCCCCceeeeeCCCCCCccchhhH
Q 004889 594 FKSHPRFNELLENIYTVLDFFNSRLDAQRVDGEWSVEKVLQSIIINCRSWRGDGLKMFTRLYFSYEQESHPEEFFIPYVW 673 (725)
Q Consensus 594 l~~hp~f~~~~~Ni~~vi~~f~~~l~~~~~~~~~s~~~vl~~I~~~~~~~~~~~l~~f~~l~F~YeEe~~~~eFF~PyvW 673 (725)
||+||+|||++|||+.|++||++|+.+-.++ ..++++|++|.+++..||+|||.|||||||+|+||+.|+|||+||||
T Consensus 593 fr~Hp~FQD~lqNId~V~~~fssk~~~V~e~--~g~~~~L~ii~k~a~~w~tdrl~kfpelkfryvede~~~dffvpyvw 670 (695)
T KOG2225|consen 593 FRQHPMFQDLLQNIDAVISHFSSKVIHVPEG--DGGSTMLQIIEKEANIWPTDRLAKFPELKFRYVEDEYTVDFFVPYVW 670 (695)
T ss_pred HhhChhHHHHHHHHHHHHHhhhhheeecccc--ccchhHHHHHhcccccCchhhhhhCcccceeeecccCchhheeeeeE
Confidence 9999999999999999999999999874433 47899999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCccccCCCcccccCCC
Q 004889 674 QLVLSRCGFSFNPSAINLFPVDL 696 (725)
Q Consensus 674 ~~v~~~~g~~w~~~~i~lf~~~~ 696 (725)
+++++++|+||.++.|++|.+++
T Consensus 671 ~l~~q~~~i~f~t~~ik~~~~~~ 693 (695)
T KOG2225|consen 671 RLSVQHSGIYFETSRIKIFNAQS 693 (695)
T ss_pred EEEEeeceEEEecceeeeeeccc
Confidence 99999999999999999999875
No 2
>PF09742 Dymeclin: Dyggve-Melchior-Clausen syndrome protein; InterPro: IPR019142 Dymeclin (Dyggve-Melchior-Clausen syndrome protein) contains a large number of leucine and isoleucine residues and a total of 17 repeated dileucine motifs. It is characteristically about 700 residues long and present in plants and animals. In humans, mutations in the gene coding for this protein give rise to a disorder called Dyggve-Melchior-Clausen syndrome (DMC, MIM 223800), which is an autosomal-recessive disorder characterised by the association of spondylo-epi-metaphyseal dysplasia and mental retardation []. This entry also includes Hid1 (high-temperature-induced dauer-formation protein 1) from Caenorhabditis elegans which encodes a novel highly conserved putative transmembrane protein expressed in neurons []. It contains up to seven potential transmembrane domains separated by regions of low complexity. Functionally this protein might be involved in vesicle secretion or be an inter-cellular signalling protein or be a novel insulin receptor [].
Probab=100.00 E-value=1.5e-129 Score=1135.14 Aligned_cols=627 Identities=41% Similarity=0.646 Sum_probs=557.9
Q ss_pred CCCCCCcccccCCCCcchhHHHHHhhhCCccCC-CCchHHHHhccCCCCCCCCcc--------hhHHHHHHHhhhcCCCc
Q 004889 1 MGGVPSTPRFADSRPQDTAEYLIATFVGEKSFP-LASDFWQKLLELPLSLHWPSH--------RVHQACEAFAQNNCYTR 71 (725)
Q Consensus 1 MG~~~Sk~~f~~~~~~~~n~~l~~rls~~~~I~-~~D~FW~q~ws~p~s~~~p~d--------~~~~~~~~l~~nn~~t~ 71 (725)
||++.||.. +++.|+++ +|++|+++|| .+|+||+|||++|.+++++.+ +++++|+.+++||++||
T Consensus 1 MGa~~S~~~-----~l~~~~~l-~~l~g~~~i~~~~d~FW~qLlsf~~~~p~~s~d~~~ll~~~~~~~~~~L~~nN~~Tg 74 (678)
T PF09742_consen 1 MGASSSKEA-----KLSFNEAL-KRLVGEQPIPPDDDPFWNQLLSFSISPPTSSEDQFELLEEALEPLCQSLVPNNLATG 74 (678)
T ss_pred CCCCcCCcc-----cchhHHHH-HHhcCCCCCCCcchHHHHHHHcccCCCCCChHHHHHHhHHHHHHHHHhhcccCcccc
Confidence 999999866 67889987 9999999999 677999999999865555443 67899999999999999
Q ss_pred cHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhhhhhhccCChhhHHHhhhccCCCCC-C--CC---------
Q 004889 72 HLAKILIHLTWCLQECISSSGTASVAIMKAINAVYISSVFLKYLIENAESENFEELHLSLDESEP-L--PK--------- 139 (725)
Q Consensus 72 Nl~tLi~~~~~rl~~l~~~~~~~~~~~~qalNclriLtrilp~l~E~~~~~~w~~~fw~~~~~e~-~--~~--------- 139 (725)
|+++|++++.+|+.++..++...+ ++||+||+||++||++|++++++|.++||+..+.+. . +.
T Consensus 75 n~~~Li~~~l~~~~el~~s~~~~~-----~~Nal~ilr~~lkyliE~~se~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~ 149 (678)
T PF09742_consen 75 NFRALIRVFLSRLSELKASSECQD-----AINALFILRRFLKYLIENGSEEELLGHFWHPDPSEGSRPLASSLFSALSDL 149 (678)
T ss_pred CHHHHHHHHHHHHhhhhcccchhH-----HHHHHHHHHHHHHHHhhcCCHHHHHHHHhcCCCcccccccccchhhhhccc
Confidence 999999999999999999886665 999999999999999999999999999999876411 0 00
Q ss_pred -----------------CCcchhhHHHHHHHhhhhcceecCCCchhhhHHHHHHHHHHHHhchhcCCCCCCCCCCCchhH
Q 004889 140 -----------------EFVLDQNIENLVMHSVLSFIALVDVSPHTYNLHQELLNFMLVAMSTQLLSVPSLGPKDVHPFI 202 (725)
Q Consensus 140 -----------------~f~~~~~~E~ll~~~lv~~l~~~p~~~~t~~~r~EvLrlLLvllS~qLy~~~~~~~~~~~~~~ 202 (725)
+...++.+|++ |++++++++++|+++.||.+|+|++||||||+|+|||++++..+ .++|+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l-~~alv~~i~~~p~~~~t~~lh~E~l~lLLvllS~qLy~~~~~~~--~~~~~ 226 (678)
T PF09742_consen 150 LFCPDFTVMSKSEEGSESLSSEDSAEYL-LEALVGFIVSVPVNDATYALHLEALNLLLVLLSSQLYHPPSSEQ--SSPFL 226 (678)
T ss_pred ccccchhhhccccccccccccccHHHHH-HHHhcccccCCCCchhHHHHHHHHHHHHHHHHHHHHcCCCcccc--ccHHH
Confidence 11245888999 99999999999999999999999999999999999999976544 79999
Q ss_pred HHHhccCCcchHHHHHHHHHHhhcCCCCCCCCCcccccccCCCCcchhhhcccccccccccccccccCCCCCCcchHHHH
Q 004889 203 DAAMTEESSLVCSVVRRLLLNYITRPRISVNSSSYSIFSEENQPGVLQRVGSAAATIVLLPFNYLVSSNGEGSSNPLTDC 282 (725)
Q Consensus 203 ~~~~~~~~~~~~~Ll~SLL~n~i~~~~~p~~~~~y~~~~d~~~~gil~~~gs~aa~~~~lPy~~l~~~~~~~~~~pL~~~ 282 (725)
+.+|+++++++..++|+||+|+++|.++|.+ .+|.++.++.|+|+++|+|+++|+.+...+ .......++.++||+++
T Consensus 227 ~~~~~~~s~~a~~l~~sLL~~~~~~~~~~~~-~~~~l~~~~~~~s~l~gi~s~~~s~l~~~~-~~~~~~~~~~~~pLa~~ 304 (678)
T PF09742_consen 227 DSLMSSCSPHASALVRSLLNNFIRQDPVPPP-YTHLLFSDGSQGSILYGIASASWSLLDNFY-GSSPSSSEESRSPLANQ 304 (678)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhcCCcccc-cccccccCCCCchHHHHHHHHHHHHhhccc-cccccCcccCcCCHHHH
Confidence 9999988999999999999999999998873 356678888999999999999888663232 33344455789999999
Q ss_pred HHHHHHHHhcCCCCCCCCcccccCCCCCCCccccccCCCCCCCChHHHHhhhcccccc--ccccccCCCC-CCCcccccc
Q 004889 283 SLLVLLVLIHYHKCVENDESITDRSDDSATSDSLAKSSTHFTVNPYCNALENARDIEF--GHMDLEGNAH-SGPVVRLPF 359 (725)
Q Consensus 283 sl~lLLVLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Npfr~~L~~~~D~qf--~~~~~~~~~~-~~~~~~I~f 359 (725)
|+++||||++|+++. + ...||||.+|..+.|.++ ....+.+.+. ....++|+|
T Consensus 305 SllLLLvL~~~~~~~---------------~---------~~~Np~r~al~~~~d~~~~~~~~~~~~~~~~~~~~~~i~f 360 (678)
T PF09742_consen 305 SLLLLLVLVNHCSPP---------------S---------SKGNPYREALFSFSDIQDEDFDFDSSGISSSLVNSFKINF 360 (678)
T ss_pred HHHHHHHHHcCCCcc---------------c---------cCCChHHHHHHhhhcchhccccccccccccccccceeecH
Confidence 999999999996641 1 168999999999998876 1111222222 234799999
Q ss_pred hhHHHHhhhccCchhHHHHHHHHhhcCccchhhhhcccChhhhHHHHHHHHHhcccC--CCCchHHHHHHHHHhcCCchh
Q 004889 360 ASLFDTLGMYLADETAVLLLYSLVQGNSGFLEYVLVRTDLDTLLMPILETLYNASKK--TPNQIYMLLIILLILSQDSSF 437 (725)
Q Consensus 360 ~~l~~~~~~~~~~~e~~lLLy~LL~~N~~F~~yvl~~~d~~~ll~piL~~ly~~~~~--~s~~v~m~l~ILLiLS~d~~F 437 (725)
..||+++|+.+.+++.++|||.|||.|++|++||++|+|++++|+|||+++|+++++ .+||+||++||||+||||++|
T Consensus 361 ~~L~~s~~~~~~~~~~~lLLY~LL~~N~~F~~~vls~~d~~~lv~piL~~ly~~~~~~~~~~~~~m~l~iLLiLSqd~~f 440 (678)
T PF09742_consen 361 TALYNSLCKSLSHDELLLLLYKLLHRNPNFLNYVLSRSDLDNLVLPILQILYDAREDFSNSHHIYMALIILLILSQDDSF 440 (678)
T ss_pred HHHHHHHHHhhCCcchHHHHHHHHhcCHHHHHHHhcchhHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHHcCchHH
Confidence 999999999999999999999999999999999999999999999999999999999 889999999999999999999
Q ss_pred hhhhcccccCCCcccccccccccCchhHHHHHHHHHHhhhcccccccccchhHHHHHhhhchhcccCCHHHHHHHHHHHH
Q 004889 438 NASIHKMILPSVPWYKEHLLHQTSLGSLLVIILIRTVKYNLSKLRDVYLHTTCLATLANMAPHVHRLSAYASQRLVSLFY 517 (725)
Q Consensus 438 ~~~ln~~~l~~ipw~~er~l~~~SlgdLlIlvl~r~I~~n~~~l~d~ylht~cLaiLaN~Spy~~~Ls~~asqRLv~Lf~ 517 (725)
|+++|+++++++|||+||.+.++|+|||+|+|++|+|++|+.|++|+|||++|||+|+|||||+++||+|||||||+||+
T Consensus 441 ~~~~~~~~~~~~~w~~er~~~~~Slg~Llvlvl~r~i~~n~~~~~d~~L~~~~la~LaN~sp~~~~l~~y~aqrLv~L~~ 520 (678)
T PF09742_consen 441 NRSLHETIIKNVPWYTERSLFEISLGSLLVLVLIRTIQYNLSRLRDEYLHTNCLAILANMSPYFKSLHPYAAQRLVSLLE 520 (678)
T ss_pred HHHhhhcccCCCCccccccccccCHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhccHhhcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHhhhhcccccCCCCcCCchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcCCCCcchhhHHhhccccccccccC-
Q 004889 518 MLSRKYNKIADRRDDKKGNLTEQDSFAEDMSAELHIYTDFLRIVLEILNAILTYALPRNPEQVVYAILHREEVFQPFKS- 596 (725)
Q Consensus 518 ~lS~~~~~l~~~~~~~~~~~~~~~~~~~d~~~el~~~~~~L~~lLEiiNsiL~~ql~~Np~~LVYalL~~r~~F~~l~~- 596 (725)
.++||++|+++......++..+. .+++.+++++||+||||||+||+|++++||+ |||+|||+|++|+++++
T Consensus 521 ~ls~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~lr~lleiins~L~~~l~~N~~-LvY~ll~~r~~f~~~~~l 592 (678)
T PF09742_consen 521 LLSKKYFKLSSQANHSSGSSRTS-------DDDLQVLEEVLRLLLEIINSILTYQLRHNPN-LVYALLYKREVFEQLRNL 592 (678)
T ss_pred HHHHHHHHHHhhhhccccccccc-------hhhHHHHHHHHHHHHHHHHHHHhcccccCHH-HHHHHHHHHHHHHHHHhh
Confidence 99999999998765433222221 1236899999999999999999999999999 99999999999999999
Q ss_pred -----CccHHHH-HhhHHHHHHhhhhhhhccccCC-CCCHHHHHHHHHHhcccCCCCCCCCCCCCceeeeeCCCCCCccc
Q 004889 597 -----HPRFNEL-LENIYTVLDFFNSRLDAQRVDG-EWSVEKVLQSIIINCRSWRGDGLKMFTRLYFSYEQESHPEEFFI 669 (725)
Q Consensus 597 -----hp~f~~~-~~Ni~~vi~~f~~~l~~~~~~~-~~s~~~vl~~I~~~~~~~~~~~l~~f~~l~F~YeEe~~~~eFF~ 669 (725)
||.|+++ +|||++||+||+++|++.+.++ +||+++||++|++++..|+.+++|+||+++|+||||++|++||+
T Consensus 593 ~~~~~~~~~~~~~l~ni~~vi~~f~~~v~~~~~~~~~~s~~~vl~~i~~~~~~~~~~~~~~~~~l~f~Y~e~~~~~~ff~ 672 (678)
T PF09742_consen 593 DPVSIHPWFQDLPLQNIDRVIQFFSSRVESICADKGELSVSEVLEVIRKGTLVWPTDPLKKFPELKFKYEEEEQPEEFFI 672 (678)
T ss_pred ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHhhhhcCCCCCCCCCCceEEeecCCCccccee
Confidence 9999999 9999999999999999855543 39999999999999999999999999999999999999999999
Q ss_pred hhhHHH
Q 004889 670 PYVWQL 675 (725)
Q Consensus 670 PyvW~~ 675 (725)
||||++
T Consensus 673 pyvW~~ 678 (678)
T PF09742_consen 673 PYVWSL 678 (678)
T ss_pred eeeeeC
Confidence 999985
No 3
>KOG2226 consensus Proteins containing regions of low-complexity [General function prediction only]
Probab=100.00 E-value=4.9e-85 Score=721.15 Aligned_cols=496 Identities=21% Similarity=0.299 Sum_probs=414.1
Q ss_pred CCCCCCcccccCCCCcchhHHHHHhhhCCccCCCCchHHHHhccCCCCCCCCcc--hhHHHHHHHhhhcCCCccHHHHHH
Q 004889 1 MGGVPSTPRFADSRPQDTAEYLIATFVGEKSFPLASDFWQKLLELPLSLHWPSH--RVHQACEAFAQNNCYTRHLAKILI 78 (725)
Q Consensus 1 MG~~~Sk~~f~~~~~~~~n~~l~~rls~~~~I~~~D~FW~q~ws~p~s~~~p~d--~~~~~~~~l~~nn~~t~Nl~tLi~ 78 (725)
||+++||++|+ +.|.|+. ++.||.+|.||+|||+.|++....=+ ...++.+. +|..+.||||||+
T Consensus 1 MGsqeSKl~Fr---------~aIlrl~-q~~~p~ddeiWe~lWt~peT~~dVF~~i~~~dIR~~---RD~ap~NLatLl~ 67 (786)
T KOG2226|consen 1 MGSQESKLDFR---------HAILRLT-QKNIPEDDEIWEQLWTCPETENDVFAFISAQDIRKC---RDNAPDNLATLLY 67 (786)
T ss_pred CCcccccchHH---------HHHHHHh-cCCCCcHHHHHHHHhcCCCcchHHHHhcCHHHHHHH---hhcChHHHHHHHH
Confidence 99999999997 3346888 88999999999999999853320000 22222222 3345799999999
Q ss_pred HHHHHHHHhhhCCCCCh-HHHHHHHHHHHHHHHhhhhhhccCChhhHHHhhhccCCCC---CCCCC-----------C--
Q 004889 79 HLTWCLQECISSSGTAS-VAIMKAINAVYISSVFLKYLIENAESENFEELHLSLDESE---PLPKE-----------F-- 141 (725)
Q Consensus 79 ~~~~rl~~l~~~~~~~~-~~~~qalNclriLtrilp~l~E~~~~~~w~~~fw~~~~~e---~~~~~-----------f-- 141 (725)
++++||+.+++....|. .....|+||+|+|||++|||+|+.+.++|+++||+..++. ..|.. |
T Consensus 68 v~v~kL~~lqn~~~~p~~~~~~~aLNciRLLTRllPyl~E~~~~~eW~~~Fw~slpk~~d~~~PL~~~llns~~dLlf~~ 147 (786)
T KOG2226|consen 68 VLVEKLVSLQNKFSEPATAKQKCALNCIRLLTRLLPYLFESTNDEEWRDYFWWSLPKTVDDLKPLAASLLNSFSDLLFLP 147 (786)
T ss_pred HHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHhccccHHHHHHHhhhcCcCCCCccCchhHHHHHHHhhhhhcc
Confidence 99999999999875443 3478899999999999999999999999997777665421 12221 1
Q ss_pred ------------------cchhhHHHHHHHhhhhcceecCCCchhhhHHHHHHHHHHHHhchhcCCCCCCCCCCCchhHH
Q 004889 142 ------------------VLDQNIENLVMHSVLSFIALVDVSPHTYNLHQELLNFMLVAMSTQLLSVPSLGPKDVHPFID 203 (725)
Q Consensus 142 ------------------~~~~~~E~ll~~~lv~~l~~~p~~~~t~~~r~EvLrlLLvllS~qLy~~~~~~~~~~~~~~~ 203 (725)
...+.||++ ||+||++-...|-+...+.+|+|++||||||+|+.||...+.. ..+.|.+
T Consensus 148 dfTi~~~~~~~~~~~k~~~siesC~~I-WEaGVg~~et~~~~~~~~~~R~EvLrLLL~lfSe~lY~rsdE~--~ss~~~~ 224 (786)
T KOG2226|consen 148 DFTITLCFQHNFTKIKELSSIESCEYI-WEAGVGIPETPPKPAYDERHRTEVLRLLLVLFSETLYDRSDEL--DSSVLNY 224 (786)
T ss_pred ccchhhhhhcCcchhhhhcchhHHHHH-HhcccCCCCCCCCchHHHHHHHHHHHHHHHHhhHHHHhccccc--CceeEEE
Confidence 123778888 9999998877887778888999999999999999999533322 2457877
Q ss_pred HHhccCCcchHHHHHHHHHHhhcCCCCCCCCCcccccccCCCCcchhhhcccccccccccccccccCCCCCCcchHHHHH
Q 004889 204 AAMTEESSLVCSVVRRLLLNYITRPRISVNSSSYSIFSEENQPGVLQRVGSAAATIVLLPFNYLVSSNGEGSSNPLTDCS 283 (725)
Q Consensus 204 ~~~~~~~~~~~~Ll~SLL~n~i~~~~~p~~~~~y~~~~d~~~~gil~~~gs~aa~~~~lPy~~l~~~~~~~~~~pL~~~s 283 (725)
+++..+++++++++|||+||++++ ||.|+| .|||++.++| +..+|+++|
T Consensus 225 ~~s~ank~lvL~ll~SliNT~~~~--------------~p~~~~--------------~~yn~l~~sd---s~~sLve~~ 273 (786)
T KOG2226|consen 225 IFSSANKRLVLPLLTSLINTVCRY--------------DPVGWK--------------NSYNQLLNSD---SLESLVEYC 273 (786)
T ss_pred EEEecCCceeehhhHHhhhhheec--------------cccccc--------------cccccccccc---hhhhHHHHH
Confidence 777788999999999999988874 665555 7999988888 899999999
Q ss_pred HHHHHHHhcCCCCCCCCcccccCCCCCCCccccccCCCCCCCChHHHHhhhcc---ccccc---cccccCCCC-------
Q 004889 284 LLVLLVLIHYHKCVENDESITDRSDDSATSDSLAKSSTHFTVNPYCNALENAR---DIEFG---HMDLEGNAH------- 350 (725)
Q Consensus 284 l~lLLVLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Npfr~~L~~~~---D~qf~---~~~~~~~~~------- 350 (725)
+|+|||+++|..-+...++.+.+.+.. ...+|.|+.||+|+| ||+|+ ++|+++||.
T Consensus 274 ~qiLli~lDh~~~e~t~~y~~~r~s~g-----------~~~kN~f~~ylSrlhr~~DF~fil~gi~RLL~nPl~s~s~yi 342 (786)
T KOG2226|consen 274 LQILLILLDHRIKENTHLYQNGRSSEG-----------QHIKNYFINYLSRLHRTEDFLFILKGITRLLSNPLKSESQYI 342 (786)
T ss_pred HHHHHHhhccccccCceeccCCcCCCc-----------cchhhHHHHHHHHhccchhHHHHHHHHHHHhcchhhcccccc
Confidence 999999999976443333333221111 247899999999997 89998 799999984
Q ss_pred CCCcccccchhHHHHhhhccCchhHHHHHHHHhhcCccchhhhhcccChhhhHHHHHHHHHhcccCC--CCchHHHHHHH
Q 004889 351 SGPVVRLPFASLFDTLGMYLADETAVLLLYSLVQGNSGFLEYVLVRTDLDTLLMPILETLYNASKKT--PNQIYMLLIIL 428 (725)
Q Consensus 351 ~~~~~~I~f~~l~~~~~~~~~~~e~~lLLy~LL~~N~~F~~yvl~~~d~~~ll~piL~~ly~~~~~~--s~~v~m~l~IL 428 (725)
|.++++..|+ +|.+++||.+|++|+||+.|+++..|+.++++|||++....+.|+ +|++.||+|||
T Consensus 343 ~~s~k~~~~~------------~E~Liflw~~i~yNkrF~~~li~t~~a~d~li~iLy~~~~yr~D~~~~gl~~l~vfil 410 (786)
T KOG2226|consen 343 PNSTKRKRCH------------PELLIFLWLLITYNKRFTDYLIKTSDALDILIPILYHHVKYRGDTERSGLSHLCVFIL 410 (786)
T ss_pred cccchhhhhh------------HHHHHHHHHHHhccHHHHHHHhcCccHHHHHHHHHHHHHHhcCCccccchHHHHHHHH
Confidence 4567888887 889999999999999999999999999999999999998888886 47889999999
Q ss_pred HHhcCCchhhhhhcccc-cC---CCcccccccccccCchhHHHHHHHHHHhhhcccccccccchhH-HHHHhhhchhccc
Q 004889 429 LILSQDSSFNASIHKMI-LP---SVPWYKEHLLHQTSLGSLLVIILIRTVKYNLSKLRDVYLHTTC-LATLANMAPHVHR 503 (725)
Q Consensus 429 LiLS~d~~F~~~ln~~~-l~---~ipw~~er~l~~~SlgdLlIlvl~r~I~~n~~~l~d~ylht~c-LaiLaN~Spy~~~ 503 (725)
+.||+|++||+++|+.. ++ .+|.+ .|||+||+|++++++|++|..++..++ +| |.+|+|++||+++
T Consensus 411 ~~Ls~Ek~f~~rLNk~~sl~~sl~vp~~------~gt~AdllIi~~~~li~~~~~~~s~l~---~~ll~ii~Ni~py~~n 481 (786)
T KOG2226|consen 411 LLLSGEKNFCKRLNKAYSLDKSLIVPVP------TGTYADLLIIVIHKLIAYGKDRLSELF---DCLLTIICNISPYIKN 481 (786)
T ss_pred HHHhhhHHHHHHhcccccccccCCCCCC------CCcccceeEeehhhhhhhcccccchHH---HHHHHHHHhhhhhhcc
Confidence 99999999999999965 22 56777 999999999999999999999999999 99 9999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhHHHhhhhcccccCCCCcCCchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcCCCCcchhhHH
Q 004889 504 LSAYASQRLVSLFYMLSRKYNKIADRRDDKKGNLTEQDSFAEDMSAELHIYTDFLRIVLEILNAILTYALPRNPEQVVYA 583 (725)
Q Consensus 504 Ls~~asqRLv~Lf~~lS~~~~~l~~~~~~~~~~~~~~~~~~~d~~~el~~~~~~L~~lLEiiNsiL~~ql~~Np~~LVYa 583 (725)
|+++||+|||+|++++|+|+|+++++. | +.++++|||+||++||||+++|+| |||.
T Consensus 482 Ls~v~a~kl~eL~ss~S~P~FL~snp~------------------N-----h~ll~~LL~afnniiqy~F~~N~n-LiY~ 537 (786)
T KOG2226|consen 482 LSMVAASKLVELISSFSTPWFLFSNPQ------------------N-----HSLLKYLLEAFNNIIQYQFDGNSN-LIYT 537 (786)
T ss_pred cchhhhHHHHHHHHHhcCchhhccCCC------------------c-----HHHHHHHHHHHHHHHHHhhcCCcc-hhhH
Confidence 999999999999999999999997542 2 489999999999999999999999 9999
Q ss_pred hhccccccccccCCcc
Q 004889 584 ILHREEVFQPFKSHPR 599 (725)
Q Consensus 584 lL~~r~~F~~l~~hp~ 599 (725)
|+|+|++|+++.+.+.
T Consensus 538 iir~k~vF~~l~als~ 553 (786)
T KOG2226|consen 538 IIRKKRVFEALSALST 553 (786)
T ss_pred HHHHHHHHHHHhhcCc
Confidence 9999999999988774
No 4
>PF12722 Hid1: High-temperature-induced dauer-formation protein
Probab=100.00 E-value=3.4e-84 Score=772.63 Aligned_cols=503 Identities=24% Similarity=0.355 Sum_probs=416.6
Q ss_pred CCCCCCcccccCCCCcchhHHHHHhhhCCccC--CCCch-HHHHhccCCCCCCCCcchhHHHHHH------HhhhcCCCc
Q 004889 1 MGGVPSTPRFADSRPQDTAEYLIATFVGEKSF--PLASD-FWQKLLELPLSLHWPSHRVHQACEA------FAQNNCYTR 71 (725)
Q Consensus 1 MG~~~Sk~~f~~~~~~~~n~~l~~rls~~~~I--~~~D~-FW~q~ws~p~s~~~p~d~~~~~~~~------l~~nn~~t~ 71 (725)
||+++||++|| .++ +||++.+.| |.+|+ ||++||+.|. ..+|+++. ..-.+.+++
T Consensus 1 MG~sdsKl~fr--------~~i-~~L~~~~~~~~~~dd~~fw~~fw~~~~-------s~~Dvf~Li~~~diR~ir~~~~~ 64 (895)
T PF12722_consen 1 MGNSDSKLNFR--------KHI-FKLAQERIIVDPDDDAFFWDQFWELPT-------SAEDVFSLISPADIRRIRDENPE 64 (895)
T ss_pred CCchhhHHHHH--------HHH-HHHcCCCcCCCCcccHHHHHHHHcCCC-------CHHHHHhcCCHHHHHHHHHHCHH
Confidence 99999999997 234 899999988 88888 9999999983 33333322 222233459
Q ss_pred cHHHHHHHHHHHHHHhhhCCCCChH--HHHHHHHHHHHHHHhhhhhhccCChhhHHH-hhhccCCCCC------------
Q 004889 72 HLAKILIHLTWCLQECISSSGTASV--AIMKAINAVYISSVFLKYLIENAESENFEE-LHLSLDESEP------------ 136 (725)
Q Consensus 72 Nl~tLi~~~~~rl~~l~~~~~~~~~--~~~qalNclriLtrilp~l~E~~~~~~w~~-~fw~~~~~e~------------ 136 (725)
||++||+++++||.+++++++++++ ..++++||+|||||||||+||.+..++|++ |||+.+....
T Consensus 65 Nl~tLi~~~~~~l~~~~~~~~~~~~~~~~~~~LNciRiLTRilP~i~E~~~~~~~~~~~fW~~~~~~~~~~~~~~~~~~~ 144 (895)
T PF12722_consen 65 NLATLIRKLVERLVQLANSPSFPSTPAPKQELLNCIRILTRILPFIFEADYDEEWEEEFFWSSRPKPSRGAQSASEVLFD 144 (895)
T ss_pred HHHHHHHHHHHHHHHHhcCccccccchhhhHHHHHHHHHHHhhhHhhcccccccchhccccCCCCccccccccccccccc
Confidence 9999999999999999999998653 478999999999999999999888899995 9998764210
Q ss_pred ------CCC-----C-----------Ccc----------hhhHHHHHHHhhhhcceecCC-CchhhhHHHHHHHHHHHHh
Q 004889 137 ------LPK-----E-----------FVL----------DQNIENLVMHSVLSFIALVDV-SPHTYNLHQELLNFMLVAM 183 (725)
Q Consensus 137 ------~~~-----~-----------f~~----------~~~~E~ll~~~lv~~l~~~p~-~~~t~~~r~EvLrlLLvll 183 (725)
.+. + |++ .+.+++++|++|||.-.+.+. +.+.++||+|||||||||+
T Consensus 145 ~~~~~~~~~~~~pLg~~Ll~al~dLLF~~gFTv~~~~~~~~~~~~~iWe~GIg~~~~~~~~~~~~dsNR~EvLrLLLtl~ 224 (895)
T PF12722_consen 145 EASSEEDDEQSPPLGERLLDALVDLLFCPGFTVPSSSSSPDKVSYSIWEPGIGTNTSPPSPNKEHDSNRTEVLRLLLTLF 224 (895)
T ss_pred cccccccccCCCCHHHHHHHHHHHHhCCCCCcCCCccCCCCccceeeccCccccCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 000 0 222 246677679999999888888 8999999999999999999
Q ss_pred chhcCCCCCCCCCCCchhHHHHhccC-CcchHHHHHHHHHHhhcCCCCCCCCCcccccccCCCCcchhhhcccccccccc
Q 004889 184 STQLLSVPSLGPKDVHPFIDAAMTEE-SSLVCSVVRRLLLNYITRPRISVNSSSYSIFSEENQPGVLQRVGSAAATIVLL 262 (725)
Q Consensus 184 S~qLy~~~~~~~~~~~~~~~~~~~~~-~~~~~~Ll~SLL~n~i~~~~~p~~~~~y~~~~d~~~~gil~~~gs~aa~~~~l 262 (725)
|++||.+|+ .....++|+.++++.. ++.+++|+|||||+++++.|..+. .+| +
T Consensus 225 S~~lY~~~~-~~~~~~~~l~~l~s~~~~~~~l~L~~SLlNt~~~y~p~~~~-----------~~~--------------l 278 (895)
T PF12722_consen 225 SEPLYQPPS-LSSTGNKFLTYLVSCTPRQLVLTLLCSLLNTVCRYDPSGNE-----------EWG--------------L 278 (895)
T ss_pred chhhcCCCc-cCCCCCeeeeeeccCcchhhhHHHHHHHHHHHHhcCCCCcc-----------ccc--------------c
Confidence 999999998 7777999998888765 455999999999888876443211 144 8
Q ss_pred cccccccCCCCCCcchHHHHHHHHHHHHhcCCCCCCCCcccccCCCCCCCccccccCCCCCCCChHHHHhhhcc---ccc
Q 004889 263 PFNYLVSSNGEGSSNPLTDCSLLVLLVLIHYHKCVENDESITDRSDDSATSDSLAKSSTHFTVNPYCNALENAR---DIE 339 (725)
Q Consensus 263 Py~~l~~~~~~~~~~pL~~~sl~lLLVLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Npfr~~L~~~~---D~q 339 (725)
||++++++| .+++||++|+|+|+|+++|+.+...........+ ......+|.||+||+|+| ||+
T Consensus 279 pY~~~~~~d---~r~~lV~~slQlL~vlL~y~~~~~~~~~~~~~~~----------~~~~~~~N~~r~yl~~lhr~~D~~ 345 (895)
T PF12722_consen 279 PYNHLVFSD---SREPLVTYSLQLLNVLLDYPPPSQTNSSFSSETN----------LTSSKPKNLFRNYLSKLHREEDFQ 345 (895)
T ss_pred ccccccccC---cccHHHHHHHHHHHHheeCCCCCCCccccccccC----------cCCCCcchHHHHHHhccCcHHHHH
Confidence 999999988 8999999999999999999876433221111000 000358899999999986 899
Q ss_pred cc---cccccCCCC-----------------CCCcccccchhHHHHhhhccCchhHHHHHHHHhhcCccchhhhhcccCh
Q 004889 340 FG---HMDLEGNAH-----------------SGPVVRLPFASLFDTLGMYLADETAVLLLYSLVQGNSGFLEYVLVRTDL 399 (725)
Q Consensus 340 f~---~~~~~~~~~-----------------~~~~~~I~f~~l~~~~~~~~~~~e~~lLLy~LL~~N~~F~~yvl~~~d~ 399 (725)
|+ ++|++++|. |++.+++.|+ +|++||||+|++|||+|++||++ .++
T Consensus 346 fi~~gl~~iL~~pl~~~~~~es~~f~~~~~lp~s~~~~~~~------------~e~l~l~W~l~~~Nk~F~~~v~~-~~~ 412 (895)
T PF12722_consen 346 FILDGLTRILNNPLQSAIEQESNPFSSSSYLPGSQKPSPWA------------QELLMLFWELIQCNKRFRNYVLD-KRA 412 (895)
T ss_pred HHHHHHHHHHHhhhhhhhhccccccccccccccccccchHH------------HHHHHHHHHHHhhCHHHHHHHhh-ccH
Confidence 98 577777763 4567888887 88999999999999999999999 999
Q ss_pred hhhHHHHHHHHHhcccCCC--CchHHHHHHHHHhcCCchhhhhhcccccC----CCcccccccccccCchhHHHHHHHHH
Q 004889 400 DTLLMPILETLYNASKKTP--NQIYMLLIILLILSQDSSFNASIHKMILP----SVPWYKEHLLHQTSLGSLLVIILIRT 473 (725)
Q Consensus 400 ~~ll~piL~~ly~~~~~~s--~~v~m~l~ILLiLS~d~~F~~~ln~~~l~----~ipw~~er~l~~~SlgdLlIlvl~r~ 473 (725)
.++|+|+|+++.+.+.+++ |+++||+||||+||+++.||++||+++-. .+|-+..-....|||+||+|+++|++
T Consensus 413 ~~llv~llyy~~~~~~~~~~~glv~i~~fill~LS~e~~f~~~Ln~p~~~~~~~~lP~~~~i~~~~gT~~DflI~~i~~i 492 (895)
T PF12722_consen 413 LDLLVPLLYYLLEYRDDPSKQGLVRICSFILLYLSSERNFGVKLNKPFSAYYQNSLPNSFKIPVFPGTYADFLIISICNI 492 (895)
T ss_pred HHHHHHHHHHHHHhcCChhhcccHHHHHHHHHHHccchHHHHHhccccchhhcccCCCccccCCCCCcHHHHHHHHHHHH
Confidence 9999999999999998875 78899999999999999999999999854 44422122223899999999999999
Q ss_pred HhhhcccccccccchhH-HHHHhhhchh---------cccCCHHHHHHHHHHHHHHHHhHHHhhhhcccccCCCCcCCch
Q 004889 474 VKYNLSKLRDVYLHTTC-LATLANMAPH---------VHRLSAYASQRLVSLFYMLSRKYNKIADRRDDKKGNLTEQDSF 543 (725)
Q Consensus 474 I~~n~~~l~d~ylht~c-LaiLaN~Spy---------~~~Ls~~asqRLv~Lf~~lS~~~~~l~~~~~~~~~~~~~~~~~ 543 (725)
|.++.+++..+| +| +++|+|+||| +++||+.||.||++||+.||+|.|+++..
T Consensus 493 i~~~~~~~~~l~---~~l~~il~Ni~p~~~s~~~~~~~~~LS~~as~~L~~L~~~~S~p~fL~~~~-------------- 555 (895)
T PF12722_consen 493 ITTSHGRLSSLY---PCLLEILYNISPYTLSSKKSSNLKGLSYVASSKLLQLFSKFSSPSFLLSNE-------------- 555 (895)
T ss_pred HhcCCcccccHH---HHHHHHHHhcccccccchhhhhhcCcCHHHHHHHHHHHHHhcChHHHhcCC--------------
Confidence 999999999999 88 9999999999 99999999999999999999999998632
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhhcCCCCcchhhHHhhccccccccccCCc
Q 004889 544 AEDMSAELHIYTDFLRIVLEILNAILTYALPRNPEQVVYAILHREEVFQPFKSHP 598 (725)
Q Consensus 544 ~~d~~~el~~~~~~L~~lLEiiNsiL~~ql~~Np~~LVYalL~~r~~F~~l~~hp 598 (725)
.| +++|++|||+||++|+||+.+|++ |||+|+|+|++|+++++..
T Consensus 556 -------~n--~~ll~~LL~a~n~~i~~~~~~n~~-Lvyailr~~~~f~~L~~~~ 600 (895)
T PF12722_consen 556 -------FN--HDLLALLLEAFNNIIQYQFSGNPN-LVYAILRNRKVFEQLRNFT 600 (895)
T ss_pred -------ch--HHHHHHHHHHHHHHHHhccccchH-HHHHHHhhHHHHHHHHHhh
Confidence 12 699999999999999999999999 9999999999999998765
No 5
>PF08427 DUF1741: Domain of unknown function (DUF1741); InterPro: IPR013636 This is a eukaryotic domain of unknown function.
Probab=97.53 E-value=0.00058 Score=71.41 Aligned_cols=192 Identities=18% Similarity=0.353 Sum_probs=119.5
Q ss_pred cCchhHHHHHHHHHHhhhcccccccccchhHHHHHhhhchhcccCCHHHHHHHHHHHHHHHHhHHHhhhhcccccCCCCc
Q 004889 460 TSLGSLLVIILIRTVKYNLSKLRDVYLHTTCLATLANMAPHVHRLSAYASQRLVSLFYMLSRKYNKIADRRDDKKGNLTE 539 (725)
Q Consensus 460 ~SlgdLlIlvl~r~I~~n~~~l~d~ylht~cLaiLaN~Spy~~~Ls~~asqRLv~Lf~~lS~~~~~l~~~~~~~~~~~~~ 539 (725)
-+++--+.=+++-.|.+|+.|--|+-++.-|+.+|-.+=.|.+.=..--.=.=-.|+.+|-+=...+.+...
T Consensus 7 rpla~~iLD~~i~~i~~NL~k~l~v~lY~~~l~ii~Rll~y~~~~~~RL~Y~W~eLW~aLlsLl~Fl~~~~~-------- 78 (237)
T PF08427_consen 7 RPLATAILDLMIEFIRHNLRKRLDVDLYSLCLGIIHRLLCYLKRSRIRLEYHWSELWRALLSLLRFLTTYES-------- 78 (237)
T ss_pred CchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHhchh--------
Confidence 345555666666778899988667777779999888888777632211111112233333331111111000
Q ss_pred CCchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcC--CCCc---chhhHHhhccccccccccC----Cc------------
Q 004889 540 QDSFAEDMSAELHIYTDFLRIVLEILNAILTYAL--PRNP---EQVVYAILHREEVFQPFKS----HP------------ 598 (725)
Q Consensus 540 ~~~~~~d~~~el~~~~~~L~~lLEiiNsiL~~ql--~~Np---~~LVYalL~~r~~F~~l~~----hp------------ 598 (725)
|. ........++.-++.+||=+|.+.- =-.| .+|.|.|+|..++|+.|+. +.
T Consensus 79 ------~l-~~~~~i~~L~~~vv~l~n~~is~GDtFLPsp~~yDdL~YelVr~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 151 (237)
T PF08427_consen 79 ------DL-KDSPDIFQLAEQVVNLFNFFISYGDTFLPSPASYDDLFYELVRSGQVFDKFRDMYLRSSTSSSSEYKDSSD 151 (237)
T ss_pred ------hh-hcccChHHHHHHHHHHHHHHHHhccccCCChHHHHhHHHHhHhchHHHHHHHHHHhhccCCCccccccchh
Confidence 00 0001223788889999999999854 1122 2399999999999987763 11
Q ss_pred cHHHHHhhHHHHHHhhhhhhhc---cccCCCCCHHHHHHHHHHhcccC---CCCCCCCCCCCceeeeeCCCCCCccchh
Q 004889 599 RFNELLENIYTVLDFFNSRLDA---QRVDGEWSVEKVLQSIIINCRSW---RGDGLKMFTRLYFSYEQESHPEEFFIPY 671 (725)
Q Consensus 599 ~f~~~~~Ni~~vi~~f~~~l~~---~~~~~~~s~~~vl~~I~~~~~~~---~~~~l~~f~~l~F~YeEe~~~~eFF~Py 671 (725)
.....+.||..|++||+.++++ +.....+|.++|+++||++=.+. ..++|..+. +|.|.+ ---||--.
T Consensus 152 ~~~~sl~nl~~I~~Hf~~ki~~~~~~~~~~~lt~~qV~~VIk~~YdtLsl~~~e~Ld~~e----ry~E~~-~~~~~k~~ 225 (237)
T PF08427_consen 152 KLTNSLDNLRSIISHFESKIEEWSAANKKSNLTPEQVLEVIKQNYDTLSLKLQEGLDQWE----RYREAP-EKSFLKRI 225 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHhCccceecchhhcccccc----ccccCc-hHHHHHHH
Confidence 1236799999999999999985 22345789999999999987554 356665444 566655 33344333
No 6
>KOG4654 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.27 E-value=0.016 Score=58.08 Aligned_cols=98 Identities=17% Similarity=0.311 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHhhcC------CCCcchhhHHhhccccccccccCC-----------c----cHHHHHhhHHHHHHh
Q 004889 555 TDFLRIVLEILNAILTYAL------PRNPEQVVYAILHREEVFQPFKSH-----------P----RFNELLENIYTVLDF 613 (725)
Q Consensus 555 ~~~L~~lLEiiNsiL~~ql------~~Np~~LVYalL~~r~~F~~l~~h-----------p----~f~~~~~Ni~~vi~~ 613 (725)
.++..+++..+|-+|+|.. +.=.. |-|.|+|-++-|+.|.+- | ..-..+.||..||+|
T Consensus 98 f~La~lIldlf~mfIs~GDafl~~pde~dd-LfYeii~mhknFdn~~S~vlrlstnagq~kdaaskv~~AL~ni~aiieh 176 (252)
T KOG4654|consen 98 FRLAELILDLFAMFISNGDAFLIRPDELDD-LFYEIIHMHKNFDNFSSKVLRLSTNAGQIKDAASKVLGALNNILAIIEH 176 (252)
T ss_pred HHHHHHHHHHHHHHHhCCCeeeeCchHHHH-HHHHHHHHhcchhhHHHHHHHhccccccCchHHHHHHHHHHHHHHHHHh
Confidence 4788899999999999853 33345 899999999999877542 2 123568999999999
Q ss_pred hhhhhhcc---ccCCCCCHHHHHHHHHHhcccCC---CCCCCCCCC
Q 004889 614 FNSRLDAQ---RVDGEWSVEKVLQSIIINCRSWR---GDGLKMFTR 653 (725)
Q Consensus 614 f~~~l~~~---~~~~~~s~~~vl~~I~~~~~~~~---~~~l~~f~~ 653 (725)
|+.++++- ..-..+|.++|+++|+.+-.+.| .|++...|+
T Consensus 177 fnpKiedyaavnhi~qlsadeV~eVikae~dsi~la~Qd~~d~~e~ 222 (252)
T KOG4654|consen 177 FNPKIEDYAAVNHIPQLSADEVEEVIKAELDSIPLAKQDAFDGVEP 222 (252)
T ss_pred cCchhhhHHHhcccccccHHHHHHHHHHhccccchhhhccccCCCc
Confidence 99999762 11235699999999999988776 455555554
No 7
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=48.15 E-value=1e+02 Score=33.38 Aligned_cols=123 Identities=18% Similarity=0.195 Sum_probs=74.3
Q ss_pred HHHHHHHHhhcCccchhhhhcccChhhhHHHHHHHHHhcccCCC---CchHHHHHHHHHhcCCchhhhhhcccccCCCcc
Q 004889 375 AVLLLYSLVQGNSGFLEYVLVRTDLDTLLMPILETLYNASKKTP---NQIYMLLIILLILSQDSSFNASIHKMILPSVPW 451 (725)
Q Consensus 375 ~~lLLy~LL~~N~~F~~yvl~~~d~~~ll~piL~~ly~~~~~~s---~~v~m~l~ILLiLS~d~~F~~~ln~~~l~~ipw 451 (725)
.++-+...+=.++.+|..+.+ .+.-..+.++|. -.+..+++ +..|=+++++-.||=++.....+++..
T Consensus 169 ~av~~L~~LL~~~~~R~~f~~-~~~v~~l~~iL~--~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~------ 239 (312)
T PF03224_consen 169 IAVQCLQNLLRSKEYRQVFWK-SNGVSPLFDILR--KQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKY------ 239 (312)
T ss_dssp HHHHHHHHHHTSHHHHHHHHT-HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS------
T ss_pred HHHHHHHHHhCcchhHHHHHh-cCcHHHHHHHHH--hhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccc------
Confidence 344444444589999999998 322233344443 11112222 455779999999998888877776532
Q ss_pred cccccccccCchhHHHHHHHHHHhhhcccccccccchhHHHHHhhhchhcc--cCCHHHHHHHHHHHHHHHHhHH
Q 004889 452 YKEHLLHQTSLGSLLVIILIRTVKYNLSKLRDVYLHTTCLATLANMAPHVH--RLSAYASQRLVSLFYMLSRKYN 524 (725)
Q Consensus 452 ~~er~l~~~SlgdLlIlvl~r~I~~n~~~l~d~ylht~cLaiLaN~Spy~~--~Ls~~asqRLv~Lf~~lS~~~~ 524 (725)
+|..++.+++... |-+-+= -|+|++-|+...-. ....-.-.++..+++.|+.|-+
T Consensus 240 --------------~i~~L~~i~~~~~-KEKvvR---v~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~ 296 (312)
T PF03224_consen 240 --------------LIPLLADILKDSI-KEKVVR---VSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKW 296 (312)
T ss_dssp --------------HHHHHHHHHHH---SHHHHH---HHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--
T ss_pred --------------hHHHHHHHHHhcc-cchHHH---HHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCC
Confidence 3455555555443 222222 56999999998888 5666667888889999988744
No 8
>PF15469 Sec5: Exocyst complex component Sec5
Probab=39.82 E-value=1.8e+02 Score=28.94 Aligned_cols=148 Identities=14% Similarity=0.233 Sum_probs=93.9
Q ss_pred ccccchhHHHHHhhhchhcccCCHH-----HHHHHHHHHHHHHHhHHHhhhhcccccCCCCcCCchhhhhhhhhhhHHHH
Q 004889 483 DVYLHTTCLATLANMAPHVHRLSAY-----ASQRLVSLFYMLSRKYNKIADRRDDKKGNLTEQDSFAEDMSAELHIYTDF 557 (725)
Q Consensus 483 d~ylht~cLaiLaN~Spy~~~Ls~~-----asqRLv~Lf~~lS~~~~~l~~~~~~~~~~~~~~~~~~~d~~~el~~~~~~ 557 (725)
+.|+ .|-.+|.+|--.++..... ..++|-.-+...++....+..++-+ ...-.+...+-++++ +=
T Consensus 13 ~~Fv--~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pll~-------~~~k~~~l~~~l~~l-~r 82 (182)
T PF15469_consen 13 DKFV--SCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANSVFKPLLE-------RREKADKLRNALEFL-QR 82 (182)
T ss_pred HHHH--HHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHc-------cHHHHHHHHHHHHHH-HH
Confidence 3565 7888888888888655543 3567777666666655444333211 000001111111222 22
Q ss_pred HHHHHHHHHHHHhhcCCCCcchhhHHhhcccccccccc-CCccHHHHHhhHHHHHHhhhhhhhccccCCCCCHHHHHHHH
Q 004889 558 LRIVLEILNAILTYALPRNPEQVVYAILHREEVFQPFK-SHPRFNELLENIYTVLDFFNSRLDAQRVDGEWSVEKVLQSI 636 (725)
Q Consensus 558 L~~lLEiiNsiL~~ql~~Np~~LVYalL~~r~~F~~l~-~hp~f~~~~~Ni~~vi~~f~~~l~~~~~~~~~s~~~vl~~I 636 (725)
.+++++.=.++.++--.++-.++|=.--+.+.+|+..+ ..+.|+.+..-++.+++-|...+-..-.+.+.|.++.++.|
T Consensus 83 ~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~~s~~~~~~~i 162 (182)
T PF15469_consen 83 NRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFREKLWEKLLSPPSSQEEFLKLI 162 (182)
T ss_pred HHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 35556655566665444555535555557788899888 77799999999999999999999775556667999999999
Q ss_pred HHhc
Q 004889 637 IINC 640 (725)
Q Consensus 637 ~~~~ 640 (725)
+.-.
T Consensus 163 ~~Ll 166 (182)
T PF15469_consen 163 RKLL 166 (182)
T ss_pred HHHH
Confidence 7544
No 9
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.96 E-value=1.3e+02 Score=36.78 Aligned_cols=141 Identities=18% Similarity=0.293 Sum_probs=83.7
Q ss_pred HHHHHHHHhhcCccchhhhhcccChhhhHHHHHHHHHhcccCCCCchHHHHHHHHHhcCCchhhhhhcccccCCCccccc
Q 004889 375 AVLLLYSLVQGNSGFLEYVLVRTDLDTLLMPILETLYNASKKTPNQIYMLLIILLILSQDSSFNASIHKMILPSVPWYKE 454 (725)
Q Consensus 375 ~~lLLy~LL~~N~~F~~yvl~~~d~~~ll~piL~~ly~~~~~~s~~v~m~l~ILLiLS~d~~F~~~ln~~~l~~ipw~~e 454 (725)
.+=|||.||+ ++++..+|--+|++|-.++..- +--|.+= .- -+-+.+.+|..||
T Consensus 389 avDLLY~mcD-----------~~Nak~IV~elLqYL~tAd~si--reeivlK-vA----------ILaEKyAtDy~Wy-- 442 (938)
T KOG1077|consen 389 AVDLLYAMCD-----------VSNAKQIVAELLQYLETADYSI--REEIVLK-VA----------ILAEKYATDYSWY-- 442 (938)
T ss_pred HHHHHHHHhc-----------hhhHHHHHHHHHHHHhhcchHH--HHHHHHH-HH----------HHHHHhcCCcchh--
Confidence 4557776654 5778888889999887765432 1112111 11 2345678899999
Q ss_pred ccccccCchhHHHHHHHHHHhhhcccccccccchhHHHHHhhhchhcccCCHHHHHHHHHHHHHHHHhHHHhhhhccccc
Q 004889 455 HLLHQTSLGSLLVIILIRTVKYNLSKLRDVYLHTTCLATLANMAPHVHRLSAYASQRLVSLFYMLSRKYNKIADRRDDKK 534 (725)
Q Consensus 455 r~l~~~SlgdLlIlvl~r~I~~n~~~l~d~ylht~cLaiLaN~Spy~~~Ls~~asqRLv~Lf~~lS~~~~~l~~~~~~~~ 534 (725)
|.|+..+|.-.-.-..|--=|.-|-.+.. =+.++.|||.|+. +.|-++--
T Consensus 443 ------------VdviLqLiriagd~vsdeVW~RvvQiVvN-----nedlq~yaak~~f---e~Lq~~a~---------- 492 (938)
T KOG1077|consen 443 ------------VDVILQLIRIAGDYVSDEVWYRVVQIVVN-----NEDLQGYAAKRLF---EYLQKPAC---------- 492 (938)
T ss_pred ------------HHHHHHHHHHhcccccHHHHHHhheeEec-----chhhhHHHHHHHH---HHHhhhHH----------
Confidence 44555554432222222222333322333 3789999999865 44555421
Q ss_pred CCCCcCCchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcCCCCcchhhHHhhccc
Q 004889 535 GNLTEQDSFAEDMSAELHIYTDFLRIVLEILNAILTYALPRNPEQVVYAILHRE 588 (725)
Q Consensus 535 ~~~~~~~~~~~d~~~el~~~~~~L~~lLEiiNsiL~~ql~~Np~~LVYalL~~r 588 (725)
.| + ...+--++|-=+.++|+.+-+.-|- -.++++|++
T Consensus 493 --------------hE-~-mVKvggyiLGEfg~LIa~~prss~~-~qFsllh~K 529 (938)
T KOG1077|consen 493 --------------HE-N-MVKVGGYILGEFGNLIADDPRSSPA-VQFSLLHEK 529 (938)
T ss_pred --------------HH-H-HHHhhhhhhhhhhhhhcCCCCCChH-HHHHHHHHH
Confidence 11 1 1244456777788889888888888 888888764
No 10
>KOG0928 consensus Pattern-formation protein/guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=18.19 E-value=2.2e+02 Score=37.17 Aligned_cols=110 Identities=23% Similarity=0.397 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhcccccCCCCcCCchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcCCCCcchhhHHhhcc
Q 004889 508 ASQRLVSLFYMLSRKYNKIADRRDDKKGNLTEQDSFAEDMSAELHIYTDFLRIVLEILNAILTYALPRNPEQVVYAILHR 587 (725)
Q Consensus 508 asqRLv~Lf~~lS~~~~~l~~~~~~~~~~~~~~~~~~~d~~~el~~~~~~L~~lLEiiNsiL~~ql~~Np~~LVYalL~~ 587 (725)
=||++=++.++||.||..- +. +...+ + -+..+.| +..=|.-+...|||+
T Consensus 609 ESQ~IeRVlEAFSery~~~-----n~------~~~~~----~-----kDavFvL--sYSIIMLNTDqHNpq--------- 657 (1386)
T KOG0928|consen 609 ESQKIERVLEAFSERYYSD-----NS------PDIFA----D-----KDAVFVL--SYSIIMLNTDQHNPQ--------- 657 (1386)
T ss_pred cHHHHHHHHHHHHHHHHhc-----CC------Ccccc----c-----cchhhhh--hhhhheecccccChh---------
Confidence 4688889999999998731 10 00011 0 1222221 112234467789999
Q ss_pred ccccccccCCccHHHHHhhHHHHHHhhhhhhhccccCCCC---CHHHHHHHHHHhcccCCCCCCCCCCCCceeeeeCCCC
Q 004889 588 EEVFQPFKSHPRFNELLENIYTVLDFFNSRLDAQRVDGEW---SVEKVLQSIIINCRSWRGDGLKMFTRLYFSYEQESHP 664 (725)
Q Consensus 588 r~~F~~l~~hp~f~~~~~Ni~~vi~~f~~~l~~~~~~~~~---s~~~vl~~I~~~~~~~~~~~l~~f~~l~F~YeEe~~~ 664 (725)
.+.|.+|.|.+.|...+ ..+.+. =-+++-+.|+..- +.+ .||.+.
T Consensus 658 ------VK~~MT~dDf~rNlrg~-----------n~g~DFpreyLseiY~SIk~~E-------------Ivm--Pee~hG 705 (1386)
T KOG0928|consen 658 ------VKRKMTFDDFIRNLRGI-----------NGGKDFPREYLSEIYQSIKTNE-------------IVM--PEEHHG 705 (1386)
T ss_pred ------hhccCCHHHHhhhcccc-----------cCCCCCCHHHHHHHHHHHhhcc-------------eec--ccccCC
Confidence 88889999999994433 222322 3456666676654 333 456666
Q ss_pred CCccchhhHHHHhhhc
Q 004889 665 EEFFIPYVWQLVLSRC 680 (725)
Q Consensus 665 ~eFF~PyvW~~v~~~~ 680 (725)
-+=.-||+|.-+.+++
T Consensus 706 ~~~~~~~~W~~L~~~s 721 (1386)
T KOG0928|consen 706 TEEMFEYRWINLISRS 721 (1386)
T ss_pred chhhhHHHHHHHHhcc
Confidence 6666799999998853
Done!