Query 004889
Match_columns 725
No_of_seqs 193 out of 225
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 08:55:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004889.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004889hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x3zb1 a.189.1.1 (B:253-309) 21.7 18 0.0013 26.3 1.6 34 511-564 23-56 (57)
2 d1v54k_ f.23.5.1 (K:) Mitochon 20.7 22 0.0016 25.5 2.0 20 671-690 22-41 (49)
3 d1gxha_ a.28.2.1 (A:) ImmE8 (I 15.1 1.2E+02 0.0088 24.1 5.4 71 555-649 13-83 (85)
4 d1ayia_ a.28.2.1 (A:) ImmE7 pr 8.2 2.2E+02 0.016 22.5 4.8 70 555-646 13-82 (86)
5 d2vlqa1 a.28.2.1 (A:4-84) ImmE 7.9 2.4E+02 0.018 22.0 4.9 65 555-642 10-74 (81)
6 d2npta1 d.15.2.2 (A:4-108) Mit 6.3 2E+02 0.015 23.3 3.7 30 626-663 35-64 (105)
7 d1ho8a_ a.118.1.9 (A:) Regulat 6.2 7.1E+02 0.052 25.0 9.0 143 375-559 184-346 (477)
8 d1x58a1 a.4.1.1 (A:8-56) Hypot 6.0 1.5E+02 0.011 20.8 2.3 22 38-62 22-44 (49)
9 d1bu2a2 a.74.1.1 (A:149-250) V 5.6 76 0.0055 25.0 0.6 33 25-68 10-42 (102)
10 d2pf1a2 g.32.1.1 (A:36-65) Pro 4.8 1.1E+02 0.0083 19.3 0.9 23 34-57 2-24 (30)
No 1
>d1x3zb1 a.189.1.1 (B:253-309) Rad23 STI1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.66 E-value=18 Score=26.34 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhHHHhhhhcccccCCCCcCCchhhhhhhhhhhHHHHHHHHHHH
Q 004889 511 RLVSLFYMLSRKYNKIADRRDDKKGNLTEQDSFAEDMSAELHIYTDFLRIVLEI 564 (725)
Q Consensus 511 RLv~Lf~~lS~~~~~l~~~~~~~~~~~~~~~~~~~d~~~el~~~~~~L~~lLEi 564 (725)
-|.-||+.+|.||-.+++++.. | -+.++.|+||+
T Consensus 23 al~plle~ls~ryp~lre~im~----------------n----pe~fismllea 56 (57)
T d1x3zb1 23 ALAPLLENISARYPQLREHIMA----------------N----PEVFVSMLLEA 56 (57)
T ss_dssp GHHHHHHHHHTTCHHHHHHHHT----------------C----HHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhHHHHHHHHh----------------C----HHHHHHHHHhh
Confidence 4677999999999888776531 2 24789999986
No 2
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.74 E-value=22 Score=25.51 Aligned_cols=20 Identities=30% Similarity=0.750 Sum_probs=17.1
Q ss_pred hhHHHHhhhcCccccCCCcc
Q 004889 671 YVWQLVLSRCGFSFNPSAIN 690 (725)
Q Consensus 671 yvW~~v~~~~g~~w~~~~i~ 690 (725)
-||..|.-|.||.||-+-+.
T Consensus 22 avW~yv~TQ~gI~WnlSPVG 41 (49)
T d1v54k_ 22 AVWVYMATQIGIEWNPSPVG 41 (49)
T ss_dssp HHHHHHHHHSCCCCCCCCTT
T ss_pred hhhhheeeeeeeeecccccc
Confidence 48999999999999987554
No 3
>d1gxha_ a.28.2.1 (A:) ImmE8 (Im8) {Escherichia coli [TaxId: 562]}
Probab=15.05 E-value=1.2e+02 Score=24.06 Aligned_cols=71 Identities=24% Similarity=0.270 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcchhhHHhhccccccccccCCccHHHHHhhHHHHHHhhhhhhhccccCCCCCHHHHHH
Q 004889 555 TDFLRIVLEILNAILTYALPRNPEQVVYAILHREEVFQPFKSHPRFNELLENIYTVLDFFNSRLDAQRVDGEWSVEKVLQ 634 (725)
Q Consensus 555 ~~~L~~lLEiiNsiL~~ql~~Np~~LVYalL~~r~~F~~l~~hp~f~~~~~Ni~~vi~~f~~~l~~~~~~~~~s~~~vl~ 634 (725)
.++|.+|-+|+|+- +.-. -.-.++ +-|..+..||.-.|+|=- ...+.+-|++.|++
T Consensus 13 ~EFl~fl~~i~n~~------~~e~-~~d~ll---~hF~~iteHP~gsDLIfY--------------P~~~~edsPegIv~ 68 (85)
T d1gxha_ 13 TEFKKIIEDIINCE------GDEK-KQDDNL---EHFISVTEHPSGSDLIYY--------------PEGNNDGSPEAVIK 68 (85)
T ss_dssp HHHHHHHHHHHHTC------SSSH-HHHHHH---HHHHHTTCCTTTTHHHHS--------------CCSSCSSCTHHHHH
T ss_pred HHHHHHHHHHHhcC------CchH-HHHHHH---HHHHHhcCCCCCCceeee--------------CCCCCCCCHHHHHH
Confidence 38999998888642 2222 333444 247888888887777632 23344559999999
Q ss_pred HHHHhcccCCCCCCC
Q 004889 635 SIIINCRSWRGDGLK 649 (725)
Q Consensus 635 ~I~~~~~~~~~~~l~ 649 (725)
.|++.-.+--.++.|
T Consensus 69 ~IKeWRa~nG~PgFK 83 (85)
T d1gxha_ 69 EIKEWRAANGKSGFK 83 (85)
T ss_dssp HHHHHHHHTTCCCSC
T ss_pred HHHHHHHHcCCcccc
Confidence 999755544444333
No 4
>d1ayia_ a.28.2.1 (A:) ImmE7 protein (Im7) {Escherichia coli [TaxId: 562]}
Probab=8.20 E-value=2.2e+02 Score=22.50 Aligned_cols=70 Identities=19% Similarity=0.217 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcchhhHHhhccccccccccCCccHHHHHhhHHHHHHhhhhhhhccccCCCCCHHHHHH
Q 004889 555 TDFLRIVLEILNAILTYALPRNPEQVVYAILHREEVFQPFKSHPRFNELLENIYTVLDFFNSRLDAQRVDGEWSVEKVLQ 634 (725)
Q Consensus 555 ~~~L~~lLEiiNsiL~~ql~~Np~~LVYalL~~r~~F~~l~~hp~f~~~~~Ni~~vi~~f~~~l~~~~~~~~~s~~~vl~ 634 (725)
.++|.+|-+|+++-.... -. -.=.++ +-|..+..||.-.++|=- ...+.+-|++.|+.
T Consensus 13 ~EFl~fl~~i~~~~~~~~----e~-~~d~l~---~hF~~iteHP~gsDLIyY--------------P~~~~edsPegI~k 70 (86)
T d1ayia_ 13 AEFVQLLKEIEKENVAAT----DD-VLDVLL---EHFVKITEHPDGTDLIYY--------------PSDNRDDSPEGIVK 70 (86)
T ss_dssp HHHHHHHHHHHHHHTSSS----SH-HHHHHH---HHHHHHHCCTTTTHHHHS--------------CCTTSCCSHHHHHH
T ss_pred HHHHHHHHHHHhccCCcc----HH-HHHHHH---HHHHHHHcCCCCCceeee--------------CCCCCCCCHHHHHH
Confidence 378888888877533211 11 111111 125556666666655522 22334559999999
Q ss_pred HHHHhcccCCCC
Q 004889 635 SIIINCRSWRGD 646 (725)
Q Consensus 635 ~I~~~~~~~~~~ 646 (725)
.|++.-.+-..+
T Consensus 71 ~IKeWRa~nG~P 82 (86)
T d1ayia_ 71 EIKEWRAANGKP 82 (86)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC
Confidence 999755443333
No 5
>d2vlqa1 a.28.2.1 (A:4-84) ImmE9 protein (Im9) {Escherichia coli [TaxId: 562]}
Probab=7.90 E-value=2.4e+02 Score=21.95 Aligned_cols=65 Identities=18% Similarity=0.225 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcchhhHHhhccccccccccCCccHHHHHhhHHHHHHhhhhhhhccccCCCCCHHHHHH
Q 004889 555 TDFLRIVLEILNAILTYALPRNPEQVVYAILHREEVFQPFKSHPRFNELLENIYTVLDFFNSRLDAQRVDGEWSVEKVLQ 634 (725)
Q Consensus 555 ~~~L~~lLEiiNsiL~~ql~~Np~~LVYalL~~r~~F~~l~~hp~f~~~~~Ni~~vi~~f~~~l~~~~~~~~~s~~~vl~ 634 (725)
.++|.+|-+|+|+-- .... -.=. --+-|..+..||.-.++|=. ...+.+-|++.|++
T Consensus 10 ~EFl~fl~~i~~~~~-----~te~-~~d~---l~~hF~~iteHP~gsDLIfY--------------P~~~~edsPegIv~ 66 (81)
T d2vlqa1 10 AEFLQLVTTICNADT-----SSEE-ELVK---LVTHFEEMTEHPSGSDLIYY--------------PKEGDDDSPSGIVN 66 (81)
T ss_dssp HHHHHHHHHHHHTCS-----SSHH-HHHH---HHHHHHHHHCCTTTTHHHHS--------------CCTTCCCSHHHHHH
T ss_pred HHHHHHHHHHHhcCC-----CCHH-HHHH---HHHHHHHHccCCCCCceeee--------------CCCCCcCCHHHHHH
Confidence 389999888887311 0111 0001 11225555566655555422 22344669999999
Q ss_pred HHHHhccc
Q 004889 635 SIIINCRS 642 (725)
Q Consensus 635 ~I~~~~~~ 642 (725)
.|++.-.+
T Consensus 67 ~IK~WRa~ 74 (81)
T d2vlqa1 67 TVKQWRAA 74 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99965443
No 6
>d2npta1 d.15.2.2 (A:4-108) Mitogen activated protein kinase kinase 5, Map2k5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.33 E-value=2e+02 Score=23.29 Aligned_cols=30 Identities=27% Similarity=0.242 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHhcccCCCCCCCCCCCCceeeeeCCC
Q 004889 626 EWSVEKVLQSIIINCRSWRGDGLKMFTRLYFSYEQESH 663 (725)
Q Consensus 626 ~~s~~~vl~~I~~~~~~~~~~~l~~f~~l~F~YeEe~~ 663 (725)
.++-.+||++|++... + -..-.|.||.|+-
T Consensus 35 ~l~F~dvL~~i~q~~p----~----at~taFEYEDEdG 64 (105)
T d2npta1 35 QLLFRDVLDVIGQVLP----E----ATTTAFEYEDEDG 64 (105)
T ss_dssp CCCHHHHHHHHHHHST----T----SCCSEEEEECTTS
T ss_pred eeeHHHHHHHHHHhcc----c----ccccceeeccccC
Confidence 5789999999998764 2 2357899998864
No 7
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.18 E-value=7.1e+02 Score=25.00 Aligned_cols=143 Identities=12% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCccchhhhhcccChhhhHHHHHHHHHhcccCCC--------------CchHHHHHHHHHhcCCchhhhh
Q 004889 375 AVLLLYSLVQGNSGFLEYVLVRTDLDTLLMPILETLYNASKKTP--------------NQIYMLLIILLILSQDSSFNAS 440 (725)
Q Consensus 375 ~~lLLy~LL~~N~~F~~yvl~~~d~~~ll~piL~~ly~~~~~~s--------------~~v~m~l~ILLiLS~d~~F~~~ 440 (725)
..+-++..+=..+.||.-+. ..-...+.|++.+|-.+-...+ +..|=+++++-.||=+..++..
T Consensus 184 i~v~~lq~llr~~~~R~~fw--~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~ 261 (477)
T d1ho8a_ 184 VCIRLLQELAVIPEYRDVIW--LHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANE 261 (477)
T ss_dssp HHHHHHHHHHTSHHHHHHHH--TTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHhcCccHHHHHH--HcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHH
Q ss_pred hcccccCCCcccccccccccCchhHHHHHHHHHHhhhcccccccccchhHHHHHhhhchhcccCCHHHHH------HHHH
Q 004889 441 IHKMILPSVPWYKEHLLHQTSLGSLLVIILIRTVKYNLSKLRDVYLHTTCLATLANMAPHVHRLSAYASQ------RLVS 514 (725)
Q Consensus 441 ln~~~l~~ipw~~er~l~~~SlgdLlIlvl~r~I~~n~~~l~d~ylht~cLaiLaN~Spy~~~Ls~~asq------RLv~ 514 (725)
+.+.+.. +|..+++++... .|-+-+= -|++++-|+..--..-...++. ++..
T Consensus 262 l~~~~~~------------------~i~~l~~i~~~s-~KEKvvR---v~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~ 319 (477)
T d1ho8a_ 262 LVQKYLS------------------DFLDLLKLVKIT-IKEKVSR---LCISIILQCCSTRVKQHKKVIKQLLLLGNALP 319 (477)
T ss_dssp HHTTSHH------------------HHHHHHHHHHHC-CSHHHHH---HHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHH
T ss_pred HHHhhhH------------------HHHHHHHHHHhh-hHHHHHH---HHHHHHHHHhhhhhhhhhhHHHHHHHHcchhH
Q ss_pred HHHHHHHhHHHhhhhcccccCCCCcCCchhhhhhhhhhhHHHHHH
Q 004889 515 LFYMLSRKYNKIADRRDDKKGNLTEQDSFAEDMSAELHIYTDFLR 559 (725)
Q Consensus 515 Lf~~lS~~~~~l~~~~~~~~~~~~~~~~~~~d~~~el~~~~~~L~ 559 (725)
+++.|..|.+ .-||..+|++.+.+.|.
T Consensus 320 ~l~~L~~r~~------------------~Dedl~edl~~L~~~L~ 346 (477)
T d1ho8a_ 320 TVQSLSERKY------------------SDEELRQDISNLKEILE 346 (477)
T ss_dssp HHHHHHSSCC------------------SSHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC------------------CCHHHHHHHHHHHHHHH
No 8
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.02 E-value=1.5e+02 Score=20.79 Aligned_cols=22 Identities=18% Similarity=0.525 Sum_probs=13.9
Q ss_pred HHHH-hccCCCCCCCCcchhHHHHHH
Q 004889 38 FWQK-LLELPLSLHWPSHRVHQACEA 62 (725)
Q Consensus 38 FW~q-~ws~p~s~~~p~d~~~~~~~~ 62 (725)
-||. +|++|+ + |.-+..++++.
T Consensus 22 ~WNsILWs~PF--~-~GR~~vdLA~K 44 (49)
T d1x58a1 22 HWNSILWSFPF--Q-KGRRAVDLAHK 44 (49)
T ss_dssp CHHHHHHHSCC--C-TTCCHHHHHHH
T ss_pred hhhhhhhccCC--C-CCchhhHHHHH
Confidence 4988 899994 3 33455555543
No 9
>d1bu2a2 a.74.1.1 (A:149-250) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]}
Probab=5.65 E-value=76 Score=24.99 Aligned_cols=33 Identities=27% Similarity=0.536 Sum_probs=24.3
Q ss_pred hhhCCccCCCCchHHHHhccCCCCCCCCcchhHHHHHHHhhhcC
Q 004889 25 TFVGEKSFPLASDFWQKLLELPLSLHWPSHRVHQACEAFAQNNC 68 (725)
Q Consensus 25 rls~~~~I~~~D~FW~q~ws~p~s~~~p~d~~~~~~~~l~~nn~ 68 (725)
-++..-.||+ +||-|+++. +...+|+.+++-|+
T Consensus 10 p~c~alkipe--~~wpql~e~---------~s~tickaliqpni 42 (102)
T d1bu2a2 10 PLCNALKIPE--DLWPQLYEA---------ASTTICKALIQPNI 42 (102)
T ss_dssp HHHHHTTCCT--TSHHHHHHH---------HHHHHHHHTTSTTG
T ss_pred HhhhhccCcH--HHhHHHHHH---------HHHHHHHHHcCCCc
Confidence 4555555665 599999987 35678999998775
No 10
>d2pf1a2 g.32.1.1 (A:36-65) Prothrombin {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.81 E-value=1.1e+02 Score=19.30 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=13.8
Q ss_pred CCchHHHHhccCCCCCCCCcchhH
Q 004889 34 LASDFWQKLLELPLSLHWPSHRVH 57 (725)
Q Consensus 34 ~~D~FW~q~ws~p~s~~~p~d~~~ 57 (725)
+.|.||.+.-.-- |...|.|.+.
T Consensus 2 atd~fwakytace-s~r~prekl~ 24 (30)
T d2pf1a2 2 ATDAFWAKYTACE-SARNPREKLN 24 (30)
T ss_dssp CSHHHHHHHHHTS-TTCSSHHHHH
T ss_pred chhHHHHHHHHHH-HhcCcHHHHH
Confidence 5688998876532 3455555443
Done!