Query 004891
Match_columns 725
No_of_seqs 540 out of 4600
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 14:36:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004891.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004891hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02441 fa_ox_alpha_mit fatt 100.0 2E-130 4E-135 1137.4 78.0 699 1-712 10-737 (737)
2 TIGR02437 FadB fatty oxidation 100.0 1E-129 3E-134 1128.8 78.5 697 1-712 1-714 (714)
3 PRK11730 fadB multifunctional 100.0 5E-128 1E-132 1119.0 80.0 697 1-712 1-714 (715)
4 TIGR02440 FadJ fatty oxidation 100.0 4E-127 1E-131 1108.6 77.6 688 6-712 2-699 (699)
5 PRK11154 fadJ multifunctional 100.0 2E-126 4E-131 1106.1 78.4 690 5-713 6-707 (708)
6 TIGR02279 PaaC-3OHAcCoADH 3-hy 100.0 1.4E-73 2.9E-78 636.0 45.2 403 307-713 4-503 (503)
7 PRK08268 3-hydroxy-acyl-CoA de 100.0 5.5E-72 1.2E-76 625.3 45.7 405 305-713 4-504 (507)
8 COG1250 FadB 3-hydroxyacyl-CoA 100.0 6.3E-64 1.4E-68 514.9 31.7 280 307-586 2-285 (307)
9 KOG2304 3-hydroxyacyl-CoA dehy 100.0 9E-63 1.9E-67 464.4 19.9 280 306-585 9-298 (298)
10 PRK07819 3-hydroxybutyryl-CoA 100.0 8.9E-59 1.9E-63 485.0 32.7 280 305-584 2-286 (286)
11 KOG1683 Hydroxyacyl-CoA dehydr 100.0 5E-60 1.1E-64 480.6 18.7 378 319-713 1-380 (380)
12 PRK08293 3-hydroxybutyryl-CoA 100.0 2.9E-54 6.2E-59 453.7 32.7 279 307-585 2-287 (287)
13 PRK09260 3-hydroxybutyryl-CoA 100.0 1.5E-53 3.3E-58 448.7 33.9 280 308-587 1-283 (288)
14 PRK05808 3-hydroxybutyryl-CoA 100.0 1.5E-53 3.3E-58 447.5 32.0 278 307-584 2-282 (282)
15 PRK06035 3-hydroxyacyl-CoA deh 100.0 2.2E-53 4.8E-58 448.1 32.8 279 307-585 2-291 (291)
16 PLN02545 3-hydroxybutyryl-CoA 100.0 3.8E-53 8.3E-58 447.4 34.3 282 307-588 3-287 (295)
17 PRK07530 3-hydroxybutyryl-CoA 100.0 1.5E-52 3.3E-57 442.2 33.2 282 306-587 2-286 (292)
18 PRK08269 3-hydroxybutyryl-CoA 100.0 4E-51 8.7E-56 431.3 31.4 268 319-586 1-284 (314)
19 PRK07066 3-hydroxybutyryl-CoA 100.0 4E-51 8.6E-56 428.9 26.2 277 306-586 5-298 (321)
20 KOG1680 Enoyl-CoA hydratase [L 100.0 5.5E-50 1.2E-54 391.6 23.4 250 6-295 38-288 (290)
21 PRK05862 enoyl-CoA hydratase; 100.0 5.6E-49 1.2E-53 406.3 28.1 253 1-294 1-254 (257)
22 PRK07658 enoyl-CoA hydratase; 100.0 6.5E-49 1.4E-53 406.4 27.3 254 1-294 1-254 (257)
23 PRK09076 enoyl-CoA hydratase; 100.0 1.6E-48 3.5E-53 402.9 27.5 251 5-294 4-255 (258)
24 PRK06143 enoyl-CoA hydratase; 100.0 1.7E-48 3.8E-53 401.6 27.5 252 1-291 3-256 (256)
25 PRK06142 enoyl-CoA hydratase; 100.0 1.2E-48 2.7E-53 407.2 26.7 256 1-294 2-270 (272)
26 PRK05809 3-hydroxybutyryl-CoA 100.0 1.8E-48 3.9E-53 403.6 27.4 255 1-294 1-257 (260)
27 PRK05980 enoyl-CoA hydratase; 100.0 1.6E-48 3.4E-53 404.0 26.8 254 1-293 1-259 (260)
28 PRK08150 enoyl-CoA hydratase; 100.0 2.5E-48 5.3E-53 400.2 27.9 252 4-296 2-254 (255)
29 PRK08140 enoyl-CoA hydratase; 100.0 2.9E-48 6.3E-53 402.5 27.9 255 1-294 1-259 (262)
30 PRK08139 enoyl-CoA hydratase; 100.0 4.2E-48 9E-53 401.0 27.8 255 1-294 8-263 (266)
31 PRK09674 enoyl-CoA hydratase-i 100.0 5.8E-48 1.2E-52 398.1 28.3 251 1-294 1-252 (255)
32 PRK05995 enoyl-CoA hydratase; 100.0 6.7E-48 1.5E-52 399.7 28.6 255 1-294 1-259 (262)
33 PRK06563 enoyl-CoA hydratase; 100.0 5.2E-48 1.1E-52 398.7 27.4 251 6-294 1-252 (255)
34 PRK05981 enoyl-CoA hydratase; 100.0 6.7E-48 1.5E-52 400.6 27.4 256 1-294 1-263 (266)
35 PRK09245 enoyl-CoA hydratase; 100.0 7.3E-48 1.6E-52 400.3 27.6 255 1-294 1-263 (266)
36 PRK07657 enoyl-CoA hydratase; 100.0 9E-48 2E-52 398.1 27.5 255 1-294 1-257 (260)
37 PRK06495 enoyl-CoA hydratase; 100.0 9.4E-48 2E-52 397.0 27.3 253 1-294 1-254 (257)
38 PRK08138 enoyl-CoA hydratase; 100.0 1.4E-47 3.1E-52 396.5 28.6 251 4-294 7-258 (261)
39 PRK05674 gamma-carboxygeranoyl 100.0 1.1E-47 2.5E-52 397.6 27.7 256 2-295 3-262 (265)
40 PRK07468 enoyl-CoA hydratase; 100.0 1.4E-47 2.9E-52 396.9 27.9 256 1-294 1-259 (262)
41 PLN02600 enoyl-CoA hydratase 100.0 9.3E-48 2E-52 395.3 26.3 245 12-294 2-248 (251)
42 PLN02888 enoyl-CoA hydratase 100.0 2.5E-47 5.3E-52 394.7 29.4 253 3-296 8-263 (265)
43 PRK06494 enoyl-CoA hydratase; 100.0 1.4E-47 3E-52 396.2 27.5 252 1-294 1-256 (259)
44 PRK06210 enoyl-CoA hydratase; 100.0 1.5E-47 3.3E-52 399.2 27.9 256 1-294 2-269 (272)
45 TIGR02280 PaaB1 phenylacetate 100.0 1.4E-47 3.1E-52 395.7 27.3 250 6-294 1-253 (256)
46 PRK07511 enoyl-CoA hydratase; 100.0 1.9E-47 4E-52 396.0 28.2 255 1-294 1-258 (260)
47 PRK07799 enoyl-CoA hydratase; 100.0 2.1E-47 4.5E-52 396.1 28.3 253 3-294 4-260 (263)
48 PRK03580 carnitinyl-CoA dehydr 100.0 2.2E-47 4.7E-52 395.2 28.0 253 1-294 1-258 (261)
49 PRK08258 enoyl-CoA hydratase; 100.0 2.2E-47 4.7E-52 398.4 27.9 252 5-294 18-274 (277)
50 PRK08252 enoyl-CoA hydratase; 100.0 2.8E-47 6E-52 392.8 27.9 250 1-294 1-251 (254)
51 PRK06127 enoyl-CoA hydratase; 100.0 2.3E-47 4.9E-52 396.5 27.4 254 3-294 10-266 (269)
52 PRK07938 enoyl-CoA hydratase; 100.0 1.6E-47 3.4E-52 392.8 25.9 247 6-292 3-249 (249)
53 PRK09120 p-hydroxycinnamoyl Co 100.0 3.1E-47 6.8E-52 396.1 27.7 250 4-291 8-264 (275)
54 PLN02664 enoyl-CoA hydratase/d 100.0 2.4E-47 5.2E-52 397.6 25.7 246 12-294 15-272 (275)
55 PRK06688 enoyl-CoA hydratase; 100.0 5.5E-47 1.2E-51 392.7 28.2 251 4-294 5-256 (259)
56 TIGR01929 menB naphthoate synt 100.0 3.8E-47 8.3E-52 392.6 26.5 253 4-294 2-256 (259)
57 TIGR03210 badI 2-ketocyclohexa 100.0 7.2E-47 1.6E-51 389.9 27.6 252 3-295 1-254 (256)
58 PRK07659 enoyl-CoA hydratase; 100.0 5.3E-47 1.1E-51 392.1 26.3 251 4-294 6-257 (260)
59 PRK11423 methylmalonyl-CoA dec 100.0 6.5E-47 1.4E-51 391.0 26.8 253 1-294 1-258 (261)
60 PRK07260 enoyl-CoA hydratase; 100.0 9E-47 2E-51 389.5 27.7 251 3-291 1-255 (255)
61 PLN03214 probable enoyl-CoA hy 100.0 8.8E-47 1.9E-51 392.7 27.0 256 4-296 11-270 (278)
62 PRK07396 dihydroxynaphthoic ac 100.0 1.8E-46 3.8E-51 390.4 28.0 253 3-295 12-267 (273)
63 PRK08260 enoyl-CoA hydratase; 100.0 1.8E-46 3.9E-51 394.9 27.3 257 1-296 1-277 (296)
64 PRK06144 enoyl-CoA hydratase; 100.0 1.6E-46 3.4E-51 388.7 26.1 250 3-294 7-259 (262)
65 PRK08259 enoyl-CoA hydratase; 100.0 2.7E-46 5.9E-51 384.8 27.7 248 1-291 1-249 (254)
66 PRK06023 enoyl-CoA hydratase; 100.0 2.9E-46 6.4E-51 384.5 27.8 247 1-289 1-251 (251)
67 PRK07327 enoyl-CoA hydratase; 100.0 2.3E-46 4.9E-51 388.8 27.2 251 3-294 10-265 (268)
68 PRK05870 enoyl-CoA hydratase; 100.0 1.7E-46 3.7E-51 385.8 25.7 247 1-289 1-249 (249)
69 PRK06190 enoyl-CoA hydratase; 100.0 5.5E-46 1.2E-50 382.5 29.0 250 1-291 1-254 (258)
70 PRK05864 enoyl-CoA hydratase; 100.0 3.2E-46 6.9E-51 389.4 27.4 254 4-294 9-272 (276)
71 TIGR03189 dienoyl_CoA_hyt cycl 100.0 7.7E-46 1.7E-50 380.5 27.2 244 6-294 3-248 (251)
72 PRK12478 enoyl-CoA hydratase; 100.0 1.1E-45 2.5E-50 387.8 28.3 253 1-295 2-279 (298)
73 PRK07509 enoyl-CoA hydratase; 100.0 1.2E-45 2.7E-50 383.0 27.3 250 4-294 3-260 (262)
74 PLN02921 naphthoate synthase 100.0 1.7E-45 3.7E-50 388.8 28.6 254 3-295 64-321 (327)
75 COG1024 CaiD Enoyl-CoA hydrata 100.0 1.3E-45 2.8E-50 381.6 26.5 252 2-293 3-256 (257)
76 PRK06072 enoyl-CoA hydratase; 100.0 2.8E-45 6E-50 376.3 26.8 243 6-294 2-245 (248)
77 PRK07112 polyketide biosynthes 100.0 5.6E-45 1.2E-49 375.6 27.2 250 1-294 1-252 (255)
78 PRK07854 enoyl-CoA hydratase; 100.0 3.9E-45 8.5E-50 373.7 25.7 238 6-294 2-240 (243)
79 PF00378 ECH: Enoyl-CoA hydrat 100.0 1.2E-45 2.7E-50 379.7 22.1 244 7-289 1-245 (245)
80 PRK07110 polyketide biosynthes 100.0 9.1E-45 2E-49 372.7 27.7 245 1-287 2-247 (249)
81 PRK06130 3-hydroxybutyryl-CoA 100.0 2.8E-44 6.1E-49 383.0 31.7 276 307-587 3-285 (311)
82 PRK07827 enoyl-CoA hydratase; 100.0 7E-45 1.5E-49 376.5 25.9 249 4-293 6-257 (260)
83 PRK05617 3-hydroxyisobutyryl-C 100.0 7.6E-45 1.6E-49 388.1 23.8 286 4-295 3-324 (342)
84 PRK08321 naphthoate synthase; 100.0 3.9E-44 8.5E-49 377.2 27.9 252 5-294 24-295 (302)
85 PLN02874 3-hydroxyisobutyryl-C 100.0 4.7E-44 1E-48 386.3 24.3 290 3-296 10-338 (379)
86 TIGR03222 benzo_boxC benzoyl-C 100.0 3.7E-43 8E-48 390.6 23.8 254 3-294 255-541 (546)
87 PRK08184 benzoyl-CoA-dihydrodi 100.0 3.1E-43 6.7E-48 392.9 22.7 254 3-294 259-545 (550)
88 PRK05869 enoyl-CoA hydratase; 100.0 1.4E-42 3E-47 349.5 22.0 203 4-208 3-209 (222)
89 PLN02157 3-hydroxyisobutyryl-C 100.0 2.4E-42 5.1E-47 371.6 24.8 243 4-287 37-283 (401)
90 KOG1679 Enoyl-CoA hydratase [L 100.0 1.3E-43 2.9E-48 330.5 13.0 246 12-295 38-289 (291)
91 PRK08290 enoyl-CoA hydratase; 100.0 3.4E-42 7.3E-47 360.1 24.9 238 1-278 1-262 (288)
92 PLN02988 3-hydroxyisobutyryl-C 100.0 7.9E-41 1.7E-45 359.1 30.1 291 2-296 7-338 (381)
93 PRK06213 enoyl-CoA hydratase; 100.0 2.6E-41 5.7E-46 343.1 21.5 227 1-270 1-228 (229)
94 PRK08788 enoyl-CoA hydratase; 100.0 1E-40 2.2E-45 346.2 26.3 246 4-288 15-275 (287)
95 PRK08272 enoyl-CoA hydratase; 100.0 1.6E-40 3.4E-45 350.8 25.4 203 2-209 8-235 (302)
96 PLN02851 3-hydroxyisobutyryl-C 100.0 5E-39 1.1E-43 345.5 29.6 281 4-288 42-361 (407)
97 TIGR03200 dearomat_oah 6-oxocy 100.0 4.6E-39 9.9E-44 335.0 24.2 191 15-206 38-244 (360)
98 PRK06129 3-hydroxyacyl-CoA deh 100.0 7.7E-38 1.7E-42 332.2 30.3 262 308-569 2-274 (308)
99 KOG1681 Enoyl-CoA isomerase [L 100.0 2E-39 4.4E-44 305.6 13.9 255 3-294 18-288 (292)
100 PLN02267 enoyl-CoA hydratase/i 100.0 1.7E-38 3.6E-43 323.5 19.7 198 6-205 2-204 (239)
101 KOG0016 Enoyl-CoA hydratase/is 100.0 2.1E-37 4.5E-42 300.6 23.5 253 1-290 4-263 (266)
102 COG0447 MenB Dihydroxynaphthoi 100.0 3.3E-38 7.2E-43 295.1 15.3 252 3-294 17-275 (282)
103 PF02737 3HCDH_N: 3-hydroxyacy 100.0 4.1E-36 8.8E-41 292.3 20.2 180 310-489 1-180 (180)
104 KOG1682 Enoyl-CoA isomerase [L 100.0 8.9E-36 1.9E-40 275.8 16.8 245 12-294 39-284 (287)
105 TIGR03222 benzo_boxC benzoyl-C 100.0 1.6E-35 3.5E-40 329.6 21.3 202 3-206 10-232 (546)
106 PRK08184 benzoyl-CoA-dihydrodi 100.0 2.1E-35 4.6E-40 330.0 22.2 204 1-206 12-236 (550)
107 cd06558 crotonase-like Crotona 100.0 3.5E-35 7.7E-40 291.8 19.3 192 6-199 1-194 (195)
108 PRK07531 bifunctional 3-hydrox 100.0 1.9E-34 4E-39 324.1 27.3 244 307-554 3-254 (495)
109 KOG2305 3-hydroxyacyl-CoA dehy 100.0 6.3E-35 1.4E-39 276.0 14.7 232 307-538 2-241 (313)
110 KOG1684 Enoyl-CoA hydratase [L 100.0 1.2E-30 2.5E-35 263.2 19.3 290 4-296 38-367 (401)
111 PRK08268 3-hydroxy-acyl-CoA de 99.9 1E-25 2.3E-30 252.7 19.3 160 413-572 338-500 (507)
112 PF00725 3HCDH: 3-hydroxyacyl- 99.9 3.5E-24 7.7E-29 187.3 8.5 94 491-584 1-97 (97)
113 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.9 4.2E-20 9.1E-25 206.8 28.2 119 454-572 378-499 (503)
114 PF00725 3HCDH: 3-hydroxyacyl- 99.8 4.3E-19 9.3E-24 155.1 8.5 87 624-714 3-97 (97)
115 COG2084 MmsB 3-hydroxyisobutyr 99.8 3.3E-18 7E-23 175.1 15.5 188 309-526 1-211 (286)
116 cd07014 S49_SppA Signal peptid 99.8 2.2E-18 4.7E-23 168.0 11.5 144 31-192 22-175 (177)
117 cd07020 Clp_protease_NfeD_1 No 99.7 3.3E-17 7.1E-22 160.8 14.1 150 16-192 2-172 (187)
118 KOG2304 3-hydroxyacyl-CoA dehy 99.7 1.4E-17 3E-22 158.6 9.5 91 621-715 199-298 (298)
119 TIGR01505 tartro_sem_red 2-hyd 99.7 2E-16 4.4E-21 167.1 14.0 187 310-526 1-209 (291)
120 PRK11559 garR tartronate semia 99.7 8.1E-16 1.8E-20 163.0 16.4 188 308-526 2-212 (296)
121 PRK09260 3-hydroxybutyryl-CoA 99.7 2.3E-16 4.9E-21 166.3 10.8 93 622-718 185-284 (288)
122 PRK07417 arogenate dehydrogena 99.6 1.2E-14 2.6E-19 152.4 21.0 154 310-488 2-167 (279)
123 PRK05808 3-hydroxybutyryl-CoA 99.6 6.9E-16 1.5E-20 162.2 10.8 91 620-714 184-282 (282)
124 PRK07819 3-hydroxybutyryl-CoA 99.6 7.8E-16 1.7E-20 161.4 10.6 89 622-714 190-286 (286)
125 KOG0409 Predicted dehydrogenas 99.6 6.1E-15 1.3E-19 147.7 15.0 188 307-524 34-244 (327)
126 PLN02545 3-hydroxybutyryl-CoA 99.6 2.2E-15 4.8E-20 159.4 11.2 93 621-717 186-286 (295)
127 COG1250 FadB 3-hydroxyacyl-CoA 99.6 2.1E-15 4.6E-20 156.1 10.0 92 621-716 185-285 (307)
128 cd07019 S49_SppA_1 Signal pept 99.6 5.9E-15 1.3E-19 147.7 11.4 159 14-191 1-208 (211)
129 PLN02688 pyrroline-5-carboxyla 99.6 6.2E-14 1.3E-18 146.2 19.3 186 309-522 1-201 (266)
130 PRK08293 3-hydroxybutyryl-CoA 99.6 4.9E-15 1.1E-19 156.0 10.6 91 621-715 188-287 (287)
131 PRK07530 3-hydroxybutyryl-CoA 99.6 5.6E-15 1.2E-19 156.1 10.9 92 622-717 187-286 (292)
132 PRK08269 3-hydroxybutyryl-CoA 99.6 7E-15 1.5E-19 155.8 10.6 93 623-716 184-284 (314)
133 PRK06035 3-hydroxyacyl-CoA deh 99.6 6.8E-15 1.5E-19 155.3 9.9 89 622-714 189-290 (291)
134 PRK11199 tyrA bifunctional cho 99.6 3E-13 6.5E-18 147.1 22.5 171 307-518 97-277 (374)
135 PRK15461 NADH-dependent gamma- 99.6 3.3E-14 7.1E-19 150.2 13.9 186 309-522 2-206 (296)
136 PRK06130 3-hydroxybutyryl-CoA 99.5 3.6E-14 7.8E-19 151.5 10.8 95 623-718 185-286 (311)
137 PF03446 NAD_binding_2: NAD bi 99.5 1.9E-14 4E-19 138.4 7.5 148 308-488 1-163 (163)
138 PRK12491 pyrroline-5-carboxyla 99.5 6.6E-13 1.4E-17 138.0 19.2 153 309-487 3-161 (272)
139 PRK11880 pyrroline-5-carboxyla 99.5 7.2E-13 1.6E-17 138.3 19.1 188 308-522 2-202 (267)
140 PRK07679 pyrroline-5-carboxyla 99.5 6.4E-13 1.4E-17 139.4 17.6 189 307-522 2-206 (279)
141 TIGR01692 HIBADH 3-hydroxyisob 99.5 1.5E-13 3.2E-18 144.9 11.7 182 313-526 1-206 (288)
142 PRK08507 prephenate dehydrogen 99.5 2.4E-12 5.1E-17 134.9 20.3 151 310-488 2-168 (275)
143 PLN02350 phosphogluconate dehy 99.5 3.7E-13 8E-18 149.4 14.4 189 307-522 5-224 (493)
144 TIGR00705 SppA_67K signal pept 99.5 2.7E-13 5.8E-18 154.8 12.6 167 12-203 307-524 (584)
145 PRK06545 prephenate dehydrogen 99.5 1.3E-12 2.9E-17 141.7 17.1 167 309-497 1-184 (359)
146 PRK11154 fadJ multifunctional 99.5 1.8E-13 3.8E-18 160.6 10.7 88 623-716 494-588 (708)
147 cd07022 S49_Sppa_36K_type Sign 99.4 5.1E-13 1.1E-17 134.2 11.9 155 14-191 1-211 (214)
148 TIGR02440 FadJ fatty oxidation 99.4 2.2E-13 4.8E-18 159.3 10.6 91 621-717 487-584 (699)
149 PRK15059 tartronate semialdehy 99.4 1.6E-12 3.4E-17 136.8 15.8 182 310-522 2-204 (292)
150 cd00394 Clp_protease_like Case 99.4 5.7E-13 1.2E-17 127.9 11.2 135 28-183 8-161 (161)
151 PTZ00142 6-phosphogluconate de 99.4 1.7E-12 3.8E-17 144.0 16.6 192 309-523 2-219 (470)
152 COG0287 TyrA Prephenate dehydr 99.4 2.2E-12 4.7E-17 133.4 16.1 156 308-487 3-170 (279)
153 PRK11064 wecC UDP-N-acetyl-D-m 99.4 6.7E-12 1.4E-16 138.5 20.7 196 307-522 2-247 (415)
154 TIGR00872 gnd_rel 6-phosphoglu 99.4 3.9E-12 8.4E-17 134.6 17.8 187 310-522 2-208 (298)
155 PRK08655 prephenate dehydrogen 99.4 5.5E-12 1.2E-16 139.8 18.7 154 309-487 1-162 (437)
156 PRK12490 6-phosphogluconate de 99.4 2.6E-12 5.7E-17 136.0 15.0 182 310-523 2-210 (299)
157 PRK12557 H(2)-dependent methyl 99.4 1.2E-11 2.5E-16 132.2 20.0 205 320-547 32-260 (342)
158 TIGR03026 NDP-sugDHase nucleot 99.4 3.4E-12 7.4E-17 141.3 16.2 201 310-522 2-243 (411)
159 PRK09599 6-phosphogluconate de 99.4 3.2E-12 7E-17 135.5 15.2 182 310-523 2-211 (301)
160 cd07023 S49_Sppa_N_C Signal pe 99.4 2E-12 4.3E-17 129.5 11.9 153 15-190 2-204 (208)
161 COG0677 WecC UDP-N-acetyl-D-ma 99.4 3.1E-11 6.6E-16 125.8 20.8 198 309-522 10-250 (436)
162 TIGR02441 fa_ox_alpha_mit fatt 99.4 1.1E-12 2.3E-17 153.9 11.1 102 471-572 626-734 (737)
163 PRK07502 cyclohexadienyl dehyd 99.4 7.7E-12 1.7E-16 133.2 15.2 156 307-487 5-178 (307)
164 PLN02256 arogenate dehydrogena 99.4 9.2E-12 2E-16 131.2 15.5 153 308-487 36-203 (304)
165 PRK11730 fadB multifunctional 99.4 1.4E-12 3E-17 153.0 10.2 91 621-716 495-594 (715)
166 PLN02858 fructose-bisphosphate 99.3 6.6E-12 1.4E-16 155.4 15.3 187 308-526 4-217 (1378)
167 cd07016 S14_ClpP_1 Caseinolyti 99.3 4.4E-12 9.5E-17 121.6 10.5 129 31-183 15-160 (160)
168 TIGR02437 FadB fatty oxidation 99.3 2.2E-12 4.8E-17 150.9 10.0 90 621-715 495-593 (714)
169 TIGR00873 gnd 6-phosphoglucona 99.3 1.3E-11 2.7E-16 137.2 14.9 188 310-523 1-216 (467)
170 PRK15057 UDP-glucose 6-dehydro 99.3 1.1E-11 2.3E-16 135.2 13.9 193 310-522 2-232 (388)
171 TIGR00706 SppA_dom signal pept 99.3 1.3E-11 2.8E-16 123.3 13.3 154 15-195 2-204 (207)
172 PRK06928 pyrroline-5-carboxyla 99.3 7E-11 1.5E-15 123.7 18.3 153 308-485 1-160 (277)
173 PLN02858 fructose-bisphosphate 99.3 2.7E-11 5.8E-16 150.1 16.8 190 307-526 323-537 (1378)
174 PRK15182 Vi polysaccharide bio 99.3 2.7E-11 5.8E-16 133.6 14.8 200 309-522 7-243 (425)
175 PRK07680 late competence prote 99.3 9.3E-11 2E-15 122.7 17.3 182 310-522 2-202 (273)
176 COG0345 ProC Pyrroline-5-carbo 99.3 4.2E-11 9E-16 122.0 14.1 182 308-522 1-201 (266)
177 PRK08818 prephenate dehydrogen 99.3 3.7E-11 8.1E-16 128.9 14.2 137 309-487 5-154 (370)
178 PRK05479 ketol-acid reductoiso 99.3 1.3E-10 2.9E-15 122.3 17.4 186 309-520 18-226 (330)
179 COG1004 Ugd Predicted UDP-gluc 99.3 8.8E-11 1.9E-15 123.1 15.8 198 309-522 1-241 (414)
180 PRK06476 pyrroline-5-carboxyla 99.2 2.4E-10 5.2E-15 118.6 17.0 179 310-522 2-193 (258)
181 PRK00094 gpsA NAD(P)H-dependen 99.2 2.4E-10 5.1E-15 122.9 17.4 168 308-491 1-182 (325)
182 TIGR00465 ilvC ketol-acid redu 99.2 2.9E-10 6.4E-15 120.0 16.2 200 309-541 4-231 (314)
183 PRK07634 pyrroline-5-carboxyla 99.2 5.5E-10 1.2E-14 115.1 17.8 188 308-522 4-206 (245)
184 cd05297 GH4_alpha_glucosidase_ 99.2 2.5E-12 5.3E-17 142.2 0.0 161 309-483 1-185 (423)
185 cd07018 S49_SppA_67K_type Sign 99.2 9.9E-11 2.1E-15 118.3 10.9 145 28-192 26-219 (222)
186 PRK08229 2-dehydropantoate 2-r 99.2 1E-09 2.2E-14 118.8 19.2 168 308-492 2-181 (341)
187 PLN02353 probable UDP-glucose 99.2 1.3E-09 2.8E-14 121.3 20.3 203 308-522 1-251 (473)
188 PLN02712 arogenate dehydrogena 99.2 6.6E-10 1.4E-14 128.9 18.3 154 307-487 368-536 (667)
189 PTZ00431 pyrroline carboxylate 99.1 1.4E-09 3E-14 112.8 17.9 145 309-485 4-153 (260)
190 PRK14806 bifunctional cyclohex 99.1 7.3E-10 1.6E-14 132.1 16.8 156 308-487 3-176 (735)
191 cd07021 Clp_protease_NfeD_like 99.1 5.2E-10 1.1E-14 108.3 11.1 145 16-190 2-176 (178)
192 TIGR01915 npdG NADPH-dependent 99.1 1.5E-09 3.2E-14 109.7 14.9 163 309-488 1-189 (219)
193 PRK14618 NAD(P)H-dependent gly 99.1 9.3E-10 2E-14 118.4 12.5 166 308-491 4-181 (328)
194 PF02153 PDH: Prephenate dehyd 99.0 2.5E-09 5.4E-14 110.7 14.1 141 323-487 1-157 (258)
195 COG0240 GpsA Glycerol-3-phosph 99.0 4.8E-10 1E-14 116.3 8.1 109 308-428 1-110 (329)
196 PRK14619 NAD(P)H-dependent gly 99.0 4E-09 8.6E-14 112.3 15.2 140 309-491 5-158 (308)
197 TIGR01724 hmd_rel H2-forming N 99.0 3.3E-08 7.3E-13 101.7 20.3 147 320-487 32-193 (341)
198 PF03721 UDPG_MGDP_dh_N: UDP-g 99.0 1.4E-09 3E-14 106.4 9.3 108 309-429 1-125 (185)
199 PRK09287 6-phosphogluconate de 99.0 3.7E-09 8E-14 117.2 13.4 179 319-523 1-208 (459)
200 PLN02712 arogenate dehydrogena 99.0 1E-08 2.3E-13 119.0 17.5 153 308-487 52-219 (667)
201 PF01210 NAD_Gly3P_dh_N: NAD-d 99.0 3.9E-10 8.3E-15 107.7 4.4 105 310-426 1-106 (157)
202 PTZ00082 L-lactate dehydrogena 99.0 1.2E-09 2.7E-14 116.1 8.0 125 309-445 7-153 (321)
203 COG2085 Predicted dinucleotide 98.9 1.8E-08 3.8E-13 97.9 14.8 154 308-488 1-180 (211)
204 cd01339 LDH-like_MDH L-lactate 98.9 1.7E-09 3.6E-14 114.8 7.5 121 311-444 1-139 (300)
205 PRK07066 3-hydroxybutyryl-CoA 98.9 8.5E-10 1.9E-14 116.7 4.6 96 621-717 187-299 (321)
206 PF10727 Rossmann-like: Rossma 98.9 7.9E-09 1.7E-13 93.8 9.8 114 309-446 11-127 (127)
207 PRK06223 malate dehydrogenase; 98.9 3.5E-09 7.6E-14 112.8 8.8 125 308-444 2-143 (307)
208 PTZ00117 malate dehydrogenase; 98.9 3.7E-09 8.1E-14 112.6 8.4 125 309-445 6-147 (319)
209 COG1023 Gnd Predicted 6-phosph 98.9 3.9E-08 8.6E-13 95.7 14.5 187 309-525 1-213 (300)
210 PF03807 F420_oxidored: NADP o 98.9 2.6E-09 5.7E-14 92.9 5.7 91 310-424 1-95 (96)
211 PRK12439 NAD(P)H-dependent gly 98.8 7.9E-08 1.7E-12 103.7 14.3 177 306-497 5-193 (341)
212 PRK06249 2-dehydropantoate 2-r 98.7 1.7E-06 3.7E-11 92.4 20.8 177 306-498 3-196 (313)
213 COG0362 Gnd 6-phosphogluconate 98.6 5.3E-07 1.2E-11 94.1 14.9 190 308-525 3-222 (473)
214 PRK12921 2-dehydropantoate 2-r 98.6 1.4E-06 3E-11 92.8 18.6 167 309-491 1-180 (305)
215 PRK06444 prephenate dehydrogen 98.6 6.4E-07 1.4E-11 88.0 13.6 113 310-487 2-120 (197)
216 PRK14620 NAD(P)H-dependent gly 98.6 2.5E-07 5.5E-12 99.5 11.7 105 310-427 2-110 (326)
217 PRK06522 2-dehydropantoate 2-r 98.6 5.5E-07 1.2E-11 95.8 13.8 111 309-435 1-113 (304)
218 cd07015 Clp_protease_NfeD Nodu 98.6 6.8E-07 1.5E-11 85.7 12.7 145 16-186 2-165 (172)
219 TIGR01763 MalateDH_bact malate 98.5 2.6E-07 5.6E-12 97.8 8.9 101 309-422 2-117 (305)
220 TIGR03376 glycerol3P_DH glycer 98.5 3.2E-07 7E-12 98.1 9.1 107 310-429 1-122 (342)
221 PRK10949 protease 4; Provision 98.5 6.5E-07 1.4E-11 102.6 12.1 162 12-195 325-538 (618)
222 PTZ00345 glycerol-3-phosphate 98.5 2.1E-07 4.5E-12 100.3 7.2 111 309-428 12-134 (365)
223 KOG1683 Hydroxyacyl-CoA dehydr 98.5 2E-07 4.3E-12 96.8 6.1 171 12-186 64-240 (380)
224 PRK13403 ketol-acid reductoiso 98.5 1.2E-06 2.6E-11 91.2 11.5 86 309-421 17-104 (335)
225 PRK12480 D-lactate dehydrogena 98.4 5.6E-07 1.2E-11 96.3 9.1 112 309-448 147-262 (330)
226 cd00650 LDH_MDH_like NAD-depen 98.4 4E-07 8.7E-12 94.7 7.7 98 311-422 1-118 (263)
227 COG4007 Predicted dehydrogenas 98.4 5.4E-06 1.2E-10 81.6 13.7 147 320-487 33-194 (340)
228 TIGR00112 proC pyrroline-5-car 98.4 9.6E-06 2.1E-10 83.3 16.5 164 332-522 10-184 (245)
229 cd07013 S14_ClpP Caseinolytic 98.4 4.1E-06 8.8E-11 80.2 12.6 131 28-183 9-162 (162)
230 TIGR02354 thiF_fam2 thiamine b 98.3 1.2E-06 2.6E-11 86.7 7.5 104 309-420 22-142 (200)
231 PRK06129 3-hydroxyacyl-CoA deh 98.3 3E-06 6.4E-11 90.4 10.1 83 623-706 188-274 (308)
232 PRK00277 clpP ATP-dependent Cl 98.3 1.3E-05 2.8E-10 79.4 13.1 135 26-186 38-196 (200)
233 PRK13243 glyoxylate reductase; 98.2 4.7E-06 1E-10 89.5 10.1 102 309-436 151-255 (333)
234 PF00056 Ldh_1_N: lactate/mala 98.2 3.3E-06 7.1E-11 78.9 7.7 101 309-423 1-118 (141)
235 PF07991 IlvN: Acetohydroxy ac 98.2 3.2E-06 7E-11 78.8 6.9 93 309-428 5-99 (165)
236 COG1893 ApbA Ketopantoate redu 98.2 0.00019 4.2E-09 76.0 20.2 166 309-488 1-176 (307)
237 PRK06436 glycerate dehydrogena 98.2 1.1E-05 2.3E-10 85.2 10.6 134 309-471 123-267 (303)
238 cd05291 HicDH_like L-2-hydroxy 98.1 3.9E-06 8.4E-11 89.3 7.3 99 309-421 1-115 (306)
239 PRK05708 2-dehydropantoate 2-r 98.1 1.4E-05 2.9E-10 85.1 11.4 177 309-499 3-187 (305)
240 PLN03139 formate dehydrogenase 98.1 1.7E-05 3.8E-10 86.0 11.8 115 309-447 200-318 (386)
241 PRK07574 formate dehydrogenase 98.1 2.1E-05 4.5E-10 85.5 12.2 115 309-447 193-311 (385)
242 PRK15076 alpha-galactosidase; 98.1 1E-05 2.2E-10 89.7 9.9 77 308-396 1-84 (431)
243 PRK11778 putative inner membra 98.1 3.1E-05 6.7E-10 81.6 12.4 160 12-194 89-294 (330)
244 cd05293 LDH_1 A subgroup of L- 98.1 7.6E-06 1.7E-10 86.8 7.6 98 309-420 4-117 (312)
245 PRK15469 ghrA bifunctional gly 98.1 2.5E-05 5.4E-10 82.9 11.5 113 309-447 137-253 (312)
246 PRK12553 ATP-dependent Clp pro 98.1 5.3E-05 1.1E-09 75.5 13.1 136 26-186 42-202 (207)
247 cd07017 S14_ClpP_2 Caseinolyti 98.1 2.2E-05 4.8E-10 75.9 10.1 132 28-183 18-171 (171)
248 cd01065 NAD_bind_Shikimate_DH 98.0 6.1E-06 1.3E-10 78.4 5.5 104 309-433 20-126 (155)
249 PRK08605 D-lactate dehydrogena 98.0 7.6E-06 1.7E-10 87.9 6.9 92 309-428 147-241 (332)
250 KOG2380 Prephenate dehydrogena 98.0 0.0001 2.2E-09 75.7 13.9 152 308-486 52-218 (480)
251 COG0616 SppA Periplasmic serin 98.0 3.7E-05 8E-10 81.8 11.5 163 14-196 60-272 (317)
252 cd05292 LDH_2 A subgroup of L- 98.0 9.5E-06 2.1E-10 86.3 6.5 97 309-419 1-113 (308)
253 PLN02602 lactate dehydrogenase 98.0 1.4E-05 3E-10 85.9 7.3 98 309-420 38-151 (350)
254 PRK00066 ldh L-lactate dehydro 97.9 2.3E-05 5E-10 83.4 7.5 98 309-421 7-120 (315)
255 PRK14512 ATP-dependent Clp pro 97.9 9.7E-05 2.1E-09 72.8 11.3 140 27-190 31-193 (197)
256 PF02558 ApbA: Ketopantoate re 97.9 4E-05 8.6E-10 72.5 8.4 108 311-435 1-114 (151)
257 cd00300 LDH_like L-lactate deh 97.9 2.1E-05 4.6E-10 83.3 7.0 98 311-422 1-114 (300)
258 TIGR01327 PGDH D-3-phosphoglyc 97.9 5.1E-05 1.1E-09 86.5 10.6 130 309-463 139-279 (525)
259 KOG3124 Pyrroline-5-carboxylat 97.9 7.2E-05 1.6E-09 74.5 9.8 151 309-483 1-156 (267)
260 PRK12319 acetyl-CoA carboxylas 97.8 0.00033 7.2E-09 71.6 14.4 138 26-186 77-214 (256)
261 CHL00028 clpP ATP-dependent Cl 97.8 0.00031 6.6E-09 69.3 13.5 138 26-186 37-196 (200)
262 PRK05225 ketol-acid reductoiso 97.8 0.00097 2.1E-08 72.5 18.2 186 309-521 37-252 (487)
263 COG0111 SerA Phosphoglycerate 97.8 9.1E-05 2E-09 78.8 10.0 112 309-447 143-260 (324)
264 PF02826 2-Hacid_dh_C: D-isome 97.8 1.7E-05 3.7E-10 77.4 4.1 114 309-447 37-154 (178)
265 PF00574 CLP_protease: Clp pro 97.8 5.8E-05 1.3E-09 73.9 7.8 134 28-185 25-180 (182)
266 COG0039 Mdh Malate/lactate deh 97.8 4.4E-05 9.6E-10 79.8 7.0 102 309-423 1-118 (313)
267 PRK13581 D-3-phosphoglycerate 97.8 9.1E-05 2E-09 84.5 10.2 129 309-463 141-280 (526)
268 TIGR00493 clpP ATP-dependent C 97.8 0.00035 7.5E-09 68.7 12.6 136 27-185 34-190 (191)
269 cd05294 LDH-like_MDH_nadp A la 97.8 5.8E-05 1.3E-09 80.2 7.6 108 309-429 1-127 (309)
270 PLN02928 oxidoreductase family 97.7 0.00013 2.8E-09 78.8 10.1 126 309-447 160-289 (347)
271 cd05290 LDH_3 A subgroup of L- 97.7 8.5E-05 1.8E-09 78.7 8.0 100 310-422 1-118 (307)
272 PLN03230 acetyl-coenzyme A car 97.7 0.0011 2.5E-08 70.9 16.3 138 26-186 200-337 (431)
273 PRK14194 bifunctional 5,10-met 97.7 6.6E-05 1.4E-09 78.2 6.5 71 309-423 160-231 (301)
274 TIGR02853 spore_dpaA dipicolin 97.7 7.5E-05 1.6E-09 78.4 6.7 89 309-424 152-241 (287)
275 PRK05442 malate dehydrogenase; 97.7 6.7E-05 1.5E-09 80.0 6.4 104 308-424 4-131 (326)
276 PF01972 SDH_sah: Serine dehyd 97.7 0.00063 1.4E-08 68.7 12.7 97 25-145 69-165 (285)
277 TIGR00513 accA acetyl-CoA carb 97.6 0.0014 3E-08 68.6 15.4 137 26-185 130-266 (316)
278 CHL00198 accA acetyl-CoA carbo 97.6 0.0021 4.5E-08 67.4 16.6 137 26-185 133-269 (322)
279 KOG2711 Glycerol-3-phosphate d 97.6 8.4E-05 1.8E-09 76.8 6.2 117 306-428 19-144 (372)
280 PF00670 AdoHcyase_NAD: S-aden 97.6 0.00013 2.9E-09 68.6 6.9 88 309-424 24-111 (162)
281 TIGR01759 MalateDH-SF1 malate 97.6 0.00012 2.6E-09 77.9 7.2 103 309-424 4-130 (323)
282 PRK05724 acetyl-CoA carboxylas 97.6 0.002 4.2E-08 67.6 15.6 137 26-185 130-266 (319)
283 PF01343 Peptidase_S49: Peptid 97.6 8.4E-05 1.8E-09 70.6 5.1 102 94-196 2-150 (154)
284 PRK08410 2-hydroxyacid dehydro 97.6 0.00028 6E-09 75.1 9.6 110 309-448 146-259 (311)
285 PLN03229 acetyl-coenzyme A car 97.6 0.0017 3.7E-08 73.9 16.1 138 26-186 221-358 (762)
286 PRK05654 acetyl-CoA carboxylas 97.5 0.0035 7.5E-08 65.5 16.8 158 16-203 123-283 (292)
287 PRK11790 D-3-phosphoglycerate 97.5 0.00036 7.8E-09 77.0 10.1 100 309-436 152-254 (409)
288 PLN00112 malate dehydrogenase 97.5 0.00032 7E-09 77.2 9.5 102 309-424 101-227 (444)
289 PRK15409 bifunctional glyoxyla 97.5 0.0006 1.3E-08 72.8 10.6 101 309-436 146-251 (323)
290 cd01075 NAD_bind_Leu_Phe_Val_D 97.5 0.0008 1.7E-08 66.8 10.7 39 309-347 29-67 (200)
291 PRK14514 ATP-dependent Clp pro 97.5 0.0023 5.1E-08 63.8 13.8 137 26-186 61-219 (221)
292 PRK00257 erythronate-4-phospha 97.5 9.8E-05 2.1E-09 80.2 4.4 110 309-447 117-234 (381)
293 cd01338 MDH_choloroplast_like 97.5 0.00013 2.9E-09 77.7 5.3 100 309-423 3-128 (322)
294 PRK13302 putative L-aspartate 97.5 0.00048 1E-08 71.8 9.3 80 307-410 5-88 (271)
295 KOG2666 UDP-glucose/GDP-mannos 97.5 0.0014 3.1E-08 66.7 12.0 198 308-522 1-251 (481)
296 PLN00106 malate dehydrogenase 97.4 0.00042 9.1E-09 73.7 8.8 99 309-426 19-138 (323)
297 PRK13304 L-aspartate dehydroge 97.4 0.00049 1.1E-08 71.6 9.0 86 309-420 2-91 (265)
298 PRK06932 glycerate dehydrogena 97.4 0.00097 2.1E-08 71.0 11.2 109 309-447 148-260 (314)
299 PRK12551 ATP-dependent Clp pro 97.4 0.0023 5.1E-08 62.9 12.8 137 27-187 33-191 (196)
300 TIGR01772 MDH_euk_gproteo mala 97.4 0.00027 5.9E-09 74.9 6.7 98 310-426 1-119 (312)
301 PRK08306 dipicolinate synthase 97.4 0.00045 9.8E-09 72.9 8.3 91 309-426 153-244 (296)
302 PRK06487 glycerate dehydrogena 97.4 0.00066 1.4E-08 72.4 9.4 107 309-447 149-260 (317)
303 TIGR01757 Malate-DH_plant mala 97.4 0.00062 1.3E-08 73.8 9.3 101 309-423 45-170 (387)
304 TIGR00515 accD acetyl-CoA carb 97.4 0.0063 1.4E-07 63.3 16.1 155 18-202 124-281 (285)
305 cd01337 MDH_glyoxysomal_mitoch 97.4 0.00039 8.4E-09 73.5 7.2 98 309-425 1-119 (310)
306 PRK07531 bifunctional 3-hydrox 97.4 0.0005 1.1E-08 78.1 8.5 70 621-691 184-254 (495)
307 PRK14513 ATP-dependent Clp pro 97.3 0.0027 6E-08 62.5 12.5 137 26-187 34-193 (201)
308 TIGR03133 malonate_beta malona 97.3 0.021 4.6E-07 58.9 19.3 139 25-187 72-218 (274)
309 PRK06141 ornithine cyclodeamin 97.3 0.00054 1.2E-08 73.1 7.7 92 309-424 126-220 (314)
310 cd01487 E1_ThiF_like E1_ThiF_l 97.3 0.00066 1.4E-08 65.8 7.2 95 310-412 1-112 (174)
311 CHL00174 accD acetyl-CoA carbo 97.3 0.016 3.4E-07 60.2 17.4 141 25-199 146-292 (296)
312 cd00704 MDH Malate dehydrogena 97.3 0.00026 5.6E-09 75.5 4.7 100 310-423 2-126 (323)
313 PRK14188 bifunctional 5,10-met 97.3 0.00061 1.3E-08 71.2 7.1 71 309-424 159-231 (296)
314 PRK15438 erythronate-4-phospha 97.2 0.00024 5.2E-09 77.0 4.1 110 309-447 117-234 (378)
315 TIGR00705 SppA_67K signal pept 97.2 0.004 8.7E-08 71.9 14.4 105 12-134 41-161 (584)
316 KOG2653 6-phosphogluconate deh 97.2 0.0076 1.6E-07 62.6 14.5 194 308-525 6-226 (487)
317 PRK04148 hypothetical protein; 97.2 0.0032 6.8E-08 57.6 10.7 94 309-423 18-111 (134)
318 TIGR01771 L-LDH-NAD L-lactate 97.2 0.0003 6.6E-09 74.3 4.6 97 313-423 1-113 (299)
319 PF02056 Glyco_hydro_4: Family 97.2 0.0026 5.5E-08 61.6 10.3 74 310-395 1-81 (183)
320 PF01488 Shikimate_DH: Shikima 97.2 0.00058 1.3E-08 63.3 5.6 75 308-400 12-88 (135)
321 TIGR03134 malonate_gamma malon 97.2 0.0056 1.2E-07 62.0 12.9 142 27-188 44-191 (238)
322 PTZ00325 malate dehydrogenase; 97.1 0.00049 1.1E-08 73.2 4.9 34 307-340 7-43 (321)
323 COG1030 NfeD Membrane-bound se 97.1 0.0075 1.6E-07 65.1 13.7 153 12-191 25-194 (436)
324 PRK10949 protease 4; Provision 97.1 0.0038 8.3E-08 72.1 12.3 105 12-134 55-180 (618)
325 cd00401 AdoHcyase S-adenosyl-L 97.1 0.0016 3.4E-08 71.4 8.6 86 309-422 203-288 (413)
326 PRK14179 bifunctional 5,10-met 97.1 0.0011 2.4E-08 68.7 6.7 70 309-423 159-230 (284)
327 TIGR01758 MDH_euk_cyt malate d 97.1 0.0012 2.6E-08 70.5 7.2 101 310-424 1-126 (324)
328 COG1052 LdhA Lactate dehydroge 97.0 0.0013 2.8E-08 70.1 7.0 102 309-436 147-251 (324)
329 cd05197 GH4_glycoside_hydrolas 97.0 0.0038 8.3E-08 69.1 10.9 100 309-421 1-141 (425)
330 PLN02306 hydroxypyruvate reduc 97.0 0.0013 2.9E-08 71.7 7.0 127 309-447 166-299 (386)
331 cd05213 NAD_bind_Glutamyl_tRNA 97.0 0.0023 4.9E-08 68.3 8.5 92 309-423 179-273 (311)
332 PRK07189 malonate decarboxylas 97.0 0.05 1.1E-06 56.8 17.9 96 25-133 81-182 (301)
333 PRK05476 S-adenosyl-L-homocyst 97.0 0.0017 3.7E-08 71.3 7.6 87 309-424 213-300 (425)
334 TIGR02371 ala_DH_arch alanine 97.0 0.002 4.3E-08 69.1 8.0 93 309-425 129-224 (325)
335 TIGR00936 ahcY adenosylhomocys 97.0 0.0018 3.9E-08 70.7 7.6 86 309-423 196-282 (406)
336 TIGR00745 apbA_panE 2-dehydrop 97.0 0.017 3.6E-07 61.0 14.8 165 318-497 1-176 (293)
337 COG0059 IlvC Ketol-acid reduct 97.0 0.0057 1.2E-07 62.6 10.4 144 308-481 18-175 (338)
338 TIGR00507 aroE shikimate 5-deh 96.9 0.0012 2.6E-08 68.9 5.8 41 309-349 118-158 (270)
339 COG1748 LYS9 Saccharopine dehy 96.9 0.0015 3.2E-08 70.6 6.2 78 308-401 1-82 (389)
340 cd05296 GH4_P_beta_glucosidase 96.9 0.004 8.6E-08 68.9 9.6 75 309-395 1-83 (419)
341 PRK08644 thiamine biosynthesis 96.9 0.0016 3.4E-08 65.3 5.8 32 309-340 29-61 (212)
342 smart00859 Semialdhyde_dh Semi 96.9 0.0041 8.9E-08 56.4 8.2 99 310-428 1-104 (122)
343 PRK12552 ATP-dependent Clp pro 96.9 0.022 4.7E-07 56.8 13.7 143 28-186 49-214 (222)
344 cd05298 GH4_GlvA_pagL_like Gly 96.9 0.0061 1.3E-07 67.6 10.8 75 309-395 1-82 (437)
345 COG1712 Predicted dinucleotide 96.8 0.0049 1.1E-07 60.4 8.5 91 310-427 2-96 (255)
346 KOG0069 Glyoxylate/hydroxypyru 96.8 0.0036 7.8E-08 66.0 8.0 98 307-428 161-258 (336)
347 PTZ00075 Adenosylhomocysteinas 96.8 0.0022 4.7E-08 70.9 6.5 88 309-427 255-344 (476)
348 PRK12549 shikimate 5-dehydroge 96.8 0.0016 3.5E-08 68.3 5.2 72 309-396 128-201 (284)
349 KOG1495 Lactate dehydrogenase 96.8 0.0058 1.2E-07 61.4 8.4 106 308-427 20-141 (332)
350 PRK13301 putative L-aspartate 96.7 0.0052 1.1E-07 62.7 8.3 85 309-421 3-93 (267)
351 COG0569 TrkA K+ transport syst 96.7 0.0084 1.8E-07 60.7 9.9 93 309-421 1-99 (225)
352 PRK08618 ornithine cyclodeamin 96.7 0.0051 1.1E-07 66.0 8.1 93 309-425 128-223 (325)
353 COG4091 Predicted homoserine d 96.6 0.04 8.8E-07 57.4 13.8 158 309-488 18-185 (438)
354 cd01078 NAD_bind_H4MPT_DH NADP 96.6 0.0048 1E-07 61.0 7.0 41 309-349 29-70 (194)
355 cd01336 MDH_cytoplasmic_cytoso 96.6 0.0031 6.7E-08 67.5 6.0 101 309-424 3-129 (325)
356 PRK11861 bifunctional prephena 96.6 0.0092 2E-07 70.5 10.5 95 391-487 1-110 (673)
357 COG0740 ClpP Protease subunit 96.6 0.024 5.1E-07 55.3 11.3 142 18-188 30-194 (200)
358 PRK00258 aroE shikimate 5-dehy 96.6 0.0029 6.2E-08 66.4 5.5 71 309-398 124-196 (278)
359 PLN02494 adenosylhomocysteinas 96.6 0.0035 7.7E-08 69.1 6.3 87 309-424 255-342 (477)
360 cd01080 NAD_bind_m-THF_DH_Cycl 96.6 0.0058 1.3E-07 58.7 6.9 76 309-428 45-121 (168)
361 PRK07340 ornithine cyclodeamin 96.6 0.0066 1.4E-07 64.4 8.0 91 309-425 126-219 (304)
362 TIGR01921 DAP-DH diaminopimela 96.5 0.018 4E-07 60.9 10.9 124 309-499 4-133 (324)
363 TIGR02992 ectoine_eutC ectoine 96.5 0.0072 1.6E-07 64.9 8.1 73 309-398 130-205 (326)
364 TIGR01035 hemA glutamyl-tRNA r 96.5 0.0041 8.8E-08 69.1 6.0 39 309-347 181-220 (417)
365 PF01113 DapB_N: Dihydrodipico 96.4 0.0077 1.7E-07 54.9 6.1 104 309-433 1-108 (124)
366 TIGR01117 mmdA methylmalonyl-C 96.3 0.088 1.9E-06 59.8 15.5 165 18-202 319-497 (512)
367 COG1486 CelF Alpha-galactosida 96.3 0.03 6.5E-07 61.1 11.2 76 308-395 3-85 (442)
368 PF01039 Carboxyl_trans: Carbo 96.3 0.084 1.8E-06 59.9 15.3 127 25-187 70-206 (493)
369 PF01408 GFO_IDH_MocA: Oxidore 96.3 0.028 6.2E-07 50.5 9.4 77 310-411 2-84 (120)
370 PRK08291 ectoine utilization p 96.3 0.012 2.5E-07 63.4 7.9 72 309-397 133-207 (330)
371 PF01118 Semialdhyde_dh: Semia 96.2 0.0055 1.2E-07 55.6 4.5 99 310-429 1-103 (121)
372 PRK00045 hemA glutamyl-tRNA re 96.2 0.011 2.4E-07 65.8 7.9 39 309-347 183-222 (423)
373 COG2910 Putative NADH-flavin r 96.2 0.0082 1.8E-07 57.1 5.6 70 309-396 1-71 (211)
374 TIGR00518 alaDH alanine dehydr 96.2 0.0086 1.9E-07 65.3 6.6 39 309-347 168-206 (370)
375 PRK09310 aroDE bifunctional 3- 96.2 0.0088 1.9E-07 67.5 6.9 70 309-399 333-402 (477)
376 TIGR01809 Shik-DH-AROM shikima 96.2 0.01 2.2E-07 62.4 6.6 41 309-349 126-167 (282)
377 PRK06718 precorrin-2 dehydroge 96.2 0.059 1.3E-06 53.6 11.7 129 309-478 11-142 (202)
378 PRK05086 malate dehydrogenase; 96.1 0.013 2.8E-07 62.5 7.2 96 309-422 1-117 (312)
379 PRK06407 ornithine cyclodeamin 96.1 0.016 3.4E-07 61.4 7.7 93 309-424 118-213 (301)
380 PLN02819 lysine-ketoglutarate 96.1 0.041 8.8E-07 67.0 11.8 123 259-400 515-661 (1042)
381 PF13460 NAD_binding_10: NADH( 96.1 0.01 2.2E-07 57.7 5.7 96 311-424 1-100 (183)
382 PRK06046 alanine dehydrogenase 96.0 0.017 3.7E-07 62.0 7.8 92 309-424 130-224 (326)
383 TIGR01470 cysG_Nterm siroheme 96.0 0.031 6.8E-07 55.7 9.0 132 309-479 10-143 (205)
384 PLN00203 glutamyl-tRNA reducta 96.0 0.0073 1.6E-07 68.4 5.0 40 309-348 267-307 (519)
385 PF03059 NAS: Nicotianamine sy 95.9 0.028 6E-07 58.1 8.4 98 309-421 122-228 (276)
386 PF02254 TrkA_N: TrkA-N domain 95.9 0.042 9E-07 49.1 8.4 95 311-421 1-95 (116)
387 COG2423 Predicted ornithine cy 95.9 0.025 5.4E-07 60.1 7.9 92 308-422 130-224 (330)
388 TIGR02356 adenyl_thiF thiazole 95.8 0.015 3.2E-07 57.9 5.8 32 309-340 22-54 (202)
389 PRK00961 H(2)-dependent methyl 95.8 0.23 5E-06 50.3 13.8 106 379-487 133-242 (342)
390 PRK06823 ornithine cyclodeamin 95.8 0.034 7.3E-07 59.3 8.6 93 309-425 129-224 (315)
391 PRK00048 dihydrodipicolinate r 95.7 0.027 5.8E-07 58.3 7.2 35 309-343 2-39 (257)
392 COG0169 AroE Shikimate 5-dehyd 95.7 0.024 5.1E-07 59.1 6.7 42 309-350 127-169 (283)
393 PRK14175 bifunctional 5,10-met 95.6 0.032 7E-07 58.0 7.6 72 309-424 159-231 (286)
394 PRK00683 murD UDP-N-acetylmura 95.6 0.051 1.1E-06 60.6 9.7 37 308-344 3-39 (418)
395 COG0373 HemA Glutamyl-tRNA red 95.6 0.03 6.6E-07 61.0 7.5 41 309-349 179-220 (414)
396 PRK13940 glutamyl-tRNA reducta 95.6 0.014 3.1E-07 64.4 5.1 68 309-396 182-251 (414)
397 TIGR01117 mmdA methylmalonyl-C 95.6 0.32 7E-06 55.3 16.0 140 25-200 95-243 (512)
398 PF02423 OCD_Mu_crystall: Orni 95.6 0.013 2.9E-07 62.4 4.5 93 309-425 129-226 (313)
399 cd05191 NAD_bind_amino_acid_DH 95.6 0.041 8.8E-07 46.5 6.6 31 309-339 24-55 (86)
400 PLN02820 3-methylcrotonyl-CoA 95.5 0.37 7.9E-06 55.3 16.1 140 25-201 142-291 (569)
401 PRK12475 thiamine/molybdopteri 95.5 0.031 6.7E-07 60.2 6.9 33 309-341 25-58 (338)
402 COG0686 Ald Alanine dehydrogen 95.4 0.056 1.2E-06 55.8 8.2 93 309-422 169-267 (371)
403 PF03435 Saccharop_dh: Sacchar 95.4 0.017 3.6E-07 63.7 4.9 38 311-348 1-40 (386)
404 PRK07589 ornithine cyclodeamin 95.4 0.058 1.3E-06 58.1 8.7 95 309-425 130-227 (346)
405 PRK09424 pntA NAD(P) transhydr 95.3 0.056 1.2E-06 61.0 8.7 40 309-348 166-205 (509)
406 PRK13303 L-aspartate dehydroge 95.3 0.053 1.2E-06 56.4 7.8 78 308-409 1-81 (265)
407 COG1064 AdhP Zn-dependent alco 95.2 0.54 1.2E-05 50.1 15.0 40 309-348 168-207 (339)
408 PRK14192 bifunctional 5,10-met 95.2 0.049 1.1E-06 56.9 7.2 70 309-422 160-230 (283)
409 PRK09496 trkA potassium transp 95.1 0.097 2.1E-06 58.9 10.0 39 309-347 1-39 (453)
410 KOG0068 D-3-phosphoglycerate d 95.1 0.2 4.4E-06 52.3 10.9 89 309-424 147-236 (406)
411 KOG0022 Alcohol dehydrogenase, 95.1 0.39 8.5E-06 49.8 12.9 41 309-349 194-235 (375)
412 PRK10669 putative cation:proto 95.0 0.087 1.9E-06 61.1 9.4 96 309-420 418-513 (558)
413 TIGR01723 hmd_TIGR 5,10-methen 95.0 0.82 1.8E-05 46.5 14.7 106 379-487 131-240 (340)
414 COG0777 AccD Acetyl-CoA carbox 95.0 0.41 8.9E-06 48.5 12.6 161 15-205 124-286 (294)
415 PRK03659 glutathione-regulated 95.0 0.12 2.7E-06 60.2 10.5 96 309-420 401-496 (601)
416 COG0300 DltE Short-chain dehyd 94.9 0.07 1.5E-06 54.9 7.3 48 306-353 4-52 (265)
417 TIGR00561 pntA NAD(P) transhyd 94.9 0.075 1.6E-06 59.9 8.0 40 309-348 165-204 (511)
418 PRK14027 quinate/shikimate deh 94.8 0.052 1.1E-06 56.9 6.1 41 309-349 128-169 (283)
419 PRK09496 trkA potassium transp 94.8 0.14 3.1E-06 57.6 10.2 41 308-348 231-271 (453)
420 PRK06153 hypothetical protein; 94.8 0.074 1.6E-06 57.3 7.2 32 309-340 177-209 (393)
421 cd01484 E1-2_like Ubiquitin ac 94.7 0.098 2.1E-06 53.1 7.6 160 310-477 1-177 (234)
422 cd05311 NAD_bind_2_malic_enz N 94.7 0.17 3.7E-06 51.2 9.4 32 309-340 26-60 (226)
423 PF13380 CoA_binding_2: CoA bi 94.7 0.14 3E-06 46.0 7.7 80 309-420 1-85 (116)
424 PRK12409 D-amino acid dehydrog 94.7 0.024 5.3E-07 62.9 3.5 34 308-341 1-34 (410)
425 PRK04207 glyceraldehyde-3-phos 94.6 0.081 1.8E-06 57.1 7.3 106 309-425 2-111 (341)
426 PRK14189 bifunctional 5,10-met 94.6 0.079 1.7E-06 55.1 6.9 70 309-423 159-230 (285)
427 PRK07688 thiamine/molybdopteri 94.6 0.066 1.4E-06 57.7 6.5 33 309-341 25-58 (339)
428 PRK06719 precorrin-2 dehydroge 94.6 0.24 5.3E-06 47.0 9.7 32 309-340 14-45 (157)
429 PRK12548 shikimate 5-dehydroge 94.6 0.044 9.6E-07 57.8 5.1 34 309-342 127-161 (289)
430 PRK02318 mannitol-1-phosphate 94.6 0.04 8.6E-07 60.6 4.8 40 309-348 1-41 (381)
431 COG0825 AccA Acetyl-CoA carbox 94.5 0.099 2.1E-06 53.3 7.0 84 93-186 183-266 (317)
432 PF00070 Pyr_redox: Pyridine n 94.5 0.048 1E-06 45.3 4.1 35 310-344 1-35 (80)
433 PRK06199 ornithine cyclodeamin 94.5 0.071 1.5E-06 58.3 6.4 74 308-396 155-232 (379)
434 PRK08300 acetaldehyde dehydrog 94.4 0.83 1.8E-05 48.0 13.9 97 309-426 5-104 (302)
435 KOG2305 3-hydroxyacyl-CoA dehy 94.3 0.034 7.4E-07 54.5 3.1 57 623-680 190-248 (313)
436 PRK00436 argC N-acetyl-gamma-g 94.3 0.14 3E-06 55.4 8.2 100 308-429 2-105 (343)
437 PLN03075 nicotianamine synthas 94.2 0.34 7.3E-06 50.8 10.5 101 308-423 124-233 (296)
438 cd01483 E1_enzyme_family Super 94.1 0.12 2.6E-06 48.2 6.4 32 310-341 1-33 (143)
439 TIGR03736 PRTRC_ThiF PRTRC sys 94.1 0.11 2.3E-06 53.1 6.2 98 309-411 12-129 (244)
440 TIGR00036 dapB dihydrodipicoli 94.1 0.14 3.1E-06 53.2 7.4 32 309-340 2-36 (266)
441 PF13241 NAD_binding_7: Putati 94.0 0.12 2.6E-06 45.3 5.8 72 309-409 8-81 (103)
442 PRK12829 short chain dehydroge 94.0 0.25 5.4E-06 50.9 9.2 39 309-347 12-51 (264)
443 PRK12749 quinate/shikimate deh 94.0 0.085 1.8E-06 55.5 5.6 34 309-342 125-159 (288)
444 PRK03369 murD UDP-N-acetylmura 94.0 0.32 6.9E-06 55.4 10.7 35 309-343 13-47 (488)
445 PRK03562 glutathione-regulated 94.0 0.27 5.9E-06 57.6 10.3 95 308-420 400-496 (621)
446 COG1648 CysG Siroheme synthase 94.0 0.84 1.8E-05 45.5 12.3 131 309-479 13-146 (210)
447 PF01039 Carboxyl_trans: Carbo 93.9 0.28 6E-06 55.8 10.0 166 19-204 299-482 (493)
448 COG0136 Asd Aspartate-semialde 93.9 0.39 8.4E-06 50.8 10.0 147 309-486 2-156 (334)
449 COG1063 Tdh Threonine dehydrog 93.8 0.21 4.6E-06 54.2 8.6 40 310-349 171-211 (350)
450 PF02882 THF_DHG_CYH_C: Tetrah 93.8 0.12 2.5E-06 49.2 5.6 73 309-425 37-110 (160)
451 PRK05562 precorrin-2 dehydroge 93.8 0.44 9.5E-06 47.8 9.9 131 309-479 26-159 (223)
452 PRK12550 shikimate 5-dehydroge 93.8 0.15 3.3E-06 53.0 7.0 40 309-348 123-163 (272)
453 PRK00141 murD UDP-N-acetylmura 93.7 0.32 7E-06 55.1 10.1 37 307-343 14-50 (473)
454 PRK14191 bifunctional 5,10-met 93.7 0.15 3.3E-06 53.0 6.6 71 309-423 158-229 (285)
455 PRK12828 short chain dehydroge 93.7 0.12 2.6E-06 52.2 6.0 39 309-347 8-47 (239)
456 cd00757 ThiF_MoeB_HesA_family 93.6 0.12 2.6E-06 52.5 5.6 33 309-341 22-55 (228)
457 cd01076 NAD_bind_1_Glu_DH NAD( 93.5 0.17 3.7E-06 51.2 6.7 31 309-339 32-63 (227)
458 PRK06194 hypothetical protein; 93.4 0.38 8.3E-06 50.3 9.4 41 309-349 7-48 (287)
459 COG0499 SAM1 S-adenosylhomocys 93.4 0.22 4.8E-06 52.4 7.2 90 309-427 210-299 (420)
460 cd05212 NAD_bind_m-THF_DH_Cycl 93.4 0.22 4.8E-06 46.2 6.5 72 309-424 29-101 (140)
461 PRK07326 short chain dehydroge 93.4 0.16 3.5E-06 51.3 6.3 40 309-348 7-47 (237)
462 PRK08762 molybdopterin biosynt 93.3 0.061 1.3E-06 59.0 3.2 32 309-340 136-168 (376)
463 PRK05600 thiamine biosynthesis 93.2 0.072 1.6E-06 58.1 3.6 32 309-340 42-74 (370)
464 PRK01438 murD UDP-N-acetylmura 93.2 0.24 5.2E-06 56.3 8.0 47 295-342 4-50 (480)
465 PLN03209 translocon at the inn 93.1 0.44 9.5E-06 54.4 9.7 41 309-349 81-122 (576)
466 PRK14106 murD UDP-N-acetylmura 93.1 0.85 1.8E-05 51.3 12.2 34 308-341 5-38 (450)
467 PRK05597 molybdopterin biosynt 93.1 0.067 1.5E-06 58.1 3.1 33 309-341 29-62 (355)
468 PRK14178 bifunctional 5,10-met 93.0 0.27 5.9E-06 51.0 7.2 73 309-425 153-226 (279)
469 PRK05690 molybdopterin biosynt 93.0 0.18 3.8E-06 51.8 5.8 33 309-341 33-66 (245)
470 PRK08223 hypothetical protein; 92.9 0.28 6.1E-06 51.1 7.2 33 309-341 28-61 (287)
471 PRK10792 bifunctional 5,10-met 92.9 0.27 5.8E-06 51.2 6.9 71 309-423 160-231 (285)
472 cd05211 NAD_bind_Glu_Leu_Phe_V 92.8 0.24 5.2E-06 49.8 6.5 33 309-341 24-57 (217)
473 PRK05653 fabG 3-ketoacyl-(acyl 92.8 0.23 5E-06 50.3 6.5 42 307-348 4-46 (246)
474 PLN00016 RNA-binding protein; 92.8 0.28 6.1E-06 53.8 7.6 37 307-343 51-92 (378)
475 COG1206 Gid NAD(FAD)-utilizing 92.8 0.78 1.7E-05 47.9 10.0 35 309-343 4-38 (439)
476 TIGR01850 argC N-acetyl-gamma- 92.8 0.25 5.4E-06 53.5 6.9 100 309-429 1-105 (346)
477 cd01079 NAD_bind_m-THF_DH NAD 92.7 0.43 9.3E-06 46.6 7.7 87 309-425 63-158 (197)
478 CHL00194 ycf39 Ycf39; Provisio 92.7 0.2 4.4E-06 53.5 6.2 36 309-344 1-37 (317)
479 TIGR03215 ac_ald_DH_ac acetald 92.7 0.27 5.9E-06 51.4 6.8 90 310-425 3-97 (285)
480 PRK07877 hypothetical protein; 92.7 0.13 2.9E-06 60.5 5.0 32 309-341 108-141 (722)
481 PRK07825 short chain dehydroge 92.7 0.24 5.2E-06 51.5 6.6 40 309-348 6-46 (273)
482 COG4799 Acetyl-CoA carboxylase 92.7 1.6 3.5E-05 49.0 13.0 139 25-203 104-251 (526)
483 cd01490 Ube1_repeat2 Ubiquitin 92.7 0.34 7.3E-06 53.6 7.7 164 310-480 1-187 (435)
484 cd00755 YgdL_like Family of ac 92.6 0.25 5.4E-06 50.1 6.2 33 309-341 12-45 (231)
485 TIGR02355 moeB molybdopterin s 92.6 0.18 3.9E-06 51.6 5.3 34 309-342 25-59 (240)
486 PRK00711 D-amino acid dehydrog 92.6 0.098 2.1E-06 58.2 3.6 33 310-342 2-34 (416)
487 PRK07831 short chain dehydroge 92.5 0.29 6.2E-06 50.6 6.9 44 308-351 17-62 (262)
488 PF13766 ECH_C: 2-enoyl-CoA Hy 92.5 0.3 6.5E-06 44.0 5.9 53 244-296 48-102 (118)
489 PRK05786 fabG 3-ketoacyl-(acyl 92.5 0.61 1.3E-05 47.2 9.1 40 309-348 6-46 (238)
490 PRK05866 short chain dehydroge 92.5 0.23 5E-06 52.4 6.1 41 309-349 41-82 (293)
491 COG0673 MviM Predicted dehydro 92.4 0.3 6.5E-06 52.6 7.1 73 307-401 2-81 (342)
492 PRK14176 bifunctional 5,10-met 92.4 0.32 6.9E-06 50.6 6.8 73 309-425 165-238 (287)
493 PLN02968 Probable N-acetyl-gam 92.4 0.16 3.5E-06 55.5 4.9 102 307-429 37-140 (381)
494 PRK08340 glucose-1-dehydrogena 92.4 0.26 5.7E-06 50.8 6.3 41 310-350 2-43 (259)
495 PRK07774 short chain dehydroge 92.3 0.24 5.2E-06 50.5 5.9 39 309-347 7-46 (250)
496 PRK05868 hypothetical protein; 92.3 0.1 2.2E-06 57.2 3.2 36 308-343 1-36 (372)
497 PRK07454 short chain dehydroge 92.3 0.27 5.9E-06 49.9 6.2 41 307-347 5-46 (241)
498 PRK08267 short chain dehydroge 92.3 0.19 4.2E-06 51.7 5.1 40 308-347 1-41 (260)
499 PRK08328 hypothetical protein; 92.2 0.12 2.7E-06 52.4 3.5 34 309-342 28-62 (231)
500 PRK07231 fabG 3-ketoacyl-(acyl 92.2 0.37 8E-06 49.1 7.1 40 309-348 6-46 (251)
No 1
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=2e-130 Score=1137.41 Aligned_cols=699 Identities=34% Similarity=0.545 Sum_probs=621.3
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEE-EEEcCCCCCcCCCCchhhhhccCCC
Q 004891 1 MAAPRVTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAI-VLTGNGGRFSGGFDINVFQKVHGAG 77 (725)
Q Consensus 1 M~~~~i~~~~~~~~v~~i~l~~p~--~Nal~~~~~~~l~~~l~~~~~~~~v~~v-Vl~g~g~~F~aG~Dl~~~~~~~~~~ 77 (725)
|+++++.++. +++|++||||||+ .|+||.+|+.+|.+++++++.|+++|+| |+||.|++||+|+|++++.......
T Consensus 10 ~~~~~~~~~~-~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~ 88 (737)
T TIGR02441 10 MARTHRHYEV-KGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQ 88 (737)
T ss_pred CCCCeEEEEE-ECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChH
Confidence 6778899998 7899999999995 6999999999999999999999999975 5699999999999999986421111
Q ss_pred cccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCC--ceEeCcccccCCCCCchhhchHhhhhC
Q 004891 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPGFGGTQRLPRLVG 155 (725)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~--a~~~~pe~~~Gl~p~~g~~~~l~r~vG 155 (725)
+...+....++++ .+|.++||||||+|||+|+|||++|+|+||||||+++ ++|++||+++|++|++|++++|||++|
T Consensus 89 ~~~~~~~~~~~l~-~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG 167 (737)
T TIGR02441 89 EVTQLSQEGQEMF-ERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTG 167 (737)
T ss_pred HHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhC
Confidence 1222223345566 6799999999999999999999999999999999987 589999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCc-------------chHHHHHHHHHHHHHhcCchhhhhhhccCCCCCh--
Q 004891 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-------------EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL-- 220 (725)
Q Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~-- 220 (725)
..+|++|+++|++++|+||+++||||+|||+ +++.+.+.+++++++..+....+......+...+
T Consensus 168 ~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (737)
T TIGR02441 168 VPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVHKITQYVM 247 (737)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcccCCccccccccCccchhhc
Confidence 9999999999999999999999999999986 5578888888888765432221111001111110
Q ss_pred ---HHHHHHHHHHHHH-HHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCC
Q 004891 221 ---SEAREVLKLARLQ-AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (725)
Q Consensus 221 ---~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~ 296 (725)
......+..++.+ .++++++||||.+++++++.+...+++++++.|++.|.+++.|++++++++.|+.+|..++.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~~~~~~~~ 327 (737)
T TIGR02441 248 TNPFVRQQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTFESKALIGLFHGQTDCKKNK 327 (737)
T ss_pred ccchhHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCC
Confidence 1123345555554 457778899999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCc
Q 004891 297 NVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML 376 (725)
Q Consensus 297 ~~~~~~~~~~~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i 376 (725)
. ...+++++||+|||+|+||++||..++.+|++|+++|++++.++++.+++++.+++.+++|.+++.+.+..++++
T Consensus 328 ~----~~~~~~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i 403 (737)
T TIGR02441 328 F----GKPQRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNL 403 (737)
T ss_pred C----CCCCCcccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCe
Confidence 3 124478999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCee
Q 004891 377 KGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLL 456 (725)
Q Consensus 377 ~~~~~~~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lv 456 (725)
+++++++.+++||+|||||||++++|+++|+++++++++++|++||||+++++++++.+.+|+||+|+|||+|++.+++|
T Consensus 404 ~~~~~~~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~Lv 483 (737)
T TIGR02441 404 TPTLDYSGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLL 483 (737)
T ss_pred EEeCCHHHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHH
Q 004891 457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLD 536 (725)
Q Consensus 457 eii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv~~~dID~~~~~~G~p~Gpf~~~D 536 (725)
||++++.|++++++.+..+++.+||.||+++|+||||+||++.++++|+++++++|+++++||.++.++|+|+|||+++|
T Consensus 484 Evv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGFi~NRi~~~~~~ea~~lv~eGv~~~~ID~a~~~~G~p~GP~~l~D 563 (737)
T TIGR02441 484 EIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGVDPKKLDKLTTKFGFPVGAATLAD 563 (737)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHhhCCCCCC--CcHHHHHHHHcCCCccccCceeeeccCCC--CCCCCCCchhHHHHHhhhccCCCC
Q 004891 537 LAGYGVAAATSKEFDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYEKGS--KPKPDPSVLPIIEECRRLSNIMPG 612 (725)
Q Consensus 537 ~~Gld~~~~~~~~l~~~~~~~~~--~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 612 (725)
.+|||+++++.+.+...+++++. |++++++|+++|++|+|||+|||+|++++ ++..++++..++..... .|.
T Consensus 564 ~vGld~~~~v~~~l~~~~~~~~~~~~~~~l~~~v~~G~~G~k~G~GfY~y~~~~~~~~~~~~~v~~~~~~~~k----~p~ 639 (737)
T TIGR02441 564 EVGVDVAEHVAEDLGKAFGERFGGGSAELLSELVKAGFLGRKSGKGIFIYQEGKKGSKKVNSDADEILAQYKL----PPK 639 (737)
T ss_pred HhhHHHHHHHHHHHHHhcCcccccccCHHHHHHHHCCCCcccCCCeeEEcCCCCCCcCCCCHHHHHHHHHhcc----Ccc
Confidence 99999999999999999887653 68999999999999999999999998653 35577777666544321 111
Q ss_pred CCCCccccHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhC
Q 004891 613 GKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYG 692 (725)
Q Consensus 613 ~~~~~~~~~~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~ 692 (725)
.. ..+.++|.||++++++|||++||+|||+.+++|||.+|++|+|||+|+||||+|+|.+|++.+++.++.|++.++
T Consensus 640 --~~-~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~v~~~~~~l~~~~g 716 (737)
T TIGR02441 640 --AE-VSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKLVDKMEKYAAAYG 716 (737)
T ss_pred --cc-cCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHHhC
Confidence 00 246789999999999999999999999779999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHc-CCCCC
Q 004891 693 NFFKPSRFLEERATK-GIPLS 712 (725)
Q Consensus 693 ~~~~p~~~l~~~~~~-g~gf~ 712 (725)
++|.|+++|++|+++ |++||
T Consensus 717 ~~~~p~~lL~~~~~~~g~~f~ 737 (737)
T TIGR02441 717 VQFTPCQLLLDHAKSPGKKFY 737 (737)
T ss_pred CCcCCCHHHHHHHHhcCCCCC
Confidence 999999999999999 99997
No 2
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=1.3e-129 Score=1128.80 Aligned_cols=697 Identities=31% Similarity=0.530 Sum_probs=619.4
Q ss_pred CCCC--cEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC-
Q 004891 1 MAAP--RVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA- 76 (725)
Q Consensus 1 M~~~--~i~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~- 76 (725)
|++. +++++..+++|++|||||| +.|+||.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++......
T Consensus 1 ~~~~~~~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~ 80 (714)
T TIGR02437 1 MIYQGKTIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALP 80 (714)
T ss_pred CCcccceEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCC
Confidence 5555 5778754789999999999 68999999999999999999999999999999999999999999998642111
Q ss_pred -CcccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhC
Q 004891 77 -GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (725)
Q Consensus 77 -~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG 155 (725)
.....+....++++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus 81 ~~~~~~~~~~~~~~~-~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG 159 (714)
T TIGR02437 81 DAELIQWLLFANSIF-NKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIG 159 (714)
T ss_pred HHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhC
Confidence 11112223344566 6799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCC----ChHHHHHHHHHHH
Q 004891 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLG----SLSEAREVLKLAR 231 (725)
Q Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 231 (725)
..+|++|+++|++++|++|+++||||+++|.+++.+++.++++++....+.+.+. +..... +.......+..++
T Consensus 160 ~~~A~~llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 237 (714)
T TIGR02437 160 ADNALEWIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLDWKAK--RQPKLEPLKLSKIEAMMSFTTAK 237 (714)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCCccccc--CCCCcccccccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998876543221111 111111 1111111233344
Q ss_pred H-HHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcce
Q 004891 232 L-QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRK 310 (725)
Q Consensus 232 ~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~~~~~~~~~~~~~~k 310 (725)
. ..+++.++||||..++++++.+...+++++++.|++.|.+++.|++++++++.|+.+|..++.+.. ....+++++|
T Consensus 238 ~~~~~~~~~~~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r~~~~~~~~--~~~~~~~i~~ 315 (714)
T TIGR02437 238 GMVAQVAGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQYVKGKAKK--ADKIAKDVKQ 315 (714)
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhHhhcCCCCC--CCCCccccce
Confidence 4 455788999999999999999999999999999999999999999999999999999999876521 1235678999
Q ss_pred EEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCCCE
Q 004891 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM 390 (725)
Q Consensus 311 IaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDl 390 (725)
|+|||+|+||++||..++.+|++|+++|++++.++++.+++++.+++.+++|.+++++.+..+++++++++++.+++||+
T Consensus 316 v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl 395 (714)
T TIGR02437 316 AAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDI 395 (714)
T ss_pred EEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCCHHHHH
Q 004891 391 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVIL 470 (725)
Q Consensus 391 VIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~ 470 (725)
|||||||++++|+++|+++++++++++|++||||++++++++..+.+|+||+|+|||+|++.+|+|||++|+.|++++++
T Consensus 396 ViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~ 475 (714)
T TIGR02437 396 VVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIA 475 (714)
T ss_pred EEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCCCHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHH
Q 004891 471 DLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKE 549 (725)
Q Consensus 471 ~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv~~~dID~~~-~~~G~p~Gpf~~~D~~Gld~~~~~~~~ 549 (725)
.+.++++.+||.||+++|+||||+||++.++++|+++|+++|++|++||.++ .++|||||||+++|.+|||+.+++.+.
T Consensus 476 ~~~~~~~~lgk~pv~v~d~pGfi~NRl~~~~~~ea~~l~~eG~~~~~ID~a~~~~~G~p~GPf~l~D~~Gld~~~~i~~~ 555 (714)
T TIGR02437 476 TVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFVRIDKVMEKQFGWPMGPAYLLDVVGIDTGHHAQAV 555 (714)
T ss_pred HHHHHHHHcCCEEEEeCCcccchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhcCCCccCHHHHHHhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred HHhhCCCCCC--CcHHHHHHHHcCCCccccCceeeeccCCC----CCCCCCCchhHHHHHhhhccCCCCCCCCccccHHH
Q 004891 550 FDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYEKGS----KPKPDPSVLPIIEECRRLSNIMPGGKVPISVTEKE 623 (725)
Q Consensus 550 l~~~~~~~~~--~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (725)
+...++++.. +++++++|+++|++|+|||+|||+|+++. ++..|+++..++...+. + .+.++.++
T Consensus 556 ~~~~~~~~~~~~~~~~l~~~v~~G~lG~K~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~ 626 (714)
T TIGR02437 556 MAEGFPDRMGKDGRDAIDALFEAKRLGQKNGKGFYAYEADKKGKPKKLVDSSVLELLKPVVY-----E----QRDFDDEE 626 (714)
T ss_pred HHHhcCcccccchhHHHHHHHHCCCCcccCCCEEEecccCcCccccCCCCHHHHHHHHHhhc-----c----cCCCCHHH
Confidence 9998887642 56899999999999999999999996431 34466666655543321 0 11467889
Q ss_pred HHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHH
Q 004891 624 IVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEE 703 (725)
Q Consensus 624 i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~ 703 (725)
|.||++++++||+++||+|||+.+++|||.+|++|+|||+|+||||+|+|.+|++.+++.++.+. .++++|.|+++|++
T Consensus 627 i~~Rll~~~~nEa~~ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~Gl~~~~~~~~~~~-~~g~~~~p~~~l~~ 705 (714)
T TIGR02437 627 IIARMMIPMINETVRCLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIGVANFVALADQYA-ELGALYQVTAKLRE 705 (714)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHH-HhCCCCCCCHHHHH
Confidence 99999999999999999999777999999999999999999999999999999999999999765 78899999999999
Q ss_pred HHHcCCCCC
Q 004891 704 RATKGIPLS 712 (725)
Q Consensus 704 ~~~~g~gf~ 712 (725)
|+++|++||
T Consensus 706 ~~~~g~~f~ 714 (714)
T TIGR02437 706 MAKNGQSFY 714 (714)
T ss_pred HHHcCCCCC
Confidence 999999997
No 3
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=5e-128 Score=1119.03 Aligned_cols=697 Identities=32% Similarity=0.551 Sum_probs=617.7
Q ss_pred CCCC--cEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC
Q 004891 1 MAAP--RVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG 77 (725)
Q Consensus 1 M~~~--~i~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~ 77 (725)
|++. ++.++..+++|++|||||| +.|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus 1 ~~~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~ 80 (715)
T PRK11730 1 MIYQGKTLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAP 80 (715)
T ss_pred CCcccceEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCC
Confidence 6654 5777744689999999999 579999999999999999999999999999999999999999999886421111
Q ss_pred --cccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhC
Q 004891 78 --DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (725)
Q Consensus 78 --~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG 155 (725)
....+.....+++ .+|.++||||||+|||+|+|||++|+|+||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus 81 ~~~~~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG 159 (715)
T PRK11730 81 EEELSQWLHFANSIF-NRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIG 159 (715)
T ss_pred HHHHHHHHHHHHHHH-HHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcC
Confidence 1112222334555 6689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCh----HHHHHHHHHHH
Q 004891 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL----SEAREVLKLAR 231 (725)
Q Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 231 (725)
..+|++|+++|++++|+||+++||||+|||++++.+++.++|++++..+..+... +..+.+.. ......++.++
T Consensus 160 ~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~--~~~~~~p~a~~~~~~~~~~~~~k 237 (715)
T PRK11730 160 ADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKAR--RQPKLEPLKLSKIEAMMSFTTAK 237 (715)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCccccc--cCcccccccccchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999875322211 11111111 11112233333
Q ss_pred HH-HHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcce
Q 004891 232 LQ-AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRK 310 (725)
Q Consensus 232 ~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~~~~~~~~~~~~~~k 310 (725)
+. .|+++++||++..++++++.+...+++++++.|.+.|..++.|+|+++++++|+++|..++.+.. ....++.++|
T Consensus 238 ~~~~~~~~~~~pa~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~~~~~~~~--~~~~~~~i~~ 315 (715)
T PRK11730 238 GMVAQKAGKHYPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQYVKGKAKK--LAKDAKPVKQ 315 (715)
T ss_pred HHHHHhhccCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCC--CCCCccccce
Confidence 33 36788999999999999999999999999999999999999999999999999999999876522 1134567999
Q ss_pred EEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCCCE
Q 004891 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM 390 (725)
Q Consensus 311 IaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDl 390 (725)
|+|||+|+||.+||..++.+|++|+++|++++.++++.+++++.+++.+++|.+++++.+..+++++++++++.+++||+
T Consensus 316 v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl 395 (715)
T PRK11730 316 AAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFERVDV 395 (715)
T ss_pred EEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCCHHHHH
Q 004891 391 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVIL 470 (725)
Q Consensus 391 VIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~ 470 (725)
|||||||++++|+++|++|++++++++||+||||+++++++++.+.+|+||+|+|||+|++.+++|||++|+.|++++++
T Consensus 396 ViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~ 475 (715)
T PRK11730 396 VVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIA 475 (715)
T ss_pred EEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCCCHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHH
Q 004891 471 DLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKE 549 (725)
Q Consensus 471 ~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv~~~dID~~~-~~~G~p~Gpf~~~D~~Gld~~~~~~~~ 549 (725)
.+..+++.+||.||+++|+||||+||++.++++|++.++++|.+++|||.++ .++|+|+|||+++|.+|||+++++.+.
T Consensus 476 ~~~~~~~~lgk~pv~v~d~pGfv~nRi~~~~~~ea~~lv~~Ga~~e~ID~a~~~~~G~~~GP~~~~D~~Gld~~~~~~~~ 555 (715)
T PRK11730 476 TVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAV 555 (715)
T ss_pred HHHHHHHHhCCceEEecCcCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCccCHHHHHHhhchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 889999999999999999999999999
Q ss_pred HHhhCCCCCC--CcHHHHHHHHcCCCccccCceeeeccCCC----CCCCCCCchhHHHHHhhhccCCCCCCCCccccHHH
Q 004891 550 FDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYEKGS----KPKPDPSVLPIIEECRRLSNIMPGGKVPISVTEKE 623 (725)
Q Consensus 550 l~~~~~~~~~--~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (725)
++..++++.. +++++++|+++|++|+|||+|||+|+++. +..+|+.+..++..... .+ +.++.++
T Consensus 556 ~~~~~~~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----~~~~~~~ 626 (715)
T PRK11730 556 MAEGFPDRMKKDYRDAIDVLFEAKRFGQKNGKGFYRYEEDKKGKPKKEVDPAVYELLAPVVQ----PK-----REFSDEE 626 (715)
T ss_pred HHHhcCCccccchhHHHHHHHHCCCCccccCCEeEecccCCCcccccCCCHHHHHHHHHhcc----cc-----CCCCHHH
Confidence 9998887643 56899999999999999999999997432 23345555555443211 01 1467889
Q ss_pred HHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHH
Q 004891 624 IVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEE 703 (725)
Q Consensus 624 i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~ 703 (725)
|.||++.+++|||++|+++||+.+|+|||.+|++|+|||+|++|||+++|.+|+|.+++.++.+. .++++|.|+++|++
T Consensus 627 i~nRll~~~~~Ea~~ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~Gld~~~~~~~~~~-~~~~~~~p~~~L~~ 705 (715)
T PRK11730 627 IIARMMIPMINEVVRCLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLGVANYVALADKYA-HLGPLYQVPEGLRE 705 (715)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhCHHHHHHHHHHHH-HcCCCCCCCHHHHH
Confidence 99999999999999999999855999999999999999999999999999999999999999875 58899999999999
Q ss_pred HHHcCCCCC
Q 004891 704 RATKGIPLS 712 (725)
Q Consensus 704 ~~~~g~gf~ 712 (725)
|+++|++||
T Consensus 706 ~v~~~~~f~ 714 (715)
T PRK11730 706 MAANGESYY 714 (715)
T ss_pred HHHcCCCCC
Confidence 999999997
No 4
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=4.4e-127 Score=1108.58 Aligned_cols=688 Identities=34% Similarity=0.583 Sum_probs=608.0
Q ss_pred EEEEEecCcEEEEEeCCC--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEE-EcCCCCCcCCCCchhhhhccCCCccccc
Q 004891 6 VTMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (725)
Q Consensus 6 i~~~~~~~~v~~i~l~~p--~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl-~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (725)
++++..+++|++|||||| +.|+||.+|+++|.+++++++.|+++|+||| +|.|++||+|+|++++.......+...+
T Consensus 2 ~~~~~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~ 81 (699)
T TIGR02440 2 FTLTVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKAL 81 (699)
T ss_pred eEEEEcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHH
Confidence 445554789999999999 3799999999999999999999999999997 6888999999999998542111111122
Q ss_pred chhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCC--ceEeCcccccCCCCCchhhchHhhhhCHHHHH
Q 004891 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (725)
Q Consensus 83 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~--a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 160 (725)
....+.++ +.|.++||||||+|||+|+|||++|+|+||+|||+++ ++|++||+++|++|++|++++|+|++|..+|+
T Consensus 82 ~~~~~~~~-~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~ 160 (699)
T TIGR02440 82 AQQGQVLF-AELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTAL 160 (699)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHH
Confidence 23344556 6699999999999999999999999999999999975 79999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCC--CChHHHHHHHHHHHH-HHHHh
Q 004891 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKL--GSLSEAREVLKLARL-QAKKT 237 (725)
Q Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~ 237 (725)
+|+++|++++|+||+++||||+|||++++.+++.++|++. ..+ . +......++ .+.......+..+.+ ..+++
T Consensus 161 ~llltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~--~~~-~-~~~~~~~~~~~~~~~a~~~~~~~~~k~~~~~~ 236 (699)
T TIGR02440 161 DMILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKG--KPI-R-KPLSLQERLLEGTPLGRALLFDQAAKKTAKKT 236 (699)
T ss_pred HHHHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhC--CCC-C-CCccchhhhcccCchhHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999751 000 0 000000000 000111112222333 34578
Q ss_pred CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcceEEEEcCC
Q 004891 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGG 317 (725)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~~~~~~~~~~~~~~kIaVIG~G 317 (725)
+++|||+..+|++++.+...+++++++.|.+.|..++.|+|+++++++|+.++..++.++. . ..+++++||+|||+|
T Consensus 237 ~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~~~~~~~~~~~-~--~~~~~i~~v~ViGaG 313 (699)
T TIGR02440 237 QGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFATTEMKKETGS-D--ATPAKIKKVGILGGG 313 (699)
T ss_pred ccCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCC-C--CCcccccEEEEECCc
Confidence 8899999999999999999999999999999999999999999999999999999876552 2 234679999999999
Q ss_pred CCcHHHHHHHH-HCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCCCEEEEecc
Q 004891 318 LMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVI 396 (725)
Q Consensus 318 ~mG~~iA~~l~-~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVIeavp 396 (725)
.||++||..++ ++|++|+++|++++.++++.+++.+.+++.++++.+++++.+..+++|+++++++.+++||+||||||
T Consensus 314 ~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~adlViEav~ 393 (699)
T TIGR02440 314 LMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGFKDVDIVIEAVF 393 (699)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHhccCCEEEEecc
Confidence 99999999998 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCCHHHHHHHHHHH
Q 004891 397 ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVG 476 (725)
Q Consensus 397 e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~~~~~l~ 476 (725)
|++++|+++|++|++++++++||+||||+++++++++.+.+|+||+|+|||||++.+++|||++++.|++++++.+..++
T Consensus 394 E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~ 473 (699)
T TIGR02440 394 EDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALA 473 (699)
T ss_pred ccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHhhCCC
Q 004891 477 KIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPD 556 (725)
Q Consensus 477 ~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv~~~dID~~~~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~ 556 (725)
+.+||.||+++|.||||+||++.++++|+++++++|++++|||.++.++|||+|||+++|.+|+|+++++++.+++.+++
T Consensus 474 ~~~gk~pv~v~d~pGfi~nRl~~~~~~Ea~~l~~~G~~~~dID~a~~~~G~p~GPf~l~D~vGld~~~~i~~~l~~~~~~ 553 (699)
T TIGR02440 474 KKQGKTPIVVADKAGFYVNRILAPYMNEAARLLLEGEPVEHIDKALVKFGFPVGPITLLDEVGIDVGAKISPILEAELGE 553 (699)
T ss_pred HHcCCeEEEEccccchHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCcCHHHHHHHhchHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHcCCCccccCceeeeccCCC-CCCCCCCchhHHHHHhhhccCCCCCCCCccccHHHHHHHHHHHHHHH
Q 004891 557 RSFQSPLVDLLLKSGRNGKANGKGLYTYEKGS-KPKPDPSVLPIIEECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNE 635 (725)
Q Consensus 557 ~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~e 635 (725)
++.|++++++|+++|++|+|||+|||+|++++ ++.+++.+..++. ..+ ...++..++.||++.+++||
T Consensus 554 ~~~~~~~l~~~v~~G~lG~ksg~GfY~y~~~~~~~~~~~~~~~~~~-------~~~----~~~~~~g~v~~Rll~~~~~E 622 (699)
T TIGR02440 554 RFKAPAVFDKLLSDDRKGRKNGKGFYLYGAATKKKAVDESVYGLLG-------IKP----GVDKEASAVAERCVMLMLNE 622 (699)
T ss_pred CCCCcHHHHHHHHCCCCcccCCcEEEeCCCCCCcCCCCHHHHHHhC-------cCC----CCCCCHHHHHHHHHHHHHHH
Confidence 87789999999999999999999999998643 3445544443321 111 01467889999999999999
Q ss_pred HHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCCCCC
Q 004891 636 SCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLS 712 (725)
Q Consensus 636 a~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~gf~ 712 (725)
|++|+++||+.+|+|||++|++|+|||+|++|||+|+|.+|++.+++.++.+++.++++|.|+++|++|+++|+.||
T Consensus 623 a~~ll~eGvva~~~dID~~~~~g~G~p~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~g~~~~p~~~L~~~~~~~~~f~ 699 (699)
T TIGR02440 623 AVRCLDEGVIRSPRDGDIGAIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGDRFTPCQRLVAMAAEKQSFY 699 (699)
T ss_pred HHHHHHCCCcCCHHHHHHHHHhcCCCCCCcCCHHHHHHHhCHHHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCCCcC
Confidence 99999999966999999999999999999999999999999999999999999999999999999999999999997
No 5
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=2e-126 Score=1106.14 Aligned_cols=690 Identities=35% Similarity=0.577 Sum_probs=611.4
Q ss_pred cEEEEEecCcEEEEEeCCC--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCcccc
Q 004891 5 RVTMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSL 81 (725)
Q Consensus 5 ~i~~~~~~~~v~~i~l~~p--~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~ 81 (725)
.++++.++++|++|||||| +.|+||.+|+++|.+++++++.|+++|+|||+|.+ ++||+|+|++++...........
T Consensus 6 ~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~ 85 (708)
T PRK11154 6 AFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEA 85 (708)
T ss_pred eEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHH
Confidence 4677775689999999999 57999999999999999999999999999999864 89999999998854221111112
Q ss_pred cchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCC--ceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (725)
Q Consensus 82 ~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~--a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (725)
+....++++ ++|.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|++++|..+|
T Consensus 86 ~~~~~~~~~-~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A 164 (708)
T PRK11154 86 LARQGQQLF-AEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTA 164 (708)
T ss_pred HHHHHHHHH-HHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHH
Confidence 223344555 6799999999999999999999999999999999986 5899999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCC--ChHHHHHHHHHHHHH-HHH
Q 004891 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLG--SLSEAREVLKLARLQ-AKK 236 (725)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~ 236 (725)
++|+++|++++|+||+++||||+|+|++++.+++.++|+++....+ . .....++. +.......+..++.. .++
T Consensus 165 ~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~~-~---~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 240 (708)
T PRK11154 165 LDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPARR-P---LPVRERLLEGNPLGRALLFKQARKKTLAK 240 (708)
T ss_pred HHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCCccC-c---CCchhhhcccCchhHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999988421111 0 00000000 011112233344444 347
Q ss_pred hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcceEEEEcC
Q 004891 237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGG 316 (725)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~~~~~~~~~~~~~~kIaVIG~ 316 (725)
++++|||+..+|++++.+...+++++++.|.+.|..++.|+|+++++++|+.++..++.+.. . ..+++++||+|||+
T Consensus 241 ~~g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~~~~~~~~~~-~--~~~~~i~~v~ViGa 317 (708)
T PRK11154 241 TQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFATTEMKKDTGS-D--AKPRPVNKVGVLGG 317 (708)
T ss_pred cccCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCC-C--CCCCcccEEEEECC
Confidence 88899999999999999999999999999999999999999999999999999998876552 2 23468999999999
Q ss_pred CCCcHHHHHHHH-HCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCCCEEEEec
Q 004891 317 GLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAV 395 (725)
Q Consensus 317 G~mG~~iA~~l~-~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVIeav 395 (725)
|.||++||..++ .+|++|+++|++++.++++.+++++.+++.+++|.+++.+.+..+++|+++++++++++||+|||||
T Consensus 318 G~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav 397 (708)
T PRK11154 318 GLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAV 397 (708)
T ss_pred chhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHhccCCEEeecc
Confidence 999999999999 8899999999999999999999999999999999999999999999999999999899999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCCHHHHHHHHHH
Q 004891 396 IESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTV 475 (725)
Q Consensus 396 pe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~~~~~l 475 (725)
||++++|+++|++++++++|++||+||||+++++++++.+.+|+||+|+|||+|++.+|+|||++|+.|++++++.+..+
T Consensus 398 ~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~ 477 (708)
T PRK11154 398 FEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVAL 477 (708)
T ss_pred cccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHhhCC
Q 004891 476 GKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFP 555 (725)
Q Consensus 476 ~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv~~~dID~~~~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~ 555 (725)
++.+||.||+++|+||||+||++.++++|+++++++|++++|||.++.++|||+|||+++|.+|+|+++++++.+++.++
T Consensus 478 ~~~~gk~pv~v~d~pGfi~nRl~~~~~~EA~~lv~eGv~~~dID~a~~~~G~p~GPf~~~D~~Gld~~~~i~~~l~~~~~ 557 (708)
T PRK11154 478 AKKQGKTPIVVRDGAGFYVNRILAPYINEAARLLLEGEPIEHIDAALVKFGFPVGPITLLDEVGIDVGTKIIPILEAALG 557 (708)
T ss_pred HHHcCCceEEEeccCcHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhhhHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999998
Q ss_pred CCCCCcHHHHHHHHcCCCccccCceeeeccCCCC---CCCCCCchhHHHHHhhhccCCCCCCCCccccHHHHHHHHHHHH
Q 004891 556 DRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK---PKPDPSVLPIIEECRRLSNIMPGGKVPISVTEKEIVEMILFPV 632 (725)
Q Consensus 556 ~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~ 632 (725)
+++.|++++++|+++|++|+|||+|||+|+++.. +..++.+...+. ..+ .++++..+|.||++.++
T Consensus 558 ~~~~~~~~l~~~v~~g~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~-------~~~----~~~~~~g~i~~Rll~~~ 626 (708)
T PRK11154 558 ERFSAPAAFDKLLNDDRKGRKNGRGFYLYGQKGKKSKKQVDESVYPLLG-------ITP----QSRLSANEIAERCVMLM 626 (708)
T ss_pred CCCCCCHHHHHHHHCCCCcccCCceEEECCCCcccccccCCHHHHHHhc-------cCC----CCCCCHHHHHHHHHHHH
Confidence 8777889999999999999999999999975322 334444433321 111 11478899999999999
Q ss_pred HHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCCCCC
Q 004891 633 VNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLS 712 (725)
Q Consensus 633 ~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~gf~ 712 (725)
+|||++|+++||+.+++|||.+|++|+|||+|+||||+++|.+|++.+++.++.|++.++++|.|+++|++|+++|++||
T Consensus 627 ~nEa~~ll~eGvva~~~dID~~~~~G~G~p~~~gGp~~~~D~~Gld~~~~~~~~l~~~~~~~~~p~~~l~~~~~~~~~f~ 706 (708)
T PRK11154 627 LNEAVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGDRFTPCERLVEMAERGESFY 706 (708)
T ss_pred HHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhcCCccCCCHHHHHHHHcCCCCC
Confidence 99999999999966999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred C
Q 004891 713 A 713 (725)
Q Consensus 713 ~ 713 (725)
.
T Consensus 707 ~ 707 (708)
T PRK11154 707 P 707 (708)
T ss_pred C
Confidence 3
No 6
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=100.00 E-value=1.4e-73 Score=635.98 Aligned_cols=403 Identities=32% Similarity=0.520 Sum_probs=358.3
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (725)
Q Consensus 307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (725)
+++||+|||+|.||++||.+++++|++|++||++++.++++.+++++.++.++++|.+++++.+..+++++.+++++.++
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~ 83 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA 83 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCCH
Q 004891 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (725)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~ 466 (725)
+||+|||||||+.++|+.+|+++.+.+++++||+||||++++++++..+.+|.+++|+|||+|++.++++|+++|+.|++
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~~Ts~ 163 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAA 163 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004891 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 544 (725)
Q Consensus 467 e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~G-v~~~dID~~~-~~~G~p~Gpf~~~D~~Gld~~~ 544 (725)
++++++.++++.+||.||+++++|||++||++.++++|++.++++| ++|++||.++ .++|||||||+++|++|+|+.+
T Consensus 164 e~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~~~~G~~mGPf~l~D~~Gldv~~ 243 (503)
T TIGR02279 164 EVAEQLYETALAWGKQPVHCHSTPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNF 243 (503)
T ss_pred HHHHHHHHHHHHcCCeeeEeCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhhhHHHH
Confidence 9999999999999999999999999999999999999999999998 5999999999 7899999999999999999999
Q ss_pred HHHHHHHhhC-CCCCC-CcHHHHHHHHcCCCccccCceeeeccCCCCCCCC-----------------------------
Q 004891 545 ATSKEFDKAF-PDRSF-QSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPD----------------------------- 593 (725)
Q Consensus 545 ~~~~~l~~~~-~~~~~-~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~~~~~~----------------------------- 593 (725)
++++.+++.+ +++.| |++++++|+++|++|+|||+|||+|+++......
T Consensus 244 ~v~~~~~~~~~~~~~~~p~~~~~~~v~~G~lG~KtG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (503)
T TIGR02279 244 AVTCSVFNAFWQDRRFLPSLVQQELVIAGRLGRKSGLGVYDYREEAEAVVPLEAVSDSFSPRVTVVGDIGAAAPLLARLE 323 (503)
T ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHCCCCccccCCEeeeCCCCCCCCCCccccccccccceeecccccchhhHHHHHH
Confidence 9999988874 56555 7889999999999999999999999764322111
Q ss_pred -----------------------------------------CCchhHHHHHhhhcc--CCCC------------------
Q 004891 594 -----------------------------------------PSVLPIIEECRRLSN--IMPG------------------ 612 (725)
Q Consensus 594 -----------------------------------------~~~~~~~~~~~~~~~--~~~~------------------ 612 (725)
+++..++...+.... +.+.
T Consensus 324 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~vEv~~~~~Ts~e~~~~a~~~~~~~ 403 (503)
T TIGR02279 324 AAGIKVEKKSGRGVTQIGDALLALTDGRTAQARAIELARPNLVLFDLVLDYSTGKRIAIAAAAVNPDSATRKAIYYLQQA 403 (503)
T ss_pred hccccccccccccccccchhhhhhccccchhhhhhhcCCCCchHHHHHhhhcccCeEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 000000000000000 0110
Q ss_pred CCCCccccH--HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHH
Q 004891 613 GKVPISVTE--KEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQL 690 (725)
Q Consensus 613 ~~~~~~~~~--~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~ 690 (725)
++.+..+.+ ..|+||++++++|||++++++||+ +++|||.+|++|+|||+ |||+|+|.+|+|.++++++.|++.
T Consensus 404 Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGva-s~~dID~a~~~g~G~P~---GP~~~~D~~Gld~~~~~l~~l~~~ 479 (503)
T TIGR02279 404 GKKVLQIADYPGLLILRTVAMLANEAADAVLQGVA-SAQDIDTAMRLGVNYPY---GPLAWAAQLGWQRILRVLENLQHH 479 (503)
T ss_pred CCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCc---CHHHHHHHhCHHHHHHHHHHHHHH
Confidence 111101222 579999999999999999999999 99999999999999999 999999999999999999999999
Q ss_pred hC-CCCCCCHHHHHHHHcCCCCCC
Q 004891 691 YG-NFFKPSRFLEERATKGIPLSA 713 (725)
Q Consensus 691 ~~-~~~~p~~~l~~~~~~g~gf~~ 713 (725)
++ ++|.|+++|+++++.|.+|.+
T Consensus 480 ~~~~~~~p~~~L~~~v~~g~~~~~ 503 (503)
T TIGR02279 480 YGEERYRPSSLLRRRALLGSGYED 503 (503)
T ss_pred cCCCcCCcCHHHHHHHHcCCCcCC
Confidence 98 499999999999999999853
No 7
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=5.5e-72 Score=625.34 Aligned_cols=405 Identities=31% Similarity=0.544 Sum_probs=360.6
Q ss_pred CCCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccc
Q 004891 305 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (725)
Q Consensus 305 ~~~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (725)
.++++||+|||+|.||++||.+++++|++|++||++++.++++.+++++.+++++++|.++.++.+..+++++.+++++.
T Consensus 4 ~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~ 83 (507)
T PRK08268 4 LPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD 83 (507)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCC
Q 004891 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 464 (725)
Q Consensus 385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t 464 (725)
+++||+|||||||+.++|+.+|++++..+++++|++||||++++++++..+.+|+||+|+|||+|++.++++|+++|+.|
T Consensus 84 ~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~T 163 (507)
T PRK08268 84 LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLAT 163 (507)
T ss_pred hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCCccHHHHHHhhchHH
Q 004891 465 SAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLPIGPFQLLDLAGYGV 542 (725)
Q Consensus 465 ~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~G-v~~~dID~~~-~~~G~p~Gpf~~~D~~Gld~ 542 (725)
++++++++.++++.+||.|++++++|||++||++.++++|++.++++| +++++||.++ .++|||||||+++|.+|+|+
T Consensus 164 s~~~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al~~~~G~~mGPf~l~D~~Gldv 243 (507)
T PRK08268 164 DPAVADALYALARAWGKTPVRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLDV 243 (507)
T ss_pred CHHHHHHHHHHHHHcCCceEEecCCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhchHH
Confidence 999999999999999999999999999999999999999999999998 5999999999 78999999999999999999
Q ss_pred HHHHHHHHHhhC-CCCCC-CcHHHHHHHHcCCCccccCceeeeccCCCC-CCCCCCc--------------------hhH
Q 004891 543 AAATSKEFDKAF-PDRSF-QSPLVDLLLKSGRNGKANGKGLYTYEKGSK-PKPDPSV--------------------LPI 599 (725)
Q Consensus 543 ~~~~~~~l~~~~-~~~~~-~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~~-~~~~~~~--------------------~~~ 599 (725)
.+++.+.+...+ ++..| +++++++|+++|++|+|||+|||+|+++++ +.++++. ..+
T Consensus 244 ~~~v~~~~~~~~~~~~~~~~~~~~~~lv~~g~lG~ksG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (507)
T PRK08268 244 NHAVMESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADGAKQPPAEAAPPAALPPVWVSADVEGDLAALARL 323 (507)
T ss_pred HHHHHHHHHHHhcCCCcCCccHHHHHHHHCCCCccccCCeeeECCCCCCCCCCCccccccCccccccccccchhHHHHHH
Confidence 999999988764 44444 789999999999999999999999975432 2222221 111
Q ss_pred HHH----------------------------Hhhhc-----------cCCCCCC-CCccc--------------------
Q 004891 600 IEE----------------------------CRRLS-----------NIMPGGK-VPISV-------------------- 619 (725)
Q Consensus 600 ~~~----------------------------~~~~~-----------~~~~~~~-~~~~~-------------------- 619 (725)
+.. ..... -+.|... ++.++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~ 403 (507)
T PRK08268 324 LERLGATIETGEGPSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQ 403 (507)
T ss_pred HHhhccccccccccccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 100 00000 0001000 00011
Q ss_pred ----------cHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHH
Q 004891 620 ----------TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQ 689 (725)
Q Consensus 620 ----------~~~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~ 689 (725)
+...|.||++.+++|||++|+++||+ |++|||.+|++|+|||+ |||+|+|.+|++.++++++.+++
T Consensus 404 ~gk~pi~v~d~~Gfi~nRll~~~~nEa~~ll~eGva-s~~dID~a~~~g~G~p~---GP~~~~D~~Gld~~~~~~~~l~~ 479 (507)
T PRK08268 404 DGKAVSVIRDSPGFVAQRTVAMIVNEAADIAQQGIA-SPADIDLAMRLGLNYPL---GPLAWGDRLGAARILRVLENLQA 479 (507)
T ss_pred cCCeeEEeCCCccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCc---CHHHHHHHhCHHHHHHHHHHHHH
Confidence 35579999999999999999999998 99999999999999999 99999999999999999999999
Q ss_pred HhCC-CCCCCHHHHHHHHcCCCCCC
Q 004891 690 LYGN-FFKPSRFLEERATKGIPLSA 713 (725)
Q Consensus 690 ~~~~-~~~p~~~l~~~~~~g~gf~~ 713 (725)
.+++ +|.|+++|++|+++|+.||.
T Consensus 480 ~~g~~~~~p~~ll~~~v~~G~~~~~ 504 (507)
T PRK08268 480 LYGDPRYRPSPWLRRRAALGLSLRS 504 (507)
T ss_pred HhCCCcCCcCHHHHHHHHcCCCcCC
Confidence 9995 99999999999999999976
No 8
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=100.00 E-value=6.3e-64 Score=514.95 Aligned_cols=280 Identities=40% Similarity=0.682 Sum_probs=271.2
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (725)
Q Consensus 307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (725)
.++||+|||+|.||++||..++.+|++|+++|++++.++++...+.+.+++++++|.+++++.+..++++++++++.+++
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~ 81 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALK 81 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhc
Confidence 57999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCCH
Q 004891 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (725)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~ 466 (725)
+||+|||+|+|++++|+++|++++.+++|++|++||||+++++++++.+.+|+||+|+|||||++.|++|||++|..|++
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~ 161 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSD 161 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004891 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 544 (725)
Q Consensus 467 e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv-~~~dID~~~-~~~G~p~Gpf~~~D~~Gld~~~ 544 (725)
++++++.+|.+.+||.|++++|.||||+||++.++++||++++++|+ +|++||.++ .++|||||||+++|.+|+|+.+
T Consensus 162 e~~~~~~~~~~~igK~~vv~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~pmGpf~l~D~~GlD~~~ 241 (307)
T COG1250 162 ETVERVVEFAKKIGKTPVVVKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVML 241 (307)
T ss_pred HHHHHHHHHHHHcCCCCEeecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCccHHHHHHHHhHHHHH
Confidence 99999999999999999888999999999999999999999999995 999999999 7899999999999999999999
Q ss_pred HHHHHHHhhCCCC-CC-CcHHHHHHHHcCCCccccCceeeeccC
Q 004891 545 ATSKEFDKAFPDR-SF-QSPLVDLLLKSGRNGKANGKGLYTYEK 586 (725)
Q Consensus 545 ~~~~~l~~~~~~~-~~-~~~~l~~~v~~g~~G~k~g~Gfy~y~~ 586 (725)
++++.+++.++++ .+ |++++++|++.|++|+|||+|||+|++
T Consensus 242 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~ 285 (307)
T COG1250 242 HIMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG 285 (307)
T ss_pred HHHHHHHHhcCCCccccccHHHHHHHhcccccccCCCcceeccc
Confidence 9999999888843 44 789999999999999999999999975
No 9
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=9e-63 Score=464.41 Aligned_cols=280 Identities=33% Similarity=0.592 Sum_probs=266.3
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHH-----HHhhcCccccc
Q 004891 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKA-----NNALKMLKGVL 380 (725)
Q Consensus 306 ~~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~-----~~~~~~i~~~~ 380 (725)
.+++.|+|||+|.||++||+..+.+|++|+++|.+++.+.++.+.|.+.+.+...++..+.... +..+.+|..++
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t 88 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST 88 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence 3678999999999999999999999999999999999999999999999999998887765543 67788999999
Q ss_pred Cc-ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEe
Q 004891 381 DY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV 459 (725)
Q Consensus 381 ~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii 459 (725)
+. +.++++|+|||++.|++++|+.+|++|+..+++++|++||||++.+++++..+.+|.||.|+|||||++.|++||++
T Consensus 89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEVi 168 (298)
T KOG2304|consen 89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEVI 168 (298)
T ss_pred CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhhh
Confidence 98 66799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHh
Q 004891 460 RTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDL 537 (725)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv-~~~dID~~~-~~~G~p~Gpf~~~D~ 537 (725)
.+..|++|+++.+..|.+.+||++|-++|.||||+||++.+|++||+++++.|. +.+|||.+| .|.|+|||||++.|.
T Consensus 169 r~~~TS~eTf~~l~~f~k~~gKttVackDtpGFIVNRlLiPyl~ea~r~yerGdAskeDIDtaMklGagyPMGPfEL~Dy 248 (298)
T KOG2304|consen 169 RTDDTSDETFNALVDFGKAVGKTTVACKDTPGFIVNRLLIPYLMEAIRMYERGDASKEDIDTAMKLGAGYPMGPFELADY 248 (298)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCceeecCCCchhhhHHHHHHHHHHHHHHHhcCCcHhhHHHHHhccCCCCCChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999996 999999999 999999999999999
Q ss_pred hchHHHHHHHHHHHhhCCCC-CC-CcHHHHHHHHcCCCccccCceeeecc
Q 004891 538 AGYGVAAATSKEFDKAFPDR-SF-QSPLVDLLLKSGRNGKANGKGLYTYE 585 (725)
Q Consensus 538 ~Gld~~~~~~~~l~~~~~~~-~~-~~~~l~~~v~~g~~G~k~g~Gfy~y~ 585 (725)
+|||++..+++.+++.+++. .| |+|++.++|++|++|+|+|+|||+|.
T Consensus 249 vGLDt~kfvmdgwhe~~pe~~~f~psPll~klVaegklGrKtg~GfY~Yk 298 (298)
T KOG2304|consen 249 VGLDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGKLGRKTGEGFYKYK 298 (298)
T ss_pred hhHHHHHHHHHHHHhcCCcccccCCChHHHHHHhccccccccCccceecC
Confidence 99999999999999998553 44 99999999999999999999999993
No 10
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=8.9e-59 Score=485.04 Aligned_cols=280 Identities=34% Similarity=0.558 Sum_probs=270.7
Q ss_pred CCCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccc
Q 004891 305 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (725)
Q Consensus 305 ~~~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (725)
.++++||+|||+|.||.+||..++++|++|++||++++.++++.+++++.+++++++|.+++.+.+..+++++.+++++.
T Consensus 2 ~~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 81 (286)
T PRK07819 2 SDAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD 81 (286)
T ss_pred CCCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHHhC-CCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCC
Q 004891 385 FKDVDMVIEAVIESVPLKQKIFSELEKAC-PPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTER 463 (725)
Q Consensus 385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~-~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~ 463 (725)
+++||+|||||||++++|+++|.++++.+ ++++|++||||+++++.++....+++|++|+|||+|++.++++||+++..
T Consensus 82 ~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~ 161 (286)
T PRK07819 82 FADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLV 161 (286)
T ss_pred hCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCC
Confidence 99999999999999999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH-HcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhch
Q 004891 464 TSAQVILDLMTVGK-IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGY 540 (725)
Q Consensus 464 t~~e~~~~~~~l~~-~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv-~~~dID~~~-~~~G~p~Gpf~~~D~~Gl 540 (725)
|++++++++.+++. .+||.|++++|.|||++||++.+++||+++|+++|+ +++|||.++ .++|||+|||+++|.+|+
T Consensus 162 T~~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~nRi~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G~p~Gpf~~~D~~Gl 241 (286)
T PRK07819 162 TSEATVARAEEFASDVLGKQVVRAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMVLGCAHPMGPLRLSDLVGL 241 (286)
T ss_pred CCHHHHHHHHHHHHHhCCCCceEecCCCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhcc
Confidence 99999999999988 599999999999999999999999999999999997 999999999 899999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCC-CcHHHHHHHHcCCCccccCceeeec
Q 004891 541 GVAAATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKANGKGLYTY 584 (725)
Q Consensus 541 d~~~~~~~~l~~~~~~~~~-~~~~l~~~v~~g~~G~k~g~Gfy~y 584 (725)
|+++++++.+++.+++++| |++++++|+++|++|+|+|+|||+|
T Consensus 242 d~~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~GfY~y 286 (286)
T PRK07819 242 DTVKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY 286 (286)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCHHHHHHHHCCCCcccCCCEeccC
Confidence 9999999999999988555 8899999999999999999999998
No 11
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=5e-60 Score=480.65 Aligned_cols=378 Identities=39% Similarity=0.642 Sum_probs=348.8
Q ss_pred CcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCCCEEEEeccCC
Q 004891 319 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIES 398 (725)
Q Consensus 319 mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVIeavpe~ 398 (725)
||++||..+..+|++|++.|.|...++++...+...+.+.+.++.++..+.......+..+.|++.+++||+|||+|.||
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav~ed 80 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAVFED 80 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccchhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCCHHHHHHHHHHHHH
Q 004891 399 VPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKI 478 (725)
Q Consensus 399 ~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~~~~~l~~~ 478 (725)
+++|++++.+|++.++++||+.||||++++.++++.+..+++++|+|||+|.+.++++|++.+..|+..++..+.+....
T Consensus 81 l~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~ 160 (380)
T KOG1683|consen 81 LELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSP 160 (380)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHc-CCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHhhCCCC
Q 004891 479 IKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSL-GVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR 557 (725)
Q Consensus 479 lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~-Gv~~~dID~~~~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~ 557 (725)
.|+.|+++++++||.+||++.+|.+++.+++.+ |++|.++|.+...||||+||+++.|..|+|+..++...+...++++
T Consensus 161 ~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 161 AGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGPR 240 (380)
T ss_pred cCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccch
Confidence 999999999999999999999999999999888 9999999999999999999999999999999888877766665544
Q ss_pred CCCcHHHHHHHHcCCCccccCceeeeccCCCCCCCCC-CchhHHHHHhhhccCCCCCCCCccccHHHHHHHHHHHHHHHH
Q 004891 558 SFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDP-SVLPIIEECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNES 636 (725)
Q Consensus 558 ~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea 636 (725)
+.++|++.|+.|+|||+|||.|+.+..+..++ +..+.+... . ..+ ..+..+++|+++|++++.+|||
T Consensus 241 -----~~eel~~~~~~g~kT~kg~y~y~~~l~k~~~~~~~~~~~r~l---~-~~~---~~r~~~~ed~v~~~~~p~VnEa 308 (380)
T KOG1683|consen 241 -----IEEELLEKGRAGIKTGKGIYPYARGLTKKMKRDEMEALLRRL---S-LTP---NPRVADDEDFVEFLLSPFVNEA 308 (380)
T ss_pred -----hHHHHHHHHhhhhhccCcccccccccccCCChhhHHHHHHHh---c-cCC---CcccCCHHHHHHHHhhHHHHHH
Confidence 78899999999999999999998875554444 223333322 2 111 1235789999999999999999
Q ss_pred HHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCCCCCC
Q 004891 637 CRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSA 713 (725)
Q Consensus 637 ~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~gf~~ 713 (725)
++|++|||..+++++|.+.++|+|||+++||||.|+|.+|+++++++|+.|+. |+|+.+|++++++|+-||+
T Consensus 309 l~~l~EGi~~~~~~~Di~~v~G~gfp~~~GGp~~~~d~~G~~ki~~~l~~~~~-----f~P~~~l~~~a~~~~~~~~ 380 (380)
T KOG1683|consen 309 LRCLLEGLKASPSDGDIASVFGLGFPPFRGGPMRFVDLYGADKIVSRLQKWSS-----FEPCQLLKDHAKSGKKFYN 380 (380)
T ss_pred HHHHHHHHhcCccccceeeeeccCCCCcCCCceeeeeccChHHHHHHHHHHhc-----CCHHHHHHHHHhhhccccC
Confidence 99999999999999999999999999999999999999999999999999976 9999999999999999985
No 12
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.9e-54 Score=453.68 Aligned_cols=279 Identities=29% Similarity=0.443 Sum_probs=264.6
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHH-HHHhhcCcccccCc-cc
Q 004891 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK-ANNALKMLKGVLDY-SE 384 (725)
Q Consensus 307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~-~~~~~~~i~~~~~~-~~ 384 (725)
.++||+|||+|.||++||..++++|++|++||++++.++++.+.+++.++...+.+.++.++ .+...++++.++++ +.
T Consensus 2 ~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a 81 (287)
T PRK08293 2 DIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA 81 (287)
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence 46899999999999999999999999999999999999999998888889888888888776 66677889888888 46
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCC
Q 004891 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 464 (725)
Q Consensus 385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t 464 (725)
+++||+||+|+||+.++|+++++++.+.+++++||++|+|+++++++++.+.+++||+|+|||+|++.++++|+++++.|
T Consensus 82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~~~~t 161 (287)
T PRK08293 82 VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGT 161 (287)
T ss_pred hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCeeEEE-cCCcchhhhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchH
Q 004891 465 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYG 541 (725)
Q Consensus 465 ~~e~~~~~~~l~~~lGk~~v~v-~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv-~~~dID~~~-~~~G~p~Gpf~~~D~~Gld 541 (725)
++++++.+.++++.+|+.|+++ +|.|||++||++.++++||++++++|+ +|+|||.++ .++|+|+|||+++|.+|+|
T Consensus 162 ~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~g~~~Gp~~~~D~~Gld 241 (287)
T PRK08293 162 DPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVGLD 241 (287)
T ss_pred CHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcCHHHHHHHhchH
Confidence 9999999999999999999999 599999999999999999999999997 999999999 9999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCC--CcHHHHHHHHcCCCccccCceeeecc
Q 004891 542 VAAATSKEFDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYE 585 (725)
Q Consensus 542 ~~~~~~~~l~~~~~~~~~--~~~~l~~~v~~g~~G~k~g~Gfy~y~ 585 (725)
++.++++.+++.++++++ |++++++|+++|++|+|+|+|||+|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~ 287 (287)
T PRK08293 242 TAYNITSNWAEATDDENAKKAAALLKEYIDKGKLGVATGEGFYNYP 287 (287)
T ss_pred HHHHHHHHHHHHhCCcccccchHHHHHHHHCCCCcccCCCccccCc
Confidence 999999999999988764 88999999999999999999999994
No 13
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.5e-53 Score=448.69 Aligned_cols=280 Identities=32% Similarity=0.514 Sum_probs=267.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (725)
++||+|||+|.||.+||..|+++|++|++||++++.++++.+++...++..++.+.++..+.+....+++.++++ +.++
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA 80 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence 478999999999999999999999999999999999999988888888888889999988888888899888888 6789
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCCH
Q 004891 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (725)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~ 466 (725)
+||+||+|+|++.++|+.+++++.+.+++++|+++|+|+++++++++.+.++.+++|+||++|++.++++|+++|+.|++
T Consensus 81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t~~ 160 (288)
T PRK09260 81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSD 160 (288)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004891 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 544 (725)
Q Consensus 467 e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv-~~~dID~~~-~~~G~p~Gpf~~~D~~Gld~~~ 544 (725)
+++++++++++.+|+.|++++|.|||++||++.++++||++|+++|+ +++|||.++ .++|||+|||+++|.+|+|++.
T Consensus 161 ~~~~~~~~~l~~lg~~~v~v~d~~Gf~~nRl~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~p~Gp~~~~D~~Gl~~~~ 240 (288)
T PRK09260 161 ETVQVAKEVAEQMGKETVVVNEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELGDLVGLDTRL 240 (288)
T ss_pred HHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999997 999999999 8999999999999999999999
Q ss_pred HHHHHHHhhCCCCCCCcHHHHHHHHcCCCccccCceeeeccCC
Q 004891 545 ATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKG 587 (725)
Q Consensus 545 ~~~~~l~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~ 587 (725)
++++.+++.+++++.|++++.+|+++|++|+|+|+|||+|+++
T Consensus 241 ~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~ 283 (288)
T PRK09260 241 NNLKYLHETLGEKYRPAPLLEKYVKAGRLGRKTGRGVYDYTNR 283 (288)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCCCCccccCCEEEECCCC
Confidence 9999999999887779999999999999999999999999764
No 14
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.5e-53 Score=447.54 Aligned_cols=278 Identities=36% Similarity=0.617 Sum_probs=267.3
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (725)
Q Consensus 307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (725)
+|+||+|||+|.||.+||..++++|++|++||++++.++++.+++++.++...+.|.++..+......+++.+++++.++
T Consensus 2 ~~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 81 (282)
T PRK05808 2 GIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLK 81 (282)
T ss_pred CccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhc
Confidence 47899999999999999999999999999999999999999999999999999999999888888888898888887899
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCCH
Q 004891 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (725)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~ 466 (725)
+||+||+|+||+.++|+++++++.++++++++|+|+||+++++.+++.+.++.|++++||++|++.++++|+++++.|++
T Consensus 82 ~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~ 161 (282)
T PRK05808 82 DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSD 161 (282)
T ss_pred cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004891 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 544 (725)
Q Consensus 467 e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv-~~~dID~~~-~~~G~p~Gpf~~~D~~Gld~~~ 544 (725)
++++.+.++++.+|+.|++++|.|||++||++.+++||+++++++|+ +|+|||.++ .++|||+|||+++|.+|+|++.
T Consensus 162 e~~~~~~~l~~~lGk~pv~~~d~~g~i~~Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g~g~p~Gp~~~~D~~Gl~~~~ 241 (282)
T PRK05808 162 ATHEAVEALAKKIGKTPVEVKNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMKLGCNHPIGPLALADLIGLDTCL 241 (282)
T ss_pred HHHHHHHHHHHHcCCeeEEecCccChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999997 999999999 8999999999999999999999
Q ss_pred HHHHHHHhhCCCCCC-CcHHHHHHHHcCCCccccCceeeec
Q 004891 545 ATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKANGKGLYTY 584 (725)
Q Consensus 545 ~~~~~l~~~~~~~~~-~~~~l~~~v~~g~~G~k~g~Gfy~y 584 (725)
++++.+++.++++.| |++++++|+++|++|+|+|+|||+|
T Consensus 242 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y 282 (282)
T PRK05808 242 AIMEVLYEGFGDSKYRPCPLLRKMVAAGWLGRKTGRGFYDY 282 (282)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCcccCC
Confidence 999999999987555 8899999999999999999999998
No 15
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.2e-53 Score=448.12 Aligned_cols=279 Identities=30% Similarity=0.544 Sum_probs=264.0
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHH---HHHhhHHcCCCCHHHHHHhhcCcccccCcc
Q 004891 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEA---NVRGLVTRGKLTQDKANNALKMLKGVLDYS 383 (725)
Q Consensus 307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~---~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 383 (725)
+++||+|||+|.||.+||..++++|++|++||++++.++++.+++++ .++..++.+.++..+.+....++..+++++
T Consensus 2 ~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 81 (291)
T PRK06035 2 DIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE 81 (291)
T ss_pred CCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH
Confidence 47899999999999999999999999999999999999988877765 366778888888888888888888888877
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCC
Q 004891 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTER 463 (725)
Q Consensus 384 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~ 463 (725)
.+++||+||+|+|++.++|+++++++.+.+++++||+|+||+++++++++.+.+++|++|+|||+|++.++++|+++++.
T Consensus 82 ~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~g~~ 161 (291)
T PRK06035 82 SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAAL 161 (291)
T ss_pred HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEEeCCCC
Confidence 88999999999999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchH
Q 004891 464 TSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYG 541 (725)
Q Consensus 464 t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv-~~~dID~~~-~~~G~p~Gpf~~~D~~Gld 541 (725)
|++++++.+.++++.+|+.|++++|.|||++||++.++++||++++++|+ +++|||+++ .++|+|+|||+++|.+|+|
T Consensus 162 T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~~~ea~~~~~~g~a~~~~iD~~~~~~~g~~~Gp~~~~D~~Gl~ 241 (291)
T PRK06035 162 TSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIGID 241 (291)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcCCCccCHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999997 999999999 8999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCC-CcHHHHHHHHcCCCcccc-----Cceeeecc
Q 004891 542 VAAATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKAN-----GKGLYTYE 585 (725)
Q Consensus 542 ~~~~~~~~l~~~~~~~~~-~~~~l~~~v~~g~~G~k~-----g~Gfy~y~ 585 (725)
++.++++.+++.++++.| |++++++|+++|++|+|| |+|||+|.
T Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~g~~G~k~~~~~~g~Gfy~y~ 291 (291)
T PRK06035 242 TVYHIAEYLYEETGDPQFIPPNSLKQMVLNGYVGDKKVKYGSKGGWFDYY 291 (291)
T ss_pred HHHHHHHHHHHHcCCCcCCccHHHHHHHHCCCCcCCCCCCCCCceeeecC
Confidence 999999999999988665 889999999999999999 99999993
No 16
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=100.00 E-value=3.8e-53 Score=447.42 Aligned_cols=282 Identities=32% Similarity=0.577 Sum_probs=270.1
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (725)
Q Consensus 307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (725)
+++||+|||+|.||.+||..|+++|++|++||++++.++++.+++++.++++++.|.++.++.+..++++.++++++.++
T Consensus 3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
T PLN02545 3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELR 82 (295)
T ss_pred CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhC
Confidence 57899999999999999999999999999999999999999999999999999999999998888888888888888899
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCCH
Q 004891 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (725)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~ 466 (725)
+||+||+||||++++|+.+|+++.+.+++++||+||||+++++++++.+.++.+++++||++|++.++++|+++++.|++
T Consensus 83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~~ 162 (295)
T PLN02545 83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSD 162 (295)
T ss_pred CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004891 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 544 (725)
Q Consensus 467 e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv-~~~dID~~~-~~~G~p~Gpf~~~D~~Gld~~~ 544 (725)
++++.+.++++.+|+.++++++.|||++||++.++++|+++++++|+ +++|||.++ .++|||+|||+++|.+|+|++.
T Consensus 163 e~~~~~~~ll~~lG~~~~~~~d~~g~i~nri~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~~~Gp~~~~D~~Gl~~~~ 242 (295)
T PLN02545 163 EVFDATKALAERFGKTVVCSQDYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIGLDTCL 242 (295)
T ss_pred HHHHHHHHHHHHcCCeeEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCCCHHHHHHHhchHHHH
Confidence 99999999999999999999999999999999999999999999997 999999999 8999999999999999999999
Q ss_pred HHHHHHHhhCCCCCC-CcHHHHHHHHcCCCccccCceeeeccCCC
Q 004891 545 ATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKANGKGLYTYEKGS 588 (725)
Q Consensus 545 ~~~~~l~~~~~~~~~-~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~ 588 (725)
++++.+++.++++.| |++++++|+++|++|+|+|+|||+|++++
T Consensus 243 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~ 287 (295)
T PLN02545 243 SIMKVLHEGLGDSKYRPCPLLVQYVDAGRLGRKSGRGVYHYDGKK 287 (295)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCcccCCCeeeECCCCC
Confidence 999999999987655 88999999999999999999999997754
No 17
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.5e-52 Score=442.19 Aligned_cols=282 Identities=32% Similarity=0.521 Sum_probs=268.0
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccc
Q 004891 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (725)
Q Consensus 306 ~~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 385 (725)
++++||+|||+|.||.+||..++++|++|++||++++.++++.+++.+.++..++.|.++..+....+.+++.+++++.+
T Consensus 2 ~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 81 (292)
T PRK07530 2 MAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDL 81 (292)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHh
Confidence 35789999999999999999999999999999999999999988898888888889999888888888889988888889
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCC
Q 004891 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS 465 (725)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~ 465 (725)
++||+||+|+||+.++|+.+++++.+.++++++|+|+||+++++.+++.+.++++++|+||++|++.++++|++++..|+
T Consensus 82 ~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~~t~ 161 (292)
T PRK07530 82 ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATD 161 (292)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHH
Q 004891 466 AQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVA 543 (725)
Q Consensus 466 ~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv-~~~dID~~~-~~~G~p~Gpf~~~D~~Gld~~ 543 (725)
+++++.+.++++.+|+.|++++|.|||++||++.++++|++.++++|+ ++++||.++ .++|||+|||+++|.+|+|++
T Consensus 162 ~~~~~~~~~~~~~~gk~~v~~~d~pg~i~nRl~~~~~~ea~~~~~~g~~~~~~iD~~~~~g~g~~~GP~~~~D~~Gl~~~ 241 (292)
T PRK07530 162 EATFEAAKEFVTKLGKTITVAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMKLGANHPMGPLELADFIGLDTC 241 (292)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCcCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHH
Confidence 999999999999999999999999999999999999999999999998 999999999 899999999999999999999
Q ss_pred HHHHHHHHhhCCCCCC-CcHHHHHHHHcCCCccccCceeeeccCC
Q 004891 544 AATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKANGKGLYTYEKG 587 (725)
Q Consensus 544 ~~~~~~l~~~~~~~~~-~~~~l~~~v~~g~~G~k~g~Gfy~y~~~ 587 (725)
.++++.+++.++++.| |++++.+|+++|++|+|+|+|||+|+++
T Consensus 242 ~~~~~~~~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~Gfy~y~~~ 286 (292)
T PRK07530 242 LSIMQVLHDGLADSKYRPCPLLVKYVEAGWLGRKTGRGFYDYRGE 286 (292)
T ss_pred HHHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeeCCCC
Confidence 9999999999887555 8899999999999999999999999654
No 18
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=4e-51 Score=431.30 Aligned_cols=268 Identities=28% Similarity=0.411 Sum_probs=255.1
Q ss_pred CcHHHHHHHHHCCCcEEEEeCChH-------HHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccC--c-ccccCC
Q 004891 319 MGSGIATAHILNNIYVVLKEVNSE-------YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--Y-SEFKDV 388 (725)
Q Consensus 319 mG~~iA~~l~~~G~~V~~~d~~~e-------~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~--~-~~l~~a 388 (725)
||++||..++.+|++|++||++++ .++++.+++++.+++++++|.+++++.+..+++++++++ . +++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 899999999999999999999995 477889999999999999999999999999999998765 3 668999
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCCHHH
Q 004891 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQV 468 (725)
Q Consensus 389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~ 468 (725)
|+|||||||+.++|+++|+++.+.+++++||+||||+++++++++.+.+|+|++|+|||+||+.+|+|||++++.|++++
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e~ 160 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAV 160 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---ccHHHHHHhhchHHH
Q 004891 469 ILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQLLDLAGYGVA 543 (725)
Q Consensus 469 ~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~G-v~~~dID~~~-~~~G~p---~Gpf~~~D~~Gld~~ 543 (725)
++++.++++.+||.|+++++.|||++||++.++++|++.++++| +++++||.++ .++|+| +|||+++|.+|+|++
T Consensus 161 ~~~~~~ll~~lGk~~v~v~d~~Gfi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~ 240 (314)
T PRK08269 161 VDRLAALLERIGKVPVVCGPSPGYIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDIL 240 (314)
T ss_pred HHHHHHHHHHcCCcEEEecCCCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999997 5999999999 899999 599999999999999
Q ss_pred HHHHHHHHhhCCC-CCCCcHHHHHHHHcCCCccccCceeeeccC
Q 004891 544 AATSKEFDKAFPD-RSFQSPLVDLLLKSGRNGKANGKGLYTYEK 586 (725)
Q Consensus 544 ~~~~~~l~~~~~~-~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~ 586 (725)
+++++.+++.+++ ++.|++++++|+++|++|+|||+|||+|++
T Consensus 241 ~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~ksG~GfY~y~~ 284 (314)
T PRK08269 241 YYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDYAG 284 (314)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHCCCCcccCCCcceeCCC
Confidence 9999999998888 445899999999999999999999999964
No 19
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=4e-51 Score=428.88 Aligned_cols=277 Identities=23% Similarity=0.318 Sum_probs=248.4
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cc
Q 004891 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (725)
Q Consensus 306 ~~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (725)
++++||+|||+|.||++||..++.+|++|++||++++.++++.+++.+.++.+.+.+. ... ...++++.++++ +.
T Consensus 5 ~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~-~~~---~~~~~i~~~~~l~~a 80 (321)
T PRK07066 5 TDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGL-APG---ASPARLRFVATIEAC 80 (321)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-Chh---hHHhhceecCCHHHH
Confidence 4688999999999999999999999999999999999999999999988888888773 322 234578888888 56
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCC
Q 004891 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 464 (725)
Q Consensus 385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t 464 (725)
+++||+|||||||++++|+++|+++.+.+++++||+||||+++++++++.+.+|+||+++||||||+.+|+|||++|+.|
T Consensus 81 v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T 160 (321)
T PRK07066 81 VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERT 160 (321)
T ss_pred hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCeeEEE-cCCcchhhhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCC---ccHHHHHHhh
Q 004891 465 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLP---IGPFQLLDLA 538 (725)
Q Consensus 465 ~~e~~~~~~~l~~~lGk~~v~v-~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv-~~~dID~~~-~~~G~p---~Gpf~~~D~~ 538 (725)
++++++.+.+|++.+||.||++ +|.||||+||++.++++||++++++|+ +++|||+++ .++|+| +|||+++|++
T Consensus 161 ~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~~~g~g~r~~~~Gpf~~~Dl~ 240 (321)
T PRK07066 161 APEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIRFGAGIRWSFMGTFLTYTLA 240 (321)
T ss_pred CHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHhhhc
Confidence 9999999999999999999999 799999999999999999999999996 999999999 799998 8999999999
Q ss_pred chHH-HHHHHHHHHhhCCCC---CCCcHHHHHHHH------cCCCccccCceeeeccC
Q 004891 539 GYGV-AAATSKEFDKAFPDR---SFQSPLVDLLLK------SGRNGKANGKGLYTYEK 586 (725)
Q Consensus 539 Gld~-~~~~~~~l~~~~~~~---~~~~~~l~~~v~------~g~~G~k~g~Gfy~y~~ 586 (725)
|+|. ..+.++++.+.+.+. ..++++..+|++ ++.+|.++.+++|.|.+
T Consensus 241 Gld~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd 298 (321)
T PRK07066 241 GGDAGMRHFMQQFGPALELPWTKLVAPELTDALIDRVVEGTAEQQGPRSIKALERYRD 298 (321)
T ss_pred ChHHHHHHHHHHhhhhhhHHHHhcCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9998 455556665554221 124556777777 68999999999999854
No 20
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=5.5e-50 Score=391.60 Aligned_cols=250 Identities=32% Similarity=0.522 Sum_probs=224.4
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccch
Q 004891 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84 (725)
Q Consensus 6 i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (725)
+.+...+++|+.||||||+ +|+|+..++.+|.+++..+++|+.+.++||||.|+.||+|+||+++......+-.. .
T Consensus 38 ~~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~---~ 114 (290)
T KOG1680|consen 38 IELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSD---G 114 (290)
T ss_pred eEEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhcccccccc---c
Confidence 3333337899999999996 79999999999999999999999999999999999999999999997643222111 1
Q ss_pred hHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHH
Q 004891 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML 164 (725)
Q Consensus 85 ~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l 164 (725)
.+.+.+ ..+.+.+||+||+|||+|+|||+||++.||+|||+++|+|++|+.++|++|.||||++|+|.||..+|++|++
T Consensus 115 ~~~~~~-~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~l 193 (290)
T KOG1680|consen 115 IFLRVW-DLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMIL 193 (290)
T ss_pred cccchh-hhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHH
Confidence 122334 4455799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhH
Q 004891 165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (725)
Q Consensus 165 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (725)
||++++|+||+++|||++|||.++++.+|.+++++|++.|+..++
T Consensus 194 tg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~~~~v~----------------------------------- 238 (290)
T KOG1680|consen 194 TGRRLGAQEAKKIGLVNKVVPSGDALGEAVKLAEQIAKNSPLVVR----------------------------------- 238 (290)
T ss_pred hcCcccHHHHHhCCceeEeecchhHHHHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence 999999999999999999999999999999999999999875433
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCC
Q 004891 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (725)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~ 295 (725)
+.|+.++.+.++++.+++..|...|...+.++|.+|++.+|.+||++++.
T Consensus 239 -~~K~svn~~~e~~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~~kr~~~~~ 288 (290)
T KOG1680|consen 239 -ADKESVNAAYETTLFEGLELERDLFGSTFATEDRLEGMTAFAEKRKPKFS 288 (290)
T ss_pred -HHHHHHHHHhhccHHHHHHhhhhhhhhhhhhHHHHHHHHHhcccCCcccc
Confidence 56788999999999999999999999999999999999999999998864
No 21
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.6e-49 Score=406.35 Aligned_cols=253 Identities=30% Similarity=0.471 Sum_probs=228.2
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 004891 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (725)
Q Consensus 1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (725)
|+++.+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++..... .
T Consensus 1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~---~ 76 (257)
T PRK05862 1 MAYETILVET-RGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSF---M 76 (257)
T ss_pred CCCceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccch---h
Confidence 7888899998 7899999999995 799999999999999999999999999999999999999999998764211 1
Q ss_pred cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (725)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (725)
..+.......+ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus 77 ~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 155 (257)
T PRK05862 77 DVYKGDYITNW-EKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKA 155 (257)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHH
Confidence 11112233445 56899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (725)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (725)
++|+++|++++|+||+++||||+|+|++++.+++.++++++++.++..+
T Consensus 156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~------------------------------- 204 (257)
T PRK05862 156 MDLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASFSLPAV------------------------------- 204 (257)
T ss_pred HHHHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhCCHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999998876433
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
..+|++++.....+++++++.|.+.+..++.|+|+++++++|++||+|..
T Consensus 205 -----~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~~kr~p~~ 254 (257)
T PRK05862 205 -----MMAKEAVNRAYETTLAEGLLFERRLFHSLFATEDQKEGMAAFVEKRKPVF 254 (257)
T ss_pred -----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCCC
Confidence 35678888888889999999999999999999999999999999998764
No 22
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.5e-49 Score=406.41 Aligned_cols=254 Identities=40% Similarity=0.654 Sum_probs=227.1
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccc
Q 004891 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (725)
Q Consensus 1 M~~~~i~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (725)
|+ ++.++. +++|++||||||+.|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++..........
T Consensus 1 ~~--~i~~~~-~~~v~~itl~rp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 77 (257)
T PRK07658 1 MK--FLSVRV-EDHVAVITLNHPPANALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQAT 77 (257)
T ss_pred Cc--eEEEEe-eCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHH
Confidence 55 688888 789999999999889999999999999999999999999999999999999999999885432211111
Q ss_pred ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHH
Q 004891 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (725)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 160 (725)
.+......++ +.|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|+
T Consensus 78 ~~~~~~~~~~-~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 156 (257)
T PRK07658 78 ELAQLGQVTF-ERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKAL 156 (257)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHH
Confidence 2223334556 678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCC
Q 004891 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (725)
Q Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (725)
+|+++|++++|+||+++||||+|||++++.+++.++++++++.+|.++
T Consensus 157 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~-------------------------------- 204 (257)
T PRK07658 157 EMMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKSPATT-------------------------------- 204 (257)
T ss_pred HHHHcCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCCHHHH--------------------------------
Confidence 999999999999999999999999999999999999999999886432
Q ss_pred ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
..+|++++.....+++++++.|.+.+..++.|+++++++++|++||+|++
T Consensus 205 ----~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~ 254 (257)
T PRK07658 205 ----RAVLELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKRKPSF 254 (257)
T ss_pred ----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence 35677888877788999999999999999999999999999999988774
No 23
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-48 Score=402.90 Aligned_cols=251 Identities=31% Similarity=0.478 Sum_probs=224.7
Q ss_pred cEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCcccccc
Q 004891 5 RVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSLMP 83 (725)
Q Consensus 5 ~i~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (725)
.+.++. +++|++||||||+.|++|.+|+.+|.++++.+++|+++|+|||||.| ++||+|+|++++..... .....+.
T Consensus 4 ~v~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~-~~~~~~~ 81 (258)
T PRK09076 4 ELDLEI-DGHVAILTLNNPPANTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDK-AVAREMA 81 (258)
T ss_pred EEEEEE-ECCEEEEEECCCCcCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcCh-hhHHHHH
Confidence 478888 78999999999988999999999999999999999999999999998 68999999998754211 1111122
Q ss_pred hhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHH
Q 004891 84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM 163 (725)
Q Consensus 84 ~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ 163 (725)
.....++ +.|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++|+
T Consensus 82 ~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ 160 (258)
T PRK09076 82 RRFGEAF-EALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMI 160 (258)
T ss_pred HHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHH
Confidence 2334556 668999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChh
Q 004891 164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ 243 (725)
Q Consensus 164 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 243 (725)
++|++++|+||+++||||+|||++++.+++.+++++++..++.+++
T Consensus 161 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~---------------------------------- 206 (258)
T PRK09076 161 LCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQSPSAVA---------------------------------- 206 (258)
T ss_pred HcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhCCHHHHH----------------------------------
Confidence 9999999999999999999999999999999999999998875433
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 244 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
.+|++++.....++++.++.|.+.+..++.++++++++++|++||+|++
T Consensus 207 --~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~ 255 (258)
T PRK09076 207 --ACKTLIQAARNGPRAAALALERELFVDLFDTEDQREGVNAFLEKRAPQW 255 (258)
T ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 4577787777788999999999999999999999999999999988775
No 24
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-48 Score=401.60 Aligned_cols=252 Identities=25% Similarity=0.410 Sum_probs=224.8
Q ss_pred CCCCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCc
Q 004891 1 MAAPRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD 78 (725)
Q Consensus 1 M~~~~i~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~ 78 (725)
|+..++.++..+++|++|||||| +.|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++..... ..
T Consensus 3 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~-~~ 81 (256)
T PRK06143 3 MLNAHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQ-AS 81 (256)
T ss_pred cccccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcCh-hh
Confidence 67788999975789999999999 47999999999999999999999999999999998 69999999998854221 11
Q ss_pred ccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHH
Q 004891 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (725)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (725)
...+......++ +.|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ |+++++++|++++|..+
T Consensus 82 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~ 159 (256)
T PRK06143 82 AEAFISRLRDLC-DAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWAR 159 (256)
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHH
Confidence 112223344556 6689999999999999999999999999999999999999999999998 88888999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 004891 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (725)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (725)
|++|+++|++++|+||+++||||+|||++++.+++.++++++++.|+.+++
T Consensus 160 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------- 210 (256)
T PRK06143 160 TRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCGPQALR----------------------------- 210 (256)
T ss_pred HHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998875433
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhh
Q 004891 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA 291 (725)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~ 291 (725)
.+|+.++.....+++++++.|.+.+..++.|+|+++++++|++||+
T Consensus 211 -------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~ 256 (256)
T PRK06143 211 -------QQKRLLREWEDMPLDVAIDDSVAEFGAAFLTGEPQRHMAAFLNRKR 256 (256)
T ss_pred -------HHHHHHHHHccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcC
Confidence 5577888777888999999999999999999999999999999875
No 25
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-48 Score=407.21 Aligned_cols=256 Identities=28% Similarity=0.427 Sum_probs=226.3
Q ss_pred CC-CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC--
Q 004891 1 MA-APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-- 76 (725)
Q Consensus 1 M~-~~~i~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~-- 76 (725)
|+ ++++.++. +++|++|||||| +.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++......
T Consensus 2 ~~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~ 80 (272)
T PRK06142 2 MTTYESFTVEL-ADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLG 80 (272)
T ss_pred CCCcceEEEEe-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhccccc
Confidence 55 57899998 889999999999 57999999999999999999999999999999999999999999988542110
Q ss_pred ----Cc----ccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhc
Q 004891 77 ----GD----VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ 148 (725)
Q Consensus 77 ----~~----~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~ 148 (725)
.. ...+.....+++ +.|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~ 159 (272)
T PRK06142 81 KDGLARPRTDLRREILRLQAAI-NAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQ 159 (272)
T ss_pred ccccccchHHHHHHHHHHHHHH-HHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHH
Confidence 00 001112234455 568999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCc-chHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHH
Q 004891 149 RLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVL 227 (725)
Q Consensus 149 ~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (725)
+|++++|..+|++|+++|++++|+||+++||||+|||+ +++.+++.++++++++.||.+++
T Consensus 160 ~l~~~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~~~a~~------------------ 221 (272)
T PRK06142 160 RLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKSPLAVR------------------ 221 (272)
T ss_pred HHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhCCHHHHH------------------
Confidence 99999999999999999999999999999999999985 88999999999999998875433
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 228 KLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 228 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
.+|+.++.....+++++++.|...+..++.|+|+++++.+|++||+|+.
T Consensus 222 ------------------~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr~p~~ 270 (272)
T PRK06142 222 ------------------GTKEVLDYMRDHRVADGLRYVATWNAAMLPSKDLTEAIAAHMEKRPPEF 270 (272)
T ss_pred ------------------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence 5677788777788999999999999999999999999999999998764
No 26
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=1.8e-48 Score=403.58 Aligned_cols=255 Identities=33% Similarity=0.545 Sum_probs=229.9
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCc
Q 004891 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD 78 (725)
Q Consensus 1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~ 78 (725)
|+++.+.++. +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++..... ..
T Consensus 1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~-~~ 78 (260)
T PRK05809 1 MELKNVILEK-EGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNE-EE 78 (260)
T ss_pred CCcceEEEEE-eCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccCh-HH
Confidence 8999999998 7899999999995 7999999999999999999999999999999999 89999999998854221 11
Q ss_pred ccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHH
Q 004891 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (725)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (725)
...+......++ +.|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus 79 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 157 (260)
T PRK05809 79 GRKFGLLGNKVF-RKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGK 157 (260)
T ss_pred HHHHHHHHHHHH-HHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence 111222334555 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 004891 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (725)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (725)
|++|+++|++++|+||+++||||+|+|++++.+++.+++++++..||.++
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~------------------------------ 207 (260)
T PRK05809 158 AKELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANAPIAV------------------------------ 207 (260)
T ss_pred HHHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCCHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999887533
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
..+|+.++.....+++++++.|.+.+..++.|+|+++++++|++||+|+.
T Consensus 208 ------~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~ 257 (260)
T PRK05809 208 ------KLCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKREKNF 257 (260)
T ss_pred ------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 35678888888889999999999999999999999999999999998764
No 27
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-48 Score=404.02 Aligned_cols=254 Identities=33% Similarity=0.541 Sum_probs=225.6
Q ss_pred CCCCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCC-C
Q 004891 1 MAAPRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGA-G 77 (725)
Q Consensus 1 M~~~~i~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~-~ 77 (725)
|+ +.|.++. +++|++|||||| +.|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++...... .
T Consensus 1 m~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~ 78 (260)
T PRK05980 1 MT-DTVLIEI-RDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGA 78 (260)
T ss_pred CC-ceEEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccc
Confidence 66 3688888 789999999999 47999999999999999999999999999999998 699999999987542111 1
Q ss_pred --cccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhC
Q 004891 78 --DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (725)
Q Consensus 78 --~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG 155 (725)
....+.....+++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|
T Consensus 79 ~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG 157 (260)
T PRK05980 79 DVALRDFVRRGQAMT-ARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAG 157 (260)
T ss_pred hhhHHHHHHHHHHHH-HHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcC
Confidence 1112222233455 5689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHH
Q 004891 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK 235 (725)
Q Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (725)
..+|++|+++|++++|+||+++||||+|||++++.+++.++++++++.+|.++
T Consensus 158 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~--------------------------- 210 (260)
T PRK05980 158 RKRALELLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRIIRHSPVAV--------------------------- 210 (260)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCCHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999999887433
Q ss_pred HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhc
Q 004891 236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 293 (725)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~ 293 (725)
..+|++++.....+++++++.|.+.+..++.|+|+++++++|++||+|.
T Consensus 211 ---------~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~ 259 (260)
T PRK05980 211 ---------AAILTAVTRGLNLSIAEGLLIESEQFARMAGSADLREGLAAWIERRRPA 259 (260)
T ss_pred ---------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCC
Confidence 2557788888788899999999999999999999999999999999875
No 28
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.5e-48 Score=400.24 Aligned_cols=252 Identities=29% Similarity=0.442 Sum_probs=224.0
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccccc
Q 004891 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (725)
Q Consensus 4 ~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (725)
+.|.++. +++|++||||||+ .|++|.+|+++|.++++.++ +++|+|||||.|++||+|+|++++..... ......
T Consensus 2 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~-~~~~~~ 77 (255)
T PRK08150 2 SLVSYEL-DGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDA-GEGMHH 77 (255)
T ss_pred ceEEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccc-hhHHHH
Confidence 4578888 7899999999994 79999999999999999997 78999999999999999999999864221 111122
Q ss_pred chhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHH
Q 004891 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (725)
Q Consensus 83 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l 162 (725)
.....+++ +.|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|
T Consensus 78 ~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l 156 (255)
T PRK08150 78 SRRWHRVF-DKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDM 156 (255)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHH
Confidence 23344556 66899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCCh
Q 004891 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (725)
Q Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (725)
+++|++++|+||+++||||+|||++++.+++.++|+++++.++..++
T Consensus 157 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------- 203 (255)
T PRK08150 157 MLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNAPLTNF--------------------------------- 203 (255)
T ss_pred HHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence 99999999999999999999999999999999999999998875332
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCC
Q 004891 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (725)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~ 296 (725)
.+|++++.....+++++++.|.+.+..++.|+|+++++.+|++||+|+.++
T Consensus 204 ---~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~~kr~p~~~~ 254 (255)
T PRK08150 204 ---AVLNALPRIADMSADDGLFVESLMAAVAQSAPEAKERLRAFLEKKAAKVKP 254 (255)
T ss_pred ---HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCC
Confidence 457788877778899999999999999999999999999999999887643
No 29
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.9e-48 Score=402.48 Aligned_cols=255 Identities=25% Similarity=0.378 Sum_probs=226.6
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC--C
Q 004891 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA--G 77 (725)
Q Consensus 1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~--~ 77 (725)
|+|+.+.++. +++|++||||||+ .|++|.+|+++|.+++++++ |+++++|||||.|++||+|+|++++...... .
T Consensus 1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 78 (262)
T PRK08140 1 MMYETILLAI-EAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMP 78 (262)
T ss_pred CCCceEEEEe-ECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccch
Confidence 8888899998 7899999999994 79999999999999999999 9999999999999999999999987532111 1
Q ss_pred ccc-ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCH
Q 004891 78 DVS-LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156 (725)
Q Consensus 78 ~~~-~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~ 156 (725)
... .+......++ +.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus 79 ~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~ 157 (262)
T PRK08140 79 DLGESIETFYNPLV-RRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGM 157 (262)
T ss_pred hhHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCH
Confidence 000 1111223345 66899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHH
Q 004891 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK 236 (725)
Q Consensus 157 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (725)
.++++|+++|++++|+||+++||||+|||++++.+++.++++++++.++..+
T Consensus 158 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~---------------------------- 209 (262)
T PRK08140 158 ARALGLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQPTRGL---------------------------- 209 (262)
T ss_pred HHHHHHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999999886433
Q ss_pred hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
..+|+.++.....+++++++.|...+..++.|+++++++++|++||+|.+
T Consensus 210 --------~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~~ 259 (262)
T PRK08140 210 --------ALIKQAMNASATNTLDAQLDLERDLQREAGRSADYAEGVSAFLEKRAPRF 259 (262)
T ss_pred --------HHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 25677888777888999999999999999999999999999999998764
No 30
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=4.2e-48 Score=401.05 Aligned_cols=255 Identities=23% Similarity=0.340 Sum_probs=225.3
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 004891 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (725)
Q Consensus 1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (725)
|..+.+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|++||+|||||.|++||+|+|++++.........
T Consensus 8 ~~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 86 (266)
T PRK08139 8 TEAPLLLRED-RDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYF 86 (266)
T ss_pred ccCCceEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHH
Confidence 3456788888 8899999999995 6999999999999999999999999999999999999999999987542211111
Q ss_pred cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (725)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (725)
..+.....+++ .+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ +++|+|++|..+|
T Consensus 87 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A 164 (266)
T PRK08139 87 RALFARCSRVM-QAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQA 164 (266)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHH
Confidence 12222234555 568999999999999999999999999999999999999999999999999765 5789999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (725)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (725)
++|+++|++++|+||+++||||+|+|++++.+++.++++++++.|+.+++
T Consensus 165 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 214 (266)
T PRK08139 165 MEMLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIAAKSPAAVR------------------------------ 214 (266)
T ss_pred HHHHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875433
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
.+|+.++.....+++++++.|.+.+..++.++|+++++++|++||++++
T Consensus 215 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 263 (266)
T PRK08139 215 ------IGKEAFYRQAEMPLADAYAYAGDVMAENMMAEDAEEGIDAFLEKRPPEW 263 (266)
T ss_pred ------HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 5678888888888999999999999999999999999999999988775
No 31
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=5.8e-48 Score=398.10 Aligned_cols=251 Identities=31% Similarity=0.461 Sum_probs=225.3
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 004891 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (725)
Q Consensus 1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (725)
|+ .|.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++..... .
T Consensus 1 ~~--~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~---~ 74 (255)
T PRK09674 1 MS--ELLVSR-QQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDL---A 74 (255)
T ss_pred Cc--eEEEEe-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccch---h
Confidence 55 478888 7899999999995 799999999999999999999999999999999999999999998754211 1
Q ss_pred cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (725)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (725)
..+......++ +.+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus 75 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a 153 (255)
T PRK09674 75 ATLNDPRPQLW-QRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLA 153 (255)
T ss_pred hhHHHHHHHHH-HHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHH
Confidence 11122233455 66899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (725)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (725)
++|+++|++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 154 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~------------------------------ 203 (255)
T PRK09674 154 SQMVLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARHSPLALR------------------------------ 203 (255)
T ss_pred HHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875332
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
.+|+.++.....++++.++.|.+.+..++.++++++++++|++||+|.+
T Consensus 204 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~i~af~~kr~p~~ 252 (255)
T PRK09674 204 ------AAKQALRQSQEVDLQAGLAQERQLFTLLAATEDRHEGISAFLEKRTPDF 252 (255)
T ss_pred ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence 5677888888888999999999999999999999999999999988764
No 32
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.7e-48 Score=399.72 Aligned_cols=255 Identities=25% Similarity=0.364 Sum_probs=224.7
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC--
Q 004891 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-- 77 (725)
Q Consensus 1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~-- 77 (725)
|+|+++.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.......
T Consensus 1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 79 (262)
T PRK05995 1 MMYETLEIEQ-RGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDD 79 (262)
T ss_pred CCCceEEEEe-eCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCch
Confidence 8899999998 7899999999995 79999999999999999999999999999999999999999999875421111
Q ss_pred cccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHH
Q 004891 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (725)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~ 157 (725)
+.........+++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++ +|++++|..
T Consensus 80 ~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vg~~ 157 (262)
T PRK05995 80 ENRADARRLADML-RAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISP-YVIRAMGER 157 (262)
T ss_pred hhhhHHHHHHHHH-HHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHH-HHHHHhCHH
Confidence 1111112234555 66899999999999999999999999999999999999999999999999988765 589999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 004891 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (725)
Q Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (725)
+|++|+++|++++|+||+++||||+|||++++.+++.++++++++.|+.+++
T Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------- 209 (262)
T PRK05995 158 AARRYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVANSPQAVR---------------------------- 209 (262)
T ss_pred HHHHHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999998875332
Q ss_pred CCCChhHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 238 APNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~~-l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
.+|+.++.....++++. ++.|...+..++.|+|+++++++|++||+|..
T Consensus 210 --------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~~kr~p~~ 259 (262)
T PRK05995 210 --------AGKRLVRDVAGRPIDAALIADTASRIALIRATEEAREGVAAFLEKRKPAW 259 (262)
T ss_pred --------HHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 45777877777788888 88999999999999999999999999998774
No 33
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.2e-48 Score=398.71 Aligned_cols=251 Identities=24% Similarity=0.344 Sum_probs=220.7
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccch
Q 004891 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84 (725)
Q Consensus 6 i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (725)
|.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++....... ...+..
T Consensus 1 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~-~~~~~~ 78 (255)
T PRK06563 1 VSRER-RGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAG-GFPFPE 78 (255)
T ss_pred CeEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccc-hhhhhh
Confidence 35677 7899999999995 79999999999999999999999999999999999999999999885421111 111111
Q ss_pred hHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHH
Q 004891 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML 164 (725)
Q Consensus 85 ~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l 164 (725)
...+.+...+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|++
T Consensus 79 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l 158 (255)
T PRK06563 79 GGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLL 158 (255)
T ss_pred hhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHH
Confidence 12233323478999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhH
Q 004891 165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (725)
Q Consensus 165 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (725)
+|++++|+||+++||||+|||++++.+++.++++++++.++.+++
T Consensus 159 tg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------------- 203 (255)
T PRK06563 159 TGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIARAAPLGVQ----------------------------------- 203 (255)
T ss_pred cCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHhcCHHHHH-----------------------------------
Confidence 999999999999999999999999999999999999988875332
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
.+|+.++.....+++++++.|...+..++.++|+++++++|++||+|..
T Consensus 204 -~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 252 (255)
T PRK06563 204 -ATLASARAAVREGEAAAAAQLPPELRPLFTSEDAKEGVQAFLERRPARF 252 (255)
T ss_pred -HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 4567777777788999999999999999999999999999999998764
No 34
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.7e-48 Score=400.64 Aligned_cols=256 Identities=24% Similarity=0.330 Sum_probs=227.5
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCC-CceEEEEEcCCCCCcCCCCchhhhhccCCC-
Q 004891 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRD-DVKAIVLTGNGGRFSGGFDINVFQKVHGAG- 77 (725)
Q Consensus 1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~-~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~- 77 (725)
|.|+.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+ ++|+|||||.|++||+|+|++++.......
T Consensus 1 ~~~~~v~~~~-~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~ 79 (266)
T PRK05981 1 MQFKKVTLDF-DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESD 79 (266)
T ss_pred CCcceEEEEe-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhccccccc
Confidence 8999999999 7899999999995 79999999999999999999876 499999999999999999999975422110
Q ss_pred ---c-ccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhh
Q 004891 78 ---D-VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL 153 (725)
Q Consensus 78 ---~-~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~ 153 (725)
. ...+......++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~ 158 (266)
T PRK05981 80 SGGDAGAALETAYHPFL-RRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRL 158 (266)
T ss_pred ccchhHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHH
Confidence 0 011122234555 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred hCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHH
Q 004891 154 VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQ 233 (725)
Q Consensus 154 vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (725)
+|+.++++|+++|++++|+||+++||||+|+|++++.+++.++++++++.|+.+++
T Consensus 159 vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~------------------------ 214 (266)
T PRK05981 159 VGKARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELANGPTVALG------------------------ 214 (266)
T ss_pred hHHHHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcCCHHHHH------------------------
Confidence 99999999999999999999999999999999999999999999999988764332
Q ss_pred HHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 234 AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 234 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
.+|++++.....++.++++.|...+..++.|+|+++++.+|++||+++.
T Consensus 215 ------------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~ 263 (266)
T PRK05981 215 ------------LIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKRPAQF 263 (266)
T ss_pred ------------HHHHHHHHhhhcCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 4577787777788999999999999999999999999999999998774
No 35
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.3e-48 Score=400.35 Aligned_cols=255 Identities=27% Similarity=0.356 Sum_probs=225.4
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCH-HHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC-
Q 004891 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAI-PIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG- 77 (725)
Q Consensus 1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~-~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~- 77 (725)
|+ +.+.++. +++|++||||||+ .|++|. +|+++|.+++++++.|+++|+|||+|.|++||+|+|++++.......
T Consensus 1 m~-~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (266)
T PRK09245 1 MT-DFLLVER-DGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFG 78 (266)
T ss_pred CC-CceEEEE-ECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhcccccc
Confidence 66 4588888 7899999999995 799995 99999999999999999999999999999999999999985421110
Q ss_pred -cc----cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhh
Q 004891 78 -DV----SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPR 152 (725)
Q Consensus 78 -~~----~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r 152 (725)
.. ..+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++
T Consensus 79 ~~~~~~~~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~ 157 (266)
T PRK09245 79 GSPADIRQGYRHGIQRIP-LALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPR 157 (266)
T ss_pred ccchhHHHHHHHHHHHHH-HHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHH
Confidence 00 01111223445 5689999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHH
Q 004891 153 LVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARL 232 (725)
Q Consensus 153 ~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (725)
++|..+|++|+++|++++|+||+++||||+|||++++.+++.++++++++.|+.+++
T Consensus 158 ~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~----------------------- 214 (266)
T PRK09245 158 IIGMARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIAANPPHALR----------------------- 214 (266)
T ss_pred HhhHHHHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH-----------------------
Confidence 999999999999999999999999999999999999999999999999998875433
Q ss_pred HHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 233 QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 233 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
.+|++++.....++++.++.|.+.+..++.|+|+++++++|++||+|.+
T Consensus 215 -------------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 263 (266)
T PRK09245 215 -------------LTKRLLREGQHASLDTLLELSAAYQALAHHTADHREAVDAFLEKRPPVF 263 (266)
T ss_pred -------------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHHcCCCCCC
Confidence 5677888777888999999999999999999999999999999998764
No 36
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9e-48 Score=398.07 Aligned_cols=255 Identities=30% Similarity=0.488 Sum_probs=227.2
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCc
Q 004891 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD 78 (725)
Q Consensus 1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~ 78 (725)
|+ +++.+++.+++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++..... ..
T Consensus 1 ~~-~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~-~~ 78 (260)
T PRK07657 1 ML-QNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNE-EQ 78 (260)
T ss_pred CC-ceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCCh-hh
Confidence 77 578888646899999999995 7999999999999999999999999999999999 49999999999754211 11
Q ss_pred ccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHH
Q 004891 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (725)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (725)
...+......++ +.|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus 79 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~ 157 (260)
T PRK07657 79 VRHAVSLIRTTM-EMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGR 157 (260)
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHH
Confidence 122223334556 6689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 004891 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (725)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (725)
+++|+++|++++|+||+++||||+|||++++++++.+++++++..++.++
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~------------------------------ 207 (260)
T PRK07657 158 AKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNGPIAV------------------------------ 207 (260)
T ss_pred HHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999887533
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
..+|+.++.....+++++++.|.+.+..++.|+++++++++|+++|+++.
T Consensus 208 ------~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r~~~~ 257 (260)
T PRK07657 208 ------RQAKEAISNGIQVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRKPMY 257 (260)
T ss_pred ------HHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence 25677888877888999999999999999999999999999999988774
No 37
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.4e-48 Score=396.99 Aligned_cols=253 Identities=32% Similarity=0.472 Sum_probs=224.9
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC-Ccc
Q 004891 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-GDV 79 (725)
Q Consensus 1 M~~~~i~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~-~~~ 79 (725)
|+|+.+.++. +++|++||||||+.|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++...... ...
T Consensus 1 ~~~~~i~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~ 79 (257)
T PRK06495 1 MMMSQLKLEV-SDHVAVVTLDNPPVNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDL 79 (257)
T ss_pred CCcceEEEEe-eCCEEEEEECCCccccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhH
Confidence 7889999998 78999999999988999999999999999999999999999999999999999999987542111 111
Q ss_pred cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (725)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (725)
..+.....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++ |+++++++++|..+|
T Consensus 80 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a 155 (257)
T PRK06495 80 RAHNRRTRECF-HAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLT 155 (257)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHH
Confidence 11122234555 66899999999999999999999999999999999999999999999996 456789999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (725)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (725)
++|+++|++++|+||+++||||+|||++++.+++.++++++++.||..++
T Consensus 156 ~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~------------------------------ 205 (257)
T PRK06495 156 RRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASKSPLATR------------------------------ 205 (257)
T ss_pred HHHHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875433
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
.+|+.++.....+++++++.|...+..++.|+|+++++++|++||+|.+
T Consensus 206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr~p~~ 254 (257)
T PRK06495 206 ------LAKDALNTIENMSLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKRPPVF 254 (257)
T ss_pred ------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhccCCCCC
Confidence 4567777777888999999999999999999999999999999998874
No 38
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-47 Score=396.53 Aligned_cols=251 Identities=32% Similarity=0.464 Sum_probs=224.9
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccccc
Q 004891 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (725)
Q Consensus 4 ~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (725)
+++.++.++++|++||||||+ .|++|.+|+.+|.++++.+++|+++|+|||||.|++||+|+|++++..... ...+
T Consensus 7 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~---~~~~ 83 (261)
T PRK08138 7 DVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGA---IEMY 83 (261)
T ss_pred CCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccch---hHHH
Confidence 567888756889999999995 799999999999999999999999999999999999999999998764211 1112
Q ss_pred chhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHH
Q 004891 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (725)
Q Consensus 83 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l 162 (725)
....++++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++|
T Consensus 84 ~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l 162 (261)
T PRK08138 84 LRHTERYW-EAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRM 162 (261)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHH
Confidence 22334555 66899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCCh
Q 004891 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (725)
Q Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (725)
+++|++++|+||+++||||+|||++++.+++.++++++++.++..
T Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a----------------------------------- 207 (261)
T PRK08138 163 ALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIARMPPLA----------------------------------- 207 (261)
T ss_pred HHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHhCCHHH-----------------------------------
Confidence 999999999999999999999999999999999999999877642
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
+..+|++++.....+++++++.|.+.+..++.|+++++++++|++||++++
T Consensus 208 -~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~~kr~~~~ 258 (261)
T PRK08138 208 -LAQIKEVVLAGADAPLDAALALERKAFQLLFDSEDQKEGMDAFLEKRKPAY 258 (261)
T ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 235677888888888999999999999999999999999999999998764
No 39
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.1e-47 Score=397.56 Aligned_cols=256 Identities=20% Similarity=0.262 Sum_probs=221.4
Q ss_pred CCCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccc
Q 004891 2 AAPRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (725)
Q Consensus 2 ~~~~i~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (725)
+|+++.++.++++|++|||||| +.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..........
T Consensus 3 ~~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 82 (265)
T PRK05674 3 DFQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNT 82 (265)
T ss_pred CcceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchh
Confidence 3899999984478999999999 579999999999999999999999999999999999999999999875421111001
Q ss_pred c--cchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHH
Q 004891 81 L--MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (725)
Q Consensus 81 ~--~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (725)
. ......+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++ ++++++|..+
T Consensus 83 ~~~~~~~~~~~~-~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~~~ 160 (265)
T PRK05674 83 NLDDARELAELM-YNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGERA 160 (265)
T ss_pred hhHHHHHHHHHH-HHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCHHH
Confidence 1 112233555 56899999999999999999999999999999999999999999999999987765 5999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 004891 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (725)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (725)
|++|++||++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 161 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~----------------------------- 211 (265)
T PRK05674 161 ARRYALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLLLNSPQALR----------------------------- 211 (265)
T ss_pred HHHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998875433
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHH-HHHHHHHHhCCHhHHHHHHHHHhhhhhcCC
Q 004891 239 PNMPQHQACLDVIEEGIVHGGYSGVLK-EAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (725)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~-E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~ 295 (725)
.+|+.++.....++++++.. +.+.+..++.|+++++++++|++||+|.+.
T Consensus 212 -------~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~~kr~p~~~ 262 (265)
T PRK05674 212 -------ASKDLLREVGDGELSPALRRYCENAIARIRVSAEGQEGLRAFLEKRTPAWQ 262 (265)
T ss_pred -------HHHHHHHHhhccChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCCCCCC
Confidence 45777888777888888765 456788899999999999999999987753
No 40
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-47 Score=396.92 Aligned_cols=256 Identities=23% Similarity=0.310 Sum_probs=222.4
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc-
Q 004891 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD- 78 (725)
Q Consensus 1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~- 78 (725)
|+|+.+.++.++++|++||||||+ .|++|.+|+++|.++++.++.|+++++|||||.|++||+|+|++++........
T Consensus 1 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 80 (262)
T PRK07468 1 MMFETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRA 80 (262)
T ss_pred CCcceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchh
Confidence 678889998844689999999994 899999999999999999999999999999999999999999998753211111
Q ss_pred -ccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHH
Q 004891 79 -VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (725)
Q Consensus 79 -~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~ 157 (725)
..........++ +.|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++ +++|..
T Consensus 81 ~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~-~~vG~~ 158 (262)
T PRK07468 81 TRIEEARRLAMML-KALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVV-ARMGEA 158 (262)
T ss_pred hHHHHHHHHHHHH-HHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHH-hhccHH
Confidence 111112233455 67999999999999999999999999999999999999999999999999999998855 559999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 004891 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (725)
Q Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (725)
++++|+++|++++|+||+++||||+|+|.+++.+++.++++++++.+|.+++
T Consensus 159 ~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~---------------------------- 210 (262)
T PRK07468 159 NARRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCAPGAVA---------------------------- 210 (262)
T ss_pred HHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999998875433
Q ss_pred CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
.+|++++.......+++++.|...+..++.|+|+++++++|++||++.+
T Consensus 211 --------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~ 259 (262)
T PRK07468 211 --------AAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKRAPAW 259 (262)
T ss_pred --------HHHHHHHhhhccChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence 4566777665566788999999999999999999999999999998875
No 41
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=9.3e-48 Score=395.32 Aligned_cols=245 Identities=30% Similarity=0.475 Sum_probs=219.6
Q ss_pred cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC-CCCCcCCCCchhhhhccCCCcccccchhHHHH
Q 004891 12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL 89 (725)
Q Consensus 12 ~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (725)
+++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||. |++||+|+|++++..... .....+......+
T Consensus 2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~-~~~~~~~~~~~~~ 80 (251)
T PLN02600 2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSP-SEVQKFVNSLRST 80 (251)
T ss_pred CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccCh-HHHHHHHHHHHHH
Confidence 5789999999995 799999999999999999999999999999998 589999999998854211 1111222333445
Q ss_pred HHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCC
Q 004891 90 VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169 (725)
Q Consensus 90 ~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~ 169 (725)
+ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..++++|+++|+++
T Consensus 81 ~-~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~ 159 (251)
T PLN02600 81 F-SSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRI 159 (251)
T ss_pred H-HHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCcc
Confidence 5 568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 004891 170 TSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLD 249 (725)
Q Consensus 170 ~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 249 (725)
+|+||+++||||+|||++++.+++.++|+++++.|+.+++ .+|+
T Consensus 160 ~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~p~a~~------------------------------------~~K~ 203 (251)
T PLN02600 160 GAREAASMGLVNYCVPAGEAYEKALELAQEINQKGPLAIK------------------------------------MAKK 203 (251)
T ss_pred CHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------------HHHH
Confidence 9999999999999999999999999999999998875433 5677
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 250 VIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 250 ~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
+++.....+++++++.|.+.+..++.|+|+++++++|++||+|..
T Consensus 204 ~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~ 248 (251)
T PLN02600 204 AINEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAFAEKRKPVY 248 (251)
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCC
Confidence 888877888999999999999999999999999999999998764
No 42
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=2.5e-47 Score=394.75 Aligned_cols=253 Identities=28% Similarity=0.467 Sum_probs=224.4
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccc
Q 004891 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (725)
Q Consensus 3 ~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (725)
.+.+.++..+++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus 8 ~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~---- 83 (265)
T PLN02888 8 ENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGD---- 83 (265)
T ss_pred CCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccch----
Confidence 4567777546899999999995 79999999999999999999999999999999999999999999875321111
Q ss_pred cchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHH
Q 004891 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (725)
Q Consensus 82 ~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~ 161 (725)
......+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++
T Consensus 84 ~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~ 162 (265)
T PLN02888 84 VKDVETDPV-AQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRARE 162 (265)
T ss_pred hhHHHHHHH-HHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHH
Confidence 111223455 5688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCC
Q 004891 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241 (725)
Q Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (725)
|+++|++++|+||+++||||+|||++++.+++.++++++++.++.+++
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------- 210 (265)
T PLN02888 163 VSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNNQGMVL-------------------------------- 210 (265)
T ss_pred HHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence 999999999999999999999999999999999999999998875433
Q ss_pred hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh--CCHhHHHHHHHHHhhhhhcCCC
Q 004891 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELV--MLDTSRGLVHVFFAQRATSKVP 296 (725)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~--~s~~~~~~i~aF~~~r~~~~~~ 296 (725)
.+|+.++.....+++++++.|.+.+..++ .++++++++++|++||+++|.|
T Consensus 211 ----~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~ekr~~~~~~ 263 (265)
T PLN02888 211 ----RYKSVINDGLKLDLGHALQLEKERAHDYYNGMTKEQFQKMQEFIAGRSSKKPS 263 (265)
T ss_pred ----HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCC
Confidence 56778888778889999999998888886 5999999999999999998866
No 43
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-47 Score=396.20 Aligned_cols=252 Identities=31% Similarity=0.433 Sum_probs=223.1
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCc
Q 004891 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD 78 (725)
Q Consensus 1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~ 78 (725)
|+++.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++.......
T Consensus 1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~- 78 (259)
T PRK06494 1 MALPFSTVER-KGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRG- 78 (259)
T ss_pred CCCceeEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcch-
Confidence 8889999998 7899999999996 6999999999999999999999999999999998 6999999999875422111
Q ss_pred ccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHH
Q 004891 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (725)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (725)
. .......+. . +.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus 79 ~--~~~~~~~~~-~-~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~ 154 (259)
T PRK06494 79 W--PESGFGGLT-S-RFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKR 154 (259)
T ss_pred h--hhHHHHHHH-H-HhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHH
Confidence 0 011122222 3 56899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 004891 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (725)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (725)
|++|+++|++++|+||+++||||+|||++++.+++.++++++++.|+.+++
T Consensus 155 a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------- 205 (259)
T PRK06494 155 AMGMILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILACSPLSIR----------------------------- 205 (259)
T ss_pred HHHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998875433
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHH--HHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 239 PNMPQHQACLDVIEEGIVHGGYSGVLKE--AKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E--~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
.+|+.++.....+++++++.| ...+..++.|+|+++++++|++||++++
T Consensus 206 -------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr~p~~ 256 (259)
T PRK06494 206 -------ASKQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKRPPRW 256 (259)
T ss_pred -------HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCC
Confidence 457788877788899999999 5578899999999999999999987764
No 44
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-47 Score=399.24 Aligned_cols=256 Identities=27% Similarity=0.372 Sum_probs=226.6
Q ss_pred CCCCcEEEEEecC-cEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc
Q 004891 1 MAAPRVTMEVGND-GVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (725)
Q Consensus 1 M~~~~i~~~~~~~-~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (725)
|+|+.+.+++ ++ +|++|||||| +.|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++........
T Consensus 2 ~~~~~i~~~~-~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~ 80 (272)
T PRK06210 2 MAYDAVLYEV-ADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDG 80 (272)
T ss_pred CCcceEEEEE-CCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccc
Confidence 8899999998 67 9999999999 4799999999999999999999999999999999999999999998764221110
Q ss_pred c-----cccch----hHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhch
Q 004891 79 V-----SLMPD----VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQR 149 (725)
Q Consensus 79 ~-----~~~~~----~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~ 149 (725)
. ..+.. ..++.+ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~ 159 (272)
T PRK06210 81 RRDTDVRPFVGNRRPDYQTRY-HFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWI 159 (272)
T ss_pred cccccchhhhhhhhhhHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhh
Confidence 0 01100 123344 5688999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhc-CchhhhhhhccCCCCChHHHHHHHH
Q 004891 150 LPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSEAREVLK 228 (725)
Q Consensus 150 l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (725)
|++++|+.++++|+++|++++|+||+++||||+|||++++.+++.++++++++. +|.++
T Consensus 160 l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~p~a~-------------------- 219 (272)
T PRK06210 160 LPRLVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSPASM-------------------- 219 (272)
T ss_pred hHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCCHHHH--------------------
Confidence 999999999999999999999999999999999999999999999999999985 65432
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 229 LARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 229 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
..+|+.++.....+++++++.|...+..++.++++++++++|++||+|.+
T Consensus 220 ----------------~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~ 269 (272)
T PRK06210 220 ----------------AVIKRQLYEDAFQTLAEATARANREMHESLQRPDFIEGVASFLEKRPPRF 269 (272)
T ss_pred ----------------HHHHHHHHhcccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Confidence 25677888877888999999999999999999999999999999998774
No 45
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=1.4e-47 Score=395.68 Aligned_cols=250 Identities=26% Similarity=0.384 Sum_probs=220.9
Q ss_pred EEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC-Ccc-ccc
Q 004891 6 VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-GDV-SLM 82 (725)
Q Consensus 6 i~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~-~~~-~~~ 82 (725)
|.++. +++|++|||||| +.|++|.+|+.+|.+++++++.|+ +|+|||||.|++||+|+|++++...... .+. ..+
T Consensus 1 ~~~e~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T TIGR02280 1 ILSAL-EAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTI 78 (256)
T ss_pred CeEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHH
Confidence 35677 789999999999 579999999999999999999998 9999999999999999999998642111 111 111
Q ss_pred chhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHH
Q 004891 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (725)
Q Consensus 83 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l 162 (725)
......++ +.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..++++|
T Consensus 79 ~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l 157 (256)
T TIGR02280 79 ETFYNPLV-RRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGL 157 (256)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHH
Confidence 11122344 66899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCCh
Q 004891 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (725)
Q Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (725)
+++|++++|+||+++||||+|+|++++.+++.++++++++.|+..+
T Consensus 158 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~---------------------------------- 203 (256)
T TIGR02280 158 AMLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQPTRGL---------------------------------- 203 (256)
T ss_pred HHcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHH----------------------------------
Confidence 9999999999999999999999999999999999999999887533
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
..+|+.++.....+++++++.|.+.+..++.|+|+++++++|++||+|.+
T Consensus 204 --~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 253 (256)
T TIGR02280 204 --ALTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKRNPQF 253 (256)
T ss_pred --HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCCCCCC
Confidence 25677888877888999999999999999999999999999999998875
No 46
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.9e-47 Score=395.97 Aligned_cols=255 Identities=24% Similarity=0.311 Sum_probs=226.9
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccC-C-C
Q 004891 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG-A-G 77 (725)
Q Consensus 1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~-~-~ 77 (725)
|| .++.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||+|.|++||+|+|++++..... . .
T Consensus 1 ~~-~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~ 78 (260)
T PRK07511 1 MS-AELLSRR-EGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPS 78 (260)
T ss_pred CC-CeeEEEe-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccch
Confidence 77 3577888 7899999999995 799999999999999999999999999999999999999999998864211 1 1
Q ss_pred cccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHH
Q 004891 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (725)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~ 157 (725)
....+.....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 79 ~~~~~~~~~~~~~-~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~ 157 (260)
T PRK07511 79 VQAASIDGLHDWI-RAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQ 157 (260)
T ss_pred hHHHHHHHHHHHH-HHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHH
Confidence 1112223344556 668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 004891 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (725)
Q Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (725)
++++|+++|++++|+||+++||||+|||++++.+++.++++++++.++..+
T Consensus 158 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~~~----------------------------- 208 (260)
T PRK07511 158 LATELLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAAGSPNAL----------------------------- 208 (260)
T ss_pred HHHHHHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998876432
Q ss_pred CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
..+|+.++.....+++++++.|.+.+..++.|+++++++++|+++|++.+
T Consensus 209 -------~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r~~~~ 258 (260)
T PRK07511 209 -------ARIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAAFLEKRAPDY 258 (260)
T ss_pred -------HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhccCCCCC
Confidence 25677888888888999999999999999999999999999999998764
No 47
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.1e-47 Score=396.06 Aligned_cols=253 Identities=25% Similarity=0.356 Sum_probs=223.1
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccc
Q 004891 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (725)
Q Consensus 3 ~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (725)
++.+.++. +++|++||||||+ +|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++...........
T Consensus 4 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 82 (263)
T PRK07799 4 GPHALVEQ-RGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKD 82 (263)
T ss_pred CceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhh
Confidence 46788888 7899999999995 799999999999999999999999999999999999999999999864321111110
Q ss_pred --c-chhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHH
Q 004891 82 --M-PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (725)
Q Consensus 82 --~-~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (725)
+ ......++ + +..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus 83 ~~~~~~~~~~~~-~-~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 160 (263)
T PRK07799 83 GSYDPSRIDALL-K-GRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTV 160 (263)
T ss_pred hhhhhhHHHHHH-H-HhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHH
Confidence 0 01111222 3 78899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 004891 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (725)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (725)
|++|+++|++++|+||+++||||+|||++++.+++.++++++++.|+.+++
T Consensus 161 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~a~~----------------------------- 211 (263)
T PRK07799 161 ACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINANGPLAVQ----------------------------- 211 (263)
T ss_pred HHHHHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHHhcChHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998875332
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
.+|+.++.....+++++++.|.+.+..++.++++++++++|++||+|++
T Consensus 212 -------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~ 260 (263)
T PRK07799 212 -------AILRTIRETEGMHENEAFKIDTKIGIPVFLSEDAKEGPRAFAEKRAPNF 260 (263)
T ss_pred -------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCC
Confidence 5677888877888999999999999999999999999999999988764
No 48
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=2.2e-47 Score=395.15 Aligned_cols=253 Identities=24% Similarity=0.344 Sum_probs=222.9
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCcc
Q 004891 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDV 79 (725)
Q Consensus 1 M~~~~i~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~ 79 (725)
|+. .+.++. +++|++||||||+.|++|.+|+++|.+++++++.|++||+|||||.| ++||+|+|++++.......
T Consensus 1 ~~~-~i~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~-- 76 (261)
T PRK03580 1 MSE-SLHTTR-NGSILEITLDRPKANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPD-- 76 (261)
T ss_pred CCc-eEEEEE-ECCEEEEEECCccccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcch--
Confidence 663 588888 78999999999988999999999999999999999999999999998 7999999999876422111
Q ss_pred cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (725)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (725)
..+.......+ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus 77 ~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a 155 (261)
T PRK03580 77 ADFGPGGFAGL-TEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIA 155 (261)
T ss_pred hhhhhhhhHHH-HHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHH
Confidence 11111122344 56889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (725)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (725)
++++++|++++|+||+++||||+|||++++.+++.++++++++.++..++
T Consensus 156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 205 (261)
T PRK03580 156 NEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSAPLAIA------------------------------ 205 (261)
T ss_pred HHHHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875433
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHH----HHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAK----VFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~----~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
.+|+.++.....+++++++.|.. .+..++.|+|+++++++|++||++.+
T Consensus 206 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr~~~~ 258 (261)
T PRK03580 206 ------ALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKRDPVW 258 (261)
T ss_pred ------HHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence 45777877777888999988874 78889999999999999999998764
No 49
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.2e-47 Score=398.38 Aligned_cols=252 Identities=30% Similarity=0.426 Sum_probs=224.1
Q ss_pred cEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC---Cccc
Q 004891 5 RVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA---GDVS 80 (725)
Q Consensus 5 ~i~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~---~~~~ 80 (725)
.+.++. +++|++|||||| +.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++...... ....
T Consensus 18 ~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~ 96 (277)
T PRK08258 18 HFLWEV-DDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELL 96 (277)
T ss_pred ceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHH
Confidence 678888 789999999999 57999999999999999999999999999999999999999999987432111 1111
Q ss_pred ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCC-CchhhchHhhhhCHHHH
Q 004891 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIP-GFGGTQRLPRLVGLSKA 159 (725)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p-~~g~~~~l~r~vG~~~a 159 (725)
.+.....+++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|++++|..+|
T Consensus 97 ~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a 175 (277)
T PRK08258 97 AFTRMTGDLV-KAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRA 175 (277)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHH
Confidence 1222233555 678999999999999999999999999999999999999999999999995 78899999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (725)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (725)
++|+++|++++|+||+++||||+|||++++.+++.+++++++..|+.+++
T Consensus 176 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 225 (277)
T PRK08258 176 SELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLAAGPTFAHG------------------------------ 225 (277)
T ss_pred HHHHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875433
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
.+|+.++.....+++++++.|.+.+..++.|+|+++++++|++||++++
T Consensus 226 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~ 274 (277)
T PRK08258 226 ------MTKTMLHQEWDMGLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKRKPVF 274 (277)
T ss_pred ------HHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 4577888877888999999999999999999999999999999998875
No 50
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.8e-47 Score=392.80 Aligned_cols=250 Identities=28% Similarity=0.410 Sum_probs=221.1
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 004891 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (725)
Q Consensus 1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (725)
|+ +.+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.......
T Consensus 1 ~~-~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-- 76 (254)
T PRK08252 1 MS-DEVLVER-RGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPS-- 76 (254)
T ss_pred CC-ceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchh--
Confidence 55 4688888 7899999999995 79999999999999999999999999999999999999999999886421111
Q ss_pred cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (725)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (725)
........++ ...+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|
T Consensus 77 -~~~~~~~~~~---~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a 152 (254)
T PRK08252 77 -IPGRGFGGLT---ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIA 152 (254)
T ss_pred -hhHHHHHHHH---HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHH
Confidence 1111111222 247999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (725)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (725)
++|+++|++++|+||+++||||+|||++++.+++.++++++++.|+.+++
T Consensus 153 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------ 202 (254)
T PRK08252 153 MELALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIAANGPLAVA------------------------------ 202 (254)
T ss_pred HHHHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875433
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
.+|++++.....++++.++.|...+..++.++|+++++.+|++||+|++
T Consensus 203 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~ 251 (254)
T PRK08252 203 ------ASKRIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAFAEKRAPVW 251 (254)
T ss_pred ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 4577787777778999999999999999999999999999999887764
No 51
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-47 Score=396.50 Aligned_cols=254 Identities=25% Similarity=0.412 Sum_probs=225.4
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCc-c
Q 004891 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD-V 79 (725)
Q Consensus 3 ~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~-~ 79 (725)
.+.|.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++++|||||.| ++||+|+|++++.......+ .
T Consensus 10 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 88 (269)
T PRK06127 10 TGKLLAEK-TGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAV 88 (269)
T ss_pred CCceEEEE-ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHH
Confidence 45688888 7899999999995 7999999999999999999999999999999998 79999999998854211111 1
Q ss_pred cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (725)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (725)
..+......++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus 89 ~~~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 167 (269)
T PRK06127 89 AAYEQAVEAAQ-AALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAA 167 (269)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHH
Confidence 12222333455 66899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (725)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (725)
++|+++|++++|+||+++||||+|||++++.+++.++|++++..++..++
T Consensus 168 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------ 217 (269)
T PRK06127 168 KDLFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIAGNAPLTLR------------------------------ 217 (269)
T ss_pred HHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998765332
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
.+|+.++.....++++.++.|...+..++.|+|+++++++|++||+|.+
T Consensus 218 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~ 266 (269)
T PRK06127 218 ------AAKRAIAELLKDEPERDMAACQALVAACFDSEDYREGRAAFMEKRKPVF 266 (269)
T ss_pred ------HHHHHHHHhccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCC
Confidence 4677787777788999999999999999999999999999999998774
No 52
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-47 Score=392.83 Aligned_cols=247 Identities=26% Similarity=0.351 Sum_probs=216.8
Q ss_pred EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchh
Q 004891 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (725)
Q Consensus 6 i~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (725)
|+++..+++|++||||||+.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...............
T Consensus 3 ~~~~~~~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 82 (249)
T PRK07938 3 ITSTTPEPGIAEVTVDYPPVNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRG 82 (249)
T ss_pred eeecccCCCEEEEEECCCCcccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHH
Confidence 66665578999999999988999999999999999999999999999999999999999999987542111111111122
Q ss_pred HHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHc
Q 004891 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL 165 (725)
Q Consensus 86 ~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~ 165 (725)
...++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++ |++++|++++|..++++|+++
T Consensus 83 ~~~~~-~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~lt 158 (249)
T PRK07938 83 CFAAF-RAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFT 158 (249)
T ss_pred HHHHH-HHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHh
Confidence 33455 56899999999999999999999999999999999999999999999986 456789999999999999999
Q ss_pred CCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhHH
Q 004891 166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245 (725)
Q Consensus 166 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 245 (725)
|++++|+||+++||||+|||++++++++.+++++++..++..++
T Consensus 159 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------------ 202 (249)
T PRK07938 159 AATITAAELHHFGSVEEVVPRDQLDEAALEVARKIAAKDTRVIR------------------------------------ 202 (249)
T ss_pred CCcCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------------
Confidence 99999999999999999999999999999999999998875433
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhh
Q 004891 246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT 292 (725)
Q Consensus 246 ~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~ 292 (725)
.+|+.++.....++++.++.|...+..++.++|+++++++|++||+|
T Consensus 203 ~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p 249 (249)
T PRK07938 203 AAKEALNGIDPQDVERSYRWEQGFTFELNLAGVSDEHRDAFVEKRKA 249 (249)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCC
Confidence 46778887777888999999999999999999999999999999875
No 53
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=3.1e-47 Score=396.09 Aligned_cols=250 Identities=23% Similarity=0.325 Sum_probs=219.0
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC-Cc--c
Q 004891 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-GD--V 79 (725)
Q Consensus 4 ~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~-~~--~ 79 (725)
+++.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...... .. .
T Consensus 8 ~~i~~~~-~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 86 (275)
T PRK09120 8 DTVKVEV-EDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQ 86 (275)
T ss_pred ccEEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHH
Confidence 5588888 7899999999995 7999999999999999999999999999999999999999999987532111 11 1
Q ss_pred cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (725)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (725)
.........++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|
T Consensus 87 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a 165 (275)
T PRK09120 87 ERIRREAYGWW-RRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDA 165 (275)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHH
Confidence 11111233445 56899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (725)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (725)
++|+++|++++|+||+++|||++|||++++.+++.+++++|++.||.+++
T Consensus 166 ~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~------------------------------ 215 (275)
T PRK09120 166 LYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLEKNPVVLR------------------------------ 215 (275)
T ss_pred HHHHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875433
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHH--HHHHHhCCH-hHHHHHHHHHhhhh
Q 004891 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAK--VFKELVMLD-TSRGLVHVFFAQRA 291 (725)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~--~~~~~~~s~-~~~~~i~aF~~~r~ 291 (725)
.+|+.++.....++++.++.|.. .+..++.++ |+++++++|++||.
T Consensus 216 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~d~~eg~~afl~kr~ 264 (275)
T PRK09120 216 ------AAKDGFKRVRELTWDQAEDYLYAKLEQANSLDPEGGREEGLKQFLDDKS 264 (275)
T ss_pred ------HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhccc
Confidence 56778888878888899888764 455678998 89999999999888
No 54
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=2.4e-47 Score=397.64 Aligned_cols=246 Identities=25% Similarity=0.420 Sum_probs=218.1
Q ss_pred cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC---Cc-------cc
Q 004891 12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA---GD-------VS 80 (725)
Q Consensus 12 ~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~---~~-------~~ 80 (725)
+++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++...... .. ..
T Consensus 15 ~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 94 (275)
T PLN02664 15 NSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLR 94 (275)
T ss_pred CCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhhHHHHH
Confidence 6899999999995 7999999999999999999999999999999999999999999988542110 00 00
Q ss_pred ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHH
Q 004891 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (725)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 160 (725)
.+....++++ +.|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|+
T Consensus 95 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~ 173 (275)
T PLN02664 95 RKIKFLQDAI-TAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGYGNAM 173 (275)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCHHHHH
Confidence 1112233455 568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCc-chHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891 161 EMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (725)
Q Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (725)
+|++||++++|+||+++||||+|||+ +++.+.+.++++++++.+|..++
T Consensus 174 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~p~a~~------------------------------ 223 (275)
T PLN02664 174 ELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKSPLAVT------------------------------ 223 (275)
T ss_pred HHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999985 88999999999999998875433
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
.+|++++.....+++++++.|...+..++.|+|+++++++|++||+|.+
T Consensus 224 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~ 272 (275)
T PLN02664 224 ------GTKAVLLRSRELSVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKRKPVF 272 (275)
T ss_pred ------HHHHHHHHHhcCCHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCC
Confidence 4577787777788999999999999999999999999999999998774
No 55
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.5e-47 Score=392.70 Aligned_cols=251 Identities=31% Similarity=0.442 Sum_probs=225.9
Q ss_pred CcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccccc
Q 004891 4 PRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (725)
Q Consensus 4 ~~i~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (725)
+.+.++. +++|++|||||| +.|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++....... ..+
T Consensus 5 ~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~--~~~ 81 (259)
T PRK06688 5 TDLLVEL-EDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKP--PDE 81 (259)
T ss_pred CceEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcch--HHH
Confidence 5688888 789999999999 689999999999999999999999999999999999999999999986532211 122
Q ss_pred chhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHH
Q 004891 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (725)
Q Consensus 83 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l 162 (725)
.....+++ +.|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|..+|++|
T Consensus 82 ~~~~~~~~-~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l 160 (259)
T PRK06688 82 LAPVNRFL-RAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEM 160 (259)
T ss_pred HHHHHHHH-HHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHHH
Confidence 33445566 66899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCCh
Q 004891 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (725)
Q Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (725)
+++|++++|+||+++||||+|+|++++.+++.++++++++.++.++
T Consensus 161 ~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~~~~a~---------------------------------- 206 (259)
T PRK06688 161 LLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGPASAL---------------------------------- 206 (259)
T ss_pred HHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHH----------------------------------
Confidence 9999999999999999999999999999999999999998876432
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
..+|+.++.....++++++..|.+.+..++.++++++++++|+++|+|++
T Consensus 207 --~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~~~~~p~~ 256 (259)
T PRK06688 207 --RYTKRAINAATLTELEEALAREAAGFGRLLRTPDFREGATAFIEKRKPDF 256 (259)
T ss_pred --HHHHHHHHhhhhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence 24567788877888999999999999999999999999999999988764
No 56
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=3.8e-47 Score=392.61 Aligned_cols=253 Identities=25% Similarity=0.357 Sum_probs=215.1
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCcccc
Q 004891 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSL 81 (725)
Q Consensus 4 ~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~ 81 (725)
+.+.++.++++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++...........
T Consensus 2 ~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 81 (259)
T TIGR01929 2 TDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGV 81 (259)
T ss_pred ceEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhH
Confidence 457777635789999999995 7999999999999999999999999999999999 79999999998743211110000
Q ss_pred cchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHH
Q 004891 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (725)
Q Consensus 82 ~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~ 161 (725)
.......++ +.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|+.+|++
T Consensus 82 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~ 160 (259)
T TIGR01929 82 HRLNVLDVQ-RQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKARE 160 (259)
T ss_pred HHHHHHHHH-HHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHH
Confidence 001123445 6689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCC
Q 004891 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241 (725)
Q Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (725)
|+++|++++|+||+++||||+|||++++.+++.++|+++++.|+.+++
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------- 208 (259)
T TIGR01929 161 IWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREILQKSPMAIR-------------------------------- 208 (259)
T ss_pred HHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence 999999999999999999999999999999999999999999875443
Q ss_pred hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
.+|++++..... ....++.|.+.+..++.|+|+++++++|++||+|++
T Consensus 209 ----~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~ 256 (259)
T TIGR01929 209 ----MLKAALNADCDG-QAGLQELAGNATMLFYMTEEGQEGRNAFLEKRQPDF 256 (259)
T ss_pred ----HHHHHHHhhhcc-chHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Confidence 345566554332 345566677889999999999999999999998774
No 57
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=7.2e-47 Score=389.89 Aligned_cols=252 Identities=27% Similarity=0.315 Sum_probs=213.5
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCccc
Q 004891 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS 80 (725)
Q Consensus 3 ~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 80 (725)
|++|.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++..... . ..
T Consensus 1 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~-~-~~ 77 (256)
T TIGR03210 1 YEDILYEK-RNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYD-G-RG 77 (256)
T ss_pred CCceEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcccc-c-hh
Confidence 46788888 7899999999995 7999999999999999999999999999999998 69999999998843111 1 11
Q ss_pred ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHH
Q 004891 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (725)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 160 (725)
.+......++ +.|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..+|+
T Consensus 78 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~ 156 (256)
T TIGR03210 78 TIGLPMEELH-SAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAR 156 (256)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHH
Confidence 1112234455 679999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCC
Q 004891 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (725)
Q Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (725)
+|+++|++++|+||+++||||+|||++++.+++.++++++++.|+.+++
T Consensus 157 ~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~------------------------------- 205 (256)
T TIGR03210 157 EIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKSPTAIA------------------------------- 205 (256)
T ss_pred HHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCCHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999998875433
Q ss_pred ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCC
Q 004891 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (725)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~ 295 (725)
.+|++++......... ...|...+..++.|+|+++++.+|++||+|.+.
T Consensus 206 -----~~K~~l~~~~~~~~~~-~~~~~~~~~~~~~~~d~~e~~~af~~kr~p~~~ 254 (256)
T TIGR03210 206 -----IAKRSFNMDTAHQRGI-AGMGMYALKLYYDTAESREGVKAFQEKRKPEFR 254 (256)
T ss_pred -----HHHHHHHHhhcccchH-HHHHHHHHHHHccChhHHHHHHHHhccCCCCCC
Confidence 3455665543322111 113456788899999999999999999987753
No 58
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.3e-47 Score=392.08 Aligned_cols=251 Identities=23% Similarity=0.286 Sum_probs=223.0
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccccc
Q 004891 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (725)
Q Consensus 4 ~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (725)
+++.++. +++|++||||||+ .|++|.+|+.+|.++++++ .|+++|+|||||.|++||+|+|++++...........+
T Consensus 6 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 83 (260)
T PRK07659 6 ESVVVKY-EGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGV 83 (260)
T ss_pred ceEEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHH
Confidence 3588888 7899999999995 7999999999999999999 58899999999999999999999998642211112222
Q ss_pred chhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHH
Q 004891 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (725)
Q Consensus 83 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l 162 (725)
.....+++ ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|
T Consensus 84 ~~~~~~~~-~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l 162 (260)
T PRK07659 84 MNTISEIV-VTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQI 162 (260)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHH
Confidence 33344555 56899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCCh
Q 004891 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (725)
Q Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (725)
+++|++++|+||+++||||+|| ++++.+++.++++++++.|+.++
T Consensus 163 ~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~~~~~~a~---------------------------------- 207 (260)
T PRK07659 163 IWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWLQKPLKAM---------------------------------- 207 (260)
T ss_pred HHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHHhCCHHHH----------------------------------
Confidence 9999999999999999999999 78899999999999999886433
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
..+|++++.....++++.++.|.+.+..++.|+++++++.+|++||+|+.
T Consensus 208 --~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~ 257 (260)
T PRK07659 208 --IETKQIYCELNRSQLEQVLQLEKRAQYAMRQTADHKEGIRAFLEKRLPVF 257 (260)
T ss_pred --HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence 25677788777888999999999999999999999999999999998774
No 59
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=6.5e-47 Score=391.01 Aligned_cols=253 Identities=21% Similarity=0.296 Sum_probs=221.6
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC--CCCCcCCCCchhhhhccCCC
Q 004891 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--GGRFSGGFDINVFQKVHGAG 77 (725)
Q Consensus 1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~--g~~F~aG~Dl~~~~~~~~~~ 77 (725)
|+++.+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+ +|+|||||. |++||+|+|++++......
T Consensus 1 ~~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~- 77 (261)
T PRK11423 1 MSMQYVNVVT-INKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRD- 77 (261)
T ss_pred CCccceEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhcccc-
Confidence 8999999999 7899999999995 79999999999999999999887 999999986 3799999999987532111
Q ss_pred cccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHH
Q 004891 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (725)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~ 157 (725)
...+.....+++ +.|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|..
T Consensus 78 -~~~~~~~~~~l~-~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~ 155 (261)
T PRK11423 78 -PLSYDDPLRQIL-RMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFH 155 (261)
T ss_pred -HHHHHHHHHHHH-HHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHH
Confidence 112223334555 668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 004891 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (725)
Q Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (725)
++++|+++|++++|+||+++||||+|||++++++.+.++++++++.+|..++
T Consensus 156 ~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~---------------------------- 207 (261)
T PRK11423 156 IVKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIA---------------------------- 207 (261)
T ss_pred HHHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999998875433
Q ss_pred CCCChhHHHHHHHHHHhhc-CCH-HHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 238 APNMPQHQACLDVIEEGIV-HGG-YSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~-~~~-~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
.+|++++.... .+. +..++.|.+.+..++.|+|+++++.+|++||+|++
T Consensus 208 --------~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~~kr~p~~ 258 (261)
T PRK11423 208 --------VIKEQLRVLGEAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKRKPVF 258 (261)
T ss_pred --------HHHHHHHhhcccCCcchHHHHHHHHHHHHHhCChhHHHHHHHHhccCCCCC
Confidence 45666665432 233 67888899999999999999999999999998774
No 60
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9e-47 Score=389.47 Aligned_cols=251 Identities=23% Similarity=0.327 Sum_probs=224.0
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccc
Q 004891 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (725)
Q Consensus 3 ~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (725)
++++.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...........
T Consensus 1 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 79 (255)
T PRK07260 1 FEHIIYEV-EDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQS 79 (255)
T ss_pred CCceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhh
Confidence 35788888 7899999999995 799999999999999999999999999999999999999999999864221111111
Q ss_pred ---cchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHH
Q 004891 82 ---MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (725)
Q Consensus 82 ---~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (725)
+.....+++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus 80 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~ 158 (255)
T PRK07260 80 LVKIAELVNEIS-FAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNR 158 (255)
T ss_pred HHHHHHHHHHHH-HHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHH
Confidence 122334455 5689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 004891 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (725)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (725)
+++|+++|++++|+||+++||||+++|++++.+.+.++++++++.++.+++
T Consensus 159 a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------- 209 (255)
T PRK07260 159 ATHLAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGSSNSYA----------------------------- 209 (255)
T ss_pred HHHHHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998875433
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhh
Q 004891 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA 291 (725)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~ 291 (725)
.+|+.++.....++++.+..|...+..++.|+++++++++|++||+
T Consensus 210 -------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~ 255 (255)
T PRK07260 210 -------AIKSLVWESFFKGWEDYAKLELALQESLAFKEDFKEGVRAFSERRR 255 (255)
T ss_pred -------HHHHHHHHHhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence 5677888877888999999999999999999999999999999875
No 61
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=8.8e-47 Score=392.67 Aligned_cols=256 Identities=19% Similarity=0.254 Sum_probs=224.2
Q ss_pred CcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC--CCCcCCCCchhhhhccCCCc-cc
Q 004891 4 PRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG--GRFSGGFDINVFQKVHGAGD-VS 80 (725)
Q Consensus 4 ~~i~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g--~~F~aG~Dl~~~~~~~~~~~-~~ 80 (725)
+.|.++.++++|++||||||+.|++|.+|+++|.++++++++|+++|+|||||.| ++||+|+|++++........ ..
T Consensus 11 ~~i~~~~~~~~Va~itlnr~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~ 90 (278)
T PLN03214 11 PGVRVDRRPGGIAVVWLAKEPVNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYA 90 (278)
T ss_pred CceEEEEcCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHH
Confidence 4678887458899999999988999999999999999999999999999999987 69999999998753211111 11
Q ss_pred ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCC-CCCchhhchHhhhhCHHHH
Q 004891 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGV-IPGFGGTQRLPRLVGLSKA 159 (725)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl-~p~~g~~~~l~r~vG~~~a 159 (725)
.+......++ ..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+ +|+++++++|++++|..++
T Consensus 91 ~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a 169 (278)
T PLN03214 91 EFWLTQTTFL-VRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVA 169 (278)
T ss_pred HHHHHHHHHH-HHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHHHH
Confidence 1111123345 5689999999999999999999999999999999999999999999999 5999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (725)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (725)
++|+++|+.++|+||+++||||+|||.+++.+.+.+++++++..++..++
T Consensus 170 ~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------ 219 (278)
T PLN03214 170 ESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERALKLPSAARA------------------------------ 219 (278)
T ss_pred HHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHcCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875332
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCC
Q 004891 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (725)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~ 296 (725)
.+|+.++.....+++++++.|.+.+..++.|+|+++++++|++|.+.+|.+
T Consensus 220 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~aflek~~~~~~~ 270 (278)
T PLN03214 220 ------ATKALLREEFSAAWEAYYEEEAKGGWKMLSEPSIIKALGGVMERLSSGKEK 270 (278)
T ss_pred ------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccc
Confidence 457777777777889999999999999999999999999999999988755
No 62
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=1.8e-46 Score=390.39 Aligned_cols=253 Identities=26% Similarity=0.364 Sum_probs=217.0
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCccc
Q 004891 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS 80 (725)
Q Consensus 3 ~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 80 (725)
++.+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....... ..
T Consensus 12 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~-~~ 89 (273)
T PRK07396 12 YEDILYKS-ADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVD-DD 89 (273)
T ss_pred CcceEEEe-cCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccc-hh
Confidence 46788888 7899999999995 7999999999999999999999999999999999 5999999999875321111 00
Q ss_pred ccch-hHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891 81 LMPD-VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (725)
Q Consensus 81 ~~~~-~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (725)
.... ....++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|
T Consensus 90 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a 168 (273)
T PRK07396 90 GVPRLNVLDLQ-RLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKA 168 (273)
T ss_pred hhhhhHHHHHH-HHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHH
Confidence 0111 122344 56889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (725)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (725)
++|+++|++++|+||+++||||+|||++++.+++.++|+++++.++.+++
T Consensus 169 ~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 218 (273)
T PRK07396 169 REIWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALR------------------------------ 218 (273)
T ss_pred HHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875433
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCC
Q 004891 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (725)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~ 295 (725)
.+|+.++.... ..+...+.|.+.+..++.|+|+++++.+|++||+|.+.
T Consensus 219 ------~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~~ 267 (273)
T PRK07396 219 ------CLKAALNADCD-GQAGLQELAGNATMLFYMTEEAQEGRNAFNEKRQPDFS 267 (273)
T ss_pred ------HHHHHHHhhhc-cHHHHHHHHHHHHHHHhcChhHHHHHHHHhCCCCCCCC
Confidence 34556655433 34555567888889999999999999999999988754
No 63
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-46 Score=394.93 Aligned_cols=257 Identities=25% Similarity=0.347 Sum_probs=219.5
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccC-C--
Q 004891 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG-A-- 76 (725)
Q Consensus 1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~-~-- 76 (725)
|+++.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..... .
T Consensus 1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 79 (296)
T PRK08260 1 MTYETIRYDV-ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAP 79 (296)
T ss_pred CCcceEEEee-eCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhccccccc
Confidence 7788899998 7899999999995 799999999999999999999999999999999999999999998753100 0
Q ss_pred ---------Cccc----ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCC
Q 004891 77 ---------GDVS----LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG 143 (725)
Q Consensus 77 ---------~~~~----~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~ 143 (725)
.... .+......++ ..|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~ 158 (296)
T PRK08260 80 RTPVEADEEDRADPSDDGVRDGGGRVT-LRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPE 158 (296)
T ss_pred ccccccccccccchhHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCC
Confidence 0000 1111223445 6689999999999999999999999999999999999999999999999999
Q ss_pred chhhchHhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhc-CchhhhhhhccCCCCChHH
Q 004891 144 FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSE 222 (725)
Q Consensus 144 ~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~-~~~~~~~~~~~~~~~~~~~ 222 (725)
+|++++|++++|..+|++|+++|++++|+||+++||||+|||++++.+++.+++++++.. ++.++
T Consensus 159 ~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~~a~-------------- 224 (296)
T PRK08260 159 AASSWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIADNTSPVSV-------------- 224 (296)
T ss_pred cchhhhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHHhcCChHHH--------------
Confidence 999999999999999999999999999999999999999999999999999999999985 55432
Q ss_pred HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhc--CCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCC
Q 004891 223 AREVLKLARLQAKKTAPNMPQHQACLDVIEEGIV--HGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (725)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~ 296 (725)
..+|++++.... .... ....|...+..++.|+++++++.+|++||+|...+
T Consensus 225 ----------------------~~~K~~l~~~~~~~~~~~-~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~f~~ 277 (296)
T PRK08260 225 ----------------------ALTRQMMWRMAGADHPME-AHRVDSRAIYSRGRSGDGKEGVSSFLEKRPAVFPG 277 (296)
T ss_pred ----------------------HHHHHHHHhcccCCCcHH-HHHHHHHHHHHHccChhHHHHHHHHhcCCCCCCCC
Confidence 245666766532 2233 34668888999999999999999999999987654
No 64
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-46 Score=388.68 Aligned_cols=250 Identities=26% Similarity=0.409 Sum_probs=215.3
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCccc
Q 004891 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS 80 (725)
Q Consensus 3 ~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 80 (725)
++.+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.| ++||+|+|++++..........
T Consensus 7 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 85 (262)
T PRK06144 7 TDELLLEV-RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAV 85 (262)
T ss_pred CCceEEEe-eCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHH
Confidence 45788888 7899999999995 7999999999999999999999999999999998 6999999999876432111111
Q ss_pred ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccc-cCCCCCchhhchHhhhhCHHHH
Q 004891 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT-LGVIPGFGGTQRLPRLVGLSKA 159 (725)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~-~Gl~p~~g~~~~l~r~vG~~~a 159 (725)
.+......++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||++ +|++|++|++++|++++|..+|
T Consensus 86 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a 164 (262)
T PRK06144 86 AYERRIDRVL-GALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARV 164 (262)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHH
Confidence 1222334555 5689999999999999999999999999999999999999999997 9999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (725)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (725)
++++++|++++|+||+++||||+|||++++.+++.++++++++.|+.+++
T Consensus 165 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~------------------------------ 214 (262)
T PRK06144 165 KDMLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLAAHAPLTLR------------------------------ 214 (262)
T ss_pred HHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875433
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
.+|+.++...... ++.+.+.+..++.++++++++.+|++||+|.+
T Consensus 215 ------~~K~~l~~~~~~~----l~~~~~~~~~~~~~~~~~e~~~af~~kr~p~~ 259 (262)
T PRK06144 215 ------ATKEALRRLRREG----LPDGDDLIRMCYMSEDFREGVEAFLEKRPPKW 259 (262)
T ss_pred ------HHHHHHHHhhhcC----HHHHHHHHHHHhcChHHHHHHHHHhcCCCCCC
Confidence 3455665544333 34456788889999999999999999998764
No 65
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.7e-46 Score=384.81 Aligned_cols=248 Identities=28% Similarity=0.335 Sum_probs=216.8
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 004891 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (725)
Q Consensus 1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (725)
|+ +++.++. +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++..... ...
T Consensus 1 ~~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~-~~~ 77 (254)
T PRK08259 1 MS-MSVRVER-NGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRG-NRL 77 (254)
T ss_pred CC-ceEEEEE-ECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccc-hhh
Confidence 66 4588888 7899999999995 799999999999999999999999999999999999999999998754211 111
Q ss_pred cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (725)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (725)
... ...... ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus 78 ~~~--~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a 154 (254)
T PRK08259 78 HPS--GDGPMG-PSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRA 154 (254)
T ss_pred hhh--hcchhh-hHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 100 011112 12347999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (725)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (725)
++|+++|++++|+||+++||||+|||.+++.+++.++|+++++.|+.+++
T Consensus 155 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 204 (254)
T PRK08259 155 MDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAFPQTCLR------------------------------ 204 (254)
T ss_pred HHHHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875433
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhh
Q 004891 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA 291 (725)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~ 291 (725)
.+|++++.....+++++++.|...+..++. +|+++++.+|++|++
T Consensus 205 ------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~-~d~~egi~af~~~~~ 249 (254)
T PRK08259 205 ------ADRLSALEQWGLPEEAALANEFAHGLAVLA-AEALEGAARFAAGAG 249 (254)
T ss_pred ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhhc
Confidence 457778777778899999999998888887 999999999998766
No 66
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.9e-46 Score=384.47 Aligned_cols=247 Identities=24% Similarity=0.403 Sum_probs=216.9
Q ss_pred CCCCcEEEEEecC---cEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC
Q 004891 1 MAAPRVTMEVGND---GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA 76 (725)
Q Consensus 1 M~~~~i~~~~~~~---~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~ 76 (725)
|+ +.|.++. ++ +|++||||||+ .|++|.+|+++|.++++.+++|+++|+|||||.|++||+|+|++++......
T Consensus 1 m~-~~i~~~~-~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~ 78 (251)
T PRK06023 1 MT-DHILVER-PGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMG 78 (251)
T ss_pred CC-ceEEEEe-ecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhcccc
Confidence 66 4688888 44 59999999995 7999999999999999999999999999999999999999999987542111
Q ss_pred CcccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCH
Q 004891 77 GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156 (725)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~ 156 (725)
. ..+.....+++ +.|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|+++++++++|.
T Consensus 79 ~--~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~ 155 (251)
T PRK06023 79 G--TSFGSEILDFL-IALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGH 155 (251)
T ss_pred c--hhhHHHHHHHH-HHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhH
Confidence 1 11222334555 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHH
Q 004891 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK 236 (725)
Q Consensus 157 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (725)
.++++|+++|++++|+||+++||||+|||.+++.+++.++++++++.|+.+++
T Consensus 156 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~--------------------------- 208 (251)
T PRK06023 156 QRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKPPQALQ--------------------------- 208 (251)
T ss_pred HHHHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999998875433
Q ss_pred hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhh
Q 004891 237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ 289 (725)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~ 289 (725)
.+|++++... .+++++++.|.+.+..++.|+++++++++|+++
T Consensus 209 ---------~~K~~l~~~~-~~l~~~~~~e~~~~~~~~~~~~~~e~~~af~e~ 251 (251)
T PRK06023 209 ---------IARDLMRGPR-EDILARIDEEAKHFAARLKSAEARAAFEAFMRR 251 (251)
T ss_pred ---------HHHHHHHhch-hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence 4466666543 468888999999999999999999999999874
No 67
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-46 Score=388.79 Aligned_cols=251 Identities=25% Similarity=0.292 Sum_probs=211.8
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc-cc
Q 004891 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VS 80 (725)
Q Consensus 3 ~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~-~~ 80 (725)
|+.|.++.++++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++........ ..
T Consensus 10 ~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 89 (268)
T PRK07327 10 YPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRA 89 (268)
T ss_pred CCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHH
Confidence 5678888745789999999996 799999999999999999999999999999999999999999998764221111 11
Q ss_pred ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHH
Q 004891 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (725)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 160 (725)
.+......++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|+
T Consensus 90 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 168 (268)
T PRK07327 90 RVWREARDLV-YNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAK 168 (268)
T ss_pred HHHHHHHHHH-HHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHHHH
Confidence 1122233455 568899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCC
Q 004891 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (725)
Q Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (725)
+|+++|++++|+||+++||||+|+|++++.+++.++|+++++.|+..++
T Consensus 169 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------- 217 (268)
T PRK07327 169 YYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAGSQTAIR------------------------------- 217 (268)
T ss_pred HHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCCHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999998875433
Q ss_pred ChhHHHHHHHHHHhh---cCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 241 MPQHQACLDVIEEGI---VHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 241 ~~a~~~~~~~~~~~~---~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
.+|++++... ..+++..+..|. .++.|+++++++.+|++||+|.+
T Consensus 218 -----~~K~~l~~~~~~~~~~~~~~~~~~~----~~~~~~d~~eg~~af~ekr~p~~ 265 (268)
T PRK07327 218 -----WTKYALNNWLRMAGPTFDTSLALEF----MGFSGPDVREGLASLREKRAPDF 265 (268)
T ss_pred -----HHHHHHHHhhhhhhhhHHHHHHHHH----HHccChhHHHHHHHHHhcCCCCC
Confidence 3344554331 123445444442 47889999999999999998774
No 68
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-46 Score=385.76 Aligned_cols=247 Identities=27% Similarity=0.311 Sum_probs=219.0
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 004891 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (725)
Q Consensus 1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (725)
|+ +.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++....... .
T Consensus 1 m~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~ 77 (249)
T PRK05870 1 MM-DPVLLDV-DDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRP-A 77 (249)
T ss_pred CC-ccEEEEc-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccc-h
Confidence 55 3578888 7899999999995 79999999999999999999999999999999999999999999986432211 1
Q ss_pred cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (725)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (725)
........+.+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.++
T Consensus 78 ~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a 156 (249)
T PRK05870 78 EDGLRRIYDGF-LAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVA 156 (249)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHH
Confidence 11122233445 55889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (725)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (725)
++|+++|++++|+||+++||||+|| +++.+++.++++++++.||.+++
T Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~~~a~~------------------------------ 204 (249)
T PRK05870 157 RAALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPAAAPRELVL------------------------------ 204 (249)
T ss_pred HHHHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 9999999999999999999999999 78999999999999999875433
Q ss_pred CChhHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhh
Q 004891 240 NMPQHQACLDVIEEGIV-HGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ 289 (725)
Q Consensus 240 ~~~a~~~~~~~~~~~~~-~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~ 289 (725)
.+|+.++.... .+++++++.|.+.+..++.|+|+++++++|+++
T Consensus 205 ------~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~~ 249 (249)
T PRK05870 205 ------ATKASMRATASLAQHAAAVEFELGPQAASVQSPEFAARLAAAQRR 249 (249)
T ss_pred ------HHHHHHHhccccCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcC
Confidence 56778887777 789999999999999999999999999999874
No 69
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.5e-46 Score=382.49 Aligned_cols=250 Identities=28% Similarity=0.410 Sum_probs=223.5
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 004891 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (725)
Q Consensus 1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (725)
|+++.+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.......
T Consensus 1 ~~~~~v~~~~-~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~-- 77 (258)
T PRK06190 1 MTEPILLVET-HDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAY-- 77 (258)
T ss_pred CCCceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchh--
Confidence 8999999999 8899999999995 79999999999999999999999999999999999999999999986421111
Q ss_pred cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (725)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (725)
.. .....+++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|
T Consensus 78 ~~-~~~~~~~~-~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 155 (258)
T PRK06190 78 GA-QDALPNPS-PAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRA 155 (258)
T ss_pred hH-HHHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHH
Confidence 11 12234555 67999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (725)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (725)
++|+++|++++|+||+++||||+++|++++.+++.++++++++.|+.+++
T Consensus 156 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 205 (258)
T PRK06190 156 RRMSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNNPAAVR------------------------------ 205 (258)
T ss_pred HHHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875433
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCC---HhHHHHHHHHHhhhh
Q 004891 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVML---DTSRGLVHVFFAQRA 291 (725)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s---~~~~~~i~aF~~~r~ 291 (725)
.+|++++.....+++++++.|...+..++.| +..++....|.++-+
T Consensus 206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 254 (258)
T PRK06190 206 ------ALKASYDDGAAAQTGDALALEAEAARAHNRSVSPDGIAARREAVMARGR 254 (258)
T ss_pred ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhh
Confidence 5678888888889999999999999999999 667777777776544
No 70
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.2e-46 Score=389.38 Aligned_cols=254 Identities=25% Similarity=0.339 Sum_probs=215.5
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc---c
Q 004891 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD---V 79 (725)
Q Consensus 4 ~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~---~ 79 (725)
+.+.++..+++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++........ .
T Consensus 9 ~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~ 88 (276)
T PRK05864 9 SLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRP 88 (276)
T ss_pred CceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccch
Confidence 457777546789999999995 799999999999999999999999999999999999999999998743211100 0
Q ss_pred ---cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCC-CchhhchHhhhhC
Q 004891 80 ---SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIP-GFGGTQRLPRLVG 155 (725)
Q Consensus 80 ---~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p-~~g~~~~l~r~vG 155 (725)
........+++ +.|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|++++|
T Consensus 89 ~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG 167 (276)
T PRK05864 89 TYALRSMELLDDVI-LALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIG 167 (276)
T ss_pred hHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhC
Confidence 01112233455 568899999999999999999999999999999999999999999999997 7889999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHH
Q 004891 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK 235 (725)
Q Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (725)
..+|++|+++|++++|+||+++||||+|+|++++.+++.++|++|+..||.+++
T Consensus 168 ~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~-------------------------- 221 (276)
T PRK05864 168 SSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFSRPGIE-------------------------- 221 (276)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHH--------------------------
Confidence 999999999999999999999999999999999999999999999998875432
Q ss_pred HhCCCChhHHHHHHHHHHhhcC-CHHHHHHHHHHHHH-HHhCCHhHHHHHHHHHhhhhhcC
Q 004891 236 KTAPNMPQHQACLDVIEEGIVH-GGYSGVLKEAKVFK-ELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~l~~E~~~~~-~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
.+|+.++..... ++++++..|..... .++.|+|+++++++|++||+|..
T Consensus 222 ----------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~~kr~p~~ 272 (276)
T PRK05864 222 ----------LTKRTLWSGLDAASLEAHMQAEGLGQLFVRLLTANFEEAVAARAEKRPPVF 272 (276)
T ss_pred ----------HHHHHHHhhcccCCHHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCC
Confidence 456677666554 68888887765322 35789999999999999998774
No 71
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=7.7e-46 Score=380.50 Aligned_cols=244 Identities=26% Similarity=0.364 Sum_probs=210.3
Q ss_pred EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchh
Q 004891 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (725)
Q Consensus 6 i~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (725)
|.+++ +++|++||||||+.|++|.+|+++|.+++++++.|+++|+|||||.|++||+|.|++++... . .......
T Consensus 3 v~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~---~-~~~~~~~ 77 (251)
T TIGR03189 3 VWLER-DGKLLRLRLARPKANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPD---Q-CAAMLAS 77 (251)
T ss_pred EEEEe-eCCEEEEEeCCCCcCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCch---h-HHHHHHH
Confidence 67777 78999999999988999999999999999999999999999999999999999999986321 1 1111222
Q ss_pred HHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHc
Q 004891 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL 165 (725)
Q Consensus 86 ~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~ 165 (725)
..+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++++|++++|..+|++|+++
T Consensus 78 ~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~-~~~~~l~~~vg~~~a~~l~lt 155 (251)
T TIGR03189 78 LHKLV-IAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAP-AASCLLPERMGRVAAEDLLYS 155 (251)
T ss_pred HHHHH-HHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCC-chHHHHHHHhCHHHHHHHHHc
Confidence 33455 6689999999999999999999999999999999999999999999999997 457899999999999999999
Q ss_pred CCCCCHHHHHHcCCcceecCcchHHHHHHHH-HHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhH
Q 004891 166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLW-ALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (725)
Q Consensus 166 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~-a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (725)
|++++|+||+++||||+|+|+.+ +.+.++ ++++++.||.+++
T Consensus 156 g~~~~a~eA~~~Glv~~v~~~~~--~~a~~~~a~~la~~~p~a~~----------------------------------- 198 (251)
T TIGR03189 156 GRSIDGAEGARIGLANAVAEDPE--NAALAWFDEHPAKLSASSLR----------------------------------- 198 (251)
T ss_pred CCCCCHHHHHHCCCcceecCcHH--HHHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence 99999999999999999997543 466665 6889988875433
Q ss_pred HHHHHHHHHhhcCCHHHHH-HHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 245 QACLDVIEEGIVHGGYSGV-LKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l-~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
.+|++++.....++++++ ..|...+..++.|+|+++++++|++||++.+
T Consensus 199 -~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~ 248 (251)
T TIGR03189 199 -FAVRAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLEKRPALW 248 (251)
T ss_pred -HHHHHHHhhhcccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcCCCCC
Confidence 456777777777788776 4788889999999999999999999998874
No 72
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-45 Score=387.76 Aligned_cols=253 Identities=22% Similarity=0.213 Sum_probs=215.0
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchh-hhh---c-c
Q 004891 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINV-FQK---V-H 74 (725)
Q Consensus 1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~-~~~---~-~ 74 (725)
|+++.+.++. +++|++||||||+ .|+||.+|+++|.+++++++.|++||+|||||.|++||+|+|+++ +.. . .
T Consensus 2 ~~~~~v~~~~-~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~ 80 (298)
T PRK12478 2 PDFQTLLYTT-AGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMM 80 (298)
T ss_pred CCceEEEEec-cCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcc
Confidence 7788899988 7899999999994 799999999999999999999999999999999999999999986 321 0 0
Q ss_pred CCC---ccccc---c-h--hHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCccccc-CCCCCc
Q 004891 75 GAG---DVSLM---P-D--VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL-GVIPGF 144 (725)
Q Consensus 75 ~~~---~~~~~---~-~--~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~-Gl~p~~ 144 (725)
... ....+ . . .....+ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++ |++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~-- 157 (298)
T PRK12478 81 TDGRWDPGKDFAMVTARETGPTQKF-MAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL-- 157 (298)
T ss_pred cccccCchhhhhhhhhhhcchHHHH-HHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--
Confidence 000 00111 0 0 011244 45889999999999999999999999999999999999999999997 8875
Q ss_pred hhhchHhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHH
Q 004891 145 GGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAR 224 (725)
Q Consensus 145 g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~ 224 (725)
++++ .+++|..+|++|++||++++|+||+++||||+|||++++.+++.++|++++..|+.+++
T Consensus 158 ~~~~--~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~--------------- 220 (298)
T PRK12478 158 TGMW--LYRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARIPLSQLQ--------------- 220 (298)
T ss_pred hhHH--HHHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH---------------
Confidence 3333 35699999999999999999999999999999999999999999999999998875433
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhCCHhHH--------HHHHHHHhhhhhcCC
Q 004891 225 EVLKLARLQAKKTAPNMPQHQACLDVIEEGIV-HGGYSGVLKEAKVFKELVMLDTSR--------GLVHVFFAQRATSKV 295 (725)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~l~~E~~~~~~~~~s~~~~--------~~i~aF~~~r~~~~~ 295 (725)
.+|++++.... .+++++++.|...+..++.|+|++ +++.+|++||+|...
T Consensus 221 ---------------------~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~ekR~p~f~ 279 (298)
T PRK12478 221 ---------------------AQKLIVNQAYENMGLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAVERRDGPFG 279 (298)
T ss_pred ---------------------HHHHHHHHHHHhcchhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 45777777666 469999999999999999999997 599999999998754
No 73
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-45 Score=383.04 Aligned_cols=250 Identities=28% Similarity=0.439 Sum_probs=219.8
Q ss_pred CcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccccc
Q 004891 4 PRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (725)
Q Consensus 4 ~~i~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (725)
+.+.+++ +++|++|||||| +.|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++....... ....
T Consensus 3 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~~~~ 80 (262)
T PRK07509 3 DRVSVTI-EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNA-VKLL 80 (262)
T ss_pred ceEEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchh-hhhH
Confidence 5788998 889999999999 589999999999999999999999999999999999999999999886422111 1111
Q ss_pred -------chhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhC
Q 004891 83 -------PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (725)
Q Consensus 83 -------~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG 155 (725)
.....+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus 81 ~~~~~~~~~~~~~~~-~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g 159 (262)
T PRK07509 81 FKRLPGNANLAQRVS-LGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVR 159 (262)
T ss_pred hhhhHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhC
Confidence 11122334 5578999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHH
Q 004891 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK 235 (725)
Q Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (725)
..++++|+++|++++|+||+++||||+|++ ++.+++.++++++++.|+..++
T Consensus 160 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~--~~~~~a~~~a~~l~~~~~~~~~-------------------------- 211 (262)
T PRK07509 160 KDVARELTYTARVFSAEEALELGLVTHVSD--DPLAAALALAREIAQRSPDAIA-------------------------- 211 (262)
T ss_pred HHHHHHHHHcCCCcCHHHHHHcCChhhhhc--hHHHHHHHHHHHHHhCCHHHHH--------------------------
Confidence 999999999999999999999999999994 4688999999999998875333
Q ss_pred HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
.+|+.++.....++++++..|.+.+..++.++|+++++.+|++||+|..
T Consensus 212 ----------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~ 260 (262)
T PRK07509 212 ----------AAKRLINRSWTASVRALLARESVEQIRLLLGKNQKIAVKAQMKKRAPKF 260 (262)
T ss_pred ----------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 4577787777788999999999999999999999999999999988763
No 74
>PLN02921 naphthoate synthase
Probab=100.00 E-value=1.7e-45 Score=388.85 Aligned_cols=254 Identities=27% Similarity=0.309 Sum_probs=214.9
Q ss_pred CCcEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCcc
Q 004891 3 APRVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDV 79 (725)
Q Consensus 3 ~~~i~~~~~-~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~ 79 (725)
++.|.++.+ +++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++....... .
T Consensus 64 ~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~-~ 142 (327)
T PLN02921 64 FTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVG-P 142 (327)
T ss_pred CceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccc-h
Confidence 456778774 5899999999995 7999999999999999999999999999999999 7999999999875311110 0
Q ss_pred cccch-hHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHH
Q 004891 80 SLMPD-VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (725)
Q Consensus 80 ~~~~~-~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (725)
..... ...+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus 143 ~~~~~~~~~~l~-~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~ 221 (327)
T PLN02921 143 DDAGRLNVLDLQ-IQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKK 221 (327)
T ss_pred hHHHHHHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence 01111 112344 5688999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 004891 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (725)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (725)
|++|+++|++++|+||+++||||+|||++++.+++.+++++|++.++.+++
T Consensus 222 A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~al~----------------------------- 272 (327)
T PLN02921 222 AREMWFLARFYTASEALKMGLVNTVVPLDELEGETVKWCREILRNSPTAIR----------------------------- 272 (327)
T ss_pred HHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHHHHHHHccCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998875443
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCC
Q 004891 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (725)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~ 295 (725)
.+|++++..... .......|...+..++.|+|+++++.+|++||+|...
T Consensus 273 -------~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~f~ 321 (327)
T PLN02921 273 -------VLKSALNAADDG-HAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPDFS 321 (327)
T ss_pred -------HHHHHHHHhhcc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCC
Confidence 445666655432 3333444557888999999999999999999998753
No 75
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=1.3e-45 Score=381.58 Aligned_cols=252 Identities=37% Similarity=0.572 Sum_probs=218.9
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccc
Q 004891 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (725)
Q Consensus 2 ~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (725)
.+..+.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..........
T Consensus 3 ~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~ 81 (257)
T COG1024 3 TYETILVER-EDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAE 81 (257)
T ss_pred CCCeeEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHH
Confidence 456788888 6779999999995 79999999999999999999999999999999999999999999987511111111
Q ss_pred ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHH
Q 004891 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (725)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 160 (725)
.+......++ +.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|+
T Consensus 82 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~ 160 (257)
T COG1024 82 NLMQPGQDLL-RALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAK 160 (257)
T ss_pred HHHhHHHHHH-HHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHH
Confidence 2223333456 679999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCc-chHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891 161 EMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (725)
Q Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (725)
+|++||+.++++||+++|||+++++. +++.+.+.+++++++. +|..
T Consensus 161 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~-~~~a-------------------------------- 207 (257)
T COG1024 161 ELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA-PPLA-------------------------------- 207 (257)
T ss_pred HHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc-CHHH--------------------------------
Confidence 99999999999999999999999985 7999999999999987 4432
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhc
Q 004891 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 293 (725)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~ 293 (725)
...+|+.++.....++++.+..|...+...+.++|++|++++|++ |+|.
T Consensus 208 ----~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~~-r~p~ 256 (257)
T COG1024 208 ----LAATKRLVRAALEADLAEALEAEALAFARLFSSEDFREGVRAFLE-RKPV 256 (257)
T ss_pred ----HHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcChhHHHHHHHHHc-cCCC
Confidence 224567777776666889999999999999999999999999999 6553
No 76
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.8e-45 Score=376.29 Aligned_cols=243 Identities=19% Similarity=0.252 Sum_probs=214.9
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccch
Q 004891 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84 (725)
Q Consensus 6 i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (725)
|.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.... ...+..
T Consensus 2 i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~----~~~~~~ 76 (248)
T PRK06072 2 IKVES-REGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDF----AIDLRE 76 (248)
T ss_pred eEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhh----HHHHHH
Confidence 56777 7899999999995 79999999999999999999999999999999999999999999875321 111222
Q ss_pred hHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHH
Q 004891 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML 164 (725)
Q Consensus 85 ~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l 164 (725)
....++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|. +++++++
T Consensus 77 ~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~lll 154 (248)
T PRK06072 77 TFYPII-REIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEILV 154 (248)
T ss_pred HHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHHH
Confidence 334555 66899999999999999999999999999999999999999999999999999999999999996 8999999
Q ss_pred cCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhH
Q 004891 165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (725)
Q Consensus 165 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (725)
+|++++|+||+++||||++ +++.+++.++|+++++.|+.+++
T Consensus 155 ~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~~~~a~~----------------------------------- 196 (248)
T PRK06072 155 LGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRISNGPFQSYI----------------------------------- 196 (248)
T ss_pred hCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence 9999999999999999963 46789999999999998765332
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
.+|+.++.....++++.++.|.+.+..++.|+|+++++++|++||+|.+
T Consensus 197 -~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 245 (248)
T PRK06072 197 -AAKRMINLVLYNDLEEFLEYESAIQGYLGKTEDFKEGISSFKEKREPKF 245 (248)
T ss_pred -HHHHHHHHHhhcCHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCCC
Confidence 4567777777788999999999999999999999999999999998774
No 77
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=5.6e-45 Score=375.57 Aligned_cols=250 Identities=18% Similarity=0.211 Sum_probs=213.8
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 004891 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (725)
Q Consensus 1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (725)
|+|+.+.++. +++|++||||||+ .|++|.+|+++|.++++.++ +++|+|||||.|++||+|+|++++.........
T Consensus 1 ~~~~~i~~~~-~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~ 77 (255)
T PRK07112 1 MDYQTIRVRQ-QGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRA 77 (255)
T ss_pred CCCceEEEEe-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccchh
Confidence 7899999999 7899999999995 79999999999999999998 369999999999999999999988642211111
Q ss_pred c-ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHH
Q 004891 80 S-LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (725)
Q Consensus 80 ~-~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (725)
. .......+++ +.|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ +.+|++++|..+
T Consensus 78 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~ 155 (255)
T PRK07112 78 DLIDAEPLYDLW-HRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQK 155 (255)
T ss_pred hhhhHHHHHHHH-HHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHH
Confidence 1 1112233555 668999999999999999999999999999999999999999999999999865 568999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 004891 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (725)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (725)
+++|+++|++++|+||+++||||+|||+++. .+.++++++++.+|.+++
T Consensus 156 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~~~a~~l~~~~p~a~~----------------------------- 204 (255)
T PRK07112 156 AHYMTLMTQPVTAQQAFSWGLVDAYGANSDT--LLRKHLLRLRCLNKAAVA----------------------------- 204 (255)
T ss_pred HHHHHHhCCcccHHHHHHcCCCceecCcHHH--HHHHHHHHHHhCCHHHHH-----------------------------
Confidence 9999999999999999999999999987653 578899999988875433
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
.+|++++.. ...++++++.|.+.+..++.|+|+++++.+|++||+|..
T Consensus 205 -------~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~ 252 (255)
T PRK07112 205 -------RYKSYASTL-DDTVAAARPAALAANIEMFADPENLRKIARYVETGKFPW 252 (255)
T ss_pred -------HHHHHHHHh-hhhHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCCCC
Confidence 445566543 446788999999999999999999999999999988764
No 78
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.9e-45 Score=373.72 Aligned_cols=238 Identities=25% Similarity=0.383 Sum_probs=208.9
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccch
Q 004891 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84 (725)
Q Consensus 6 i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (725)
+.++. +++|++||||||+ .|++|.+|+.+|.+++++++.+ ++|+|||||.|++||+|+|+++... ...+..
T Consensus 2 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~------~~~~~~ 73 (243)
T PRK07854 2 IGVTR-DGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY------ADDFPD 73 (243)
T ss_pred ceEEE-eCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh------HHHHHH
Confidence 56777 7899999999995 7999999999999999999865 9999999999999999999985311 111222
Q ss_pred hHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHH
Q 004891 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML 164 (725)
Q Consensus 85 ~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l 164 (725)
...+++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|++
T Consensus 74 ~~~~~~-~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l 152 (243)
T PRK07854 74 ALIEML-HAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLL 152 (243)
T ss_pred HHHHHH-HHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHH
Confidence 334555 6689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhH
Q 004891 165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (725)
Q Consensus 165 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (725)
+|++++|+||+++||||+|++ + +++.++++++++.|+.+++
T Consensus 153 tg~~~~a~eA~~~Glv~~v~~---~-~~a~~~a~~l~~~~~~a~~----------------------------------- 193 (243)
T PRK07854 153 GAEKLTAEQALATGMANRIGT---L-ADAQAWAAEIAGLAPLALQ----------------------------------- 193 (243)
T ss_pred cCCCcCHHHHHHCCCcccccC---H-HHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence 999999999999999999975 3 2789999999998875332
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
.+|+.++.. .+++++++.|.+.+..++.|+|+++++++|++||+|.+
T Consensus 194 -~~K~~l~~~--~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 240 (243)
T PRK07854 194 -HAKRVLNDD--GAIEEAWPAHKELFDKAWASQDAIEAQVARIEKRPPKF 240 (243)
T ss_pred -HHHHHHHcc--CCHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCCCCCC
Confidence 456677654 66899999999999999999999999999999998764
No 79
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=1.2e-45 Score=379.72 Aligned_cols=244 Identities=35% Similarity=0.557 Sum_probs=222.7
Q ss_pred EEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchh
Q 004891 7 TMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (725)
Q Consensus 7 ~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (725)
.++. +++|++|+|||| +.|++|.+++++|.++++.++.|+++|+||++|.+++||+|.|++++... .......+...
T Consensus 1 ~~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~-~~~~~~~~~~~ 78 (245)
T PF00378_consen 1 KYEI-EDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNS-DEEEAREFFRR 78 (245)
T ss_dssp EEEE-ETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHH-HHHHHHHHHHH
T ss_pred CEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhcc-ccccccccchh
Confidence 3677 799999999999 79999999999999999999999999999999999999999999999775 22223344555
Q ss_pred HHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHc
Q 004891 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL 165 (725)
Q Consensus 86 ~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~ 165 (725)
...++ ..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++++++
T Consensus 79 ~~~l~-~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~ 157 (245)
T PF00378_consen 79 FQELL-SRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLT 157 (245)
T ss_dssp HHHHH-HHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccc-ccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeecccccccccc
Confidence 66777 67999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhHH
Q 004891 166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245 (725)
Q Consensus 166 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 245 (725)
|++++|+||+++||||+|+|++++.+.+.+++++++..++.+++
T Consensus 158 g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------------ 201 (245)
T PF00378_consen 158 GEPISAEEALELGLVDEVVPDEELDEEALELAKRLAAKPPSALR------------------------------------ 201 (245)
T ss_dssp TCEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSCHHHHH------------------------------------
T ss_pred cccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCCHHHHH------------------------------------
Confidence 99999999999999999999999999999999999999875433
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhh
Q 004891 246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ 289 (725)
Q Consensus 246 ~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~ 289 (725)
.+|+.++......++++++.|.+.+..++.++|+++++++|++|
T Consensus 202 ~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~eK 245 (245)
T PF00378_consen 202 ATKKALNRALEQSLEEALEFEQDLFAECFKSEDFQEGIAAFLEK 245 (245)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCc
Confidence 56778888888889999999999999999999999999999986
No 80
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=9.1e-45 Score=372.69 Aligned_cols=245 Identities=21% Similarity=0.290 Sum_probs=220.7
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 004891 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (725)
Q Consensus 1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (725)
|.++.+.++. +++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.......
T Consensus 2 ~~~~~~~~~~-~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-- 78 (249)
T PRK07110 2 MMKVVELREV-EEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGK-- 78 (249)
T ss_pred CCCceEEEEe-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchh--
Confidence 6678888888 7899999999994 79999999999999999999999999999999999999999999876432211
Q ss_pred cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (725)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (725)
..+.. ..++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+|
T Consensus 79 ~~~~~--~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a 155 (249)
T PRK07110 79 GTFTE--ANLY-SLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALG 155 (249)
T ss_pred hhHhh--HHHH-HHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHH
Confidence 11111 3455 66899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (725)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (725)
++|+++|++++++||+++||||+|||++++.+++.++++++++.|+.+++
T Consensus 156 ~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 205 (249)
T PRK07110 156 QEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEKPRHSLV------------------------------ 205 (249)
T ss_pred HHHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875333
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 004891 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF 287 (725)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~ 287 (725)
.+|+.++.....+++++++.|.+.+..++.|+|++++++...
T Consensus 206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~~~~ 247 (249)
T PRK07110 206 ------LLKDHLVADRRRRLPEVIEQEVAMHEKTFHQPEVKRRIESLY 247 (249)
T ss_pred ------HHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHhHHHHHHHhc
Confidence 567888888888999999999999999999999999998754
No 81
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.8e-44 Score=383.04 Aligned_cols=276 Identities=31% Similarity=0.525 Sum_probs=246.3
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (725)
Q Consensus 307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (725)
+++||+|||+|.||++||..|+++|++|++||++++.++.+.+.+.+.+......+. . ...+++++.++++ +.+
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~i~~~~~~~~~~ 77 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGI-A----SAGMGRIRMEAGLAAAV 77 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhccc-H----HHHhhceEEeCCHHHHh
Confidence 478999999999999999999999999999999999988877655443332222211 0 1223456666776 458
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCC
Q 004891 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS 465 (725)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~ 465 (725)
++||+||+|||++.+.++.++.++.+.++++++|+|+||+++++++++.+..+.+|+++||++|+..++++|+++++.|+
T Consensus 78 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t~ 157 (311)
T PRK06130 78 SGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTS 157 (311)
T ss_pred ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999988888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCeeEEEc-CCcchhhhhhhHHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---ccHHHHHHhhc
Q 004891 466 AQVILDLMTVGKIIKKVPVVVG-NCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQLLDLAG 539 (725)
Q Consensus 466 ~e~~~~~~~l~~~lGk~~v~v~-d~~Gfi~nRl~~a~~~Ea~~l~~~G-v~~~dID~~~-~~~G~p---~Gpf~~~D~~G 539 (725)
+++++.+.++++.+|+.+++++ +.|||++||++.++++|++.++++| +++++||.++ .++||| +|||+++|.+|
T Consensus 158 ~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~nr~~~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~~~~~~Gp~~~~D~~G 237 (311)
T PRK06130 158 PQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMNG 237 (311)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCccCCCHHHHhhhhc
Confidence 9999999999999999999995 8899999999999999999999997 5999999999 899999 69999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCCCcHHHHHHHHcCCCccccCceeeeccCC
Q 004891 540 YGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKG 587 (725)
Q Consensus 540 ld~~~~~~~~l~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~ 587 (725)
+|++.++++.+++.+++++.|++++++|+++|++|+|+|+|||+|+++
T Consensus 238 l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~~~g~gfy~y~~~ 285 (311)
T PRK06130 238 LDVHLAVASYLYQDLENRTTPSPLLEEKVEAGELGAKSGQGFYAWPPE 285 (311)
T ss_pred cchHHHHHHHHHHhcCCcCCCCHHHHHHHHcCCccccCCCcCccCCCC
Confidence 999999999999999887779999999999999999999999999754
No 82
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7e-45 Score=376.49 Aligned_cols=249 Identities=25% Similarity=0.351 Sum_probs=218.0
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhcc-CCCc-cc
Q 004891 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH-GAGD-VS 80 (725)
Q Consensus 4 ~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~-~~~~-~~ 80 (725)
+.+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.... ...+ ..
T Consensus 6 ~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 84 (260)
T PRK07827 6 TLVRYAV-DGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAV 84 (260)
T ss_pred cceEEEe-eCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHH
Confidence 4577887 7899999999995 79999999999999999999999999999999999999999999875421 1111 11
Q ss_pred ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHH
Q 004891 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (725)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 160 (725)
.+.....+++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++ ..+++
T Consensus 85 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~~a~ 162 (260)
T PRK07827 85 ARAREMTALL-RAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLS-PRAAA 162 (260)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhh-HHHHH
Confidence 1222334555 668999999999999999999999999999999999999999999999999999999999875 56899
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCC
Q 004891 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (725)
Q Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (725)
+|+++|++++|+||+++||||++++ ++.+++.++++++++.++.++
T Consensus 163 ~l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la~~~~~a~-------------------------------- 208 (260)
T PRK07827 163 RYYLTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLRRGSPQGL-------------------------------- 208 (260)
T ss_pred HHHHhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHHhCCHHHH--------------------------------
Confidence 9999999999999999999999974 589999999999999886533
Q ss_pred ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhc
Q 004891 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 293 (725)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~ 293 (725)
..+|+.++......+++.++.|...+..++.++++++++++|++||+|+
T Consensus 209 ----~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~kr~p~ 257 (260)
T PRK07827 209 ----AESKALTTAAVLAGFDRDAEELTEESARLFVSDEAREGMTAFLQKRPPR 257 (260)
T ss_pred ----HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence 3567788888888899999999999999999999999999999998765
No 83
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=7.6e-45 Score=388.07 Aligned_cols=286 Identities=23% Similarity=0.342 Sum_probs=220.6
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCC-cc-
Q 004891 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAG-DV- 79 (725)
Q Consensus 4 ~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~-~~- 79 (725)
+.+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....... ..
T Consensus 3 ~~v~~~~-~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 81 (342)
T PRK05617 3 DEVLAEV-EGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLA 81 (342)
T ss_pred ceEEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchh
Confidence 4678888 7899999999995 7999999999999999999999999999999999 8999999999875422111 00
Q ss_pred c-ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHH
Q 004891 80 S-LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (725)
Q Consensus 80 ~-~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (725)
. .+.....+++ ..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .+
T Consensus 82 ~~~~~~~~~~~~-~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~ 159 (342)
T PRK05617 82 ADRFFREEYRLN-ALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-AL 159 (342)
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-HH
Confidence 0 1112223445 6689999999999999999999999999999999999999999999999999999999999977 78
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHH------------HHHHhcC---c--------hhhhhhhccC
Q 004891 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWA------------LDIAARR---K--------PWIRSLHRTD 215 (725)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a------------~~la~~~---~--------~~~~~~~~~~ 215 (725)
|++|++||++++|+||+++||||+|+|++++.+...+++ ..+.+.+ + ..+......
T Consensus 160 a~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 238 (342)
T PRK05617 160 GTYLALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAG- 238 (342)
T ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCC-
Confidence 999999999999999999999999999998877643322 1111110 0 000100000
Q ss_pred CCCChHHHHHHHH-----HHHHHHHHhCC-CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHH-h
Q 004891 216 KLGSLSEAREVLK-----LARLQAKKTAP-NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF-A 288 (725)
Q Consensus 216 ~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~-~ 288 (725)
.++....+.++ ++....++-.. .-.+...+|++++.+...+++++++.|...+..++.|+|+++++++|+ +
T Consensus 239 --~~~~~~~~~l~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~e 316 (342)
T PRK05617 239 --DTVEDIIAALEADGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSPDFVEGVRAVLID 316 (342)
T ss_pred --CCHHHHHHHHHhccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCchhhccceEEEc
Confidence 11111111111 12233332222 233677889999998888999999999999999999999999999997 7
Q ss_pred h-hhhcCC
Q 004891 289 Q-RATSKV 295 (725)
Q Consensus 289 ~-r~~~~~ 295 (725)
| |+|++.
T Consensus 317 k~r~p~~~ 324 (342)
T PRK05617 317 KDRNPKWS 324 (342)
T ss_pred CCCCCCCC
Confidence 6 666653
No 84
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=3.9e-44 Score=377.22 Aligned_cols=252 Identities=24% Similarity=0.304 Sum_probs=212.2
Q ss_pred cEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-------CCCcCCCCchhhhhcc-
Q 004891 5 RVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-------GRFSGGFDINVFQKVH- 74 (725)
Q Consensus 5 ~i~~~~~-~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-------~~F~aG~Dl~~~~~~~- 74 (725)
+|.++.+ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....
T Consensus 24 ~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~ 103 (302)
T PRK08321 24 DITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGY 103 (302)
T ss_pred eEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccc
Confidence 4666663 5789999999995 7999999999999999999999999999999998 5999999999763210
Q ss_pred ---CCC--cc-c--ccchh-HHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEee-CCceEeCcccccCCCCCc
Q 004891 75 ---GAG--DV-S--LMPDV-SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVIPGF 144 (725)
Q Consensus 75 ---~~~--~~-~--~~~~~-~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~-~~a~~~~pe~~~Gl~p~~ 144 (725)
... .. . ..... ..++. +.+..+||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~ 182 (302)
T PRK08321 104 QYAEGDEADTVDPARAGRLHILEVQ-RLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGG 182 (302)
T ss_pred cccccccccchhhhHHHHHHHHHHH-HHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCc
Confidence 000 00 0 00011 11233 56889999999999999999999999999999999 699999999999999999
Q ss_pred hhhchHhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHH
Q 004891 145 GGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAR 224 (725)
Q Consensus 145 g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~ 224 (725)
+++++|+|++|..+|++|+++|++++|+||+++||||+|||++++.+++.+++++|++.++.+++
T Consensus 183 ~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------- 247 (302)
T PRK08321 183 YGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAMR--------------- 247 (302)
T ss_pred hHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCCHHHHH---------------
Confidence 99999999999999999999999999999999999999999999999999999999998875433
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 225 EVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
.+|++++..... ..+....|.+.+..++.++++++++.+|++||+|.+
T Consensus 248 ---------------------~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr~p~~ 295 (302)
T PRK08321 248 ---------------------MLKYAFNLTDDG-LVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPDW 295 (302)
T ss_pred ---------------------HHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence 445666654443 344455688999999999999999999999998875
No 85
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=4.7e-44 Score=386.35 Aligned_cols=290 Identities=23% Similarity=0.264 Sum_probs=218.4
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc-cc
Q 004891 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VS 80 (725)
Q Consensus 3 ~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~-~~ 80 (725)
++.+.++. +++|++||||||+ +|+||.+|+.+|.++++.++.|++||+|||||.|++||+|+|++++........ ..
T Consensus 10 ~~~v~~~~-~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~ 88 (379)
T PLN02874 10 EEVVLGEE-KGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCL 88 (379)
T ss_pred CCceEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHH
Confidence 35678887 7899999999995 799999999999999999999999999999999999999999999854221111 11
Q ss_pred ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHH
Q 004891 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (725)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 160 (725)
........++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. +++
T Consensus 89 ~~~~~~~~l~-~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~-~a~ 166 (379)
T PLN02874 89 EVVYRMYWLC-YHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGH-LGE 166 (379)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHH-HHH
Confidence 1111112234 56889999999999999999999999999999999999999999999999999999999999985 899
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhh----------------------ccCCCC
Q 004891 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLH----------------------RTDKLG 218 (725)
Q Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~----------------------~~~~~~ 218 (725)
+|++||++++|+||+++||||+|||++++.+.+.++. ++...+...+.... +.-...
T Consensus 167 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~-~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 245 (379)
T PLN02874 167 YLALTGARLNGKEMVACGLATHFVPSEKLPELEKRLL-NLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKD 245 (379)
T ss_pred HHHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCC
Confidence 9999999999999999999999999988876322221 00000000000000 000001
Q ss_pred ChHHHHHHHH---------HHHHHHHHhCCCCh-hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHhHHHHHHH
Q 004891 219 SLSEAREVLK---------LARLQAKKTAPNMP-QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVM---LDTSRGLVHV 285 (725)
Q Consensus 219 ~~~~~~~~~~---------~~~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~---s~~~~~~i~a 285 (725)
++.+....+. .+....++-....| +...+|++++.+...+++++++.|......++. ++|++|++++
T Consensus 246 ~~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~A 325 (379)
T PLN02874 246 TVEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRA 325 (379)
T ss_pred CHHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccce
Confidence 1111111111 12233333333444 567889999999889999999999888888878 9999999999
Q ss_pred HH-hh-hhhcCCC
Q 004891 286 FF-AQ-RATSKVP 296 (725)
Q Consensus 286 F~-~~-r~~~~~~ 296 (725)
|+ +| |+|++.+
T Consensus 326 flidK~r~P~w~~ 338 (379)
T PLN02874 326 LVIDKDNAPKWNP 338 (379)
T ss_pred EEEcCCCCCCCCC
Confidence 97 77 7777544
No 86
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=3.7e-43 Score=390.59 Aligned_cols=254 Identities=16% Similarity=0.134 Sum_probs=220.6
Q ss_pred CCcEEEEEe-cCcEEEEEeCCC-CC-------------CCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcCCCC-CcCCC
Q 004891 3 APRVTMEVG-NDGVAIITLINP-PV-------------NALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGNGGR-FSGGF 65 (725)
Q Consensus 3 ~~~i~~~~~-~~~v~~i~l~~p-~~-------------Nal~~~~~~~l~~~l~~~~-~~~~v~~vVl~g~g~~-F~aG~ 65 (725)
|.+|.+..+ +++|++|||||| +. |++|.+|+.+|.+++++++ +|++||+|||||.|+. ||+|+
T Consensus 255 ~~~~~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~ 334 (546)
T TIGR03222 255 YPTVDVAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAA 334 (546)
T ss_pred eeeEEEEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCc
Confidence 445555443 678999999999 47 9999999999999999998 4599999999999987 99999
Q ss_pred CchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEE-cccccchh-hHHhhhcCEEEe-------eCCceEeCccc
Q 004891 66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV-EGLALGGG-LELAMGCHARIA-------APKTQLGLPEL 136 (725)
Q Consensus 66 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav-~G~a~GgG-~~lalacD~~ia-------~~~a~~~~pe~ 136 (725)
|++.+... ............++++ ..|.++||||||+| ||+|+||| ++|+++||+||| +++++|++||+
T Consensus 335 Dl~~~~~~-~~~~~~~~~~~~~~~~-~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~ 412 (546)
T TIGR03222 335 DALLEAHK-DHWFVRETIGYLRRTL-ARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSEL 412 (546)
T ss_pred Cccccccc-cchhHHHHHHHHHHHH-HHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCcc
Confidence 99843211 1101111112233456 66999999999999 89999999 999999999999 89999999999
Q ss_pred ccCCCCCchhhchHhhhh-CHHHH--HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhc
Q 004891 137 TLGVIPGFGGTQRLPRLV-GLSKA--IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHR 213 (725)
Q Consensus 137 ~~Gl~p~~g~~~~l~r~v-G~~~a--~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~ 213 (725)
++|++|++|++++|++++ |..++ ++|+++|++++|+||+++|||++|+|++++++++.++|+++++.||.+++
T Consensus 413 ~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~---- 488 (546)
T TIGR03222 413 NFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERASFSPDALT---- 488 (546)
T ss_pred ccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHHhcCHHHHH----
Confidence 999999999999999998 99999 55999999999999999999999999999999999999999999886443
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHhHHH---HHHHHHhh
Q 004891 214 TDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRG---LVHVFFAQ 289 (725)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-l~~E~~~~~~~~~s~~~~~---~i~aF~~~ 289 (725)
.+|+.++.....+++.+ +..|.+.+..++.|+|+++ ++++|++|
T Consensus 489 --------------------------------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ek 536 (546)
T TIGR03222 489 --------------------------------GLEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSG 536 (546)
T ss_pred --------------------------------HHHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHccC
Confidence 56778888889999999 9999999999999999999 99999999
Q ss_pred hhhcC
Q 004891 290 RATSK 294 (725)
Q Consensus 290 r~~~~ 294 (725)
|+|..
T Consensus 537 r~p~f 541 (546)
T TIGR03222 537 KKAQF 541 (546)
T ss_pred CCCCC
Confidence 99874
No 87
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=3.1e-43 Score=392.88 Aligned_cols=254 Identities=15% Similarity=0.157 Sum_probs=220.9
Q ss_pred CCcEEEEEe-cCcEEEEEeCCCC-C-------------CCCCHHHHHHHHHHHHHHhc-CCCceEEEEEcCCC-CCcCCC
Q 004891 3 APRVTMEVG-NDGVAIITLINPP-V-------------NALAIPIVAGLKDKFEEATS-RDDVKAIVLTGNGG-RFSGGF 65 (725)
Q Consensus 3 ~~~i~~~~~-~~~v~~i~l~~p~-~-------------Nal~~~~~~~l~~~l~~~~~-~~~v~~vVl~g~g~-~F~aG~ 65 (725)
|.++.++.+ +++|++||||||+ . |++|.+|+.+|.+++++++. |+++|+|||||.|+ +||+|+
T Consensus 259 ~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~ 338 (550)
T PRK08184 259 YRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAA 338 (550)
T ss_pred eEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCC
Confidence 455666653 5789999999994 5 79999999999999999986 79999999999994 999999
Q ss_pred CchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEEc-ccccchh-hHHhhhcCEEEee-------CCceEeCccc
Q 004891 66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE-GLALGGG-LELAMGCHARIAA-------PKTQLGLPEL 136 (725)
Q Consensus 66 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~-G~a~GgG-~~lalacD~~ia~-------~~a~~~~pe~ 136 (725)
|++.+.. .............+.++ ++|.++||||||+|| |+|+||| ++|+|+||+|||+ ++++|++||+
T Consensus 339 Dl~~~~~-~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~ 416 (550)
T PRK08184 339 DATLLAH-KDHWLVRETRGYLRRTL-KRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSAL 416 (550)
T ss_pred Chhhhcc-cchHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccc
Confidence 9874321 11100111122334455 669999999999997 9999999 9999999999999 9999999999
Q ss_pred ccCCCCCchhhchHhhh-hCHHHHHHH--HHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhc
Q 004891 137 TLGVIPGFGGTQRLPRL-VGLSKAIEM--MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHR 213 (725)
Q Consensus 137 ~~Gl~p~~g~~~~l~r~-vG~~~a~~l--~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~ 213 (725)
++|++|++|++++|+|+ +|..+|++| +++|++++|+||+++||||+|||++++++++.++|+++++.||.+++
T Consensus 417 ~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a~~---- 492 (550)
T PRK08184 417 NFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERASLSPDALT---- 492 (550)
T ss_pred cccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHHhCCHHHHH----
Confidence 99999999999999998 699999997 58999999999999999999999999999999999999999886443
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHhHHH---HHHHHHhh
Q 004891 214 TDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRG---LVHVFFAQ 289 (725)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-l~~E~~~~~~~~~s~~~~~---~i~aF~~~ 289 (725)
.+|++++.+...+++++ +..|.+.+..+++|+|+++ ++++|++|
T Consensus 493 --------------------------------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ek 540 (550)
T PRK08184 493 --------------------------------GMEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTG 540 (550)
T ss_pred --------------------------------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhccC
Confidence 56788999999999999 9999999999999999999 99999999
Q ss_pred hhhcC
Q 004891 290 RATSK 294 (725)
Q Consensus 290 r~~~~ 294 (725)
|+|..
T Consensus 541 r~~~f 545 (550)
T PRK08184 541 QKAQF 545 (550)
T ss_pred CCCCC
Confidence 99874
No 88
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.4e-42 Score=349.50 Aligned_cols=203 Identities=30% Similarity=0.471 Sum_probs=181.2
Q ss_pred CcEEEEEe----cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 004891 4 PRVTMEVG----NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (725)
Q Consensus 4 ~~i~~~~~----~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (725)
+.|.++.. +++|++||||||+.|+||.+|+.+|.++++++++|+++|+|||||.|++||+|+|++++..... .+.
T Consensus 3 ~~~~~~~~~~~~~~~i~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~-~~~ 81 (222)
T PRK05869 3 EFVNVVVSDGSQDAGLATLLLSRPPTNALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSA-QEA 81 (222)
T ss_pred cchhhhcccCcccCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccCh-hhH
Confidence 45666653 4889999999998899999999999999999999999999999999999999999999864321 111
Q ss_pred cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (725)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (725)
.......++++ +++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..++
T Consensus 82 ~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a 160 (222)
T PRK05869 82 DTAARVRQQAV-DAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRA 160 (222)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHH
Confidence 11222334566 66999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhh
Q 004891 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWI 208 (725)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~ 208 (725)
++++++|++++|+||+++||||+|+|++++.+++.++++++++.++.++
T Consensus 161 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~ 209 (222)
T PRK05869 161 KELVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWARRFLDGPPHAL 209 (222)
T ss_pred HHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999999999999999999999999887544
No 89
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=2.4e-42 Score=371.64 Aligned_cols=243 Identities=21% Similarity=0.319 Sum_probs=204.7
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc---
Q 004891 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV--- 79 (725)
Q Consensus 4 ~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~--- 79 (725)
+.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||+|.|++||+|+|++++.........
T Consensus 37 ~~V~~e~-~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~ 115 (401)
T PLN02157 37 YQVLVEG-SGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAI 115 (401)
T ss_pred CceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence 4578888 7899999999995 7999999999999999999999999999999999999999999998642211111
Q ss_pred cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (725)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (725)
..+......++ ..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|. .+
T Consensus 116 ~~~~~~~~~l~-~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~-~a 193 (401)
T PLN02157 116 REFFSSLYSFI-YLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGR-LG 193 (401)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhH-HH
Confidence 11111111233 56899999999999999999999999999999999999999999999999999999999999995 89
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (725)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (725)
++|++||++++|+||+++||||++||++++ +++.+++.+++..++..+
T Consensus 194 ~~L~LTG~~i~A~eA~~~GLv~~vVp~~~l-~~~~~~~~~i~~~~p~av------------------------------- 241 (401)
T PLN02157 194 EYLGLTGLKLSGAEMLACGLATHYIRSEEI-PVMEEQLKKLLTDDPSVV------------------------------- 241 (401)
T ss_pred HHHHHcCCcCCHHHHHHcCCceEEeCHhHH-HHHHHHHHHHHcCCHHHH-------------------------------
Confidence 999999999999999999999999999998 677799999887665322
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 004891 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF 287 (725)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~ 287 (725)
..+|+.+... ..+....+..|...+..++.+++.++.+.+|.
T Consensus 242 -----~~~k~~~~~~-~~~~~~~l~~~~~~i~~~f~~~d~~ei~~al~ 283 (401)
T PLN02157 242 -----ESCLEKCAEV-AHPEKTGVIRRIDLLEKCFSHDTVEEIIDSLE 283 (401)
T ss_pred -----HHHHHHHhcc-cCCcchhHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 2344455443 23456777888899999999999999999993
No 90
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=1.3e-43 Score=330.51 Aligned_cols=246 Identities=29% Similarity=0.464 Sum_probs=220.4
Q ss_pred cCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc-CCCCCcCCCCchhhhhccCCCcccccchhHHHH
Q 004891 12 NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTG-NGGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL 89 (725)
Q Consensus 12 ~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g-~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (725)
+.||.+|-+||| +.|+|+..|+++|.++++++..|+.+|+|+|++ .+..||+|+||+|-..++.. +...+...+..+
T Consensus 38 ~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~-Ev~~fV~~lR~~ 116 (291)
T KOG1679|consen 38 DEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPS-EVTRFVNGLRGL 116 (291)
T ss_pred CCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHH-HHHHHHHHHHHH
Confidence 679999999999 689999999999999999999999999999975 46789999999998876543 344555556666
Q ss_pred HHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCC
Q 004891 90 VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169 (725)
Q Consensus 90 ~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~ 169 (725)
+ ..|.++|.||||+|.|.|+|||+|++|+||+|+|+++++||++|.+++++|+.|||+||||.+|...|+++++|++.+
T Consensus 117 ~-~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~alaKELIftarvl 195 (291)
T KOG1679|consen 117 F-NDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVALAKELIFTARVL 195 (291)
T ss_pred H-HHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHHHHHhHhhhheec
Confidence 7 669999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHcCCcceecCcc----hHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhHH
Q 004891 170 TSEEGWKLGLIDAVVTSE----ELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245 (725)
Q Consensus 170 ~a~eA~~~Glv~~vv~~~----~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 245 (725)
++.||...||||+||... .....+.++|+++.-+.|. |+.
T Consensus 196 ~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~gPi------------------------------------avr 239 (291)
T KOG1679|consen 196 NGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQGPI------------------------------------AVR 239 (291)
T ss_pred cchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCCch------------------------------------hhh
Confidence 999999999999999765 5666677788877655553 233
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCC
Q 004891 246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (725)
Q Consensus 246 ~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~ 295 (725)
..|.+|+.+.+.++..++..|..++++...+.|-.+++.+|.+||+|..+
T Consensus 240 ~aKlAIn~G~evdiasgl~iEe~CYaq~i~t~drLeglaaf~ekr~p~y~ 289 (291)
T KOG1679|consen 240 LAKLAINLGMEVDIASGLSIEEMCYAQIIPTKDRLEGLAAFKEKRKPEYK 289 (291)
T ss_pred HHHHHhccCceecccccccHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcC
Confidence 55778999999999999999999999999999999999999999998743
No 91
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.4e-42 Score=360.11 Aligned_cols=238 Identities=26% Similarity=0.321 Sum_probs=203.7
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC---
Q 004891 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA--- 76 (725)
Q Consensus 1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~--- 76 (725)
|+++.+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++......
T Consensus 1 ~~~~~v~~~~-~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~ 79 (288)
T PRK08290 1 MEYEYVRYEV-AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPG 79 (288)
T ss_pred CCCceEEEEe-eCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccc
Confidence 8999999998 8899999999995 7999999999999999999999999999999999999999999987421110
Q ss_pred --------------Cccc-cc---chhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCccccc
Q 004891 77 --------------GDVS-LM---PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL 138 (725)
Q Consensus 77 --------------~~~~-~~---~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~ 138 (725)
.... .+ ......++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~l 158 (288)
T PRK08290 80 PDQHPTLWWDGATKPGVEQRYAREWEVYLGMC-RRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRM 158 (288)
T ss_pred cccccccccccccccchhhHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCccccc
Confidence 0000 01 01122344 56889999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCC
Q 004891 139 GVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLG 218 (725)
Q Consensus 139 Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~ 218 (725)
|+ |+ .+++++++++|+.++++|++||++++|+||+++||||+|||++++.+++.++++++++.|+..++
T Consensus 159 Gl-~~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------- 227 (288)
T PRK08290 159 GI-PG-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMPPFGLR--------- 227 (288)
T ss_pred Cc-Cc-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHH---------
Confidence 98 54 45777899999999999999999999999999999999999999999999999999998875433
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHh-CCHh
Q 004891 219 SLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVH-GGYSGVLKEAKVFKELV-MLDT 278 (725)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~l~~E~~~~~~~~-~s~~ 278 (725)
.+|+.++..... ++++++..|.......+ .+++
T Consensus 228 ---------------------------~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (288)
T PRK08290 228 ---------------------------LTKRAVNQTLDAQGFRAALDAVFDLHQLGHAHNAE 262 (288)
T ss_pred ---------------------------HHHHHHHHHHhhccHHHHHHHHHHHHHHccccchh
Confidence 456777776664 68999999999888877 6666
No 92
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=7.9e-41 Score=359.14 Aligned_cols=291 Identities=21% Similarity=0.292 Sum_probs=226.8
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccc
Q 004891 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (725)
Q Consensus 2 ~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (725)
+.+.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++..........
T Consensus 7 ~~~~v~~~~-~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~ 85 (381)
T PLN02988 7 SQSQVLVEE-KSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWR 85 (381)
T ss_pred cCCceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchh
Confidence 356788887 7899999999996 79999999999999999999999999999999999999999999985321111110
Q ss_pred ---ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHH
Q 004891 81 ---LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (725)
Q Consensus 81 ---~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~ 157 (725)
.+......+. ..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|.
T Consensus 86 ~~~~~f~~~~~l~-~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~- 163 (381)
T PLN02988 86 LGANFFSDEYMLN-YVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF- 163 (381)
T ss_pred HHHHHHHHHHHHH-HHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH-
Confidence 1111111223 46889999999999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhc---cCC------------------
Q 004891 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHR---TDK------------------ 216 (725)
Q Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~---~~~------------------ 216 (725)
.+++|++||++++|++|+++||||++||++++.+.+.+++ +++..++.......+ ...
T Consensus 164 ~~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f 242 (381)
T PLN02988 164 FGEYVGLTGARLDGAEMLACGLATHFVPSTRLTALEADLC-RIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCF 242 (381)
T ss_pred HHHHHHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHH-HhhccCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999888888 666554433322211 000
Q ss_pred -CCChHHHHHHHH---------HHHHHHHHhCCCChhH-HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHhHHHH
Q 004891 217 -LGSLSEAREVLK---------LARLQAKKTAPNMPQH-QACLDVIEEGIVHGGYSGVLKEAKVFKELVM---LDTSRGL 282 (725)
Q Consensus 217 -~~~~~~~~~~~~---------~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~---s~~~~~~ 282 (725)
..++....+.+. .++...+.-....|.. ..+.+.++.+...++.+.++.|.+.-..++. ++||.||
T Consensus 243 ~~~~~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EG 322 (381)
T PLN02988 243 SRRTVEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEG 322 (381)
T ss_pred CCCCHHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHh
Confidence 001121211111 1222223333456644 6778889999999999999999999999998 6999999
Q ss_pred HHHHHhh--hhhcCCC
Q 004891 283 VHVFFAQ--RATSKVP 296 (725)
Q Consensus 283 i~aF~~~--r~~~~~~ 296 (725)
|++-+-. +.|++.|
T Consensus 323 VRA~LiDKd~~P~W~p 338 (381)
T PLN02988 323 CRAILVDKDKNPKWEP 338 (381)
T ss_pred HHHHhcCCCCCCCCCC
Confidence 9998763 3455444
No 93
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.6e-41 Score=343.07 Aligned_cols=227 Identities=26% Similarity=0.338 Sum_probs=194.3
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccc
Q 004891 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (725)
Q Consensus 1 M~~~~i~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (725)
|+ +.+.++. +++|++||||||+.|++|.+|+++|.++++.++ +++++||+||.|++||+|+|++++... .....
T Consensus 1 ~~-~~i~~~~-~~~v~~itln~~~~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~--~~~~~ 74 (229)
T PRK06213 1 MS-ELVSYTL-EDGVATITLDDGKVNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSG--AQAAI 74 (229)
T ss_pred Cc-ceEEEEe-cCCEEEEEeCCCCCCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcc--hHhHH
Confidence 54 4688888 789999999999899999999999999999988 467999999999999999999988642 11112
Q ss_pred ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCC-ceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (725)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~-a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (725)
.+.....+++ +++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|+++++.++++++|...+
T Consensus 75 ~~~~~~~~l~-~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a 153 (229)
T PRK06213 75 ALLTAGSTLA-RRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAF 153 (229)
T ss_pred HHHHHHHHHH-HHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHH
Confidence 2223344566 6689999999999999999999999999999999999 9999999999999888888899999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (725)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (725)
++|+++|++++|+||+++||||+|+|++++.+++.++++++++.++..++
T Consensus 154 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 203 (229)
T PRK06213 154 QRAVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGLNMGAHA------------------------------ 203 (229)
T ss_pred HHHHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875433
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 004891 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVF 270 (725)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~ 270 (725)
.+|+.++......++++++.|...|
T Consensus 204 ------~~K~~l~~~~~~~l~~~~~~~~~~~ 228 (229)
T PRK06213 204 ------ATKLKVRAAALEAIRAAIEGDAAEF 228 (229)
T ss_pred ------HHHHHHHHHHHHHHHhchhhhhhhc
Confidence 4456666655556667666666543
No 94
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1e-40 Score=346.16 Aligned_cols=246 Identities=22% Similarity=0.256 Sum_probs=197.0
Q ss_pred CcEEEEEe-cCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEEcC-CCCCcCCCCchhhhhccC
Q 004891 4 PRVTMEVG-NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATS-----RDDVKAIVLTGN-GGRFSGGFDINVFQKVHG 75 (725)
Q Consensus 4 ~~i~~~~~-~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~-----~~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~ 75 (725)
.+++++.+ +++|++|||| | +.|+||.+|+++|.+++++++. |+++|+|||||. |++||+|+|++++.....
T Consensus 15 ~~~~i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~ 93 (287)
T PRK08788 15 SQLRVYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIR 93 (287)
T ss_pred CceEEEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhcc
Confidence 44544443 6889999996 6 6899999999999999999998 899999999999 799999999998753211
Q ss_pred CCcccccchh---HHHHHHHHHh---hCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhch
Q 004891 76 AGDVSLMPDV---SVELVVNLIE---DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQR 149 (725)
Q Consensus 76 ~~~~~~~~~~---~~~~~~~~l~---~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~ 149 (725)
..+...+... ..+.+ ..+. .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++
T Consensus 94 ~~~~~~~~~~~~~~~~~~-~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~ 172 (287)
T PRK08788 94 AGDRDALLAYARACVDGV-HAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSF 172 (287)
T ss_pred ccchHHHHHHHHHHHHHH-HHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHH
Confidence 1111111111 11222 2233 799999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHH
Q 004891 150 LPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKL 229 (725)
Q Consensus 150 l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (725)
|++++|..++++|++||+.++|+||+++||||++||++++.+++.+++++++.. +....
T Consensus 173 l~~~vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~~-~~~~~-------------------- 231 (287)
T PRK08788 173 LARRVGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKRK-LNGWR-------------------- 231 (287)
T ss_pred HHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhcC-ccHHH--------------------
Confidence 999999999999999999999999999999999999999999999999999976 32111
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHh-HHHHHHHHHh
Q 004891 230 ARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDT-SRGLVHVFFA 288 (725)
Q Consensus 230 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~-~~~~i~aF~~ 288 (725)
.+|+..+.....++++.++.|...+..++++.+ .++-+..|..
T Consensus 232 ----------------a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (287)
T PRK08788 232 ----------------AMLRARRRVNPLSLEELMDITEIWVDAALQLEEKDLRTMERLVR 275 (287)
T ss_pred ----------------HHHHHHHhhccCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 223333344446788888988877776666554 5566666653
No 95
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-40 Score=350.78 Aligned_cols=203 Identities=26% Similarity=0.344 Sum_probs=176.0
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC---
Q 004891 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG--- 77 (725)
Q Consensus 2 ~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~--- 77 (725)
++++|.++. +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++.......
T Consensus 8 ~~~~v~~e~-~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~ 86 (302)
T PRK08272 8 NLKTMTYEV-TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGG 86 (302)
T ss_pred CCCeEEEEe-ECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccc
Confidence 467889998 7899999999994 79999999999999999999999999999999999999999999986422110
Q ss_pred c----------------cc-----ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCccc
Q 004891 78 D----------------VS-----LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL 136 (725)
Q Consensus 78 ~----------------~~-----~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~ 136 (725)
. .. .......+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~ 165 (302)
T PRK08272 87 GAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGF-MSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPT 165 (302)
T ss_pred cccccccccccccccccccchhhHHHHHHHHHHH-HHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcch
Confidence 0 00 0012223445 568899999999999999999999999999999999999999999
Q ss_pred ccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhh
Q 004891 137 TLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR 209 (725)
Q Consensus 137 ~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~ 209 (725)
++|.+|+. ..+++++|..+|++|++||++++|+||+++||||+|||++++.+++.++|++|++.|+..++
T Consensus 166 ~~gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~~~~a~~ 235 (302)
T PRK08272 166 RVWGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAVPVNQLA 235 (302)
T ss_pred hcccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 98666643 35788999999999999999999999999999999999999999999999999999876544
No 96
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=5e-39 Score=345.47 Aligned_cols=281 Identities=22% Similarity=0.261 Sum_probs=218.0
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC---cc
Q 004891 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG---DV 79 (725)
Q Consensus 4 ~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~---~~ 79 (725)
+.|.++. .+++++||||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++....... ..
T Consensus 42 ~~v~~e~-~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~ 120 (407)
T PLN02851 42 DQVLVEG-RAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEEC 120 (407)
T ss_pred CCeEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence 4577888 7899999999995 79999999999999999999999999999999999999999999986422111 11
Q ss_pred cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (725)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (725)
..+......+. ..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|. .+
T Consensus 121 ~~~f~~~~~l~-~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~-~g 198 (407)
T PLN02851 121 KLFFENLYKFV-YLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGY-LG 198 (407)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCH-HH
Confidence 11222222344 56889999999999999999999999999999999999999999999999999999999999997 49
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhh---ccC-------------------CC
Q 004891 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLH---RTD-------------------KL 217 (725)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~---~~~-------------------~~ 217 (725)
++|++||++++|++|+++||+|++||++++ +.+.+.+.++...++....... ... ..
T Consensus 199 ~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l-~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~ 277 (407)
T PLN02851 199 EYLALTGQKLNGVEMIACGLATHYCLNARL-PLIEERLGKLLTDDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGH 277 (407)
T ss_pred HHHHHhCCcCCHHHHHHCCCceeecCHhhH-HHHHHHHHhhccCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCC
Confidence 999999999999999999999999999887 5566666555443322221110 000 00
Q ss_pred CChHHHHHHHH---------HHHHHHHHhCCCChh-HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh---CCHhHHHHHH
Q 004891 218 GSLSEAREVLK---------LARLQAKKTAPNMPQ-HQACLDVIEEGIVHGGYSGVLKEAKVFKELV---MLDTSRGLVH 284 (725)
Q Consensus 218 ~~~~~~~~~~~---------~~~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~---~s~~~~~~i~ 284 (725)
.++....+.+. .++...+.-....|. ...+.+.++.+...++++.++.|...-..++ .++||.|||+
T Consensus 278 ~sv~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVR 357 (407)
T PLN02851 278 DTVEEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVR 357 (407)
T ss_pred CCHHHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHH
Confidence 12222222111 122222333445664 4677888999999999999999999888887 4899999999
Q ss_pred HHHh
Q 004891 285 VFFA 288 (725)
Q Consensus 285 aF~~ 288 (725)
+-+-
T Consensus 358 A~LI 361 (407)
T PLN02851 358 ARLV 361 (407)
T ss_pred HHhc
Confidence 9876
No 97
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=4.6e-39 Score=335.02 Aligned_cols=191 Identities=25% Similarity=0.354 Sum_probs=167.7
Q ss_pred EEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccC--CCcccccchhHHHHH
Q 004891 15 VAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHG--AGDVSLMPDVSVELV 90 (725)
Q Consensus 15 v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~--~~~~~~~~~~~~~~~ 90 (725)
+++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++..... ......+.....+++
T Consensus 38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~ 117 (360)
T TIGR03200 38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMV 117 (360)
T ss_pred EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHH
Confidence 4569999995 7999999999999999999999999999999999 69999999998865321 111112222234455
Q ss_pred HHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCC
Q 004891 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT 170 (725)
Q Consensus 91 ~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~ 170 (725)
+.|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|+++|++++
T Consensus 118 -~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~s 196 (360)
T TIGR03200 118 -SAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWS 196 (360)
T ss_pred -HHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCc
Confidence 6689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCcchH------------HHHHHHHHHHHHhcCch
Q 004891 171 SEEGWKLGLIDAVVTSEEL------------LKVSRLWALDIAARRKP 206 (725)
Q Consensus 171 a~eA~~~Glv~~vv~~~~l------------~~~a~~~a~~la~~~~~ 206 (725)
|+||+++||||+|||+.++ ++.+.++++.+...++.
T Consensus 197 A~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 244 (360)
T TIGR03200 197 AHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGEFKA 244 (360)
T ss_pred HHHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCCCcc
Confidence 9999999999999999888 77888888877776654
No 98
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=7.7e-38 Score=332.19 Aligned_cols=262 Identities=25% Similarity=0.348 Sum_probs=244.7
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (725)
|+||+|||+|.||++||..|+++|++|++||++++.++.+.++++..++.+.+.|.++.++....++++..++++ +.++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 578999999999999999999999999999999999999999999999999999999888888888888888888 5679
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCCH
Q 004891 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (725)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~ 466 (725)
+||+||+|+|++.++++.+++++.+.++++++++|+||++++.++++.+.++.++++.||++|++.++++|+++++.|++
T Consensus 82 ~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~~t~~ 161 (308)
T PRK06129 82 DADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAP 161 (308)
T ss_pred CCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEE-cCCcchhhhhhhHHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---ccHHHHHHhh--
Q 004891 467 QVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQLLDLA-- 538 (725)
Q Consensus 467 e~~~~~~~l~~~lGk~~v~v-~d~~Gfi~nRl~~a~~~Ea~~l~~~G-v~~~dID~~~-~~~G~p---~Gpf~~~D~~-- 538 (725)
++++.++++++.+|+.++++ ++.+||++||++.++++||+.++++| +++++||.++ .++|++ +|||.++|..
T Consensus 162 ~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~ 241 (308)
T PRK06129 162 ATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNAP 241 (308)
T ss_pred HHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhcccc
Confidence 99999999999999999999 58999999999999999999999997 5999999999 889998 7999999987
Q ss_pred -chHHHHHHHHHHHhhCCCCCC-CcHHHHHHHH
Q 004891 539 -GYGVAAATSKEFDKAFPDRSF-QSPLVDLLLK 569 (725)
Q Consensus 539 -Gld~~~~~~~~l~~~~~~~~~-~~~~l~~~v~ 569 (725)
|++........++.++++..+ |+|++.+|++
T Consensus 242 ~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~ 274 (308)
T PRK06129 242 GGVADYAQRYGPMYRRMAAERGQPVPWDGELVA 274 (308)
T ss_pred ccHHHHHHHHHHHHHhhccccCCCchhhHHHHH
Confidence 899999999999988887655 8888888887
No 99
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=2e-39 Score=305.60 Aligned_cols=255 Identities=24% Similarity=0.340 Sum_probs=220.1
Q ss_pred CCcEEEE--EecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhcc----C
Q 004891 3 APRVTME--VGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH----G 75 (725)
Q Consensus 3 ~~~i~~~--~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~----~ 75 (725)
|+.+.+. ..+..|.++.|||| +.|+||..|+.|+.++++.+..||++|+|||+|+|++||+|+|+..+.... .
T Consensus 18 ~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~~ 97 (292)
T KOG1681|consen 18 YKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQPE 97 (292)
T ss_pred cceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhccccc
Confidence 4444444 22567999999999 689999999999999999999999999999999999999999987765321 1
Q ss_pred CCc-------ccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhc
Q 004891 76 AGD-------VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ 148 (725)
Q Consensus 76 ~~~-------~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~ 148 (725)
..+ ..+++..++..+ ..|.+||||||++|||+|+|+|+.|.-|||+|+|+++|.|..-|+.+|+..+.|...
T Consensus 98 ~dd~aR~g~~lrr~Ik~~Q~~~-t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~ 176 (292)
T KOG1681|consen 98 GDDVARKGRSLRRIIKRYQDTF-TAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLN 176 (292)
T ss_pred cchHhhhhHHHHHHHHHHHHHH-HHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHh
Confidence 111 223334455666 569999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhC-HHHHHHHHHcCCCCCHHHHHHcCCcceecC-cchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHH
Q 004891 149 RLPRLVG-LSKAIEMMLLSKSITSEEGWKLGLIDAVVT-SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREV 226 (725)
Q Consensus 149 ~l~r~vG-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~-~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (725)
|||..|| ...++++.+|++.++|.||++.|||.+|+| .+++++.+..+|+.|+.++|.+.+
T Consensus 177 RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KSpvaVq----------------- 239 (292)
T KOG1681|consen 177 RLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASKSPVAVQ----------------- 239 (292)
T ss_pred hhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCCceeee-----------------
Confidence 9999999 899999999999999999999999999996 578999999999999999985433
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 227 LKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 227 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
-+|+.+..+.+++.++.|..-.-+-...+.|+|..+.+.+-++|+++..
T Consensus 240 -------------------gTK~~L~ysrehsv~~sLnyvatwNms~L~s~Dl~~av~a~m~k~k~~t 288 (292)
T KOG1681|consen 240 -------------------GTKENLLYSREHSVEESLNYVATWNMSMLLSDDLVKAVMAQMEKLKTVT 288 (292)
T ss_pred -------------------chHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 4577888888899999998888777788889999999999888776653
No 100
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=1.7e-38 Score=323.54 Aligned_cols=198 Identities=24% Similarity=0.299 Sum_probs=169.1
Q ss_pred EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEEcCCCCCcCCCCchhhhhccCCCc-ccccc
Q 004891 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVK-AIVLTGNGGRFSGGFDINVFQKVHGAGD-VSLMP 83 (725)
Q Consensus 6 i~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~-~vVl~g~g~~F~aG~Dl~~~~~~~~~~~-~~~~~ 83 (725)
++++. +++|++|+||||+.|+||.+|+++|.+++++++.|++++ +||++|.|++||+|+|++++........ ...+.
T Consensus 2 ~~~~~-~~~v~~i~Lnrp~~Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~ 80 (239)
T PLN02267 2 CTLEK-RGNLFILTLTGDGEHRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMV 80 (239)
T ss_pred ceeEe-cCCEEEEEeCCCCcCcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHH
Confidence 46777 789999999999779999999999999999999998875 7777999999999999998753211111 11122
Q ss_pred hhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEee-CCceEeCcccccCCCCCchhhchHhhhhCHHHH-HH
Q 004891 84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA-IE 161 (725)
Q Consensus 84 ~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~-~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a-~~ 161 (725)
....+++ ..|.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|+++++.+|++++|..++ ++
T Consensus 81 ~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~~ 159 (239)
T PLN02267 81 AKLRPLV-ADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARRD 159 (239)
T ss_pred HHHHHHH-HHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHHH
Confidence 3344556 56999999999999999999999999999999998 568999999999997334458899999999999 69
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCc-chHHHHHHHHHHHHHhcCc
Q 004891 162 MMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRK 205 (725)
Q Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~ 205 (725)
|+++|++++|+||+++||||+|+|+ +++.+++.++|+++++.++
T Consensus 160 llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~~~ 204 (239)
T PLN02267 160 VLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAARKW 204 (239)
T ss_pred HHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999985 6899999999999998754
No 101
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=2.1e-37 Score=300.57 Aligned_cols=253 Identities=22% Similarity=0.275 Sum_probs=224.6
Q ss_pred CCCCcEEEEEecCcEEEEEeC-CCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc
Q 004891 1 MAAPRVTMEVGNDGVAIITLI-NPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (725)
Q Consensus 1 M~~~~i~~~~~~~~v~~i~l~-~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (725)
|.+..+.++. ++|+..|.+| ||+ .|+++.+++.++..+|+.+.+|+++..+|++|.|++||+|.|++.+......+.
T Consensus 4 ~~~~~~vv~~-~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~ 82 (266)
T KOG0016|consen 4 MRYREIVVTR-ENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDA 82 (266)
T ss_pred ccccceEEEe-cCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCcc
Confidence 5677888888 8999999999 995 799999999999999999999999999999999999999999998876433221
Q ss_pred ---ccccchhHH--HHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhh
Q 004891 79 ---VSLMPDVSV--ELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL 153 (725)
Q Consensus 79 ---~~~~~~~~~--~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~ 153 (725)
......... ..+.+.+.++|||+||.|||+|+|.|..+...||+++|+|+++|..|++++|++|++|+++.+|++
T Consensus 83 ~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~i 162 (266)
T KOG0016|consen 83 NEESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKI 162 (266)
T ss_pred cccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHh
Confidence 111111111 123477899999999999999999999999999999999999999999999999999999999999
Q ss_pred hCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHH
Q 004891 154 VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQ 233 (725)
Q Consensus 154 vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (725)
+|...|.||++.|++++|+||.+.|||+++++.+++.+.+..-++++++.+|..++
T Consensus 163 mG~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l~p~sl~------------------------ 218 (266)
T KOG0016|consen 163 MGSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKIKQYSKLSPESLL------------------------ 218 (266)
T ss_pred hchhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHHHHHhcCCHHHHH------------------------
Confidence 99999999999999999999999999999999999999999999999998876544
Q ss_pred HHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhh
Q 004891 234 AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQR 290 (725)
Q Consensus 234 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r 290 (725)
.+|++++......+..+.+.|...+...|.|+|+.+.+.+|+.+.
T Consensus 219 ------------~~K~L~rs~~k~~l~~an~~E~~~l~~~W~s~e~~~~~~~~~~~~ 263 (266)
T KOG0016|consen 219 ------------GMKKLLRSNIKEELIKANEEECNVLLKQWVSAECLARFKQYLSKK 263 (266)
T ss_pred ------------HHHHHHHHHHHHHHHHhhHHHHHHHHhhccChHHHHHHHHHhccc
Confidence 357788888888889999999999999999999999999998754
No 102
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=100.00 E-value=3.3e-38 Score=295.10 Aligned_cols=252 Identities=28% Similarity=0.383 Sum_probs=204.3
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC--C-CCCcCCCCchhhhhc---cC
Q 004891 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--G-GRFSGGFDINVFQKV---HG 75 (725)
Q Consensus 3 ~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~--g-~~F~aG~Dl~~~~~~---~~ 75 (725)
|..|.++...++|+.||||||. +|++.+..+.||.+++..++.|++|.+|||||. | +.||+|+|-+--... ..
T Consensus 17 y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~ 96 (282)
T COG0447 17 YEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVD 96 (282)
T ss_pred cceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccC
Confidence 5678899854899999999995 899999999999999999999999999999985 4 689999998654331 11
Q ss_pred CCcccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhC
Q 004891 76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (725)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG 155 (725)
+....++. ..+ +.+.|+.+||||||.|+|+|+|||-.|-+-||+.||+++|+|+....++|-+-++.|+..|.|.||
T Consensus 97 d~~~~rLn--vLd-lQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VG 173 (282)
T COG0447 97 DDGIPRLN--VLD-LQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVG 173 (282)
T ss_pred CccCcccc--hhh-HHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhh
Confidence 11122211 112 236688999999999999999999999999999999999999999999999988888899999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHH
Q 004891 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK 235 (725)
Q Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (725)
..+|+|+.+.++.++|+||+++|+||.|||.++|++++.+|++++.++||.++|-
T Consensus 174 qKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kSP~AlR~------------------------- 228 (282)
T COG0447 174 QKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAKSPTALRM------------------------- 228 (282)
T ss_pred hhhhHHhhhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHHHHhcChHHHHH-------------------------
Confidence 9999999999999999999999999999999999999999999999999865541
Q ss_pred HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
++........++.-.-+....+-.....++|++|+..+|++||+|..
T Consensus 229 ------------LK~Afnad~DGlaG~q~~ag~at~L~YmTdEa~EGr~AF~eKR~Pdf 275 (282)
T COG0447 229 ------------LKAAFNADCDGLAGLQELAGNATLLYYMTDEAQEGRDAFLEKRKPDF 275 (282)
T ss_pred ------------HHHHhcCCCchhhHHHHhcccceEEEEechhhhhhHHHHhhccCCCh
Confidence 11111111122222112222333445779999999999999999864
No 103
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=100.00 E-value=4.1e-36 Score=292.28 Aligned_cols=180 Identities=40% Similarity=0.620 Sum_probs=161.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCCC
Q 004891 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (725)
Q Consensus 310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD 389 (725)
||+|||+|.||.+||..++.+|++|++||++++.++.+.+++++.++..++++.+++++....+++++++++++.+.+||
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~ad 80 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVDAD 80 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCTES
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhhhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998877999
Q ss_pred EEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCCHHHH
Q 004891 390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVI 469 (725)
Q Consensus 390 lVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~ 469 (725)
+||||+||++++|+++|++|++.+++++||+||||++++++++..+.+|+||+|+|||+|++.+|+|||++++.|+++++
T Consensus 81 lViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~ 160 (180)
T PF02737_consen 81 LVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKTSPETV 160 (180)
T ss_dssp EEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-HHHH
T ss_pred eehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeeEEEcCC
Q 004891 470 LDLMTVGKIIKKVPVVVGNC 489 (725)
Q Consensus 470 ~~~~~l~~~lGk~~v~v~d~ 489 (725)
+++..+++.+||.|++++|+
T Consensus 161 ~~~~~~~~~~gk~pv~v~D~ 180 (180)
T PF02737_consen 161 DRVRALLRSLGKTPVVVKDT 180 (180)
T ss_dssp HHHHHHHHHTT-EEEEEES-
T ss_pred HHHHHHHHHCCCEEEEecCC
Confidence 99999999999999999874
No 104
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=8.9e-36 Score=275.84 Aligned_cols=245 Identities=23% Similarity=0.342 Sum_probs=212.5
Q ss_pred cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHH
Q 004891 12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (725)
Q Consensus 12 ~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (725)
+++|-.|+|++|+ +|+|+.+|+.+|.+.+....++.++|+|||+..|+.||+|.||+|+...+..+-.........+.+
T Consensus 39 ~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haevFqtc~dvm 118 (287)
T KOG1682|consen 39 HNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEVFQTCTDVM 118 (287)
T ss_pred ccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCccchHHHHHHHHHHHHH
Confidence 5899999999995 899999999999999999888889999999999999999999999987544333344445555677
Q ss_pred HHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCC
Q 004891 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT 170 (725)
Q Consensus 91 ~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~ 170 (725)
+.|+++|.||||-|||.|..+||.|...||++||+++++|..|.+++|++-...|. -|.|.+++..+.+|++||.+|+
T Consensus 119 -n~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGv-AlaRavpRkva~~ML~Tg~Pi~ 196 (287)
T KOG1682|consen 119 -NDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGV-ALARAVPRKVAAYMLMTGLPIT 196 (287)
T ss_pred -HHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcch-hHhhhcchhHHHHHHHhCCCCc
Confidence 56999999999999999999999999999999999999999999999998655543 4899999999999999999999
Q ss_pred HHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004891 171 SEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDV 250 (725)
Q Consensus 171 a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 250 (725)
++||+..|||.+|||.+++..++.+++.+|...+...+. .-|+.
T Consensus 197 ~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~srav~s------------------------------------lgk~f 240 (287)
T KOG1682|consen 197 GEEALISGLVSKVVPAEELDKEIEEITNAIKAKSRAVIS------------------------------------LGKEF 240 (287)
T ss_pred hHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhhHHHHHH------------------------------------HHHHH
Confidence 999999999999999999999999999999887654322 11333
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891 251 IEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (725)
Q Consensus 251 ~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~ 294 (725)
......++..+++....+.+.+.++-.|++|+|.+|++||.+.+
T Consensus 241 ~y~q~~ms~~ea~~~~~~~m~~n~ql~d~kegiasf~~krp~~~ 284 (287)
T KOG1682|consen 241 YYKQLAMSQAEAFSAAQEKMCENFQLGDTKEGIASFFEKRPPNW 284 (287)
T ss_pred HHHHHHHhHHHHHHHHHHHHhhcccccchHHHHHHHhccCCCCc
Confidence 44445566677888888899999999999999999999998775
No 105
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=1.6e-35 Score=329.59 Aligned_cols=202 Identities=22% Similarity=0.323 Sum_probs=174.2
Q ss_pred CCcEEEEEecCcEEEEEeCCC-----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcC-CCCCcCCCCchh
Q 004891 3 APRVTMEVGNDGVAIITLINP-----------PVNALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGN-GGRFSGGFDINV 69 (725)
Q Consensus 3 ~~~i~~~~~~~~v~~i~l~~p-----------~~Nal~~~~~~~l~~~l~~~~-~~~~v~~vVl~g~-g~~F~aG~Dl~~ 69 (725)
++++.++. +++|++|||||| +.|++|.+|+.+|.+++++++ .|+++|+|||||. |++||+|+|+++
T Consensus 10 ~~~v~~~~-~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~ 88 (546)
T TIGR03222 10 YRHWKLTF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFM 88 (546)
T ss_pred CceEEEEe-eCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHH
Confidence 46788888 789999999996 569999999999999999999 7899999999987 589999999998
Q ss_pred hhhccCCCcccccchhHH---HHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCC--ceEeCcccc-cCCCCC
Q 004891 70 FQKVHGAGDVSLMPDVSV---ELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELT-LGVIPG 143 (725)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~--a~~~~pe~~-~Gl~p~ 143 (725)
+....... ...+..... +.+.+.+.++||||||+|||+|+|||++|+++||+||++++ ++|++||++ +|++|+
T Consensus 89 ~~~~~~~~-~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~ 167 (546)
T TIGR03222 89 LGLSTHAW-KVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPG 167 (546)
T ss_pred Hhccccch-hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCc
Confidence 75321111 111111111 12225577899999999999999999999999999999986 799999997 999999
Q ss_pred chhhchHh--hhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCch
Q 004891 144 FGGTQRLP--RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKP 206 (725)
Q Consensus 144 ~g~~~~l~--r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~ 206 (725)
+|++.+++ +++|..+|++|+++|++++|+||++|||||+|||++++.+++.++|+++++.|+.
T Consensus 168 ~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~ 232 (546)
T TIGR03222 168 TGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQSDR 232 (546)
T ss_pred cchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHhCCCC
Confidence 99999997 7999999999999999999999999999999999999999999999999998763
No 106
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=2.1e-35 Score=329.99 Aligned_cols=204 Identities=22% Similarity=0.308 Sum_probs=176.9
Q ss_pred CCCCcEEEEEecCcEEEEEeCCC-----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcCC-CCCcCCCCc
Q 004891 1 MAAPRVTMEVGNDGVAIITLINP-----------PVNALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGNG-GRFSGGFDI 67 (725)
Q Consensus 1 M~~~~i~~~~~~~~v~~i~l~~p-----------~~Nal~~~~~~~l~~~l~~~~-~~~~v~~vVl~g~g-~~F~aG~Dl 67 (725)
|+++++.++. +++|++|||||| +.|++|.+|+.+|.+++++++ +|+++|+|||||.+ ++||+|+|+
T Consensus 12 ~~~~~~~~e~-~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL 90 (550)
T PRK08184 12 SQYRHWKLSF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANI 90 (550)
T ss_pred CCCceEEEEe-eCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCH
Confidence 6788999999 789999999954 569999999999999999999 78999999999974 899999999
Q ss_pred hhhhhccCCCcccccch---hHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCC--ceEeCcccc-cCCC
Q 004891 68 NVFQKVHGAGDVSLMPD---VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELT-LGVI 141 (725)
Q Consensus 68 ~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~--a~~~~pe~~-~Gl~ 141 (725)
+++....... ...+.. .....+.+.+.++||||||+|||+|+|||++|+++|||||++++ ++|++||++ +|++
T Consensus 91 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~ 169 (550)
T PRK08184 91 FMLGGSSHAW-KVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVL 169 (550)
T ss_pred HhHhccccch-hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccC
Confidence 9875421111 001111 11122335678899999999999999999999999999999987 899999997 9999
Q ss_pred CCchhhchHh--hhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCch
Q 004891 142 PGFGGTQRLP--RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKP 206 (725)
Q Consensus 142 p~~g~~~~l~--r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~ 206 (725)
|++|++++|+ +++|..+|++|+++|++++|+||+++||||+|||++++.+++.++|++|++.++.
T Consensus 170 P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~~~~ 236 (550)
T PRK08184 170 PGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAASDR 236 (550)
T ss_pred CCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999998 7899999999999999999999999999999999999999999999999998864
No 107
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=100.00 E-value=3.5e-35 Score=291.77 Aligned_cols=192 Identities=44% Similarity=0.704 Sum_probs=173.7
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc-ccccc
Q 004891 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VSLMP 83 (725)
Q Consensus 6 i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~-~~~~~ 83 (725)
+.++. +++|++|+||+|+ .|++|.+++++|.++++.++.|+++++|||||.|+.||+|.|++++.......+ ...+.
T Consensus 1 i~~~~-~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~ 79 (195)
T cd06558 1 VLVER-DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFI 79 (195)
T ss_pred CEEEE-ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHH
Confidence 35667 6799999999996 899999999999999999999999999999999999999999999876433221 22344
Q ss_pred hhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHH
Q 004891 84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM 163 (725)
Q Consensus 84 ~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ 163 (725)
....+++ +.+..+||||||+|||+|+|+|++++++||+||++++++|++||+++|++|++|++++|++++|...+++++
T Consensus 80 ~~~~~~~-~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~ 158 (195)
T cd06558 80 RELQELL-RALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELL 158 (195)
T ss_pred HHHHHHH-HHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHH
Confidence 4455666 678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHH
Q 004891 164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALD 199 (725)
Q Consensus 164 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ 199 (725)
++|++++++||+++|+||++++.+++.+++.+++++
T Consensus 159 l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~a~~ 194 (195)
T cd06558 159 LTGRRISAEEALELGLVDEVVPDEELLAAALELARR 194 (195)
T ss_pred HcCCccCHHHHHHcCCCCeecChhHHHHHHHHHHhh
Confidence 999999999999999999999999999999988875
No 108
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=100.00 E-value=1.9e-34 Score=324.07 Aligned_cols=244 Identities=25% Similarity=0.324 Sum_probs=207.2
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (725)
Q Consensus 307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (725)
.++||+|||+|+||++||..|+++|++|++||+++++++...+.+....... +.+.... ....+++++++++ +.+
T Consensus 3 ~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~---~~l~~~~-~~~~g~i~~~~~~~ea~ 78 (495)
T PRK07531 3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAY---AMLTDAP-LPPEGRLTFCASLAEAV 78 (495)
T ss_pred CcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHH---hhhccch-hhhhhceEeeCCHHHHh
Confidence 3679999999999999999999999999999999999876543322221111 1111110 1123456777777 578
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCC
Q 004891 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS 465 (725)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~ 465 (725)
++||+||+|+||+.++|+++|+++.+.+++++||+|+||+++++++++.+..+.++++.|||+|++.++++|+++|+.|+
T Consensus 79 ~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~ 158 (495)
T PRK07531 79 AGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTS 158 (495)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCC
Confidence 99999999999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCeeEEE-cCCcchhhhhhhHHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---ccHHHHHHhhc
Q 004891 466 AQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQLLDLAG 539 (725)
Q Consensus 466 ~e~~~~~~~l~~~lGk~~v~v-~d~~Gfi~nRl~~a~~~Ea~~l~~~G-v~~~dID~~~-~~~G~p---~Gpf~~~D~~G 539 (725)
+++++.++++++.+|+.++++ ++.+||++||++.++++||+.++++| +++++||.++ .++|++ +|||+++|+.|
T Consensus 159 ~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g 238 (495)
T PRK07531 159 PETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQMGLFETYRIAG 238 (495)
T ss_pred HHHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccccchHHHHHhcC
Confidence 999999999999999999999 59999999999999999999999997 6999999999 788875 79999999998
Q ss_pred hH-HHHHHHHHHHhhC
Q 004891 540 YG-VAAATSKEFDKAF 554 (725)
Q Consensus 540 ld-~~~~~~~~l~~~~ 554 (725)
++ .+.+.++++.+.+
T Consensus 239 ~~~g~~~~~~~~~~~~ 254 (495)
T PRK07531 239 GEAGMRHFLAQFGPCL 254 (495)
T ss_pred cHHHHHHHHHHhchhh
Confidence 54 4555666665543
No 109
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=6.3e-35 Score=275.96 Aligned_cols=232 Identities=25% Similarity=0.395 Sum_probs=213.1
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCC-HHHHHHhhcCcccccCc-cc
Q 004891 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT-QDKANNALKMLKGVLDY-SE 384 (725)
Q Consensus 307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~-~~~~~~~~~~i~~~~~~-~~ 384 (725)
++.||+|+|.|.+|+++|..|+..||+|.+||+.+++++-+++.+++.+.++-+.|.+. .-.+++.+..|+.++++ +.
T Consensus 2 s~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~ 81 (313)
T KOG2305|consen 2 SFGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNEL 81 (313)
T ss_pred CccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHH
Confidence 46899999999999999999999999999999999999999999999988887755432 11234566788889998 77
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCC
Q 004891 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 464 (725)
Q Consensus 385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t 464 (725)
+++|=.|-||+||++.+|+.++++|.+.+.|.+|++|+||++.++...+.+.+.++++..||.|||+..|++|++|.+-|
T Consensus 82 vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPaPwT 161 (313)
T KOG2305|consen 82 VKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPAPWT 161 (313)
T ss_pred HhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCeeEEE-cCCcchhhhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCc---cHHHHHHhh
Q 004891 465 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPI---GPFQLLDLA 538 (725)
Q Consensus 465 ~~e~~~~~~~l~~~lGk~~v~v-~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv-~~~dID~~~-~~~G~p~---Gpf~~~D~~ 538 (725)
+|+++++.+.+++.+|..||.. ++..||..||+.++++||..+++..|+ +..|+|.+| .|+|.+- ||++.+.+-
T Consensus 162 sp~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dvD~VmS~GLG~RYAflG~lET~HLN 241 (313)
T KOG2305|consen 162 SPDTVDRTRALMRSIGQEPVTLKREILGFALNRIQYAILNETWRLVASGILNVNDVDAVMSAGLGPRYAFLGPLETAHLN 241 (313)
T ss_pred ChhHHHHHHHHHHHhCCCCcccccccccceeccccHHHHHHHHHHHHccCcchhhHHHHHhcCCCcchhcccchhhhhcC
Confidence 9999999999999999999988 689999999999999999999999997 999999999 9999763 999988774
No 110
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.97 E-value=1.2e-30 Score=263.21 Aligned_cols=290 Identities=24% Similarity=0.307 Sum_probs=219.9
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC-CCCCcCCCCchhhhhccCCCcc--
Q 004891 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDV-- 79 (725)
Q Consensus 4 ~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~-- 79 (725)
+.|.++. .+...+||||||| .||+|.+|+..+.-.|..++.++.+++||+.|. |++||+|+|+........+.+.
T Consensus 38 ~~VL~e~-~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~ 116 (401)
T KOG1684|consen 38 DQVLVEG-KGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPE 116 (401)
T ss_pred CceEEec-CCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchH
Confidence 4677787 7889999999997 799999999999999999999999999999887 5899999999866543322222
Q ss_pred -cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHH
Q 004891 80 -SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (725)
Q Consensus 80 -~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (725)
..+...--.+. ..|.++.||.||.++|..+|||+.|+.+.-||||++++.|.+||..+|++|+.|++++|+|+.| ..
T Consensus 117 ~~~fF~~eYsl~-~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg-~l 194 (401)
T KOG1684|consen 117 VKKFFTEEYSLN-HLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG-YL 194 (401)
T ss_pred HHHHHHHHHHHH-HHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc-HH
Confidence 22222111233 5689999999999999999999999999999999999999999999999999999999999999 88
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhh-------------------hccCCCC-
Q 004891 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL-------------------HRTDKLG- 218 (725)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~-------------------~~~~~~~- 218 (725)
..++.+||+++++.+|+..||.++-||.+.+..--.++...+...|...+... ...+...
T Consensus 195 g~YLgLTG~rl~GaD~~~~GlATHyv~S~~l~~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~~~Fs 274 (401)
T KOG1684|consen 195 GLYLGLTGQRLSGADALRCGLATHYVPSEKLPSLEERLLKNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVINKCFS 274 (401)
T ss_pred HHhhhhccceecchHHHHhcchhhccchhhhhHHHHHHhhhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHHHhhc
Confidence 89999999999999999999999999987764444444423322221111110 0000001
Q ss_pred --ChHHHHHHHH----------HHHHHHHHhCCCCh-hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHH
Q 004891 219 --SLSEAREVLK----------LARLQAKKTAPNMP-QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHV 285 (725)
Q Consensus 219 --~~~~~~~~~~----------~~~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~a 285 (725)
...+..+.+. .+....|+-....| ....+.+.++++....+++++..|.+.-.....+.||.||++|
T Consensus 275 ~~tVeeIie~lk~~q~~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l~~Eyr~s~~~~~~~DF~EGvRA 354 (401)
T KOG1684|consen 275 ANTVEEIIEALKNYQQSADGSEWAKETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCLTMEYRLSLRMLMRGDFCEGVRA 354 (401)
T ss_pred cccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchhhhhhh
Confidence 1122222111 12223344445566 4467788899999999999999999999999999999999999
Q ss_pred HHh--hhhhcCCC
Q 004891 286 FFA--QRATSKVP 296 (725)
Q Consensus 286 F~~--~r~~~~~~ 296 (725)
-+- .+.|+|.|
T Consensus 355 ~LIDKd~~PKW~p 367 (401)
T KOG1684|consen 355 VLIDKDQNPKWDP 367 (401)
T ss_pred eeecCCcCCCCCC
Confidence 875 34455444
No 111
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.94 E-value=1e-25 Score=252.69 Aligned_cols=160 Identities=15% Similarity=0.131 Sum_probs=147.7
Q ss_pred CCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcch
Q 004891 413 CPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF 492 (725)
Q Consensus 413 ~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gf 492 (725)
+.+++++++..++.+.+..+....+|++++|+|||+|++.++++||++++.|++++++.+.++++.+||.||+++|.|||
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~gk~pi~v~d~~Gf 417 (507)
T PRK08268 338 SADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQDGKAVSVIRDSPGF 417 (507)
T ss_pred ccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEeCCCccH
Confidence 45677777777766666776666788999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHHHHhhCCCCC-CCcHHHHHHHH
Q 004891 493 AVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRS-FQSPLVDLLLK 569 (725)
Q Consensus 493 i~nRl~~a~~~Ea~~l~~~Gv-~~~dID~~~-~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~-~~~~~l~~~v~ 569 (725)
|+||++.+++||+++++++|+ +++|||.++ .++|||+|||+++|.+|+|.++++++.++..++++. .|++++++|++
T Consensus 418 i~nRll~~~~nEa~~ll~eGvas~~dID~a~~~g~G~p~GP~~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~ll~~~v~ 497 (507)
T PRK08268 418 VAQRTVAMIVNEAADIAQQGIASPADIDLAMRLGLNYPLGPLAWGDRLGAARILRVLENLQALYGDPRYRPSPWLRRRAA 497 (507)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhCHHHHHHHHHHHHHHhCCCcCCcCHHHHHHHH
Confidence 999999999999999999997 999999999 899999999999999999999999999999999744 48999999999
Q ss_pred cCC
Q 004891 570 SGR 572 (725)
Q Consensus 570 ~g~ 572 (725)
+|.
T Consensus 498 ~G~ 500 (507)
T PRK08268 498 LGL 500 (507)
T ss_pred cCC
Confidence 875
No 112
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=99.90 E-value=3.5e-24 Score=187.30 Aligned_cols=94 Identities=40% Similarity=0.689 Sum_probs=87.7
Q ss_pred chhhhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHHHHhhCCCCCC-CcHHHHHH
Q 004891 491 GFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSF-QSPLVDLL 567 (725)
Q Consensus 491 Gfi~nRl~~a~~~Ea~~l~~~Gv-~~~dID~~~-~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~-~~~~l~~~ 567 (725)
|||+||++.++++||++++++|+ +|+|||.++ .++|+|+|||+++|.+|+|++.++++.+.+.++++.+ |++++++|
T Consensus 1 GFi~nRl~~~~~~ea~~l~~egvas~~~ID~~~~~~~G~p~Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~m 80 (97)
T PF00725_consen 1 GFIVNRLLAALLNEAARLVEEGVASPEDIDRAMRYGLGFPMGPFELADLVGLDVVYHILEYLAAALGDRAFRPSPLLKEM 80 (97)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTHSSTHHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHHHHHH
Confidence 89999999999999999999995 999999999 8899999999999999999999999999999998855 79999999
Q ss_pred HHcCCCccccCceeeec
Q 004891 568 LKSGRNGKANGKGLYTY 584 (725)
Q Consensus 568 v~~g~~G~k~g~Gfy~y 584 (725)
+++|++|+|+|+|||+|
T Consensus 81 v~~g~~G~k~g~Gfy~Y 97 (97)
T PF00725_consen 81 VEEGRLGRKSGKGFYDY 97 (97)
T ss_dssp HHTT--BGGGTBSSSBE
T ss_pred HHCCCCcCcCCCcceeC
Confidence 99999999999999998
No 113
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.87 E-value=4.2e-20 Score=206.83 Aligned_cols=119 Identities=15% Similarity=0.168 Sum_probs=113.3
Q ss_pred CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccH
Q 004891 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGP 531 (725)
Q Consensus 454 ~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv-~~~dID~~~-~~~G~p~Gp 531 (725)
+.+||+++..|++++++++.++++.+||.|++++|.||||+||++.+++|||++++++|+ +++|||.+| .++|||+||
T Consensus 378 ~~vEv~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGvas~~dID~a~~~g~G~P~GP 457 (503)
T TIGR02279 378 KRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQIADYPGLLILRTVAMLANEAADAVLQGVASAQDIDTAMRLGVNYPYGP 457 (503)
T ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCcCH
Confidence 568899999999999999999999999999999999999999999999999999999998 899999999 899999999
Q ss_pred HHHHHhhchHHHHHHHHHHHhhCCCCC-CCcHHHHHHHHcCC
Q 004891 532 FQLLDLAGYGVAAATSKEFDKAFPDRS-FQSPLVDLLLKSGR 572 (725)
Q Consensus 532 f~~~D~~Gld~~~~~~~~l~~~~~~~~-~~~~~l~~~v~~g~ 572 (725)
|+++|.+|+|+++++++++++.+++.. .|++++++|+..|.
T Consensus 458 ~~~~D~~Gld~~~~~l~~l~~~~~~~~~~p~~~L~~~v~~g~ 499 (503)
T TIGR02279 458 LAWAAQLGWQRILRVLENLQHHYGEERYRPSSLLRRRALLGS 499 (503)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHcCCCcCCcCHHHHHHHHcCC
Confidence 999999999999999999999999644 48999999999875
No 114
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=99.78 E-value=4.3e-19 Score=155.11 Aligned_cols=87 Identities=34% Similarity=0.553 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCC-CCCCCHHHH
Q 004891 624 IVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPSRFLE 702 (725)
Q Consensus 624 i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~~l~ 702 (725)
|.||++.++++||++++++|++ |++|||.+++.|+|||+ |||+++|.+|++++.+.++.+.+.+++ .|.|+++++
T Consensus 3 i~nRl~~~~~~ea~~l~~egva-s~~~ID~~~~~~~G~p~---Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~ 78 (97)
T PF00725_consen 3 IVNRLLAALLNEAARLVEEGVA-SPEDIDRAMRYGLGFPM---GPFELADLVGLDVVYHILEYLAAALGDRAFRPSPLLK 78 (97)
T ss_dssp THHHHHHHHHHHHHHHHHTTSS-SHHHHHHHHHHHHTHSS---THHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHhCCCCC---ccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHHHH
Confidence 6899999999999999999998 89999999999999998 999999999999999999999999998 589999999
Q ss_pred HHH-------HcCCCCCCC
Q 004891 703 ERA-------TKGIPLSAP 714 (725)
Q Consensus 703 ~~~-------~~g~gf~~~ 714 (725)
+|+ |+|+|||+|
T Consensus 79 ~mv~~g~~G~k~g~Gfy~Y 97 (97)
T PF00725_consen 79 EMVEEGRLGRKSGKGFYDY 97 (97)
T ss_dssp HHHHTT--BGGGTBSSSBE
T ss_pred HHHHCCCCcCcCCCcceeC
Confidence 999 779999998
No 115
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.77 E-value=3.3e-18 Score=175.14 Aligned_cols=188 Identities=20% Similarity=0.204 Sum_probs=140.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (725)
+||+|||+|.||.+||.+|.++||+|++||+++++..... .+.| .....+. +++++
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~----------~~~G-------------a~~a~s~~eaa~~ 57 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELL----------AAAG-------------ATVAASPAEAAAE 57 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHH----------HHcC-------------CcccCCHHHHHHh
Confidence 4899999999999999999999999999999998843221 1222 2223333 78899
Q ss_pred CCEEEEeccCChHHHHHHHH--HHHHhCCCCeEEEecCCCCChH---HHhcccCCCCcEEEEecCCCCCCCCe-------
Q 004891 388 VDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHVMPL------- 455 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~p~~~~~l------- 455 (725)
||+||.|||++.++...++. .+.+.+++++++++++| ++++ ++++.+.. .|.+|++.|..+..
T Consensus 58 aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmST-isp~~a~~~a~~~~~----~G~~~lDAPVsGg~~~A~~Gt 132 (286)
T COG2084 58 ADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMST-ISPETARELAAALAA----KGLEFLDAPVSGGVPGAAAGT 132 (286)
T ss_pred CCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCC-CCHHHHHHHHHHHHh----cCCcEEecCccCCchhhhhCc
Confidence 99999999999999888884 58888999999986544 4443 33333322 26777776655533
Q ss_pred eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCC-cc---hhhhhhhHH----HHHHHHHHHHc-CCCHHHHHHHH-Hhc
Q 004891 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC-TG---FAVNRAFFP----YSQSARLLVSL-GVDVFRIDSAI-RSF 525 (725)
Q Consensus 456 veii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~G---fi~nRl~~a----~~~Ea~~l~~~-Gv~~~dID~~~-~~~ 525 (725)
+.|+.|. +++.+++++++++.+|+.++++++. .| .++|+++.+ .+.|++.+.+. |++++.+..++ .+.
T Consensus 133 LtimvGG--~~~~f~r~~pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~ 210 (286)
T COG2084 133 LTIMVGG--DAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGA 210 (286)
T ss_pred eEEEeCC--CHHHHHHHHHHHHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccc
Confidence 3444443 7999999999999999999999875 23 356777543 34599999877 99999999999 543
Q ss_pred C
Q 004891 526 G 526 (725)
Q Consensus 526 G 526 (725)
+
T Consensus 211 ~ 211 (286)
T COG2084 211 A 211 (286)
T ss_pred c
Confidence 3
No 116
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.76 E-value=2.2e-18 Score=167.98 Aligned_cols=144 Identities=19% Similarity=0.142 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEEccccc
Q 004891 31 PIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL 110 (725)
Q Consensus 31 ~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~ 110 (725)
-.+.+|.++++++++|+++|+|||++ ||.|+|+.... ...+.+ +.+.+++|||||+|||.|.
T Consensus 22 ~~~~~l~~~l~~a~~d~~v~~vvl~~----~~~gg~~~~~~-------------~~~~~i-~~~~~~~kpVia~v~G~a~ 83 (177)
T cd07014 22 VSGDTTAAQIRDARLDPKVKAIVLRV----NSPGGSVTASE-------------VIRAEL-AAARAAGKPVVASGGGNAA 83 (177)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEe----eCCCcCHHHHH-------------HHHHHH-HHHHhCCCCEEEEECCchh
Confidence 35789999999999999999999997 68898876532 122445 5578899999999999999
Q ss_pred chhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhc--------hHhhhhC--HHHHHHHHHcCCCCCHHHHHHcCCc
Q 004891 111 GGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ--------RLPRLVG--LSKAIEMMLLSKSITSEEGWKLGLI 180 (725)
Q Consensus 111 GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~--------~l~r~vG--~~~a~~l~l~g~~~~a~eA~~~Glv 180 (725)
|+|+.|+++||+++++++++|+++.+..+..+...... .+++..| ....++++..|..++|++|++.|||
T Consensus 84 g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLV 163 (177)
T cd07014 84 SGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLV 163 (177)
T ss_pred HHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCc
Confidence 99999999999999999999999988776433222222 4455555 8888999999999999999999999
Q ss_pred ceecCcchHHHH
Q 004891 181 DAVVTSEELLKV 192 (725)
Q Consensus 181 ~~vv~~~~l~~~ 192 (725)
|++.+.+++.+.
T Consensus 164 D~v~~~~e~~~~ 175 (177)
T cd07014 164 DSLGSFDDAVAK 175 (177)
T ss_pred ccCCCHHHHHHH
Confidence 999988877553
No 117
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.73 E-value=3.3e-17 Score=160.82 Aligned_cols=150 Identities=25% Similarity=0.264 Sum_probs=118.5
Q ss_pred EEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEE-cCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHH
Q 004891 16 AIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLT-GNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI 94 (725)
Q Consensus 16 ~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (725)
++|.++. .++..+...+.+.|+.+++++ ++.|+|. ..+ |+++.. ...++ +.|
T Consensus 2 ~vv~i~g----~I~~~~~~~l~~~l~~a~~~~-~~~vvl~InSp-----GG~v~~----------------~~~i~-~~l 54 (187)
T cd07020 2 YVLEING----AITPATADYLERAIDQAEEGG-ADALIIELDTP-----GGLLDS----------------TREIV-QAI 54 (187)
T ss_pred EEEEEee----EEChHHHHHHHHHHHHHHhCC-CCEEEEEEECC-----CCCHHH----------------HHHHH-HHH
Confidence 5666653 366777889999999998665 7877775 322 233321 12444 567
Q ss_pred hhCCCcEEEEEc---ccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCc--------------hhhchHhhhhCH-
Q 004891 95 EDCKKPIVAAVE---GLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGF--------------GGTQRLPRLVGL- 156 (725)
Q Consensus 95 ~~~~kp~Iaav~---G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~--------------g~~~~l~r~vG~- 156 (725)
..+||||||+|+ |+|+|+|+.++++||+++++++++|+.+++..+..+.. +....+++..|.
T Consensus 55 ~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~ 134 (187)
T cd07020 55 LASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRN 134 (187)
T ss_pred HhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 889999999999 99999999999999999999999999999985554432 245578898998
Q ss_pred -HHHHHHHHcCCCCCHHHHHHcCCcceecCcc-hHHHH
Q 004891 157 -SKAIEMMLLSKSITSEEGWKLGLIDAVVTSE-ELLKV 192 (725)
Q Consensus 157 -~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~-~l~~~ 192 (725)
.++.+++++|+.++|+||+++||||+|+++. ++...
T Consensus 135 ~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~~ 172 (187)
T cd07020 135 AEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLKK 172 (187)
T ss_pred HHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHHH
Confidence 6899999999999999999999999999876 55543
No 118
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.72 E-value=1.4e-17 Score=158.63 Aligned_cols=91 Identities=29% Similarity=0.426 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCC--CCCCC
Q 004891 621 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN--FFKPS 698 (725)
Q Consensus 621 ~~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~--~~~p~ 698 (725)
.-.|+||+|.|+++||+++++.|.+ |-+|||.+|.+|.|||| |||+++|.+|+|++.-+|+-|.+.+++ .|+|+
T Consensus 199 pGFIVNRlLiPyl~ea~r~yerGdA-skeDIDtaMklGagyPM---GPfEL~DyvGLDt~kfvmdgwhe~~pe~~~f~ps 274 (298)
T KOG2304|consen 199 PGFIVNRLLIPYLMEAIRMYERGDA-SKEDIDTAMKLGAGYPM---GPFELADYVGLDTCKFVMDGWHEGYPEDSLFAPS 274 (298)
T ss_pred CchhhhHHHHHHHHHHHHHHHhcCC-cHhhHHHHHhccCCCCC---ChHHHHHHhhHHHHHHHHHHHHhcCCcccccCCC
Confidence 4479999999999999999999999 99999999999999999 999999999999999999999999853 89999
Q ss_pred HHHHHHH-------HcCCCCCCCC
Q 004891 699 RFLEERA-------TKGIPLSAPV 715 (725)
Q Consensus 699 ~~l~~~~-------~~g~gf~~~~ 715 (725)
|+|.++| |+|+|||+|.
T Consensus 275 Pll~klVaegklGrKtg~GfY~Yk 298 (298)
T KOG2304|consen 275 PLLDKLVAEGKLGRKTGEGFYKYK 298 (298)
T ss_pred hHHHHHHhccccccccCccceecC
Confidence 9999999 7899999994
No 119
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.69 E-value=2e-16 Score=167.06 Aligned_cols=187 Identities=19% Similarity=0.235 Sum_probs=135.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCCC
Q 004891 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (725)
Q Consensus 310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD 389 (725)
||+|||+|.||.+||..|++.|++|++||+++++++... +.|. ....+..+.+++||
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g~------------~~~~~~~~~~~~aD 57 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELL-----------AAGA------------VTAETARQVTEQAD 57 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCCC------------cccCCHHHHHhcCC
Confidence 599999999999999999999999999999998876542 2221 11122226678999
Q ss_pred EEEEeccCChHHHHHHHH--HHHHhCCCCeEEEecCCCCChH---HHhcccCCCCcEEEEecCCCCCCC-------Ceee
Q 004891 390 MVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHVM-------PLLE 457 (725)
Q Consensus 390 lVIeavpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~p~~~~-------~lve 457 (725)
+||+|+|++..++..++. .+.+.++++++|++ +|+.++. ++.+.+... ++||+++|..+ ..++
T Consensus 58 ivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd-~st~~~~~~~~l~~~l~~~----g~~~~~~pv~g~~~~a~~g~l~ 132 (291)
T TIGR01505 58 VIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVD-MSSISPIESKRFAKAVKEK----GIDYLDAPVSGGEIGAIEGTLS 132 (291)
T ss_pred EEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc----CCCEEecCCCCCHHHHhcCCEE
Confidence 999999988777766653 36667788898875 4444443 344444322 45555433221 2245
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-Ccc---hhhhhhhHHH----HHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 004891 458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTG---FAVNRAFFPY----SQSARLLVSL-GVDVFRIDSAI-RSFG 526 (725)
Q Consensus 458 ii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G---fi~nRl~~a~----~~Ea~~l~~~-Gv~~~dID~~~-~~~G 526 (725)
++.+. ++++++.++++++.+|+.++++++ .+| +++|+++.+. ++|++.+.+. |++++++..++ .+.+
T Consensus 133 i~~gg--~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~ 209 (291)
T TIGR01505 133 IMVGG--DQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLA 209 (291)
T ss_pred EEecC--CHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcc
Confidence 55553 689999999999999999999975 555 4778887654 6799988866 89999999999 4444
No 120
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.67 E-value=8.1e-16 Score=162.97 Aligned_cols=188 Identities=17% Similarity=0.210 Sum_probs=136.8
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (725)
++||+|||+|.||.++|..+++.|++|++||++++..+... +.+ +..++++ +.++
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~-----------~~g-------------~~~~~~~~e~~~ 57 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVI-----------AAG-------------AETASTAKAVAE 57 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCC-------------CeecCCHHHHHh
Confidence 35899999999999999999999999999999998866532 112 1223344 4568
Q ss_pred CCCEEEEeccCChHHHHHHH--HHHHHhCCCCeEEEecCCCCChH---HHhcccCCCCcEEEEecCCCCCCC-------C
Q 004891 387 DVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHVM-------P 454 (725)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~p~~~~-------~ 454 (725)
+||+||+|+|++..++..++ ..+.+.++++++|++ +|+..+. ++.+.+... +.||+++|..+ .
T Consensus 58 ~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid-~st~~~~~~~~l~~~~~~~----g~~~~d~pv~g~~~~a~~g 132 (296)
T PRK11559 58 QCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVID-MSSIAPLASREIAAALKAK----GIEMLDAPVSGGEPKAIDG 132 (296)
T ss_pred cCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEE-CCCCCHHHHHHHHHHHHHc----CCcEEEcCCCCCHHHHhhC
Confidence 99999999998887776655 347777888998874 4444443 344444322 56666655332 2
Q ss_pred eeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-Ccchh---hhhhhHH----HHHHHHHHHHc-CCCHHHHHHHH-Hh
Q 004891 455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTGFA---VNRAFFP----YSQSARLLVSL-GVDVFRIDSAI-RS 524 (725)
Q Consensus 455 lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~Gfi---~nRl~~a----~~~Ea~~l~~~-Gv~~~dID~~~-~~ 524 (725)
.++++.|. ++++++.+.++++.+|+.++++++ .+|++ +|+++.+ .++|++.+++. |+++++++.++ .+
T Consensus 133 ~l~i~~gg--~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~ 210 (296)
T PRK11559 133 TLSVMVGG--DKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGG 210 (296)
T ss_pred cEEEEECC--CHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 34565553 689999999999999999999964 56664 6776543 57899998876 89999999998 44
Q ss_pred cC
Q 004891 525 FG 526 (725)
Q Consensus 525 ~G 526 (725)
++
T Consensus 211 ~~ 212 (296)
T PRK11559 211 LA 212 (296)
T ss_pred cc
Confidence 43
No 121
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.66 E-value=2.3e-16 Score=166.32 Aligned_cols=93 Identities=28% Similarity=0.393 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHH
Q 004891 622 KEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFL 701 (725)
Q Consensus 622 ~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l 701 (725)
-.+.||++.+++|||++|+++|++ +++|||.++++|+|||+ |||+++|.+|++.+.+.++.+.+.++++|.|+++|
T Consensus 185 Gf~~nRl~~~~~~ea~~~~~~gv~-~~~~iD~~~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~~l 260 (288)
T PRK09260 185 GFVTSRISALVGNEAFYMLQEGVA-TAEDIDKAIRLGLNFPM---GPLELGDLVGLDTRLNNLKYLHETLGEKYRPAPLL 260 (288)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhHHHHHHHHHHHHHHhCCCCCCCHHH
Confidence 368999999999999999999998 99999999999999998 99999999999999999999999999999999999
Q ss_pred HHHH-------HcCCCCCCCCCCC
Q 004891 702 EERA-------TKGIPLSAPVSSS 718 (725)
Q Consensus 702 ~~~~-------~~g~gf~~~~~~~ 718 (725)
++|+ |+|+|||+|+++.
T Consensus 261 ~~~~~~g~~G~k~g~Gfy~y~~~~ 284 (288)
T PRK09260 261 EKYVKAGRLGRKTGRGVYDYTNRE 284 (288)
T ss_pred HHHHHCCCCccccCCEEEECCCCC
Confidence 9999 7899999996654
No 122
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.64 E-value=1.2e-14 Score=152.41 Aligned_cols=154 Identities=20% Similarity=0.219 Sum_probs=119.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCCC
Q 004891 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (725)
Q Consensus 310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD 389 (725)
||+|||+|.||.++|..|.++|++|++||++++.++++. +.|.++ ..+++.+.+++||
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~~~aD 59 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAI-----------ERGLVD-----------EASTDLSLLKDCD 59 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HCCCcc-----------cccCCHhHhcCCC
Confidence 799999999999999999999999999999998876653 223211 1233445678999
Q ss_pred EEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCC------------CCCeee
Q 004891 390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH------------VMPLLE 457 (725)
Q Consensus 390 lVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~------------~~~lve 457 (725)
+||+|+| .....++++++.+.++++++|+ ++++.....+........+|+++||+..+. .++...
T Consensus 60 lVilavp--~~~~~~~~~~l~~~l~~~~ii~-d~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~ 136 (279)
T PRK07417 60 LVILALP--IGLLLPPSEQLIPALPPEAIVT-DVGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWV 136 (279)
T ss_pred EEEEcCC--HHHHHHHHHHHHHhCCCCcEEE-eCcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEE
Confidence 9999999 5555678899999888898875 455556555554444455799999975442 344556
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004891 458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (725)
Q Consensus 458 ii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d 488 (725)
+++++.++++.++.++++++.+|+.++++++
T Consensus 137 l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~~ 167 (279)
T PRK07417 137 LTPTENTDLNALAIVEELAVSLGSKIYTADP 167 (279)
T ss_pred EccCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 8888899999999999999999999998853
No 123
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.64 E-value=6.9e-16 Score=162.20 Aligned_cols=91 Identities=26% Similarity=0.448 Sum_probs=86.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCC-CCCCC
Q 004891 620 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPS 698 (725)
Q Consensus 620 ~~~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~ 698 (725)
+...|.||++++++|||++++++|++ +|+|||.++++|+|||+ |||+++|.+|++.+.++++.+.+.+++ +|.|+
T Consensus 184 ~~g~i~~Ri~~~~~~ea~~~~~~gv~-~~~diD~~~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~ 259 (282)
T PRK05808 184 APGFVVNRILIPMINEAIFVLAEGVA-TAEDIDEGMKLGCNHPI---GPLALADLIGLDTCLAIMEVLYEGFGDSKYRPC 259 (282)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCcCCCC
Confidence 45589999999999999999999998 89999999999999998 999999999999999999999999986 89999
Q ss_pred HHHHHHH-------HcCCCCCCC
Q 004891 699 RFLEERA-------TKGIPLSAP 714 (725)
Q Consensus 699 ~~l~~~~-------~~g~gf~~~ 714 (725)
++|++|+ |+|+|||+|
T Consensus 260 ~~l~~~~~~g~~G~k~g~Gfy~y 282 (282)
T PRK05808 260 PLLRKMVAAGWLGRKTGRGFYDY 282 (282)
T ss_pred HHHHHHHHCCCCccccCCcccCC
Confidence 9999998 678999998
No 124
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.63 E-value=7.8e-16 Score=161.35 Aligned_cols=89 Identities=25% Similarity=0.384 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCC-CCCCCHH
Q 004891 622 KEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPSRF 700 (725)
Q Consensus 622 ~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~~ 700 (725)
--+.||++.+++|||++|+++|++ |++|||.+++.|+|||+ |||+++|.+|++.++++++.+++.+++ +|.|+++
T Consensus 190 Gfi~nRi~~~~~~Ea~~ll~eGv~-~~~dID~~~~~g~G~p~---Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~p~~~ 265 (286)
T PRK07819 190 GFVVNALLVPYLLSAIRMVESGFA-TAEDIDKAMVLGCAHPM---GPLRLSDLVGLDTVKAIADSMYEEFKEPLYAPPPL 265 (286)
T ss_pred ChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhccHHHHHHHHHHHHHcCCCCCCCCHH
Confidence 368999999999999999999998 89999999999999998 999999999999999999999999886 8999999
Q ss_pred HHHHH-------HcCCCCCCC
Q 004891 701 LEERA-------TKGIPLSAP 714 (725)
Q Consensus 701 l~~~~-------~~g~gf~~~ 714 (725)
|++|+ |+|+|||+|
T Consensus 266 l~~~v~~g~~G~k~g~GfY~y 286 (286)
T PRK07819 266 LLRMVEAGLLGKKSGRGFYTY 286 (286)
T ss_pred HHHHHHCCCCcccCCCEeccC
Confidence 99999 678999998
No 125
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.62 E-value=6.1e-15 Score=147.71 Aligned_cols=188 Identities=19% Similarity=0.195 Sum_probs=133.0
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (725)
Q Consensus 307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (725)
+.++||+||+|.||++|+.+|.++||+|++|||+.++.+... +.| .+...++ |.+
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~-----------~~G-------------a~v~~sPaeVa 89 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQ-----------EAG-------------ARVANSPAEVA 89 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHH-----------Hhc-------------hhhhCCHHHHH
Confidence 568999999999999999999999999999999998876643 333 1223333 778
Q ss_pred cCCCEEEEeccCChHHHHHHHHH--HHHhCCCCeEEEecCCCCCh---HHHhcccCCCCcEEEEecCCCCCCC-------
Q 004891 386 KDVDMVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDL---NIVGEKTSSQDRIIGAHFFSPAHVM------- 453 (725)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~--l~~~~~~~~ii~s~tS~~~~---~~l~~~~~~~~r~ig~h~~~p~~~~------- 453 (725)
++||+||.+||+..+++..++.. +.+.++++.......||+.+ .++++..... +..|.+.|..+
T Consensus 90 e~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~----~~~~vDAPVSGg~~~A~~ 165 (327)
T KOG0409|consen 90 EDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNK----GGRFVDAPVSGGVKGAEE 165 (327)
T ss_pred hhcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhC----CCeEEeccccCCchhhhc
Confidence 99999999999999999888865 44444554443223344443 3566555432 33333333222
Q ss_pred CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCC-cc---hhhhhhhHHH----HHHHHHHHHc-CCCHHHHHHHH-H
Q 004891 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC-TG---FAVNRAFFPY----SQSARLLVSL-GVDVFRIDSAI-R 523 (725)
Q Consensus 454 ~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~G---fi~nRl~~a~----~~Ea~~l~~~-Gv~~~dID~~~-~ 523 (725)
..+.+..| .+++.++.+.++++.+||+.++++.. .| -+.|+++.+. +.|++.+.+. |+++..+-.++ .
T Consensus 166 G~Ltimag--Gde~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~ 243 (327)
T KOG0409|consen 166 GTLTIMAG--GDEALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNT 243 (327)
T ss_pred CeEEEEec--CcHHHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 23455555 47999999999999999999999653 22 4667765432 3489988876 99999988888 5
Q ss_pred h
Q 004891 524 S 524 (725)
Q Consensus 524 ~ 524 (725)
+
T Consensus 244 G 244 (327)
T KOG0409|consen 244 G 244 (327)
T ss_pred C
Confidence 4
No 126
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.61 E-value=2.2e-15 Score=159.39 Aligned_cols=93 Identities=25% Similarity=0.380 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCC-CCCCCH
Q 004891 621 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPSR 699 (725)
Q Consensus 621 ~~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~ 699 (725)
...+.||++.+++|||++++++|++ +++|||.++++|+|||+ |||+++|.+|++.+.+.++.+++.+++ +|.|++
T Consensus 186 ~g~i~nri~~~~~~ea~~~~~~gv~-~~~~iD~~~~~g~g~~~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~~ 261 (295)
T PLN02545 186 PGFIVNRILMPMINEAFYALYTGVA-SKEDIDTGMKLGTNHPM---GPLHLADFIGLDTCLSIMKVLHEGLGDSKYRPCP 261 (295)
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCC---CHHHHHHHhchHHHHHHHHHHHHHcCCCcCCCCH
Confidence 3479999999999999999999998 89999999999999998 999999999999999999999999886 899999
Q ss_pred HHHHHH-------HcCCCCCCCCCC
Q 004891 700 FLEERA-------TKGIPLSAPVSS 717 (725)
Q Consensus 700 ~l~~~~-------~~g~gf~~~~~~ 717 (725)
+|++|+ |+|+|||+|++.
T Consensus 262 ~l~~~~~~g~~G~k~g~Gfy~y~~~ 286 (295)
T PLN02545 262 LLVQYVDAGRLGRKSGRGVYHYDGK 286 (295)
T ss_pred HHHHHHHCCCCcccCCCeeeECCCC
Confidence 999998 678999999554
No 127
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.60 E-value=2.1e-15 Score=156.08 Aligned_cols=92 Identities=25% Similarity=0.432 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhC--CCCCCC
Q 004891 621 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYG--NFFKPS 698 (725)
Q Consensus 621 ~~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~--~~~~p~ 698 (725)
+--|.||++.++++||++++.+|++ ++++||.+|+.|+|||+ |||+++|.+|+|..++.++.+.+.++ +.|.|+
T Consensus 185 pGFi~NRil~~~~~eA~~l~~eGva-~~e~ID~~~~~~~G~pm---Gpf~l~D~~GlD~~~~i~~~~~~~~~~~~~~~~~ 260 (307)
T COG1250 185 PGFIVNRLLAALLNEAIRLLEEGVA-TPEEIDAAMRQGLGLPM---GPFELADLIGLDVMLHIMKVLNETLGDDPYYRPP 260 (307)
T ss_pred CceehHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhccCCCc---cHHHHHHHHhHHHHHHHHHHHHHhcCCCcccccc
Confidence 4478999999999999999999999 99999999999999998 99999999999999999999998887 378899
Q ss_pred HHHHHHH-------HcCCCCCCCCC
Q 004891 699 RFLEERA-------TKGIPLSAPVS 716 (725)
Q Consensus 699 ~~l~~~~-------~~g~gf~~~~~ 716 (725)
+++++|+ |+|+|||+|++
T Consensus 261 ~~~~~~v~~g~lG~Ksg~GfY~y~~ 285 (307)
T COG1250 261 PLLRKLVEAGRLGRKSGKGFYDYRG 285 (307)
T ss_pred HHHHHHHhcccccccCCCcceeccc
Confidence 9999998 78999999975
No 128
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.59 E-value=5.9e-15 Score=147.73 Aligned_cols=159 Identities=18% Similarity=0.165 Sum_probs=113.5
Q ss_pred cEEEEEeCCC--C-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHH
Q 004891 14 GVAIITLINP--P-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (725)
Q Consensus 14 ~v~~i~l~~p--~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (725)
+|++|.++.| + .+.-+.-.+.+|.++|+.+..||++++|||+ .||+|+|+..+.. ....+
T Consensus 1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~~-------------~~~~l 63 (211)
T cd07019 1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASEV-------------IRAEL 63 (211)
T ss_pred CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHHH-------------HHHHH
Confidence 4777777766 2 2333445689999999999999999999998 7999999977532 12344
Q ss_pred HHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcc------------cccCCCCC---chhh--------
Q 004891 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPE------------LTLGVIPG---FGGT-------- 147 (725)
Q Consensus 91 ~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe------------~~~Gl~p~---~g~~-------- 147 (725)
+.+..++|||||+++|.|.|+|+.|+++||+++|++.+.|+.-- -++|+-+. .++.
T Consensus 64 -~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~ 142 (211)
T cd07019 64 -AAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 142 (211)
T ss_pred -HHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCC
Confidence 55788999999999999999999999999999999999886332 12232111 1000
Q ss_pred ------chH-----------------hhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHH
Q 004891 148 ------QRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191 (725)
Q Consensus 148 ------~~l-----------------~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~ 191 (725)
..+ .|.+.+. ..+-+..|..+++++|++.||||++-..++..+
T Consensus 143 ~s~e~r~~~~~~ld~~~~~f~~~Va~~R~~~~~-~l~~~~~~~~~~~~~A~~~GLvD~i~~~~~~~~ 208 (211)
T cd07019 143 LPPEAQLGLQLSIENGYKRFITLVADARHSTPE-QIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVA 208 (211)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHH-HHHHhcCCcEEeHHHHHHcCCcccCCCHHHHHH
Confidence 000 1111112 223355788999999999999999987666544
No 129
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.59 E-value=6.2e-14 Score=146.23 Aligned_cols=186 Identities=19% Similarity=0.122 Sum_probs=136.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC----cEEEE-eCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI----YVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~----~V~~~-d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~- 382 (725)
+||+|||+|.||.+|+..|.++|+ +|++| |+++++.+... +.| +..+++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~-----------~~g-------------~~~~~~~~ 56 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQ-----------SLG-------------VKTAASNT 56 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHH-----------HcC-------------CEEeCChH
Confidence 479999999999999999999998 89999 99988765432 112 2223343
Q ss_pred ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeE-ecC
Q 004891 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEI-VRT 461 (725)
Q Consensus 383 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lvei-i~~ 461 (725)
+.+++||+||.|++ .+...+++.++.+.++++++|+|.+++++...+....... +++..+|..|......+.+ +.+
T Consensus 57 e~~~~aDvVil~v~--~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~~~~~~l~~~ 133 (266)
T PLN02688 57 EVVKSSDVIILAVK--PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVGEAASVMSLG 133 (266)
T ss_pred HHHhcCCEEEEEEC--cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHhCceEEEEeC
Confidence 55789999999996 6667788888888888889888888999998888766544 7888888888777666554 457
Q ss_pred CCCCHHHHHHHHHHHHHcCCeeEEEcCC-----cch--hhhhhhHHHHHHHH-HHHHcCCCHHHHHHHH
Q 004891 462 ERTSAQVILDLMTVGKIIKKVPVVVGNC-----TGF--AVNRAFFPYSQSAR-LLVSLGVDVFRIDSAI 522 (725)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lGk~~v~v~d~-----~Gf--i~nRl~~a~~~Ea~-~l~~~Gv~~~dID~~~ 522 (725)
..++++.++.++++++.+|+ ++++++. .|. -...+++.++.... .....|+++++...++
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~-~~~~~e~~~d~~~~~~g~g~a~~~~~~~a~~ea~~~~Gl~~~~a~~~~ 201 (266)
T PLN02688 134 PAATADDRDLVATLFGAVGK-IWVVDEKLLDAVTGLSGSGPAYIFLAIEALADGGVAAGLPRDVALSLA 201 (266)
T ss_pred CCCCHHHHHHHHHHHHhCCC-EEEeCHHHcchhHhhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 77899999999999999999 7776431 011 11122222222111 1445699999988887
No 130
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.58 E-value=4.9e-15 Score=156.04 Aligned_cols=91 Identities=18% Similarity=0.287 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCCCC--CCC
Q 004891 621 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFF--KPS 698 (725)
Q Consensus 621 ~~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~--~p~ 698 (725)
...+.||++.+++|||++++++|++ |++|||.+|+.|+|||+ |||+++|.+|+|.+.++++.+.+.+++.+ .|+
T Consensus 188 pgfi~nRi~~~~~~ea~~l~~~g~a-~~~~iD~a~~~~~g~~~---Gp~~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~~ 263 (287)
T PRK08293 188 PGYILNSLLVPFLSAALALWAKGVA-DPETIDKTWMIATGAPM---GPFGILDIVGLDTAYNITSNWAEATDDENAKKAA 263 (287)
T ss_pred CCHhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCc---CHHHHHHHhchHHHHHHHHHHHHHhCCcccccch
Confidence 3479999999999999999999999 99999999999999998 99999999999999999999999888743 489
Q ss_pred HHHHHHH-------HcCCCCCCCC
Q 004891 699 RFLEERA-------TKGIPLSAPV 715 (725)
Q Consensus 699 ~~l~~~~-------~~g~gf~~~~ 715 (725)
++|++|+ |+|+|||+|+
T Consensus 264 ~~l~~~v~~g~~G~k~g~Gfy~y~ 287 (287)
T PRK08293 264 ALLKEYIDKGKLGVATGEGFYNYP 287 (287)
T ss_pred HHHHHHHHCCCCcccCCCccccCc
Confidence 9999999 7799999994
No 131
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.58 E-value=5.6e-15 Score=156.12 Aligned_cols=92 Identities=24% Similarity=0.340 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCC-CCCCCHH
Q 004891 622 KEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPSRF 700 (725)
Q Consensus 622 ~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~~ 700 (725)
-.+.||++.+++||++.++++|++ ++++||.++++|+|||+ |||+++|.+|++.+.++++.+.+.+++ +|.|+++
T Consensus 187 g~i~nRl~~~~~~ea~~~~~~g~~-~~~~iD~~~~~g~g~~~---GP~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~p~~~ 262 (292)
T PRK07530 187 AFIVNRILLPMINEAIYTLYEGVG-SVEAIDTAMKLGANHPM---GPLELADFIGLDTCLSIMQVLHDGLADSKYRPCPL 262 (292)
T ss_pred ChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCcCCCCHH
Confidence 368999999999999999999998 99999999999999997 999999999999999999999998876 8999999
Q ss_pred HHHHH-------HcCCCCCCCCCC
Q 004891 701 LEERA-------TKGIPLSAPVSS 717 (725)
Q Consensus 701 l~~~~-------~~g~gf~~~~~~ 717 (725)
|++|+ |+|+|||+|++.
T Consensus 263 l~~~v~~g~~G~k~g~Gfy~y~~~ 286 (292)
T PRK07530 263 LVKYVEAGWLGRKTGRGFYDYRGE 286 (292)
T ss_pred HHHHHHCCCCccccCCEeeeCCCC
Confidence 99999 889999999554
No 132
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.57 E-value=7e-15 Score=155.76 Aligned_cols=93 Identities=24% Similarity=0.307 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCC-CCCCCHHH
Q 004891 623 EIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPSRFL 701 (725)
Q Consensus 623 ~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~~l 701 (725)
.+.||++.++++|++.++++|++ ++++||.++..|+|||++..|||+++|.+|++.+.+.++.+.+.+++ +|.|+++|
T Consensus 184 fi~nri~~~~l~EAl~l~e~g~~-~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~p~~~l 262 (314)
T PRK08269 184 YIVPRIQALAMNEAARMVEEGVA-SAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDILYYASRYLAGEIGPDRFAPPAIV 262 (314)
T ss_pred cchHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 58999999999999999999998 99999999999999999999999999999999999999999998887 99999999
Q ss_pred HHHH-------HcCCCCCCCCC
Q 004891 702 EERA-------TKGIPLSAPVS 716 (725)
Q Consensus 702 ~~~~-------~~g~gf~~~~~ 716 (725)
++|+ |+|+|||+|++
T Consensus 263 ~~~v~~g~~G~ksG~GfY~y~~ 284 (314)
T PRK08269 263 VRNMEEGRDGLRTGAGFYDYAG 284 (314)
T ss_pred HHHHHCCCCcccCCCcceeCCC
Confidence 9999 78999999955
No 133
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.56 E-value=6.8e-15 Score=155.32 Aligned_cols=89 Identities=22% Similarity=0.247 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCC-CCCCCHH
Q 004891 622 KEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPSRF 700 (725)
Q Consensus 622 ~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~~ 700 (725)
--+.||++.+++|||++++++|++ |++|||++++.++|||+ |||+++|.+|+|.+.+.++.+.+.+++ +|.|+++
T Consensus 189 gfv~nRl~~~~~~ea~~~~~~g~a-~~~~iD~~~~~~~g~~~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~~~ 264 (291)
T PRK06035 189 GFFTTRFIEGWLLEAIRSFEIGIA-TIKDIDEMCKLAFGFPM---GPFELMDIIGIDTVYHIAEYLYEETGDPQFIPPNS 264 (291)
T ss_pred CeeHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhcCCCcc---CHHHHHHHhhHHHHHHHHHHHHHHcCCCcCCccHH
Confidence 358999999999999999999999 99999999999999998 999999999999999999999999986 8899999
Q ss_pred HHHHH-------Hc-----CCCCCCC
Q 004891 701 LEERA-------TK-----GIPLSAP 714 (725)
Q Consensus 701 l~~~~-------~~-----g~gf~~~ 714 (725)
|++|+ |+ |+|||+|
T Consensus 265 l~~~v~~g~~G~k~~~~~~g~Gfy~y 290 (291)
T PRK06035 265 LKQMVLNGYVGDKKVKYGSKGGWFDY 290 (291)
T ss_pred HHHHHHCCCCcCCCCCCCCCceeeec
Confidence 99999 67 8999998
No 134
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.56 E-value=3e-13 Score=147.11 Aligned_cols=171 Identities=19% Similarity=0.179 Sum_probs=122.6
Q ss_pred CcceEEEEc-CCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccc
Q 004891 307 GVRKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (725)
Q Consensus 307 ~~~kIaVIG-~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 385 (725)
.+++|+||| +|.||+++|..|.++|++|++||++... . . .+.+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~--~-------------------~---------------~~~~ 140 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWD--R-------------------A---------------EDIL 140 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcch--h-------------------H---------------HHHH
Confidence 568999998 9999999999999999999999986310 0 0 0245
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhcccCCCCcEEEEecCCCCCCCCeee--EecC
Q 004891 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE--IVRT 461 (725)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lve--ii~~ 461 (725)
++||+||+|+|+ .....++.++.+ +++++||++++|+ .++..+..... .+|+|.||+.++....+.. ++..
T Consensus 141 ~~aDlVilavP~--~~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~~~~~~~vv~~ 215 (374)
T PRK11199 141 ADAGMVIVSVPI--HLTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVGSLAKQVVVVC 215 (374)
T ss_pred hcCCEEEEeCcH--HHHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCCCCCCcccCCCEEEEc
Confidence 789999999994 456788899988 8999999988775 33455555433 3699999998876654432 4556
Q ss_pred CCCCHHHHHHHHHHHHHcCCeeEEEcC-Ccchhh---hhhhHHH-HHHHHHHHHcCCCHHHH
Q 004891 462 ERTSAQVILDLMTVGKIIKKVPVVVGN-CTGFAV---NRAFFPY-SQSARLLVSLGVDVFRI 518 (725)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~Gfi~---nRl~~a~-~~Ea~~l~~~Gv~~~dI 518 (725)
+.+++++++.+.++++.+|..++.++. ....++ +-+-... ..++..+.+.+.+++++
T Consensus 216 ~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~al~~~l~~~~~~~~~~ 277 (374)
T PRK11199 216 DGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAKENVDLEQL 277 (374)
T ss_pred CCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 667889999999999999999999852 222222 2221111 22455555566666554
No 135
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.55 E-value=3.3e-14 Score=150.24 Aligned_cols=186 Identities=15% Similarity=0.128 Sum_probs=124.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (725)
+||+|||+|.||.+||..|+++|++|++||+++++++...+ .| +..+++. +.+++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~-----------~g-------------~~~~~s~~~~~~~ 57 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVD-----------KG-------------ATPAASPAQAAAG 57 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------cC-------------CcccCCHHHHHhc
Confidence 58999999999999999999999999999999988765421 12 1123333 56789
Q ss_pred CCEEEEeccCChHHHHHHHH--HHHHhCCCCeEEEecCCCCChH---HHhcccC-CCCcEEEEecCCCC---CCCCeeeE
Q 004891 388 VDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN---IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEI 458 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~-~~~r~ig~h~~~p~---~~~~lvei 458 (725)
||+||.|+|++..++..++. .+.+.++++++++. +|+..+. ++.+.+. ...+|+.......+ ..+.+. +
T Consensus 58 aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid-~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~-~ 135 (296)
T PRK15461 58 AEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVID-MSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLL-L 135 (296)
T ss_pred CCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEE-E
Confidence 99999999987766655542 46667788888764 4554443 3333332 22233322111111 111222 3
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCc-c---hhhhhhh----HHHHHHHHHHHHc-CCCHHHHHHHH
Q 004891 459 VRTERTSAQVILDLMTVGKIIKKVPVVVGNCT-G---FAVNRAF----FPYSQSARLLVSL-GVDVFRIDSAI 522 (725)
Q Consensus 459 i~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~-G---fi~nRl~----~a~~~Ea~~l~~~-Gv~~~dID~~~ 522 (725)
+.|. +++++++++++++.+|+.++++++.. | .++|.++ ...+.|++.+.+. |++++.+-.++
T Consensus 136 ~~gg--~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l 206 (296)
T PRK15461 136 LAGG--TAEQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVM 206 (296)
T ss_pred EECC--CHHHHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3332 68999999999999999999988631 1 2344432 3445699888866 99999977777
No 136
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.52 E-value=3.6e-14 Score=151.46 Aligned_cols=95 Identities=22% Similarity=0.204 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHH
Q 004891 623 EIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLE 702 (725)
Q Consensus 623 ~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~ 702 (725)
.+.||++.++++||+.++++|++ ++++||.++..|+|||++..|||+++|.+|++.+.+.++.+.+.++++|.|+++|+
T Consensus 185 ~i~nr~~~~~~~Ea~~l~~~g~~-~~~~id~~~~~~~g~~~~~~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~~l~ 263 (311)
T PRK06130 185 FIANRIQHALAREAISLLEKGVA-SAEDIDEVVKWSLGIRLALTGPLEQRDMNGLDVHLAVASYLYQDLENRTTPSPLLE 263 (311)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCccCCCHHHHhhhhccchHHHHHHHHHHhcCCcCCCCHHHH
Confidence 48999999999999999999999 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHH-------HcCCCCCCCCCCC
Q 004891 703 ERA-------TKGIPLSAPVSSS 718 (725)
Q Consensus 703 ~~~-------~~g~gf~~~~~~~ 718 (725)
+|+ |+|+|||+|++..
T Consensus 264 ~~~~~g~~G~~~g~gfy~y~~~~ 286 (311)
T PRK06130 264 EKVEAGELGAKSGQGFYAWPPER 286 (311)
T ss_pred HHHHcCCccccCCCcCccCCCCC
Confidence 999 8899999997654
No 137
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.52 E-value=1.9e-14 Score=138.42 Aligned_cols=148 Identities=18% Similarity=0.151 Sum_probs=100.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (725)
|+||+|||+|.||++||.+|+++|++|++||+++++.++..+ . ......++ +.++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~-----------~-------------g~~~~~s~~e~~~ 56 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAE-----------A-------------GAEVADSPAEAAE 56 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHH-----------T-------------TEEEESSHHHHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHH-----------h-------------hhhhhhhhhhHhh
Confidence 689999999999999999999999999999999998777542 1 24445555 6678
Q ss_pred CCCEEEEeccCChHHHHHHHHH--HHHhCCCCeEEEecCCCCChH---HHhcccCCCCcEEEEecCCCCCC--------C
Q 004891 387 DVDMVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHV--------M 453 (725)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~--l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~p~~~--------~ 453 (725)
+||+||.|+|++.+++ +++.. +.+.++++.+++. +|+..++ ++++.+... |.||.+.|.. +
T Consensus 57 ~~dvvi~~v~~~~~v~-~v~~~~~i~~~l~~g~iiid-~sT~~p~~~~~~~~~~~~~----g~~~vdapV~Gg~~~a~~g 130 (163)
T PF03446_consen 57 QADVVILCVPDDDAVE-AVLFGENILAGLRPGKIIID-MSTISPETSRELAERLAAK----GVRYVDAPVSGGPPGAEEG 130 (163)
T ss_dssp HBSEEEE-SSSHHHHH-HHHHCTTHGGGS-TTEEEEE--SS--HHHHHHHHHHHHHT----TEEEEEEEEESHHHHHHHT
T ss_pred cccceEeecccchhhh-hhhhhhHHhhccccceEEEe-cCCcchhhhhhhhhhhhhc----cceeeeeeeeccccccccc
Confidence 9999999999666654 55555 8888899998875 4444444 333333222 3455443322 2
Q ss_pred CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEE-EcC
Q 004891 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVV-VGN 488 (725)
Q Consensus 454 ~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~-v~d 488 (725)
.+.-++.| +++++++++++++.+|+++++ +++
T Consensus 131 ~l~~~~gG---~~~~~~~~~~~l~~~~~~v~~~~G~ 163 (163)
T PF03446_consen 131 TLTIMVGG---DEEAFERVRPLLEAMGKNVYHYVGP 163 (163)
T ss_dssp TEEEEEES----HHHHHHHHHHHHHHEEEEEEE-ES
T ss_pred ceEEEccC---CHHHHHHHHHHHHHHhCCceeeeCc
Confidence 34445555 589999999999999998884 354
No 138
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.51 E-value=6.6e-13 Score=138.04 Aligned_cols=153 Identities=16% Similarity=0.222 Sum_probs=126.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC----cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-c
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~----~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (725)
+||+|||+|+||.+|+..|.++|+ +|+++|+++++++.+.+. .| +..+++. +
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~----------~g-------------~~~~~~~~e 59 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK----------YG-------------ITITTNNNE 59 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh----------cC-------------cEEeCCcHH
Confidence 479999999999999999999885 699999999886654321 11 2223333 5
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEe-cCC
Q 004891 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTE 462 (725)
Q Consensus 384 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii-~~~ 462 (725)
.+.+||+||.|++ ++...++++++.+.++++++|+|...++++..+...+....+++...|+.|...+..+..+ +++
T Consensus 60 ~~~~aDiIiLavk--P~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~ 137 (272)
T PRK12491 60 VANSADILILSIK--PDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNE 137 (272)
T ss_pred HHhhCCEEEEEeC--hHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCC
Confidence 5789999999999 5778888899998888899999999999999999988766689999999999888777765 567
Q ss_pred CCCHHHHHHHHHHHHHcCCeeEEEc
Q 004891 463 RTSAQVILDLMTVGKIIKKVPVVVG 487 (725)
Q Consensus 463 ~t~~e~~~~~~~l~~~lGk~~v~v~ 487 (725)
..+++..+.+..++..+|+.. ++.
T Consensus 138 ~~~~~~~~~v~~lf~~~G~~~-~~~ 161 (272)
T PRK12491 138 MVTEKDIKEVLNIFNIFGQTE-VVN 161 (272)
T ss_pred CCCHHHHHHHHHHHHcCCCEE-EEc
Confidence 788999999999999999874 444
No 139
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.51 E-value=7.2e-13 Score=138.32 Aligned_cols=188 Identities=18% Similarity=0.182 Sum_probs=135.8
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCC---CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-c
Q 004891 308 VRKVAVIGGGLMGSGIATAHILNN---IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~G---~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (725)
|+||+|||+|.||.+++..+.++| ++|.+||+++++.++..+.+ + +..+.+. +
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~----------g-------------~~~~~~~~~ 58 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY----------G-------------VRAATDNQE 58 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc----------C-------------CeecCChHH
Confidence 568999999999999999999999 78999999998866543210 1 1222333 4
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeee-EecCC
Q 004891 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTE 462 (725)
Q Consensus 384 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lve-ii~~~ 462 (725)
.+.+||+||+|+| .....++++++.+.+ +++|+|.+++++...+...+....+++.+||..|......+. ++++.
T Consensus 59 ~~~~advVil~v~--~~~~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~ 134 (267)
T PRK11880 59 AAQEADVVVLAVK--PQVMEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANA 134 (267)
T ss_pred HHhcCCEEEEEcC--HHHHHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCC
Confidence 5688999999998 666778888887766 467778888999888887776566899999988877666555 45677
Q ss_pred CCCHHHHHHHHHHHHHcCCeeEEEcCC--cchh-hh----hhhHHHHHHHHHH-HHcCCCHHHHHHHH
Q 004891 463 RTSAQVILDLMTVGKIIKKVPVVVGNC--TGFA-VN----RAFFPYSQSARLL-VSLGVDVFRIDSAI 522 (725)
Q Consensus 463 ~t~~e~~~~~~~l~~~lGk~~v~v~d~--~Gfi-~n----Rl~~a~~~Ea~~l-~~~Gv~~~dID~~~ 522 (725)
.++++..+.++.+++.+|..+++..+. .... .. -+++.++...... .+.|+++++...++
T Consensus 135 ~~~~~~~~~v~~l~~~lG~~~~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~ 202 (267)
T PRK11880 135 LVSAEDRELVENLLSAFGKVVWVDDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLA 202 (267)
T ss_pred CCCHHHHHHHHHHHHhCCeEEEECChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 789999999999999999754443221 1111 11 1223344344443 34689998877766
No 140
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.49 E-value=6.4e-13 Score=139.41 Aligned_cols=189 Identities=14% Similarity=0.143 Sum_probs=134.4
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCC----CcEEEEeCChH-HHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccC
Q 004891 307 GVRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD 381 (725)
Q Consensus 307 ~~~kIaVIG~G~mG~~iA~~l~~~G----~~V~~~d~~~e-~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 381 (725)
+.+||+|||+|.||.+|+..|.++| ++|+++|++++ .++.... ..| +..+.+
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~----------~~g-------------~~~~~~ 58 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQ----------KYG-------------VKGTHN 58 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHH----------hcC-------------ceEeCC
Confidence 3468999999999999999999998 78999999764 4333211 001 222333
Q ss_pred c-ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeE-e
Q 004891 382 Y-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEI-V 459 (725)
Q Consensus 382 ~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lvei-i 459 (725)
. +.+.+||+||.||| ++...+++.++.+.+.++++|+|..++++++.+.........+++.||+.|......+.+ +
T Consensus 59 ~~e~~~~aDvVilav~--p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~ 136 (279)
T PRK07679 59 KKELLTDANILFLAMK--PKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAIS 136 (279)
T ss_pred HHHHHhcCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEe
Confidence 3 55789999999999 666667788888888888899888889999888887765567999999776655444444 4
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCc-----chhh--hhhhHHHHHHHHH--HHHcCCCHHHHHHHH
Q 004891 460 RTERTSAQVILDLMTVGKIIKKVPVVVGNCT-----GFAV--NRAFFPYSQSARL--LVSLGVDVFRIDSAI 522 (725)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~-----Gfi~--nRl~~a~~~Ea~~--l~~~Gv~~~dID~~~ 522 (725)
+++..+++..+.+++++..+|+.. ++.+.. |... ..+++ ++.|++. ....|+++++...++
T Consensus 137 ~~~~~~~~~~~~v~~l~~~~G~~~-~v~e~~~~~~~a~~Gsgpa~~~-~~~eal~e~~~~~Gl~~~~a~~~~ 206 (279)
T PRK07679 137 PSKHATAEHIQTAKALFETIGLVS-VVEEEDMHAVTALSGSGPAYIY-YVVEAMEKAAKKIGLKEDVAKSLI 206 (279)
T ss_pred eCCCCCHHHHHHHHHHHHhCCcEE-EeCHHHhhhHHHhhcCHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 777788999999999999999855 433211 1000 12222 3334332 445699999988887
No 141
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.48 E-value=1.5e-13 Score=144.93 Aligned_cols=182 Identities=19% Similarity=0.131 Sum_probs=126.5
Q ss_pred EEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccCCCEE
Q 004891 313 VIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMV 391 (725)
Q Consensus 313 VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aDlV 391 (725)
|||+|.||.+||.+|+++|++|++||+++++++... +.| +..+++. +.+++||+|
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g-------------~~~~~s~~~~~~~advV 56 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAV-----------AAG-------------AQAAASPAEAAEGADRV 56 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHH-----------HcC-------------CeecCCHHHHHhcCCEE
Confidence 689999999999999999999999999998876542 112 1223344 567899999
Q ss_pred EEeccCChHHHHHHH--HHHHHhCCCCeEEEecCCCCChHHH---hcccCCCCcEEEEecCCCCCCC--------CeeeE
Q 004891 392 IEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLNIV---GEKTSSQDRIIGAHFFSPAHVM--------PLLEI 458 (725)
Q Consensus 392 Ieavpe~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~~l---~~~~~~~~r~ig~h~~~p~~~~--------~lvei 458 (725)
|.|||.+..+...++ ..+.+.+++++++++. |++.+... .+.+.. .|.+|.+.|..+ .+.-+
T Consensus 57 il~vp~~~~~~~v~~g~~~l~~~~~~g~~vid~-st~~p~~~~~~~~~~~~----~g~~~vdaPv~Gg~~~a~~g~l~~~ 131 (288)
T TIGR01692 57 ITMLPAGQHVISVYSGDEGILPKVAKGSLLIDC-STIDPDSARKLAELAAA----HGAVFMDAPVSGGVGGARAGTLTFM 131 (288)
T ss_pred EEeCCChHHHHHHHcCcchHhhcCCCCCEEEEC-CCCCHHHHHHHHHHHHH----cCCcEEECCCCCCHHHHhhCcEEEE
Confidence 999996665544433 5677778888888754 46555433 233221 144555433322 23333
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-Ccch---hhhhhhH----HHHHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 004891 459 VRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTGF---AVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI-RSFG 526 (725)
Q Consensus 459 i~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~Gf---i~nRl~~----a~~~Ea~~l~~~-Gv~~~dID~~~-~~~G 526 (725)
+.| +++.+++++++++.+|+.++++++ ..|. ++|+++. ..+.|++.+.+. |++++++..++ .+.|
T Consensus 132 ~gg---~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~ 206 (288)
T TIGR01692 132 VGG---VAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSG 206 (288)
T ss_pred ECC---CHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCc
Confidence 444 578999999999999999999986 3443 4455533 245699988876 89999999998 5544
No 142
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.48 E-value=2.4e-12 Score=134.86 Aligned_cols=151 Identities=19% Similarity=0.198 Sum_probs=110.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891 310 KVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (725)
Q Consensus 310 kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (725)
||+|||+|.||+++|..|.++|+ +|++||++++.++.+. +.|.. ....+.+.+.+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~-----------~~g~~------------~~~~~~~~~~~ 58 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL-----------ELGLV------------DEIVSFEELKK 58 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH-----------HCCCC------------cccCCHHHHhc
Confidence 79999999999999999999996 7899999998866542 22211 11223333446
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccC--CCCcEEEEecCCC------CC------CC
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS--SQDRIIGAHFFSP------AH------VM 453 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~--~~~r~ig~h~~~p------~~------~~ 453 (725)
||+||.|+| .....+++.++.+ ++++++|++.+|+ ... +.+.+. .+.+|++.||+.+ .. .+
T Consensus 59 aD~Vilavp--~~~~~~~~~~l~~-l~~~~iv~d~gs~-k~~-i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g 133 (275)
T PRK08507 59 CDVIFLAIP--VDAIIEILPKLLD-IKENTTIIDLGST-KAK-IIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEG 133 (275)
T ss_pred CCEEEEeCc--HHHHHHHHHHHhc-cCCCCEEEECccc-hHH-HHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCC
Confidence 999999999 5666778888888 8889988875443 222 222111 2357999999742 21 24
Q ss_pred CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004891 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (725)
Q Consensus 454 ~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d 488 (725)
..+.+++++.++++.++.++++++.+|..++.+.+
T Consensus 134 ~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~ 168 (275)
T PRK08507 134 KVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMDA 168 (275)
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeCH
Confidence 45667788788999999999999999999999853
No 143
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.47 E-value=3.7e-13 Score=149.36 Aligned_cols=189 Identities=13% Similarity=0.145 Sum_probs=126.9
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-c--
Q 004891 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S-- 383 (725)
Q Consensus 307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~-- 383 (725)
.+.+|||||+|.||.+||.+|+++|++|++|||++++.+...+.. ...|. ..+....++ +
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~-------~~~Ga----------~~~~~a~s~~e~v 67 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGN----------LPLYGFKDPEDFV 67 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhh-------hhcCC----------cccccCCCHHHHH
Confidence 356899999999999999999999999999999999887654310 00021 011123333 2
Q ss_pred -cccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhcccCCCCcEEEEecCCCCC--------C
Q 004891 384 -EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAH--------V 452 (725)
Q Consensus 384 -~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~~~r~ig~h~~~p~~--------~ 452 (725)
.++.+|+||.|||.+..+.. ++..+.+.+.++.||++.+++.+.. .+.+.+... |+||+..|. .
T Consensus 68 ~~l~~~dvIi~~v~~~~aV~~-Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~----Gi~fldapVSGG~~gA~~ 142 (493)
T PLN02350 68 LSIQKPRSVIILVKAGAPVDQ-TIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEK----GLLYLGMGVSGGEEGARN 142 (493)
T ss_pred hcCCCCCEEEEECCCcHHHHH-HHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHc----CCeEEeCCCcCCHHHhcC
Confidence 34459999999997777654 4477888888999887654443322 333333211 555554332 2
Q ss_pred CCeeeEecCCCCCHHHHHHHHHHHHHcCCe------eEEEcCCcc--h---hh-hhhhH---HHHHHHHHHHHc--CCCH
Q 004891 453 MPLLEIVRTERTSAQVILDLMTVGKIIKKV------PVVVGNCTG--F---AV-NRAFF---PYSQSARLLVSL--GVDV 515 (725)
Q Consensus 453 ~~lveii~~~~t~~e~~~~~~~l~~~lGk~------~v~v~d~~G--f---i~-nRl~~---a~~~Ea~~l~~~--Gv~~ 515 (725)
++ .++.|. +++++++++++++.++.+ ++++++ +| . ++ |-+.+ ..+.|++.+++. |+++
T Consensus 143 G~--~im~GG--~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~-~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~ 217 (493)
T PLN02350 143 GP--SLMPGG--SFEAYKNIEDILEKVAAQVDDGPCVTYIGP-GGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSN 217 (493)
T ss_pred CC--eEEecC--CHHHHHHHHHHHHHHhhhcCCCCcEEEeCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCH
Confidence 23 345544 699999999999999954 788886 33 2 33 44433 334599988865 8999
Q ss_pred HHHHHHH
Q 004891 516 FRIDSAI 522 (725)
Q Consensus 516 ~dID~~~ 522 (725)
+++-.++
T Consensus 218 ~~l~~vf 224 (493)
T PLN02350 218 EELAEVF 224 (493)
T ss_pred HHHHHHH
Confidence 9999885
No 144
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.46 E-value=2.7e-13 Score=154.75 Aligned_cols=167 Identities=22% Similarity=0.262 Sum_probs=131.8
Q ss_pred cCcEEEEEeCCC--C-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC---CCCCcCCCCchhhhhccCCCcccccchh
Q 004891 12 NDGVAIITLINP--P-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN---GGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (725)
Q Consensus 12 ~~~v~~i~l~~p--~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~---g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (725)
+++|++|+++.+ + .|..+....+.+.+.|+.+..|++||+|||+-. |..||+ . .
T Consensus 307 ~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as----e----------------~ 366 (584)
T TIGR00705 307 QDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS----E----------------I 366 (584)
T ss_pred CCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH----H----------------H
Confidence 678999999877 2 344444456788899999999999999999843 233432 1 1
Q ss_pred HHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceE------eCcc------cccCCCCCchhhchHhh-
Q 004891 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL------GLPE------LTLGVIPGFGGTQRLPR- 152 (725)
Q Consensus 86 ~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~------~~pe------~~~Gl~p~~g~~~~l~r- 152 (725)
..+.+ ..+...+|||||.++|.|.+||+.++++||.++|++.+.+ +.+. .++|+.|....+..+..
T Consensus 367 i~~~i-~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~ 445 (584)
T TIGR00705 367 IRREL-ARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANV 445 (584)
T ss_pred HHHHH-HHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCC
Confidence 12333 3466788999999999999999999999999999999877 5553 58999988777766554
Q ss_pred ---------------------------hhCHHH-----HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHH
Q 004891 153 ---------------------------LVGLSK-----AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDI 200 (725)
Q Consensus 153 ---------------------------~vG~~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l 200 (725)
.|+..+ +.+.+.+|+.+++++|+++||||++- .+ +.+.+.|.++
T Consensus 446 s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig---~~-~~Ai~~a~~l 521 (584)
T TIGR00705 446 SLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALG---GL-DEAVAKAAKL 521 (584)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCC---CH-HHHHHHHHHH
Confidence 677666 78899999999999999999999994 44 7777888888
Q ss_pred Hhc
Q 004891 201 AAR 203 (725)
Q Consensus 201 a~~ 203 (725)
+..
T Consensus 522 a~~ 524 (584)
T TIGR00705 522 AHC 524 (584)
T ss_pred cCC
Confidence 887
No 145
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.46 E-value=1.3e-12 Score=141.69 Aligned_cols=167 Identities=18% Similarity=0.157 Sum_probs=118.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (725)
++|+|||+|.||++||..|.++|++|.+|+++++..+.... ...+..+ ..+++. +.+++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a---------~~~~~~~-----------~~~~~~~~~~~~ 60 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARA---------LGFGVID-----------ELAADLQRAAAE 60 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHH---------hcCCCCc-----------ccccCHHHHhcC
Confidence 47999999999999999999999999999998776443211 1112111 112333 45789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHH-hCCCCeEEEecCCCC--ChHHHhcccCCCCcEEEEecCCCC------------CC
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPA------------HV 452 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~-~~~~~~ii~s~tS~~--~~~~l~~~~~~~~r~ig~h~~~p~------------~~ 452 (725)
||+||+|+| ......+++++.+ .++++++|++.+|+. .+..+........+|++.||+... ..
T Consensus 61 aDlVilavP--~~~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~ 138 (359)
T PRK06545 61 ADLIVLAVP--VDATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFE 138 (359)
T ss_pred CCEEEEeCC--HHHHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHC
Confidence 999999999 5567899999987 478898887655542 233444444556789999986432 12
Q ss_pred CCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc-CCcchhhhhh
Q 004891 453 MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG-NCTGFAVNRA 497 (725)
Q Consensus 453 ~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~-d~~Gfi~nRl 497 (725)
+...-+++++.++++.++.++++++.+|..++++. +....++..+
T Consensus 139 g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~v 184 (359)
T PRK06545 139 NAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVALV 184 (359)
T ss_pred CCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHh
Confidence 23355778888999999999999999999999884 3444444443
No 146
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.45 E-value=1.8e-13 Score=160.56 Aligned_cols=88 Identities=25% Similarity=0.301 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHH
Q 004891 623 EIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLE 702 (725)
Q Consensus 623 ~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~ 702 (725)
.|.||++.+++|||++++++|+ +++|||.+++ ++|||+ |||+++|.+|+|.+.++++.+.+.++++|.|+++++
T Consensus 494 fi~nRl~~~~~~EA~~lv~eGv--~~~dID~a~~-~~G~p~---GPf~~~D~~Gld~~~~i~~~l~~~~~~~~~~~~~l~ 567 (708)
T PRK11154 494 FYVNRILAPYINEAARLLLEGE--PIEHIDAALV-KFGFPV---GPITLLDEVGIDVGTKIIPILEAALGERFSAPAAFD 567 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHH-HcCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 5999999999999999999997 6999999998 899998 999999999999999999999999999999999999
Q ss_pred HHH-------HcCCCCCCCCC
Q 004891 703 ERA-------TKGIPLSAPVS 716 (725)
Q Consensus 703 ~~~-------~~g~gf~~~~~ 716 (725)
+|+ |+|+|||+|++
T Consensus 568 ~~v~~g~~G~k~g~GfY~y~~ 588 (708)
T PRK11154 568 KLLNDDRKGRKNGRGFYLYGQ 588 (708)
T ss_pred HHHHCCCCcccCCceEEECCC
Confidence 998 78999999964
No 147
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.44 E-value=5.1e-13 Score=134.15 Aligned_cols=155 Identities=27% Similarity=0.308 Sum_probs=106.6
Q ss_pred cEEEEEeC-----CCC-CCC-CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhH
Q 004891 14 GVAIITLI-----NPP-VNA-LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVS 86 (725)
Q Consensus 14 ~v~~i~l~-----~p~-~Na-l~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 86 (725)
+|++|.++ +|. .|+ ++..++.+|.++|+.+++|+++++|||+. +|.|+++....
T Consensus 1 ~v~vi~~~g~i~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~----~s~gg~~~~~~--------------- 61 (214)
T cd07022 1 GVAVIPVHGVLVPRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI----DSPGGEVAGVF--------------- 61 (214)
T ss_pred CEEEEEEEEEEeCCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE----eCCCCcHHHHH---------------
Confidence 35566554 332 354 45789999999999999999999999975 56666654321
Q ss_pred HHHHHHHHhhC--CCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccc------------cCCCCCc--------
Q 004891 87 VELVVNLIEDC--KKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPGF-------- 144 (725)
Q Consensus 87 ~~~~~~~l~~~--~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~------------~Gl~p~~-------- 144 (725)
.+. +.|..+ +|||||+++|.|.|+|+.|+++||+++|++++.|+...+. +|+-+..
T Consensus 62 -~l~-~~l~~~~~~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~ 139 (214)
T cd07022 62 -ELA-DAIRAARAGKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKV 139 (214)
T ss_pred -HHH-HHHHHHhcCCCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCcc
Confidence 122 334444 5999999999999999999999999999999988654332 2321110
Q ss_pred ------hhh----chH-----------------hhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHH
Q 004891 145 ------GGT----QRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191 (725)
Q Consensus 145 ------g~~----~~l-----------------~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~ 191 (725)
..+ ..+ .|-+......+++ |..+++++|++.||||++...+++..
T Consensus 140 ~~~~~~~~s~~~re~~~~~l~~~~~~f~~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~~~~~~ 211 (214)
T cd07022 140 DGNPDEPLSDEARARLQAEVDALYAMFVAAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGTLDDALA 211 (214)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCHHHHHH
Confidence 000 001 1222334444555 99999999999999999987666543
No 148
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.44 E-value=2.2e-13 Score=159.30 Aligned_cols=91 Identities=25% Similarity=0.291 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHH
Q 004891 621 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRF 700 (725)
Q Consensus 621 ~~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~ 700 (725)
.--|.||++.+++|||++++++|+ +++|||.+++ ++|||+ |||+++|.+|+|.++++++.+.+.++++|.|+++
T Consensus 487 pGfi~nRl~~~~~~Ea~~l~~~G~--~~~dID~a~~-~~G~p~---GPf~l~D~vGld~~~~i~~~l~~~~~~~~~~~~~ 560 (699)
T TIGR02440 487 AGFYVNRILAPYMNEAARLLLEGE--PVEHIDKALV-KFGFPV---GPITLLDEVGIDVGAKISPILEAELGERFKAPAV 560 (699)
T ss_pred cchHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHH-HcCCCc---CHHHHHHHhchHHHHHHHHHHHHhcCCCCCCcHH
Confidence 347999999999999999999995 7999999996 999999 9999999999999999999999999999999999
Q ss_pred HHHHH-------HcCCCCCCCCCC
Q 004891 701 LEERA-------TKGIPLSAPVSS 717 (725)
Q Consensus 701 l~~~~-------~~g~gf~~~~~~ 717 (725)
|++|+ |+|+|||+|++.
T Consensus 561 l~~~v~~G~lG~ksg~GfY~y~~~ 584 (699)
T TIGR02440 561 FDKLLSDDRKGRKNGKGFYLYGAA 584 (699)
T ss_pred HHHHHHCCCCcccCCcEEEeCCCC
Confidence 99998 789999999643
No 149
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.44 E-value=1.6e-12 Score=136.82 Aligned_cols=182 Identities=18% Similarity=0.172 Sum_probs=122.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccCC
Q 004891 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV 388 (725)
Q Consensus 310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~a 388 (725)
||+|||+|.||.+||.+|.++|++|++||+++. .+.. .+.| .....+. +.+++|
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~-----------~~~g-------------~~~~~s~~~~~~~a 56 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADEL-----------LSLG-------------AVSVETARQVTEAS 56 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHH-----------HHcC-------------CeecCCHHHHHhcC
Confidence 799999999999999999999999999999864 2221 1122 1112233 567899
Q ss_pred CEEEEeccCChHHHHHHHHH--HHHhCCCCeEEEecCCCCChH---HHhcccC-CCCcEEEEecCCCC----CCCCeeeE
Q 004891 389 DMVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDLN---IVGEKTS-SQDRIIGAHFFSPA----HVMPLLEI 458 (725)
Q Consensus 389 DlVIeavpe~~~~k~~v~~~--l~~~~~~~~ii~s~tS~~~~~---~l~~~~~-~~~r~ig~h~~~p~----~~~~lvei 458 (725)
|+||.|||++..++..++.. +.+.+.++.+++.. ||..+. ++++.+. +..+|+. +|+... ..+.+.-+
T Consensus 57 dvVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~-sT~~p~~~~~~~~~~~~~G~~~vd-aPVsGg~~~a~~g~l~~~ 134 (292)
T PRK15059 57 DIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDM-SSISPIETKRFARQVNELGGDYLD-APVSGGEIGAREGTLSIM 134 (292)
T ss_pred CEEEEeCCChHHHHHHHcCCcchhccCCCCCEEEEC-CCCCHHHHHHHHHHHHHcCCCEEE-ecCCCCHHHHhcCcEEEE
Confidence 99999999887776666542 55667788887654 454444 3333332 3334555 233211 11222223
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcc-----hhhhhhhH----HHHHHHHHHHHc-CCCHHHHHHHH
Q 004891 459 VRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG-----FAVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI 522 (725)
Q Consensus 459 i~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G-----fi~nRl~~----a~~~Ea~~l~~~-Gv~~~dID~~~ 522 (725)
+.| +++++++++++++.+|+.++++++. | .++|.++. ..+.|++.+.+. |++++.+-.++
T Consensus 135 ~gG---~~~~~~~~~p~l~~~g~~~~~~G~~-G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l 204 (292)
T PRK15059 135 VGG---DEAVFERVKPLFELLGKNITLVGGN-GDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQAL 204 (292)
T ss_pred EcC---CHHHHHHHHHHHHHHcCCcEEeCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 333 6899999999999999999999873 4 23455432 234689888766 89999977777
No 150
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.44 E-value=5.7e-13 Score=127.93 Aligned_cols=135 Identities=25% Similarity=0.268 Sum_probs=105.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEEcc
Q 004891 28 LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEG 107 (725)
Q Consensus 28 l~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G 107 (725)
+++.++++|.+.|+.++.|+++++|+|.. .|.|+|+... ..+. +.|..++||||+.++|
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~----~s~Gg~~~~~----------------~~i~-~~l~~~~kpvva~~~g 66 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEV----NTPGGRVDAG----------------MNIV-DALQASRKPVIAYVGG 66 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEE----ECCCcCHHHH----------------HHHH-HHHHHhCCCEEEEECC
Confidence 56688999999999999999999999975 4667765432 2344 5677899999999999
Q ss_pred cccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhh-------------chHh------hhhCHHHHHHHHHcCCC
Q 004891 108 LALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGT-------------QRLP------RLVGLSKAIEMMLLSKS 168 (725)
Q Consensus 108 ~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~-------------~~l~------r~vG~~~a~~l~l~g~~ 168 (725)
.|.++|+.|+++||.|++.+++.|++..+..+.....+-. ..+. |.+......+++..|..
T Consensus 67 ~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~ 146 (161)
T cd00394 67 QAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLV 146 (161)
T ss_pred hhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcE
Confidence 9999999999999999999999999988876654321000 1111 22244456788889999
Q ss_pred CCHHHHHHcCCccee
Q 004891 169 ITSEEGWKLGLIDAV 183 (725)
Q Consensus 169 ~~a~eA~~~Glv~~v 183 (725)
++|+||++.||||++
T Consensus 147 ~~a~eA~~~GLvD~i 161 (161)
T cd00394 147 LTAQEALEYGLVDAL 161 (161)
T ss_pred EcHHHHHHcCCcCcC
Confidence 999999999999975
No 151
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.44 E-value=1.7e-12 Score=144.00 Aligned_cols=192 Identities=13% Similarity=0.085 Sum_probs=130.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cc---
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE--- 384 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~--- 384 (725)
.+|+|||+|.||++||.+|+++|++|++||+++++++...+.. ...|. .+..++++ +.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~-----------~i~~~~s~~e~v~~ 63 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKA-------KEGNT-----------RVKGYHTLEELVNS 63 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhh-------hhcCC-----------cceecCCHHHHHhc
Confidence 5799999999999999999999999999999999987754311 01121 12233444 22
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCe------eeE
Q 004891 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPL------LEI 458 (725)
Q Consensus 385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~l------vei 458 (725)
++++|+||.+||... ..+++++++.+.+.++.||++.+++.+...........+ .|+||+..|..+.. --+
T Consensus 64 l~~~d~Iil~v~~~~-~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~--~Gi~fldapVSGG~~gA~~G~~l 140 (470)
T PTZ00142 64 LKKPRKVILLIKAGE-AVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEE--KGILYLGMGVSGGEEGARYGPSL 140 (470)
T ss_pred CCCCCEEEEEeCChH-HHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCeEEcCCCCCCHHHHhcCCEE
Confidence 346899999998554 445667889999999999987766655443322211111 16677654433311 124
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCCe------eEEEcC-Ccch----hhhhhhHH---HHHHHHHHHH--cCCCHHHHHHHH
Q 004891 459 VRTERTSAQVILDLMTVGKIIKKV------PVVVGN-CTGF----AVNRAFFP---YSQSARLLVS--LGVDVFRIDSAI 522 (725)
Q Consensus 459 i~~~~t~~e~~~~~~~l~~~lGk~------~v~v~d-~~Gf----i~nRl~~a---~~~Ea~~l~~--~Gv~~~dID~~~ 522 (725)
+.|. +++++++++++++.++.+ ..++++ ..|. +.|-+.++ .+.|++.+++ .|++++++-.++
T Consensus 141 m~GG--~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~ 218 (470)
T PTZ00142 141 MPGG--NKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVF 218 (470)
T ss_pred EEeC--CHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Confidence 5544 699999999999999987 677775 2232 23445433 3459999986 489999998887
Q ss_pred H
Q 004891 523 R 523 (725)
Q Consensus 523 ~ 523 (725)
.
T Consensus 219 ~ 219 (470)
T PTZ00142 219 N 219 (470)
T ss_pred H
Confidence 4
No 152
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.44 E-value=2.2e-12 Score=133.41 Aligned_cols=156 Identities=17% Similarity=0.210 Sum_probs=117.8
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChH--HHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccC--cc
Q 004891 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE--YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--YS 383 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e--~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~--~~ 383 (725)
+++|+|+|+|.||+++|..+.++|+.|.+++++.. .++.+ .+.|.++. .+.+ .+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a-----------~~lgv~d~-----------~~~~~~~~ 60 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAA-----------LELGVIDE-----------LTVAGLAE 60 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHH-----------hhcCcccc-----------cccchhhh
Confidence 57899999999999999999999998866666544 33332 12332221 1122 35
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhcccCCCCcEEEEecCCCCC------CCCe
Q 004891 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAH------VMPL 455 (725)
Q Consensus 384 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~p~~------~~~l 455 (725)
.+.++|+||.||| +....++++++.+.++++++|++.+|+.. +..+........+|+|.||...+. ....
T Consensus 61 ~~~~aD~VivavP--i~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~ 138 (279)
T COG0287 61 AAAEADLVIVAVP--IEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAV 138 (279)
T ss_pred hcccCCEEEEecc--HHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCE
Confidence 6788999999999 99999999999999999999998777533 344444443322899999976662 2345
Q ss_pred eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004891 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (725)
Q Consensus 456 veii~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 487 (725)
+-+++++.++.+.++.++++++.+|..++.+.
T Consensus 139 ~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~ 170 (279)
T COG0287 139 VVLTPSEGTEKEWVEEVKRLWEALGARLVEMD 170 (279)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 66778888899999999999999999998884
No 153
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.43 E-value=6.7e-12 Score=138.49 Aligned_cols=196 Identities=16% Similarity=0.167 Sum_probs=127.5
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHH--------HHHHHHhhHHcCCCCHHHHHHhhcCccc
Q 004891 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT--------IEANVRGLVTRGKLTQDKANNALKMLKG 378 (725)
Q Consensus 307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~--------i~~~l~~~~~~g~~~~~~~~~~~~~i~~ 378 (725)
.++||+|||+|.||.++|..|+++|++|++||+++++++..... +...+.+.++ .+++..
T Consensus 2 ~~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~------------~g~l~~ 69 (415)
T PRK11064 2 SFETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVE------------GGYLRA 69 (415)
T ss_pred CccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhh------------cCceee
Confidence 36899999999999999999999999999999999988763211 1111111111 133444
Q ss_pred ccCcccccCCCEEEEeccCC--------hHHHHHHHHHHHHhCCCCeEEEecCCCCChH---HHhcccCC-------C--
Q 004891 379 VLDYSEFKDVDMVIEAVIES--------VPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSS-------Q-- 438 (725)
Q Consensus 379 ~~~~~~l~~aDlVIeavpe~--------~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~-------~-- 438 (725)
+++ +++||+||.|||.+ +.....+.+.+.++++++++|+.. ||.++. .+...+.. +
T Consensus 70 ~~~---~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~-STv~pgtt~~~~~~l~~~~~~~~~~~~ 145 (415)
T PRK11064 70 TTT---PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILE-STSPVGATEQMAEWLAEARPDLTFPQQ 145 (415)
T ss_pred ecc---cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEe-CCCCCCHHHHHHHHHHHhccCCccccc
Confidence 443 45899999999964 356667778899999999987643 333332 22221110 0
Q ss_pred ----CcEEEEecCCCCCCC--Cee-------eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-----Ccchhhhhhh--
Q 004891 439 ----DRIIGAHFFSPAHVM--PLL-------EIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-----CTGFAVNRAF-- 498 (725)
Q Consensus 439 ----~r~ig~h~~~p~~~~--~lv-------eii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-----~~Gfi~nRl~-- 498 (725)
..|.-. ++|-... ..+ -++.| .+++..+.++++++.+++.++++++ ...++.|-++
T Consensus 146 ~g~~~~f~v~--~~PE~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~ 221 (415)
T PRK11064 146 AGEQADINIA--YCPERVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDV 221 (415)
T ss_pred ccCCCCeEEE--ECCCccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHH
Confidence 011111 2331111 111 34544 3789999999999999988777764 1123445432
Q ss_pred -HHHHHHHHHHHHc-CCCHHHHHHHH
Q 004891 499 -FPYSQSARLLVSL-GVDVFRIDSAI 522 (725)
Q Consensus 499 -~a~~~Ea~~l~~~-Gv~~~dID~~~ 522 (725)
.+++||+..+.+. |+++.++-.++
T Consensus 222 ~ia~~nE~~~lae~~GiD~~~v~~~~ 247 (415)
T PRK11064 222 NIAFANELSLICADQGINVWELIRLA 247 (415)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHh
Confidence 5788999888877 99999988887
No 154
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.43 E-value=3.9e-12 Score=134.62 Aligned_cols=187 Identities=9% Similarity=0.029 Sum_probs=122.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccCC
Q 004891 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV 388 (725)
Q Consensus 310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~a 388 (725)
||+|||+|.||.+||..|+++|++|++||+++++++...+ .+... .....+. +.+.++
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~-----------~g~~~----------~~s~~~~~~~~~~~ 60 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKE-----------DRTTG----------VANLRELSQRLSAP 60 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------cCCcc----------cCCHHHHHhhcCCC
Confidence 7999999999999999999999999999999998766532 12110 0000111 345679
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhcccC-CCCcEEEEecCCCCCC--CCeeeEecCCC
Q 004891 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPAHV--MPLLEIVRTER 463 (725)
Q Consensus 389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~-~~~r~ig~h~~~p~~~--~~lveii~~~~ 463 (725)
|+||.|+|.+ ..++++.++.+.++++.+|++.+++.+.+ .+...+. ...+|+..+....+.. ..+ -++.+.
T Consensus 61 dvIi~~vp~~--~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~-~~~~gG- 136 (298)
T TIGR00872 61 RVVWVMVPHG--IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGY-CFMIGG- 136 (298)
T ss_pred CEEEEEcCch--HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCC-eeeeCC-
Confidence 9999999965 66777889999999998888765554333 3223332 2223444332211110 012 233332
Q ss_pred CCHHHHHHHHHHHHHcCC---eeEEEcCC-cch----hhhhhhHHH---HHHHHHHHHc-C--CCHHHHHHHH
Q 004891 464 TSAQVILDLMTVGKIIKK---VPVVVGNC-TGF----AVNRAFFPY---SQSARLLVSL-G--VDVFRIDSAI 522 (725)
Q Consensus 464 t~~e~~~~~~~l~~~lGk---~~v~v~d~-~Gf----i~nRl~~a~---~~Ea~~l~~~-G--v~~~dID~~~ 522 (725)
++++++.++++++.++. ..+++++. .|. +.|-+.... +.|++.+++. | ++++++-.++
T Consensus 137 -~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~ 208 (298)
T TIGR00872 137 -DGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVW 208 (298)
T ss_pred -CHHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence 68999999999999996 46778763 222 224443332 3488888876 4 5999999998
No 155
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.42 E-value=5.5e-12 Score=139.83 Aligned_cols=154 Identities=18% Similarity=0.164 Sum_probs=118.6
Q ss_pred ceEEEEc-CCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891 309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (725)
Q Consensus 309 ~kIaVIG-~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (725)
+||+||| +|.||.++|..|.++|++|++||++++....... +.| +..+++. +.+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~----------~~g-------------v~~~~~~~e~~~ 57 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAK----------ELG-------------VEYANDNIDAAK 57 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHH----------HcC-------------CeeccCHHHHhc
Confidence 3799997 7999999999999999999999999877533211 111 1223333 5678
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhcccCCCCcEEEEecCC----CCCCCCeeeEec
Q 004891 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFS----PAHVMPLLEIVR 460 (725)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~~~r~ig~h~~~----p~~~~~lveii~ 460 (725)
+||+||.|+| ......++.++.+.++++++|++.+|+ .+...+.+......+|++.||+. |...+..+.+++
T Consensus 58 ~aDvVIlavp--~~~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p 135 (437)
T PRK08655 58 DADIVIISVP--INVTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTP 135 (437)
T ss_pred cCCEEEEecC--HHHHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEec
Confidence 9999999999 566678889999999999999877764 34445555554456899999764 334556677888
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004891 461 TERTSAQVILDLMTVGKIIKKVPVVVG 487 (725)
Q Consensus 461 ~~~t~~e~~~~~~~l~~~lGk~~v~v~ 487 (725)
++.++++.++.+.+++..+|..++.+.
T Consensus 136 ~~~~~~~~~~~v~~ll~~~G~~v~~~~ 162 (437)
T PRK08655 136 TEKRSNPWFDKVKNFLEKEGARVIVTS 162 (437)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 888899999999999999999998874
No 156
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.41 E-value=2.6e-12 Score=136.04 Aligned_cols=182 Identities=17% Similarity=0.117 Sum_probs=120.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc--
Q 004891 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK-- 386 (725)
Q Consensus 310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~-- 386 (725)
||+|||+|.||.+||.+|+++|++|++||+++++.+... +.| .....+. +.++
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g-------------~~~~~s~~~~~~~~ 57 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAG-----------KLG-------------ITARHSLEELVSKL 57 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-----------HCC-------------CeecCCHHHHHHhC
Confidence 799999999999999999999999999999998766532 112 1222333 2333
Q ss_pred -CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhcccCCCCcEEEEecCCCCCCCCee------e
Q 004891 387 -DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHVMPLL------E 457 (725)
Q Consensus 387 -~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~~~r~ig~h~~~p~~~~~lv------e 457 (725)
++|+||.|+|.+..+ ..++..+.+.++++.+++..+++.+.+ ++.+.+... |.+|.+.|..+... -
T Consensus 58 ~~advVi~~vp~~~~~-~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~----g~~~vdapV~G~~~~a~~g~~ 132 (299)
T PRK12490 58 EAPRTIWVMVPAGEVT-ESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAER----GIHYVDCGTSGGVWGLRNGYC 132 (299)
T ss_pred CCCCEEEEEecCchHH-HHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHc----CCeEEeCCCCCCHHHHhcCCe
Confidence 379999999966444 455677877788888887544433322 333333221 34555433332211 1
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCC---eeEEEcCCcc-----hhhhhh-hH---HHHHHHHHHHHc-C--CCHHHHHHHH
Q 004891 458 IVRTERTSAQVILDLMTVGKIIKK---VPVVVGNCTG-----FAVNRA-FF---PYSQSARLLVSL-G--VDVFRIDSAI 522 (725)
Q Consensus 458 ii~~~~t~~e~~~~~~~l~~~lGk---~~v~v~d~~G-----fi~nRl-~~---a~~~Ea~~l~~~-G--v~~~dID~~~ 522 (725)
++.+. +++++++++++++.+|. ..+++++ +| -++|++ .. ..+.|++.+.++ | ++++++-.++
T Consensus 133 ~~~gG--~~~~~~~~~~~l~~~~~~~~~~~~~G~-~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~ 209 (299)
T PRK12490 133 LMVGG--DKEIYDRLEPVFKALAPEGPGYVHAGP-VGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLW 209 (299)
T ss_pred EEecC--CHHHHHHHHHHHHHhcCcCCcEEEECC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHH
Confidence 33222 68999999999999997 6788876 34 233443 32 233599999986 7 8999988888
Q ss_pred H
Q 004891 523 R 523 (725)
Q Consensus 523 ~ 523 (725)
.
T Consensus 210 ~ 210 (299)
T PRK12490 210 R 210 (299)
T ss_pred c
Confidence 3
No 157
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.41 E-value=1.2e-11 Score=132.18 Aligned_cols=205 Identities=16% Similarity=0.068 Sum_probs=135.5
Q ss_pred cHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccCCCEEEEeccCC
Q 004891 320 GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIES 398 (725)
Q Consensus 320 G~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aDlVIeavpe~ 398 (725)
|.+||..|+++|++|++||++++.++... ++...+.| +..+++. +.+++||+||.|+|..
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~------~~~l~~~G-------------i~~asd~~eaa~~ADvVIlaVP~~ 92 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEEL------WKKVEDAG-------------VKVVSDDAEAAKHGEIHILFTPFG 92 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHH------HHHHHHCC-------------CEEeCCHHHHHhCCCEEEEECCCc
Confidence 89999999999999999999988654311 11111222 3334444 6678999999999955
Q ss_pred hHHHHHHHHHHHHhCCCCeEEEecCCCCChHHH----hcccCCCCcEEEEecCCCCCC----CCeeeEecCCC------C
Q 004891 399 VPLKQKIFSELEKACPPHCILATNTSTIDLNIV----GEKTSSQDRIIGAHFFSPAHV----MPLLEIVRTER------T 464 (725)
Q Consensus 399 ~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l----~~~~~~~~r~ig~h~~~p~~~----~~lveii~~~~------t 464 (725)
. ..+.++..+.+.++++++|++ +|+.+.... ...+..+.+.+|+||++|... ...++++.+.. .
T Consensus 93 ~-~v~~Vl~~L~~~L~~g~IVId-~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~ 170 (342)
T PRK12557 93 K-KTVEIAKNILPHLPENAVICN-TCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTELA 170 (342)
T ss_pred H-HHHHHHHHHHhhCCCCCEEEE-ecCCCHHHHHHHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccCC
Confidence 4 466777889999999998874 555555433 234443445667887766543 22345665442 3
Q ss_pred CHHHHHHHHHHHHHcCCeeEEEcCCcchh---hhhhhHHH----HHHHHHHHHc-CCCHHHHHHHH-HhcCCCccHHHHH
Q 004891 465 SAQVILDLMTVGKIIKKVPVVVGNCTGFA---VNRAFFPY----SQSARLLVSL-GVDVFRIDSAI-RSFGLPIGPFQLL 535 (725)
Q Consensus 465 ~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi---~nRl~~a~----~~Ea~~l~~~-Gv~~~dID~~~-~~~G~p~Gpf~~~ 535 (725)
+++.+++++++++.+|+++++++...|-. .|.++.+. ..|++.+.+. |.+|.+.-.-+ ... -.|--.++
T Consensus 171 ~~e~~e~v~~LL~a~G~~v~~~~~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~~--~~~~a~l~ 248 (342)
T PRK12557 171 TEEQIEKCVELAESIGKEPYVVPADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQILMT--LQTMASLV 248 (342)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH--HHHHHHHH
Confidence 89999999999999999998887533333 24444333 2478887766 77777755444 211 13667777
Q ss_pred HhhchHHHHHHH
Q 004891 536 DLAGYGVAAATS 547 (725)
Q Consensus 536 D~~Gld~~~~~~ 547 (725)
-..|+|...+.+
T Consensus 249 ~~~~~~~~~~~~ 260 (342)
T PRK12557 249 ETSGVDGLLKAL 260 (342)
T ss_pred HHhChHHHHHhc
Confidence 778877766544
No 158
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.41 E-value=3.4e-12 Score=141.30 Aligned_cols=201 Identities=19% Similarity=0.170 Sum_probs=130.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHH--hhcCcccccCc-cccc
Q 004891 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANN--ALKMLKGVLDY-SEFK 386 (725)
Q Consensus 310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~--~~~~i~~~~~~-~~l~ 386 (725)
||+|||+|.||.++|..|+++|++|++||+++++++...+... ...+.+ +. +.... ..++++.++++ +.++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~----~~~e~~-l~-~~~~~~~~~g~l~~~~~~~~~~~ 75 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKS----PIYEPG-LD-ELLAKALAAGRLRATTDYEDAIR 75 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCC----CCCCCC-HH-HHHHHhhhcCCeEEECCHHHHHh
Confidence 7999999999999999999999999999999998776432100 000000 00 00000 11346666676 4689
Q ss_pred CCCEEEEeccCChH--------HHHHHHHHHHHhCCCCeEEEecCCCCChH---HHhc-ccCC-------CCcEEEEecC
Q 004891 387 DVDMVIEAVIESVP--------LKQKIFSELEKACPPHCILATNTSTIDLN---IVGE-KTSS-------QDRIIGAHFF 447 (725)
Q Consensus 387 ~aDlVIeavpe~~~--------~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~-~~~~-------~~r~ig~h~~ 447 (725)
+||+||.|||.+.. ....+.+.+.+.++++++|+. .||+++. ++.. .... ..-.+..+|
T Consensus 76 ~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~-~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~P- 153 (411)
T TIGR03026 76 DADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVL-ESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNP- 153 (411)
T ss_pred hCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEE-eCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECC-
Confidence 99999999997643 456667888888889988764 3454433 2321 1111 111234443
Q ss_pred CCCCCCCe---------eeEecCCCCCHHHHHHHHHHHHHcC-CeeEEEcCCc-----chhhhhh---hHHHHHHHHHHH
Q 004891 448 SPAHVMPL---------LEIVRTERTSAQVILDLMTVGKIIK-KVPVVVGNCT-----GFAVNRA---FFPYSQSARLLV 509 (725)
Q Consensus 448 ~p~~~~~l---------veii~~~~t~~e~~~~~~~l~~~lG-k~~v~v~d~~-----Gfi~nRl---~~a~~~Ea~~l~ 509 (725)
....+. ..++.| .+++..++++++++.++ +.++++++.. .++.|-+ ..+++||+..+.
T Consensus 154 --e~~~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la 229 (411)
T TIGR03026 154 --EFLREGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARIC 229 (411)
T ss_pred --CcCCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211111 134555 37999999999999998 5777776522 2344433 257889999888
Q ss_pred Hc-CCCHHHHHHHH
Q 004891 510 SL-GVDVFRIDSAI 522 (725)
Q Consensus 510 ~~-Gv~~~dID~~~ 522 (725)
+. |+++.++-.++
T Consensus 230 ~~~GiD~~~v~~~~ 243 (411)
T TIGR03026 230 EALGIDVYEVIEAA 243 (411)
T ss_pred HHhCCCHHHHHHHh
Confidence 77 99999998887
No 159
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.40 E-value=3.2e-12 Score=135.54 Aligned_cols=182 Identities=16% Similarity=0.135 Sum_probs=122.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc--
Q 004891 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK-- 386 (725)
Q Consensus 310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~-- 386 (725)
||+|||+|.||.+||.+|+++|++|++||+++++.+... +.| ....++. +.++
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g-------------~~~~~~~~e~~~~~ 57 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALA-----------EEG-------------ATGADSLEELVAKL 57 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH-----------HCC-------------CeecCCHHHHHhhc
Confidence 799999999999999999999999999999998876542 112 1222233 2233
Q ss_pred -CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhcccCCCCcEEEEecCCCCCCCCe------ee
Q 004891 387 -DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHVMPL------LE 457 (725)
Q Consensus 387 -~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~~~r~ig~h~~~p~~~~~l------ve 457 (725)
++|+||.|+|.+..+ .+++..+.+.++++.++++.+++.+.. .+.+.+... |.+|.+.|..+.. ..
T Consensus 58 ~~~dvvi~~v~~~~~~-~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~----g~~~~dapvsG~~~~a~~g~~ 132 (301)
T PRK09599 58 PAPRVVWLMVPAGEIT-DATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEK----GIHFVDVGTSGGVWGLERGYC 132 (301)
T ss_pred CCCCEEEEEecCCcHH-HHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHc----CCEEEeCCCCcCHHHHhcCCe
Confidence 479999999965444 455677888888888887654444422 233333221 4555543333211 12
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCC----eeEEEcCCcc--h---hhh-hhhHHH---HHHHHHHHH---cCCCHHHHHHH
Q 004891 458 IVRTERTSAQVILDLMTVGKIIKK----VPVVVGNCTG--F---AVN-RAFFPY---SQSARLLVS---LGVDVFRIDSA 521 (725)
Q Consensus 458 ii~~~~t~~e~~~~~~~l~~~lGk----~~v~v~d~~G--f---i~n-Rl~~a~---~~Ea~~l~~---~Gv~~~dID~~ 521 (725)
++.| .+++++++++++++.+++ ..+++++ .| . ++| -+.... +.|++.+.+ .|++++++-.+
T Consensus 133 ~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~~G~-~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~ 209 (301)
T PRK09599 133 LMIG--GDKEAVERLEPIFKALAPRAEDGYLHAGP-VGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEV 209 (301)
T ss_pred EEec--CCHHHHHHHHHHHHHHcccccCCeEeECC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3333 269999999999999999 7888887 34 1 223 333332 348888886 47899999999
Q ss_pred HH
Q 004891 522 IR 523 (725)
Q Consensus 522 ~~ 523 (725)
+.
T Consensus 210 ~~ 211 (301)
T PRK09599 210 WR 211 (301)
T ss_pred Hh
Confidence 83
No 160
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.39 E-value=2e-12 Score=129.46 Aligned_cols=153 Identities=22% Similarity=0.278 Sum_probs=109.8
Q ss_pred EEEEEeCCCCCCCC---CHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHH
Q 004891 15 VAIITLINPPVNAL---AIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV 91 (725)
Q Consensus 15 v~~i~l~~p~~Nal---~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 91 (725)
|++|.++.+ + .+.++.+|.++|+.++.|+++++|||++ +|.|+|+.... ...+.+
T Consensus 2 v~vi~i~g~----i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~----~s~Gg~~~~~~-------------~i~~~i- 59 (208)
T cd07023 2 IAVIDIEGT----ISDGGGIGADSLIEQLRKAREDDSVKAVVLRI----NSPGGSVVASE-------------EIYREI- 59 (208)
T ss_pred EEEEEEEEE----EcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEE----ECCCCCHHHHH-------------HHHHHH-
Confidence 567777654 3 3779999999999999999999999988 57899886531 122345
Q ss_pred HHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccc------------cCCCCCchh-------------
Q 004891 92 NLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPGFGG------------- 146 (725)
Q Consensus 92 ~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~------------~Gl~p~~g~------------- 146 (725)
+.+..++|||||+++|.|.|+|+.|+++||++++++.+.|+...+. +|+-+..-.
T Consensus 60 ~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~ 139 (208)
T cd07023 60 RRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRP 139 (208)
T ss_pred HHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCC
Confidence 5578889999999999999999999999999999999988643222 333221110
Q ss_pred -----hchHhhh-----------------hCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHH
Q 004891 147 -----TQRLPRL-----------------VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190 (725)
Q Consensus 147 -----~~~l~r~-----------------vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~ 190 (725)
...+..+ +..... +-++.|..+++++|++.||||++...++..
T Consensus 140 ~s~~~~e~~~~~l~~~~~~f~~~Va~~R~~~~~~~-~~~~~~~~~~a~~A~~~gLiD~i~~~~~~~ 204 (208)
T cd07023 140 LTEEERAILQALVDDIYDQFVDVVAEGRGMSGERL-DKLADGRVWTGRQALELGLVDELGGLDDAI 204 (208)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH-HHhcCCcEEEHHHHHHcCCCcccCCHHHHH
Confidence 0001111 111222 335688999999999999999998655543
No 161
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.39 E-value=3.1e-11 Score=125.82 Aligned_cols=198 Identities=18% Similarity=0.186 Sum_probs=135.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHH--------HHHHHHhhHHcCCCCHHHHHHhhcCccccc
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT--------IEANVRGLVTRGKLTQDKANNALKMLKGVL 380 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~--------i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 380 (725)
.+|+|||+|.+|.++|..++++|++|+++|+|+.+++..... +...+...+ ..++++.|+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v------------~~g~lraTt 77 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAV------------ESGKLRATT 77 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHH------------hcCCceEec
Confidence 789999999999999999999999999999999998875322 011112222 235688899
Q ss_pred CcccccCCCEEEEeccC--------ChHHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhcc-------cCCCCcEEE
Q 004891 381 DYSEFKDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEK-------TSSQDRIIG 443 (725)
Q Consensus 381 ~~~~l~~aDlVIeavpe--------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~-------~~~~~r~ig 443 (725)
+.+.++.||++|+|||. |+.......+.|.++++++.+|+.-+++.|-+ ++... +..+..|.-
T Consensus 78 d~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~l 157 (436)
T COG0677 78 DPEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYL 157 (436)
T ss_pred ChhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeE
Confidence 99999999999999985 56677777888999999999887544444422 33221 222222322
Q ss_pred EecCCCCCCCCe---ee------EecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCc-----chhhhh---hhHHHHHHHH
Q 004891 444 AHFFSPAHVMPL---LE------IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCT-----GFAVNR---AFFPYSQSAR 506 (725)
Q Consensus 444 ~h~~~p~~~~~l---ve------ii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~-----Gfi~nR---l~~a~~~Ea~ 506 (725)
.| .|-+.+|. .| ++.| .+++..+.+..|++.+-+..+.+.+.. ...-|- +-.+++||..
T Consensus 158 ay--sPERv~PG~~~~el~~~~kVIgG--~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNEla 233 (436)
T COG0677 158 AY--SPERVLPGNVLKELVNNPKVIGG--VTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELA 233 (436)
T ss_pred ee--CccccCCCchhhhhhcCCceeec--CCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 22 44444332 23 3444 379999999999999877766665422 222242 2468999976
Q ss_pred HHHHc-CCCHHHHHHHH
Q 004891 507 LLVSL-GVDVFRIDSAI 522 (725)
Q Consensus 507 ~l~~~-Gv~~~dID~~~ 522 (725)
.+.++ |++..++-.+.
T Consensus 234 li~~~~GIdvwevIeaA 250 (436)
T COG0677 234 LICNAMGIDVWEVIEAA 250 (436)
T ss_pred HHHHHhCCcHHHHHHHh
Confidence 66655 99887766655
No 162
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.39 E-value=1.1e-12 Score=153.91 Aligned_cols=102 Identities=21% Similarity=0.196 Sum_probs=92.6
Q ss_pred HHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCC--CHHHHHHHH-HhcCCCc---cHHHHHHhhchHHHH
Q 004891 471 DLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQLLDLAGYGVAA 544 (725)
Q Consensus 471 ~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv--~~~dID~~~-~~~G~p~---Gpf~~~D~~Gld~~~ 544 (725)
.+..++..+++.++.+.+.+|||+||++.+++||+++|+++|+ +++|||.++ .++|||+ |||+++|.+|+|.++
T Consensus 626 ~v~~~~~~~~k~p~~~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~v~ 705 (737)
T TIGR02441 626 DADEILAQYKLPPKAEVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKLV 705 (737)
T ss_pred HHHHHHHHhccCcccccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHH
Confidence 3556667788877766789999999999999999999999997 999999999 8999996 999999999999999
Q ss_pred HHHHHHHhhCCCCCCCcHHHHHHHHc-CC
Q 004891 545 ATSKEFDKAFPDRSFQSPLVDLLLKS-GR 572 (725)
Q Consensus 545 ~~~~~l~~~~~~~~~~~~~l~~~v~~-g~ 572 (725)
+.++.+++.+++++.|++++++|+++ |+
T Consensus 706 ~~~~~l~~~~g~~~~p~~lL~~~~~~~g~ 734 (737)
T TIGR02441 706 DKMEKYAAAYGVQFTPCQLLLDHAKSPGK 734 (737)
T ss_pred HHHHHHHHHhCCCcCCCHHHHHHHHhcCC
Confidence 99999999999877799999999987 64
No 163
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.37 E-value=7.7e-12 Score=133.16 Aligned_cols=156 Identities=18% Similarity=0.141 Sum_probs=113.9
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-c
Q 004891 307 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (725)
Q Consensus 307 ~~~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (725)
.++||+|||+|.||.++|..|.+.|+ +|++||++++.++.+. +.|.. .....+. +
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~-----------~~g~~-----------~~~~~~~~~ 62 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR-----------ELGLG-----------DRVTTSAAE 62 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH-----------hCCCC-----------ceecCCHHH
Confidence 45799999999999999999999995 8999999998766542 12211 0112233 4
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH---HHhcccCCCCcEEEEecCCCCCC--------
Q 004891 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHV-------- 452 (725)
Q Consensus 384 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~p~~~-------- 452 (725)
.+++||+||+|+| ......++.++.+.++++++|++.+| .... .+........+|++.||+.+...
T Consensus 63 ~~~~aDvViiavp--~~~~~~v~~~l~~~l~~~~iv~dvgs-~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~ 139 (307)
T PRK07502 63 AVKGADLVILCVP--VGASGAVAAEIAPHLKPGAIVTDVGS-VKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFA 139 (307)
T ss_pred HhcCCCEEEECCC--HHHHHHHHHHHHhhCCCCCEEEeCcc-chHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCH
Confidence 5789999999999 45567788888888889988865444 3322 33333334458999999865432
Q ss_pred ----CCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004891 453 ----MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (725)
Q Consensus 453 ----~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 487 (725)
+..+.+++...++++.++.+.++++.+|..++++.
T Consensus 140 ~l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~ 178 (307)
T PRK07502 140 ELFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEMD 178 (307)
T ss_pred HHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 12345667777889999999999999999998874
No 164
>PLN02256 arogenate dehydrogenase
Probab=99.36 E-value=9.2e-12 Score=131.18 Aligned_cols=153 Identities=11% Similarity=0.026 Sum_probs=111.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc-
Q 004891 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF- 385 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l- 385 (725)
.+||+|||+|.||+++|..|.+.|++|++||+++.. +.+. +.| +...++. +.+
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~-----------~~g-------------v~~~~~~~e~~~ 90 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAA-----------ELG-------------VSFFRDPDDFCE 90 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHH-----------HcC-------------CeeeCCHHHHhh
Confidence 468999999999999999999999999999998632 2111 111 1122333 233
Q ss_pred cCCCEEEEeccCChHHHHHHHHHH-HHhCCCCeEEEecCCC--CChHHHhcccCCCCcEEEEecCCCCCCCC------ee
Q 004891 386 KDVDMVIEAVIESVPLKQKIFSEL-EKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAHVMP------LL 456 (725)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l-~~~~~~~~ii~s~tS~--~~~~~l~~~~~~~~r~ig~h~~~p~~~~~------lv 456 (725)
.++|+||.|+| .....+++.++ ...++++++|++.+|+ .++..+...+....+|++.||+.++.... .+
T Consensus 91 ~~aDvVilavp--~~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~ 168 (304)
T PLN02256 91 EHPDVVLLCTS--ILSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPF 168 (304)
T ss_pred CCCCEEEEecC--HHHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeE
Confidence 46999999999 56677888888 5668899999887773 44556666555455799999987775431 11
Q ss_pred eEecC----CCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004891 457 EIVRT----ERTSAQVILDLMTVGKIIKKVPVVVG 487 (725)
Q Consensus 457 eii~~----~~t~~e~~~~~~~l~~~lGk~~v~v~ 487 (725)
-+.+. +.++++.++.++++++.+|..++.+.
T Consensus 169 ~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~ 203 (304)
T PLN02256 169 VYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMS 203 (304)
T ss_pred EEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 11121 56788999999999999999999884
No 165
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.36 E-value=1.4e-12 Score=152.99 Aligned_cols=91 Identities=14% Similarity=0.182 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCCC--CCCC
Q 004891 621 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF--FKPS 698 (725)
Q Consensus 621 ~~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~--~~p~ 698 (725)
.--|.||++.++++||+.++++| + +++|||.+++.++|||+ |||+++|.+|+|.+.++++.+...++++ +.|+
T Consensus 495 pGfv~nRi~~~~~~ea~~lv~~G-a-~~e~ID~a~~~~~G~~~---GP~~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~~ 569 (715)
T PRK11730 495 PGFFVNRVLFPYFAGFSQLLRDG-A-DFRQIDKVMEKQFGWPM---GPAYLLDVVGIDTAHHAQAVMAEGFPDRMKKDYR 569 (715)
T ss_pred CchhHHHHHHHHHHHHHHHHHcC-C-CHHHHHHHHHhhCCCcc---CHHHHHHhhchHHHHHHHHHHHHhcCCccccchh
Confidence 34799999999999999999999 6 89999999999999998 9999999999999999999999888774 3457
Q ss_pred HHHHHHH-------HcCCCCCCCCC
Q 004891 699 RFLEERA-------TKGIPLSAPVS 716 (725)
Q Consensus 699 ~~l~~~~-------~~g~gf~~~~~ 716 (725)
+++++|+ |+|+|||+|++
T Consensus 570 ~~l~~~v~~G~~G~k~g~GfY~y~~ 594 (715)
T PRK11730 570 DAIDVLFEAKRFGQKNGKGFYRYEE 594 (715)
T ss_pred HHHHHHHHCCCCccccCCEeEeccc
Confidence 8999998 78999999953
No 166
>PLN02858 fructose-bisphosphate aldolase
Probab=99.35 E-value=6.6e-12 Score=155.45 Aligned_cols=187 Identities=16% Similarity=0.096 Sum_probs=132.1
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (725)
-+||||||+|.||.+||.+|+++|++|++||+++++.+... +.| ....++. +.++
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~-----------~~G-------------a~~~~s~~e~a~ 59 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFC-----------ELG-------------GHRCDSPAEAAK 59 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HcC-------------CeecCCHHHHHh
Confidence 36899999999999999999999999999999998877643 222 1223344 6678
Q ss_pred CCCEEEEeccCChHHHHHHH--HHHHHhCCCCeEEEecCCCCChH---HHhcccCCCCcEEE--EecCCCCCCC------
Q 004891 387 DVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIG--AHFFSPAHVM------ 453 (725)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig--~h~~~p~~~~------ 453 (725)
+||+||.|+|++..++..++ ..+.+.+.++.+++. +||+.+. ++++.+... | .+|++.|..+
T Consensus 60 ~advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd-~STi~p~~~~~la~~l~~~----g~~~~~lDaPVsGg~~~A~ 134 (1378)
T PLN02858 60 DAAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILI-RSTILPLQLQKLEKKLTER----KEQIFLVDAYVSKGMSDLL 134 (1378)
T ss_pred cCCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEE-CCCCCHHHHHHHHHHHHhc----CCceEEEEccCcCCHHHHh
Confidence 89999999998888776665 357777888888765 4555544 333333222 3 4555444333
Q ss_pred --CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEE-cCC-cc---hhhhhhhH----HHHHHHHHHHHc-CCCHHHHHHH
Q 004891 454 --PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV-GNC-TG---FAVNRAFF----PYSQSARLLVSL-GVDVFRIDSA 521 (725)
Q Consensus 454 --~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v-~d~-~G---fi~nRl~~----a~~~Ea~~l~~~-Gv~~~dID~~ 521 (725)
.+.-++.| +++++++++++++.+|+..+++ ++. .| -++|+++. ..+.|++.+.+. |++++.+-.+
T Consensus 135 ~G~L~imvGG---~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~v 211 (1378)
T PLN02858 135 NGKLMIIASG---RSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDI 211 (1378)
T ss_pred cCCeEEEEcC---CHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 33334445 5889999999999999988865 542 22 24455543 334599988866 9999999888
Q ss_pred H-HhcC
Q 004891 522 I-RSFG 526 (725)
Q Consensus 522 ~-~~~G 526 (725)
+ .+.|
T Consensus 212 l~~s~g 217 (1378)
T PLN02858 212 ISNAAG 217 (1378)
T ss_pred HhcCCc
Confidence 8 5554
No 167
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.34 E-value=4.4e-12 Score=121.56 Aligned_cols=129 Identities=17% Similarity=0.265 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEEccccc
Q 004891 31 PIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL 110 (725)
Q Consensus 31 ~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~ 110 (725)
.....+.+.|+.++.+..+ .+.|.+.|+...+ ...++ +.|..++||||+.++|.|.
T Consensus 15 ~~~~~~~~~l~~~~~~~~i-~l~inspGG~~~~----------------------~~~i~-~~i~~~~~pvi~~v~g~a~ 70 (160)
T cd07016 15 VTAKEFKDALDALGDDSDI-TVRINSPGGDVFA----------------------GLAIY-NALKRHKGKVTVKIDGLAA 70 (160)
T ss_pred cCHHHHHHHHHhccCCCCE-EEEEECCCCCHHH----------------------HHHHH-HHHHhcCCCEEEEEcchHH
Confidence 4677888888888877443 3444554432111 12445 6688899999999999999
Q ss_pred chhhHHhhhcCEEEeeCCceEeCcccccCCCCCch---------------hhchHhhhhC--HHHHHHHHHcCCCCCHHH
Q 004891 111 GGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFG---------------GTQRLPRLVG--LSKAIEMMLLSKSITSEE 173 (725)
Q Consensus 111 GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g---------------~~~~l~r~vG--~~~a~~l~l~g~~~~a~e 173 (725)
|+|+.++++||+|+++++++|+++....+..+... ....+.+..| .....+++.++..++|+|
T Consensus 71 s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~e 150 (160)
T cd07016 71 SAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQE 150 (160)
T ss_pred hHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHH
Confidence 99999999999999999999999877766544322 1233777788 678888888888999999
Q ss_pred HHHcCCccee
Q 004891 174 GWKLGLIDAV 183 (725)
Q Consensus 174 A~~~Glv~~v 183 (725)
|+++||||+|
T Consensus 151 A~~~GliD~v 160 (160)
T cd07016 151 AVELGFADEI 160 (160)
T ss_pred HHHcCCCCcC
Confidence 9999999985
No 168
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.34 E-value=2.2e-12 Score=150.94 Aligned_cols=90 Identities=16% Similarity=0.212 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCCCC--CCC
Q 004891 621 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFF--KPS 698 (725)
Q Consensus 621 ~~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~--~p~ 698 (725)
.--|.||++.++++||+.++++| + ++++||.++..++|||+ |||+++|.+|+|..+++++.+.+.+++++ .|+
T Consensus 495 pGfi~NRl~~~~~~ea~~l~~eG-~-~~~~ID~a~~~~~G~p~---GPf~l~D~~Gld~~~~i~~~~~~~~~~~~~~~~~ 569 (714)
T TIGR02437 495 PGFFVNRVLFPYFGGFSKLLRDG-A-DFVRIDKVMEKQFGWPM---GPAYLLDVVGIDTGHHAQAVMAEGFPDRMGKDGR 569 (714)
T ss_pred ccchHHHHHHHHHHHHHHHHHCC-C-CHHHHHHHHHhcCCCcc---CHHHHHHhhhHHHHHHHHHHHHHhcCcccccchh
Confidence 34699999999999999999999 5 89999999999999998 99999999999999999999998887754 457
Q ss_pred HHHHHHH-------HcCCCCCCCC
Q 004891 699 RFLEERA-------TKGIPLSAPV 715 (725)
Q Consensus 699 ~~l~~~~-------~~g~gf~~~~ 715 (725)
+++++|+ |+|+|||+|+
T Consensus 570 ~~l~~~v~~G~lG~K~g~GfY~y~ 593 (714)
T TIGR02437 570 DAIDALFEAKRLGQKNGKGFYAYE 593 (714)
T ss_pred HHHHHHHHCCCCcccCCCEEEecc
Confidence 8999998 7899999995
No 169
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.33 E-value=1.3e-11 Score=137.23 Aligned_cols=188 Identities=15% Similarity=0.126 Sum_probs=124.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc----ccc
Q 004891 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SEF 385 (725)
Q Consensus 310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~l 385 (725)
+|+|||+|.||.+||.+|+++|++|++||+++++++...+.. ..|. .+....+. +.+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~--------~~g~-----------~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEH--------AKGK-----------KIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhc--------cCCC-----------CceecCCHHHHHhhc
Confidence 489999999999999999999999999999999877653210 0010 01112222 234
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHH--hcccCCCCcEEEEecCCCCCCCCe------ee
Q 004891 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV--GEKTSSQDRIIGAHFFSPAHVMPL------LE 457 (725)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l--~~~~~~~~r~ig~h~~~p~~~~~l------ve 457 (725)
+.+|+||.|||.+..+ .+++.++.+.++++.||++.+++.+.... .+.+.. + |+||+..|..+.. .-
T Consensus 62 ~~~dvIil~v~~~~~v-~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~--~--gi~fvdapVsGG~~gA~~G~~ 136 (467)
T TIGR00873 62 ERPRKIMLMVKAGAPV-DAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKA--K--GILFVGSGVSGGEEGARKGPS 136 (467)
T ss_pred CCCCEEEEECCCcHHH-HHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHh--c--CCEEEcCCCCCCHHHHhcCCc
Confidence 6799999999965554 55778898999999998876665544322 222221 1 5566544433211 12
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCee------EEEcCC-cch----hhhhhhHHH---HHHHHHHHH--cCCCHHHHHHH
Q 004891 458 IVRTERTSAQVILDLMTVGKIIKKVP------VVVGNC-TGF----AVNRAFFPY---SQSARLLVS--LGVDVFRIDSA 521 (725)
Q Consensus 458 ii~~~~t~~e~~~~~~~l~~~lGk~~------v~v~d~-~Gf----i~nRl~~a~---~~Ea~~l~~--~Gv~~~dID~~ 521 (725)
++.|. ++++++.++++++.++..+ .++++. .|. +-|-+.+++ +.|++.++. .|++++++-.+
T Consensus 137 im~GG--~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v 214 (467)
T TIGR00873 137 IMPGG--SAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEV 214 (467)
T ss_pred CCCCC--CHHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 33333 7899999999999999863 677752 232 334454433 359998874 58999998888
Q ss_pred HH
Q 004891 522 IR 523 (725)
Q Consensus 522 ~~ 523 (725)
+.
T Consensus 215 ~~ 216 (467)
T TIGR00873 215 FT 216 (467)
T ss_pred HH
Confidence 74
No 170
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.33 E-value=1.1e-11 Score=135.23 Aligned_cols=193 Identities=17% Similarity=0.209 Sum_probs=119.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHH----HHHHhhHHcCCCCHHHHHHhhcCcccccCc-cc
Q 004891 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE----ANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (725)
Q Consensus 310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~----~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (725)
||+|||+|.||.++|..++. |++|++||+++++++...+.+. ..+++.+.. ...+++.+++. +.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~----------~~~~l~~t~~~~~~ 70 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQS----------DKIHFNATLDKNEA 70 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHh----------CCCcEEEecchhhh
Confidence 79999999999999988875 9999999999999888765321 111111111 11345445554 56
Q ss_pred ccCCCEEEEeccCChH---------HHHHHHHHHHHhCCCCeEEEecCCCCChH---HHhcccCCCCcEEEEecCCCCCC
Q 004891 385 FKDVDMVIEAVIESVP---------LKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHV 452 (725)
Q Consensus 385 l~~aDlVIeavpe~~~---------~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~p~~~ 452 (725)
+++||+||+|||++.+ ...++++.+.+ ++++++|+. .||.++. ++...+. +. ++.| +|...
T Consensus 71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~-~STv~pgtt~~l~~~~~--~~--~v~~-~PE~l 143 (388)
T PRK15057 71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVI-KSTVPVGFTAAMHKKYR--TE--NIIF-SPEFL 143 (388)
T ss_pred hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEE-eeecCCchHHHHHHHhh--cC--cEEE-Ccccc
Confidence 7999999999998743 33556677776 577887754 3444443 3332221 11 2222 34322
Q ss_pred CCee---------eEecCCCCCHHHHHHHHHHHHH--cCCe-eEEEcC-----Ccchhhhhhh---HHHHHHHHHHHHc-
Q 004891 453 MPLL---------EIVRTERTSAQVILDLMTVGKI--IKKV-PVVVGN-----CTGFAVNRAF---FPYSQSARLLVSL- 511 (725)
Q Consensus 453 ~~lv---------eii~~~~t~~e~~~~~~~l~~~--lGk~-~v~v~d-----~~Gfi~nRl~---~a~~~Ea~~l~~~- 511 (725)
.+.- -++.|. +++..+.+.+++.. ++.. ++++.+ ...++.|-++ .+++||+..+.+.
T Consensus 144 ~~G~a~~d~~~p~rvv~G~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~ 221 (388)
T PRK15057 144 REGKALYDNLHPSRIVIGE--RSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESL 221 (388)
T ss_pred cCCcccccccCCCEEEEEc--CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2211 133332 24556777777754 5543 334543 2234455443 5788999888876
Q ss_pred CCCHHHHHHHH
Q 004891 512 GVDVFRIDSAI 522 (725)
Q Consensus 512 Gv~~~dID~~~ 522 (725)
|+++.++-.++
T Consensus 222 GiD~~eV~~a~ 232 (388)
T PRK15057 222 GLNTRQIIEGV 232 (388)
T ss_pred CcCHHHHHHHh
Confidence 99999988887
No 171
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.33 E-value=1.3e-11 Score=123.33 Aligned_cols=154 Identities=25% Similarity=0.311 Sum_probs=108.4
Q ss_pred EEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHH
Q 004891 15 VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI 94 (725)
Q Consensus 15 v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (725)
|++|+++.+ ++ ...++|.++|+.+.+|+++++|||+.. |.|+++... .++. +.|
T Consensus 2 v~vi~i~g~----i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~~----------------~~l~-~~i 55 (207)
T TIGR00706 2 IAILPVSGA----IA-VSPEDFDKKIKRIKDDKSIKALLLRIN----SPGGTVVAS----------------EEIY-EKL 55 (207)
T ss_pred EEEEEEEEE----Ee-cCHHHHHHHHHHHhhCCCccEEEEEec----CCCCCHHHH----------------HHHH-HHH
Confidence 566777654 21 235789999999999999999999974 777776532 2334 456
Q ss_pred hhCC--CcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccc------------cCCCC------------Cc--hh
Q 004891 95 EDCK--KPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIP------------GF--GG 146 (725)
Q Consensus 95 ~~~~--kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~------------~Gl~p------------~~--g~ 146 (725)
..++ |||||.++|.|.|+|+.|+++||.++|++++.++...+. +|+-+ .. ..
T Consensus 56 ~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~ 135 (207)
T TIGR00706 56 KKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTREL 135 (207)
T ss_pred HHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCC
Confidence 6676 999999999999999999999999999999987653332 33321 00 00
Q ss_pred h----chH-----------------hhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHH
Q 004891 147 T----QRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRL 195 (725)
Q Consensus 147 ~----~~l-----------------~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~ 195 (725)
+ ..+ .|-+......+ ++.|+.+++++|++.||||++...+++.+...+
T Consensus 136 s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~-~~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~~~ 204 (207)
T TIGR00706 136 TPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKK-FADGRVFTGRQALKLRLVDKLGTEDDALKWLAE 204 (207)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH-HhcCCcccHHHHHHcCCCcccCCHHHHHHHHHH
Confidence 0 011 12223333333 467899999999999999999987776655443
No 172
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.31 E-value=7e-11 Score=123.65 Aligned_cols=153 Identities=14% Similarity=0.051 Sum_probs=120.3
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCC----CcEEEEeCChHH-HHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc
Q 004891 308 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~G----~~V~~~d~~~e~-~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (725)
|+||+|||+|.||.+++..|.++| ++|++|+++++. ++.... . ......+.+.
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~-----------~-----------~~~~~~~~~~ 58 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYD-----------K-----------YPTVELADNE 58 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHH-----------H-----------cCCeEEeCCH
Confidence 468999999999999999999998 789999987543 222110 0 0112223333
Q ss_pred -ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEe-c
Q 004891 383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-R 460 (725)
Q Consensus 383 -~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii-~ 460 (725)
+.+.++|+||.|+| ++...+++.++.+.++++++|+|...++.+.++...++. .+++.+.|+.|...+..+..+ .
T Consensus 59 ~e~~~~aDvVilavp--p~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~~~~ 135 (277)
T PRK06928 59 AEIFTKCDHSFICVP--PLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSLVAH 135 (277)
T ss_pred HHHHhhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEEEec
Confidence 45789999999999 777778899998888888888899999999999887753 489999999998888777766 4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeeEE
Q 004891 461 TERTSAQVILDLMTVGKIIKKVPVV 485 (725)
Q Consensus 461 ~~~t~~e~~~~~~~l~~~lGk~~v~ 485 (725)
++..+++..+.++.++..+|+...+
T Consensus 136 ~~~~~~~~~~~v~~l~~~~G~~~~v 160 (277)
T PRK06928 136 AETVNEANKSRLEETLSHFSHVMTI 160 (277)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 6677899999999999999987754
No 173
>PLN02858 fructose-bisphosphate aldolase
Probab=99.30 E-value=2.7e-11 Score=150.13 Aligned_cols=190 Identities=18% Similarity=0.179 Sum_probs=129.8
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (725)
Q Consensus 307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (725)
.+++|+|||+|.||.+||.+|+++|++|++||+++++++... +.| ....++. +.+
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~G-------------a~~~~s~~e~~ 378 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFE-----------NAG-------------GLAGNSPAEVA 378 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcC-------------CeecCCHHHHH
Confidence 358999999999999999999999999999999998876542 122 1112333 567
Q ss_pred cCCCEEEEeccCChHHHHHHHH--HHHHhCCCCeEEEecCCCCChH---HHhcccCCCCcEEEEecCCCCCCC-------
Q 004891 386 KDVDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHVM------- 453 (725)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~p~~~~------- 453 (725)
++||+||.|||++.+++..++. .+.+.+.++.+++. .||..+. ++++.+... -.|.+|.+.|..+
T Consensus 379 ~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd-~STvsP~~~~~la~~l~~~--g~g~~~lDAPVsGg~~~A~~ 455 (1378)
T PLN02858 379 KDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIVL-SSTVSPGFVIQLERRLENE--GRDIKLVDAPVSGGVKRAAM 455 (1378)
T ss_pred hcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHhh--CCCcEEEEccCCCChhhhhc
Confidence 8999999999988777666653 36666788888765 4444444 333333220 1255665544222
Q ss_pred -CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcc-----hhhhhhh----HHHHHHHHHHHHc-CCCHHHHHHHH
Q 004891 454 -PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG-----FAVNRAF----FPYSQSARLLVSL-GVDVFRIDSAI 522 (725)
Q Consensus 454 -~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G-----fi~nRl~----~a~~~Ea~~l~~~-Gv~~~dID~~~ 522 (725)
.+.-++.| +++.+++++++++.+|+..+++...+| -++|+++ .+.+.|++.+.+. |++++.+-.++
T Consensus 456 G~L~imvgG---~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl 532 (1378)
T PLN02858 456 GTLTIMASG---TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDII 532 (1378)
T ss_pred CCceEEEEC---CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 23333344 588999999999999998877543344 2445553 2445699888766 99999988877
Q ss_pred -HhcC
Q 004891 523 -RSFG 526 (725)
Q Consensus 523 -~~~G 526 (725)
.+.|
T Consensus 533 ~~s~g 537 (1378)
T PLN02858 533 SNAGG 537 (1378)
T ss_pred Hhhcc
Confidence 5544
No 174
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.30 E-value=2.7e-11 Score=133.64 Aligned_cols=200 Identities=17% Similarity=0.123 Sum_probs=124.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (725)
+||+|||+|.||.++|..|++ |++|++||+++++++...+.... ..+. ..++... .+++.++++.+.+++|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~----~~e~---~~~~l~~-~g~l~~t~~~~~~~~a 77 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDV----NLET---TEEELRE-ARYLKFTSEIEKIKEC 77 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCC----CCCC---CHHHHHh-hCCeeEEeCHHHHcCC
Confidence 589999999999999999887 69999999999998875421100 0000 0111111 2456777777778999
Q ss_pred CEEEEeccCCh--------HHHHHHHHHHHHhCCCCeEEEecCCCCChH---HHh-cccCC------CCcEEEEecCCCC
Q 004891 389 DMVIEAVIESV--------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVG-EKTSS------QDRIIGAHFFSPA 450 (725)
Q Consensus 389 DlVIeavpe~~--------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~-~~~~~------~~r~ig~h~~~p~ 450 (725)
|++|.|||.+. .......+.|.++++++.+|+.. ||.++. ++. ..+.. ...|.-.| +|.
T Consensus 78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~-STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~--~PE 154 (425)
T PRK15182 78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYE-STVYPGCTEEECVPILARMSGMTFNQDFYVGY--SPE 154 (425)
T ss_pred CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEe-cCCCCcchHHHHHHHHHhccCCCcCCCeeEee--CCC
Confidence 99999999663 22233346788889988887643 443332 121 11111 11222221 222
Q ss_pred CCCC---------eeeEecCCCCCHHHHHHHHHHHHHcC-CeeEEEcC-----Ccchhhhhhh---HHHHHHHHHHHHc-
Q 004891 451 HVMP---------LLEIVRTERTSAQVILDLMTVGKIIK-KVPVVVGN-----CTGFAVNRAF---FPYSQSARLLVSL- 511 (725)
Q Consensus 451 ~~~~---------lveii~~~~t~~e~~~~~~~l~~~lG-k~~v~v~d-----~~Gfi~nRl~---~a~~~Ea~~l~~~- 511 (725)
...+ +--++.|. +++..+.+..+++.+. ..++++.+ ...++.|-+. .+++||+..+.+.
T Consensus 155 ~v~~G~a~~~~~~~~riv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~ 232 (425)
T PRK15182 155 RINPGDKKHRLTNIKKITSGS--TAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRL 232 (425)
T ss_pred cCCCCcccccccCCCeEEECC--CHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2211 11245554 5788899999999986 34555543 2223344332 5788999888877
Q ss_pred CCCHHHHHHHH
Q 004891 512 GVDVFRIDSAI 522 (725)
Q Consensus 512 Gv~~~dID~~~ 522 (725)
|+++.++-.++
T Consensus 233 GiD~~~v~~a~ 243 (425)
T PRK15182 233 NIDTEAVLRAA 243 (425)
T ss_pred CcCHHHHHHHh
Confidence 99999988887
No 175
>PRK07680 late competence protein ComER; Validated
Probab=99.28 E-value=9.3e-11 Score=122.69 Aligned_cols=182 Identities=12% Similarity=0.072 Sum_probs=124.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC----cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cc
Q 004891 310 KVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (725)
Q Consensus 310 kIaVIG~G~mG~~iA~~l~~~G~----~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (725)
||+|||+|.||.+++..|.++|+ +|++||+++++.+...+. ...+..+.+. +.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~----------------------~~g~~~~~~~~~~ 59 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKER----------------------YPGIHVAKTIEEV 59 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHH----------------------cCCeEEECCHHHH
Confidence 69999999999999999999994 799999998876543210 0012233343 45
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeee-EecCCC
Q 004891 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTER 463 (725)
Q Consensus 385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lve-ii~~~~ 463 (725)
+.+||+||.|+| .....++++++.++++++++|++.+++.++..+...+. .+.+..+|..|........ ++.++.
T Consensus 60 ~~~aDiVilav~--p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~--~~~~r~~p~~~~~~~~G~t~~~~g~~ 135 (273)
T PRK07680 60 ISQSDLIFICVK--PLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVP--CQVARIIPSITNRALSGASLFTFGSR 135 (273)
T ss_pred HHhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCEEEECCChHHHHhhccEEEeeCCC
Confidence 789999999997 66677888989888888888888888888888877664 3456666654432222222 345666
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEcCC------------cchhhhhhhHHHHHHHHHHHH-cCCCHHHHHHHH
Q 004891 464 TSAQVILDLMTVGKIIKKVPVVVGNC------------TGFAVNRAFFPYSQSARLLVS-LGVDVFRIDSAI 522 (725)
Q Consensus 464 t~~e~~~~~~~l~~~lGk~~v~v~d~------------~Gfi~nRl~~a~~~Ea~~l~~-~Gv~~~dID~~~ 522 (725)
.+++..+.+.+++..+|. ++.+.+. |.|+.| ++.++...+ ++ .|+++++...++
T Consensus 136 ~~~~~~~~~~~ll~~~G~-~~~i~e~~~~~~~~l~gs~pa~~~~-~~~al~~~~---~~~~Gl~~~~a~~~~ 202 (273)
T PRK07680 136 CSEEDQQKLERLFSNIST-PLVIEEDITRVSSDIVSCGPAFFSY-LLQRFIDAA---VEETNISKEEATTLA 202 (273)
T ss_pred CCHHHHHHHHHHHHcCCC-EEEEChHhcchhhhhccchHHHHHH-HHHHHHHHH---HHhcCCCHHHHHHHH
Confidence 788889999999999995 4555432 112222 122233322 34 588888876665
No 176
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.28 E-value=4.2e-11 Score=121.98 Aligned_cols=182 Identities=15% Similarity=0.121 Sum_probs=141.1
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCC----CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-
Q 004891 308 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~G----~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~- 382 (725)
++||+|||+|+||.+|+..|.++| .+|++.+++++..+...++ ++... +++.
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~----------------------~g~~~-~~~~~ 57 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAE----------------------YGVVT-TTDNQ 57 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHH----------------------cCCcc-cCcHH
Confidence 368999999999999999999999 5899999999987643221 12222 3333
Q ss_pred ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEec-C
Q 004891 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVR-T 461 (725)
Q Consensus 383 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~-~ 461 (725)
+.+.++|+||.||. +....+++.++.+ ..++.+|+|...+++++.+...+. ..+++...|+.|...+..+..+. +
T Consensus 58 ~~~~~advv~LavK--Pq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t~i~~~ 133 (266)
T COG0345 58 EAVEEADVVFLAVK--PQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVTAISAN 133 (266)
T ss_pred HHHhhCCEEEEEeC--hHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcceeeecC
Confidence 67788999999997 7888899999988 778999999999999999999988 77899999999998888777665 5
Q ss_pred CCCCHHHHHHHHHHHHHcCCeeEEEc-----------CCcchhhhhhhHHHHHHHH--HHHHcCCCHHHHHHHH
Q 004891 462 ERTSAQVILDLMTVGKIIKKVPVVVG-----------NCTGFAVNRAFFPYSQSAR--LLVSLGVDVFRIDSAI 522 (725)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lGk~~v~v~-----------d~~Gfi~nRl~~a~~~Ea~--~l~~~Gv~~~dID~~~ 522 (725)
...+++..+.+.++++.+|+...+-. ..|. +..++-|++ .-+..|++.++.-...
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~v~~v~E~~~da~TaisGSgPA------yv~~~iEal~~agv~~Gl~~~~A~~l~ 201 (266)
T COG0345 134 ANVSEEDKAFVEALLSAVGKVVEVEESLMDAVTALSGSGPA------YVFLFIEALADAGVRLGLPREEARELA 201 (266)
T ss_pred ccCCHHHHHHHHHHHHhcCCeEEechHHhhHHHHHhcCCHH------HHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 77899999999999999998765531 1222 122334544 3445677777766554
No 177
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.28 E-value=3.7e-11 Score=128.94 Aligned_cols=137 Identities=13% Similarity=0.113 Sum_probs=103.7
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHC-CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891 309 RKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (725)
Q Consensus 309 ~kIaVIG~-G~mG~~iA~~l~~~-G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (725)
++|+|||+ |.||+++|..|.+. |++|+++|++.+. ..+. +.+
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~-----------------------------------~~~~~~~v 49 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG-----------------------------------SLDPATLL 49 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc-----------------------------------cCCHHHHh
Confidence 58999999 99999999999964 8999999985211 1111 457
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHHh---CCCCeEEEecCCCCC--hHHHhcccCCCCcEEEEecCCCCCC-----CCe
Q 004891 386 KDVDMVIEAVIESVPLKQKIFSELEKA---CPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAHV-----MPL 455 (725)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~---~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~p~~~-----~~l 455 (725)
++||+||.|+| +....++++++.++ ++++++|++.+|+.. +..+ .....+|+|.||+..+.. +..
T Consensus 50 ~~aDlVilavP--v~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~~~~~~fVG~HPMaG~E~s~lf~g~~ 124 (370)
T PRK08818 50 QRADVLIFSAP--IRHTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM---LASQAEVVGLHPMTAPPKSPTLKGRV 124 (370)
T ss_pred cCCCEEEEeCC--HHHHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH---HhcCCCEEeeCCCCCCCCCcccCCCe
Confidence 89999999999 88888999999876 689999987777642 2222 233346999999876643 233
Q ss_pred eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004891 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (725)
Q Consensus 456 veii~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 487 (725)
+-+++. ..++.++.++++++.+|..++.+.
T Consensus 125 ~iltp~--~~~~~~~~v~~l~~~~Ga~v~~~~ 154 (370)
T PRK08818 125 MVVCEA--RLQHWSPWVQSLCSALQAECVYAT 154 (370)
T ss_pred EEEeCC--CchhHHHHHHHHHHHcCCEEEEcC
Confidence 344544 345568899999999999999884
No 178
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.27 E-value=1.3e-10 Score=122.33 Aligned_cols=186 Identities=14% Similarity=0.061 Sum_probs=127.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (725)
++|+|||.|.||.++|..|..+|++|++++++.++..... .+.| +...+..+.+++|
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A----------~~~G-------------~~~~s~~eaa~~A 74 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKA----------EADG-------------FEVLTVAEAAKWA 74 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHH----------HHCC-------------CeeCCHHHHHhcC
Confidence 6899999999999999999999999999888754422211 0112 1222222678899
Q ss_pred CEEEEeccCChHHHHHHH-HHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCC-------CCCeeeEe-
Q 004891 389 DMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH-------VMPLLEIV- 459 (725)
Q Consensus 389 DlVIeavpe~~~~k~~v~-~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~-------~~~lveii- 459 (725)
|+|+.++|... ...++ .++.+.++++++| +.++++.+...........+++-+.|..|.+ .+..+...
T Consensus 75 DVVvLaVPd~~--~~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~ 151 (330)
T PRK05479 75 DVIMILLPDEV--QAEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLI 151 (330)
T ss_pred CEEEEcCCHHH--HHHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEE
Confidence 99999999443 36777 7799999999988 7788888887665555556788888988887 44443332
Q ss_pred -cCCCCCHHHHHHHHHHHHHcCCeeE-----EEcC-C-cchh-----hhhhhHHHHHHHHHHH-HcCCCHHHHHH
Q 004891 460 -RTERTSAQVILDLMTVGKIIKKVPV-----VVGN-C-TGFA-----VNRAFFPYSQSARLLV-SLGVDVFRIDS 520 (725)
Q Consensus 460 -~~~~t~~e~~~~~~~l~~~lGk~~v-----~v~d-~-~Gfi-----~nRl~~a~~~Ea~~l~-~~Gv~~~dID~ 520 (725)
.+...+.++.+.+..++..+|.++. ..++ . .-.. .---+..++..+...+ +.|++|+...-
T Consensus 152 av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay~ 226 (330)
T PRK05479 152 AVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMAYF 226 (330)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 3555678999999999999998865 2222 1 1111 1112234555555444 55888876443
No 179
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.27 E-value=8.8e-11 Score=123.11 Aligned_cols=198 Identities=18% Similarity=0.259 Sum_probs=137.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHH----HHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-c
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT----IEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~----i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (725)
+||+|||.|..|...+.+|+..||+|+.+|+++++++...+. .+..|+.+++++..+ +|+++|+|+ +
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~--------gRl~fTtd~~~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLAS--------GRLRFTTDYEE 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhcccc--------CcEEEEcCHHH
Confidence 589999999999999999999999999999999999987654 244556666554332 579999999 5
Q ss_pred cccCCCEEEEeccC--------ChHHHHHHHHHHHHhCCCCeEEEecCCCCChHH---HhcccC--CCCc-E-EEEe---
Q 004891 384 EFKDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDLNI---VGEKTS--SQDR-I-IGAH--- 445 (725)
Q Consensus 384 ~l~~aDlVIeavpe--------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~---l~~~~~--~~~r-~-ig~h--- 445 (725)
+++++|++|+|||. |+.....+.++|.++++..++|+ +-||.|+.. +...+. .+.+ | +.+.
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV-~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEF 151 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV-IKSTVPVGTTEEVRAKIREENSGKDFEVASNPEF 151 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE-EcCCCCCCchHHHHHHHHhhcccCCceEecChHH
Confidence 78999999999975 55677788889999988877665 456666542 222111 1111 1 1111
Q ss_pred ---------cCCCCCCCCeeeEecCCCCCHHHHHHHHHHHHHc--CCeeEEEcC-----CcchhhhhhhH---HHHHHHH
Q 004891 446 ---------FFSPAHVMPLLEIVRTERTSAQVILDLMTVGKII--KKVPVVVGN-----CTGFAVNRAFF---PYSQSAR 506 (725)
Q Consensus 446 ---------~~~p~~~~~lveii~~~~t~~e~~~~~~~l~~~l--Gk~~v~v~d-----~~Gfi~nRl~~---a~~~Ea~ 506 (725)
|++|..+ |+... ++++.+.+.++++.+ ...|++..+ .-.+..|-++. +++||..
T Consensus 152 LREG~Av~D~~~PdRI-----ViG~~--~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia 224 (414)
T COG1004 152 LREGSAVYDFLYPDRI-----VIGVR--SERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIA 224 (414)
T ss_pred hcCcchhhhccCCCeE-----EEccC--ChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2455443 34332 344667777777654 455666533 33466676663 7889988
Q ss_pred HHHHc-CCCHHHHHHHH
Q 004891 507 LLVSL-GVDVFRIDSAI 522 (725)
Q Consensus 507 ~l~~~-Gv~~~dID~~~ 522 (725)
.+.+. |++..+|-..+
T Consensus 225 ~ice~~g~D~~~V~~gI 241 (414)
T COG1004 225 NICEKVGADVKQVAEGI 241 (414)
T ss_pred HHHHHhCCCHHHHHHHc
Confidence 77776 99999988876
No 180
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.23 E-value=2.4e-10 Score=118.60 Aligned_cols=179 Identities=11% Similarity=0.103 Sum_probs=124.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCc---EEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891 310 KVAVIGGGLMGSGIATAHILNNIY---VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (725)
Q Consensus 310 kIaVIG~G~mG~~iA~~l~~~G~~---V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (725)
||+|||+|.||.+|+..|.++|+. |.++|+++++.+...+. ......+++. +.+
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~----------------------~~~~~~~~~~~~~~ 59 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAER----------------------FPKVRIAKDNQAVV 59 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHH----------------------cCCceEeCCHHHHH
Confidence 799999999999999999999864 57999998886554221 0112223344 456
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCC
Q 004891 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS 465 (725)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~ 465 (725)
++||+||+|+| .+....++.++. +.++.+|+|..++.++..+...+....+.+..||+.|......+..+.+.
T Consensus 60 ~~aDvVilav~--p~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~--- 132 (258)
T PRK06476 60 DRSDVVFLAVR--PQIAEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPP--- 132 (258)
T ss_pred HhCCEEEEEeC--HHHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCC---
Confidence 88999999999 555677777762 46778888888899999998887665678888888777655444444332
Q ss_pred HHHHHHHHHHHHHcCCeeEEEcC--C------cchhhhhhhHHHHHHHHHHH-HcCCCHHHHHHHH
Q 004891 466 AQVILDLMTVGKIIKKVPVVVGN--C------TGFAVNRAFFPYSQSARLLV-SLGVDVFRIDSAI 522 (725)
Q Consensus 466 ~e~~~~~~~l~~~lGk~~v~v~d--~------~Gfi~nRl~~a~~~Ea~~l~-~~Gv~~~dID~~~ 522 (725)
.+.++++++.+|..+++..+ . .++..| ++.++.++.... +.|+++++...++
T Consensus 133 ---~~~~~~l~~~lG~~~~~~~e~~~d~~~a~~s~~a~--~~~~~~~~~~~~~~~Gl~~~~a~~~~ 193 (258)
T PRK06476 133 ---DPFVAALFDALGTAVECDSEEEYDLLAAASALMAT--YFGILETATGWLEEQGLKRQKARAYL 193 (258)
T ss_pred ---HHHHHHHHHhcCCcEEECChHhccceeehhccHHH--HHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 25789999999988775422 1 112222 223455555554 4589998877776
No 181
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.23 E-value=2.4e-10 Score=122.91 Aligned_cols=168 Identities=18% Similarity=0.209 Sum_probs=105.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (725)
|+||+|||+|.||+.+|..|+++|++|++||++++.++...+.... .....+ . .....+..+++. +.++
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~---~~~~~~-~------~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADREN---PRYLPG-I------KLPDNLRATTDLAEALA 70 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcc---cccCCC-C------cCCCCeEEeCCHHHHHh
Confidence 3589999999999999999999999999999999887664321000 000000 0 000123344555 4678
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH-------HHhcccCCCCcEEEEecCCCCCC-----C-
Q 004891 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-------IVGEKTSSQDRIIGAHFFSPAHV-----M- 453 (725)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-------~l~~~~~~~~r~ig~h~~~p~~~-----~- 453 (725)
+||+||.|+|. .....++.++.+.+++++++++.++++... .+.+........ .....|... .
T Consensus 71 ~~D~vi~~v~~--~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~--~~~~~P~~~~~~~~g~ 146 (325)
T PRK00094 71 DADLILVAVPS--QALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPI--AVLSGPSFAKEVARGL 146 (325)
T ss_pred CCCEEEEeCCH--HHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCce--EEEECccHHHHHHcCC
Confidence 99999999994 567788889999888999888776555542 122222110011 111122211 1
Q ss_pred CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcc
Q 004891 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 491 (725)
Q Consensus 454 ~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G 491 (725)
+..-++.+ .+.+.++.+.++++..|..++...+..|
T Consensus 147 ~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~d~~g 182 (325)
T PRK00094 147 PTAVVIAS--TDEELAERVQELFHSPYFRVYTNTDVIG 182 (325)
T ss_pred CcEEEEEe--CCHHHHHHHHHHhCCCCEEEEecCCcch
Confidence 11112222 2688999999999999987766655443
No 182
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.21 E-value=2.9e-10 Score=120.03 Aligned_cols=200 Identities=11% Similarity=0.047 Sum_probs=137.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCC-hHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~-~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (725)
+||+|||+|.||.++|..|..+|++|+++++. .++.+++. +.| +...+..+.+++
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~-----------~~G-------------v~~~s~~ea~~~ 59 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKAT-----------EDG-------------FKVGTVEEAIPQ 59 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHH-----------HCC-------------CEECCHHHHHhc
Confidence 67999999999999999999999998876654 33433321 112 222233356789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCC-------CCeee-Ee
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHV-------MPLLE-IV 459 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~-------~~lve-ii 459 (725)
||+|+.++|+.. ....+.+++.+.++++. ++|...++++..+....+...+++.+.|..|... +..+. ++
T Consensus 60 ADiVvLaVpp~~-~~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~ 137 (314)
T TIGR00465 60 ADLIMNLLPDEV-QHEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLI 137 (314)
T ss_pred CCEEEEeCCcHh-HHHHHHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEE
Confidence 999999999443 34566677888888887 4577888999888777665567999999999974 65553 43
Q ss_pred -cCCCCCHHHHHHHHHHHHHcCCe-------eE--EEc-C----CcchhhhhhhHHHHH---HHHHHHHcCCCHHHHHHH
Q 004891 460 -RTERTSAQVILDLMTVGKIIKKV-------PV--VVG-N----CTGFAVNRAFFPYSQ---SARLLVSLGVDVFRIDSA 521 (725)
Q Consensus 460 -~~~~t~~e~~~~~~~l~~~lGk~-------~v--~v~-d----~~Gfi~nRl~~a~~~---Ea~~l~~~Gv~~~dID~~ 521 (725)
.+...+.+..+.+..++..+|.. .. .+. + ..+. .=-.-+|+. |++ ++.|++++.-...
T Consensus 138 a~~~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l--~Gs~pa~v~~~~eal--v~~G~~~e~A~~~ 213 (314)
T TIGR00465 138 AVEQDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVL--CGGLTALIKAGFDTL--VEAGYQPELAYFE 213 (314)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhH--HhHHHHHHHHHHHHH--HHcCCCHHHHHHH
Confidence 56667899999999999999988 31 111 1 1110 001112222 444 7889999887766
Q ss_pred H-HhcCCCccHHHHHHhhchH
Q 004891 522 I-RSFGLPIGPFQLLDLAGYG 541 (725)
Q Consensus 522 ~-~~~G~p~Gpf~~~D~~Gld 541 (725)
. ..+ .|...++-..|+.
T Consensus 214 ~~~~~---~g~~~l~~e~g~~ 231 (314)
T TIGR00465 214 TVHEL---KLIVDLIYEGGIT 231 (314)
T ss_pred HHHHH---HHHHHHHHHhcHH
Confidence 5 333 4777777777764
No 183
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.20 E-value=5.5e-10 Score=115.05 Aligned_cols=188 Identities=13% Similarity=0.127 Sum_probs=129.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCC---c-EEEEeCC-hHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc
Q 004891 308 VRKVAVIGGGLMGSGIATAHILNNI---Y-VVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~G~---~-V~~~d~~-~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (725)
..||+|||+|.||.+++..++++|. + |++++++ +++++...+. .+ +..+++.
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------~~-------------~~~~~~~ 60 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQAR----------YN-------------VSTTTDW 60 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHH----------cC-------------cEEeCCh
Confidence 4689999999999999999998873 3 7788874 5665443211 01 2223344
Q ss_pred -ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEe-c
Q 004891 383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-R 460 (725)
Q Consensus 383 -~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii-~ 460 (725)
+.+.++|+||.|+| .....++++++.+.++ +.+|+|.+.++++..+...+....+++.+||..|......+... .
T Consensus 61 ~~~~~~~DiViiavp--~~~~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~ 137 (245)
T PRK07634 61 KQHVTSVDTIVLAMP--PSAHEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTM 137 (245)
T ss_pred HHHHhcCCEEEEecC--HHHHHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEee
Confidence 45788999999999 5666888888887765 56788999999999998887665678889997776555444333 4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeeEEEcCCcchhhh-------hhhHHHHHHHHH-HHHcCCCHHHHHHHH
Q 004891 461 TERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVN-------RAFFPYSQSARL-LVSLGVDVFRIDSAI 522 (725)
Q Consensus 461 ~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~n-------Rl~~a~~~Ea~~-l~~~Gv~~~dID~~~ 522 (725)
....+++..+.+++++..+|..+.+ .+..-.... -+++.++..... .++.|+++++-.+++
T Consensus 138 ~~~~~~~~~~~v~~lf~~~G~~~~~-~e~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~ 206 (245)
T PRK07634 138 GQSVNETHKETLQLILKGIGTSQLC-TEEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLV 206 (245)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEE-CHHHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 5567899999999999999998864 332111111 122222222222 345588888877765
No 184
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.20 E-value=2.5e-12 Score=142.15 Aligned_cols=161 Identities=16% Similarity=0.154 Sum_probs=120.1
Q ss_pred ceEEEEcCCCCcHHHHH--HH----HHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc
Q 004891 309 RKVAVIGGGLMGSGIAT--AH----ILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~--~l----~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (725)
.||+|||+|.||.+.+. .+ ...|++|++||++++.++.....+++.+... + . ..++..++|+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~---~-~--------~~~I~~ttD~ 68 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEEL---G-A--------PLKIEATTDR 68 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhc---C-C--------CeEEEEeCCH
Confidence 37999999999998665 23 4568899999999999888666554443321 1 1 1356778886
Q ss_pred -ccccCCCEEEEecc----------CChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccC--CCCcEEEEecCCC
Q 004891 383 -SEFKDVDMVIEAVI----------ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS--SQDRIIGAHFFSP 449 (725)
Q Consensus 383 -~~l~~aDlVIeavp----------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~--~~~r~ig~h~~~p 449 (725)
+++++||+||++++ |++.+|..+++++.+.+.+++++.+++|...+.+++..+. .| +.+.+||.||
T Consensus 69 ~eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~tNP 147 (423)
T cd05297 69 REALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYANP 147 (423)
T ss_pred HHHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcCCh
Confidence 78899999999998 4588999999999999999999999999999999988776 36 8999999999
Q ss_pred CCCC-----CeeeEecCCCCCHHHHHHHHHHHHHcCCee
Q 004891 450 AHVM-----PLLEIVRTERTSAQVILDLMTVGKIIKKVP 483 (725)
Q Consensus 450 ~~~~-----~lveii~~~~t~~e~~~~~~~l~~~lGk~~ 483 (725)
+..+ +..+ ++.-++..........+.+.+|..+
T Consensus 148 v~i~t~~~~k~~~-~rviG~c~~~~~~~~~~a~~l~~~~ 185 (423)
T cd05297 148 MAELTWALNRYTP-IKTVGLCHGVQGTAEQLAKLLGEPP 185 (423)
T ss_pred HHHHHHHHHHhCC-CCEEEECCcHHHHHHHHHHHhCCCH
Confidence 9665 3332 1211122225556666777777643
No 185
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.18 E-value=9.9e-11 Score=118.26 Aligned_cols=145 Identities=21% Similarity=0.228 Sum_probs=106.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEEcc
Q 004891 28 LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEG 107 (725)
Q Consensus 28 l~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G 107 (725)
-+...+.+|.++|+++..|++|++|||+..++.| ++.+++++. +.+ +.+...+|||||.++|
T Consensus 26 ~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el~----------------~~i-~~~~~~~kpVia~~~~ 87 (222)
T cd07018 26 SSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEELR----------------QAL-ERFRASGKPVIAYADG 87 (222)
T ss_pred cCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHHH----------------HHH-HHHHHhCCeEEEEeCC
Confidence 3567899999999999999999999999988877 777766652 334 4466789999999998
Q ss_pred cccchhhHHhhhcCEEEeeCCceEeCcccc------------cCCCCC---------chhhc-----------hH-----
Q 004891 108 LALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPG---------FGGTQ-----------RL----- 150 (725)
Q Consensus 108 ~a~GgG~~lalacD~~ia~~~a~~~~pe~~------------~Gl~p~---------~g~~~-----------~l----- 150 (725)
|.++|+.|+++||.++|.+.+.|+...+. +|+-+. .+..+ .+
T Consensus 88 -~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l~ 166 (222)
T cd07018 88 -YSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLD 166 (222)
T ss_pred -CCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHHH
Confidence 88999999999999999999999885432 222221 00000 00
Q ss_pred ------------hhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHH
Q 004891 151 ------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKV 192 (725)
Q Consensus 151 ------------~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 192 (725)
.|.+...... -+..|+.+++++|++.||||++...+++.+.
T Consensus 167 ~~~~~f~~~Va~~R~~~~~~~~-~~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~ 219 (222)
T cd07018 167 SLWDQYLADVAASRGLSPDALE-ALIDLGGDSAEEALEAGLVDGLAYRDELEAR 219 (222)
T ss_pred HHHHHHHHHHHHHcCCCHHHHH-HHHHcCCcHHHHHHHCCCCCcCCcHHHHHHH
Confidence 1112222232 3445999999999999999999977777654
No 186
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.18 E-value=1e-09 Score=118.82 Aligned_cols=168 Identities=11% Similarity=0.075 Sum_probs=105.9
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCC-CC---HHHHHHhhcCcccccCcc
Q 004891 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LT---QDKANNALKMLKGVLDYS 383 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~-~~---~~~~~~~~~~i~~~~~~~ 383 (725)
++||+|||+|.||+.+|..|+++|++|++||+++. .+... +.|. +. ..+......++..+++.+
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELR-----------AHGLTLTDYRGRDVRVPPSAIAFSTDPA 69 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHH-----------hcCceeecCCCcceecccceeEeccChh
Confidence 46899999999999999999999999999999643 22211 1111 00 000000112344455666
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH-HHhcccCCCCcEEEEecCCCCCCCCe-e-----
Q 004891 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRIIGAHFFSPAHVMPL-L----- 456 (725)
Q Consensus 384 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-~l~~~~~~~~r~ig~h~~~p~~~~~l-v----- 456 (725)
.+.++|+||+|++.. ...++++++.+.++++++|++.++++... .+...+.....+.+.+++......|. +
T Consensus 70 ~~~~~D~vil~vk~~--~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~ 147 (341)
T PRK08229 70 ALATADLVLVTVKSA--ATADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTS 147 (341)
T ss_pred hccCCCEEEEEecCc--chHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCC
Confidence 778999999999843 45678889999999999888877776643 45555443223344444321111110 0
Q ss_pred -eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcch
Q 004891 457 -EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF 492 (725)
Q Consensus 457 -eii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gf 492 (725)
++.-+. .+.++.+.++++..|....+.+|..+.
T Consensus 148 g~l~~~~---~~~~~~~~~~l~~~g~~~~~~~di~~~ 181 (341)
T PRK08229 148 GALAIEA---SPALRPFAAAFARAGLPLVTHEDMRAV 181 (341)
T ss_pred CceEecC---CchHHHHHHHHHhcCCCceecchhHHH
Confidence 111121 245688999999999888888875543
No 187
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.18 E-value=1.3e-09 Score=121.35 Aligned_cols=203 Identities=15% Similarity=0.129 Sum_probs=129.7
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCC--CcEEEEeCChHHHHHHHHHH----HHHHHhhHHcCCCCHHHHHHhhcCcccccC
Q 004891 308 VRKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLD 381 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~G--~~V~~~d~~~e~~~~~~~~i----~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 381 (725)
++||+|||+|.+|..+|..|+++| ++|+++|+++++++...+.. +..+++++.++ .-.++.++++
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~---------~~~~l~~t~~ 71 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQC---------RGKNLFFSTD 71 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHh---------hcCCEEEEcC
Confidence 468999999999999999999984 78999999999988754321 11111111110 1134788888
Q ss_pred c-ccccCCCEEEEeccCCh-------------HHHHHHHHHHHHhCCCCeEEEecCCCCChH---HHhcccCC---CCcE
Q 004891 382 Y-SEFKDVDMVIEAVIESV-------------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSS---QDRI 441 (725)
Q Consensus 382 ~-~~l~~aDlVIeavpe~~-------------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~---~~r~ 441 (725)
+ +++++||++|.|||.+. .....+.++|.++++++++|+. .|+.++. .+...+.. ...|
T Consensus 72 ~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~-~STvp~Gtt~~~~~~l~~~~~g~~f 150 (473)
T PLN02353 72 VEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVE-KSTVPVKTAEAIEKILTHNSKGINF 150 (473)
T ss_pred HHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEE-eCCCCCChHHHHHHHHHhhCCCCCe
Confidence 7 56899999999996433 3667788889999999888764 3444433 22221111 1111
Q ss_pred EEEecCCCCCCCCe---------eeE-ecCCC--CCHHHHHHHHHHHHHcCC-eeEEEc-----CCcchhhhhh---hHH
Q 004891 442 IGAHFFSPAHVMPL---------LEI-VRTER--TSAQVILDLMTVGKIIKK-VPVVVG-----NCTGFAVNRA---FFP 500 (725)
Q Consensus 442 ig~h~~~p~~~~~l---------vei-i~~~~--t~~e~~~~~~~l~~~lGk-~~v~v~-----d~~Gfi~nRl---~~a 500 (725)
--. ++|-.+.+. .-+ +.+.. +.+++.+.++++++.+-+ .++.+. |...++.|-+ -.+
T Consensus 151 ~v~--~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Ia 228 (473)
T PLN02353 151 QIL--SNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRIS 228 (473)
T ss_pred EEE--ECCCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHH
Confidence 111 122221111 113 35432 126688999999998753 455543 3334566754 358
Q ss_pred HHHHHHHHHHc-CCCHHHHHHHH
Q 004891 501 YSQSARLLVSL-GVDVFRIDSAI 522 (725)
Q Consensus 501 ~~~Ea~~l~~~-Gv~~~dID~~~ 522 (725)
++||...+.+. |+++.+|-.++
T Consensus 229 f~NEla~lce~~giD~~eV~~~~ 251 (473)
T PLN02353 229 SVNAMSALCEATGADVSQVSHAV 251 (473)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHh
Confidence 99998777766 99999988888
No 188
>PLN02712 arogenate dehydrogenase
Probab=99.17 E-value=6.6e-10 Score=128.88 Aligned_cols=154 Identities=11% Similarity=0.041 Sum_probs=108.6
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (725)
Q Consensus 307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (725)
..+||+|||+|.||.++|..|.+.|++|++||++.+. +.+. +.| +...++. +.+
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~-----------~~G-------------v~~~~~~~el~ 422 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQ-----------KLG-------------VSYFSDADDLC 422 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHH-----------HcC-------------CeEeCCHHHHH
Confidence 3468999999999999999999999999999998543 2211 112 1123344 334
Q ss_pred c-CCCEEEEeccCChHHHHHHHHHHHH-hCCCCeEEEecCCC--CChHHHhcccCCCCcEEEEecCCCCCCCC-----ee
Q 004891 386 K-DVDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAHVMP-----LL 456 (725)
Q Consensus 386 ~-~aDlVIeavpe~~~~k~~v~~~l~~-~~~~~~ii~s~tS~--~~~~~l~~~~~~~~r~ig~h~~~p~~~~~-----lv 456 (725)
. +||+||.|+| ......++.++.. .++++++|++.+|+ .++..+........+|++.||+.++.... ..
T Consensus 423 ~~~aDvVILavP--~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~ 500 (667)
T PLN02712 423 EEHPEVILLCTS--ILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLA 500 (667)
T ss_pred hcCCCEEEECCC--hHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhh
Confidence 3 5899999999 5677788888765 57889999887776 44555555555555799999987776531 11
Q ss_pred -----eEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004891 457 -----EIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (725)
Q Consensus 457 -----eii~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 487 (725)
-++.++....+.++.+.+++..+|..++.+.
T Consensus 501 ~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms 536 (667)
T PLN02712 501 FVFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMS 536 (667)
T ss_pred hhccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeC
Confidence 1123334455667777899999999998884
No 189
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.15 E-value=1.4e-09 Score=112.79 Aligned_cols=145 Identities=16% Similarity=0.138 Sum_probs=111.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC----cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccc
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~----~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (725)
+||+|||+|+||++|+..|.++|. +|+++|++++.. + .....++.+.
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-----------------~------------~~~~~~~~~~ 54 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-----------------P------------FVYLQSNEEL 54 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-----------------C------------eEEeCChHHH
Confidence 479999999999999999999873 499999986541 0 0111122245
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeee-EecCCC
Q 004891 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTER 463 (725)
Q Consensus 385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lve-ii~~~~ 463 (725)
+.+||+||.|+| +.....++.++.++++++ +|+|..+++..+.+...+....+++...|..|........ ++++..
T Consensus 55 ~~~~D~Vilavk--p~~~~~vl~~i~~~l~~~-~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~~ 131 (260)
T PTZ00431 55 AKTCDIIVLAVK--PDLAGKVLLEIKPYLGSK-LLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANNN 131 (260)
T ss_pred HHhCCEEEEEeC--HHHHHHHHHHHHhhccCC-EEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCCC
Confidence 678999999998 888889999998877665 5568888999988888776555677788877776665544 446667
Q ss_pred CCHHHHHHHHHHHHHcCCeeEE
Q 004891 464 TSAQVILDLMTVGKIIKKVPVV 485 (725)
Q Consensus 464 t~~e~~~~~~~l~~~lGk~~v~ 485 (725)
++++..+.++.+++.+|....+
T Consensus 132 ~~~~~~~~v~~l~~~~G~~~~v 153 (260)
T PTZ00431 132 VDSTDKKKVIDIFSACGIIQEI 153 (260)
T ss_pred CCHHHHHHHHHHHHhCCcEEEE
Confidence 7899999999999999987755
No 190
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.13 E-value=7.3e-10 Score=132.14 Aligned_cols=156 Identities=17% Similarity=0.188 Sum_probs=116.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCC--CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cc
Q 004891 308 VRKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~G--~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (725)
++||+|||+|.||.++|..+.+.| ++|++||+++++++.+. +.|... ...++. +.
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~ 60 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAV-----------SLGVID-----------RGEEDLAEA 60 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHH-----------HCCCCC-----------cccCCHHHH
Confidence 588999999999999999999999 48999999998866542 122110 112233 45
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC--ChHHHhcccC-CCCcEEEEecCCCCC----------
Q 004891 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS-SQDRIIGAHFFSPAH---------- 451 (725)
Q Consensus 385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~-~~~r~ig~h~~~p~~---------- 451 (725)
+++||+||+|+| .+...++++++.+.++++++|++.+|+. ....+.+.+. ...||++.||...+.
T Consensus 61 ~~~aDvVilavp--~~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~ 138 (735)
T PRK14806 61 VSGADVIVLAVP--VLAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANAD 138 (735)
T ss_pred hcCCCEEEECCC--HHHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhH
Confidence 789999999999 5678899999999888888876544432 2445554443 356899999975222
Q ss_pred --CCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004891 452 --VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (725)
Q Consensus 452 --~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 487 (725)
..+.+.+++...++++..+.+.++++.+|..++++.
T Consensus 139 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~ 176 (735)
T PRK14806 139 LFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHMD 176 (735)
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 233456788888899999999999999999988884
No 191
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.10 E-value=5.2e-10 Score=108.25 Aligned_cols=145 Identities=24% Similarity=0.334 Sum_probs=101.0
Q ss_pred EEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004891 16 AIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (725)
Q Consensus 16 ~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (725)
.+|+++. .+++...+.|.++|+++++++ ++.|||.=. |.|+++. ....++ +.|.
T Consensus 2 ~vi~i~g----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~in----spGG~v~----------------~~~~I~-~~l~ 55 (178)
T cd07021 2 YVIPIEG----EIDPGLAAFVERALKEAKEEG-ADAVVLDID----TPGGRVD----------------SALEIV-DLIL 55 (178)
T ss_pred EEEEEee----EECHHHHHHHHHHHHHHHhCC-CCeEEEEEE----CcCCCHH----------------HHHHHH-HHHH
Confidence 4566644 467788888999999999876 677777411 1122222 122445 6688
Q ss_pred hCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhh--------ch------HhhhhC--HHHH
Q 004891 96 DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGT--------QR------LPRLVG--LSKA 159 (725)
Q Consensus 96 ~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~--------~~------l~r~vG--~~~a 159 (725)
.+++|||+.|+|.|.++|+.++++||+++|++++.|+.+.+- +..++. .. +.+.-| ...+
T Consensus 56 ~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v----~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~~~a 131 (178)
T cd07021 56 NSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPI----PGDGNGAADEKVQSYWRAKMRAAAEKKGRDPDIA 131 (178)
T ss_pred hCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeE----cCCCccchhHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 999999999999999999999999999999999999988443 333220 11 111122 3445
Q ss_pred HHHHHcC-------------CCCCHHHHHHcCCcceecC-cchHH
Q 004891 160 IEMMLLS-------------KSITSEEGWKLGLIDAVVT-SEELL 190 (725)
Q Consensus 160 ~~l~l~g-------------~~~~a~eA~~~Glv~~vv~-~~~l~ 190 (725)
..|+-.. -.++++||++.|++|.+.+ .++|.
T Consensus 132 ~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~~~~ll 176 (178)
T cd07021 132 EAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDELL 176 (178)
T ss_pred HHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECCHHHHh
Confidence 5555544 2799999999999999985 34443
No 192
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.10 E-value=1.5e-09 Score=109.71 Aligned_cols=163 Identities=16% Similarity=0.114 Sum_probs=107.6
Q ss_pred ceEEEEc-CCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891 309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (725)
Q Consensus 309 ~kIaVIG-~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (725)
+||+||| +|.||+++|..|+++|++|+++++++++++........ .....+. . ..+..+++.+.+++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~---~~~~~g~-~--------~~~~~~~~~ea~~~ 68 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALE---ELGHGGS-D--------IKVTGADNAEAAKR 68 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHh---hccccCC-C--------ceEEEeChHHHHhc
Confidence 3799997 89999999999999999999999999887664332111 0001110 0 01122233467889
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh-----------------HHHhcccCCCCcEEEEecCCCC
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-----------------NIVGEKTSSQDRIIGAHFFSPA 450 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-----------------~~l~~~~~~~~r~ig~h~~~p~ 450 (725)
+|+||.|+| .....+++.++.+.++. ++|++.+.++.. +.+++.+....+++....+.+.
T Consensus 69 aDvVilavp--~~~~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a 145 (219)
T TIGR01915 69 ADVVILAVP--WDHVLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSA 145 (219)
T ss_pred CCEEEEECC--HHHHHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCH
Confidence 999999999 66667778888776654 777777776654 2344444332567766443222
Q ss_pred CC-------CCeeeEecCCCCCHHHHHHHHHHHHHc-CCeeEEEcC
Q 004891 451 HV-------MPLLEIVRTERTSAQVILDLMTVGKII-KKVPVVVGN 488 (725)
Q Consensus 451 ~~-------~~lveii~~~~t~~e~~~~~~~l~~~l-Gk~~v~v~d 488 (725)
.. .+....+.|+ ++++.+.+..+.+.+ |..|+.++.
T Consensus 146 ~~~~~~~~~~~~~~~v~Gd--d~~ak~~v~~L~~~~~G~~~vd~G~ 189 (219)
T TIGR01915 146 VLLQDVDDEVDCDVLVCGD--DEEAKEVVAELAGRIDGLRALDAGP 189 (219)
T ss_pred HHhcCCCCCCCCCEEEECC--CHHHHHHHHHHHHhcCCCCcccCCc
Confidence 11 1122234554 577899999999999 999998764
No 193
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.06 E-value=9.3e-10 Score=118.36 Aligned_cols=166 Identities=14% Similarity=0.099 Sum_probs=98.2
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (725)
++||+|||+|.||.+||..|+++|++|++|+++++..+...+...+. ... .+. ....++..++++ +.++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~--~~~-~g~-------~~~~~~~~~~~~~e~~~ 73 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENR--EYL-PGV-------ALPAELYPTADPEEALA 73 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCccc--ccC-CCC-------cCCCCeEEeCCHHHHHc
Confidence 35899999999999999999999999999999988766643211000 000 010 001123344555 5578
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC-----hHHHhcccCC--CCcEE-EEecCCCCCC---CCe
Q 004891 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID-----LNIVGEKTSS--QDRII-GAHFFSPAHV---MPL 455 (725)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-----~~~l~~~~~~--~~r~i-g~h~~~p~~~---~~l 455 (725)
+||+||+|+|... .++++ +.+++++++++.++++. ...+++.+.. ..++. ..-|..+... .+.
T Consensus 74 ~aD~Vi~~v~~~~--~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~ 147 (328)
T PRK14618 74 GADFAVVAVPSKA--LRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPA 147 (328)
T ss_pred CCCEEEEECchHH--HHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCe
Confidence 9999999999552 23443 45667777776666544 2234333321 11111 1112111111 012
Q ss_pred eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcc
Q 004891 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 491 (725)
Q Consensus 456 veii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G 491 (725)
+.++.+ .+++.++.++++++..|..+.+..|.-|
T Consensus 148 ~~~~~~--~~~~~~~~v~~ll~~~~~~v~~~~di~g 181 (328)
T PRK14618 148 ATVVAS--PEPGLARRVQAAFSGPSFRVYTSRDRVG 181 (328)
T ss_pred EEEEEe--CCHHHHHHHHHHhCCCcEEEEecCCccc
Confidence 233333 2688999999999999987775444333
No 194
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.04 E-value=2.5e-09 Score=110.68 Aligned_cols=141 Identities=17% Similarity=0.139 Sum_probs=101.6
Q ss_pred HHHHHHHCC--CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCCCEEEEeccCChH
Q 004891 323 IATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVP 400 (725)
Q Consensus 323 iA~~l~~~G--~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVIeavpe~~~ 400 (725)
||..|.++| ++|++||++++.++.+. +.|.++ ...++.+.+++||+||.|+| +.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~~~~DlvvlavP--~~ 56 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAAL-----------ELGIID-----------EASTDIEAVEDADLVVLAVP--VS 56 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHH-----------HTTSSS-----------EEESHHHHGGCCSEEEE-S---HH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHH-----------HCCCee-----------eccCCHhHhcCCCEEEEcCC--HH
Confidence 688999999 69999999999877763 334322 01122467899999999999 88
Q ss_pred HHHHHHHHHHHhCCCCeEEEecCCCC--ChHHHhcccCCCCcEEEEecCCCC------------CCCCeeeEecCCCCCH
Q 004891 401 LKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPA------------HVMPLLEIVRTERTSA 466 (725)
Q Consensus 401 ~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~~~~r~ig~h~~~p~------------~~~~lveii~~~~t~~ 466 (725)
....+++++.++++++++|++.+|+. ++..+........+|+|.||...+ ..+..+-+++++.+++
T Consensus 57 ~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~ 136 (258)
T PF02153_consen 57 AIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDP 136 (258)
T ss_dssp HHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-H
T ss_pred HHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChH
Confidence 89999999999999999998776653 334444555556789999997655 2345677888998999
Q ss_pred HHHHHHHHHHHHcCCeeEEEc
Q 004891 467 QVILDLMTVGKIIKKVPVVVG 487 (725)
Q Consensus 467 e~~~~~~~l~~~lGk~~v~v~ 487 (725)
+.++.+.++++.+|..++.+.
T Consensus 137 ~~~~~~~~l~~~~Ga~~~~~~ 157 (258)
T PF02153_consen 137 EALELVEELWEALGARVVEMD 157 (258)
T ss_dssp HHHHHHHHHHHHCT-EEEE--
T ss_pred HHHHHHHHHHHHCCCEEEEcC
Confidence 999999999999999988873
No 195
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.03 E-value=4.8e-10 Score=116.27 Aligned_cols=109 Identities=22% Similarity=0.256 Sum_probs=85.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (725)
++||+|||+|.||+++|..|+++|++|++|.++++.+++..+. +...+++. +.. ....+..++|+ ++++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~--~~N~~yLp-~i~-------lp~~l~at~Dl~~a~~ 70 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINET--RENPKYLP-GIL-------LPPNLKATTDLAEALD 70 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhc--CcCccccC-Ccc-------CCcccccccCHHHHHh
Confidence 3689999999999999999999999999999999998875432 11111121 111 12356778888 6678
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh
Q 004891 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 428 (725)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~ 428 (725)
+||+|+.+|| .+..+++++++...+++++++++.+.++..
T Consensus 71 ~ad~iv~avP--s~~~r~v~~~l~~~l~~~~~iv~~sKGie~ 110 (329)
T COG0240 71 GADIIVIAVP--SQALREVLRQLKPLLLKDAIIVSATKGLEP 110 (329)
T ss_pred cCCEEEEECC--hHHHHHHHHHHhhhccCCCeEEEEeccccC
Confidence 8999999999 889999999998889999999887776554
No 196
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.03 E-value=4e-09 Score=112.34 Aligned_cols=140 Identities=16% Similarity=0.203 Sum_probs=93.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (725)
+||+|||+|.||.++|..|+++|++|++|++++.. ++ +.+++
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~~-------------------------------------~~~~~~~~ 47 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSGL-------------------------------------SLAAVLAD 47 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCCC-------------------------------------CHHHHHhc
Confidence 57999999999999999999999999999998531 11 34578
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHh-CCCCeEEEecCCCCChHH------HhcccCCCCcEEEEecCCCCC------CCC
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTIDLNI------VGEKTSSQDRIIGAHFFSPAH------VMP 454 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~-~~~~~ii~s~tS~~~~~~------l~~~~~~~~r~ig~h~~~p~~------~~~ 454 (725)
+|+||.|+|. ...+.++.++.++ +++++++++.++++.+.. .....-...+++.+ ..|.. ..+
T Consensus 48 advvi~~vp~--~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i--~gp~~a~ei~~~~~ 123 (308)
T PRK14619 48 ADVIVSAVSM--KGVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVL--SGPNLSKEIQQGLP 123 (308)
T ss_pred CCEEEEECCh--HHHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEE--ECCCcHHHHhcCCC
Confidence 9999999995 4677788888764 678888887766454332 11111011122211 11211 111
Q ss_pred eeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcc
Q 004891 455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 491 (725)
Q Consensus 455 lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G 491 (725)
..-++.+. +.+..+.+++++...|..++..+|..|
T Consensus 124 ~~~~~ag~--~~~~~~~v~~ll~~~~~~~~~~~d~~G 158 (308)
T PRK14619 124 AATVVASR--DLAAAETVQQIFSSERFRVYTNSDPLG 158 (308)
T ss_pred eEEEEEeC--CHHHHHHHHHHhCCCcEEEEecCCchh
Confidence 22233332 688999999999999988876666444
No 197
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.01 E-value=3.3e-08 Score=101.68 Aligned_cols=147 Identities=18% Similarity=0.125 Sum_probs=96.3
Q ss_pred cHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccCCCEEEEeccCC
Q 004891 320 GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIES 398 (725)
Q Consensus 320 G~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aDlVIeavpe~ 398 (725)
|.+||.+|+++||+|++||+++++++... .+.+.+.| ...+++. +++++||+||.|+|++
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~------~e~LaeaG-------------A~~AaS~aEAAa~ADVVIL~LPd~ 92 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDL------WKKVEDAG-------------VKVVSDDKEAAKHGEIHVLFTPFG 92 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhh------hHHHHHCC-------------CeecCCHHHHHhCCCEEEEecCCH
Confidence 88999999999999999999987654211 01112223 2223333 7789999999999966
Q ss_pred hHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccC----CC---CcEEEEecCCCC-CCCCeeeEecC------CCC
Q 004891 399 VPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS----SQ---DRIIGAHFFSPA-HVMPLLEIVRT------ERT 464 (725)
Q Consensus 399 ~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~----~~---~r~ig~h~~~p~-~~~~lveii~~------~~t 464 (725)
..+. +++..+.+.++++++|+. +||+++..+...+. .. -.+..+||-.-| ....-.-++.| ...
T Consensus 93 aaV~-eVl~GLaa~L~~GaIVID-~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A 170 (341)
T TIGR01724 93 KGTF-SIARTIIEHVPENAVICN-TCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGKEMA 170 (341)
T ss_pred HHHH-HHHHHHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCceeeeccccccccccC
Confidence 5554 445778888999998864 56777665544332 12 234555653211 11111123322 224
Q ss_pred CHHHHHHHHHHHHHcCCeeEEEc
Q 004891 465 SAQVILDLMTVGKIIKKVPVVVG 487 (725)
Q Consensus 465 ~~e~~~~~~~l~~~lGk~~v~v~ 487 (725)
++|.++++.++.+..|+.+.++.
T Consensus 171 ~ee~i~~~~el~~~~~~~~~~~p 193 (341)
T TIGR01724 171 TEEQISKCVELAKSTGKKAYVVP 193 (341)
T ss_pred CHHHHHHHHHHHHHhCCCeeecc
Confidence 89999999999999999999873
No 198
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.99 E-value=1.4e-09 Score=106.36 Aligned_cols=108 Identities=20% Similarity=0.239 Sum_probs=74.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHH--------HHHHHHhhHHcCCCCHHHHHHhhcCccccc
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT--------IEANVRGLVTRGKLTQDKANNALKMLKGVL 380 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~--------i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 380 (725)
+||+|||+|.+|..+|..|+++|++|+++|+|++.++...+. +...+.+... -+++.+++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~------------~~~l~~t~ 68 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVS------------AGRLRATT 68 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHH------------TTSEEEES
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccc------------cccchhhh
Confidence 589999999999999999999999999999999988875432 1111111111 25778888
Q ss_pred Cc-ccccCCCEEEEeccC--------ChHHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 004891 381 DY-SEFKDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (725)
Q Consensus 381 ~~-~~l~~aDlVIeavpe--------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 429 (725)
+. +++++||++|.|||. |......+.+.|.+.++++++|+- -||.++.
T Consensus 69 ~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~-~STvppG 125 (185)
T PF03721_consen 69 DIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVI-ESTVPPG 125 (185)
T ss_dssp EHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEE-SSSSSTT
T ss_pred hhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEE-ccEEEEe
Confidence 87 458999999999974 456677888999999999998764 4555544
No 199
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.99 E-value=3.7e-09 Score=117.16 Aligned_cols=179 Identities=13% Similarity=0.072 Sum_probs=119.4
Q ss_pred CcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcc-c---ccCCCEEEEe
Q 004891 319 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-E---FKDVDMVIEA 394 (725)
Q Consensus 319 mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~---l~~aDlVIea 394 (725)
||..||.+|+++|++|++|||++++.+...+. .+. -..+....+++ . ++.+|+||.|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~----------~g~---------~~g~~~~~s~~e~v~~l~~~~~Ii~m 61 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAE----------EGK---------GKKIVPAYTLEEFVASLEKPRKILLM 61 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHh----------hCC---------CCCeEeeCCHHHHHhhCCCCCEEEEE
Confidence 89999999999999999999999998765320 010 01133344442 2 3358999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHH--HhcccCCCCcEEEEecCCCCCCCCe------eeEecCCCCCH
Q 004891 395 VIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI--VGEKTSSQDRIIGAHFFSPAHVMPL------LEIVRTERTSA 466 (725)
Q Consensus 395 vpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~--l~~~~~~~~r~ig~h~~~p~~~~~l------veii~~~~t~~ 466 (725)
||.+..+. +++..+.+.+.++.||+..+++.+... ..+.+.. .|+||+..|..+.. .-+++|. ++
T Consensus 62 v~~g~~v~-~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~----~Gi~fvdapVSGG~~gA~~G~siM~GG--~~ 134 (459)
T PRK09287 62 VKAGAPVD-AVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAE----KGIHFIGMGVSGGEEGALHGPSIMPGG--QK 134 (459)
T ss_pred CCCchHHH-HHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh----cCCeEEecCCCCCHHHHhcCCEEEEeC--CH
Confidence 99776654 456888899999998886655444332 2222321 25666544433211 1344444 69
Q ss_pred HHHHHHHHHHHHcCCee-------EEEcCC-cch----hhhhhhHHH---HHHHHHHHHc--CCCHHHHHHHHH
Q 004891 467 QVILDLMTVGKIIKKVP-------VVVGNC-TGF----AVNRAFFPY---SQSARLLVSL--GVDVFRIDSAIR 523 (725)
Q Consensus 467 e~~~~~~~l~~~lGk~~-------v~v~d~-~Gf----i~nRl~~a~---~~Ea~~l~~~--Gv~~~dID~~~~ 523 (725)
++++.++++++.++..+ .++++. .|. +.|-+.+.. +.|++.+++. |++++++-.++.
T Consensus 135 ~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~ 208 (459)
T PRK09287 135 EAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFA 208 (459)
T ss_pred HHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99999999999999876 788763 222 334454433 4599988883 899999888874
No 200
>PLN02712 arogenate dehydrogenase
Probab=98.98 E-value=1e-08 Score=118.99 Aligned_cols=153 Identities=16% Similarity=0.109 Sum_probs=104.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc-
Q 004891 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF- 385 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l- 385 (725)
.+||+|||+|.||.++|..|.+.|++|++||++... +.+. +.| +...++. +.+
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~-----------~~G-------------v~~~~d~~e~~~ 106 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAAR-----------SLG-------------VSFFLDPHDLCE 106 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHH-----------HcC-------------CEEeCCHHHHhh
Confidence 358999999999999999999999999999998543 2211 111 1223344 323
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHH-HhCCCCeEEEecCCCCC--hHHHhcccCCCCcEEEEecCCCCCCC-----Ceee
Q 004891 386 KDVDMVIEAVIESVPLKQKIFSELE-KACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAHVM-----PLLE 457 (725)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~-~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~p~~~~-----~lve 457 (725)
.+||+||.|+| ......++.++. +.++++++|++.+|... ...+...+.....|++.||+..+... ....
T Consensus 107 ~~aDvViLavP--~~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~ 184 (667)
T PLN02712 107 RHPDVILLCTS--IISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRF 184 (667)
T ss_pred cCCCEEEEcCC--HHHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcE
Confidence 56999999999 667788888875 56788998887665432 23344444444469999997655411 1112
Q ss_pred Eec-----CCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004891 458 IVR-----TERTSAQVILDLMTVGKIIKKVPVVVG 487 (725)
Q Consensus 458 ii~-----~~~t~~e~~~~~~~l~~~lGk~~v~v~ 487 (725)
+.. .+....+.++.+.++++.+|..++.+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms 219 (667)
T PLN02712 185 VYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMS 219 (667)
T ss_pred EEeeccCCCccccHHHHHHHHHHHHHcCCEEEEeC
Confidence 222 222234567788899999999999884
No 201
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.97 E-value=3.9e-10 Score=107.66 Aligned_cols=105 Identities=23% Similarity=0.221 Sum_probs=77.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccCC
Q 004891 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV 388 (725)
Q Consensus 310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~a 388 (725)
||+|||+|.||.++|..|+++|++|++|.++++.++...+.- .....+.. ......+..++|+ ++++++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~-------~n~~~~~~---~~l~~~i~~t~dl~~a~~~a 70 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETR-------QNPKYLPG---IKLPENIKATTDLEEALEDA 70 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHT-------SETTTSTT---SBEETTEEEESSHHHHHTT-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhC-------CCCCCCCC---cccCcccccccCHHHHhCcc
Confidence 799999999999999999999999999999998777654310 00000110 0112356677887 678999
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC
Q 004891 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 426 (725)
Q Consensus 389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~ 426 (725)
|+||.++| ....+.+++++.+++++++++++.+.++
T Consensus 71 d~IiiavP--s~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 71 DIIIIAVP--SQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp SEEEE-S---GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cEEEeccc--HHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 99999999 7778899999999999999998888776
No 202
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=98.96 E-value=1.2e-09 Score=116.12 Aligned_cols=125 Identities=20% Similarity=0.324 Sum_probs=92.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (725)
+||+|||+|.||.++|..++..|+ +|+++|++++.+..- .++..... .......++..+++++++++
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~------~ld~~~~~------~~~~~~~~I~~~~d~~~l~~ 74 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGK------ALDISHSN------VIAGSNSKVIGTNNYEDIAG 74 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHH------HHHHHhhh------hccCCCeEEEECCCHHHhCC
Confidence 699999999999999999999996 999999999874321 11111110 00111235666678899999
Q ss_pred CCEEEEec-------------------cCChHHHHHHHHHHHHhCCCC-eEEEecCCCCChHHHhcccCCC-CcEEEEe
Q 004891 388 VDMVIEAV-------------------IESVPLKQKIFSELEKACPPH-CILATNTSTIDLNIVGEKTSSQ-DRIIGAH 445 (725)
Q Consensus 388 aDlVIeav-------------------pe~~~~k~~v~~~l~~~~~~~-~ii~s~tS~~~~~~l~~~~~~~-~r~ig~h 445 (725)
||+||+++ +++..+++++++++.+++++. .|++||.+.+....+......| .|++|++
T Consensus 75 aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 75 SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 99999955 567788999999999999664 4556888877777777666654 7888875
No 203
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.95 E-value=1.8e-08 Score=97.87 Aligned_cols=154 Identities=18% Similarity=0.151 Sum_probs=104.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChH-HHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e-~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (725)
|++++|+|.|.||+++|..|+++||+|++-.++.+ +.+.+.+.+ ...++..++.++++
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l---------------------~~~i~~~~~~dA~~ 59 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAAL---------------------GPLITGGSNEDAAA 59 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhh---------------------ccccccCChHHHHh
Confidence 57899999999999999999999999999966554 443332211 12345555667889
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC----------------hHH-HhcccCCCCcEEE-Eec--
Q 004891 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID----------------LNI-VGEKTSSQDRIIG-AHF-- 446 (725)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~----------------~~~-l~~~~~~~~r~ig-~h~-- 446 (725)
.||+||.+|| ......+.+++...+. +.||++.|..+. .++ +++.++.. +++. .|-
T Consensus 60 ~aDVVvLAVP--~~a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkAFn~i~ 135 (211)
T COG2085 60 LADVVVLAVP--FEAIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKAFNTIP 135 (211)
T ss_pred cCCEEEEecc--HHHHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhhhcccC
Confidence 9999999999 7778888899888766 788887665421 111 12222222 3322 111
Q ss_pred ----CCCCCC-CCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004891 447 ----FSPAHV-MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (725)
Q Consensus 447 ----~~p~~~-~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d 488 (725)
-+-+.. .+..-.++|. +.++.+.+.++.+.+|..|+-++.
T Consensus 136 a~~l~~~~~~~~~~~v~vagD--D~~Ak~~v~~L~~~iG~~~ld~G~ 180 (211)
T COG2085 136 AAVLADLAKPGGRRDVLVAGD--DAEAKAVVAELAEDIGFRPLDAGP 180 (211)
T ss_pred HHHhccCCCcCCceeEEEecC--cHHHHHHHHHHHHhcCcceeeccc
Confidence 111111 3344455665 788999999999999999998864
No 204
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=98.92 E-value=1.7e-09 Score=114.76 Aligned_cols=121 Identities=19% Similarity=0.317 Sum_probs=87.2
Q ss_pred EEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHH-HHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891 311 VAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK-TIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (725)
Q Consensus 311 IaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~-~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (725)
|+|||+|.||.++|..++..|+ +|+++|++++.++ +.. .+... ........+++.+++++++++|
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~-g~~~dl~~~------------~~~~~~~~~I~~t~d~~~l~dA 67 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQ-GKALDISQA------------APILGSDTKVTGTNDYEDIAGS 67 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHH-HHHHHHHHh------------hhhcCCCeEEEEcCCHHHhCCC
Confidence 6899999999999999999887 9999999987543 221 11110 0011112356666778889999
Q ss_pred CEEEEec--------------cCChHHHHHHHHHHHHhCCCCeE-EEecCCCCChHHHhcccCC-CCcEEEE
Q 004891 389 DMVIEAV--------------IESVPLKQKIFSELEKACPPHCI-LATNTSTIDLNIVGEKTSS-QDRIIGA 444 (725)
Q Consensus 389 DlVIeav--------------pe~~~~k~~v~~~l~~~~~~~~i-i~s~tS~~~~~~l~~~~~~-~~r~ig~ 444 (725)
|+||+++ +++..+++++++++.++++++.+ ++||.+.+....+...... +.|++|+
T Consensus 68 DiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGl 139 (300)
T cd01339 68 DVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGM 139 (300)
T ss_pred CEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEe
Confidence 9999977 67889999999999999977774 4577776666566555543 4577775
No 205
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.91 E-value=8.5e-10 Score=116.65 Aligned_cols=96 Identities=13% Similarity=0.127 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHH-HHHHHHHHHHHhCC---CCC
Q 004891 621 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANY-VYTSLKKWSQLYGN---FFK 696 (725)
Q Consensus 621 ~~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~-~~~~~~~~~~~~~~---~~~ 696 (725)
.-.|.||++.++++||++++++|++ |++|||.+|+.|+|+|...-|||+++|.+|+|. +.+.++++.+.+.. .+.
T Consensus 187 pGFi~NRl~~a~~~EA~~lv~eGva-s~edID~a~~~g~g~r~~~~Gpf~~~Dl~Gld~g~~~~~~~~g~~~~~~~~~~~ 265 (321)
T PRK07066 187 PGFIADRLLEALWREALHLVNEGVA-TTGEIDDAIRFGAGIRWSFMGTFLTYTLAGGDAGMRHFMQQFGPALELPWTKLV 265 (321)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCccCcCHHHHhhhcChHHHHHHHHHHhhhhhhHHHHhcC
Confidence 4479999999999999999999999 999999999999999855559999999999997 44555665544321 244
Q ss_pred CCHHHHHHHH-------------cCCCCCCCCCC
Q 004891 697 PSRFLEERAT-------------KGIPLSAPVSS 717 (725)
Q Consensus 697 p~~~l~~~~~-------------~g~gf~~~~~~ 717 (725)
+++++.++++ +..+||.|.|+
T Consensus 266 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~ 299 (321)
T PRK07066 266 APELTDALIDRVVEGTAEQQGPRSIKALERYRDE 299 (321)
T ss_pred CCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4545555552 34557777554
No 206
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.90 E-value=7.9e-09 Score=93.84 Aligned_cols=114 Identities=17% Similarity=0.158 Sum_probs=72.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEE-eCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~-d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (725)
.||+|||+|.+|..++..|.++|++|..+ .++++..+++...+ ......+..+.+.+
T Consensus 11 l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~----------------------~~~~~~~~~~~~~~ 68 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFI----------------------GAGAILDLEEILRD 68 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC------------------------TT-----TTGGGCC
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccccccccc----------------------cccccccccccccc
Confidence 58999999999999999999999998754 78877766653211 11222222366889
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHh--CCCCeEEEecCCCCChHHHhcccCCCCcEEEEec
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKA--CPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHF 446 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~--~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~ 446 (725)
+|+||++||++ ...++.++|... ..++.+|+=.+.+.+.+.+............+||
T Consensus 69 aDlv~iavpDd--aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 69 ADLVFIAVPDD--AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP 127 (127)
T ss_dssp -SEEEE-S-CC--HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred CCEEEEEechH--HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence 99999999966 567888999887 7789988754445556555555445556667775
No 207
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.90 E-value=3.5e-09 Score=112.83 Aligned_cols=125 Identities=18% Similarity=0.274 Sum_probs=82.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891 308 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (725)
|+||+|||+|.||.++|..++..|+ +|+++|++++.++.....+.... . ......+++.++++++++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~---~---------~~~~~~~i~~~~d~~~~~ 69 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAA---P---------VEGFDTKITGTNDYEDIA 69 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhh---h---------hcCCCcEEEeCCCHHHHC
Confidence 4799999999999999999999876 99999999887543221111110 0 011113566667788899
Q ss_pred CCCEEEEec--------------cCChHHHHHHHHHHHHhCCCCeE-EEecCCCCChHHHhcccCC-CCcEEEE
Q 004891 387 DVDMVIEAV--------------IESVPLKQKIFSELEKACPPHCI-LATNTSTIDLNIVGEKTSS-QDRIIGA 444 (725)
Q Consensus 387 ~aDlVIeav--------------pe~~~~k~~v~~~l~~~~~~~~i-i~s~tS~~~~~~l~~~~~~-~~r~ig~ 444 (725)
+||+||+++ .++..+++++++++.+.+++..+ ++||.+.+....+...... +.+++|+
T Consensus 70 ~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~ 143 (307)
T PRK06223 70 GSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGM 143 (307)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEe
Confidence 999999987 35668899999999998865533 3344443333333332222 3455554
No 208
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.88 E-value=3.7e-09 Score=112.63 Aligned_cols=125 Identities=22% Similarity=0.308 Sum_probs=89.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC-CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (725)
+||+|||+|.||.++|..++..| .+|+++|++++.++...-.+.. .. .......+++.+++++++++
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~------~~------~~~~~~~~i~~~~d~~~l~~ 73 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKH------FS------TLVGSNINILGTNNYEDIKD 73 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhh------hc------cccCCCeEEEeCCCHHHhCC
Confidence 58999999999999999999999 6999999998775421111110 00 00011124555678889999
Q ss_pred CCEEEEec--cCCh------------HHHHHHHHHHHHhCCCC-eEEEecCCCCChHHHhcccCCC-CcEEEEe
Q 004891 388 VDMVIEAV--IESV------------PLKQKIFSELEKACPPH-CILATNTSTIDLNIVGEKTSSQ-DRIIGAH 445 (725)
Q Consensus 388 aDlVIeav--pe~~------------~~k~~v~~~l~~~~~~~-~ii~s~tS~~~~~~l~~~~~~~-~r~ig~h 445 (725)
||+||+++ |++. .+++++.+++.+++++. .|++||.+.+....+......| .+++|++
T Consensus 74 ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 74 SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 99999999 6666 88899999999998766 4556777766666665655544 7888765
No 209
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.88 E-value=3.9e-08 Score=95.65 Aligned_cols=187 Identities=14% Similarity=0.120 Sum_probs=126.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc----cc
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SE 384 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~ 384 (725)
++|+.||+|.||..++.++.+.|++|++||+|+++++.+.. .| ++..+++ +.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~-----------~g-------------a~~a~sl~el~~~ 56 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKD-----------EG-------------ATGAASLDELVAK 56 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHh-----------cC-------------CccccCHHHHHHh
Confidence 47999999999999999999999999999999999887642 12 1112221 34
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCe-------ee
Q 004891 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPL-------LE 457 (725)
Q Consensus 385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~l-------ve 457 (725)
+...-.|-.+||- -++..++++++.+.+.++-+|+....+.--..+...-...+ .|+||++.-..+.. .-
T Consensus 57 L~~pr~vWlMvPa-g~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~--kgi~flD~GTSGG~~G~~~G~~l 133 (300)
T COG1023 57 LSAPRIVWLMVPA-GDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAE--KGIHFLDVGTSGGVWGAERGYCL 133 (300)
T ss_pred cCCCcEEEEEccC-CCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHh--cCCeEEeccCCCCchhhhcCceE
Confidence 5566788899982 23778999999999999999987555433332222111111 27888764433321 11
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCC---eeEEEcC-Ccchhh----hhhhHHH---HHHHHHHHHcC---CCHHHHHHHH-
Q 004891 458 IVRTERTSAQVILDLMTVGKIIKK---VPVVVGN-CTGFAV----NRAFFPY---SQSARLLVSLG---VDVFRIDSAI- 522 (725)
Q Consensus 458 ii~~~~t~~e~~~~~~~l~~~lGk---~~v~v~d-~~Gfi~----nRl~~a~---~~Ea~~l~~~G---v~~~dID~~~- 522 (725)
.|.| ++++++.+.++++.+.. -..++++ ..|-.+ |-|=+.+ ..|.+.++++. ++.++|-+++
T Consensus 134 MiGG---~~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~ 210 (300)
T COG1023 134 MIGG---DEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWN 210 (300)
T ss_pred EecC---cHHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHh
Confidence 3344 69999999999998865 3356654 344333 6553333 34888888874 4888888888
Q ss_pred Hhc
Q 004891 523 RSF 525 (725)
Q Consensus 523 ~~~ 525 (725)
.+.
T Consensus 211 hGS 213 (300)
T COG1023 211 HGS 213 (300)
T ss_pred Ccc
Confidence 443
No 210
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.87 E-value=2.6e-09 Score=92.93 Aligned_cols=91 Identities=21% Similarity=0.223 Sum_probs=69.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHCC---CcEEEE-eCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccc
Q 004891 310 KVAVIGGGLMGSGIATAHILNN---IYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (725)
Q Consensus 310 kIaVIG~G~mG~~iA~~l~~~G---~~V~~~-d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 385 (725)
||+|||+|.||.+|+..|.++| ++|.++ +++++++++..+++ + -.....+..+.+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~----------~-----------~~~~~~~~~~~~ 59 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY----------G-----------VQATADDNEEAA 59 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC----------T-----------TEEESEEHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh----------c-----------cccccCChHHhh
Confidence 7999999999999999999999 899955 99999987754311 0 011111334778
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (725)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (725)
+++|+||.||| +....+++.++ ....++.+++|.+.
T Consensus 60 ~~advvilav~--p~~~~~v~~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 60 QEADVVILAVK--PQQLPEVLSEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp HHTSEEEE-S---GGGHHHHHHHH-HHHHTTSEEEEEST
T ss_pred ccCCEEEEEEC--HHHHHHHHHHH-hhccCCCEEEEeCC
Confidence 89999999998 77788999999 66778888887654
No 211
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.77 E-value=7.9e-08 Score=103.73 Aligned_cols=177 Identities=14% Similarity=0.097 Sum_probs=110.4
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cc
Q 004891 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (725)
Q Consensus 306 ~~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (725)
+.++||+|||+|.||+.+|..|+++| +|++|.++++..+...+.-.+ ......+. .....+..+++. +.
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~--~~~l~~~~-------~l~~~i~~t~d~~~a 74 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRN--SRYLGNDV-------VLSDTLRATTDFAEA 74 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCC--cccCCCCc-------ccCCCeEEECCHHHH
Confidence 34578999999999999999999999 799999999887665321000 00000000 011234556666 56
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh-------HHHhcccCCCCcE-EEEecCCCCC---CC
Q 004891 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-------NIVGEKTSSQDRI-IGAHFFSPAH---VM 453 (725)
Q Consensus 385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-------~~l~~~~~~~~r~-ig~h~~~p~~---~~ 453 (725)
++++|+||.|+| ....+++++++.+.+++++++++.+.++.. +.+.+.+.. .++ +-..|..+.. ..
T Consensus 75 ~~~aDlVilavp--s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~-~~~~~l~GP~~a~ev~~g~ 151 (341)
T PRK12439 75 ANCADVVVMGVP--SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPG-HPAGILAGPNIAREVAEGY 151 (341)
T ss_pred HhcCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCC-CCeEEEECCCHHHHHHcCC
Confidence 789999999999 778889999999999998877777777664 233343322 222 1122211111 11
Q ss_pred CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcchhhhhh
Q 004891 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRA 497 (725)
Q Consensus 454 ~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl 497 (725)
+...++... +++..+.+..++..-+-.+....|..|...--.
T Consensus 152 ~t~~via~~--~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~a 193 (341)
T PRK12439 152 AAAAVLAMP--DQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGA 193 (341)
T ss_pred CeEEEEEeC--CHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHH
Confidence 111122222 577778888888776666666677666544333
No 212
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=98.68 E-value=1.7e-06 Score=92.43 Aligned_cols=177 Identities=8% Similarity=0.073 Sum_probs=104.0
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCC-CCHHHHHHhhcCcccccCccc
Q 004891 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDYSE 384 (725)
Q Consensus 306 ~~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~ 384 (725)
++.+||+|||+|.||+.+|..|+++|++|+++.+++.. ... +.|. +....-+.........++.+.
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~--~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~ 69 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYE--AVR-----------ENGLQVDSVHGDFHLPPVQAYRSAED 69 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHH--HHH-----------hCCeEEEeCCCCeeecCceEEcchhh
Confidence 44568999999999999999999999999999998632 211 1110 000000000011222334455
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHH-HhcccCCCCcEEE-Eec-----CCCCC---CC-
Q 004891 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKTSSQDRIIG-AHF-----FSPAH---VM- 453 (725)
Q Consensus 385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~-l~~~~~~~~r~ig-~h~-----~~p~~---~~- 453 (725)
+..+|+||.|++.. ...+++..+.+.+.++++|++...++...+ +...+. ++++++ +.+ ..|.. ..
T Consensus 70 ~~~~D~vilavK~~--~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~-~~~v~~g~~~~~a~~~~pg~v~~~~~ 146 (313)
T PRK06249 70 MPPCDWVLVGLKTT--ANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILP-AEHLLGGLCFICSNRVGPGVIHHLAY 146 (313)
T ss_pred cCCCCEEEEEecCC--ChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCC-CCcEEEEeeeEeEecCCCeEEEECCC
Confidence 67899999999833 235778888888888888877777776544 444433 334433 222 22210 00
Q ss_pred CeeeEecCCCCC-----HHHHHHHHHHHHHcCCeeEEEcCCcchhhhhhh
Q 004891 454 PLLEIVRTERTS-----AQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAF 498 (725)
Q Consensus 454 ~lveii~~~~t~-----~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~ 498 (725)
..+.+-.....+ .+.++.+..+++..|-...+..|....+..+++
T Consensus 147 g~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~ 196 (313)
T PRK06249 147 GRVNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLV 196 (313)
T ss_pred CcEEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhh
Confidence 011111111112 466777888888888777776776655554443
No 213
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.65 E-value=5.3e-07 Score=94.06 Aligned_cols=190 Identities=14% Similarity=0.109 Sum_probs=129.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc----c
Q 004891 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----S 383 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~----~ 383 (725)
...|||||+|.||+.+|.+++++||.|.+|+|+.++.+...+. .+. ...+..+.++ +
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~----------~~~---------~k~i~~~~sieefV~ 63 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAE----------RAK---------GKNIVPAYSIEEFVA 63 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHh----------Ccc---------CCCccccCcHHHHHH
Confidence 3569999999999999999999999999999999998876532 110 0134444444 3
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHh--cc-cCCCCcEEEEecC-------CCCCCC
Q 004891 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG--EK-TSSQDRIIGAHFF-------SPAHVM 453 (725)
Q Consensus 384 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~--~~-~~~~~r~ig~h~~-------~p~~~~ 453 (725)
.++.---|+.+|--. .....++++|.+++.++-||++...+.-...+. .. ....-.|+|+-.- +.|.
T Consensus 64 ~Le~PRkI~lMVkAG-~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPS-- 140 (473)
T COG0362 64 SLEKPRKILLMVKAG-TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPS-- 140 (473)
T ss_pred HhcCCceEEEEEecC-CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCC--
Confidence 356667788888644 334678899999999999999765543333222 22 2233457766542 2333
Q ss_pred CeeeEecCCCCCHHHHHHHHHHHHHcCCe----e--EEEc-CCcchhh----hhhh---HHHHHHHHHHHHcC--CCHHH
Q 004891 454 PLLEIVRTERTSAQVILDLMTVGKIIKKV----P--VVVG-NCTGFAV----NRAF---FPYSQSARLLVSLG--VDVFR 517 (725)
Q Consensus 454 ~lveii~~~~t~~e~~~~~~~l~~~lGk~----~--v~v~-d~~Gfi~----nRl~---~a~~~Ea~~l~~~G--v~~~d 517 (725)
++||. ++++.+.+.+++..+..+ | .+++ +..|-.+ |-+= +.++.|+..++..+ ++.++
T Consensus 141 ----iMpGG--~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~e 214 (473)
T COG0362 141 ----IMPGG--QKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEE 214 (473)
T ss_pred ----cCCCC--CHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 44554 799999999999887532 2 3343 4556444 5442 35667999999884 59999
Q ss_pred HHHHHHhc
Q 004891 518 IDSAIRSF 525 (725)
Q Consensus 518 ID~~~~~~ 525 (725)
|-.++..+
T Consensus 215 i~~vF~~W 222 (473)
T COG0362 215 IAEVFEEW 222 (473)
T ss_pred HHHHHHHh
Confidence 99998444
No 214
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.64 E-value=1.4e-06 Score=92.84 Aligned_cols=167 Identities=14% Similarity=0.086 Sum_probs=96.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCC-CCHHHHHHhhcCcccccCc-cccc
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDY-SEFK 386 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~-~~~~~~~~~~~~i~~~~~~-~~l~ 386 (725)
+||+|||+|.||..+|..|+++|++|+++++ ++.++...+ .|. +.....+.. -.....++. +..+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~-----------~g~~~~~~~~~~~-~~~~~~~~~~~~~~ 67 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRE-----------RGLVIRSDHGDAV-VPGPVITDPEELTG 67 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHh-----------CCeEEEeCCCeEE-ecceeecCHHHccC
Confidence 3799999999999999999999999999999 766554321 110 000000000 011123344 3348
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh-HHHhcccCCCCcEE-EEecCCCCCCCC-eee------
Q 004891 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRII-GAHFFSPAHVMP-LLE------ 457 (725)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~~~~~r~i-g~h~~~p~~~~~-lve------ 457 (725)
++|+||.|++. .....+++++.+.+.++++|++...++.. +.+...+.. .+++ ++.++......+ .+.
T Consensus 68 ~~d~vilavk~--~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~-~~v~~g~~~~~~~~~~~g~v~~~~~~~ 144 (305)
T PRK12921 68 PFDLVILAVKA--YQLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGR-ERVLGGVVFISAQLNGDGVVVQRADHR 144 (305)
T ss_pred CCCEEEEEecc--cCHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCc-ccEEEEEEEEEEEECCCeEEEEcCCCc
Confidence 89999999983 34567788888888888877766666653 334443332 2333 223221111111 111
Q ss_pred EecC--CCCCHHHHHHHHHHHHHcCCeeEEEcCCcc
Q 004891 458 IVRT--ERTSAQVILDLMTVGKIIKKVPVVVGNCTG 491 (725)
Q Consensus 458 ii~~--~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G 491 (725)
+.-| +....+..+.+..++...|.......|...
T Consensus 145 ~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~ 180 (305)
T PRK12921 145 LTFGEIPGQRSERTRAVRDALAGARLEVVLSENIRQ 180 (305)
T ss_pred EEEcCCCCCcCHHHHHHHHHHHhCCCCceecHHHHH
Confidence 1111 222345666777788887766666566444
No 215
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.61 E-value=6.4e-07 Score=88.02 Aligned_cols=113 Identities=12% Similarity=0.072 Sum_probs=82.5
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (725)
Q Consensus 310 kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (725)
||+|||+ |.||.-++..|.++|+.|++ ++|
T Consensus 2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~~-------------------------------------------------~~~ 32 (197)
T PRK06444 2 MEIIIGKNGRLGRVLCSILDDNGLGVYI-------------------------------------------------KKA 32 (197)
T ss_pred EEEEEecCCcHHHHHHHHHHhCCCEEEE-------------------------------------------------CCC
Confidence 7999999 99999999999999999861 368
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCC-----CeeeEecCCC
Q 004891 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVM-----PLLEIVRTER 463 (725)
Q Consensus 389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~-----~lveii~~~~ 463 (725)
|+||.|+| +....++++++. .+|++.+|+.. .+.+. ..+|+|.||...|... +.+ ++..+.
T Consensus 33 DlVilavP--v~~~~~~i~~~~------~~v~Dv~SvK~--~i~~~---~~~~vg~HPMfGp~~a~~~lf~~~-iv~~~~ 98 (197)
T PRK06444 33 DHAFLSVP--IDAALNYIESYD------NNFVEISSVKW--PFKKY---SGKIVSIHPLFGPMSYNDGVHRTV-IFINDI 98 (197)
T ss_pred CEEEEeCC--HHHHHHHHHHhC------CeEEeccccCH--HHHHh---cCCEEecCCCCCCCcCcccccceE-EEECCC
Confidence 99999999 776677777653 25666555543 22221 3479999997654332 222 334567
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEc
Q 004891 464 TSAQVILDLMTVGKIIKKVPVVVG 487 (725)
Q Consensus 464 t~~e~~~~~~~l~~~lGk~~v~v~ 487 (725)
++++.++.++++++ |..++.+.
T Consensus 99 ~~~~~~~~~~~l~~--G~~~~~~t 120 (197)
T PRK06444 99 SRDNYLNEINEMFR--GYHFVEMT 120 (197)
T ss_pred CCHHHHHHHHHHHc--CCEEEEeC
Confidence 78888999999998 77777763
No 216
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.60 E-value=2.5e-07 Score=99.47 Aligned_cols=105 Identities=18% Similarity=0.141 Sum_probs=74.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCC-CCHHHHHHhhcCcccccCc-ccc-c
Q 004891 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDY-SEF-K 386 (725)
Q Consensus 310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~-~~~~~~~~~~~~i~~~~~~-~~l-~ 386 (725)
||+|||+|.||+.+|..|+++|++|++|+++++.++...+. ..... +.. ......+..+++. +.+ .
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~--------~~~~~~~~~---~~~~~~i~~~~~~~~~~~~ 70 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTK--------RKNLKYLPT---CHLPDNISVKSAIDEVLSD 70 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHc--------CCCcccCCC---CcCCCCeEEeCCHHHHHhC
Confidence 79999999999999999999999999999998876654321 00000 000 0001123445555 344 5
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHH-hCCCCeEEEecCCCCC
Q 004891 387 DVDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTSTID 427 (725)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~-~~~~~~ii~s~tS~~~ 427 (725)
++|+||.||| .....++++++.+ .+++++.+++.++++.
T Consensus 71 ~~Dliiiavk--s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~ 110 (326)
T PRK14620 71 NATCIILAVP--TQQLRTICQQLQDCHLKKNTPILICSKGIE 110 (326)
T ss_pred CCCEEEEEeC--HHHHHHHHHHHHHhcCCCCCEEEEEEcCee
Confidence 8999999998 7777889999988 8888876666666653
No 217
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.59 E-value=5.5e-07 Score=95.80 Aligned_cols=111 Identities=18% Similarity=0.111 Sum_probs=76.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCC-CCHHHHHHhhcCcccccCcccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDYSEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~l~~ 387 (725)
+||+|||+|.||+.+|..|+++|++|++++++++.++...+ .|. ++..+ ....+..+++.+.+++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~-----------~g~~~~~~~---~~~~~~~~~~~~~~~~ 66 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNE-----------NGLRLEDGE---ITVPVLAADDPAELGP 66 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHH-----------cCCcccCCc---eeecccCCCChhHcCC
Confidence 37999999999999999999999999999998877655432 111 00000 0011222344444589
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh-HHHhccc
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKT 435 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~ 435 (725)
+|+||.|++ ......+++++.+.+.++++|++...++.. +.+...+
T Consensus 67 ~d~vila~k--~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~ 113 (304)
T PRK06522 67 QDLVILAVK--AYQLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYI 113 (304)
T ss_pred CCEEEEecc--cccHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhc
Confidence 999999998 334578889999988888777776666653 3344433
No 218
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=98.58 E-value=6.8e-07 Score=85.66 Aligned_cols=145 Identities=22% Similarity=0.261 Sum_probs=102.1
Q ss_pred EEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004891 16 AIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (725)
Q Consensus 16 ~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (725)
.+|.++. .+++.+.+-|.++++.++++ +++.|+|.=. |-|+++.. ...++ +.|.
T Consensus 2 ~vi~i~G----~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in----SPGG~v~~----------------~~~I~-~~i~ 55 (172)
T cd07015 2 YVAQIKG----QITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADA----------------AGNIV-QRIQ 55 (172)
T ss_pred EEEEEee----EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE----CCCCCHHH----------------HHHHH-HHHH
Confidence 3455543 36777888899999998865 5677777411 12233221 12344 6677
Q ss_pred hCCCcEEEEEc---ccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCch--h------hch------HhhhhC--H
Q 004891 96 DCKKPIVAAVE---GLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFG--G------TQR------LPRLVG--L 156 (725)
Q Consensus 96 ~~~kp~Iaav~---G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g--~------~~~------l~r~vG--~ 156 (725)
..++||++.|. |.|..+|.-++++||.++|.+++.++....-.|.-+... . ... +.+.-| .
T Consensus 56 ~~~~pvv~~v~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~ 135 (172)
T cd07015 56 QSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNA 135 (172)
T ss_pred hcCcCEEEEEecCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCH
Confidence 89999999999 999999999999999999999999998777433211000 0 011 122223 4
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceecCc
Q 004891 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186 (725)
Q Consensus 157 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 186 (725)
..+..++.....++|+||++.|++|.|+..
T Consensus 136 ~~a~~~v~~~~~lta~EA~~~G~iD~ia~~ 165 (172)
T cd07015 136 TIAEEFITKDLSLTPEEALKYGVIEVVARD 165 (172)
T ss_pred HHHHHHHHhhcCcCHHHHHHcCCceeeeCC
Confidence 667788888999999999999999999854
No 219
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.52 E-value=2.6e-07 Score=97.84 Aligned_cols=101 Identities=17% Similarity=0.261 Sum_probs=69.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (725)
+||+|||+|.||.++|..++..|+ +|+++|++++.. ++.. ++. .+.+ .......+++++++++.+++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~-~g~a-----~d~-~~~~-----~~~~~~~~i~~t~d~~~~~~ 69 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIP-QGKA-----LDM-YEAS-----PVGGFDTKVTGTNNYADTAN 69 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChh-HHHH-----Hhh-hhhh-----hccCCCcEEEecCCHHHhCC
Confidence 489999999999999999999887 899999986643 3221 000 0111 00111246777788877999
Q ss_pred CCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEec
Q 004891 388 VDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATN 422 (725)
Q Consensus 388 aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ 422 (725)
||+||.+++ .+..+.+++.+++.++. ++++++..
T Consensus 70 aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~ 117 (305)
T TIGR01763 70 SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVV 117 (305)
T ss_pred CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 999999996 24456667777788876 55555433
No 220
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.50 E-value=3.2e-07 Score=98.13 Aligned_cols=107 Identities=18% Similarity=0.127 Sum_probs=77.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHCC--------CcEEEEeC-----ChHHHHHHHHHHHHHHHhhHHcC-CCCHHHHHHhhcC
Q 004891 310 KVAVIGGGLMGSGIATAHILNN--------IYVVLKEV-----NSEYLLKGIKTIEANVRGLVTRG-KLTQDKANNALKM 375 (725)
Q Consensus 310 kIaVIG~G~mG~~iA~~l~~~G--------~~V~~~d~-----~~e~~~~~~~~i~~~l~~~~~~g-~~~~~~~~~~~~~ 375 (725)
||+|||+|.||.++|..++.+| ++|++|.+ +++..+... +..+.. .+.. -.....
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in--------~~~~n~~ylpg---i~Lp~~ 69 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIIN--------TTHENVKYLPG---IKLPAN 69 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHH--------hcCCCccccCC---CcCCCC
Confidence 6999999999999999999999 99999998 333322221 111111 0100 001235
Q ss_pred cccccCc-ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 004891 376 LKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (725)
Q Consensus 376 i~~~~~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 429 (725)
+..++|+ +++++||+||.+|| .+..+.+++++.++++++.++++.+.++...
T Consensus 70 i~at~dl~eal~~ADiIIlAVP--s~~i~~vl~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 70 LVAVPDLVEAAKGADILVFVIP--HQFLEGICKQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred eEEECCHHHHHhcCCEEEEECC--hHHHHHHHHHHHhhcCCCCEEEEEeCCcccC
Confidence 6677787 56799999999999 8888899999999999888888877776544
No 221
>PRK10949 protease 4; Provisional
Probab=98.50 E-value=6.5e-07 Score=102.62 Aligned_cols=162 Identities=19% Similarity=0.226 Sum_probs=104.6
Q ss_pred cCcEEEEEeCCC----C--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchh
Q 004891 12 NDGVAIITLINP----P--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (725)
Q Consensus 12 ~~~v~~i~l~~p----~--~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (725)
.+.|++|+++.. + .+.++. +.+.+.|+++..|++||+|||+=..+ |+.... .+.
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInSp----GGs~~a-------------se~ 384 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNSP----GGSVTA-------------SEV 384 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecCC----CCcHHH-------------HHH
Confidence 567999998643 1 233443 56788899999999999999974422 221110 011
Q ss_pred HHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCccc------------ccCCCCCchhhc-----
Q 004891 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL------------TLGVIPGFGGTQ----- 148 (725)
Q Consensus 86 ~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~------------~~Gl~p~~g~~~----- 148 (725)
+.+.+ ..++...|||||.+.+.|..||+.++++||.++|.+.+..|.-.+ ++|+-+..-.+-
T Consensus 385 i~~~i-~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~ 463 (618)
T PRK10949 385 IRAEL-AAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADV 463 (618)
T ss_pred HHHHH-HHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCc
Confidence 22333 335667899999999999999999999999999998765544222 234332211110
Q ss_pred ------------hH-----------------hhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHH
Q 004891 149 ------------RL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRL 195 (725)
Q Consensus 149 ------------~l-----------------~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~ 195 (725)
.+ .|.+..... +-+..|+.+++++|++.||||++-..++..+.+.+
T Consensus 464 ~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v-~~ia~Grv~tg~~A~~~GLVD~lG~~~~ai~~a~~ 538 (618)
T PRK10949 464 SITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQI-DKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAE 538 (618)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHH-HHHhcCCcccHHHHHHcCCCccCCCHHHHHHHHHH
Confidence 00 122222332 33568999999999999999999765544444333
No 222
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.49 E-value=2.1e-07 Score=100.27 Aligned_cols=111 Identities=21% Similarity=0.134 Sum_probs=78.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC-------CcEEEEeCChHH-HHHHHHHHHHHHHhhHHc-CCCCHHHHHHhhcCcccc
Q 004891 309 RKVAVIGGGLMGSGIATAHILNN-------IYVVLKEVNSEY-LLKGIKTIEANVRGLVTR-GKLTQDKANNALKMLKGV 379 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G-------~~V~~~d~~~e~-~~~~~~~i~~~l~~~~~~-g~~~~~~~~~~~~~i~~~ 379 (725)
+||+|||+|.||+++|..++++| ++|.+|.++++. -+...+.+ .....+ ..+..- .....+..+
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~i----n~~~~N~~ylp~~---~Lp~ni~~t 84 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDII----NTKHENVKYLPGI---KLPDNIVAV 84 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHH----HhcCCCcccCCCC---cCCCceEEe
Confidence 68999999999999999999997 799999999862 11111111 111111 111100 122456777
Q ss_pred cCc-ccccCCCEEEEeccCChHHHHHHHHHHHH--hCCCCeEEEecCCCCCh
Q 004891 380 LDY-SEFKDVDMVIEAVIESVPLKQKIFSELEK--ACPPHCILATNTSTIDL 428 (725)
Q Consensus 380 ~~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~--~~~~~~ii~s~tS~~~~ 428 (725)
+|+ +++++||+||.+|| .+..+++++++.+ .++++++++|.+.++..
T Consensus 85 sdl~eav~~aDiIvlAVP--sq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~ 134 (365)
T PTZ00345 85 SDLKEAVEDADLLIFVIP--HQFLESVLSQIKENNNLKKHARAISLTKGIIV 134 (365)
T ss_pred cCHHHHHhcCCEEEEEcC--hHHHHHHHHHhccccccCCCCEEEEEeCCccc
Confidence 777 57899999999999 8889999999988 77778777776666543
No 223
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.47 E-value=2e-07 Score=96.81 Aligned_cols=171 Identities=16% Similarity=0.134 Sum_probs=133.6
Q ss_pred cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCcccccchhHHHHH
Q 004891 12 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (725)
Q Consensus 12 ~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (725)
-.+++.+.++ |+.|..|.++..+|..-++.+..+..+++..+|+.. ..|++|.|..++.-..... .......+.+++
T Consensus 64 y~~~~~~dmv-ieav~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~f-spa~~m~LlEii 141 (380)
T KOG1683|consen 64 YTGFANADMV-IEAVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFF-SPAHWMQLLEII 141 (380)
T ss_pred ccccccccee-ccchhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhcccccc-CHHHHHHHHHHH
Confidence 3478888887 889999999999999999999999889999999877 6799999999887543321 222334456777
Q ss_pred HHHHhhCCCcEEEEEcccccchh--hHHhhhcCEEEee--CCceEeCcccccCC-CCCchhhchHhhhhCHHHHHHHHHc
Q 004891 91 VNLIEDCKKPIVAAVEGLALGGG--LELAMGCHARIAA--PKTQLGLPELTLGV-IPGFGGTQRLPRLVGLSKAIEMMLL 165 (725)
Q Consensus 91 ~~~l~~~~kp~Iaav~G~a~GgG--~~lalacD~~ia~--~~a~~~~pe~~~Gl-~p~~g~~~~l~r~vG~~~a~~l~l~ 165 (725)
....+++.|+.+++||.+--|+ +-++.+|+|++.. ..-..+..+..+++ .|.+- ...+...+|.+.+-.-+--
T Consensus 142 -~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~-iD~~~t~fGf~~g~~~L~d 219 (380)
T KOG1683|consen 142 -LALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWL-IDSLITKFGFRVGERALAD 219 (380)
T ss_pred -HhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHH-HHHHHHhcCccccHHHHhh
Confidence 5689999999999999998888 8899999999998 44444677777773 34333 3334444565555555667
Q ss_pred CCCCCHHHHHHcCCcceecCc
Q 004891 166 SKSITSEEGWKLGLIDAVVTS 186 (725)
Q Consensus 166 g~~~~a~eA~~~Glv~~vv~~ 186 (725)
+.-++..||++-|+++++.|.
T Consensus 220 ~~gfdv~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 220 GVGFDVAEALAVGLGDEIGPR 240 (380)
T ss_pred ccCccHHHHHhhccchhccch
Confidence 888999999999999999984
No 224
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.45 E-value=1.2e-06 Score=91.20 Aligned_cols=86 Identities=17% Similarity=0.183 Sum_probs=64.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (725)
++|+|||.|.||.++|.+|...|++|+++++.....+.+. ..| .... ++ +.++.
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~-----------~~G-------------~~v~-sl~Eaak~ 71 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAK-----------ADG-------------FEVM-SVSEAVRT 71 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHH-----------HcC-------------CEEC-CHHHHHhc
Confidence 6899999999999999999999999999987643322221 111 1212 33 67899
Q ss_pred CCEEEEeccCChHHHHHHH-HHHHHhCCCCeEEEe
Q 004891 388 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILAT 421 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~-~~l~~~~~~~~ii~s 421 (725)
||+|+.++|. .+. +.++ .++.+.++++++++-
T Consensus 72 ADVV~llLPd-~~t-~~V~~~eil~~MK~GaiL~f 104 (335)
T PRK13403 72 AQVVQMLLPD-EQQ-AHVYKAEVEENLREGQMLLF 104 (335)
T ss_pred CCEEEEeCCC-hHH-HHHHHHHHHhcCCCCCEEEE
Confidence 9999999996 343 4555 578899999998763
No 225
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.44 E-value=5.6e-07 Score=96.28 Aligned_cols=112 Identities=13% Similarity=0.012 Sum_probs=80.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (725)
++|+|||+|.||.++|..+...|++|++||++++..... +....++ +.+++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----------------------------~~~~~~l~ell~~ 198 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----------------------------LTYKDSVKEAIKD 198 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----------------------------hhccCCHHHHHhc
Confidence 479999999999999999999999999999987542110 1112334 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhcccCC-CCcEEEEecCC
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSS-QDRIIGAHFFS 448 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~~-~~r~ig~h~~~ 448 (725)
||+|+.++|...+....+.+++.+.++++++++..+-+..+ ..+.+.+.. +-...++.-|.
T Consensus 199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~ 262 (330)
T PRK12480 199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYE 262 (330)
T ss_pred CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccC
Confidence 99999999988887777778888899999998765555444 344454432 22334444443
No 226
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=98.44 E-value=4e-07 Score=94.68 Aligned_cols=98 Identities=30% Similarity=0.376 Sum_probs=75.9
Q ss_pred EEEEcC-CCCcHHHHHHHHHCC----CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccC-ccc
Q 004891 311 VAVIGG-GLMGSGIATAHILNN----IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD-YSE 384 (725)
Q Consensus 311 IaVIG~-G~mG~~iA~~l~~~G----~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~ 384 (725)
|+|||+ |.||.++|..++..| .+|+++|++++.++.....+++..... ...+++.++| +++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-------------~~~~i~~~~d~~~~ 67 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-------------ADIKVSITDDPYEA 67 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-------------cCcEEEECCchHHH
Confidence 689999 999999999999999 799999999988777655444332221 0135666677 488
Q ss_pred ccCCCEEEE--------------eccCChHHHHHHHHHHHHhCCCCeEEEec
Q 004891 385 FKDVDMVIE--------------AVIESVPLKQKIFSELEKACPPHCILATN 422 (725)
Q Consensus 385 l~~aDlVIe--------------avpe~~~~k~~v~~~l~~~~~~~~ii~s~ 422 (725)
+++||+||+ .+.++..+++++.+++.+++ |+++++.-
T Consensus 68 ~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~ 118 (263)
T cd00650 68 FKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVV 118 (263)
T ss_pred hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 999999999 55678889999999999998 66665533
No 227
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.40 E-value=5.4e-06 Score=81.63 Aligned_cols=147 Identities=16% Similarity=0.129 Sum_probs=96.7
Q ss_pred cHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccc-cCcccccCCCEEEEeccCC
Q 004891 320 GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDYSEFKDVDMVIEAVIES 398 (725)
Q Consensus 320 G~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~l~~aDlVIeavpe~ 398 (725)
|+.+|..++.+||+|++.|.|.+-.+.. .+++..+.| +..+ +|.++++.+.+.|.-.|-.
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~------~w~~vedAG-------------V~vv~dD~eaa~~~Ei~VLFTPFG 93 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDE------HWKRVEDAG-------------VEVVSDDAEAAEHGEIHVLFTPFG 93 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHH------HHHHHHhcC-------------cEEecCchhhhhcceEEEEecccc
Confidence 8899999999999999999987654432 112222222 3334 4458899999999988843
Q ss_pred hHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHh----cccCCCCcEEEEecCCCCCCC----CeeeEecCCCC------
Q 004891 399 VPLKQKIFSELEKACPPHCILATNTSTIDLNIVG----EKTSSQDRIIGAHFFSPAHVM----PLLEIVRTERT------ 464 (725)
Q Consensus 399 ~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~----~~~~~~~r~ig~h~~~p~~~~----~lveii~~~~t------ 464 (725)
. ..-.+.++|.++++.+++|+ ||.+.++-.+- ..+..+.+-+|+..+.|..+- ...-++.|..+
T Consensus 94 k-~T~~Iarei~~hvpEgAVic-nTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~yviagr~t~g~elA 171 (340)
T COG4007 94 K-ATFGIAREILEHVPEGAVIC-NTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGHYVIAGRSTEGKELA 171 (340)
T ss_pred h-hhHHHHHHHHhhCcCCcEec-ccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCCceEEEeccCCCceeec
Confidence 1 34467788999999999886 45554443333 334444444555555443221 11223333333
Q ss_pred CHHHHHHHHHHHHHcCCeeEEEc
Q 004891 465 SAQVILDLMTVGKIIKKVPVVVG 487 (725)
Q Consensus 465 ~~e~~~~~~~l~~~lGk~~v~v~ 487 (725)
++|.++++.++++..||.+.++.
T Consensus 172 TeEQi~r~velaes~Gk~~yv~p 194 (340)
T COG4007 172 TEEQIERCVELAESTGKEVYVLP 194 (340)
T ss_pred cHHHHHHHHHHHHhcCCceEecC
Confidence 78999999999999999998873
No 228
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=98.39 E-value=9.6e-06 Score=83.34 Aligned_cols=164 Identities=16% Similarity=0.099 Sum_probs=116.4
Q ss_pred CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccCCCEEEEeccCChHHHHHHHHHHH
Q 004891 332 IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELE 410 (725)
Q Consensus 332 ~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~ 410 (725)
++|++++|++++++...+. ++ +..+.+. +.+.+||+||.||+ ++...+++.++.
T Consensus 10 ~~I~v~~R~~e~~~~l~~~----------------------~g-~~~~~~~~e~~~~aDiIiLaVk--P~~i~~vl~~l~ 64 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKE----------------------LG-IVASSDAQEAVKEADVVFLAVK--PQDLEEVLSELK 64 (245)
T ss_pred CeEEEEcCCHHHHHHHHHH----------------------cC-cEEeCChHHHHhhCCEEEEEeC--HHHHHHHHHHHh
Confidence 5899999999886654321 11 2223333 45688999999998 777788889888
Q ss_pred HhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEe-cCCCCCHHHHHHHHHHHHHcCCeeEEEcCC
Q 004891 411 KACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTERTSAQVILDLMTVGKIIKKVPVVVGNC 489 (725)
Q Consensus 411 ~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii-~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~ 489 (725)
+.+.++.+|+|...++++..+...+....+++.+.|+.|......+..+ .++.++++..+.+..++..+|+...+ .|.
T Consensus 65 ~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v-~E~ 143 (245)
T TIGR00112 65 SEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVEL-PEA 143 (245)
T ss_pred hhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEE-CHH
Confidence 7777788999999999999998888655578999998888777665555 56778899999999999999976644 331
Q ss_pred --cchhh-----hhhhHHHHHHHH--HHHHcCCCHHHHHHHH
Q 004891 490 --TGFAV-----NRAFFPYSQSAR--LLVSLGVDVFRIDSAI 522 (725)
Q Consensus 490 --~Gfi~-----nRl~~a~~~Ea~--~l~~~Gv~~~dID~~~ 522 (725)
..+.+ .-+++ ++.|++ ..+..|+++++..+++
T Consensus 144 ~~~~~talsgsgPA~~~-~~~~al~~~~v~~Gl~~~~A~~lv 184 (245)
T TIGR00112 144 LMDAVTALSGSGPAYVF-LFIEALADAGVKQGLPRELALELA 184 (245)
T ss_pred HcchHHhhccCcHHHHH-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 11111 11222 222332 4456699998888876
No 229
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=98.39 E-value=4.1e-06 Score=80.19 Aligned_cols=131 Identities=18% Similarity=0.209 Sum_probs=92.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEE--cCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEE
Q 004891 28 LAIPIVAGLKDKFEEATSRDDVKAIVLT--GNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (725)
Q Consensus 28 l~~~~~~~l~~~l~~~~~~~~v~~vVl~--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav 105 (725)
++..+.+++.+.|..++.++.++.|+|. +.|+ ++. ....++ +.|..+++|+++.+
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG------~v~----------------~~~~i~-~~i~~~~~~v~~~~ 65 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLYINSPGG------DVF----------------AGMAIY-DTIKFIKADVVTII 65 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCC------cHH----------------HHHHHH-HHHHhcCCCceEEE
Confidence 5678899999999999988777777763 4432 221 122445 66888999999999
Q ss_pred cccccchhhHHhhhcC--EEEeeCCceEeCcccccCCCCCchhh-----------------chHhhh--hCHHHHHHHHH
Q 004891 106 EGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGT-----------------QRLPRL--VGLSKAIEMML 164 (725)
Q Consensus 106 ~G~a~GgG~~lalacD--~~ia~~~a~~~~pe~~~Gl~p~~g~~-----------------~~l~r~--vG~~~a~~l~l 164 (725)
.|.|.++|.-++++|| .|++.++++|.+....-+.. + ... ..+.+. .......+++-
T Consensus 66 ~g~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~-g-~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~ 143 (162)
T cd07013 66 DGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTL-G-DATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLE 143 (162)
T ss_pred EeehhhHHHHHHHcCCCCcEEEecCEEEEEccCccccc-C-CHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHc
Confidence 9999999999999999 68888888887644322211 1 111 011122 23455667777
Q ss_pred cCCCCCHHHHHHcCCccee
Q 004891 165 LSKSITSEEGWKLGLIDAV 183 (725)
Q Consensus 165 ~g~~~~a~eA~~~Glv~~v 183 (725)
.+..++|+||++.||||++
T Consensus 144 ~~~~~sa~eA~~~GliD~i 162 (162)
T cd07013 144 RDTWLSAREAVEYGFADTI 162 (162)
T ss_pred CCccccHHHHHHcCCCCcC
Confidence 7888899999999999985
No 230
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=98.32 E-value=1.2e-06 Score=86.75 Aligned_cols=104 Identities=19% Similarity=0.269 Sum_probs=72.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC---hHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc--
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN---SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-- 382 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~---~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-- 382 (725)
.||+|||+|.||+.+|..|+++|+ +++++|.+ ++.+.+-. . ...+.|....+.....+.++....+.
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~--~-----~~~~iG~~Ka~~~~~~l~~inp~~~i~~ 94 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQ--Y-----KASQVGEPKTEALKENISEINPYTEIEA 94 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccccccc--C-----ChhhCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 579999999999999999999999 69999998 65554411 0 00112222233333333333332222
Q ss_pred -----------ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEE
Q 004891 383 -----------SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (725)
Q Consensus 383 -----------~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~ 420 (725)
+.++++|+||+| .++...|..++.++....+...++.
T Consensus 95 ~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~ 142 (200)
T TIGR02354 95 YDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIA 142 (200)
T ss_pred eeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 246789999999 6899999999999988877766665
No 231
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.29 E-value=3e-06 Score=90.36 Aligned_cols=83 Identities=13% Similarity=0.084 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHh---CHHHHHHHHHHHHHHhCC-CCCCC
Q 004891 623 EIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAV---GANYVYTSLKKWSQLYGN-FFKPS 698 (725)
Q Consensus 623 ~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~---G~~~~~~~~~~~~~~~~~-~~~p~ 698 (725)
.+.||++.++++||+.++++|++ |+++||.++..|+|+|+..-|||++.|.. |++.+......+....++ .+.|+
T Consensus 188 ~i~nrl~~a~~~EA~~l~~~g~~-~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~~ 266 (308)
T PRK06129 188 FVLNRLQGALLREAFRLVADGVA-SVDDIDAVIRDGLGLRWSFMGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQPV 266 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCccCcCHHHHHhccccccHHHHHHHHHHHHHhhccccCCCc
Confidence 58999999999999999999999 99999999999999985446999999987 999999999999888876 88899
Q ss_pred HHHHHHHH
Q 004891 699 RFLEERAT 706 (725)
Q Consensus 699 ~~l~~~~~ 706 (725)
|+++++++
T Consensus 267 ~~~~~~~~ 274 (308)
T PRK06129 267 PWDGELVA 274 (308)
T ss_pred hhhHHHHH
Confidence 99998884
No 232
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.26 E-value=1.3e-05 Score=79.44 Aligned_cols=135 Identities=20% Similarity=0.203 Sum_probs=91.0
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEE
Q 004891 26 NALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (725)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia 103 (725)
..++.++...+...|..++.++..+-|.| .+.| +|+. ....++ +.|...+.|+++
T Consensus 38 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpG------G~v~----------------~g~~I~-d~i~~~~~~v~t 94 (200)
T PRK00277 38 GEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG------GSVT----------------AGLAIY-DTMQFIKPDVST 94 (200)
T ss_pred CEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCC------CcHH----------------HHHHHH-HHHHhcCCCEEE
Confidence 45788899999999998886654443443 3333 2221 122445 667788899999
Q ss_pred EEcccccchhhHHhhhcC--EEEeeCCceEeCcccccCCCCCchhh------------------chHhhhhC--HHHHHH
Q 004891 104 AVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGT------------------QRLPRLVG--LSKAIE 161 (725)
Q Consensus 104 av~G~a~GgG~~lalacD--~~ia~~~a~~~~pe~~~Gl~p~~g~~------------------~~l~r~vG--~~~a~~ 161 (725)
.+.|.|.+.|..++++++ .|++.+.++|.+....-|. +|-. ..+...-| .....+
T Consensus 95 ~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~---~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~ 171 (200)
T PRK00277 95 ICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGF---QGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEK 171 (200)
T ss_pred EEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 999999999999999743 5777777776664433221 1111 11222223 356667
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCc
Q 004891 162 MMLLSKSITSEEGWKLGLIDAVVTS 186 (725)
Q Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~ 186 (725)
++-.+..++|+||++.||||+|+..
T Consensus 172 ~~~~~~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 172 DTDRDNFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred HhhCCccccHHHHHHcCCccEEeec
Confidence 7778899999999999999999854
No 233
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.23 E-value=4.7e-06 Score=89.47 Aligned_cols=102 Identities=15% Similarity=0.108 Sum_probs=72.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (725)
++|+|||+|.||..+|..+...|++|++||++...... . ..+ .. ..++ +.+++
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~-~-----------~~~-------------~~-~~~l~ell~~ 204 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAE-K-----------ELG-------------AE-YRPLEELLRE 204 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhH-H-----------HcC-------------CE-ecCHHHHHhh
Confidence 68999999999999999999999999999998643211 0 001 11 1233 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhcccC
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS 436 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~ 436 (725)
||+|+.++|...+.+.-+-.+..+.++++++++..+.+-.+ ..+.+.+.
T Consensus 205 aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~ 255 (333)
T PRK13243 205 SDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALK 255 (333)
T ss_pred CCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHH
Confidence 99999999977776666657788889999988744443333 34444443
No 234
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.23 E-value=3.3e-06 Score=78.88 Aligned_cols=101 Identities=24% Similarity=0.298 Sum_probs=68.7
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccc
Q 004891 309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (725)
Q Consensus 309 ~kIaVIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 385 (725)
+||+|||+ |..|+++|..|...++ +++++|++++.++.-...+++....... .......+++++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~-------------~~~i~~~~~~~~ 67 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPS-------------PVRITSGDYEAL 67 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTE-------------EEEEEESSGGGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccc-------------cccccccccccc
Confidence 48999999 9999999999999876 8999999988766544333332211100 112223567899
Q ss_pred cCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891 386 KDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT 423 (725)
Q Consensus 386 ~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (725)
++||+||.+.-. +..+.+++..++.++. |+++++..|
T Consensus 68 ~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvt 118 (141)
T PF00056_consen 68 KDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVT 118 (141)
T ss_dssp TTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-S
T ss_pred ccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeC
Confidence 999999988732 3345566666788887 555554443
No 235
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.20 E-value=3.2e-06 Score=78.85 Aligned_cols=93 Identities=17% Similarity=0.220 Sum_probs=63.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChH-HHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e-~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (725)
++|+|||.|..|.+.|.+|..+|++|++-.+..+ ..+++. +.| ....+-.++++.
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~-----------~~G-------------f~v~~~~eAv~~ 60 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAK-----------ADG-------------FEVMSVAEAVKK 60 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHH-----------HTT--------------ECCEHHHHHHC
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHH-----------HCC-------------CeeccHHHHHhh
Confidence 6899999999999999999999999999988766 444432 222 333333377899
Q ss_pred CCEEEEeccCChHHHHHHH-HHHHHhCCCCeEEEecCCCCCh
Q 004891 388 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTIDL 428 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~-~~l~~~~~~~~ii~s~tS~~~~ 428 (725)
+|+|+..+| -+.-.+++ ++|.+.++++.++.- +.++.+
T Consensus 61 aDvV~~L~P--D~~q~~vy~~~I~p~l~~G~~L~f-ahGfni 99 (165)
T PF07991_consen 61 ADVVMLLLP--DEVQPEVYEEEIAPNLKPGATLVF-AHGFNI 99 (165)
T ss_dssp -SEEEE-S---HHHHHHHHHHHHHHHS-TT-EEEE-SSSHHH
T ss_pred CCEEEEeCC--hHHHHHHHHHHHHhhCCCCCEEEe-CCcchh
Confidence 999999999 44455777 789999999998864 344433
No 236
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=98.15 E-value=0.00019 Score=75.99 Aligned_cols=166 Identities=14% Similarity=0.092 Sum_probs=100.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (725)
+||.|+|+|.||+-++..|+++|.+|+++-|++. +++..+ .|..-.............+.+.+.+..+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~-----------~GL~i~~~~~~~~~~~~~~~~~~~~~~~ 68 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKK-----------KGLRIEDEGGNFTTPVVAATDAEALGPA 68 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHh-----------CCeEEecCCCccccccccccChhhcCCC
Confidence 4899999999999999999999988888888875 554432 1211000000000112223334667799
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHH-HhcccCCCCcEEEEecCCCCCCCCeeeEec-------
Q 004891 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKTSSQDRIIGAHFFSPAHVMPLLEIVR------- 460 (725)
Q Consensus 389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~-l~~~~~~~~r~ig~h~~~p~~~~~lveii~------- 460 (725)
|+||.++- .-...++++.+.+.++++++|++.-.++...+ +.+......-+.|+-+.......+..-...
T Consensus 69 Dlviv~vK--a~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~i 146 (307)
T COG1893 69 DLVIVTVK--AYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVI 146 (307)
T ss_pred CEEEEEec--cccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEE
Confidence 99999985 55667889999999999998887777776655 333333332244444433322222211111
Q ss_pred CCC--CCHHHHHHHHHHHHHcCCeeEEEcC
Q 004891 461 TER--TSAQVILDLMTVGKIIKKVPVVVGN 488 (725)
Q Consensus 461 ~~~--t~~e~~~~~~~l~~~lGk~~v~v~d 488 (725)
|+. -.++.++.+.++++..|-...+..+
T Consensus 147 g~~~~~~~~~~~~i~~~~~~a~~~~~~~~d 176 (307)
T COG1893 147 GELRGGRDELVKALAELFKEAGLEVELHPD 176 (307)
T ss_pred ccCCCCchHHHHHHHHHHHhCCCCeEEcHH
Confidence 111 1336777777777666655555443
No 237
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.15 E-value=1.1e-05 Score=85.22 Aligned_cols=134 Identities=11% Similarity=0.065 Sum_probs=85.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (725)
++|+|||.|.||..+|..+...|++|++||++... .+. .....++ +.+++
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~-----------------~~~------------~~~~~~l~ell~~ 173 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN-----------------DGI------------SSIYMEPEDIMKK 173 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc-----------------cCc------------ccccCCHHHHHhh
Confidence 78999999999999999888789999999997421 000 0001233 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhcccCC-CCcEEEEecCC--CC---CCCCeeeEe
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFFS--PA---HVMPLLEIV 459 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~-~~r~ig~h~~~--p~---~~~~lveii 459 (725)
||+|+.++|...+.+.-+-++....++++++++..+.+ +....+.+.+.. .....++..|. |. +..+-+-++
T Consensus 174 aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~~~~nviiT 253 (303)
T PRK06436 174 SDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITETNPDNVILS 253 (303)
T ss_pred CCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccCCCCCEEEC
Confidence 99999999987776655556677789999988743333 223355555542 23344554442 21 233556666
Q ss_pred cC-C-CCCHHHHHH
Q 004891 460 RT-E-RTSAQVILD 471 (725)
Q Consensus 460 ~~-~-~t~~e~~~~ 471 (725)
|+ . .++++..+.
T Consensus 254 PHi~g~~t~e~~~~ 267 (303)
T PRK06436 254 PHVAGGMSGEIMQP 267 (303)
T ss_pred CccccccCHHHHHH
Confidence 76 2 245554443
No 238
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.15 E-value=3.9e-06 Score=89.25 Aligned_cols=99 Identities=24% Similarity=0.290 Sum_probs=67.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC--CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891 309 RKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G--~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (725)
+||+|||+|.+|+++|..|+..| .+|+++|++++.++.....+.+...... .. ..+ ...+++.++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~-~~-----------~~i-~~~~~~~l~ 67 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLP-SP-----------VKI-KAGDYSDCK 67 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccC-CC-----------eEE-EcCCHHHhC
Confidence 48999999999999999999999 5899999999887655443332211000 00 012 234557789
Q ss_pred CCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEe
Q 004891 387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILAT 421 (725)
Q Consensus 387 ~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s 421 (725)
+||+||.+... +..+.+++..++.++.+ +++++.
T Consensus 68 ~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~-~~~viv 115 (306)
T cd05291 68 DADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGF-DGIFLV 115 (306)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEE
Confidence 99999999853 33455666677888765 555543
No 239
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=98.15 E-value=1.4e-05 Score=85.07 Aligned_cols=177 Identities=10% Similarity=-0.028 Sum_probs=100.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (725)
+||+|||+|.||+-+|..|+++|++|++++|.++.++...+. +.+. ....+... . -... ..+.+....+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~--~Gl~-i~~~g~~~------~-~~~~-~~~~~~~~~~ 71 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQA--GGLT-LVEQGQAS------L-YAIP-AETADAAEPI 71 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhc--CCeE-EeeCCcce------e-eccC-CCCccccccc
Confidence 479999999999999999999999999999988776654320 0000 00011000 0 0011 1112335678
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHH-HhcccCCCCcEEEEecCCCCCCCCe-e------eEec
Q 004891 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKTSSQDRIIGAHFFSPAHVMPL-L------EIVR 460 (725)
Q Consensus 389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~-l~~~~~~~~r~ig~h~~~p~~~~~l-v------eii~ 460 (725)
|+||.|+- ..-..+.++.+.+.+.++++|++.-.++...+ +...+....-+.|..++......|. + .+.-
T Consensus 72 D~viv~vK--~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~~~~ 149 (305)
T PRK05708 72 HRLLLACK--AYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGFTWL 149 (305)
T ss_pred CEEEEECC--HHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEEEEE
Confidence 99999985 33345778889999999998887777776543 4444432222333333211111111 0 1112
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeeEEEcCCcchhhhhhhH
Q 004891 461 TERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFF 499 (725)
Q Consensus 461 ~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~ 499 (725)
|.. +.+..+.+.+++...|-...+..|..+.+.+.+++
T Consensus 150 G~~-~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~ 187 (305)
T PRK05708 150 GDP-RNPTAPAWLDDLREAGIPHEWTVDILTRLWRKLAL 187 (305)
T ss_pred cCC-CCcchHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Confidence 221 22334556666666665555555666655555543
No 240
>PLN03139 formate dehydrogenase; Provisional
Probab=98.13 E-value=1.7e-05 Score=86.01 Aligned_cols=115 Identities=14% Similarity=0.074 Sum_probs=77.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (725)
++|+|||.|.||..+|+.+...|++|++||++....+... +.| +....++ +.+++
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~l~ell~~ 255 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEK-----------ETG-------------AKFEEDLDAMLPK 255 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHh-----------hcC-------------ceecCCHHHHHhh
Confidence 6899999999999999999999999999998753211110 001 1222344 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhcccCC-CCcEEEEecC
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSS-QDRIIGAHFF 447 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~~-~~r~ig~h~~ 447 (725)
||+|+.++|...+.+.-+-+++...++++++++..+-+-.+ ..+.+.+.. .-...++..|
T Consensus 256 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~ 318 (386)
T PLN03139 256 CDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVW 318 (386)
T ss_pred CCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCC
Confidence 99999999977776665556788889999988744333333 344444432 2233445543
No 241
>PRK07574 formate dehydrogenase; Provisional
Probab=98.12 E-value=2.1e-05 Score=85.46 Aligned_cols=115 Identities=9% Similarity=-0.017 Sum_probs=76.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (725)
++|+|||.|.||..+|..+...|++|+.||++....+... .. .+....++ +.+++
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~-----------~~-------------g~~~~~~l~ell~~ 248 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQ-----------EL-------------GLTYHVSFDSLVSV 248 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHh-----------hc-------------CceecCCHHHHhhc
Confidence 5899999999999999999999999999999863211100 00 11222334 56799
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhcccC-CCCcEEEEecC
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFF 447 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~-~~~r~ig~h~~ 447 (725)
||+|+.++|...+...-+=++....++++++++..+-+-.+ ..+.+.+. ..-.-.++..|
T Consensus 249 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~ 311 (385)
T PRK07574 249 CDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVW 311 (385)
T ss_pred CCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecC
Confidence 99999999987776555446678889999988744433333 34444443 22233444433
No 242
>PRK15076 alpha-galactosidase; Provisional
Probab=98.11 E-value=1e-05 Score=89.66 Aligned_cols=77 Identities=21% Similarity=0.264 Sum_probs=55.4
Q ss_pred cceEEEEcCCCCcHHHHH--HHH----HCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccC
Q 004891 308 VRKVAVIGGGLMGSGIAT--AHI----LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD 381 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~--~l~----~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 381 (725)
|+||+|||+|.||.+.+. .++ ..|.+|+++|+++++++.+...+++.+... + ...+++.++|
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~---~---------~~~~i~~ttD 68 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESL---G---------ASAKITATTD 68 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhc---C---------CCeEEEEECC
Confidence 369999999999966555 443 246799999999999887655444443332 1 0135777788
Q ss_pred c-ccccCCCEEEEecc
Q 004891 382 Y-SEFKDVDMVIEAVI 396 (725)
Q Consensus 382 ~-~~l~~aDlVIeavp 396 (725)
. +++++||+||+++-
T Consensus 69 ~~eal~dADfVv~ti~ 84 (431)
T PRK15076 69 RREALQGADYVINAIQ 84 (431)
T ss_pred HHHHhCCCCEEeEeee
Confidence 4 88999999999983
No 243
>PRK11778 putative inner membrane peptidase; Provisional
Probab=98.09 E-value=3.1e-05 Score=81.64 Aligned_cols=160 Identities=17% Similarity=0.254 Sum_probs=98.7
Q ss_pred cCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHH
Q 004891 12 NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (725)
Q Consensus 12 ~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (725)
.+.|++|.++.+ ..+. ...+.+++.+.+..+..+ .+|||+-.. .|+.+.... .....+
T Consensus 89 ~~~v~VI~~~G~I~~~~-~~~l~e~i~a~l~~A~~~---~aVvLridS----pGG~v~~s~-------------~a~~~l 147 (330)
T PRK11778 89 KPRLFVLDFKGDIDASE-VESLREEITAILAVAKPG---DEVLLRLES----PGGVVHGYG-------------LAASQL 147 (330)
T ss_pred CCeEEEEEEEEEECCCc-chhhHHHHHHHHHhccCC---CeEEEEEeC----CCCchhHHH-------------HHHHHH
Confidence 357999999876 2221 123556666666665533 467775432 122221110 011123
Q ss_pred HHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhh-----------------------
Q 004891 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGT----------------------- 147 (725)
Q Consensus 91 ~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~----------------------- 147 (725)
.++....||+++.+.+.|..||+.++++||.++|.+.+.+|...+-... |.....
T Consensus 148 -~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~-~~~~~lLeKlGI~~evi~aG~yK~a~~pf 225 (330)
T PRK11778 148 -QRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQI-PNFHRLLKKHDIDVELHTAGEYKRTLTLF 225 (330)
T ss_pred -HHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeec-cCHHHHHHHCCCceEEEEecCccCCCCCC
Confidence 3477789999999999999999999999999999998877655443221 111110
Q ss_pred --------chHhh-----------hhCHH---HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHH
Q 004891 148 --------QRLPR-----------LVGLS---KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSR 194 (725)
Q Consensus 148 --------~~l~r-----------~vG~~---~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~ 194 (725)
..+.. .|-.. ...+-+.+|+.+++++|++.||||++-..+++...+.
T Consensus 226 ~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~~ 294 (330)
T PRK11778 226 GENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELM 294 (330)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHHH
Confidence 00100 11111 1234466899999999999999999998777655444
No 244
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.07 E-value=7.6e-06 Score=86.83 Aligned_cols=98 Identities=24% Similarity=0.281 Sum_probs=66.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (725)
.||+|||+|.+|+++|..++..|. +++++|++++.++.....+.+.... . ....+..++++++++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~------~-------~~~~v~~~~dy~~~~ 70 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAF------L-------KNPKIEADKDYSVTA 70 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhcc------C-------CCCEEEECCCHHHhC
Confidence 599999999999999999999887 7999999987655433333221100 0 001355557888899
Q ss_pred CCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEE
Q 004891 387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA 420 (725)
Q Consensus 387 ~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~ 420 (725)
+||+||.+.-. +..+.+++.+++.++.+ +.+++
T Consensus 71 ~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p-~~~vi 117 (312)
T cd05293 71 NSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSP-NAILL 117 (312)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEE
Confidence 99999997621 23345556667888754 45444
No 245
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.07 E-value=2.5e-05 Score=82.90 Aligned_cols=113 Identities=12% Similarity=0.067 Sum_probs=77.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (725)
++|+|||.|.||..+|..+...|++|++||++.+..... .......++ +.+++
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~--------------------------~~~~~~~~l~e~l~~ 190 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGV--------------------------QSFAGREELSAFLSQ 190 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCc--------------------------eeecccccHHHHHhc
Confidence 689999999999999999999999999999876431100 000011233 56799
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhcccCC-CCcEEEEecC
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFF 447 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~-~~r~ig~h~~ 447 (725)
||+|+.++|...+.+.-+-++....++++++++...=+ +.-..+.+.+.. .-+..++..|
T Consensus 191 aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf 253 (312)
T PRK15469 191 TRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVF 253 (312)
T ss_pred CCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCC
Confidence 99999999988887766667788889999988643323 333455555542 2233455544
No 246
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.07 E-value=5.3e-05 Score=75.46 Aligned_cols=136 Identities=20% Similarity=0.212 Sum_probs=98.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEE
Q 004891 26 NALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (725)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia 103 (725)
..++..+..++...|..++.++..+.|.| .+.| +++. ....++ +.|..++.||++
T Consensus 42 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG------G~v~----------------~g~~I~-d~i~~~~~~v~t 98 (207)
T PRK12553 42 GQVDDASANDVMAQLLVLESIDPDRDITLYINSPG------GSVT----------------AGDAIY-DTIQFIRPDVQT 98 (207)
T ss_pred ceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCC------CcHH----------------HHHHHH-HHHHhcCCCcEE
Confidence 45889999999999999987654444444 3433 3321 122445 668888999999
Q ss_pred EEcccccchhhHHhhhcC--EEEeeCCceEeCccccc-CCCCCchhh------------------chHhhhh--CHHHHH
Q 004891 104 AVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTL-GVIPGFGGT------------------QRLPRLV--GLSKAI 160 (725)
Q Consensus 104 av~G~a~GgG~~lalacD--~~ia~~~a~~~~pe~~~-Gl~p~~g~~------------------~~l~r~v--G~~~a~ 160 (725)
.+.|.|.+.|.-++++|| .|++.++++|.+..... |. ..|-. ..+...- ......
T Consensus 99 ~~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~--~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~ 176 (207)
T PRK12553 99 VCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGG--IRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIR 176 (207)
T ss_pred EEEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCC--CccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 999999999999999999 69999999998876543 21 11211 1122222 345666
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCc
Q 004891 161 EMMLLSKSITSEEGWKLGLIDAVVTS 186 (725)
Q Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~ 186 (725)
+++-.+..++|+||++.||||+|++.
T Consensus 177 ~~~~~~~~lta~EA~e~GliD~I~~~ 202 (207)
T PRK12553 177 KDTDRDKWLTAEEAKDYGLVDQIITS 202 (207)
T ss_pred HHHhcCccccHHHHHHcCCccEEcCc
Confidence 77778999999999999999999853
No 247
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.07 E-value=2.2e-05 Score=75.93 Aligned_cols=132 Identities=21% Similarity=0.257 Sum_probs=96.2
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEE
Q 004891 28 LAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (725)
Q Consensus 28 l~~~~~~~l~~~l~~~~~~~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav 105 (725)
++.....++...+..++.++..+.|+| .+.|+ |+. ....++ +.|...+.|+++.+
T Consensus 18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG------~v~----------------~~~~i~-~~l~~~~~~v~t~~ 74 (171)
T cd07017 18 IDDEVANLIIAQLLYLESEDPKKPIYLYINSPGG------SVT----------------AGLAIY-DTMQYIKPPVSTIC 74 (171)
T ss_pred EcHHHHHHHHHHHHHHHccCCCCceEEEEECCCC------CHH----------------HHHHHH-HHHHhcCCCEEEEE
Confidence 678889999999999998766565555 34333 221 122344 56778899999999
Q ss_pred cccccchhhHHhhhcC--EEEeeCCceEeCcccccCCCCCchhh----------------chHhhh--hCHHHHHHHHHc
Q 004891 106 EGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGT----------------QRLPRL--VGLSKAIEMMLL 165 (725)
Q Consensus 106 ~G~a~GgG~~lalacD--~~ia~~~a~~~~pe~~~Gl~p~~g~~----------------~~l~r~--vG~~~a~~l~l~ 165 (725)
.|.|.++|.-++++|| .|++.++++|.+.+...+.. +...- ..+... .......+++-.
T Consensus 75 ~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~-g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~ 153 (171)
T cd07017 75 LGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAG-GQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDR 153 (171)
T ss_pred EeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhC
Confidence 9999999999999999 89999999999887665542 21100 011121 233466677778
Q ss_pred CCCCCHHHHHHcCCccee
Q 004891 166 SKSITSEEGWKLGLIDAV 183 (725)
Q Consensus 166 g~~~~a~eA~~~Glv~~v 183 (725)
+..++|+||+++|+||+|
T Consensus 154 ~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 154 DRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred CccccHHHHHHcCCCccC
Confidence 999999999999999986
No 248
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.04 E-value=6.1e-06 Score=78.44 Aligned_cols=104 Identities=13% Similarity=0.100 Sum_probs=66.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC-CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (725)
++|+|||+|.||.+++..+.+.| .+|+++|++++..+...+.+.. .. + ... ..+. +.++
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~-------~~-~----------~~~-~~~~~~~~~ 80 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE-------LG-I----------AIA-YLDLEELLA 80 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh-------cc-c----------cee-ecchhhccc
Confidence 68999999999999999999996 7899999999887664332110 00 0 011 1222 4478
Q ss_pred CCCEEEEeccCChH-HHHHHHHHHHHhCCCCeEEEecCCCCChHHHhc
Q 004891 387 DVDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNTSTIDLNIVGE 433 (725)
Q Consensus 387 ~aDlVIeavpe~~~-~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~ 433 (725)
++|+||.|+|.+.. .....+. ...+++++++++.++....+.+.+
T Consensus 81 ~~Dvvi~~~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~ 126 (155)
T cd01065 81 EADLIINTTPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLK 126 (155)
T ss_pred cCCEEEeCcCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHH
Confidence 99999999997653 1111121 123578888876555433334433
No 249
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.04 E-value=7.6e-06 Score=87.85 Aligned_cols=92 Identities=17% Similarity=0.092 Sum_probs=65.4
Q ss_pred ceEEEEcCCCCcHHHHHHHH-HCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891 309 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~-~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (725)
++|+|||+|.||.++|..++ ..|++|++||++....... .+...+++ +.++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~---------------------------~~~~~~~l~ell~ 199 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAAT---------------------------YVDYKDTIEEAVE 199 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHHh---------------------------hccccCCHHHHHH
Confidence 58999999999999999995 4688999999986432100 01122344 5678
Q ss_pred CCCEEEEeccCChHHHHHHH-HHHHHhCCCCeEEEecCCCCCh
Q 004891 387 DVDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTIDL 428 (725)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~-~~l~~~~~~~~ii~s~tS~~~~ 428 (725)
+||+|+.++|....... ++ .++.+.++++++++..+.+..+
T Consensus 200 ~aDvIvl~lP~t~~t~~-li~~~~l~~mk~gailIN~sRG~~v 241 (332)
T PRK08605 200 GADIVTLHMPATKYNHY-LFNADLFKHFKKGAVFVNCARGSLV 241 (332)
T ss_pred hCCEEEEeCCCCcchhh-hcCHHHHhcCCCCcEEEECCCCccc
Confidence 99999999997666543 43 4567778999988755554443
No 250
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.02 E-value=0.0001 Score=75.69 Aligned_cols=152 Identities=13% Similarity=0.021 Sum_probs=103.7
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-c-cc
Q 004891 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S-EF 385 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~-~l 385 (725)
..+|||||.|.||.-+|..+.++|+.|...||++ -+.+.+.+ +.-. -+++ + +-
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~y----------------------g~~~-ft~lhdlce 106 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKY----------------------GSAK-FTLLHDLCE 106 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHh----------------------cccc-cccHHHHHh
Confidence 3689999999999999999999999999999986 22222111 1111 1222 1 23
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHHh-CCCCeEEEecCCCCC--hHHHhcccCCCCcEEEEecCCCCC-CC------Ce
Q 004891 386 KDVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAH-VM------PL 455 (725)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~-~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~p~~-~~------~l 455 (725)
+..|+|+.|+. ..-...+++..-.. ++.++|+...+|... .+...+.++..-.++..|++..|. .. |+
T Consensus 107 rhpDvvLlcts--ilsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpf 184 (480)
T KOG2380|consen 107 RHPDVVLLCTS--ILSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPF 184 (480)
T ss_pred cCCCEEEEEeh--hhhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCce
Confidence 67899999985 55555666554444 667899988777543 334445566666789999965553 11 44
Q ss_pred eeEe---cCCCCCHHHHHHHHHHHHHcCCeeEEE
Q 004891 456 LEIV---RTERTSAQVILDLMTVGKIIKKVPVVV 486 (725)
Q Consensus 456 veii---~~~~t~~e~~~~~~~l~~~lGk~~v~v 486 (725)
|-+- ......+|..+.+.+++...|...|.+
T Consensus 185 VydkvRig~~~~r~ercE~fleIf~cegckmVem 218 (480)
T KOG2380|consen 185 VYDKVRIGYAASRPERCEFFLEIFACEGCKMVEM 218 (480)
T ss_pred EEEEeeccccccchHHHHHHHHHHHhcCCeEEEE
Confidence 3321 123446999999999999999998887
No 251
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.01 E-value=3.7e-05 Score=81.77 Aligned_cols=163 Identities=22% Similarity=0.294 Sum_probs=102.2
Q ss_pred cEEEEEeCCC-C--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHH
Q 004891 14 GVAIITLINP-P--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (725)
Q Consensus 14 ~v~~i~l~~p-~--~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (725)
.|++|.++.+ . .+.+..--.+.+.+.|+.+..|+++++|||.=. |-|+.... .....+.+
T Consensus 60 ~Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~in----SPGG~v~a-------------s~~i~~~l 122 (317)
T COG0616 60 VIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRIN----SPGGSVVA-------------SELIARAL 122 (317)
T ss_pred EEEEEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEE----CcCCchhH-------------HHHHHHHH
Confidence 5888888655 1 122223346677788888999999999999522 11222110 01122333
Q ss_pred HHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhh-----------------------
Q 004891 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGT----------------------- 147 (725)
Q Consensus 91 ~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~----------------------- 147 (725)
+++..-. ||++.|.+.|..||..++++||.+||++.|..|--.+-.+. |.....
T Consensus 123 -~~l~~~~-PV~v~v~~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~~-~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~ 199 (317)
T COG0616 123 -KRLRAKK-PVVVSVGGYAASGGYYIALAADKIVADPSSITGSIGVISGA-PNFEELLEKLGVEKEVITAGEYKDILSPF 199 (317)
T ss_pred -HHHhhcC-CEEEEECCeecchhhhhhccCCEEEecCCceeeeceeEEec-CCHHHHHHhcCCceeeeeccccccccCcc
Confidence 3344444 99999999999999999999999999999987755444332 211100
Q ss_pred --------chH-----------hhhh-----CHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHH
Q 004891 148 --------QRL-----------PRLV-----GLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLW 196 (725)
Q Consensus 148 --------~~l-----------~r~v-----G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~ 196 (725)
..+ ...| .......-+.+|+.+++++|++.||||++-..++....+.+.
T Consensus 200 ~~~t~e~~~~~q~~~~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~~~~ 272 (317)
T COG0616 200 RPLTEEEREILQKEIDETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAEL 272 (317)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHHHHHHHHh
Confidence 000 0001 112223457799999999999999999998666554444443
No 252
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.99 E-value=9.5e-06 Score=86.26 Aligned_cols=97 Identities=24% Similarity=0.325 Sum_probs=65.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC--CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891 309 RKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G--~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (725)
+||+|||+|.+|.++|..++..| .+|+++|++++.++.....+.+. .... . .....++++++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~-------~~~~-~------~~~i~~~d~~~l~ 66 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHG-------TPFV-K------PVRIYAGDYADCK 66 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcc-------cccc-C------CeEEeeCCHHHhC
Confidence 37999999999999999999999 58999999988765322111111 0000 0 0112245678899
Q ss_pred CCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEE
Q 004891 387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCIL 419 (725)
Q Consensus 387 ~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii 419 (725)
+||+||.+++. +..+.+++.+++.++.+.+.++
T Consensus 67 ~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giii 113 (308)
T cd05292 67 GADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILL 113 (308)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 99999999964 3445566677788877554444
No 253
>PLN02602 lactate dehydrogenase
Probab=97.97 E-value=1.4e-05 Score=85.91 Aligned_cols=98 Identities=28% Similarity=0.346 Sum_probs=66.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (725)
.||+|||+|.+|+++|..++..|. +++++|++++.++...-.+.+..... + . ..+..++++++++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~---~---------~-~~i~~~~dy~~~~ 104 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFL---P---------R-TKILASTDYAVTA 104 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcC---C---------C-CEEEeCCCHHHhC
Confidence 599999999999999999998887 79999999877654433333221100 0 0 1233345778899
Q ss_pred CCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEE
Q 004891 387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA 420 (725)
Q Consensus 387 ~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~ 420 (725)
+||+||.+.-. +..+.+++...+.++++. ++++
T Consensus 105 daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~-~ivi 151 (350)
T PLN02602 105 GSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPD-TILL 151 (350)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEE
Confidence 99999998621 233455666677777654 4444
No 254
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.90 E-value=2.3e-05 Score=83.40 Aligned_cols=98 Identities=23% Similarity=0.274 Sum_probs=67.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (725)
+||+|||+|.+|+++|..++..|. +++++|++++.++.....+.+..... .. -.+. ++++++++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~--~~-----------~~i~-~~~~~~~~ 72 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFT--SP-----------TKIY-AGDYSDCK 72 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcccc--CC-----------eEEE-eCCHHHhC
Confidence 599999999999999999999998 89999999887665444333322100 00 1232 45678899
Q ss_pred CCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEe
Q 004891 387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILAT 421 (725)
Q Consensus 387 ~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s 421 (725)
+||+||.+.-. +..+.+++..++.++.+ +++++.
T Consensus 73 ~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~-~~~viv 120 (315)
T PRK00066 73 DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGF-DGIFLV 120 (315)
T ss_pred CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEE
Confidence 99999998631 33445566666776654 555543
No 255
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.90 E-value=9.7e-05 Score=72.83 Aligned_cols=140 Identities=20% Similarity=0.222 Sum_probs=94.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEE
Q 004891 27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (725)
Q Consensus 27 al~~~~~~~l~~~l~~~~~~~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa 104 (725)
.++..+...+.+.|..++..+..+.|.| .+.| +++. ....++ +.|...+.||++.
T Consensus 31 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG------G~v~----------------ag~aI~-d~i~~~~~~V~t~ 87 (197)
T PRK14512 31 EINKDLSELFQEKILLLEALDSKKPIFVYIDSEG------GDID----------------AGFAIF-NMIRFVKPKVFTI 87 (197)
T ss_pred EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC------CCHH----------------HHHHHH-HHHHhCCCCEEEE
Confidence 4778889999999988876333343444 3433 3321 122445 6688899999999
Q ss_pred EcccccchhhHHhhhcCE--EEeeCCceEeCcccccCCCCCchh-h---------------chHhhhhC--HHHHHHHHH
Q 004891 105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGG-T---------------QRLPRLVG--LSKAIEMML 164 (725)
Q Consensus 105 v~G~a~GgG~~lalacD~--~ia~~~a~~~~pe~~~Gl~p~~g~-~---------------~~l~r~vG--~~~a~~l~l 164 (725)
+.|.|.+.|.-++++||- |++.++++|.+-...-++. |... . ..+...-| .....+++-
T Consensus 88 v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~-G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~ 166 (197)
T PRK14512 88 GVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFK-GVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTD 166 (197)
T ss_pred EEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccc-cCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhh
Confidence 999999999999999985 9999999886654432221 1111 0 00111222 355566677
Q ss_pred cCCCCCHHHHHHcCCcceecCc-chHH
Q 004891 165 LSKSITSEEGWKLGLIDAVVTS-EELL 190 (725)
Q Consensus 165 ~g~~~~a~eA~~~Glv~~vv~~-~~l~ 190 (725)
....++|+||++.||||+|++. +++.
T Consensus 167 ~d~~lta~EA~~yGliD~I~~~~~~l~ 193 (197)
T PRK14512 167 RDFWLDSSSAVKYGLVFEVVETRLELE 193 (197)
T ss_pred cCcccCHHHHHHcCCccEeecCcHHhH
Confidence 7789999999999999999954 4443
No 256
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.90 E-value=4e-05 Score=72.51 Aligned_cols=108 Identities=19% Similarity=0.155 Sum_probs=71.3
Q ss_pred EEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCC-CCHHHHHHhhcCccccc---Cc-ccc
Q 004891 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVL---DY-SEF 385 (725)
Q Consensus 311 IaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~-~~~~~~~~~~~~i~~~~---~~-~~l 385 (725)
|+|+|+|.||.-+|..|+++|++|+++++.+ .++...+ .|. ++... ....+.... +. +..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~-----------~g~~~~~~~---~~~~~~~~~~~~~~~~~~ 65 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKE-----------QGLTITGPD---GDETVQPPIVISAPSADA 65 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHH-----------HCEEEEETT---EEEEEEEEEEESSHGHHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhh-----------eeEEEEecc---cceecccccccCcchhcc
Confidence 7899999999999999999999999999998 6555321 110 00000 000011111 11 245
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHH-hccc
Q 004891 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV-GEKT 435 (725)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l-~~~~ 435 (725)
..+|+||.|+. .....++++.+.+++.+++.|++...++...+. .+..
T Consensus 66 ~~~D~viv~vK--a~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~ 114 (151)
T PF02558_consen 66 GPYDLVIVAVK--AYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYF 114 (151)
T ss_dssp STESEEEE-SS--GGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHS
T ss_pred CCCcEEEEEec--ccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHc
Confidence 78999999996 444557888899999999877777777775544 4444
No 257
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=97.89 E-value=2.1e-05 Score=83.29 Aligned_cols=98 Identities=23% Similarity=0.323 Sum_probs=68.8
Q ss_pred EEEEcCCCCcHHHHHHHHHCC--CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891 311 VAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (725)
Q Consensus 311 IaVIG~G~mG~~iA~~l~~~G--~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (725)
|+|||+|.+|+++|..++..| .+++++|++++.++.....+.+..... . ...+..+++++++++|
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~---~----------~~~i~~~~~~~~l~~a 67 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFL---A----------TGTIVRGGDYADAADA 67 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcccc---C----------CCeEEECCCHHHhCCC
Confidence 689999999999999999998 589999999988765544443322110 0 0133334567899999
Q ss_pred CEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEec
Q 004891 389 DMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATN 422 (725)
Q Consensus 389 DlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ 422 (725)
|+||.++.. +..+.+++..++.+++ |+++++..
T Consensus 68 DiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~ 114 (300)
T cd00300 68 DIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVV 114 (300)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEc
Confidence 999999842 3345666667788887 55655433
No 258
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=97.89 E-value=5.1e-05 Score=86.54 Aligned_cols=130 Identities=15% Similarity=0.063 Sum_probs=81.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (725)
++|+|||+|.||..+|..+...|++|++||+.... +... +.+ +...+++ +.+++
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~~~l~ell~~ 193 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAE-----------QLG-------------VELVDDLDELLAR 193 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------CEEcCCHHHHHhh
Confidence 68999999999999999999999999999985321 1110 011 1222334 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC--ChHHHhcccCC-CCcEEEEecC--CCC-----CCCCeee
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSS-QDRIIGAHFF--SPA-----HVMPLLE 457 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~~-~~r~ig~h~~--~p~-----~~~~lve 457 (725)
||+|+.++|...+.+.-+=.+..+.++++++++..+-+- ....+.+.+.. .-...++..| .|+ +..+-|.
T Consensus 194 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi 273 (525)
T TIGR01327 194 ADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVI 273 (525)
T ss_pred CCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeE
Confidence 999999999776654444356667889999887444333 33355555442 2233445433 232 2334455
Q ss_pred EecCCC
Q 004891 458 IVRTER 463 (725)
Q Consensus 458 ii~~~~ 463 (725)
++|+-.
T Consensus 274 ~TPHia 279 (525)
T TIGR01327 274 ATPHLG 279 (525)
T ss_pred ECCCcc
Confidence 666443
No 259
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.88 E-value=7.2e-05 Score=74.50 Aligned_cols=151 Identities=15% Similarity=0.123 Sum_probs=114.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC----cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccc
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~----~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (725)
.+|++||+|.|..+++..+.++|. +++.+-.+......- ... ++.-.+.++.+.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~----------~~~------------~g~~~~~~n~~~ 58 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLM----------FEA------------LGVKTVFTNLEV 58 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhh----------hhc------------CCceeeechHHH
Confidence 379999999999999999999986 444444422221110 011 122233444677
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEe-cCCC
Q 004891 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTER 463 (725)
Q Consensus 385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii-~~~~ 463 (725)
++.+|++++++- +.+...++.++...+..+.||+|..-+..++.+...+..+.|++...++.|..+.-...++ .+..
T Consensus 59 ~~~s~v~~~svK--p~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~ 136 (267)
T KOG3124|consen 59 LQASDVVFLSVK--PQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCH 136 (267)
T ss_pred HhhccceeEeec--chhHHHHhhcCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCC
Confidence 889999999995 7777778877776667788999999999999998888877899999999999888777744 5777
Q ss_pred CCHHHHHHHHHHHHHcCCee
Q 004891 464 TSAQVILDLMTVGKIIKKVP 483 (725)
Q Consensus 464 t~~e~~~~~~~l~~~lGk~~ 483 (725)
...+..+.+.+++...|...
T Consensus 137 ~~~~D~~l~~~ll~~vG~~~ 156 (267)
T KOG3124|consen 137 ATNEDLELVEELLSAVGLCE 156 (267)
T ss_pred cchhhHHHHHHHHHhcCcce
Confidence 78888899999999999643
No 260
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=97.84 E-value=0.00033 Score=71.59 Aligned_cols=138 Identities=16% Similarity=0.116 Sum_probs=89.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEE
Q 004891 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (725)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav 105 (725)
..++++-++...+.++.+... .+-+|-|.-.++++. |.+-. .......+.+.+ ..+.....|+|++|
T Consensus 77 G~~~~~g~rKa~R~~~lA~~~-~lPvV~lvDtpGa~~-g~~aE----------~~G~~~~ia~~~-~~~s~~~VP~IsVI 143 (256)
T PRK12319 77 GQPHPEGYRKALRLMKQAEKF-GRPVVTFINTAGAYP-GVGAE----------ERGQGEAIARNL-MEMSDLKVPIIAII 143 (256)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CHhHH----------hccHHHHHHHHH-HHHhCCCCCEEEEE
Confidence 467788888888888888754 556666643333332 32211 011122333444 45778899999999
Q ss_pred cccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 004891 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (725)
Q Consensus 106 ~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 185 (725)
-|.|.|||......||+++|.+++.++.- .|.++....+...--...+.+.+ .+++.++.+.|+||+|+|
T Consensus 144 ~G~~~gGgA~a~~~~D~v~m~~~a~~~v~------~pe~~a~il~~~~~~a~~aa~~~----~~~a~~l~~~g~iD~ii~ 213 (256)
T PRK12319 144 IGEGGSGGALALAVADQVWMLENTMYAVL------SPEGFASILWKDGSRATEAAELM----KITAGELLEMGVVDKVIP 213 (256)
T ss_pred eCCcCcHHHHHhhcCCEEEEecCceEEEc------CHHHHHHHHhcCcccHHHHHHHc----CCCHHHHHHCCCCcEecC
Confidence 99999998888889999999999887642 13333322222211112222332 779999999999999996
Q ss_pred c
Q 004891 186 S 186 (725)
Q Consensus 186 ~ 186 (725)
+
T Consensus 214 e 214 (256)
T PRK12319 214 E 214 (256)
T ss_pred C
Confidence 4
No 261
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=97.83 E-value=0.00031 Score=69.33 Aligned_cols=138 Identities=18% Similarity=0.205 Sum_probs=97.4
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEE
Q 004891 26 NALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (725)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia 103 (725)
..++.++..++...|-.++.++..+-|.+ .+.|+ |+. ....++ +.|...+.||..
T Consensus 37 ~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG------~v~----------------~g~aIy-d~m~~~~~~V~T 93 (200)
T CHL00028 37 QEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGG------SVI----------------SGLAIY-DTMQFVKPDVHT 93 (200)
T ss_pred CeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCc------chh----------------hHHHHH-HHHHhcCCCEEE
Confidence 35899999999999999886544344433 44442 221 122455 668889999999
Q ss_pred EEcccccchhhHHhhhcC--EEEeeCCceEeCcccccCCCCCchhh----------------chHhhhhC--HHHHHHHH
Q 004891 104 AVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGT----------------QRLPRLVG--LSKAIEMM 163 (725)
Q Consensus 104 av~G~a~GgG~~lalacD--~~ia~~~a~~~~pe~~~Gl~p~~g~~----------------~~l~r~vG--~~~a~~l~ 163 (725)
.+-|.|.+.|.-|++++| .|++.++++|.+-....|..-+...- ..+...-| .....+++
T Consensus 94 v~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~ 173 (200)
T CHL00028 94 ICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDM 173 (200)
T ss_pred EEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh
Confidence 999999999999999999 69999999998877655522111110 11122222 34555777
Q ss_pred HcCCCCCHHHHHHcCCcceecCc
Q 004891 164 LLSKSITSEEGWKLGLIDAVVTS 186 (725)
Q Consensus 164 l~g~~~~a~eA~~~Glv~~vv~~ 186 (725)
-....++|+||++.||||+|+.+
T Consensus 174 ~r~~~lta~EA~eyGliD~I~~~ 196 (200)
T CHL00028 174 ERDVFMSATEAKAYGIVDLVAVN 196 (200)
T ss_pred hcCccCCHHHHHHcCCCcEEeec
Confidence 78888999999999999999854
No 262
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=97.83 E-value=0.00097 Score=72.52 Aligned_cols=186 Identities=12% Similarity=0.085 Sum_probs=109.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEE------EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVV------LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~------~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (725)
++|+|||.|.+|...|..+...|++|+ ++|.+.+.-+++. +.| ....+..
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~-----------~dG-------------F~v~~~~ 92 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKAT-----------ENG-------------FKVGTYE 92 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHH-----------hcC-------------CccCCHH
Confidence 689999999999999999999999998 4444444433322 122 2222222
Q ss_pred ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCC----------CC
Q 004891 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA----------HV 452 (725)
Q Consensus 383 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~----------~~ 452 (725)
++++.||+|+..+|+. ....++.++.+.+++++++.-+ -++.+.......+..-.++-+-|-.|- ..
T Consensus 93 Ea~~~ADvVviLlPDt--~q~~v~~~i~p~LK~Ga~L~fs-HGFni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~G 169 (487)
T PRK05225 93 ELIPQADLVINLTPDK--QHSDVVRAVQPLMKQGAALGYS-HGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFG 169 (487)
T ss_pred HHHHhCCEEEEcCChH--HHHHHHHHHHhhCCCCCEEEec-CCceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCCC
Confidence 6789999999999966 3777789999999999988632 333333211111111223333332222 11
Q ss_pred CCeeeEec-CCCCCHHHHHHHHHHHHHcCCee--EE-E--c-C-Ccchhhhhh-hHHHH-----HHHHHHHHcCCCHHHH
Q 004891 453 MPLLEIVR-TERTSAQVILDLMTVGKIIKKVP--VV-V--G-N-CTGFAVNRA-FFPYS-----QSARLLVSLGVDVFRI 518 (725)
Q Consensus 453 ~~lveii~-~~~t~~e~~~~~~~l~~~lGk~~--v~-v--~-d-~~Gfi~nRl-~~a~~-----~Ea~~l~~~Gv~~~dI 518 (725)
.|.+-.|- -...+..+.+.+..+...+|..- |+ . . + ..-+...|. +...+ ...-.++++|.+|++-
T Consensus 170 vp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A 249 (487)
T PRK05225 170 VPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYA 249 (487)
T ss_pred ceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHHHHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHH
Confidence 12222222 13456778899999999999762 22 1 1 1 111222332 22222 1234678889998886
Q ss_pred HHH
Q 004891 519 DSA 521 (725)
Q Consensus 519 D~~ 521 (725)
-..
T Consensus 250 ~k~ 252 (487)
T PRK05225 250 EKL 252 (487)
T ss_pred HHH
Confidence 543
No 263
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=97.81 E-value=9.1e-05 Score=78.78 Aligned_cols=112 Identities=17% Similarity=0.122 Sum_probs=75.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeC-ChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEV-NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~-~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (725)
++|||||+|.+|+.+|..+..-|++|.+||+ .+...+.. .......++ +.++
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~--------------------------~~~~~~~~Ld~lL~ 196 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV--------------------------DGVVGVDSLDELLA 196 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc--------------------------ccceecccHHHHHh
Confidence 6899999999999999999999999999999 43321110 011223344 5679
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-C--CChHHHhcccCCC-CcEEEEecC
Q 004891 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTSSQ-DRIIGAHFF 447 (725)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~~~-~r~ig~h~~ 447 (725)
.||+|+..+|...+.+.-+=.+....++++++++ |++ + +....+.+.+... -+-.++..|
T Consensus 197 ~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailI-N~aRG~vVde~aL~~AL~~G~i~gA~lDVf 260 (324)
T COG0111 197 EADILTLHLPLTPETRGLINAEELAKMKPGAILI-NAARGGVVDEDALLAALDSGKIAGAALDVF 260 (324)
T ss_pred hCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEE-ECCCcceecHHHHHHHHHcCCcceEEecCC
Confidence 9999999999777754444456677789999775 565 2 3333555555432 233444444
No 264
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.81 E-value=1.7e-05 Score=77.36 Aligned_cols=114 Identities=14% Similarity=0.095 Sum_probs=72.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (725)
++|+|||.|.+|..+|..+..-|.+|++||++........ .. ... ..++ +.++.
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~-----------~~-------------~~~-~~~l~ell~~ 91 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD-----------EF-------------GVE-YVSLDELLAQ 91 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH-----------HT-------------TEE-ESSHHHHHHH
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcc-----------cc-------------cce-eeehhhhcch
Confidence 6899999999999999999999999999999987644111 00 111 2344 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhcccCCC-CcEEEEecC
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQ-DRIIGAHFF 447 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~~-~r~ig~h~~ 447 (725)
||+|+.++|-..+...-+=++....++++++++..+-+ +.-..+.+.+... -.-.++..|
T Consensus 92 aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~ 154 (178)
T PF02826_consen 92 ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVF 154 (178)
T ss_dssp -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-
T ss_pred hhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECC
Confidence 99999999966554333335667778999988754433 3333455555432 233444444
No 265
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=97.80 E-value=5.8e-05 Score=73.93 Aligned_cols=134 Identities=18% Similarity=0.265 Sum_probs=91.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCce--EEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEE
Q 004891 28 LAIPIVAGLKDKFEEATSRDDVK--AIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (725)
Q Consensus 28 l~~~~~~~l~~~l~~~~~~~~v~--~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav 105 (725)
++.++...+.+.|..++.++..+ .|.|.+. |+|+.. ...++ +.|..++.|+++.+
T Consensus 25 I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSp------GG~v~~----------------g~~i~-~~i~~~~~~v~t~~ 81 (182)
T PF00574_consen 25 IDEESANRLISQLLYLENEDKNKPINIYINSP------GGDVDA----------------GLAIY-DAIRSSKAPVTTVV 81 (182)
T ss_dssp BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEEC------EBCHHH----------------HHHHH-HHHHHSSSEEEEEE
T ss_pred cCHHHHHHHHHHHHHHhccCCCceEEEEEcCC------CCccHH----------------HHHHH-HHHHhcCCCeEEEE
Confidence 88899999999888775333222 2333443 344321 23455 67889999999999
Q ss_pred cccccchhhHHhhhcCE--EEeeCCceEeCcccccCCCCCchhh----------------chHhhh--hCHHHHHHHHHc
Q 004891 106 EGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGT----------------QRLPRL--VGLSKAIEMMLL 165 (725)
Q Consensus 106 ~G~a~GgG~~lalacD~--~ia~~~a~~~~pe~~~Gl~p~~g~~----------------~~l~r~--vG~~~a~~l~l~ 165 (725)
.|.|.+.|.-++++||. |++.+.+.|.+-+...+... .... ..+... .......+++-.
T Consensus 82 ~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g-~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~ 160 (182)
T PF00574_consen 82 LGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGG-NASELREQAKELEKLNERIANIYAERTGLSKEEIEELMDR 160 (182)
T ss_dssp EEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEE-EHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCSS
T ss_pred eCccccceehhhhcCCcCceeeeecCEEEeecceeeccc-ccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhC
Confidence 99999999999999999 89999999999888655422 1111 111111 233444566666
Q ss_pred CCCCCHHHHHHcCCcceecC
Q 004891 166 SKSITSEEGWKLGLIDAVVT 185 (725)
Q Consensus 166 g~~~~a~eA~~~Glv~~vv~ 185 (725)
...++|+||++.|+||+|+.
T Consensus 161 ~~~l~a~EA~~~GiiD~I~~ 180 (182)
T PF00574_consen 161 DTWLSAEEALEYGIIDEIIE 180 (182)
T ss_dssp TEEEEHHHHHHHTSSSEEES
T ss_pred CccccHHHHHHcCCCCEecc
Confidence 77889999999999999974
No 266
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=97.78 E-value=4.4e-05 Score=79.77 Aligned_cols=102 Identities=26% Similarity=0.347 Sum_probs=66.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (725)
+||+|||+|.+|+++|..|...++ +++++|++++.++--...+.+..... .....+..+.++++++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~------------~~~~~i~~~~~y~~~~ 68 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPL------------GSDVKITGDGDYEDLK 68 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhc------------cCceEEecCCChhhhc
Confidence 489999999999999999987754 89999999665443221121111000 0001233334589999
Q ss_pred CCCEEEEec--c------------CChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891 387 DVDMVIEAV--I------------ESVPLKQKIFSELEKACPPHCILATNT 423 (725)
Q Consensus 387 ~aDlVIeav--p------------e~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (725)
++|+|+.+. | .+..+.+++.+++.+.++ +.++...|
T Consensus 69 ~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlVvt 118 (313)
T COG0039 69 GADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLVVT 118 (313)
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEEec
Confidence 999999987 3 245566777777888876 55544333
No 267
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.78 E-value=9.1e-05 Score=84.53 Aligned_cols=129 Identities=14% Similarity=0.088 Sum_probs=82.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (725)
++|+|||+|.||..+|..+...|++|++||++... +... ..+ +... ++ +.+++
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~-~l~ell~~ 194 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAA-----------QLG-------------VELV-SLDELLAR 194 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------CEEE-cHHHHHhh
Confidence 68999999999999999999999999999986422 1110 011 1122 33 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhcccCC-CCcEEEEecC--CCC-----CCCCeee
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSS-QDRIIGAHFF--SPA-----HVMPLLE 457 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~-~~r~ig~h~~--~p~-----~~~~lve 457 (725)
||+|+.++|...+.+.-+-.+..+.++++++++..+-+-. -..+.+.+.. .-.-.++..| .|+ +..+-|.
T Consensus 195 aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi 274 (526)
T PRK13581 195 ADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVV 274 (526)
T ss_pred CCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCee
Confidence 9999999997766555444667788999998874443333 3355555432 2233445443 232 2334455
Q ss_pred EecCCC
Q 004891 458 IVRTER 463 (725)
Q Consensus 458 ii~~~~ 463 (725)
++|+-.
T Consensus 275 lTPHia 280 (526)
T PRK13581 275 VTPHLG 280 (526)
T ss_pred EcCccc
Confidence 666443
No 268
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=97.76 E-value=0.00035 Score=68.71 Aligned_cols=136 Identities=18% Similarity=0.168 Sum_probs=92.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEE
Q 004891 27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (725)
Q Consensus 27 al~~~~~~~l~~~l~~~~~~~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa 104 (725)
.++..+..++...|..++.++..+-|+| .+. |+|+. ....++ +.|..++.|+...
T Consensus 34 ~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSp------GG~v~----------------~g~~I~-d~l~~~~~~v~t~ 90 (191)
T TIGR00493 34 EVNDSVANLIVAQLLFLEAEDPEKDIYLYINSP------GGSIT----------------AGLAIY-DTMQFIKPDVSTI 90 (191)
T ss_pred EEChHHHHHHHHHHHHhhccCCCCCEEEEEECC------CCCHH----------------HHHHHH-HHHHhcCCCEEEE
Confidence 3677788888888888887654444444 333 33321 122445 5677777888888
Q ss_pred EcccccchhhHHhhhcC--EEEeeCCceEeCcccccCCCCCchhh---------------chHhhhhC--HHHHHHHHHc
Q 004891 105 VEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGT---------------QRLPRLVG--LSKAIEMMLL 165 (725)
Q Consensus 105 v~G~a~GgG~~lalacD--~~ia~~~a~~~~pe~~~Gl~p~~g~~---------------~~l~r~vG--~~~a~~l~l~ 165 (725)
+-|.|.+.|.-+++++| .|++.++++|.+....-|......-. ..+.+.-| .....+++-.
T Consensus 91 ~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~ 170 (191)
T TIGR00493 91 CIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTER 170 (191)
T ss_pred EEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhC
Confidence 89999999998888665 69999999998866543321111101 11222323 3566677788
Q ss_pred CCCCCHHHHHHcCCcceecC
Q 004891 166 SKSITSEEGWKLGLIDAVVT 185 (725)
Q Consensus 166 g~~~~a~eA~~~Glv~~vv~ 185 (725)
+..++|+||++.||||+|+.
T Consensus 171 ~~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 171 DFFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred CccCcHHHHHHcCCccEEec
Confidence 89999999999999999974
No 269
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.76 E-value=5.8e-05 Score=80.24 Aligned_cols=108 Identities=23% Similarity=0.217 Sum_probs=69.4
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC--cEEEEeCCh--HHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcc
Q 004891 309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS 383 (725)
Q Consensus 309 ~kIaVIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~--e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 383 (725)
+||+|||+ |..|..+|..++..|+ +|+++|+++ +.++.....+. +.+...+. ..++..+++++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~---d~~~~~~~---------~~~i~~~~d~~ 68 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIY---DALAAAGI---------DAEIKISSDLS 68 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhh---hchhccCC---------CcEEEECCCHH
Confidence 48999998 9999999999999987 499999964 33332221111 11111110 01355556678
Q ss_pred cccCCCEEEEeccC------C-h-------HHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 004891 384 EFKDVDMVIEAVIE------S-V-------PLKQKIFSELEKACPPHCILATNTSTIDLN 429 (725)
Q Consensus 384 ~l~~aDlVIeavpe------~-~-------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 429 (725)
++++||+||.|+.- + . .+.+++...|.+.++ +++++..++..++.
T Consensus 69 ~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~~ 127 (309)
T cd05294 69 DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDVM 127 (309)
T ss_pred HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHHH
Confidence 89999999999841 1 1 445566667777764 66666666665543
No 270
>PLN02928 oxidoreductase family protein
Probab=97.74 E-value=0.00013 Score=78.80 Aligned_cols=126 Identities=12% Similarity=0.086 Sum_probs=75.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (725)
++|+|||+|.||..+|..+...|++|++||++........ +. ...... ...........++ +.+++
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~------~~--~~~~~~-----~~~~~~~~~~~~L~ell~~ 226 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDG------LL--IPNGDV-----DDLVDEKGGHEDIYEFAGE 226 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhh------hc--cccccc-----cccccccCcccCHHHHHhh
Confidence 6899999999999999999999999999999743211100 00 000000 0000000012234 56799
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhcccCC-CCcEEEEecC
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFF 447 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~-~~r~ig~h~~ 447 (725)
||+|+.++|-..+...-+=.+....++++++|+..+-+ +.-..+.+.+.. .-...++..|
T Consensus 227 aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~ 289 (347)
T PLN02928 227 ADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVA 289 (347)
T ss_pred CCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccC
Confidence 99999999977665444445677788999988744433 333455555542 2233455544
No 271
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.72 E-value=8.5e-05 Score=78.65 Aligned_cols=100 Identities=17% Similarity=0.268 Sum_probs=64.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891 310 KVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (725)
Q Consensus 310 kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (725)
||+|||+|.+|+++|..++..|. +++++|++++.++.....+.+......... -.+. +.+++++++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~-----------~~i~-~~~y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTN-----------TKIR-AGDYDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCC-----------EEEE-ECCHHHhCC
Confidence 79999999999999999999887 799999998775543322222110000000 0232 457799999
Q ss_pred CCEEEEeccC------C----------hHHHHHHHHHHHHhCCCCeEEEec
Q 004891 388 VDMVIEAVIE------S----------VPLKQKIFSELEKACPPHCILATN 422 (725)
Q Consensus 388 aDlVIeavpe------~----------~~~k~~v~~~l~~~~~~~~ii~s~ 422 (725)
||+||.+.-. + ..+.+++..++.++. |+++++..
T Consensus 69 aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~-p~~i~ivv 118 (307)
T cd05290 69 ADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVT-KEAVIILI 118 (307)
T ss_pred CCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEe
Confidence 9999998731 1 123444445566666 55655443
No 272
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=97.71 E-value=0.0011 Score=70.91 Aligned_cols=138 Identities=16% Similarity=0.099 Sum_probs=88.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEE
Q 004891 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (725)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav 105 (725)
.+++++-++...+.++.++.. .+-+|-|--.++++ .|.+-.+. .....+.+.+ ..+..+..|+|++|
T Consensus 200 G~~~peGyRKAlR~mklAekf-~lPIVtLVDTpGA~-pG~~AEe~----------Gqa~aIAr~l-~ams~l~VPiISVV 266 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKF-GFPILTFVDTPGAY-AGIKAEEL----------GQGEAIAFNL-REMFGLRVPIIATV 266 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcC-CCHHHHHH----------hHHHHHHHHH-HHHhcCCCCEEEEE
Confidence 467899999999988888764 45555554333333 33322211 1112233444 45788999999999
Q ss_pred cccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 004891 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (725)
Q Consensus 106 ~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 185 (725)
-|.+.+||.....+||+++|.+++.++.- .|.++.+..+...--...|.+ .-.++|.++++.|+||+|+|
T Consensus 267 iGeGgSGGAlalg~aD~VlMle~A~ysVi------sPEgaAsILwkd~~~A~eAAe----alkitA~dL~~~GiID~II~ 336 (431)
T PLN03230 267 IGEGGSGGALAIGCGNRMLMMENAVYYVA------SPEACAAILWKSAAAAPKAAE----ALRITAAELVKLGVVDEIVP 336 (431)
T ss_pred eCCCCcHHHHHhhcCCEEEEecCCEEEec------CHHHHHHHHhccccchHHHHH----HcCCCHHHHHhCCCCeEecc
Confidence 99996666555557899999999876642 244444443333222222333 33899999999999999996
Q ss_pred c
Q 004891 186 S 186 (725)
Q Consensus 186 ~ 186 (725)
.
T Consensus 337 E 337 (431)
T PLN03230 337 E 337 (431)
T ss_pred C
Confidence 3
No 273
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.69 E-value=6.6e-05 Score=78.16 Aligned_cols=71 Identities=17% Similarity=0.222 Sum_probs=55.9
Q ss_pred ceEEEEcCC-CCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G-~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (725)
++|+|||.| .||.+||..|.++|+.|++|++....++ +.+++
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~-------------------------------------e~~~~ 202 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAK-------------------------------------ALCRQ 202 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHH-------------------------------------HHHhc
Confidence 689999996 9999999999999999999987643211 34578
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (725)
||+||.|++....+...+ +++++++++.+
T Consensus 203 ADIVIsavg~~~~v~~~~-------ik~GaiVIDvg 231 (301)
T PRK14194 203 ADIVVAAVGRPRLIDADW-------LKPGAVVIDVG 231 (301)
T ss_pred CCEEEEecCChhcccHhh-------ccCCcEEEEec
Confidence 999999998665444333 78999988654
No 274
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.67 E-value=7.5e-05 Score=78.37 Aligned_cols=89 Identities=20% Similarity=0.236 Sum_probs=61.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (725)
++|+|||+|.||.++|..|...|.+|++++++++..+.+. +.+. . .+. ..++ +.+++
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~-----------~~g~-~---------~~~-~~~l~~~l~~ 209 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARIT-----------EMGL-I---------PFP-LNKLEEKVAE 209 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HCCC-e---------eec-HHHHHHHhcc
Confidence 6899999999999999999999999999999987654431 1111 0 001 1122 45689
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (725)
+|+||.++|..+- . .+..+.+++++++++.+|
T Consensus 210 aDiVint~P~~ii-~----~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 210 IDIVINTIPALVL-T----ADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred CCEEEECCChHHh-C----HHHHhcCCCCeEEEEeCc
Confidence 9999999984321 1 234455678887775544
No 275
>PRK05442 malate dehydrogenase; Provisional
Probab=97.67 E-value=6.7e-05 Score=79.99 Aligned_cols=104 Identities=15% Similarity=0.144 Sum_probs=67.0
Q ss_pred cceEEEEcC-CCCcHHHHHHHHHCCC-------cEEEEeCChH--HHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcc
Q 004891 308 VRKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSE--YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK 377 (725)
Q Consensus 308 ~~kIaVIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~e--~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~ 377 (725)
..||+|||+ |.+|+++|..+...|. +++++|++++ .++...-.+.+....... . -.++
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~-~-----------~~i~ 71 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLA-G-----------VVIT 71 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcC-C-----------cEEe
Confidence 469999998 9999999999988765 7999999653 232211112111100000 0 0122
Q ss_pred cccCcccccCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891 378 GVLDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTS 424 (725)
Q Consensus 378 ~~~~~~~l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (725)
+.+++++++||+||.+.- .+..+.+++..+|.++.+++++++..|.
T Consensus 72 -~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN 131 (326)
T PRK05442 72 -DDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGN 131 (326)
T ss_pred -cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 456699999999998862 1334566667778888877887765553
No 276
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=97.66 E-value=0.00063 Score=68.70 Aligned_cols=97 Identities=13% Similarity=0.223 Sum_probs=75.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEE
Q 004891 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (725)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa 104 (725)
.+.++.+..+++.++++....+..+ .++|..- |+++.. ...+. +.|.+++.|+++.
T Consensus 69 ~~~I~i~dse~v~raI~~~~~~~~I-dLii~Tp------GG~v~A----------------A~~I~-~~l~~~~~~v~v~ 124 (285)
T PF01972_consen 69 YRYIDIDDSEFVLRAIREAPKDKPI-DLIIHTP------GGLVDA----------------AEQIA-RALREHPAKVTVI 124 (285)
T ss_pred ceeEcHhhHHHHHHHHHhcCCCCce-EEEEECC------CCcHHH----------------HHHHH-HHHHhCCCCEEEE
Confidence 4678888999999999888776554 3334322 333321 11333 5678899999999
Q ss_pred EcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCch
Q 004891 105 VEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFG 145 (725)
Q Consensus 105 v~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g 145 (725)
|+..|+.+|.-++|+||-++|.+.+.+|--...+|-.|..+
T Consensus 125 VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~s 165 (285)
T PF01972_consen 125 VPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAAS 165 (285)
T ss_pred ECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChHH
Confidence 99999999999999999999999999999999999888644
No 277
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.64 E-value=0.0014 Score=68.62 Aligned_cols=137 Identities=17% Similarity=0.090 Sum_probs=88.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEE
Q 004891 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (725)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav 105 (725)
-+++++-++...+.++.++.. .+-+|-|--.+++++ |.+-.+. .....+.+.+ ..+.....|+|++|
T Consensus 130 G~~~p~g~rKa~R~m~lA~~f-~iPvVtlvDTpGa~~-g~~aE~~----------G~~~aia~~l-~a~s~~~VP~IsVV 196 (316)
T TIGR00513 130 GMPAPEGYRKALRLMKMAERF-KMPIITFIDTPGAYP-GIGAEER----------GQSEAIARNL-REMARLGVPVICTV 196 (316)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCCCC-CHHHHHH----------HHHHHHHHHH-HHHHcCCCCEEEEE
Confidence 467788899998888888754 455666643333333 3322111 0112233444 45778899999999
Q ss_pred cccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 004891 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (725)
Q Consensus 106 ~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 185 (725)
-|.|.|||..-...||+++|.+++.++. +++-|++..|-+- ..++.+..- -..++|.++++.|+||+|+|
T Consensus 197 iGeggsGGAla~~~aD~v~m~~~a~~sV-------isPEg~a~Il~kd--~~~a~~aae-~~~~ta~~l~~~G~iD~II~ 266 (316)
T TIGR00513 197 IGEGGSGGALAIGVGDKVNMLEYSTYSV-------ISPEGCAAILWKD--ASKAPKAAE-AMKITAPDLKELGLIDSIIP 266 (316)
T ss_pred ecccccHHHhhhccCCEEEEecCceEEe-------cCHHHHHHHhccc--hhhHHHHHH-HccCCHHHHHHCCCCeEecc
Confidence 9999888775555799999999987763 3333333333322 122222222 36778999999999999996
No 278
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=97.63 E-value=0.0021 Score=67.35 Aligned_cols=137 Identities=13% Similarity=0.084 Sum_probs=89.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEE
Q 004891 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (725)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav 105 (725)
..++++-++...+.++.++.. .+-+|-|--.+++++ |.+-.+. .....+.+.+ ..+.....|+|++|
T Consensus 133 G~~~p~g~rKa~Rlm~lA~~f-~lPIItlvDTpGA~~-G~~AE~~----------G~~~aiar~l-~~~a~~~VP~IsVV 199 (322)
T CHL00198 133 GMPSPGGYRKALRLMKHANKF-GLPILTFIDTPGAWA-GVKAEKL----------GQGEAIAVNL-REMFSFEVPIICTI 199 (322)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcCc-CHHHHHH----------hHHHHHHHHH-HHHHcCCCCEEEEE
Confidence 467788999999988888764 455555543333443 3221110 0112233344 34678999999999
Q ss_pred cccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 004891 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (725)
Q Consensus 106 ~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 185 (725)
-|.|.|||.-....||+++|.+++.|+.- .|.++.+..+.. ..+|.+ +...-+++|++.++.|+||+|+|
T Consensus 200 iGeggsGGAlal~~aD~V~m~e~a~~sVi------sPEg~a~Il~~d---~~~a~~-aA~~~~ita~dL~~~giiD~ii~ 269 (322)
T CHL00198 200 IGEGGSGGALGIGIGDSIMMLEYAVYTVA------TPEACAAILWKD---SKKSLD-AAEALKITSEDLKVLGIIDEIIP 269 (322)
T ss_pred eCcccHHHHHhhhcCCeEEEeCCeEEEec------CHHHHHHHHhcc---hhhHHH-HHHHcCCCHHHHHhCCCCeEecc
Confidence 99998888655556999999999887642 244444333332 233333 34456799999999999999996
No 279
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=97.63 E-value=8.4e-05 Score=76.76 Aligned_cols=117 Identities=19% Similarity=0.168 Sum_probs=79.8
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHC--CC-----cEEEEeCChHHHHHHHHHHHHHHHhhHHcC-CCCHHHHHHhhcCcc
Q 004891 306 RGVRKVAVIGGGLMGSGIATAHILN--NI-----YVVLKEVNSEYLLKGIKTIEANVRGLVTRG-KLTQDKANNALKMLK 377 (725)
Q Consensus 306 ~~~~kIaVIG~G~mG~~iA~~l~~~--G~-----~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g-~~~~~~~~~~~~~i~ 377 (725)
+.-.||+|||.|++|++||..+.+. ++ +|.+|-..++.-.. ...+.+.+.+..+.- ++.. .....++.
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~-~~~L~eiIN~~heN~KYlpg---~~lP~Nvv 94 (372)
T KOG2711|consen 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGE-AEKLTEIINSRHENVKYLPG---IKLPENVV 94 (372)
T ss_pred cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCCh-hHHHHHHhccccccccccCC---ccCCCCeE
Confidence 3447999999999999999988764 22 67787665543332 111222222222211 1110 11224566
Q ss_pred cccCc-ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh
Q 004891 378 GVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 428 (725)
Q Consensus 378 ~~~~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~ 428 (725)
.++|+ +++.+||++|..+| .+....++++|..++++++..+|.+.++..
T Consensus 95 Av~dl~ea~~dADilvf~vP--hQf~~~ic~~l~g~vk~~~~aISL~KG~e~ 144 (372)
T KOG2711|consen 95 AVPDLVEAAKDADILVFVVP--HQFIPRICEQLKGYVKPGATAISLIKGVEV 144 (372)
T ss_pred ecchHHHHhccCCEEEEeCC--hhhHHHHHHHHhcccCCCCeEEEeecceec
Confidence 67777 78899999999999 888899999999999999998887777654
No 280
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.62 E-value=0.00013 Score=68.63 Aligned_cols=88 Identities=23% Similarity=0.248 Sum_probs=56.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (725)
+++.|+|.|..|+++|+.|...|.+|+++|++|-++-++. . +..+..+-.++++.+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~-----------~-------------dGf~v~~~~~a~~~a 79 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAA-----------M-------------DGFEVMTLEEALRDA 79 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHH-----------H-------------TT-EEE-HHHHTTT-
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhh-----------h-------------cCcEecCHHHHHhhC
Confidence 5799999999999999999999999999999997654432 1 122222222678899
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (725)
Q Consensus 389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (725)
|++|.+.....-+..+-|+ .+++++|+++.++
T Consensus 80 di~vtaTG~~~vi~~e~~~----~mkdgail~n~Gh 111 (162)
T PF00670_consen 80 DIFVTATGNKDVITGEHFR----QMKDGAILANAGH 111 (162)
T ss_dssp SEEEE-SSSSSSB-HHHHH----HS-TTEEEEESSS
T ss_pred CEEEECCCCccccCHHHHH----HhcCCeEEeccCc
Confidence 9999988654444444444 4789999986555
No 281
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.60 E-value=0.00012 Score=77.94 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=67.5
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC-------cEEEEeCCh--HHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccc
Q 004891 309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG 378 (725)
Q Consensus 309 ~kIaVIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~--e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~ 378 (725)
-||+|||+ |.+|+++|..++..|. +++++|+++ +.++.-...+.+....... + -.+.
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~-~-----------~~i~- 70 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLA-G-----------VVAT- 70 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccC-C-----------cEEe-
Confidence 58999998 9999999999998886 799999965 3233221112111100000 0 0122
Q ss_pred ccCcccccCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891 379 VLDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTS 424 (725)
Q Consensus 379 ~~~~~~l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (725)
..+++++++||+||.+.- .+..+.+++..++.++.+++++++..|.
T Consensus 71 ~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN 130 (323)
T TIGR01759 71 TDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGN 130 (323)
T ss_pred cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 456799999999998862 1344566777788888876787765543
No 282
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=97.59 E-value=0.002 Score=67.62 Aligned_cols=137 Identities=18% Similarity=0.122 Sum_probs=91.0
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEE
Q 004891 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (725)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav 105 (725)
-+++++-++...+.++.++.. .+-+|-|.-.+++++ |.+-.+ ......+.+.+ ..+.....|+|++|
T Consensus 130 G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDTpGa~~-G~~aE~----------~G~~~aia~~l-~~~a~~~VP~IsVI 196 (319)
T PRK05724 130 GMPRPEGYRKALRLMKMAEKF-GLPIITFIDTPGAYP-GIGAEE----------RGQSEAIARNL-REMARLKVPIICTV 196 (319)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCCC-CHHHHh----------ccHHHHHHHHH-HHHhCCCCCEEEEE
Confidence 467888899888888888754 566666654334433 332211 01122333445 55788999999999
Q ss_pred cccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 004891 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (725)
Q Consensus 106 ~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 185 (725)
-|.|.|||..-...||+++|.+++.++. +++-|++..|-+- ..++.+..- ...+++.++++.|+||+|+|
T Consensus 197 iGeg~sGGAla~~~aD~v~m~~~A~~sv-------isPEg~a~Il~~~--~~~a~~aae-~~~ita~~l~~~g~iD~II~ 266 (319)
T PRK05724 197 IGEGGSGGALAIGVGDRVLMLEYSTYSV-------ISPEGCASILWKD--ASKAPEAAE-AMKITAQDLKELGIIDEIIP 266 (319)
T ss_pred eCCccHHHHHHHhccCeeeeecCceEee-------cCHHHHHHHHhcC--chhHHHHHH-HcCCCHHHHHHCCCceEecc
Confidence 9999888875555699999998887753 3434444444332 233433333 56689999999999999996
No 283
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=97.58 E-value=8.4e-05 Score=70.60 Aligned_cols=102 Identities=27% Similarity=0.354 Sum_probs=65.3
Q ss_pred HhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccc------------cCC---------CCCch-----hh
Q 004891 94 IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGV---------IPGFG-----GT 147 (725)
Q Consensus 94 l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~------------~Gl---------~p~~g-----~~ 147 (725)
.....|||+|.++|.|..+++-|+.+||-+++.+.+.++...+. +|+ ....+ .+
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s 81 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS 81 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence 35689999999999999999999999999999998877765444 222 11111 00
Q ss_pred ----chH-----------------hhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHH
Q 004891 148 ----QRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLW 196 (725)
Q Consensus 148 ----~~l-----------------~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~ 196 (725)
..+ .|-+... ..+-+..|..+++++|++.||||++-..+++...+.+.
T Consensus 82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~-~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~~ 150 (154)
T PF01343_consen 82 EEERENLQELLDELYDQFVNDVAEGRGLSPD-DVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAKL 150 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HH-HHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCHH-HHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHHH
Confidence 001 1111112 22336789999999999999999998777776665543
No 284
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=97.58 E-value=0.00028 Score=75.10 Aligned_cols=110 Identities=15% Similarity=0.090 Sum_probs=74.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (725)
++|||||.|.+|..+|..+..-|.+|..||+..... ..+ .. ..++ +.++.
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~---------------~~~-------------~~-~~~l~ell~~ 196 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK---------------NEE-------------YE-RVSLEELLKT 196 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc---------------ccC-------------ce-eecHHHHhhc
Confidence 689999999999999999998899999999863210 000 11 1233 56799
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhcccCC-CCcEEEEecCC
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFFS 448 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~-~~r~ig~h~~~ 448 (725)
||+|+.++|-..+.+.-+=++..+.++++++++..+-+ +.-..+.+.+.. +-. .++..|.
T Consensus 197 sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~ 259 (311)
T PRK08410 197 SDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLE 259 (311)
T ss_pred CCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCC
Confidence 99999999976665444445677788999998643333 333455555543 233 5666553
No 285
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=97.58 E-value=0.0017 Score=73.89 Aligned_cols=138 Identities=12% Similarity=0.054 Sum_probs=89.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEE
Q 004891 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (725)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav 105 (725)
-+.+++-++...+.++.++.. .+-+|-|-=.+++++ |.+-.+. .....+.+.+ ..+.....|+|++|
T Consensus 221 G~~~peGyRKAlRlmkLAekf-gLPIVtLVDTpGA~p-G~~AEe~----------Gq~~aIArnl-~amasl~VP~ISVV 287 (762)
T PLN03229 221 GMPTPHGYRKALRMMYYADHH-GFPIVTFIDTPGAYA-DLKSEEL----------GQGEAIAHNL-RTMFGLKVPIVSIV 287 (762)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CchhHHH----------hHHHHHHHHH-HHHhCCCCCEEEEE
Confidence 467788888888888887754 455555543333333 3222221 0112233444 45778999999999
Q ss_pred cccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 004891 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (725)
Q Consensus 106 ~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 185 (725)
-|.|.|||......||+++|.+++.++. +-|.++.+..+... .+|.+ +...-.++|++.+++|+||+|+|
T Consensus 288 iGeggSGGAlA~g~aD~VlMle~A~~sV------isPEgaAsILwkd~---~~A~e-AAe~lkiTa~dL~~lGiiD~IIp 357 (762)
T PLN03229 288 IGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSA---KAAPK-AAEKLRITAQELCRLQIADGIIP 357 (762)
T ss_pred eCCcchHHHHHhhcCCEEEEecCCeEEe------cCHHHHHHHHhcCc---ccHHH-HHHHcCCCHHHHHhCCCCeeecc
Confidence 9999888887777899999999887653 12444433333222 22222 34556899999999999999997
Q ss_pred c
Q 004891 186 S 186 (725)
Q Consensus 186 ~ 186 (725)
.
T Consensus 358 E 358 (762)
T PLN03229 358 E 358 (762)
T ss_pred C
Confidence 3
No 286
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.54 E-value=0.0035 Score=65.46 Aligned_cols=158 Identities=15% Similarity=0.166 Sum_probs=101.7
Q ss_pred EEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHH
Q 004891 16 AIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL 93 (725)
Q Consensus 16 ~~i~l~~p~--~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (725)
..|.-+++. .-+++...-+.+.++++.+... .+-+|.|.-.|+ +.++| ... . ...+.. ....+ .+
T Consensus 123 V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsgG-----armqE---gi~-s-L~~~ak-~~~a~-~~ 189 (292)
T PRK05654 123 VVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASGG-----ARMQE---GLL-S-LMQMAK-TSAAL-KR 189 (292)
T ss_pred EEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCC-----cchhh---hhh-H-HHhHHH-HHHHH-HH
Confidence 334445663 5899999999999999988765 567777764442 22221 000 0 001111 11223 23
Q ss_pred HhhCCCcEEEEEcccccchhh-HHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHH
Q 004891 94 IEDCKKPIVAAVEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172 (725)
Q Consensus 94 l~~~~kp~Iaav~G~a~GgG~-~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~ 172 (725)
+.....|.|+++.|+|+||+. ..++.||++||.++|.+++.... .+...+|.. + .-+.-+++
T Consensus 190 ~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------vie~~~~e~-----l-pe~~~~ae 252 (292)
T PRK05654 190 LSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPR-----------VIEQTVREK-----L-PEGFQRAE 252 (292)
T ss_pred HHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHH-----------HHHhhhhhh-----h-hhhhcCHH
Confidence 556789999999999999965 45778999999999888763221 111111111 1 11223677
Q ss_pred HHHHcCCcceecCcchHHHHHHHHHHHHHhc
Q 004891 173 EGWKLGLIDAVVTSEELLKVSRLWALDIAAR 203 (725)
Q Consensus 173 eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 203 (725)
-+.+.|+||.|+++.++.....++.+.+...
T Consensus 253 ~~~~~G~vD~Vv~~~e~r~~l~~~L~~~~~~ 283 (292)
T PRK05654 253 FLLEHGAIDMIVHRRELRDTLASLLALHTKQ 283 (292)
T ss_pred HHHhCCCCcEEECHHHHHHHHHHHHHHHhcC
Confidence 7889999999999999998888888776544
No 287
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.54 E-value=0.00036 Score=77.01 Aligned_cols=100 Identities=16% Similarity=0.201 Sum_probs=69.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (725)
++|||||.|.+|..+|..+..-|.+|+.||+++... . .......++ +.++.
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----------------~------------~~~~~~~~l~ell~~ 203 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----------------L------------GNARQVGSLEELLAQ 203 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----------------c------------CCceecCCHHHHHhh
Confidence 689999999999999999999999999999864210 0 011112244 56799
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhcccC
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS 436 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~ 436 (725)
||+|+.++|-..+.+.-+=.+....++++++++..+-+ +....+.+.+.
T Consensus 204 sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~ 254 (409)
T PRK11790 204 SDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALK 254 (409)
T ss_pred CCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHH
Confidence 99999999976665444435677788999988643323 33335555554
No 288
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=97.53 E-value=0.00032 Score=77.22 Aligned_cols=102 Identities=16% Similarity=0.151 Sum_probs=71.2
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHC-------CC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcc-
Q 004891 309 RKVAVIGG-GLMGSGIATAHILN-------NI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK- 377 (725)
Q Consensus 309 ~kIaVIG~-G~mG~~iA~~l~~~-------G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~- 377 (725)
-||+|||+ |.+|.++|..++.. |+ +++++|++++.++...-.+.+....+ +..+.
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~--------------~~~v~i 166 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPL--------------LREVSI 166 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhh--------------cCceEE
Confidence 58999999 99999999999988 66 89999999998765443333322111 11233
Q ss_pred cccCcccccCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891 378 GVLDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTS 424 (725)
Q Consensus 378 ~~~~~~~l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (725)
.+.+++++++||+||.+.- .+..+.+++...|.++..++++++..+.
T Consensus 167 ~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsN 227 (444)
T PLN00112 167 GIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGN 227 (444)
T ss_pred ecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCC
Confidence 2466799999999998862 1344555666677775567777765443
No 289
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=97.49 E-value=0.0006 Score=72.84 Aligned_cols=101 Identities=13% Similarity=0.096 Sum_probs=69.5
Q ss_pred ceEEEEcCCCCcHHHHHHHH-HCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891 309 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~-~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (725)
++|||||.|.+|..+|..+. .-|.+|..||+....-... ..+ ... .++ +.++
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~------------~~~-------------~~~-~~l~ell~ 199 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEE------------RFN-------------ARY-CDLDTLLQ 199 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHH------------hcC-------------cEe-cCHHHHHH
Confidence 68999999999999999987 6789999999874221000 000 111 233 5679
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-C--CChHHHhcccC
Q 004891 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTS 436 (725)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~ 436 (725)
+||+|+.++|-..+.+.-+=.+....++++++++ |++ + +.-..+.+.+.
T Consensus 200 ~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~vVde~AL~~AL~ 251 (323)
T PRK15409 200 ESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFI-NAGRGPVVDENALIAALQ 251 (323)
T ss_pred hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 9999999999777655444456777889999886 454 3 33345555554
No 290
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.47 E-value=0.0008 Score=66.81 Aligned_cols=39 Identities=23% Similarity=0.378 Sum_probs=35.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (725)
++|+|+|+|.||..+|+.|.+.|++|+++|++++.++..
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~ 67 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARA 67 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 579999999999999999999999999999998876654
No 291
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.47 E-value=0.0023 Score=63.84 Aligned_cols=137 Identities=16% Similarity=0.173 Sum_probs=92.0
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEE--EEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEE
Q 004891 26 NALAIPIVAGLKDKFEEATSRDDVKAI--VLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (725)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~~~~v~~v--Vl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia 103 (725)
-.++..+...+...|..++..+.-+-| .|.+.|+...+ ...++ +.|...+.||..
T Consensus 61 ~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~a----------------------GlaIy-d~m~~~~~~V~t 117 (221)
T PRK14514 61 TQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYA----------------------GLGIY-DTMQFISSDVAT 117 (221)
T ss_pred CEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhh----------------------HHHHH-HHHHhcCCCEEE
Confidence 357788888888877766643322222 22444432111 12445 668889999999
Q ss_pred EEcccccchhhHHhhhcCE--EEeeCCceEeCcccccCCCCCchh-h---------------chHhhhhC--HHHHHHHH
Q 004891 104 AVEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGG-T---------------QRLPRLVG--LSKAIEMM 163 (725)
Q Consensus 104 av~G~a~GgG~~lalacD~--~ia~~~a~~~~pe~~~Gl~p~~g~-~---------------~~l~r~vG--~~~a~~l~ 163 (725)
.+-|.|.+.|.-|++++|. |++.++++|.+-...-|.. +... . ..+.+.-| .....+++
T Consensus 118 v~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~-G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~ 196 (221)
T PRK14514 118 ICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQ-GQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADS 196 (221)
T ss_pred EEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh
Confidence 9999999999999999996 9999999988766543321 1111 0 00122223 34555667
Q ss_pred HcCCCCCHHHHHHcCCcceecCc
Q 004891 164 LLSKSITSEEGWKLGLIDAVVTS 186 (725)
Q Consensus 164 l~g~~~~a~eA~~~Glv~~vv~~ 186 (725)
-....++|+||++.||||+|+..
T Consensus 197 ~rd~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 197 DRDYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred hcCccCCHHHHHHcCCccEEeec
Confidence 77889999999999999999853
No 292
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=97.47 E-value=9.8e-05 Score=80.16 Aligned_cols=110 Identities=11% Similarity=0.075 Sum_probs=71.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (725)
++|||||+|.||+.+|..+...|++|++||+.....+ + ... ..++ +.+++
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~----------------~------------~~~-~~~l~ell~~ 167 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE----------------G------------DGD-FVSLERILEE 167 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc----------------c------------Ccc-ccCHHHHHhh
Confidence 6899999999999999999999999999998543210 0 001 1233 45689
Q ss_pred CCEEEEeccCChH---HHHHHH-HHHHHhCCCCeEEEecCCCCC--hHHHhcccC-CCCcEEEEecC
Q 004891 388 VDMVIEAVIESVP---LKQKIF-SELEKACPPHCILATNTSTID--LNIVGEKTS-SQDRIIGAHFF 447 (725)
Q Consensus 388 aDlVIeavpe~~~---~k~~v~-~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~-~~~r~ig~h~~ 447 (725)
||+|+.++|-..+ ....++ ++....++++++++..+-+-. ...+.+.+. ......++..|
T Consensus 168 aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~ 234 (381)
T PRK00257 168 CDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVW 234 (381)
T ss_pred CCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCC
Confidence 9999999995442 234455 456677899998874333333 334444443 22334455544
No 293
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.46 E-value=0.00013 Score=77.71 Aligned_cols=100 Identities=16% Similarity=0.104 Sum_probs=65.9
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC-------cEEEEeCChHH--HHHHHHHHHHHHHhhHHcCCCCHHHHHHhhc--Cc
Q 004891 309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKANNALK--ML 376 (725)
Q Consensus 309 ~kIaVIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~e~--~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~--~i 376 (725)
.||+|||+ |.+|+++|..++..|. +++++|++++. ++...-.+.+... .... .+
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~--------------~~~~~~~i 68 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAF--------------PLLAEIVI 68 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccc--------------cccCceEE
Confidence 58999999 9999999999998887 79999996432 2221111111000 0001 12
Q ss_pred ccccCcccccCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891 377 KGVLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT 423 (725)
Q Consensus 377 ~~~~~~~~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (725)
. +.+++++++||+||.+.-- +..+.+++..+|.++.+++++++..|
T Consensus 69 ~-~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (322)
T cd01338 69 T-DDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG 128 (322)
T ss_pred e-cCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 2 4566899999999988621 34456667777888886677666544
No 294
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.46 E-value=0.00048 Score=71.78 Aligned_cols=80 Identities=23% Similarity=0.180 Sum_probs=54.0
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHC--CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-
Q 004891 307 GVRKVAVIGGGLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (725)
Q Consensus 307 ~~~kIaVIG~G~mG~~iA~~l~~~--G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~- 382 (725)
...||||||+|.||..++..+.+. +++|+ ++|+++++.+...+. ++.....+++
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~----------------------~g~~~~~~~~e 62 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWG----------------------LRRPPPVVPLD 62 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHh----------------------cCCCcccCCHH
Confidence 347899999999999999999874 78876 889998875543211 0111123334
Q ss_pred ccccCCCEEEEeccCChHHHHHHHHHHH
Q 004891 383 SEFKDVDMVIEAVIESVPLKQKIFSELE 410 (725)
Q Consensus 383 ~~l~~aDlVIeavpe~~~~k~~v~~~l~ 410 (725)
+.+.++|+|++|.|.+. -.++..+..
T Consensus 63 ell~~~D~Vvi~tp~~~--h~e~~~~aL 88 (271)
T PRK13302 63 QLATHADIVVEAAPASV--LRAIVEPVL 88 (271)
T ss_pred HHhcCCCEEEECCCcHH--HHHHHHHHH
Confidence 34578999999999543 345544443
No 295
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=97.46 E-value=0.0014 Score=66.74 Aligned_cols=198 Identities=19% Similarity=0.235 Sum_probs=118.8
Q ss_pred cceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCChHHHHHHHHH----HHHHHHhhHHcCCCCHHHHHHhhcCcccccC
Q 004891 308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKT----IEANVRGLVTRGKLTQDKANNALKMLKGVLD 381 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~--G~~V~~~d~~~e~~~~~~~~----i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 381 (725)
|.||.-||+|..|++....++.. ..+|+++|++..++..-... ++-.|+..++. ..-.++-+++|
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~---------crgknlffstd 71 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQ---------CRGKNLFFSTD 71 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHH---------hcCCceeeecc
Confidence 46899999999999987776654 45899999999887653211 11112222211 11134667788
Q ss_pred c-ccccCCCEEEEecc-------------CChHHHHHHHHHHHHhCCCCeEEEecCCCCChHH---HhcccCCCCcEEEE
Q 004891 382 Y-SEFKDVDMVIEAVI-------------ESVPLKQKIFSELEKACPPHCILATNTSTIDLNI---VGEKTSSQDRIIGA 444 (725)
Q Consensus 382 ~-~~l~~aDlVIeavp-------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~---l~~~~~~~~r~ig~ 444 (725)
. .+++++|+|+.+|- .|+......-+.|.+....+.|++ .-|+.|+.. +...+.+... |+
T Consensus 72 iekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivv-ekstvpv~aaesi~~il~~n~~--~i 148 (481)
T KOG2666|consen 72 IEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVV-EKSTVPVKAAESIEKILNHNSK--GI 148 (481)
T ss_pred hHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEE-eeccccchHHHHHHHHHhcCCC--Cc
Confidence 7 57899999999983 255566666677888877788875 456666542 2223332222 44
Q ss_pred ec------------------CCCCCCCCeeeEecCCCCC--HHHHHHHHHHHHHcCC-eeEEE-----cCCcchhhhhhh
Q 004891 445 HF------------------FSPAHVMPLLEIVRTERTS--AQVILDLMTVGKIIKK-VPVVV-----GNCTGFAVNRAF 498 (725)
Q Consensus 445 h~------------------~~p~~~~~lveii~~~~t~--~e~~~~~~~l~~~lGk-~~v~v-----~d~~Gfi~nRl~ 498 (725)
|| +||-+. ++.|..|. ..+++.+..+++.+-. ..+++ .+-..+.+|-++
T Consensus 149 ~fqilsnpeflaegtaikdl~npdrv-----ligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanafl 223 (481)
T KOG2666|consen 149 KFQILSNPEFLAEGTAIKDLFNPDRV-----LIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFL 223 (481)
T ss_pred eeEeccChHHhcccchhhhhcCCceE-----EECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHH
Confidence 44 344333 77777763 3466777777776543 22333 233444555554
Q ss_pred HH---HHHHHHHHHHc-CCCHHHHHHHH
Q 004891 499 FP---YSQSARLLVSL-GVDVFRIDSAI 522 (725)
Q Consensus 499 ~a---~~~Ea~~l~~~-Gv~~~dID~~~ 522 (725)
.. -+|....+.+. |.+++++..+.
T Consensus 224 aqrissins~salceatgadv~eva~av 251 (481)
T KOG2666|consen 224 AQRISSINSMSALCEATGADVSEVAYAV 251 (481)
T ss_pred HHHHhhhHHHHHHHHhcCCCHHHHHHHh
Confidence 32 22333333444 88999988876
No 296
>PLN00106 malate dehydrogenase
Probab=97.45 E-value=0.00042 Score=73.74 Aligned_cols=99 Identities=18% Similarity=0.284 Sum_probs=63.6
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccc-ccC---
Q 004891 309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLD--- 381 (725)
Q Consensus 309 ~kIaVIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~--- 381 (725)
.||+|||+ |.+|+.+|..++..+. +++++|+++ ....+.+ +.+. . . .-.+.. +.+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~-~~g~a~D-l~~~-------~--------~-~~~i~~~~~~~d~ 80 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN-TPGVAAD-VSHI-------N--------T-PAQVRGFLGDDQL 80 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC-CCeeEch-hhhC-------C--------c-CceEEEEeCCCCH
Confidence 59999999 9999999999998776 899999987 1111110 0000 0 0 002221 223
Q ss_pred cccccCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecCCCC
Q 004891 382 YSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTI 426 (725)
Q Consensus 382 ~~~l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~ 426 (725)
++++++||+||.+.- .+..+.+++.+.+.++. ++++++..|...
T Consensus 81 ~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivivvSNPv 138 (323)
T PLN00106 81 GDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNIISNPV 138 (323)
T ss_pred HHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCCc
Confidence 478999999998862 34556667777788776 566655434333
No 297
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.44 E-value=0.00049 Score=71.57 Aligned_cols=86 Identities=22% Similarity=0.258 Sum_probs=57.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC--CCc-EEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cc
Q 004891 309 RKVAVIGGGLMGSGIATAHILN--NIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~--G~~-V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (725)
.||+|||+|.||..++..+.+. +++ +.++|+++++.+...+. .+ ....+++ +.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~----------~~-------------~~~~~~~~el 58 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASK----------TG-------------AKACLSIDEL 58 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHh----------cC-------------CeeECCHHHH
Confidence 5899999999999999999876 455 55899998876553210 01 1223444 34
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEE
Q 004891 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (725)
Q Consensus 385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~ 420 (725)
+.++|+|++|+| .....++..++.+. ..+.++.
T Consensus 59 l~~~DvVvi~a~--~~~~~~~~~~al~~-Gk~Vvv~ 91 (265)
T PRK13304 59 VEDVDLVVECAS--VNAVEEVVPKSLEN-GKDVIIM 91 (265)
T ss_pred hcCCCEEEEcCC--hHHHHHHHHHHHHc-CCCEEEE
Confidence 588999999998 44445555555442 3444443
No 298
>PRK06932 glycerate dehydrogenase; Provisional
Probab=97.42 E-value=0.00097 Score=71.03 Aligned_cols=109 Identities=14% Similarity=0.140 Sum_probs=73.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (725)
++|+|||.|.+|..+|..+..-|.+|+.||+.... .. ..+ ..++ +.++.
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~------------~~~----------------~~~l~ell~~ 197 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC------------REG----------------YTPFEEVLKQ 197 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc------------ccc----------------cCCHHHHHHh
Confidence 68999999999999999998889999999975321 00 000 1233 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhcccCC-CCcEEEEecC
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFF 447 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~-~~r~ig~h~~ 447 (725)
||+|+.++|-..+...-+=++....++++++++..+-+ +....+.+.+.. .-.-.++..|
T Consensus 198 sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~ 260 (314)
T PRK06932 198 ADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVL 260 (314)
T ss_pred CCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecC
Confidence 99999999966664443335677788999988643323 334455555542 2233455544
No 299
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=97.41 E-value=0.0023 Score=62.86 Aligned_cols=137 Identities=18% Similarity=0.182 Sum_probs=94.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEE
Q 004891 27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (725)
Q Consensus 27 al~~~~~~~l~~~l~~~~~~~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa 104 (725)
.++.++..++...|..++.++..+-|.+ .+.| +|+.. ...++ +.|...+.||...
T Consensus 33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpG------G~v~~----------------g~aIy-d~m~~~~~~V~t~ 89 (196)
T PRK12551 33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPG------GSVYD----------------GLGIF-DTMQHVKPDVHTV 89 (196)
T ss_pred eecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCC------cchhh----------------HHHHH-HHHHhcCCCEEEE
Confidence 4889999999999999986543343333 3433 23211 12445 6688889999999
Q ss_pred EcccccchhhHHhhhcCE--EEeeCCceEeCcccccCCCCCchh-h---------------chHhhhhC--HHHHHHHHH
Q 004891 105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGG-T---------------QRLPRLVG--LSKAIEMML 164 (725)
Q Consensus 105 v~G~a~GgG~~lalacD~--~ia~~~a~~~~pe~~~Gl~p~~g~-~---------------~~l~r~vG--~~~a~~l~l 164 (725)
+-|.|.+.|.-|++++|- |++.+++++..-...-|. -+... . ..+.+.-| .....+++-
T Consensus 90 ~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~-~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~ 168 (196)
T PRK12551 90 CVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGA-RGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTD 168 (196)
T ss_pred EEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCccc-CCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhh
Confidence 999999999999999985 889999998876654332 11100 0 01122223 244556677
Q ss_pred cCCCCCHHHHHHcCCcceecCcc
Q 004891 165 LSKSITSEEGWKLGLIDAVVTSE 187 (725)
Q Consensus 165 ~g~~~~a~eA~~~Glv~~vv~~~ 187 (725)
....++|+||++.||||+|++..
T Consensus 169 rd~~msa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 169 RDFFMSPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred cCcCCCHHHHHHcCCCcEEeccC
Confidence 78889999999999999999653
No 300
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=97.40 E-value=0.00027 Score=74.86 Aligned_cols=98 Identities=17% Similarity=0.286 Sum_probs=64.2
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccc-c-cC--c
Q 004891 310 KVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-V-LD--Y 382 (725)
Q Consensus 310 kIaVIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~-~~--~ 382 (725)
||+|||+ |.+|+++|..++..|+ +++++|+++ ....+.+ + .... ....+.. + ++ +
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a~D-L--------~~~~--------~~~~i~~~~~~~~~~ 62 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVAAD-L--------SHIP--------TAASVKGFSGEEGLE 62 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEEch-h--------hcCC--------cCceEEEecCCCchH
Confidence 7999999 9999999999998886 899999987 2111111 1 1110 0012332 2 23 6
Q ss_pred ccccCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecCCCC
Q 004891 383 SEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTI 426 (725)
Q Consensus 383 ~~l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~ 426 (725)
+++++||+||.+.. .+..+.+++..++.++. |+++++..|...
T Consensus 63 ~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiivvsNPv 119 (312)
T TIGR01772 63 NALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMILVITNPV 119 (312)
T ss_pred HHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEecCch
Confidence 89999999998872 24556666667787774 666665444433
No 301
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.40 E-value=0.00045 Score=72.94 Aligned_cols=91 Identities=19% Similarity=0.241 Sum_probs=63.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (725)
+||.|||.|.+|..++..|...|.+|+++|+++++.+.+. ..|. + .+. ..++ +.+.+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~-----------~~G~-~---------~~~-~~~l~~~l~~ 210 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARIT-----------EMGL-S---------PFH-LSELAEEVGK 210 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HcCC-e---------eec-HHHHHHHhCC
Confidence 6899999999999999999999999999999987654432 1110 0 000 1122 45688
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 426 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~ 426 (725)
+|+||.++|... +-++..+.++++++|++.++..
T Consensus 211 aDiVI~t~p~~~-----i~~~~l~~~~~g~vIIDla~~p 244 (296)
T PRK08306 211 IDIIFNTIPALV-----LTKEVLSKMPPEALIIDLASKP 244 (296)
T ss_pred CCEEEECCChhh-----hhHHHHHcCCCCcEEEEEccCC
Confidence 999999998321 2234455678888887655543
No 302
>PRK06487 glycerate dehydrogenase; Provisional
Probab=97.39 E-value=0.00066 Score=72.44 Aligned_cols=107 Identities=14% Similarity=0.152 Sum_probs=73.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (725)
++|+|||.|.+|..+|..+..-|.+|+.||+..... . .. ..++ +.++.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~-~-----------------------------~~-~~~l~ell~~ 197 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPA-R-----------------------------PD-RLPLDELLPQ 197 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcc-c-----------------------------cc-ccCHHHHHHh
Confidence 689999999999999999998899999999863210 0 00 1123 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-C--CChHHHhcccCC-CCcEEEEecC
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTSS-QDRIIGAHFF 447 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~~-~~r~ig~h~~ 447 (725)
||+|+.++|-..+.+.-+=++..+.++++++++ |++ + +.-..+.+.+.. +-.-.++..|
T Consensus 198 sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lI-N~aRG~vVde~AL~~AL~~g~i~gAaLDVf 260 (317)
T PRK06487 198 VDALTLHCPLTEHTRHLIGARELALMKPGALLI-NTARGGLVDEQALADALRSGHLGGAATDVL 260 (317)
T ss_pred CCEEEECCCCChHHhcCcCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCeeEEEeecC
Confidence 999999999776654444466777889999886 444 3 333455555542 2233445544
No 303
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=97.38 E-value=0.00062 Score=73.84 Aligned_cols=101 Identities=18% Similarity=0.199 Sum_probs=67.9
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC-------cEEEE--eCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcc-
Q 004891 309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLK--EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK- 377 (725)
Q Consensus 309 ~kIaVIG~-G~mG~~iA~~l~~~G~-------~V~~~--d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~- 377 (725)
-||+|||+ |.+|+++|..++..|. .++++ |++++.++.-.-.+.+.... .+..+.
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~--------------~~~~v~i 110 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYP--------------LLREVSI 110 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhh--------------hcCceEE
Confidence 58999999 9999999999998876 24445 88888766543333322111 111233
Q ss_pred cccCcccccCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891 378 GVLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT 423 (725)
Q Consensus 378 ~~~~~~~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (725)
.+.+++++++||+||.+..- +..+.+++...|.++.+++++++..+
T Consensus 111 ~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs 170 (387)
T TIGR01757 111 GIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG 170 (387)
T ss_pred ecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC
Confidence 24567999999999987621 34455666677888777888776544
No 304
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.37 E-value=0.0063 Score=63.27 Aligned_cols=155 Identities=17% Similarity=0.196 Sum_probs=99.4
Q ss_pred EEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004891 18 ITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (725)
Q Consensus 18 i~l~~p~--~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (725)
|.-+++. .-+++....+.+..+++.+... .+-+|.|+..|++ -++| .. .....+.. ....+ .++.
T Consensus 124 v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dSgGa-----RmqE---g~--~sL~~~ak-~~~~~-~~~~ 190 (285)
T TIGR00515 124 VAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSASGGA-----RMQE---AL--LSLMQMAK-TSAAL-AKMS 190 (285)
T ss_pred EEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCCc-----cccc---ch--hHHHhHHH-HHHHH-HHHH
Confidence 3344553 4789999999999999988754 5677877654443 1211 00 00111111 11222 3356
Q ss_pred hCCCcEEEEEcccccchhh-HHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHH
Q 004891 96 DCKKPIVAAVEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG 174 (725)
Q Consensus 96 ~~~kp~Iaav~G~a~GgG~-~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA 174 (725)
....|.|+++.|+|+||+. ..++.+|+++|.++|.+++.... .+...+|. -+.-+.-+|+-+
T Consensus 191 ~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------Vie~ti~e------~lpe~~q~ae~~ 253 (285)
T TIGR00515 191 ERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR-----------VIEQTVRE------KLPEGFQTSEFL 253 (285)
T ss_pred cCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHH-----------HHHHHhcC------ccchhcCCHHHH
Confidence 6789999999999999965 45679999999999988874222 11111221 011112366668
Q ss_pred HHcCCcceecCcchHHHHHHHHHHHHHh
Q 004891 175 WKLGLIDAVVTSEELLKVSRLWALDIAA 202 (725)
Q Consensus 175 ~~~Glv~~vv~~~~l~~~a~~~a~~la~ 202 (725)
.+.|+||.|+++.++.+...++.+.+..
T Consensus 254 ~~~G~vD~iv~~~~~r~~l~~~L~~~~~ 281 (285)
T TIGR00515 254 LEHGAIDMIVHRPEMKKTLASLLAKLQN 281 (285)
T ss_pred HhCCCCcEEECcHHHHHHHHHHHHHHhh
Confidence 8999999999999998888887766543
No 305
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.36 E-value=0.00039 Score=73.53 Aligned_cols=98 Identities=18% Similarity=0.243 Sum_probs=63.4
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccc-cC---
Q 004891 309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LD--- 381 (725)
Q Consensus 309 ~kIaVIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~--- 381 (725)
.||+|||+ |.+|+++|..++..|. +++++|++ .++...-.+.+ .. ..-.+... .+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~--------~~--------~~~~i~~~~~~~~~ 62 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSH--------IN--------TPAKVTGYLGPEEL 62 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHh--------CC--------CcceEEEecCCCch
Confidence 38999999 9999999999998885 89999998 21111000111 10 00123322 32
Q ss_pred cccccCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004891 382 YSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTST 425 (725)
Q Consensus 382 ~~~l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 425 (725)
++++++||+||.+.- .+..+.+++...+.++. |+++++..|..
T Consensus 63 y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~-p~a~vivvtNP 119 (310)
T cd01337 63 KKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKAC-PKALILIISNP 119 (310)
T ss_pred HHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCc
Confidence 689999999998872 24456666667787774 56766544433
No 306
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=97.35 E-value=0.0005 Score=78.09 Aligned_cols=70 Identities=13% Similarity=0.170 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCH-HHHHHHHHHHHHHh
Q 004891 621 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGA-NYVYTSLKKWSQLY 691 (725)
Q Consensus 621 ~~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~-~~~~~~~~~~~~~~ 691 (725)
.--+.||++.++++||+.++++|++ |+++||.++..|+|++...-|||+..|..|. +.+.+.++++.+.+
T Consensus 184 ~gfi~nrl~~a~~~EA~~L~~~g~~-s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g~~~g~~~~~~~~~~~~ 254 (495)
T PRK07531 184 DAFVGDRLLEALWREALWLVKDGIA-TTEEIDDVIRYSFGLRWAQMGLFETYRIAGGEAGMRHFLAQFGPCL 254 (495)
T ss_pred cchhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhccCCCccccchHHHHHhcCcHHHHHHHHHHhchhh
Confidence 4468999999999999999999999 9999999999999987666799999999984 45556666655443
No 307
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.35 E-value=0.0027 Score=62.49 Aligned_cols=137 Identities=17% Similarity=0.232 Sum_probs=95.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCce--EEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEE
Q 004891 26 NALAIPIVAGLKDKFEEATSRDDVK--AIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (725)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~~~~v~--~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia 103 (725)
-.++.++-..+...|-.++.++.-+ -|-|.+.| +|+. ....++ +.|...+-||..
T Consensus 34 ~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpG------G~v~----------------~GlaIy-d~m~~~~~~V~T 90 (201)
T PRK14513 34 TPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPG------GEVY----------------AGLAIY-DTMRYIKAPVST 90 (201)
T ss_pred CEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCC------Cchh----------------hHHHHH-HHHHhcCCCEEE
Confidence 3588888888888888887644322 22234443 3321 122455 668889999999
Q ss_pred EEcccccchhhHHhhhcCE--EEeeCCceEeCcccccCCCCCchhhch-----------------HhhhhC--HHHHHHH
Q 004891 104 AVEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQR-----------------LPRLVG--LSKAIEM 162 (725)
Q Consensus 104 av~G~a~GgG~~lalacD~--~ia~~~a~~~~pe~~~Gl~p~~g~~~~-----------------l~r~vG--~~~a~~l 162 (725)
.+.|.|.+.|.-|++++|- |++.++|++-+.....|.. +..... +.+.-| .....++
T Consensus 91 i~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~ 168 (201)
T PRK14513 91 ICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRD 168 (201)
T ss_pred EEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 9999999999999999996 9999999998776654431 111111 122223 3455566
Q ss_pred HHcCCCCCHHHHHHcCCcceecCcc
Q 004891 163 MLLSKSITSEEGWKLGLIDAVVTSE 187 (725)
Q Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~~ 187 (725)
+-....++|+||++.||||+|+++.
T Consensus 169 ~~rd~~msa~EA~eyGliD~I~~~~ 193 (201)
T PRK14513 169 MERDYFMSPEEAKAYGLIDSVIEPT 193 (201)
T ss_pred hccCcccCHHHHHHcCCCcEEeccC
Confidence 7778889999999999999998653
No 308
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=97.34 E-value=0.021 Score=58.90 Aligned_cols=139 Identities=15% Similarity=0.225 Sum_probs=82.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhcC----CCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCc
Q 004891 25 VNALAIPIVAGLKDKFEEATSR----DDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKP 100 (725)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~~----~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 100 (725)
--++....-+.+..+++.+.+| ..+-+|.|.-.| |+.+++-.. . ...+.+. ...+ ..+... .|
T Consensus 72 GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSg-----GaRlqEg~~----~-L~~~a~i-~~~~-~~ls~~-vP 138 (274)
T TIGR03133 72 GGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTG-----GVRLQEANA----G-LIAIAEI-MRAI-LDARAA-VP 138 (274)
T ss_pred CcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCC-----CcChhhhHH----H-HHHHHHH-HHHH-HHHhCC-CC
Confidence 3678888888899999888752 123466664333 233322110 0 0011111 1222 124444 99
Q ss_pred EEEEEccc--ccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCH--HHHHHHHHcCCCCCHHHHHH
Q 004891 101 IVAAVEGL--ALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL--SKAIEMMLLSKSITSEEGWK 176 (725)
Q Consensus 101 ~Iaav~G~--a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~--~~a~~l~l~g~~~~a~eA~~ 176 (725)
+|+++.|+ |+||+..++.+||++||++++++++.-. ..+....|. -...+-.+.-+.+.++....
T Consensus 139 ~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP-----------~VIe~~~G~e~~~~~d~~l~~~~lGG~~~~~ 207 (274)
T TIGR03133 139 VIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGP-----------EVIEQEAGVEEFDSRDRALVWRTTGGKHRFL 207 (274)
T ss_pred EEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCH-----------HHHHHhcCCCccCHHHhcccccccchHhHhh
Confidence 99999999 8999999999999999999888876311 111111221 11222233334456667778
Q ss_pred cCCcceecCcc
Q 004891 177 LGLIDAVVTSE 187 (725)
Q Consensus 177 ~Glv~~vv~~~ 187 (725)
.|++|.+++.+
T Consensus 208 sG~~D~~v~dd 218 (274)
T TIGR03133 208 SGDADVLVEDD 218 (274)
T ss_pred cccceEEeCCH
Confidence 99999999764
No 309
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.31 E-value=0.00054 Score=73.08 Aligned_cols=92 Identities=17% Similarity=0.134 Sum_probs=60.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHH--CCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891 309 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~--~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (725)
++|+|||+|.||..++..+.. .+.+|++|+|++++.+...+.+.+ .+. .+....+. +.+
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~-------~g~-----------~~~~~~~~~~av 187 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRA-------QGF-----------DAEVVTDLEAAV 187 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------ceEEeCCHHHHH
Confidence 679999999999999986654 446899999999987776543221 110 12233444 567
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (725)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (725)
++||+||.|.+... .++.. +.+++++.|...++
T Consensus 188 ~~aDIVi~aT~s~~----pvl~~--~~l~~g~~i~~ig~ 220 (314)
T PRK06141 188 RQADIISCATLSTE----PLVRG--EWLKPGTHLDLVGN 220 (314)
T ss_pred hcCCEEEEeeCCCC----CEecH--HHcCCCCEEEeeCC
Confidence 89999988887442 22221 35677876644433
No 310
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.28 E-value=0.00066 Score=65.84 Aligned_cols=95 Identities=21% Similarity=0.291 Sum_probs=60.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCh---HHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccC----
Q 004891 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS---EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD---- 381 (725)
Q Consensus 310 kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~---e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~---- 381 (725)
||.|||+|.||+.++..|++.|. +++++|.+. +.+.+-. + .. .+-|.-..+.....+.++....+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~--~---~~--~~vg~~Ka~~~~~~l~~lnp~v~i~~~ 73 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQ--Y---FL--SQIGEPKVEALKENLREINPFVKIEAI 73 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhccc--c---cH--hhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence 68999999999999999999999 599999886 3332211 0 00 01122222222222222221111
Q ss_pred --------c-ccccCCCEEEEeccCChHHHHHHHHHHHHh
Q 004891 382 --------Y-SEFKDVDMVIEAVIESVPLKQKIFSELEKA 412 (725)
Q Consensus 382 --------~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~~ 412 (725)
. +.++++|+||+| .++.+.+..+.....+.
T Consensus 74 ~~~~~~~~~~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~ 112 (174)
T cd01487 74 NIKIDENNLEGLFGDCDIVVEA-FDNAETKAMLAESLLGN 112 (174)
T ss_pred EeecChhhHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHH
Confidence 1 346889999999 57888887777776665
No 311
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=97.27 E-value=0.016 Score=60.17 Aligned_cols=141 Identities=16% Similarity=0.137 Sum_probs=91.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEE
Q 004891 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (725)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa 104 (725)
.-++....-+.+.++++.+... .+-+|.++..|+ +-+++-.. . ...+... ...+.+....-..|.|++
T Consensus 146 gGSmG~v~geKi~ra~e~A~~~-rlPlV~l~~SGG-----ARmQEg~~----s-L~qmak~-saa~~~~~~~~~vP~Isv 213 (296)
T CHL00174 146 GGSMGSVVGEKITRLIEYATNE-SLPLIIVCASGG-----ARMQEGSL----S-LMQMAKI-SSALYDYQSNKKLFYISI 213 (296)
T ss_pred ccCcCHHHHHHHHHHHHHHHHc-CCCEEEEECCCC-----ccccccch----h-hhhhHHH-HHHHHHHHHcCCCCEEEE
Confidence 5789999999999999988765 466777765443 33322100 0 1111111 111212122467999999
Q ss_pred EcccccchhhHH-hhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCC-----CCHHHHHHcC
Q 004891 105 VEGLALGGGLEL-AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKS-----ITSEEGWKLG 178 (725)
Q Consensus 105 v~G~a~GgG~~l-alacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~-----~~a~eA~~~G 178 (725)
+.|+|.||+... ++.||++|+.+++.+++.-. +.... .+|+. -+|+-.++.|
T Consensus 214 l~gPt~GG~aas~a~l~Diiiae~~A~IgfAGP--------------------rVIe~--t~ge~lpe~fq~ae~l~~~G 271 (296)
T CHL00174 214 LTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGK--------------------RVIEQ--TLNKTVPEGSQAAEYLFDKG 271 (296)
T ss_pred EcCCCchHHHHHHHHcccEEEEeCCeEEEeeCH--------------------HHHHH--hcCCcCCcccccHHHHHhCc
Confidence 999999998755 66799999988887775421 11111 12332 3578888999
Q ss_pred CcceecCcchHHHHHHHHHHH
Q 004891 179 LIDAVVTSEELLKVSRLWALD 199 (725)
Q Consensus 179 lv~~vv~~~~l~~~a~~~a~~ 199 (725)
+||.+|+..++.+....+.+-
T Consensus 272 ~vD~iV~r~~lr~~l~~ll~~ 292 (296)
T CHL00174 272 LFDLIVPRNLLKGVLSELFQL 292 (296)
T ss_pred CceEEEcHHHHHHHHHHHHHh
Confidence 999999999988777666543
No 312
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.27 E-value=0.00026 Score=75.54 Aligned_cols=100 Identities=17% Similarity=0.151 Sum_probs=64.3
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCC-------cEEEEeCCh--HHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccc-
Q 004891 310 KVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG- 378 (725)
Q Consensus 310 kIaVIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~--e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~- 378 (725)
||+|||+ |.+|+.+|..|+..|. +++++|+++ +.++.....+.+... ........
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~--------------~~~~~~~i~ 67 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAF--------------PLLKGVVIT 67 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcc--------------cccCCcEEe
Confidence 7999999 9999999999998664 499999987 432221111111000 00011111
Q ss_pred ccCcccccCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891 379 VLDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNT 423 (725)
Q Consensus 379 ~~~~~~l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (725)
..+++++++||+||.+.- .+..+.+++..+|.++++|+++++..|
T Consensus 68 ~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 126 (323)
T cd00704 68 TDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG 126 (323)
T ss_pred cChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 345689999999998762 144456677777888876677666544
No 313
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.25 E-value=0.00061 Score=71.19 Aligned_cols=71 Identities=18% Similarity=0.223 Sum_probs=54.9
Q ss_pred ceEEEEc-CCCCcHHHHHHHHHCCCcEEEEe-CChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891 309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKE-VNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (725)
Q Consensus 309 ~kIaVIG-~G~mG~~iA~~l~~~G~~V~~~d-~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (725)
++|+||| .|.||.+||..|.++|++|++|+ ++++- + +.++
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l-~-------------------------------------e~~~ 200 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDL-P-------------------------------------AVCR 200 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCH-H-------------------------------------HHHh
Confidence 6899999 99999999999999999999995 65421 0 2456
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (725)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (725)
.||+||.|++....+...+ +++++++++.+.
T Consensus 201 ~ADIVIsavg~~~~v~~~~-------lk~GavVIDvGi 231 (296)
T PRK14188 201 RADILVAAVGRPEMVKGDW-------IKPGATVIDVGI 231 (296)
T ss_pred cCCEEEEecCChhhcchhe-------ecCCCEEEEcCC
Confidence 7999999998655433322 789998886543
No 314
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=97.24 E-value=0.00024 Score=76.96 Aligned_cols=110 Identities=14% Similarity=0.115 Sum_probs=70.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (725)
++|||||.|.||+.+|..+..-|++|.+||+.... . + .... ..++ +.+++
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~--~---------------~-----------~~~~-~~~L~ell~~ 167 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD--R---------------G-----------DEGD-FRSLDELVQE 167 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc--c---------------c-----------cccc-cCCHHHHHhh
Confidence 68999999999999999999999999999974321 0 0 0001 1234 45689
Q ss_pred CCEEEEeccCChH---HHHHHH-HHHHHhCCCCeEEEecCCC--CChHHHhcccC-CCCcEEEEecC
Q 004891 388 VDMVIEAVIESVP---LKQKIF-SELEKACPPHCILATNTST--IDLNIVGEKTS-SQDRIIGAHFF 447 (725)
Q Consensus 388 aDlVIeavpe~~~---~k~~v~-~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~-~~~r~ig~h~~ 447 (725)
||+|+.++|-..+ -...++ ++....++++++++..+=+ +.-..+.+.+. .+..-.++..|
T Consensus 168 sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~ 234 (378)
T PRK15438 168 ADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVW 234 (378)
T ss_pred CCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecC
Confidence 9999999984432 123334 4566778999998743323 33334545443 23334455544
No 315
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=97.24 E-value=0.004 Score=71.86 Aligned_cols=105 Identities=17% Similarity=0.199 Sum_probs=73.7
Q ss_pred cCcEEEEEeCC-C-----CCCCCC----------HHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccC
Q 004891 12 NDGVAIITLIN-P-----PVNALA----------IPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG 75 (725)
Q Consensus 12 ~~~v~~i~l~~-p-----~~Nal~----------~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~ 75 (725)
++++.+|-++. + +.+.+. .-.+.++.++++.+.+|+.|++|||.-.+ +.|+++..+.
T Consensus 41 ~~~~L~l~~~gg~i~e~~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~A~~D~~IkgIvL~i~~---~~g~~~~~~~---- 113 (584)
T TIGR00705 41 SSGALLLDLPVGDVTDQSPRVSLQGTLLGNPKGRAISLFDIVNAIRQAADDRRIEGLVFDLSN---FSGWDSPHLV---- 113 (584)
T ss_pred CCeEEEEECCCCcccCcCCCCchhhhhccCCCcCCcCHHHHHHHHHHHhcCCCceEEEEEccC---CCCCCHHHHH----
Confidence 56788888873 3 123221 23578999999999999999999998642 1233332221
Q ss_pred CCcccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCc
Q 004891 76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLP 134 (725)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~p 134 (725)
.+.+.+ +.+....|||||..++.+ -+|+.|+.+||.+++.+.+.+++.
T Consensus 114 ---------ei~~ai-~~fk~sgKpVvA~~~~~~-s~~YylAs~AD~I~~~p~G~v~~~ 161 (584)
T TIGR00705 114 ---------EIGSAL-SEFKDSGKPVYAYGTNYS-QGQYYLASFADEIILNPMGSVDLH 161 (584)
T ss_pred ---------HHHHHH-HHHHhcCCeEEEEEcccc-chhhhhhhhCCEEEECCCceEEee
Confidence 122334 346678899999888765 789999999999999998877553
No 316
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.24 E-value=0.0076 Score=62.62 Aligned_cols=194 Identities=13% Similarity=0.090 Sum_probs=121.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcc----
Q 004891 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS---- 383 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~---- 383 (725)
...|+.||++.||..++.+.+.+|+.|.+|+|+..+++..+++-. +| ..+....+++
T Consensus 6 ~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flanea--------k~-----------~~i~ga~S~ed~v~ 66 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEA--------KG-----------TKIIGAYSLEDFVS 66 (487)
T ss_pred ccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhh--------cC-----------CcccCCCCHHHHHH
Confidence 467999999999999999999999999999999999887654211 11 0122233332
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-CCChHHHh-c-ccCCCCcEEEEecC---CCCCCCCeee
Q 004891 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-TIDLNIVG-E-KTSSQDRIIGAHFF---SPAHVMPLLE 457 (725)
Q Consensus 384 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~~~~~~l~-~-~~~~~~r~ig~h~~---~p~~~~~lve 457 (725)
.++.--.||..|... .....++++|.+++.++.||++... .++-+... . .....--|+|+-.- ..++.+| .
T Consensus 67 klk~PR~iillvkAG-~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP--S 143 (487)
T KOG2653|consen 67 KLKKPRVIILLVKAG-APVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP--S 143 (487)
T ss_pred hcCCCcEEEEEeeCC-CcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC--c
Confidence 245566777666422 2345678899999999888886443 33333221 2 22233346665542 1112222 1
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCC-----e--eEEEcC-Ccchhh----hhhh---HHHHHHHHHHHHc--CCCHHHHHH
Q 004891 458 IVRTERTSAQVILDLMTVGKIIKK-----V--PVVVGN-CTGFAV----NRAF---FPYSQSARLLVSL--GVDVFRIDS 520 (725)
Q Consensus 458 ii~~~~t~~e~~~~~~~l~~~lGk-----~--~v~v~d-~~Gfi~----nRl~---~a~~~Ea~~l~~~--Gv~~~dID~ 520 (725)
++||. ++++-..+++++..+.. . -.++++ ..|-.+ |-+= +.++.|+..++.. |++-++|-.
T Consensus 144 lMpGg--~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~ 221 (487)
T KOG2653|consen 144 LMPGG--SKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAE 221 (487)
T ss_pred cCCCC--ChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 44554 78888888888876532 2 244554 344333 4442 4667799999987 578888888
Q ss_pred HHHhc
Q 004891 521 AIRSF 525 (725)
Q Consensus 521 ~~~~~ 525 (725)
++..+
T Consensus 222 vF~~W 226 (487)
T KOG2653|consen 222 VFDDW 226 (487)
T ss_pred HHHhh
Confidence 87433
No 317
>PRK04148 hypothetical protein; Provisional
Probab=97.24 E-value=0.0032 Score=57.62 Aligned_cols=94 Identities=17% Similarity=0.133 Sum_probs=66.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (725)
+||.+||+| -|.++|..|++.|++|++.|++++.++.+.+. +. . ...+.+ +..+.+.-+++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-----------~~-~-----~v~dDl-f~p~~~~y~~a 78 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-----------GL-N-----AFVDDL-FNPNLEIYKNA 78 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----------CC-e-----EEECcC-CCCCHHHHhcC
Confidence 579999999 89999999999999999999999987776431 10 0 000001 12233556899
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (725)
Q Consensus 389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (725)
|+|..+-| +.-.+.-+-++.+.+..+.+|..-+
T Consensus 79 ~liysirp--p~el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 79 KLIYSIRP--PRDLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred CEEEEeCC--CHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 99999887 4444566677888888888876433
No 318
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=97.22 E-value=0.0003 Score=74.29 Aligned_cols=97 Identities=28% Similarity=0.328 Sum_probs=63.7
Q ss_pred EEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCCCE
Q 004891 313 VIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM 390 (725)
Q Consensus 313 VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDl 390 (725)
|||+|.+|+++|..++..+. +++++|++++.++.....+.+....... . -.+. ..+++++++||+
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~-~-----------~~i~-~~~~~~~~daDi 67 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPT-P-----------KKIR-SGDYSDCKDADL 67 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCC-C-----------eEEe-cCCHHHHCCCCE
Confidence 69999999999999998887 7999999987765443333322110000 0 1222 356789999999
Q ss_pred EEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891 391 VIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT 423 (725)
Q Consensus 391 VIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (725)
||.+.-. +..+.+++..++.++. |+++++..|
T Consensus 68 vVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvs 113 (299)
T TIGR01771 68 VVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFLVAT 113 (299)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeC
Confidence 9998732 3345556666777764 566555433
No 319
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=97.20 E-value=0.0026 Score=61.63 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=47.4
Q ss_pred eEEEEcCCCCcHHHH--HHHHHC----CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-
Q 004891 310 KVAVIGGGLMGSGIA--TAHILN----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (725)
Q Consensus 310 kIaVIG~G~mG~~iA--~~l~~~----G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~- 382 (725)
||+|||+|..-.+.- ..+.+. +-+++++|+|+++++....-.+... +....+ -++..++|.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~----~~~~~~--------~~v~~ttd~~ 68 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMV----EEAGAD--------LKVEATTDRR 68 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHH----HHCTTS--------SEEEEESSHH
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHH----HhcCCC--------eEEEEeCCHH
Confidence 799999999876633 222322 3489999999999887654333332 221111 246667887
Q ss_pred ccccCCCEEEEec
Q 004891 383 SEFKDVDMVIEAV 395 (725)
Q Consensus 383 ~~l~~aDlVIeav 395 (725)
+++++||+||.++
T Consensus 69 eAl~gADfVi~~i 81 (183)
T PF02056_consen 69 EALEGADFVINQI 81 (183)
T ss_dssp HHHTTESEEEE--
T ss_pred HHhCCCCEEEEEe
Confidence 7899999999886
No 320
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.19 E-value=0.00058 Score=63.29 Aligned_cols=75 Identities=19% Similarity=0.202 Sum_probs=52.8
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCc-EEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891 308 VRKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~G~~-V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (725)
-++|.|||+|-||.+++..|+..|.+ |++++|+.++++...+.+ ....+ .....++. +.+
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~--------~~~~~----------~~~~~~~~~~~~ 73 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF--------GGVNI----------EAIPLEDLEEAL 73 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH--------TGCSE----------EEEEGGGHCHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc--------Ccccc----------ceeeHHHHHHHH
Confidence 36899999999999999999999996 999999999877654321 00000 01112233 457
Q ss_pred cCCCEEEEeccCChH
Q 004891 386 KDVDMVIEAVIESVP 400 (725)
Q Consensus 386 ~~aDlVIeavpe~~~ 400 (725)
.++|+||.|.|-...
T Consensus 74 ~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 74 QEADIVINATPSGMP 88 (135)
T ss_dssp HTESEEEE-SSTTST
T ss_pred hhCCeEEEecCCCCc
Confidence 889999999875443
No 321
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=97.18 E-value=0.0056 Score=61.96 Aligned_cols=142 Identities=16% Similarity=0.151 Sum_probs=85.0
Q ss_pred CCCHHHHHHHHHHHHHH-hcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHH--HHHhhCCCcEEE
Q 004891 27 ALAIPIVAGLKDKFEEA-TSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV--NLIEDCKKPIVA 103 (725)
Q Consensus 27 al~~~~~~~l~~~l~~~-~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~kp~Ia 103 (725)
.++.+-...+...+... +++..+-+|.|-=.++ |-.|..-++. -+......++. ......+.|+|+
T Consensus 44 ~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG-~~~g~~aE~~----------G~~~a~A~l~~a~a~a~~~~vP~Is 112 (238)
T TIGR03134 44 EVGLDEALALAQAVLDVIEADDKRPIVVLVDTPS-QAYGRREELL----------GINQALAHLAKALALARLAGHPVIG 112 (238)
T ss_pred cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC-CCCCHHHHHH----------HHHHHHHHHHHHHHHhhcCCCCEEE
Confidence 67877777788888775 4556666666653322 3333222111 11122222220 224456699999
Q ss_pred EEcccccchhh-HHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcC--CCCCHHHHHHcCCc
Q 004891 104 AVEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLS--KSITSEEGWKLGLI 180 (725)
Q Consensus 104 av~G~a~GgG~-~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g--~~~~a~eA~~~Glv 180 (725)
.|-|.++|||+ .+.+.+|.++|.+++.+ +.++.-+++..+-+-. ..+.++.-+= ...+++.+.+.|+|
T Consensus 113 vI~g~a~ggg~lamg~~ad~v~Alp~A~i-------~vm~~e~aa~I~~~~~--~~~~e~a~~~~~~a~~~~~~~~~G~v 183 (238)
T TIGR03134 113 LIYGKAISGAFLAHGLQADRIIALPGAMV-------HVMDLESMARVTKRSV--EELEALAKSSPVFAPGIENFVKLGGV 183 (238)
T ss_pred EEeCCccHHHHHHHccCcCeEEEcCCcEE-------EecCHHHHHHHHccCH--hHHHHHHHhhhhhccCHHHHHhCCCc
Confidence 99999998876 44445888887766654 5555555554444433 3344443322 34577889999999
Q ss_pred ceecCcch
Q 004891 181 DAVVTSEE 188 (725)
Q Consensus 181 ~~vv~~~~ 188 (725)
|+|+++.+
T Consensus 184 d~vi~~~~ 191 (238)
T TIGR03134 184 HALLDVAD 191 (238)
T ss_pred cEEeCCCC
Confidence 99997554
No 322
>PTZ00325 malate dehydrogenase; Provisional
Probab=97.12 E-value=0.00049 Score=73.16 Aligned_cols=34 Identities=26% Similarity=0.296 Sum_probs=30.1
Q ss_pred CcceEEEEcC-CCCcHHHHHHHHHCC--CcEEEEeCC
Q 004891 307 GVRKVAVIGG-GLMGSGIATAHILNN--IYVVLKEVN 340 (725)
Q Consensus 307 ~~~kIaVIG~-G~mG~~iA~~l~~~G--~~V~~~d~~ 340 (725)
+|+||+|||+ |.+|+.+|..++..+ .+++++|++
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~ 43 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV 43 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC
Confidence 5679999999 999999999999665 489999993
No 323
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0075 Score=65.14 Aligned_cols=153 Identities=23% Similarity=0.278 Sum_probs=105.0
Q ss_pred cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEE-cCCCCCcCCCCchhhhhccCCCcccccchhHHHHH
Q 004891 12 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLT-GNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (725)
Q Consensus 12 ~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (725)
+..|.++.++. .+++...+.+.++++.++++.. .+|||. -.++.+ .....+++
T Consensus 25 ~~~v~vi~i~g----~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldTPGGl---------------------~~sm~~iv 78 (436)
T COG1030 25 EKKVYVIEIDG----AIDPASADYLQRALQSAEEENA-AAVVLELDTPGGL---------------------LDSMRQIV 78 (436)
T ss_pred CCeEEEEEecC----ccCHHHHHHHHHHHHHHHhCCC-cEEEEEecCCCch---------------------HHHHHHHH
Confidence 34677777754 5999999999999999998753 344442 222111 12233566
Q ss_pred HHHHhhCCCcEEEEEc---ccccchhhHHhhhcCEEEeeCCceEeCcccccCC--CCCchh--hchHhhh------h--C
Q 004891 91 VNLIEDCKKPIVAAVE---GLALGGGLELAMGCHARIAAPKTQLGLPELTLGV--IPGFGG--TQRLPRL------V--G 155 (725)
Q Consensus 91 ~~~l~~~~kp~Iaav~---G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl--~p~~g~--~~~l~r~------v--G 155 (725)
++|.+++.||+..|. +.|..+|..++++||+..|++.+.+|-...-.+- .+..-. ...+..+ = -
T Consensus 79 -~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN 157 (436)
T COG1030 79 -RAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRN 157 (436)
T ss_pred -HHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCC
Confidence 779999999888883 4699999999999999999999999765443222 111111 1112111 1 2
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecC-cchHHH
Q 004891 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVT-SEELLK 191 (725)
Q Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~-~~~l~~ 191 (725)
...|.+++.....++++||++.|++|-+.. ..|+..
T Consensus 158 ~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~~~ell~ 194 (436)
T COG1030 158 PTWAERFVTENLSLTAEEALRQGVIDLIARDLNELLK 194 (436)
T ss_pred hHHHHHHhhhccCCChhHHHhcCccccccCCHHHHHH
Confidence 366778999999999999999999998873 334433
No 324
>PRK10949 protease 4; Provisional
Probab=97.11 E-value=0.0038 Score=72.08 Aligned_cols=105 Identities=17% Similarity=0.179 Sum_probs=70.7
Q ss_pred cCcEEEEEeCCC-----C-CCCCC---------------HHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhh
Q 004891 12 NDGVAIITLINP-----P-VNALA---------------IPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70 (725)
Q Consensus 12 ~~~v~~i~l~~p-----~-~Nal~---------------~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~ 70 (725)
++++.+|.++.+ + .|.++ .-.+.++.++++.+.+|+.|++|||.-.+.. |.....+
T Consensus 55 ~~~vL~ldl~G~lve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~div~~i~~Aa~D~rIkgivL~i~s~g---G~~~a~~ 131 (618)
T PRK10949 55 SRGALLLDISGVIVDKPSSSNKLSQLGRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVLDLKNFA---GADQPSM 131 (618)
T ss_pred CCeEEEEECCCcccCCCCCCCcHHHHhhhhcccCCCccccccHHHHHHHHHHHhcCCCceEEEEEeCCCC---CccHHHH
Confidence 567888888643 1 23222 1335689999999999999999999864321 1221111
Q ss_pred hhccCCCcccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCc
Q 004891 71 QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLP 134 (725)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~p 134 (725)
+.+...+ ..+....|||||. ...+.-+++-||.+||.+++.+.+.+++.
T Consensus 132 -------------~eI~~ai-~~fk~sGKpVvA~-~~~~~s~~YyLASaAD~I~l~P~G~v~~~ 180 (618)
T PRK10949 132 -------------QYIGKAL-REFRDSGKPVYAV-GDSYSQGQYYLASFANKIYLSPQGVVDLH 180 (618)
T ss_pred -------------HHHHHHH-HHHHHhCCeEEEE-ecCccchhhhhhhhCCEEEECCCceEEEe
Confidence 1122334 3467788999985 44445679999999999999988877543
No 325
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.09 E-value=0.0016 Score=71.43 Aligned_cols=86 Identities=17% Similarity=0.152 Sum_probs=60.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (725)
++|+|+|+|.+|..+|..+...|.+|+++|+++.+++.+.. .|. ......+.++++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~-----------~G~-------------~~~~~~e~v~~a 258 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM-----------EGY-------------EVMTMEEAVKEG 258 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh-----------cCC-------------EEccHHHHHcCC
Confidence 58999999999999999999999999999999988766532 121 001111456789
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEec
Q 004891 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATN 422 (725)
Q Consensus 389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ 422 (725)
|+||+|......+. ......++++.+++..
T Consensus 259 DVVI~atG~~~~i~----~~~l~~mk~Ggilvnv 288 (413)
T cd00401 259 DIFVTTTGNKDIIT----GEHFEQMKDGAIVCNI 288 (413)
T ss_pred CEEEECCCCHHHHH----HHHHhcCCCCcEEEEe
Confidence 99999986322222 2345567888887643
No 326
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.06 E-value=0.0011 Score=68.66 Aligned_cols=70 Identities=14% Similarity=0.225 Sum_probs=54.3
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (725)
Q Consensus 309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (725)
++|+|||. |.||.++|..|.++|+.|++|..... ++ +.++
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~--------------------------------------~l~~~~~ 200 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTR--------------------------------------NLAEVAR 200 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCC--------------------------------------CHHHHHh
Confidence 68999999 99999999999999999999942211 11 3467
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (725)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (725)
+||+||.|++..-.++.. ++++++++++.+
T Consensus 201 ~ADIVI~avg~~~~v~~~-------~ik~GavVIDvg 230 (284)
T PRK14179 201 KADILVVAIGRGHFVTKE-------FVKEGAVVIDVG 230 (284)
T ss_pred hCCEEEEecCccccCCHH-------HccCCcEEEEec
Confidence 899999999855554443 278999988654
No 327
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=97.06 E-value=0.0012 Score=70.48 Aligned_cols=101 Identities=17% Similarity=0.153 Sum_probs=63.0
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCC-------cEEEEeCChHH--HHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccc
Q 004891 310 KVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV 379 (725)
Q Consensus 310 kIaVIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~e~--~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~ 379 (725)
||+|||+ |.+|+++|..++..|. +++++|++++. ++.....+.+ ... .....+..+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d-------------~~~-~~~~~~~~~ 66 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMD-------------CAF-PLLDGVVPT 66 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhc-------------ccc-hhcCceecc
Confidence 6999999 9999999999998655 59999996542 2111000100 000 011223333
Q ss_pred -cCcccccCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891 380 -LDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS 424 (725)
Q Consensus 380 -~~~~~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (725)
++++++++||+||.+.-- +..+.+++..+|.++.+++++++..|.
T Consensus 67 ~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsN 126 (324)
T TIGR01758 67 HDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGN 126 (324)
T ss_pred CChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 346899999999987621 233455666678887667777765443
No 328
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=97.03 E-value=0.0013 Score=70.05 Aligned_cols=102 Identities=16% Similarity=0.088 Sum_probs=71.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (725)
+++||||.|.+|..+|+.+.--|.+|..||+++.. +... . .......-.+.+++|
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~-~~~~------------~------------~~~~y~~l~ell~~s 201 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNP-EAEK------------E------------LGARYVDLDELLAES 201 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCCh-HHHh------------h------------cCceeccHHHHHHhC
Confidence 78999999999999999999778999999998741 1100 0 011222212668999
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-C--CChHHHhcccC
Q 004891 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTS 436 (725)
Q Consensus 389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~ 436 (725)
|+|+..+|-..+...-+=.+..+.++++++++ |++ + +....+.+.+.
T Consensus 202 Dii~l~~Plt~~T~hLin~~~l~~mk~ga~lV-NtaRG~~VDe~ALi~AL~ 251 (324)
T COG1052 202 DIISLHCPLTPETRHLINAEELAKMKPGAILV-NTARGGLVDEQALIDALK 251 (324)
T ss_pred CEEEEeCCCChHHhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 99999999777755555567778899999885 565 3 33334444443
No 329
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=97.02 E-value=0.0038 Score=69.09 Aligned_cols=100 Identities=21% Similarity=0.270 Sum_probs=65.4
Q ss_pred ceEEEEcCCCC-cHHHHHHHHHC-----CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc
Q 004891 309 RKVAVIGGGLM-GSGIATAHILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (725)
Q Consensus 309 ~kIaVIG~G~m-G~~iA~~l~~~-----G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (725)
.||+|||+|.- ...+...|++. +-+|+++|+++++++....-. .+..+....+ -++..|+|.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~----~~~~~~~g~~--------~~v~~ttD~ 68 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIA----KRYVEEVGAD--------IKFEKTMDL 68 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHH----HHHHHhhCCC--------eEEEEeCCH
Confidence 48999999873 33444555543 458999999999987743322 2222221111 246677787
Q ss_pred -ccccCCCEEEEecc----------------------------------CChHHHHHHHHHHHHhCCCCeEEEe
Q 004891 383 -SEFKDVDMVIEAVI----------------------------------ESVPLKQKIFSELEKACPPHCILAT 421 (725)
Q Consensus 383 -~~l~~aDlVIeavp----------------------------------e~~~~k~~v~~~l~~~~~~~~ii~s 421 (725)
+++++||+||.++- -+..+..++.+++.+++ |+++++.
T Consensus 69 ~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~-P~a~lin 141 (425)
T cd05197 69 EDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLS-PDAWYLN 141 (425)
T ss_pred HHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhC-CCcEEEe
Confidence 88999999998862 13446667778888876 5666653
No 330
>PLN02306 hydroxypyruvate reductase
Probab=97.01 E-value=0.0013 Score=71.72 Aligned_cols=127 Identities=19% Similarity=0.179 Sum_probs=74.6
Q ss_pred ceEEEEcCCCCcHHHHHHHH-HCCCcEEEEeCChHH-HHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891 309 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~-~~G~~V~~~d~~~e~-~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (725)
++|||||.|.+|+.+|..+. .-|.+|..||+.... .+...+... ......+... .......++ +.+
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~---~~l~~~~~~~--------~~~~~~~~L~ell 234 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYG---QFLKANGEQP--------VTWKRASSMEEVL 234 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhc---cccccccccc--------ccccccCCHHHHH
Confidence 68999999999999999986 569999999997642 111000000 0000000000 011112345 567
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-C--CChHHHhcccCC-CCcEEEEecC
Q 004891 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTSS-QDRIIGAHFF 447 (725)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~~-~~r~ig~h~~ 447 (725)
+.||+|+.++|-..+...-+=.+..+.++++++++ |++ + +.-..+.+.+.. +-...++.-|
T Consensus 235 ~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lI-N~aRG~lVDe~AL~~AL~sg~i~gAaLDVf 299 (386)
T PLN02306 235 READVISLHPVLDKTTYHLINKERLALMKKEAVLV-NASRGPVIDEVALVEHLKANPMFRVGLDVF 299 (386)
T ss_pred hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHHhCCeeEEEEeCC
Confidence 99999999999766554444456778899999886 444 3 333345455432 2233444444
No 331
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.99 E-value=0.0023 Score=68.29 Aligned_cols=92 Identities=21% Similarity=0.157 Sum_probs=58.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC-CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (725)
++|+|||+|.||..++..+...| .+|+++|+++++.+...+.+ |. .....++. +.+.
T Consensus 179 ~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~----------g~-----------~~~~~~~~~~~l~ 237 (311)
T cd05213 179 KKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL----------GG-----------NAVPLDELLELLN 237 (311)
T ss_pred CEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc----------CC-----------eEEeHHHHHHHHh
Confidence 68999999999999999999865 68999999998765543211 10 00001122 4567
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhC-CCCeEEEecC
Q 004891 387 DVDMVIEAVIESVPLKQKIFSELEKAC-PPHCILATNT 423 (725)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~-~~~~ii~s~t 423 (725)
++|+||.|++.+.. ..++..+.+.. ..+.++++.+
T Consensus 238 ~aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viDla 273 (311)
T cd05213 238 EADVVISATGAPHY--AKIVERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred cCCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEEeC
Confidence 89999999985544 33344433222 2455665543
No 332
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=96.98 E-value=0.05 Score=56.85 Aligned_cols=96 Identities=19% Similarity=0.282 Sum_probs=63.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCC----CceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCc
Q 004891 25 VNALAIPIVAGLKDKFEEATSRD----DVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKP 100 (725)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~~~----~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 100 (725)
--+++....+.+..+++.+.++. .+-+|.|.-.|+ +.+.+-.. . ...+.+ .+..+ ..+... .|
T Consensus 81 GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGG-----aRlqEg~~----~-L~~~a~-i~~~~-~~ls~~-VP 147 (301)
T PRK07189 81 GGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGG-----VRLQEANA----G-LAAIAE-IMRAI-VDLRAA-VP 147 (301)
T ss_pred CcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCC-----cCccchHH----H-HHHHHH-HHHHH-HHHhCC-CC
Confidence 47888888999999999887654 256677654332 23322110 0 000111 11222 124444 99
Q ss_pred EEEEEccc--ccchhhHHhhhcCEEEeeCCceEeC
Q 004891 101 IVAAVEGL--ALGGGLELAMGCHARIAAPKTQLGL 133 (725)
Q Consensus 101 ~Iaav~G~--a~GgG~~lalacD~~ia~~~a~~~~ 133 (725)
+|+++.|. |+||+...+.+||++||++++++++
T Consensus 148 ~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igl 182 (301)
T PRK07189 148 VIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGL 182 (301)
T ss_pred EEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEec
Confidence 99999999 9999999999999999999888876
No 333
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.98 E-value=0.0017 Score=71.33 Aligned_cols=87 Identities=22% Similarity=0.190 Sum_probs=61.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (725)
++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+.. .| ....+-.+.++++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~-----------~G-------------~~v~~l~eal~~a 268 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM-----------DG-------------FRVMTMEEAAELG 268 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh-----------cC-------------CEecCHHHHHhCC
Confidence 68999999999999999999999999999999877543321 11 1111111456789
Q ss_pred CEEEEeccCChHHHHHHHH-HHHHhCCCCeEEEecCC
Q 004891 389 DMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTS 424 (725)
Q Consensus 389 DlVIeavpe~~~~k~~v~~-~l~~~~~~~~ii~s~tS 424 (725)
|+||+|... ..++. +....++++++++....
T Consensus 269 DVVI~aTG~-----~~vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 269 DIFVTATGN-----KDVITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred CEEEECCCC-----HHHHHHHHHhcCCCCCEEEEcCC
Confidence 999998742 12343 45666889998865433
No 334
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=96.98 E-value=0.002 Score=69.09 Aligned_cols=93 Identities=10% Similarity=-0.001 Sum_probs=61.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHH--CCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891 309 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~--~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (725)
++++|||+|.||...+..+.. ...+|.+||+++++.+...+.+++ .+. .+...++. +++
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~-------~g~-----------~v~~~~~~~eav 190 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASD-------YEV-----------PVRAATDPREAV 190 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------hCC-----------cEEEeCCHHHHh
Confidence 679999999999997766654 356899999999998765543321 110 12334444 678
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004891 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (725)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 425 (725)
++||+||.|+|.... ++. .+.++|++.|....|.
T Consensus 191 ~~aDiVitaT~s~~P----~~~--~~~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 191 EGCDILVTTTPSRKP----VVK--ADWVSEGTHINAIGAD 224 (325)
T ss_pred ccCCEEEEecCCCCc----Eec--HHHcCCCCEEEecCCC
Confidence 999999999975432 221 2346788877654443
No 335
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.97 E-value=0.0018 Score=70.75 Aligned_cols=86 Identities=23% Similarity=0.184 Sum_probs=60.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (725)
++|+|+|.|.+|..+|+.+...|.+|+++|+++.+...+. ..|. ...+..+.++++
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~-----------~~G~-------------~v~~leeal~~a 251 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAA-----------MDGF-------------RVMTMEEAAKIG 251 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH-----------hcCC-------------EeCCHHHHHhcC
Confidence 6899999999999999999999999999999987643332 1121 111111456789
Q ss_pred CEEEEeccCChHHHHHHHH-HHHHhCCCCeEEEecC
Q 004891 389 DMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNT 423 (725)
Q Consensus 389 DlVIeavpe~~~~k~~v~~-~l~~~~~~~~ii~s~t 423 (725)
|+||++... ..++. +....++++++++..+
T Consensus 252 DVVItaTG~-----~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 252 DIFITATGN-----KDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred CEEEECCCC-----HHHHHHHHHhcCCCCcEEEEEC
Confidence 999998753 22332 3556688999886433
No 336
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=96.96 E-value=0.017 Score=60.99 Aligned_cols=165 Identities=12% Similarity=0.011 Sum_probs=89.2
Q ss_pred CCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCC-CCHHHHHHhhcCcccccCcccccCCCEEEEecc
Q 004891 318 LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDYSEFKDVDMVIEAVI 396 (725)
Q Consensus 318 ~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~l~~aDlVIeavp 396 (725)
.||+.+|..|+++|++|++++|+ +..+... +.|. +....-......+..+++++.+..+|+||.|++
T Consensus 1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i~-----------~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vK 68 (293)
T TIGR00745 1 AVGSLYGAYLARAGHDVTLLARG-EQLEALN-----------QEGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVK 68 (293)
T ss_pred CchHHHHHHHHhCCCcEEEEecH-HHHHHHH-----------HCCcEEEecCCcEEEcccccccChhhcCCCCEEEEecc
Confidence 37999999999999999999997 4444322 1121 000000000002233445555778999999998
Q ss_pred CChHHHHHHHHHHHHhCCCCeEEEecCCCCChHH-HhcccCCCCcEEEE-ecCCCCCCCCe-ee------EecCCC-CCH
Q 004891 397 ESVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKTSSQDRIIGA-HFFSPAHVMPL-LE------IVRTER-TSA 466 (725)
Q Consensus 397 e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~-l~~~~~~~~r~ig~-h~~~p~~~~~l-ve------ii~~~~-t~~ 466 (725)
..-...+++.+.+.+.++++|++...++...+ +...+. ..++++. -++......|. ++ +.-|.. .+.
T Consensus 69 --s~~~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~-~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~ 145 (293)
T TIGR00745 69 --AYQTEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLP-ARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGEN 145 (293)
T ss_pred --chhHHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhC-ccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCch
Confidence 33456778889999999888887777765443 334333 2233322 11111111111 11 111111 112
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCcchhhhhh
Q 004891 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRA 497 (725)
Q Consensus 467 e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl 497 (725)
+..+.+..++...|.......|..+.+...+
T Consensus 146 ~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl 176 (293)
T TIGR00745 146 EAVEALAELLNEAGIPAELHGDILAAIWKKL 176 (293)
T ss_pred HHHHHHHHHHHhCCCCCEecchHHHHHHHHH
Confidence 4556666677766655555556444444433
No 337
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=96.95 E-value=0.0057 Score=62.61 Aligned_cols=144 Identities=18% Similarity=0.172 Sum_probs=87.1
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHH-HHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~-~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (725)
-+||+|||.|.-|.+-|.+|..+|.+|++--+.... .+++. +.| ....+-.++++
T Consensus 18 gK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~-----------~dG-------------f~V~~v~ea~k 73 (338)
T COG0059 18 GKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAK-----------EDG-------------FKVYTVEEAAK 73 (338)
T ss_pred CCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHH-----------hcC-------------CEeecHHHHhh
Confidence 369999999999999999999999998876554333 23322 222 33233337889
Q ss_pred CCCEEEEeccCChHHHHHHHH-HHHHhCCCCeEEEecCCCCChHHHhcccCCCC--cEEEEecCCCCC----------CC
Q 004891 387 DVDMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTSTIDLNIVGEKTSSQD--RIIGAHFFSPAH----------VM 453 (725)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~-~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~--r~ig~h~~~p~~----------~~ 453 (725)
.+|+|+.-+|+.. -.+++. +|.+.++.+..+.- +.++.+..- ....|. .++=+-|-.|-+ ..
T Consensus 74 ~ADvim~L~PDe~--q~~vy~~~I~p~Lk~G~aL~F-aHGfNihf~--~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~Gv 148 (338)
T COG0059 74 RADVVMILLPDEQ--QKEVYEKEIAPNLKEGAALGF-AHGFNIHFG--LIVPPKDVDVIMVAPKGPGHLVRREYKEGFGV 148 (338)
T ss_pred cCCEEEEeCchhh--HHHHHHHHhhhhhcCCceEEe-ccccceecc--eecCCccCcEEEEcCCCCcHHHHHHHHccCCc
Confidence 9999999999444 347776 89999999987753 334433211 111121 111121212211 11
Q ss_pred CeeeEecCCCCCHHHHHHHHHHHHHcCC
Q 004891 454 PLLEIVRTERTSAQVILDLMTVGKIIKK 481 (725)
Q Consensus 454 ~lveii~~~~t~~e~~~~~~~l~~~lGk 481 (725)
|.+-.+. ...+..+.+.+..+.+.+|.
T Consensus 149 P~LiAV~-qD~sG~a~~~Ala~AkgiGg 175 (338)
T COG0059 149 PALIAVH-QDASGKALDIALAYAKGIGG 175 (338)
T ss_pred eeEEEEE-eCCCchHHHHHHHHHHhcCC
Confidence 2222222 33356678888888888884
No 338
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=96.94 E-value=0.0012 Score=68.93 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=36.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (725)
++|.|+|+|.+|.+++..|+..|++|+++||++++++...+
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~ 158 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAE 158 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 57999999999999999999999999999999887765543
No 339
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.90 E-value=0.0015 Score=70.56 Aligned_cols=78 Identities=27% Similarity=0.262 Sum_probs=55.2
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCC-CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccccc--Cc-c
Q 004891 308 VRKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL--DY-S 383 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~--~~-~ 383 (725)
|+||.|||+|.+|+.+|..|++.| .+|++-||+.++++++.+.... .++..+ +...+ .+ +
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~---------~v~~~~-------vD~~d~~al~~ 64 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG---------KVEALQ-------VDAADVDALVA 64 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc---------cceeEE-------ecccChHHHHH
Confidence 578999999999999999999999 8999999999998887542111 111000 00011 11 4
Q ss_pred cccCCCEEEEeccCChHH
Q 004891 384 EFKDVDMVIEAVIESVPL 401 (725)
Q Consensus 384 ~l~~aDlVIeavpe~~~~ 401 (725)
.+++.|+||.|+|.....
T Consensus 65 li~~~d~VIn~~p~~~~~ 82 (389)
T COG1748 65 LIKDFDLVINAAPPFVDL 82 (389)
T ss_pred HHhcCCEEEEeCCchhhH
Confidence 568889999999954443
No 340
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=96.89 E-value=0.004 Score=68.87 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=48.8
Q ss_pred ceEEEEcCCCCcH-HHHHHHHHC-----CCcEEEEeCC-hHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccC
Q 004891 309 RKVAVIGGGLMGS-GIATAHILN-----NIYVVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD 381 (725)
Q Consensus 309 ~kIaVIG~G~mG~-~iA~~l~~~-----G~~V~~~d~~-~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 381 (725)
.||+|||+|..-+ .+...|++. +-+|+++|++ +++++....-.++ ..+....+ -.+..++|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~----~~~~~~~~--------~~v~~t~d 68 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKR----MVKKAGLP--------IKVHLTTD 68 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHH----HHHhhCCC--------eEEEEeCC
Confidence 4899999988633 344555542 3589999999 7887664332222 22221110 13666777
Q ss_pred c-ccccCCCEEEEec
Q 004891 382 Y-SEFKDVDMVIEAV 395 (725)
Q Consensus 382 ~-~~l~~aDlVIeav 395 (725)
. +++.+||+||.++
T Consensus 69 ~~~al~gadfVi~~~ 83 (419)
T cd05296 69 RREALEGADFVFTQI 83 (419)
T ss_pred HHHHhCCCCEEEEEE
Confidence 7 7899999999887
No 341
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.89 E-value=0.0016 Score=65.33 Aligned_cols=32 Identities=31% Similarity=0.463 Sum_probs=30.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 340 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 340 (725)
.+|.|||+|.+|+.+|..|++.|. +++++|.+
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 579999999999999999999998 59999988
No 342
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.89 E-value=0.0041 Score=56.44 Aligned_cols=99 Identities=21% Similarity=0.198 Sum_probs=59.3
Q ss_pred eEEEEcC-CCCcHHHHHHHHHC-CCcEEEE-eCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccc-
Q 004891 310 KVAVIGG-GLMGSGIATAHILN-NIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF- 385 (725)
Q Consensus 310 kIaVIG~-G~mG~~iA~~l~~~-G~~V~~~-d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l- 385 (725)
||+|||+ |.+|..++..+... +++++.+ +++.+..+.... ..+.+. ..+....+.+.+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~----------~~~~~~--------~~~~~~~~~~~~~ 62 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSE----------AGPHLK--------GEVVLELEPEDFE 62 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHH----------HCcccc--------cccccccccCChh
Confidence 6899995 99999999999984 8887766 654322222110 000010 000001111222
Q ss_pred -cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh
Q 004891 386 -KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 428 (725)
Q Consensus 386 -~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~ 428 (725)
.++|+||.|+|.+... ++...+...+.+++++++.+|++..
T Consensus 63 ~~~~DvV~~~~~~~~~~--~~~~~~~~~~~~g~~viD~s~~~~~ 104 (122)
T smart00859 63 ELAVDIVFLALPHGVSK--EIAPLLPKAAEAGVKVIDLSSAFRM 104 (122)
T ss_pred hcCCCEEEEcCCcHHHH--HHHHHHHhhhcCCCEEEECCccccC
Confidence 4899999999965443 4444444556889999988887664
No 343
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=96.88 E-value=0.022 Score=56.85 Aligned_cols=143 Identities=20% Similarity=0.222 Sum_probs=92.7
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceE--EEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEE
Q 004891 28 LAIPIVAGLKDKFEEATSRDDVKA--IVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (725)
Q Consensus 28 l~~~~~~~l~~~l~~~~~~~~v~~--vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav 105 (725)
.+.++.+.+...|-.++.++..+- +-|.+.|+...+|-=+... .....++ +.|...+-||...+
T Consensus 49 ~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v-------------~~glaIy-D~m~~ik~~V~Tv~ 114 (222)
T PRK12552 49 VGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFE-------------TEAFAIC-DTMRYIKPPVHTIC 114 (222)
T ss_pred hhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCcccccccccc-------------ccHHHHH-HHHHhcCCCeEEEE
Confidence 344488888888888865543332 3335555554444111000 1123455 66888888999999
Q ss_pred cccccchhhHHhhhcCE--EEeeCCceEeCcccccCCCCCchhhc-----------------hHhhhhC--HHHHHHHHH
Q 004891 106 EGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQ-----------------RLPRLVG--LSKAIEMML 164 (725)
Q Consensus 106 ~G~a~GgG~~lalacD~--~ia~~~a~~~~pe~~~Gl~p~~g~~~-----------------~l~r~vG--~~~a~~l~l 164 (725)
-|.|.+.+.-|++++|- |++.+++++-+....-|.. + -.+. .+...-| .....+++-
T Consensus 115 ~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~-G-~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d~~ 192 (222)
T PRK12552 115 IGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR-G-QATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKDTD 192 (222)
T ss_pred EeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc-c-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhc
Confidence 99999999999999995 9999999998776654431 1 1111 1111122 233445555
Q ss_pred cCCCCCHHHHHHcCCcceecCc
Q 004891 165 LSKSITSEEGWKLGLIDAVVTS 186 (725)
Q Consensus 165 ~g~~~~a~eA~~~Glv~~vv~~ 186 (725)
....++|+||++.||||+|+.+
T Consensus 193 rd~wmsA~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 193 RMFYLTPQEAKEYGLIDRVLES 214 (222)
T ss_pred CCCcCCHHHHHHcCCCcEEecc
Confidence 6678899999999999999854
No 344
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=96.86 E-value=0.0061 Score=67.65 Aligned_cols=75 Identities=23% Similarity=0.257 Sum_probs=49.7
Q ss_pred ceEEEEcCCCC-cHHHHHHHHHC-----CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc
Q 004891 309 RKVAVIGGGLM-GSGIATAHILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (725)
Q Consensus 309 ~kIaVIG~G~m-G~~iA~~l~~~-----G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (725)
+||+|||+|.. +..+...+++. +-+|+++|+++++++.... ...+..++...+ -++..|+|.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~----l~~~~~~~~g~~--------~~v~~Ttdr 68 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAE----AVKILFKENYPE--------IKFVYTTDP 68 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHH----HHHHHHHhhCCC--------eEEEEECCH
Confidence 58999999874 22344445433 4589999999999877433 223333321111 246677787
Q ss_pred -ccccCCCEEEEec
Q 004891 383 -SEFKDVDMVIEAV 395 (725)
Q Consensus 383 -~~l~~aDlVIeav 395 (725)
+++++||+||.++
T Consensus 69 ~eAl~gADfVi~~i 82 (437)
T cd05298 69 EEAFTDADFVFAQI 82 (437)
T ss_pred HHHhCCCCEEEEEe
Confidence 8899999999887
No 345
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.84 E-value=0.0049 Score=60.44 Aligned_cols=91 Identities=19% Similarity=0.223 Sum_probs=62.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHC--CC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891 310 KVAVIGGGLMGSGIATAHILN--NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (725)
Q Consensus 310 kIaVIG~G~mG~~iA~~l~~~--G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (725)
||++||+|.+|..+...+... .+ -|.+||++.+++..+.+. .+. ...+++ +.+
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~----------------------~~~-~~~s~ide~~ 58 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEAS----------------------VGR-RCVSDIDELI 58 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhh----------------------cCC-CccccHHHHh
Confidence 799999999999999877643 24 578999999987654321 111 123555 445
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 004891 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427 (725)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~ 427 (725)
++.|+|+||.. .+..+++.-++.+. .-++||+| ++.+.
T Consensus 59 ~~~DlvVEaAS--~~Av~e~~~~~L~~-g~d~iV~S-VGALa 96 (255)
T COG1712 59 AEVDLVVEAAS--PEAVREYVPKILKA-GIDVIVMS-VGALA 96 (255)
T ss_pred hccceeeeeCC--HHHHHHHhHHHHhc-CCCEEEEe-chhcc
Confidence 99999999997 66666666665442 35677765 44554
No 346
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=96.81 E-value=0.0036 Score=66.04 Aligned_cols=98 Identities=10% Similarity=0.025 Sum_probs=68.8
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (725)
Q Consensus 307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (725)
.-++|+|+|+|.+|..+|+.|...|..+.-+.|++..-+...+. + ....+..+.+.
T Consensus 161 ~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~-----------~-------------~~~~d~~~~~~ 216 (336)
T KOG0069|consen 161 EGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEY-----------Y-------------AEFVDIEELLA 216 (336)
T ss_pred cCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHh-----------c-------------ccccCHHHHHh
Confidence 34799999999999999999999994455556655543332211 0 00122236689
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh
Q 004891 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 428 (725)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~ 428 (725)
++|+|+.|.|-..+...-+=+++...++++++|+...=+-.+
T Consensus 217 ~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~ii 258 (336)
T KOG0069|consen 217 NSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAII 258 (336)
T ss_pred hCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccc
Confidence 999999999977776666667888999999988754444333
No 347
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.80 E-value=0.0022 Score=70.92 Aligned_cols=88 Identities=24% Similarity=0.307 Sum_probs=61.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (725)
++|+|||.|.+|..+|..+...|.+|+++|+++.....+. ..| .. ..++ +.++.
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~-----------~~G-------------~~-~~~leell~~ 309 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAA-----------MEG-------------YQ-VVTLEDVVET 309 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHH-----------hcC-------------ce-eccHHHHHhc
Confidence 6899999999999999999999999999999987643321 111 11 1122 45788
Q ss_pred CCEEEEeccCChHHHHHHH-HHHHHhCCCCeEEEecCCCCC
Q 004891 388 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTID 427 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~-~~l~~~~~~~~ii~s~tS~~~ 427 (725)
+|+||.|... ..++ .+..+.++++++++ |++...
T Consensus 310 ADIVI~atGt-----~~iI~~e~~~~MKpGAiLI-NvGr~d 344 (476)
T PTZ00075 310 ADIFVTATGN-----KDIITLEHMRRMKNNAIVG-NIGHFD 344 (476)
T ss_pred CCEEEECCCc-----ccccCHHHHhccCCCcEEE-EcCCCc
Confidence 9999998642 2334 34556678999886 445443
No 348
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.77 E-value=0.0016 Score=68.31 Aligned_cols=72 Identities=15% Similarity=0.192 Sum_probs=51.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (725)
++|.|||+|.+|++++..|+..|. +|+++||+.++++...+.+.... .. ..+....+. +.+.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~------~~----------~~~~~~~~~~~~~~ 191 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF------PA----------ARATAGSDLAAALA 191 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC------CC----------eEEEeccchHhhhC
Confidence 689999999999999999999998 79999999988776544332110 00 001111222 3567
Q ss_pred CCCEEEEecc
Q 004891 387 DVDMVIEAVI 396 (725)
Q Consensus 387 ~aDlVIeavp 396 (725)
++|+||.|+|
T Consensus 192 ~aDiVInaTp 201 (284)
T PRK12549 192 AADGLVHATP 201 (284)
T ss_pred CCCEEEECCc
Confidence 8999999987
No 349
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=96.75 E-value=0.0058 Score=61.36 Aligned_cols=106 Identities=25% Similarity=0.365 Sum_probs=70.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccc
Q 004891 308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 385 (725)
..||.|||.|..|.+.|..++..|. ++.++|.++++++-..=.++ .|.. =-...++....|+..-
T Consensus 20 ~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLq--------H~s~-----f~~~~~V~~~~Dy~~s 86 (332)
T KOG1495|consen 20 HNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQ--------HGSA-----FLSTPNVVASKDYSVS 86 (332)
T ss_pred CceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhc--------cccc-----cccCCceEecCccccc
Confidence 5799999999999999999999987 89999999987654321111 1100 0011356667788888
Q ss_pred cCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 004891 386 KDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTID 427 (725)
Q Consensus 386 ~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~ 427 (725)
+++++||..+.- +.++.+.++.++.++ +|++++...+....
T Consensus 87 a~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~y-Spd~~llvvSNPVD 141 (332)
T KOG1495|consen 87 ANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKY-SPDCILLVVSNPVD 141 (332)
T ss_pred CCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecCchH
Confidence 999999988731 233444444455554 56776654444333
No 350
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.74 E-value=0.0052 Score=62.67 Aligned_cols=85 Identities=15% Similarity=0.087 Sum_probs=55.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC---CcE-EEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccc
Q 004891 309 RKVAVIGGGLMGSGIATAHILNN---IYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G---~~V-~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (725)
.||+|||+|.||..++..+.+.+ +++ .+++++++..+...+ .....++++.
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~-------------------------~~~~~~~l~~ 57 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAG-------------------------RVALLDGLPG 57 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhc-------------------------cCcccCCHHH
Confidence 68999999999999999987643 443 467887755443211 1223445544
Q ss_pred --ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEe
Q 004891 385 --FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421 (725)
Q Consensus 385 --l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s 421 (725)
...+|+|+||.. .+..++.-..+.+. ..+.++.|
T Consensus 58 ll~~~~DlVVE~A~--~~av~e~~~~iL~~-g~dlvv~S 93 (267)
T PRK13301 58 LLAWRPDLVVEAAG--QQAIAEHAEGCLTA-GLDMIICS 93 (267)
T ss_pred HhhcCCCEEEECCC--HHHHHHHHHHHHhc-CCCEEEEC
Confidence 377999999997 66666666655432 23444444
No 351
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.74 E-value=0.0084 Score=60.67 Aligned_cols=93 Identities=20% Similarity=0.224 Sum_probs=60.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-----c
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-----S 383 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-----~ 383 (725)
+++.|||+|.+|.++|..|.+.|++|+++|.+++.+++.... .+...+-.|. .++. .
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~---~~~~~~v~gd---------------~t~~~~L~~a 62 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD---ELDTHVVIGD---------------ATDEDVLEEA 62 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh---hcceEEEEec---------------CCCHHHHHhc
Confidence 479999999999999999999999999999999997764320 0010010110 1111 2
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHHh-CCCCeEEEe
Q 004891 384 EFKDVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILAT 421 (725)
Q Consensus 384 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~-~~~~~ii~s 421 (725)
-+.++|.+|-+..+|..- .++..+... .....+++-
T Consensus 63 gi~~aD~vva~t~~d~~N--~i~~~la~~~~gv~~viar 99 (225)
T COG0569 63 GIDDADAVVAATGNDEVN--SVLALLALKEFGVPRVIAR 99 (225)
T ss_pred CCCcCCEEEEeeCCCHHH--HHHHHHHHHhcCCCcEEEE
Confidence 368899999998755442 444444332 444455543
No 352
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.66 E-value=0.0051 Score=66.02 Aligned_cols=93 Identities=15% Similarity=0.158 Sum_probs=62.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-CCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891 309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~-~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (725)
++|+|||+|.+|...+..++. .+. +|.+||+++++.++..+.+...+ + + .+...++. +.+
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~------~-~----------~~~~~~~~~~~~ 190 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF------N-T----------EIYVVNSADEAI 190 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc------C-C----------cEEEeCCHHHHH
Confidence 579999999999999887754 454 89999999998877654432110 1 0 12223444 567
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004891 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (725)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 425 (725)
+++|+||.|.|... .++. ..+++++.|.+..|.
T Consensus 191 ~~aDiVi~aT~s~~----p~i~---~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 191 EEADIIVTVTNAKT----PVFS---EKLKKGVHINAVGSF 223 (325)
T ss_pred hcCCEEEEccCCCC----cchH---HhcCCCcEEEecCCC
Confidence 89999999998442 2333 456788877655443
No 353
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.63 E-value=0.04 Score=57.45 Aligned_cols=158 Identities=15% Similarity=0.116 Sum_probs=88.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-CCCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccc-
Q 004891 309 RKVAVIGGGLMGSGIATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF- 385 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~-~G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l- 385 (725)
-+||+||+|-||+.|+...++ .|++|+ +-|++.+.+.++.++....-...++....+.-...-..+.+..|+|.+.+
T Consensus 18 iRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i~ 97 (438)
T COG4091 18 IRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELII 97 (438)
T ss_pred eEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhhh
Confidence 479999999999999987775 699876 55888888777655321111111121111211122223456666666443
Q ss_pred --cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-----CCChHHHhcccCCCCcEEEEecCCCCCCCCeeeE
Q 004891 386 --KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-----TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEI 458 (725)
Q Consensus 386 --~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-----~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lvei 458 (725)
...|+||++.--..---+-.+..| .....+|..|.- +..+.+.+... |+- .
T Consensus 98 ~~~~IdvIIdATG~p~vGA~~~l~Ai---~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~-------Gvi------------y 155 (438)
T COG4091 98 ANDLIDVIIDATGVPEVGAKIALEAI---LHGKHLVMMNVEADVTIGPILKQQADAA-------GVI------------Y 155 (438)
T ss_pred cCCcceEEEEcCCCcchhhHhHHHHH---hcCCeEEEEEeeeceeecHHHHHHHhhc-------CeE------------E
Confidence 456888988642222222333333 334445554432 11122222211 221 2
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004891 459 VRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (725)
Q Consensus 459 i~~~~t~~e~~~~~~~l~~~lGk~~v~v~d 488 (725)
..+..-.|...-.+.+|.+.+|..++.++.
T Consensus 156 S~~~GDeP~~~mEL~efa~a~G~evv~aGK 185 (438)
T COG4091 156 SGGAGDEPSSCMELYEFASALGFEVVSAGK 185 (438)
T ss_pred eccCCCCcHHHHHHHHHHHhcCCeEEeccC
Confidence 223344677788888999999999999863
No 354
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.62 E-value=0.0048 Score=61.01 Aligned_cols=41 Identities=27% Similarity=0.303 Sum_probs=36.2
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 004891 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (725)
Q Consensus 309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (725)
++|.|+|+ |.+|..++..|++.|++|++++|+.++++...+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~ 70 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAAD 70 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 58999996 999999999999999999999999887766543
No 355
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.61 E-value=0.0031 Score=67.50 Aligned_cols=101 Identities=18% Similarity=0.176 Sum_probs=63.6
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCC-------CcEEEEeCChHH--HHHHHHHHHHHHHhhHHcCCCCHHHHH-HhhcCcc
Q 004891 309 RKVAVIGG-GLMGSGIATAHILNN-------IYVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKAN-NALKMLK 377 (725)
Q Consensus 309 ~kIaVIG~-G~mG~~iA~~l~~~G-------~~V~~~d~~~e~--~~~~~~~i~~~l~~~~~~g~~~~~~~~-~~~~~i~ 377 (725)
-||+|+|+ |.+|+.++..|+..+ .+|+++|+++.. ++.. .++-.+.. .....+.
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~---------------~~Dl~d~~~~~~~~~~ 67 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGV---------------VMELQDCAFPLLKSVV 67 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccce---------------eeehhhccccccCCce
Confidence 47999999 999999999998854 589999997531 2110 00000000 0012333
Q ss_pred cccCc-ccccCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891 378 GVLDY-SEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS 424 (725)
Q Consensus 378 ~~~~~-~~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (725)
...++ +++++||+||.+.-- +..+.+++..++.++++++++++..|.
T Consensus 68 ~~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 68 ATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred ecCCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 34553 889999999988621 223446666778888777777665443
No 356
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.60 E-value=0.0092 Score=70.51 Aligned_cols=95 Identities=8% Similarity=0.066 Sum_probs=74.9
Q ss_pred EEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhcccCC-CCcEEEEecCCCCC------------CCCe
Q 004891 391 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSS-QDRIIGAHFFSPAH------------VMPL 455 (725)
Q Consensus 391 VIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~-~~r~ig~h~~~p~~------------~~~l 455 (725)
||.|+| +....++++++.++++++++|++.+|+.. +..+...+.. ..+|+|.||..... .+..
T Consensus 1 vila~P--v~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAP--VAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcC--HHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCe
Confidence 689999 89899999999999999999987777643 2344344432 25799999965442 3345
Q ss_pred eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004891 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (725)
Q Consensus 456 veii~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 487 (725)
.-+++.+.+++++++.++++++.+|..++.+.
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~ 110 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAARADVRAMS 110 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 66888888999999999999999999998884
No 357
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=96.60 E-value=0.024 Score=55.30 Aligned_cols=142 Identities=23% Similarity=0.278 Sum_probs=87.9
Q ss_pred EEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004891 18 ITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (725)
Q Consensus 18 i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (725)
|.|..| ++..+...+...+-.++.++..+-|.| -+.|+...+| ...+ +.|.
T Consensus 30 I~l~g~----I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG----------------------~AIy-dtm~ 82 (200)
T COG0740 30 IFLGGE----IEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAG----------------------LAIY-DTMQ 82 (200)
T ss_pred EEEeee----echHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchh----------------------HHHH-HHHH
Confidence 445444 444455555566666655544444444 4444333332 2445 6688
Q ss_pred hCCCcEEEEEcccccchhhHHhhhcCEE--EeeCCceEeCcccccCCCCCchhhc-------------hH----hhhhCH
Q 004891 96 DCKKPIVAAVEGLALGGGLELAMGCHAR--IAAPKTQLGLPELTLGVIPGFGGTQ-------------RL----PRLVGL 156 (725)
Q Consensus 96 ~~~kp~Iaav~G~a~GgG~~lalacD~~--ia~~~a~~~~pe~~~Gl~p~~g~~~-------------~l----~r~vG~ 156 (725)
..+.||...+-|.|..-|.-|++|+|.. ++.++|++-..... |.+-|.. +. ++ ...-|.
T Consensus 83 ~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~G~a-~Di~i~A~ei~~~~~~l~~i~a~~TGq 160 (200)
T COG0740 83 FIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQGQA-SDIEIHAREILKIKERLNRIYAEHTGQ 160 (200)
T ss_pred hcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCccCH-HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8999999999999999999999999985 88888877654444 3222111 10 00 111121
Q ss_pred --HHHHHHHHcCCCCCHHHHHHcCCcceecCcch
Q 004891 157 --SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188 (725)
Q Consensus 157 --~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 188 (725)
..-...+-....++|+||++.||||+|....+
T Consensus 161 ~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~ 194 (200)
T COG0740 161 TLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESRE 194 (200)
T ss_pred CHHHHHHhhcccccCCHHHHHHcCCcceeccccc
Confidence 22223344567789999999999999986543
No 358
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.59 E-value=0.0029 Score=66.37 Aligned_cols=71 Identities=17% Similarity=0.204 Sum_probs=51.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC-CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccC-ccccc
Q 004891 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD-YSEFK 386 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~l~ 386 (725)
++|.|+|+|.+|.+++..|+..| .+|++++|+.++++...+.+.. .+ .+....+ .+.+.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~-------~~------------~~~~~~~~~~~~~ 184 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGA-------LG------------KAELDLELQEELA 184 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh-------cc------------ceeecccchhccc
Confidence 57999999999999999999999 6999999999887665433211 00 0111111 14568
Q ss_pred CCCEEEEeccCC
Q 004891 387 DVDMVIEAVIES 398 (725)
Q Consensus 387 ~aDlVIeavpe~ 398 (725)
++|+||.|+|-.
T Consensus 185 ~~DivInaTp~g 196 (278)
T PRK00258 185 DFDLIINATSAG 196 (278)
T ss_pred cCCEEEECCcCC
Confidence 899999999843
No 359
>PLN02494 adenosylhomocysteinase
Probab=96.58 E-value=0.0035 Score=69.13 Aligned_cols=87 Identities=15% Similarity=0.235 Sum_probs=60.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (725)
++|+|+|.|.+|..+|+.+...|.+|+++|+++.+...+. ..|. ... ++ +.++.
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~-----------~~G~-------------~vv-~leEal~~ 309 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQAL-----------MEGY-------------QVL-TLEDVVSE 309 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHH-----------hcCC-------------eec-cHHHHHhh
Confidence 6899999999999999999999999999999987643332 1111 001 12 45678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (725)
+|+||++.... . .+..+..+.++++++++....
T Consensus 310 ADVVI~tTGt~-~---vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 310 ADIFVTTTGNK-D---IIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred CCEEEECCCCc-c---chHHHHHhcCCCCCEEEEcCC
Confidence 99999876522 1 223455567899998875443
No 360
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.56 E-value=0.0058 Score=58.68 Aligned_cols=76 Identities=22% Similarity=0.224 Sum_probs=55.2
Q ss_pred ceEEEEcCCCC-cHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891 309 RKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~m-G~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (725)
++|.|||+|.| |..+|..|.+.|.+|++.+++.+.+. +.+.+
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~-------------------------------------~~l~~ 87 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLK-------------------------------------EHTKQ 87 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHH-------------------------------------HHHhh
Confidence 68999999987 88899999999999999998853321 24678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 428 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~ 428 (725)
||+||.|++-.--+..+ .++++.++++.+....+
T Consensus 88 aDiVIsat~~~~ii~~~-------~~~~~~viIDla~prdv 121 (168)
T cd01080 88 ADIVIVAVGKPGLVKGD-------MVKPGAVVIDVGINRVP 121 (168)
T ss_pred CCEEEEcCCCCceecHH-------HccCCeEEEEccCCCcc
Confidence 99999999743323322 24566777765554433
No 361
>PRK07340 ornithine cyclodeaminase; Validated
Probab=96.55 E-value=0.0066 Score=64.43 Aligned_cols=91 Identities=18% Similarity=0.174 Sum_probs=61.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-CCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891 309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~-~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (725)
++|+|||+|.+|...+..+.. .+. +|.+|++++++.++..+++.. .+. .+. ..+. +++
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~-------~~~-----------~~~-~~~~~~av 186 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARA-------LGP-----------TAE-PLDGEAIP 186 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------eeE-ECCHHHHh
Confidence 579999999999999999975 454 799999999987776544321 110 011 2333 578
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004891 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (725)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 425 (725)
++||+||.|.|....+ +.. .++|++.|....|.
T Consensus 187 ~~aDiVitaT~s~~Pl----~~~---~~~~g~hi~~iGs~ 219 (304)
T PRK07340 187 EAVDLVVTATTSRTPV----YPE---AARAGRLVVAVGAF 219 (304)
T ss_pred hcCCEEEEccCCCCce----eCc---cCCCCCEEEecCCC
Confidence 8999999999854432 322 25788766554443
No 362
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=96.53 E-value=0.018 Score=60.86 Aligned_cols=124 Identities=19% Similarity=0.189 Sum_probs=74.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CCcEE-EEeCCh-HHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cc
Q 004891 309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNS-EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~-e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (725)
.||+|||+|.||...+..+.+. +++++ ++|+++ +.+.. ..+ .. .+.+. +.
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~-------------~~~------------v~-~~~d~~e~ 57 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT-------------ETP------------VY-AVADDEKH 57 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh-------------cCC------------cc-ccCCHHHh
Confidence 5899999999999999998765 78877 579985 32211 001 11 12222 44
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCC
Q 004891 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 464 (725)
Q Consensus 385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t 464 (725)
+.++|+|+.|.|..... + .+.+.+..+.=++++. +++. .
T Consensus 58 l~~iDVViIctPs~th~--~---~~~~~L~aG~NVV~s~-------------------------~~h~-----------~ 96 (324)
T TIGR01921 58 LDDVDVLILCMGSATDI--P---EQAPYFAQFANTVDSF-------------------------DNHR-----------D 96 (324)
T ss_pred ccCCCEEEEcCCCccCH--H---HHHHHHHcCCCEEECC-------------------------Cccc-----------C
Confidence 57899999999865552 2 2222222322122210 0111 1
Q ss_pred CHHHHHHHHHHHHHcCCeeEEE-cCCcchhh-hhhhH
Q 004891 465 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAV-NRAFF 499 (725)
Q Consensus 465 ~~e~~~~~~~l~~~lGk~~v~v-~d~~Gfi~-nRl~~ 499 (725)
.++..+.+...++.-|+..++. +=.|||.. ||++.
T Consensus 97 ~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~~~ 133 (324)
T TIGR01921 97 IPRHRQVMDAAAKAAGNVSVISTGWDPGMFSINRVYG 133 (324)
T ss_pred CHHHHHHHHHHHHHcCCEEEEECCCCcChHHHHHHHH
Confidence 3577788888888776665544 77788655 78754
No 363
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.52 E-value=0.0072 Score=64.88 Aligned_cols=73 Identities=15% Similarity=0.173 Sum_probs=52.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-CCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891 309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~-~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (725)
++++|||+|.+|...+..++. .+. +|++|+|++++++...+++...+ + + .+...++. +.+
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~------g-~----------~v~~~~~~~~av 192 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL------G-I----------DVTAATDPRAAM 192 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc------C-c----------eEEEeCCHHHHh
Confidence 579999999999999999973 664 69999999999877654432110 1 0 12223444 567
Q ss_pred cCCCEEEEeccCC
Q 004891 386 KDVDMVIEAVIES 398 (725)
Q Consensus 386 ~~aDlVIeavpe~ 398 (725)
++||+||.|.|..
T Consensus 193 ~~aDiVvtaT~s~ 205 (326)
T TIGR02992 193 SGADIIVTTTPSE 205 (326)
T ss_pred ccCCEEEEecCCC
Confidence 8999999998743
No 364
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.47 E-value=0.0041 Score=69.10 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=34.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC-CcEEEEeCChHHHHHH
Q 004891 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKG 347 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~ 347 (725)
++|+|||+|.||..++..|...| .+|++++++.++++..
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~l 220 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDL 220 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 68999999999999999999999 6899999998876543
No 365
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.35 E-value=0.0077 Score=54.91 Aligned_cols=104 Identities=19% Similarity=0.165 Sum_probs=60.0
Q ss_pred ceEEEEcC-CCCcHHHHHHHHH-CCCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cc
Q 004891 309 RKVAVIGG-GLMGSGIATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (725)
Q Consensus 309 ~kIaVIG~-G~mG~~iA~~l~~-~G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (725)
.||+|+|+ |.||+.++..+.+ .|+++. ++|++++.... +.+. .....+ ...+..++++ +.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g--~d~g----~~~~~~----------~~~~~v~~~l~~~ 64 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVG--KDVG----ELAGIG----------PLGVPVTDDLEEL 64 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTT--SBCH----HHCTSS----------T-SSBEBS-HHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCccccc--chhh----hhhCcC----------CcccccchhHHHh
Confidence 38999999 9999999999998 788854 67887621100 0000 000000 0123345555 45
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhc
Q 004891 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGE 433 (725)
Q Consensus 385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~ 433 (725)
+..+|+||+... ++.....++...++ +.-+++.|+++.-.++..
T Consensus 65 ~~~~DVvIDfT~--p~~~~~~~~~~~~~---g~~~ViGTTG~~~~~~~~ 108 (124)
T PF01113_consen 65 LEEADVVIDFTN--PDAVYDNLEYALKH---GVPLVIGTTGFSDEQIDE 108 (124)
T ss_dssp TTH-SEEEEES---HHHHHHHHHHHHHH---T-EEEEE-SSSHHHHHHH
T ss_pred cccCCEEEEcCC--hHHhHHHHHHHHhC---CCCEEEECCCCCHHHHHH
Confidence 677999999873 55555555554443 666677788887655443
No 366
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=96.30 E-value=0.088 Score=59.78 Aligned_cols=165 Identities=12% Similarity=0.115 Sum_probs=103.4
Q ss_pred EEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004891 18 ITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (725)
Q Consensus 18 i~l~~p~--~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (725)
|.-|+|. ..++++.-.+...+.++.+.+. .+-+|.|.-.++ |..|.+-. .........+++ .++.
T Consensus 319 vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs~G-~~~g~~~E----------~~g~~~~~a~~~-~a~~ 385 (512)
T TIGR01117 319 IIANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDVPG-FLPGVNQE----------YGGIIRHGAKVL-YAYS 385 (512)
T ss_pred EEEeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCcC-ccccHHHH----------HHHHHHHHHHHH-HHHH
Confidence 3335664 3679999999999999988753 566777754333 55553321 111122333555 5678
Q ss_pred hCCCcEEEEEcccccchhhHHhh----hcCEEEeeCCceEeCcccccCCCCCchhhchHh-hhhC----HHHHHHHH---
Q 004891 96 DCKKPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLP-RLVG----LSKAIEMM--- 163 (725)
Q Consensus 96 ~~~kp~Iaav~G~a~GgG~~lal----acD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~-r~vG----~~~a~~l~--- 163 (725)
....|.|+.|.|.|+|||+.-+. .+|+++|.+++.+++ .++-+++..+- +.+- ...++...
T Consensus 386 ~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~v-------~~pe~a~~i~~~~~l~~~~~~~~~~~~~~~~ 458 (512)
T TIGR01117 386 EATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAV-------MGPAGAANIIFRKDIKEAKDPAATRKQKIAE 458 (512)
T ss_pred hCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEee-------cCHHHHHHHHhhhhcccccCHHHHHHHHHHH
Confidence 89999999999999888654443 289999888877664 33223222221 1111 11111111
Q ss_pred HcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHh
Q 004891 164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA 202 (725)
Q Consensus 164 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~ 202 (725)
..-+..++..+.+.|+||.|+++.++........+.+..
T Consensus 459 ~~~~~~~~~~~a~~g~vD~VI~P~~tR~~l~~~l~~~~~ 497 (512)
T TIGR01117 459 YREEFANPYKAAARGYVDDVIEPKQTRPKIVNALAMLES 497 (512)
T ss_pred HHHhhcCHHHHHhcCCCCeeEChHHHHHHHHHHHHHHhc
Confidence 122345788999999999999999988877777665443
No 367
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=96.30 E-value=0.03 Score=61.08 Aligned_cols=76 Identities=18% Similarity=0.205 Sum_probs=51.3
Q ss_pred cceEEEEcCCCCcHHHH-HHHHH-----CCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccC
Q 004891 308 VRKVAVIGGGLMGSGIA-TAHIL-----NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD 381 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA-~~l~~-----~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 381 (725)
..||+|||+|..+.+-- ..+.. .+.++.++|+++++++.. ....++.++.-..+ -++..++|
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i----~~~~~~~v~~~g~~--------~kv~~ttd 70 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKII----AILAKKLVEEAGAP--------VKVEATTD 70 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHH----HHHHHHHHHhhCCC--------eEEEEecC
Confidence 46899999998876532 22222 256899999999997732 33344444432221 24666777
Q ss_pred c-ccccCCCEEEEec
Q 004891 382 Y-SEFKDVDMVIEAV 395 (725)
Q Consensus 382 ~-~~l~~aDlVIeav 395 (725)
. +++++||+||.++
T Consensus 71 ~~eAl~gAdfVi~~~ 85 (442)
T COG1486 71 RREALEGADFVITQI 85 (442)
T ss_pred HHHHhcCCCEEEEEE
Confidence 7 8899999999887
No 368
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=96.28 E-value=0.084 Score=59.94 Aligned_cols=127 Identities=22% Similarity=0.204 Sum_probs=85.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCC--CchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEE
Q 004891 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF--DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIV 102 (725)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~--Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 102 (725)
..+++....+.+..+++.+..+ .+-+|.|.- |.|+ ++++-... ...+.... ..+ ..+.. ..|+|
T Consensus 70 gGs~g~~~~~Ki~ra~~~A~~~-~~P~v~l~d-----sgGa~~r~~eg~~~-----l~~~g~i~-~~~-~~~~~-~iP~I 135 (493)
T PF01039_consen 70 GGSVGEVHGEKIARAIELALEN-GLPLVYLVD-----SGGAFLRMQEGVES-----LMGMGRIF-RAI-ARLSG-GIPQI 135 (493)
T ss_dssp GGTBSHHHHHHHHHHHHHHHHH-TEEEEEEEE-----ESSBCGGGGGHHHH-----HHHHHHHH-HHH-HHHHT-TS-EE
T ss_pred cCCCCcccceeeehHHHHHHHc-CCCcEEecc-----ccccccccchhhhh-----hhhhHHHH-HHH-HHHhc-CCCeE
Confidence 4789999999999999988866 455666643 3344 44332211 00111111 222 33555 99999
Q ss_pred EEEcccccchhhHHhhhcCEEEeeCC-ceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHH-------
Q 004891 103 AAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG------- 174 (725)
Q Consensus 103 aav~G~a~GgG~~lalacD~~ia~~~-a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA------- 174 (725)
+++.|+|.|||..++..||++|+.++ +.+++. |+... + ..+|+.++.++.
T Consensus 136 ~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~--------------------GP~vv-~-~~~Ge~~~~~~lgG~~~h~ 193 (493)
T PF01039_consen 136 SVVTGPCTGGGAYLAALSDFVIMVKGTARIFLA--------------------GPRVV-E-SATGEEVDSEELGGADVHA 193 (493)
T ss_dssp EEEESEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------THHHH-H-HHHSSCTSHHHHHBHHHHH
T ss_pred EEEccccccchhhcccccCccccCccceEEEec--------------------ccccc-c-cccCccccchhhhhhhhhc
Confidence 99999999999999999999999987 777643 21211 1 245788888764
Q ss_pred HHcCCcceecCcc
Q 004891 175 WKLGLIDAVVTSE 187 (725)
Q Consensus 175 ~~~Glv~~vv~~~ 187 (725)
...|.+|.+++.+
T Consensus 194 ~~sG~~d~v~~de 206 (493)
T PF01039_consen 194 AKSGVVDYVVDDE 206 (493)
T ss_dssp HTSSSSSEEESSH
T ss_pred ccCCCceEEEech
Confidence 4789999999765
No 369
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.27 E-value=0.028 Score=50.50 Aligned_cols=77 Identities=23% Similarity=0.209 Sum_probs=52.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHC--CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891 310 KVAVIGGGLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (725)
Q Consensus 310 kIaVIG~G~mG~~iA~~l~~~--G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (725)
||+|||+|.+|......+.+. +.+|+ ++|+++++.+...+. -.+...+++ +.+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~-----------------------~~~~~~~~~~~ll 58 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK-----------------------YGIPVYTDLEELL 58 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH-----------------------TTSEEESSHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH-----------------------hcccchhHHHHHH
Confidence 799999999999999888877 45654 889999887765321 112245555 334
Q ss_pred c--CCCEEEEeccCChHHHHHHHHHHHH
Q 004891 386 K--DVDMVIEAVIESVPLKQKIFSELEK 411 (725)
Q Consensus 386 ~--~aDlVIeavpe~~~~k~~v~~~l~~ 411 (725)
+ +.|+|+.|+|... -.++..+..+
T Consensus 59 ~~~~~D~V~I~tp~~~--h~~~~~~~l~ 84 (120)
T PF01408_consen 59 ADEDVDAVIIATPPSS--HAEIAKKALE 84 (120)
T ss_dssp HHTTESEEEEESSGGG--HHHHHHHHHH
T ss_pred HhhcCCEEEEecCCcc--hHHHHHHHHH
Confidence 3 7899999998544 3355544433
No 370
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.26 E-value=0.012 Score=63.38 Aligned_cols=72 Identities=17% Similarity=0.139 Sum_probs=51.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-CC-CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891 309 RKVAVIGGGLMGSGIATAHIL-NN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~-~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (725)
++|+|||+|.+|...+..+.. .+ .+|++|+|+++++++..+.+++.+ + + .+...++. +.+
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~------g-~----------~v~~~~d~~~al 195 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL------G-I----------PVTVARDVHEAV 195 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc------C-c----------eEEEeCCHHHHH
Confidence 579999999999999888875 45 489999999999887654432110 1 0 12223444 567
Q ss_pred cCCCEEEEeccC
Q 004891 386 KDVDMVIEAVIE 397 (725)
Q Consensus 386 ~~aDlVIeavpe 397 (725)
.+||+||.|.|.
T Consensus 196 ~~aDiVi~aT~s 207 (330)
T PRK08291 196 AGADIIVTTTPS 207 (330)
T ss_pred ccCCEEEEeeCC
Confidence 889999998874
No 371
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.25 E-value=0.0055 Score=55.59 Aligned_cols=99 Identities=17% Similarity=0.159 Sum_probs=60.4
Q ss_pred eEEEEc-CCCCcHHHHHHHHHCC-Cc-EEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccccc-Ccccc
Q 004891 310 KVAVIG-GGLMGSGIATAHILNN-IY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DYSEF 385 (725)
Q Consensus 310 kIaVIG-~G~mG~~iA~~l~~~G-~~-V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~l 385 (725)
||+||| .|.+|..+...|.++- ++ +.++.++.+.-..... .... ......+.+.+ +.+.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~--------~~~~--------~~~~~~~~~~~~~~~~~ 64 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSE--------VFPH--------PKGFEDLSVEDADPEEL 64 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHH--------TTGG--------GTTTEEEBEEETSGHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeeh--------hccc--------cccccceeEeecchhHh
Confidence 799999 7999999999999853 34 4456666522111110 0000 00001222222 34567
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 004891 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (725)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 429 (725)
.++|+||.|+| .....++...+ +..++.|+++++.+...
T Consensus 65 ~~~Dvvf~a~~--~~~~~~~~~~~---~~~g~~ViD~s~~~R~~ 103 (121)
T PF01118_consen 65 SDVDVVFLALP--HGASKELAPKL---LKAGIKVIDLSGDFRLD 103 (121)
T ss_dssp TTESEEEE-SC--HHHHHHHHHHH---HHTTSEEEESSSTTTTS
T ss_pred hcCCEEEecCc--hhHHHHHHHHH---hhCCcEEEeCCHHHhCC
Confidence 99999999998 55556666665 45788888988876543
No 372
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.24 E-value=0.011 Score=65.80 Aligned_cols=39 Identities=26% Similarity=0.267 Sum_probs=35.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHH
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKG 347 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~ 347 (725)
++|+|||+|.||..++..+...|. +|+++++++++++..
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~l 222 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEEL 222 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHH
Confidence 689999999999999999999998 799999999876543
No 373
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.23 E-value=0.0082 Score=57.13 Aligned_cols=70 Identities=23% Similarity=0.208 Sum_probs=49.6
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (725)
Q Consensus 309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (725)
+||+|||+ |..|+.|+....+.||+|+.+-||++++... +.+ ..+++...+ .+...+++.+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~-~~~-----~i~q~Difd------------~~~~a~~l~g 62 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR-QGV-----TILQKDIFD------------LTSLASDLAG 62 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc-ccc-----eeecccccC------------hhhhHhhhcC
Confidence 58999998 9999999999999999999999999886541 000 001111111 1111256889
Q ss_pred CCEEEEecc
Q 004891 388 VDMVIEAVI 396 (725)
Q Consensus 388 aDlVIeavp 396 (725)
.|.||.+..
T Consensus 63 ~DaVIsA~~ 71 (211)
T COG2910 63 HDAVISAFG 71 (211)
T ss_pred CceEEEecc
Confidence 999999984
No 374
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.21 E-value=0.0086 Score=65.34 Aligned_cols=39 Identities=26% Similarity=0.358 Sum_probs=35.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (725)
.+|.|||+|.+|...+..+...|.+|+++|+++++++.+
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l 206 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQL 206 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH
Confidence 679999999999999999999999999999998876654
No 375
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.21 E-value=0.0088 Score=67.53 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=51.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (725)
+++.|+|+|.||.+++..|++.|++|+++|+++++++...+.+ .....+ ..+...+.++
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~--------~~~~~~-------------~~~~~~l~~~ 391 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRC--------QGKAFP-------------LESLPELHRI 391 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------ccceec-------------hhHhcccCCC
Confidence 5799999999999999999999999999999988766543211 001011 1122336789
Q ss_pred CEEEEeccCCh
Q 004891 389 DMVIEAVIESV 399 (725)
Q Consensus 389 DlVIeavpe~~ 399 (725)
|+||.|+|...
T Consensus 392 DiVInatP~g~ 402 (477)
T PRK09310 392 DIIINCLPPSV 402 (477)
T ss_pred CEEEEcCCCCC
Confidence 99999998654
No 376
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.16 E-value=0.01 Score=62.36 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=36.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHH
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~ 349 (725)
++|.|||+|-+|++++..|+..|. +|++++|+.++.+...+
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~ 167 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVD 167 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 579999999999999999999997 69999999988766543
No 377
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.15 E-value=0.059 Score=53.56 Aligned_cols=129 Identities=20% Similarity=0.274 Sum_probs=74.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChH-HHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e-~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (725)
++|.|||+|.+|...+..|.++|.+|++++++.. .+.. +...+.+. ...-.-..+.+.+
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~-----------l~~~~~i~---------~~~~~~~~~~l~~ 70 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVK-----------LVEEGKIR---------WKQKEFEPSDIVD 70 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHH-----------HHhCCCEE---------EEecCCChhhcCC
Confidence 6899999999999999999999999999987532 1111 11222111 0000111256789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCC--CCCCeeeEecCCCCC
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTERTS 465 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~--~~~~lveii~~~~t~ 465 (725)
+|+||.|.. +.++...+...- ..+. ++.+....+ . ..|..|. ..+++.-.+.+.+.+
T Consensus 71 adlViaaT~-d~elN~~i~~~a----~~~~-lvn~~d~~~------------~---~~f~~Pa~~~~g~l~iaIsT~G~s 129 (202)
T PRK06718 71 AFLVIAATN-DPRVNEQVKEDL----PENA-LFNVITDAE------------S---GNVVFPSALHRGKLTISVSTDGAS 129 (202)
T ss_pred ceEEEEcCC-CHHHHHHHHHHH----HhCC-cEEECCCCc------------c---CeEEEeeEEEcCCeEEEEECCCCC
Confidence 999988764 555555554332 2333 332222111 1 1232332 334455556666678
Q ss_pred HHHHHHHHHHHHH
Q 004891 466 AQVILDLMTVGKI 478 (725)
Q Consensus 466 ~e~~~~~~~l~~~ 478 (725)
|.....++.-++.
T Consensus 130 P~la~~lr~~ie~ 142 (202)
T PRK06718 130 PKLAKKIRDELEA 142 (202)
T ss_pred hHHHHHHHHHHHH
Confidence 8877777776665
No 378
>PRK05086 malate dehydrogenase; Provisional
Probab=96.12 E-value=0.013 Score=62.46 Aligned_cols=96 Identities=17% Similarity=0.199 Sum_probs=58.6
Q ss_pred ceEEEEcC-CCCcHHHHHHHHH---CCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccc--ccC-
Q 004891 309 RKVAVIGG-GLMGSGIATAHIL---NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG--VLD- 381 (725)
Q Consensus 309 ~kIaVIG~-G~mG~~iA~~l~~---~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~--~~~- 381 (725)
+||+|||+ |.+|.++|..+.. .+++++++|+++.....+.+ + ... .....+.. .++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alD-l--------~~~--------~~~~~i~~~~~~d~ 63 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVD-L--------SHI--------PTAVKIKGFSGEDP 63 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehh-h--------hcC--------CCCceEEEeCCCCH
Confidence 58999999 9999999998855 24689999998542100010 0 000 00011221 234
Q ss_pred cccccCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEec
Q 004891 382 YSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATN 422 (725)
Q Consensus 382 ~~~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ 422 (725)
++++++||+||.|.-. +..+.+++...+.++ .++++++..
T Consensus 64 ~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivv 117 (312)
T PRK05086 64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGII 117 (312)
T ss_pred HHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEc
Confidence 4788999999999842 222555566667776 456665543
No 379
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.09 E-value=0.016 Score=61.41 Aligned_cols=93 Identities=15% Similarity=0.154 Sum_probs=62.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891 309 RKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~-G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (725)
++++|||+|.+|...+..++.- .+ +|.+|+|++++.++..+++++.+ + -.+...++. +++
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~------~-----------~~v~~~~~~~eav 180 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF------G-----------VDIRPVDNAEAAL 180 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHHHH
Confidence 6799999999999998888763 33 79999999999887655443210 1 123334444 678
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (725)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (725)
++||+|+.|.+.... ++. .+.++|++-|....|
T Consensus 181 ~~aDIV~taT~s~~P----~~~--~~~l~pg~hV~aiGs 213 (301)
T PRK06407 181 RDADTITSITNSDTP----IFN--RKYLGDEYHVNLAGS 213 (301)
T ss_pred hcCCEEEEecCCCCc----Eec--HHHcCCCceEEecCC
Confidence 999999998874332 221 124567776654444
No 380
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.06 E-value=0.041 Score=66.96 Aligned_cols=123 Identities=14% Similarity=0.121 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHhCCHh-----HHHHHHHHHhhhhhcCCCCCCCCCCCCCCcceEEEEcCCCCcHHHHHHHHHC-CC
Q 004891 259 GYSGVLKEAKVFKELVMLDT-----SRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILN-NI 332 (725)
Q Consensus 259 ~~~~l~~E~~~~~~~~~s~~-----~~~~i~aF~~~r~~~~~~~~~~~~~~~~~~~kIaVIG~G~mG~~iA~~l~~~-G~ 332 (725)
-++.|......+..+....+ ..+..+.|....+.+....-.........++||+|||+|.||...|..|++. ++
T Consensus 515 d~~~L~~i~~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIlVLGAG~VG~~~a~~La~~~~~ 594 (1042)
T PLN02819 515 DKEVLDQIIDSLTRLANPNEDYISPAREANKIFLKIGKVQQENECNEKAEVTKKSQNVLILGAGRVCRPAAEYLASVKTI 594 (1042)
T ss_pred cHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhcccccccccccccccccCCcEEEECCCHHHHHHHHHHHhCcCc
Confidence 34555555555665554222 2345555554333332111111122334578999999999999999999875 33
Q ss_pred c-------------EEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccc-ccCc----ccccCCCEEEEe
Q 004891 333 Y-------------VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY----SEFKDVDMVIEA 394 (725)
Q Consensus 333 ~-------------V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~----~~l~~aDlVIea 394 (725)
+ |++.|++++.++++.+.+ .+ + ..+.. .+|. +.++++|+||.|
T Consensus 595 ~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~---------~~-~---------~~v~lDv~D~e~L~~~v~~~DaVIsa 655 (1042)
T PLN02819 595 SYYGDDSEEPTDVHVIVASLYLKDAKETVEGI---------EN-A---------EAVQLDVSDSESLLKYVSQVDVVISL 655 (1042)
T ss_pred cccccccccccccEEEEECCCHHHHHHHHHhc---------CC-C---------ceEEeecCCHHHHHHhhcCCCEEEEC
Confidence 4 999999998876643311 01 0 00111 1222 334779999999
Q ss_pred ccCChH
Q 004891 395 VIESVP 400 (725)
Q Consensus 395 vpe~~~ 400 (725)
+|....
T Consensus 656 lP~~~H 661 (1042)
T PLN02819 656 LPASCH 661 (1042)
T ss_pred CCchhh
Confidence 996443
No 381
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.06 E-value=0.01 Score=57.72 Aligned_cols=96 Identities=17% Similarity=0.212 Sum_probs=57.8
Q ss_pred EEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCCC
Q 004891 311 VAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (725)
Q Consensus 311 IaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD 389 (725)
|.|+|+ |.+|..++..|.+.|++|+++-|++++++. ...+ +.+.....+.+.. .+++++||
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-~~~~-----~~~~~d~~d~~~~------------~~al~~~d 62 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-SPGV-----EIIQGDLFDPDSV------------KAALKGAD 62 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-CTTE-----EEEESCTTCHHHH------------HHHHTTSS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-cccc-----ccceeeehhhhhh------------hhhhhhcc
Confidence 689997 999999999999999999999999987554 0000 0000000111000 14578999
Q ss_pred EEEEeccC---ChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891 390 MVIEAVIE---SVPLKQKIFSELEKACPPHCILATNTS 424 (725)
Q Consensus 390 lVIeavpe---~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (725)
.||.+++. +....+.+++.+.+.-.+..+++|..+
T Consensus 63 ~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~~ 100 (183)
T PF13460_consen 63 AVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSSAG 100 (183)
T ss_dssp EEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred hhhhhhhhhcccccccccccccccccccccceeeeccc
Confidence 99999973 344444455544443222334444443
No 382
>PRK06046 alanine dehydrogenase; Validated
Probab=96.04 E-value=0.017 Score=62.04 Aligned_cols=92 Identities=12% Similarity=0.083 Sum_probs=59.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891 309 RKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~-G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (725)
++|+|||+|.+|...+..+... +. .|.+||+++++.++..+.+.+. .+ -.+...++. +.+
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~------~~-----------~~v~~~~~~~~~l 192 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSV------VG-----------CDVTVAEDIEEAC 192 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhh------cC-----------ceEEEeCCHHHHh
Confidence 5799999999999999988743 44 7889999999887765543211 01 012233444 345
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (725)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (725)
+ +|+|+.|.|.... +|. .+.+++++.|.+..|
T Consensus 193 ~-aDiVv~aTps~~P----~~~--~~~l~~g~hV~~iGs 224 (326)
T PRK06046 193 D-CDILVTTTPSRKP----VVK--AEWIKEGTHINAIGA 224 (326)
T ss_pred h-CCEEEEecCCCCc----Eec--HHHcCCCCEEEecCC
Confidence 5 9999999985332 221 124567776654444
No 383
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.02 E-value=0.031 Score=55.65 Aligned_cols=132 Identities=17% Similarity=0.202 Sum_probs=76.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (725)
++|.|||+|.+|..-+..|++.|.+|++++.+... . +..+.+.+.+. .+.-.-..+.+.++
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~--~--------l~~l~~~~~i~---------~~~~~~~~~dl~~~ 70 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELES--E--------LTLLAEQGGIT---------WLARCFDADILEGA 70 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCH--H--------HHHHHHcCCEE---------EEeCCCCHHHhCCc
Confidence 58999999999999999999999999999886541 1 11112222221 01001112457889
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCC--CCCCCeeeEecCCCCCH
Q 004891 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSP--AHVMPLLEIVRTERTSA 466 (725)
Q Consensus 389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p--~~~~~lveii~~~~t~~ 466 (725)
|+||.|. ++.++...++.... ...+++...+.... ..|..| ...+++.-.+...+.+|
T Consensus 71 ~lVi~at-~d~~ln~~i~~~a~----~~~ilvn~~d~~e~---------------~~f~~pa~~~~g~l~iaisT~G~sP 130 (205)
T TIGR01470 71 FLVIAAT-DDEELNRRVAHAAR----ARGVPVNVVDDPEL---------------CSFIFPSIVDRSPVVVAISSGGAAP 130 (205)
T ss_pred EEEEECC-CCHHHHHHHHHHHH----HcCCEEEECCCccc---------------CeEEEeeEEEcCCEEEEEECCCCCc
Confidence 9998774 45666555555433 22333322222111 122233 23345555566666788
Q ss_pred HHHHHHHHHHHHc
Q 004891 467 QVILDLMTVGKII 479 (725)
Q Consensus 467 e~~~~~~~l~~~l 479 (725)
.....++.-++.+
T Consensus 131 ~la~~lr~~ie~~ 143 (205)
T TIGR01470 131 VLARLLRERIETL 143 (205)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777666654
No 384
>PLN00203 glutamyl-tRNA reductase
Probab=96.01 E-value=0.0073 Score=68.40 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=36.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHH
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI 348 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~ 348 (725)
++|+|||+|.||..++..|...|. +|++++++.++++...
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La 307 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALR 307 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHH
Confidence 689999999999999999999997 7999999998876643
No 385
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.93 E-value=0.028 Score=58.14 Aligned_cols=98 Identities=19% Similarity=0.236 Sum_probs=54.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccc-cCc---
Q 004891 309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY--- 382 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~--G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~--- 382 (725)
+||++||.|.+-.+.-....+. |..|+.+|+++++.+.+.+-+...+. +. .++++. .|.
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~--L~-------------~~m~f~~~d~~~~ 186 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG--LS-------------KRMSFITADVLDV 186 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H--H--------------SSEEEEES-GGGG
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc--cc-------------CCeEEEecchhcc
Confidence 5999999999987755544443 45789999999998887643331110 01 122222 121
Q ss_pred -ccccCCCEEEEecc--CChHHHHHHHHHHHHhCCCCeEEEe
Q 004891 383 -SEFKDVDMVIEAVI--ESVPLKQKIFSELEKACPPHCILAT 421 (725)
Q Consensus 383 -~~l~~aDlVIeavp--e~~~~k~~v~~~l~~~~~~~~ii~s 421 (725)
..++++|+|+.|.- -+..-|.+++..|.+++++|++|+.
T Consensus 187 ~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 187 TYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp -GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred ccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEE
Confidence 34688999999863 2344899999999999999998874
No 386
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.87 E-value=0.042 Score=49.15 Aligned_cols=95 Identities=21% Similarity=0.142 Sum_probs=57.6
Q ss_pred EEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCCCE
Q 004891 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM 390 (725)
Q Consensus 311 IaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDl 390 (725)
|.|+|.|.+|..++..|.+.+.+|+++|.+++..+.+.+.. ..+-.|..+..+.- ....+.+|+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~-----~~~i~gd~~~~~~l----------~~a~i~~a~~ 65 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG-----VEVIYGDATDPEVL----------ERAGIEKADA 65 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-----SEEEES-TTSHHHH----------HHTTGGCESE
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc-----cccccccchhhhHH----------hhcCccccCE
Confidence 57999999999999999998779999999999977764311 00001111100000 0034688999
Q ss_pred EEEeccCChHHHHHHHHHHHHhCCCCeEEEe
Q 004891 391 VIEAVIESVPLKQKIFSELEKACPPHCILAT 421 (725)
Q Consensus 391 VIeavpe~~~~k~~v~~~l~~~~~~~~ii~s 421 (725)
||.+.+++ .....+...+.+..+.-.+++-
T Consensus 66 vv~~~~~d-~~n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 66 VVILTDDD-EENLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp EEEESSSH-HHHHHHHHHHHHHTTTSEEEEE
T ss_pred EEEccCCH-HHHHHHHHHHHHHCCCCeEEEE
Confidence 99988755 3333333445444444555543
No 387
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=95.86 E-value=0.025 Score=60.12 Aligned_cols=92 Identities=13% Similarity=0.123 Sum_probs=62.2
Q ss_pred cceEEEEcCCCCcHHHHHHHHHC-C-CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cc
Q 004891 308 VRKVAVIGGGLMGSGIATAHILN-N-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~-G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (725)
...++|||+|.++......+..- + -+|.+|+++++..++...++.+. +. ..+...++. ++
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~-------~~----------~~v~a~~s~~~a 192 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKR-------GG----------EAVGAADSAEEA 192 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhh-------cC----------ccceeccCHHHH
Confidence 46799999999999999888763 3 38999999999988876543321 11 013334444 77
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEec
Q 004891 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 422 (725)
Q Consensus 385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ 422 (725)
+++||+|+.|.|.+..+ +. .+.++|++-|...
T Consensus 193 v~~aDiIvt~T~s~~Pi----l~--~~~l~~G~hI~ai 224 (330)
T COG2423 193 VEGADIVVTATPSTEPV----LK--AEWLKPGTHINAI 224 (330)
T ss_pred hhcCCEEEEecCCCCCe----ec--HhhcCCCcEEEec
Confidence 89999999999744422 11 1345577765443
No 388
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.82 E-value=0.015 Score=57.88 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=30.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 340 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 340 (725)
.||.|||+|.+|+.+|..|++.|. +++++|.+
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 579999999999999999999998 89999987
No 389
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=95.81 E-value=0.23 Score=50.29 Aligned_cols=106 Identities=14% Similarity=0.100 Sum_probs=73.0
Q ss_pred ccCcccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccC----CCCcEEEEecCCCCCCCC
Q 004891 379 VLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS----SQDRIIGAHFFSPAHVMP 454 (725)
Q Consensus 379 ~~~~~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~----~~~r~ig~h~~~p~~~~~ 454 (725)
++|.++++++|++|.-.|..-. .-.+.+++.++++.++|| +||.+++...+...+. ..-.+..+||-.-| .++
T Consensus 133 sDD~EAvk~aei~I~ftPfG~~-t~~Iikki~~~ipEgAII-~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaaVP-gt~ 209 (342)
T PRK00961 133 TDDREAVADADIVITWLPKGGM-QPDIIEKFADDIKEGAIV-THACTIPTTKFAKIFKDLGRDDLNVTSYHPGAVP-EMK 209 (342)
T ss_pred cCcHHHhcCCCEEEEecCCCCC-chHHHHHHHhhCCCCCEE-eccccCCHHHHHHHHHHhCcccCCeeccCCCCCC-CCC
Confidence 4455999999999999985432 236778888999999987 5777887765554432 22345566663322 222
Q ss_pred eeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004891 455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (725)
Q Consensus 455 lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 487 (725)
.-..+.-...++|.++++.++.+..|+.++++.
T Consensus 210 Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~P 242 (342)
T PRK00961 210 GQVYIAEGYADEEAVEKLYEIGKKARGNAFKMP 242 (342)
T ss_pred CceecccccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 111223344689999999999999999999873
No 390
>PRK06823 ornithine cyclodeaminase; Validated
Probab=95.80 E-value=0.034 Score=59.27 Aligned_cols=93 Identities=10% Similarity=0.077 Sum_probs=62.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891 309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~--G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (725)
++++|||+|.++...+..+... --+|.+|++++++.++..+.+++ .+ -.+...++. +++
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~-------~~-----------~~v~~~~~~~~av 190 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQA-------LG-----------FAVNTTLDAAEVA 190 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------cC-----------CcEEEECCHHHHh
Confidence 6799999999999999887753 23899999999998876543221 11 123334444 678
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004891 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (725)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 425 (725)
++||+|+.|.+.... +|. .+.++|++.|....|.
T Consensus 191 ~~ADIV~taT~s~~P----~~~--~~~l~~G~hi~~iGs~ 224 (315)
T PRK06823 191 HAANLIVTTTPSREP----LLQ--AEDIQPGTHITAVGAD 224 (315)
T ss_pred cCCCEEEEecCCCCc----eeC--HHHcCCCcEEEecCCC
Confidence 999999998864332 221 1346788776654443
No 391
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=95.69 E-value=0.027 Score=58.33 Aligned_cols=35 Identities=29% Similarity=0.293 Sum_probs=28.9
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHC-CCcEE-EEeCChHH
Q 004891 309 RKVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVNSEY 343 (725)
Q Consensus 309 ~kIaVIG~-G~mG~~iA~~l~~~-G~~V~-~~d~~~e~ 343 (725)
.||+|+|+ |.||..++..+.+. +++++ ++|++++.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~ 39 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSP 39 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcc
Confidence 58999998 99999999988864 67766 58888765
No 392
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.67 E-value=0.024 Score=59.11 Aligned_cols=42 Identities=14% Similarity=0.129 Sum_probs=37.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHHH
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKT 350 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~ 350 (725)
++|.|+|+|-++.+++..|++.|. +|++++|+.+++++..+.
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~ 169 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADL 169 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Confidence 679999999999999999999995 799999999998776543
No 393
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.65 E-value=0.032 Score=58.02 Aligned_cols=72 Identities=18% Similarity=0.263 Sum_probs=54.3
Q ss_pred ceEEEEcCCC-CcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~-mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (725)
++|.|||.|. +|.++|..|.+.|..|+++++....+. +.+++
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~-------------------------------------~~~~~ 201 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMA-------------------------------------SYLKD 201 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHHhh
Confidence 6899999987 999999999999999999987532211 24678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (725)
||+||.|++-.--+.. +.+++++++++..+
T Consensus 202 ADIVIsAvg~p~~i~~-------~~vk~gavVIDvGi 231 (286)
T PRK14175 202 ADVIVSAVGKPGLVTK-------DVVKEGAVIIDVGN 231 (286)
T ss_pred CCEEEECCCCCcccCH-------HHcCCCcEEEEcCC
Confidence 9999999974322222 24688888887554
No 394
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.63 E-value=0.051 Score=60.56 Aligned_cols=37 Identities=30% Similarity=0.452 Sum_probs=33.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHH
Q 004891 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL 344 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~ 344 (725)
.++|.|||.|.+|.++|..|.+.|++|+++|++++.+
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~ 39 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEAL 39 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence 4689999999999999999999999999999887653
No 395
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=95.62 E-value=0.03 Score=60.98 Aligned_cols=41 Identities=27% Similarity=0.281 Sum_probs=36.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHH
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~ 349 (725)
+||.|||+|-||...|.+|.++|. +|++.+|+.+++....+
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~ 220 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAK 220 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH
Confidence 579999999999999999999994 89999999999877543
No 396
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=95.62 E-value=0.014 Score=64.42 Aligned_cols=68 Identities=19% Similarity=0.180 Sum_probs=49.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (725)
+||.|||+|-||..++..|+..|. ++++++|+.++++...+.+. .+ .....+++ +.+.
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~--------~~------------~~~~~~~l~~~l~ 241 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFR--------NA------------SAHYLSELPQLIK 241 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhc--------CC------------eEecHHHHHHHhc
Confidence 579999999999999999999996 79999999887655432110 01 01111222 5578
Q ss_pred CCCEEEEecc
Q 004891 387 DVDMVIEAVI 396 (725)
Q Consensus 387 ~aDlVIeavp 396 (725)
++|+||.|++
T Consensus 242 ~aDiVI~aT~ 251 (414)
T PRK13940 242 KADIIIAAVN 251 (414)
T ss_pred cCCEEEECcC
Confidence 8999999885
No 397
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=95.60 E-value=0.32 Score=55.30 Aligned_cols=140 Identities=16% Similarity=0.114 Sum_probs=84.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEE
Q 004891 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (725)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa 104 (725)
.-+++....+.+..+++.+.++. +-+|.|.-.|+ +.+.+-.. . ...+...+ .. .....-..|.|++
T Consensus 95 gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSgG-----arm~eg~~----~-l~~~~~~~-~~--~~~~s~~iP~Isv 160 (512)
T TIGR01117 95 GGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSGG-----ARIQEAVD----A-LKGYGDIF-YR--NTIASGVVPQISA 160 (512)
T ss_pred ccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCCC-----CCccccch----h-hhhHHHHH-HH--HHHHcCCCcEEEE
Confidence 47888889999999999887653 55666653332 23321100 0 00111111 11 1123345899999
Q ss_pred EcccccchhhHHhhhcCEEEeeCCc-eEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHH-------HH
Q 004891 105 VEGLALGGGLELAMGCHARIAAPKT-QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------WK 176 (725)
Q Consensus 105 v~G~a~GgG~~lalacD~~ia~~~a-~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA-------~~ 176 (725)
+.|.|.||+......||++|+++++ .+++. |+...+ . .+|+.+++++. ..
T Consensus 161 v~G~~~GG~a~~~al~D~vim~~~~a~i~~a--------------------GP~vv~-~-~~Ge~v~~e~lGGa~~h~~~ 218 (512)
T TIGR01117 161 IMGPCAGGAVYSPALTDFIYMVDNTSQMFIT--------------------GPQVIK-T-VTGEEVTAEQLGGAMAHNSV 218 (512)
T ss_pred EecCCCcHHHHHHHhcCceEEeccceEEEec--------------------ChHHHH-h-hcCcccchhhcchHHHhccc
Confidence 9999999998888899999999864 45431 212111 1 35666666655 25
Q ss_pred cCCcceecCcc-hHHHHHHHHHHHH
Q 004891 177 LGLIDAVVTSE-ELLKVSRLWALDI 200 (725)
Q Consensus 177 ~Glv~~vv~~~-~l~~~a~~~a~~l 200 (725)
.|++|.+++.+ +..+.+.++..-+
T Consensus 219 sGv~d~~~~de~ea~~~~r~~ls~l 243 (512)
T TIGR01117 219 SGVAHFIAEDDDDCIMLIRRLLSFL 243 (512)
T ss_pred cceeEEecCChHHHHHHHHHHHHhC
Confidence 89999998544 4555555554443
No 398
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=95.57 E-value=0.013 Score=62.43 Aligned_cols=93 Identities=18% Similarity=0.171 Sum_probs=53.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-CCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891 309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~-~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (725)
++++|||+|..+..-+..++. .+. +|.+|+|+++++++..+++++ .+ -.+...++. +++
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-------~~-----------~~v~~~~~~~~av 190 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-------LG-----------VPVVAVDSAEEAV 190 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-------CC-----------TCEEEESSHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-------cc-----------ccceeccchhhhc
Confidence 579999999999998887765 344 899999999998876554322 01 123445555 678
Q ss_pred cCCCEEEEeccCCh--HHHHHHHHHHHHhCCCCeEEEecCCC
Q 004891 386 KDVDMVIEAVIESV--PLKQKIFSELEKACPPHCILATNTST 425 (725)
Q Consensus 386 ~~aDlVIeavpe~~--~~k~~v~~~l~~~~~~~~ii~s~tS~ 425 (725)
++||+|+.|.+-.. .+ +. .+.+++++.|....+.
T Consensus 191 ~~aDii~taT~s~~~~P~----~~--~~~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 191 RGADIIVTATPSTTPAPV----FD--AEWLKPGTHINAIGSY 226 (313)
T ss_dssp TTSSEEEE----SSEEES----B---GGGS-TT-EEEE-S-S
T ss_pred ccCCEEEEccCCCCCCcc----cc--HHHcCCCcEEEEecCC
Confidence 99999999987443 21 11 1356788877655543
No 399
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=95.55 E-value=0.041 Score=46.54 Aligned_cols=31 Identities=35% Similarity=0.460 Sum_probs=28.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CCcEEEEeC
Q 004891 309 RKVAVIGGGLMGSGIATAHILN-NIYVVLKEV 339 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~-G~~V~~~d~ 339 (725)
++++|+|.|.+|.+++..+.+. +.+|++||+
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 6899999999999999999998 678999987
No 400
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=95.52 E-value=0.37 Score=55.29 Aligned_cols=140 Identities=17% Similarity=0.085 Sum_probs=85.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHH--HHHhhCCCcEE
Q 004891 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV--NLIEDCKKPIV 102 (725)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~kp~I 102 (725)
-.+++....+.+.++++.+.+. .+-+|.|.-.|+.+ +.+ . .+ ........-+++. ..+.....|.|
T Consensus 142 GGs~g~~~~~Ki~r~~elA~~~-~lPlV~l~DSgGar-----l~~-q----~e-~~~~~~~~g~if~~~~~ls~~~VP~I 209 (569)
T PLN02820 142 GGTYYPITVKKHLRAQEIAAQC-RLPCIYLVDSGGAN-----LPR-Q----AE-VFPDRDHFGRIFYNQARMSSAGIPQI 209 (569)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcC-----Ccc-c----cc-ccchHhHHHHHHHHHHHHhCCCCCEE
Confidence 4799999999999999988765 45677775433332 211 0 00 0000001112221 22445679999
Q ss_pred EEEcccccchhhHHhhhcCEEEeeCC-ceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHHH------
Q 004891 103 AAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGW------ 175 (725)
Q Consensus 103 aav~G~a~GgG~~lalacD~~ia~~~-a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~------ 175 (725)
++|.|.|.|||......||++|++++ +.+++. |+...+ ..+|+.+++++.-
T Consensus 210 svv~G~~~gGgAy~~a~~D~vim~~~~a~i~~a--------------------GP~vV~--~~~Ge~v~~eeLGGa~~h~ 267 (569)
T PLN02820 210 ALVLGSCTAGGAYVPAMADESVIVKGNGTIFLA--------------------GPPLVK--AATGEEVSAEDLGGADVHC 267 (569)
T ss_pred EEEeCCCChHHHHHHHhCCceEEecCCcEEEec--------------------CHHHHH--hhcCcccCHHHhCCHHHhc
Confidence 99999999999999999999999954 555531 222221 1356667776652
Q ss_pred -HcCCcceecCcchHHHHHHHHHHHHH
Q 004891 176 -KLGLIDAVVTSEELLKVSRLWALDIA 201 (725)
Q Consensus 176 -~~Glv~~vv~~~~l~~~a~~~a~~la 201 (725)
..|.+|.+++.+ .++...++++.
T Consensus 268 ~~sGv~d~~~~de---~~a~~~~R~ll 291 (569)
T PLN02820 268 KVSGVSDHFAQDE---LHALAIGRNIV 291 (569)
T ss_pred ccccccccccCch---HHHHHHHHHHH
Confidence 478888887655 33444444433
No 401
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=95.45 E-value=0.031 Score=60.16 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=30.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCh
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (725)
.||.|||+|.+|+.+|..|+++|+ +++++|.+.
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 579999999999999999999998 899999875
No 402
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.45 E-value=0.056 Score=55.76 Aligned_cols=93 Identities=23% Similarity=0.288 Sum_probs=64.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccc----ccCc-c
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG----VLDY-S 383 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~----~~~~-~ 383 (725)
.||+|||.|..|.--|+...--|-+|++.|+|.+++...-+.+ . .++.. ..++ +
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f---------~------------~rv~~~~st~~~iee 227 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLF---------G------------GRVHTLYSTPSNIEE 227 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhh---------C------------ceeEEEEcCHHHHHH
Confidence 6899999999999999988888999999999999877643211 1 12111 1122 6
Q ss_pred cccCCCEEEEecc-CChHHHHHHHHHHHHhCCCCeEEEec
Q 004891 384 EFKDVDMVIEAVI-ESVPLKQKIFSELEKACPPHCILATN 422 (725)
Q Consensus 384 ~l~~aDlVIeavp-e~~~~k~~v~~~l~~~~~~~~ii~s~ 422 (725)
.+..+|+||-+|- .....=+-+.++..+.++|+.+|++.
T Consensus 228 ~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 228 AVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred HhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEE
Confidence 6899999998871 11111123456667778999988753
No 403
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.41 E-value=0.017 Score=63.71 Aligned_cols=38 Identities=26% Similarity=0.302 Sum_probs=32.3
Q ss_pred EEEEcCCCCcHHHHHHHHHCC-C-cEEEEeCChHHHHHHH
Q 004891 311 VAVIGGGLMGSGIATAHILNN-I-YVVLKEVNSEYLLKGI 348 (725)
Q Consensus 311 IaVIG~G~mG~~iA~~l~~~G-~-~V~~~d~~~e~~~~~~ 348 (725)
|.|+|+|.+|+.++..|++.+ + +|++.|++.+++++..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~ 40 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLA 40 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHH
Confidence 789999999999999999986 4 8999999999987764
No 404
>PRK07589 ornithine cyclodeaminase; Validated
Probab=95.39 E-value=0.058 Score=58.08 Aligned_cols=95 Identities=15% Similarity=0.183 Sum_probs=61.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891 309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~--G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (725)
++++|||+|..+...+..++.- --+|++|++++++.++..+++++ .+ + .+...++. +++
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~-------~~-~----------~v~~~~~~~~av 191 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG-------PG-L----------RIVACRSVAEAV 191 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh-------cC-C----------cEEEeCCHHHHH
Confidence 6799999999998887766542 33899999999998876554321 11 0 13334455 678
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004891 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (725)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 425 (725)
++||+|+.|.+.... ..+|. .+.++|++.|....|.
T Consensus 192 ~~ADIIvtaT~S~~~--~Pvl~--~~~lkpG~hV~aIGs~ 227 (346)
T PRK07589 192 EGADIITTVTADKTN--ATILT--DDMVEPGMHINAVGGD 227 (346)
T ss_pred hcCCEEEEecCCCCC--Cceec--HHHcCCCcEEEecCCC
Confidence 999999999863210 01111 1346788876554443
No 405
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.34 E-value=0.056 Score=61.01 Aligned_cols=40 Identities=25% Similarity=0.123 Sum_probs=37.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~ 348 (725)
.||.|+|+|.+|...++.+...|.+|+++|+++++++.+.
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~ae 205 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVE 205 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 6899999999999999999999999999999999988764
No 406
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=95.28 E-value=0.053 Score=56.38 Aligned_cols=78 Identities=15% Similarity=0.178 Sum_probs=45.8
Q ss_pred cceEEEEcCCCCcHHHHHHHHHC-CCcEEE-EeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccc
Q 004891 308 VRKVAVIGGGLMGSGIATAHILN-NIYVVL-KEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~-G~~V~~-~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 385 (725)
|.||+|||+|.||..++..+.+. +.++.. ++++.. .++..+. .. ..+..+++++.+
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~~~--------~~-------------~~~~~~~d~~~l 58 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS-IDAVRRA--------LG-------------EAVRVVSSVDAL 58 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC-HHHHhhh--------hc-------------cCCeeeCCHHHh
Confidence 35899999999999999999876 556543 343321 1111100 00 013334555444
Q ss_pred -cCCCEEEEeccCChHHHHHHHHHH
Q 004891 386 -KDVDMVIEAVIESVPLKQKIFSEL 409 (725)
Q Consensus 386 -~~aDlVIeavpe~~~~k~~v~~~l 409 (725)
.+.|+|++|.|.. .-.++..+.
T Consensus 59 ~~~~DvVve~t~~~--~~~e~~~~a 81 (265)
T PRK13303 59 PQRPDLVVECAGHA--ALKEHVVPI 81 (265)
T ss_pred ccCCCEEEECCCHH--HHHHHHHHH
Confidence 5689999999843 333444443
No 407
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.20 E-value=0.54 Score=50.13 Aligned_cols=40 Identities=23% Similarity=0.131 Sum_probs=33.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~ 348 (725)
++|+|+|+|-+|..-.+.....|.+|+++|+++++++.++
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~ 207 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAK 207 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHH
Confidence 6899999997776666666668999999999999988765
No 408
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.18 E-value=0.049 Score=56.95 Aligned_cols=70 Identities=17% Similarity=0.243 Sum_probs=51.4
Q ss_pred ceEEEEcCCC-CcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~-mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (725)
++|.|||.|. .|.++|..|.+.|..|+++++....+. +.+++
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~-------------------------------------~~~~~ 202 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLP-------------------------------------ELVKQ 202 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHH-------------------------------------HHhcc
Confidence 5899999997 999999999999999999997432211 23478
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEec
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 422 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ 422 (725)
+|+||.|++.+.-+. .+.+++++++++.
T Consensus 203 aDIvI~AtG~~~~v~-------~~~lk~gavViDv 230 (283)
T PRK14192 203 ADIIVGAVGKPELIK-------KDWIKQGAVVVDA 230 (283)
T ss_pred CCEEEEccCCCCcCC-------HHHcCCCCEEEEE
Confidence 999999995222121 1346788887754
No 409
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.12 E-value=0.097 Score=58.95 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=35.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (725)
+||.|+|+|.+|..+|..|.+.|++|+++|++++.++..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~ 39 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRL 39 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHH
Confidence 379999999999999999999999999999999987664
No 410
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=95.08 E-value=0.2 Score=52.26 Aligned_cols=89 Identities=15% Similarity=0.060 Sum_probs=65.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCh-HHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS-EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~-e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (725)
+++||+|.|.+|+-.|.++..-|..|+.||.-. .....+ . .++..+-.+.+..
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a-------------~-------------gvq~vsl~Eil~~ 200 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEA-------------F-------------GVQLVSLEEILPK 200 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHHh-------------c-------------cceeeeHHHHHhh
Confidence 689999999999999999999999999998643 222111 1 1233333367889
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (725)
||+|-.-+|-.++.+.-+-.+....++.+.-|+ |+|
T Consensus 201 ADFitlH~PLtP~T~~lin~~tfA~mKkGVriI-N~a 236 (406)
T KOG0068|consen 201 ADFITLHVPLTPSTEKLLNDETFAKMKKGVRII-NVA 236 (406)
T ss_pred cCEEEEccCCCcchhhccCHHHHHHhhCCcEEE-Eec
Confidence 999999999777776666666777788888775 444
No 411
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.07 E-value=0.39 Score=49.82 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=37.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHH
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~ 349 (725)
.+++|+|+|.+|.+.++....+|. +++.+|+|+++.+.+.+
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence 579999999999999999999987 89999999999888753
No 412
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.03 E-value=0.087 Score=61.06 Aligned_cols=96 Identities=13% Similarity=0.130 Sum_probs=61.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (725)
.+|-|+|+|.+|..+|+.|.+.|++|+++|.|+++++.+.+. ...+-.|..++.+.- ....+++|
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-----g~~~i~GD~~~~~~L----------~~a~i~~a 482 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-----GIRAVLGNAANEEIM----------QLAHLDCA 482 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-----CCeEEEcCCCCHHHH----------HhcCcccc
Confidence 679999999999999999999999999999999988776421 000011111100000 00246789
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEE
Q 004891 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (725)
Q Consensus 389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~ 420 (725)
|.|+.+++++.+... +...+.+..+.-.|++
T Consensus 483 ~~viv~~~~~~~~~~-iv~~~~~~~~~~~iia 513 (558)
T PRK10669 483 RWLLLTIPNGYEAGE-IVASAREKRPDIEIIA 513 (558)
T ss_pred CEEEEEcCChHHHHH-HHHHHHHHCCCCeEEE
Confidence 999999987765432 3333444443334554
No 413
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=95.03 E-value=0.82 Score=46.55 Aligned_cols=106 Identities=15% Similarity=0.148 Sum_probs=72.5
Q ss_pred ccCcccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcc---cCC-CCcEEEEecCCCCCCCC
Q 004891 379 VLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEK---TSS-QDRIIGAHFFSPAHVMP 454 (725)
Q Consensus 379 ~~~~~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~---~~~-~~r~ig~h~~~p~~~~~ 454 (725)
++|.++++++|++|.-.|..-. .-.+.+++.+.+++++|| +||.+++...+... +.+ .-.+..+||-.-|..-.
T Consensus 131 sDD~EAv~~aei~I~ftPfG~~-q~~Iikkii~~lpEgAII-~~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaaVPgt~~ 208 (340)
T TIGR01723 131 TDDREAVEDADIIITWLPKGNK-QPDIIKKFIDDIPEGAIV-THACTIPTTKFAKIFEDLGREDLNVTSYHPGCVPEMKG 208 (340)
T ss_pred cCcHHHhcCCCEEEEEcCCCCC-chHHHHHHHhhCCCCCEE-eccccCChHHHHHHHHhhCcccCCeeccCCCCCCCCCC
Confidence 4455899999999999985432 236778888999999988 57777777644433 332 23456667643221112
Q ss_pred eeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004891 455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (725)
Q Consensus 455 lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 487 (725)
-+=++. ...++|.++++.++.+..|+.+.++.
T Consensus 209 q~Yi~e-gyAtEEqI~klveL~~sa~k~ay~~P 240 (340)
T TIGR01723 209 QVYIAE-GYASEEAVNKLYELGKKARGKAFKMP 240 (340)
T ss_pred ceEeec-ccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 222333 34689999999999999999999873
No 414
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=95.01 E-value=0.41 Score=48.50 Aligned_cols=161 Identities=15% Similarity=0.187 Sum_probs=103.7
Q ss_pred EEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHH
Q 004891 15 VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL 93 (725)
Q Consensus 15 v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (725)
++...++-. -.-++..-.=+.+..+++.+-++ .+.+|+++..|+ +-++|-.- . ..++.. ....+ ..
T Consensus 124 vv~av~df~FmgGSmGsVvGeki~ra~E~A~e~-k~P~v~f~aSGG-----ARMQEg~l----S-LMQMak-tsaAl-~~ 190 (294)
T COG0777 124 VVLAVMDFAFMGGSMGSVVGEKITRAIERAIED-KLPLVLFSASGG-----ARMQEGIL----S-LMQMAK-TSAAL-KR 190 (294)
T ss_pred EEEEEEeccccccchhHHHHHHHHHHHHHHHHh-CCCEEEEecCcc-----hhHhHHHH----H-HHHHHH-HHHHH-HH
Confidence 333444333 23567777778888999888765 578899987653 22222100 0 011111 12334 45
Q ss_pred HhhCCCcEEEEEcccccch-hhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHH
Q 004891 94 IEDCKKPIVAAVEGLALGG-GLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172 (725)
Q Consensus 94 l~~~~kp~Iaav~G~a~Gg-G~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~ 172 (725)
+..-..|.|+.+..+..|| -..+++..|+.||.+.|.+||...++ .- +..++-+--| --+++
T Consensus 191 l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRV-----------IE-----QTire~LPeg-fQ~aE 253 (294)
T COG0777 191 LSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRV-----------IE-----QTIREKLPEG-FQTAE 253 (294)
T ss_pred HHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcchh-----------hh-----hhhcccCCcc-hhhHH
Confidence 7888999999999999988 57999999999999999888753321 00 1111111111 23678
Q ss_pred HHHHcCCcceecCcchHHHHHHHHHHHHHhcCc
Q 004891 173 EGWKLGLIDAVVTSEELLKVSRLWALDIAARRK 205 (725)
Q Consensus 173 eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~ 205 (725)
-.++.|+||.||+..++......+...+...++
T Consensus 254 fLlehG~iD~iv~R~elr~tla~ll~~~~~~~~ 286 (294)
T COG0777 254 FLLEHGMIDMIVHRDELRTTLASLLAKLTPQPA 286 (294)
T ss_pred HHHHcCCceeeecHHHHHHHHHHHHHHhCCCCC
Confidence 889999999999999998887777766655443
No 415
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.99 E-value=0.12 Score=60.23 Aligned_cols=96 Identities=20% Similarity=0.134 Sum_probs=61.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (725)
++|.|+|.|.+|..+++.|.+.|++|+++|.|+++++.+.+. ...+-.|..+..+.- ....+++|
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~~~L----------~~agi~~A 465 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY-----GYKVYYGDATQLELL----------RAAGAEKA 465 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC-----CCeEEEeeCCCHHHH----------HhcCCccC
Confidence 579999999999999999999999999999999998775421 000001111100000 00346789
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEE
Q 004891 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (725)
Q Consensus 389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~ 420 (725)
|.||.+++++... ..+...+.+..+.-.|++
T Consensus 466 ~~vv~~~~d~~~n-~~i~~~~r~~~p~~~Iia 496 (601)
T PRK03659 466 EAIVITCNEPEDT-MKIVELCQQHFPHLHILA 496 (601)
T ss_pred CEEEEEeCCHHHH-HHHHHHHHHHCCCCeEEE
Confidence 9999999865443 333344555444445554
No 416
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=94.94 E-value=0.07 Score=54.90 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=42.0
Q ss_pred CCcceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHH
Q 004891 306 RGVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEA 353 (725)
Q Consensus 306 ~~~~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~ 353 (725)
+..+++.|-|+ +-+|..+|..|++.|++|+++.|+++++++..+++++
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~ 52 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELED 52 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHH
Confidence 34567888898 9999999999999999999999999999988776654
No 417
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.89 E-value=0.075 Score=59.86 Aligned_cols=40 Identities=25% Similarity=0.136 Sum_probs=36.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~ 348 (725)
.||.|+|+|.+|...+..+...|..|+++|+++++++.+.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~ 204 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ 204 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 6899999999999999999999999999999999877654
No 418
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=94.80 E-value=0.052 Score=56.92 Aligned_cols=41 Identities=15% Similarity=0.268 Sum_probs=36.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHH
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~ 349 (725)
++|.|+|+|-.|++++..|++.|. +|+++||+.++++...+
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~ 169 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALAD 169 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Confidence 579999999999999999999997 79999999988776544
No 419
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.79 E-value=0.14 Score=57.58 Aligned_cols=41 Identities=27% Similarity=0.289 Sum_probs=37.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~ 348 (725)
.++|.|+|+|.+|..++..|.+.|++|+++|.+++..+...
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~ 271 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELA 271 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHH
Confidence 47899999999999999999999999999999999877653
No 420
>PRK06153 hypothetical protein; Provisional
Probab=94.77 E-value=0.074 Score=57.32 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=29.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 340 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 340 (725)
.+|+|||+|-.|+.++..|++.|. +++++|-+
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 479999999999999999999998 89999876
No 421
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=94.69 E-value=0.098 Score=53.12 Aligned_cols=160 Identities=13% Similarity=0.117 Sum_probs=80.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhh-------------cC
Q 004891 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNAL-------------KM 375 (725)
Q Consensus 310 kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~-------------~~ 375 (725)
||.|||+|..|+.++..|+..|. +++++|.+.-....... +.+-+..+-|.-..+.+...+ .+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnR---Qflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~ 77 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNR---QFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNK 77 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhcc---ccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 58999999999999999999998 78888876322111100 000000011111111111111 11
Q ss_pred cccccC--cccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEe-cCCCCChHHHhcccCCCCcEEEEecCCCCCC
Q 004891 376 LKGVLD--YSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT-NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHV 452 (725)
Q Consensus 376 i~~~~~--~~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s-~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~ 452 (725)
+....+ .+.+++.|+||.|+- +... +..+.+..... +..++. .+.+..- ...-..+........++..+...
T Consensus 78 i~~~~~~~~~f~~~~DvVi~a~D-n~~a-R~~ln~~c~~~--~iplI~~g~~G~~G-~v~vi~p~~t~c~~C~~~~~~~~ 152 (234)
T cd01484 78 VGPEQDFNDTFFEQFHIIVNALD-NIIA-RRYVNGMLIFL--IVPLIESGTEGFKG-NAQVILPGMTECIECTLYPPQKN 152 (234)
T ss_pred CChhhhchHHHHhCCCEEEECCC-CHHH-HHHHHHHHHHc--CCCEEEEcccCCce-EEEEEcCCCCCCcccCCCCCCCC
Confidence 110011 134688999999974 4443 34344432222 233332 2222221 11111111122333344344445
Q ss_pred CCeeeEecCCCCCHHHHHHHHHHHH
Q 004891 453 MPLLEIVRTERTSAQVILDLMTVGK 477 (725)
Q Consensus 453 ~~lveii~~~~t~~e~~~~~~~l~~ 477 (725)
.|...+-..|.+.+..++.++.++.
T Consensus 153 ~p~Cti~~~P~~~~hci~~a~~~~~ 177 (234)
T cd01484 153 FPMCTIASMPRLPEHCIEWARMLQW 177 (234)
T ss_pred CCccccCCCCCCchHHHHHHHHHHh
Confidence 5777777788888888888888875
No 422
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=94.68 E-value=0.17 Score=51.19 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=30.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCc---EEEEeCC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIY---VVLKEVN 340 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~---V~~~d~~ 340 (725)
+||.|+|+|.+|.++|..|...|.. |+++|++
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 5899999999999999999999985 9999999
No 423
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=94.68 E-value=0.14 Score=46.03 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=54.4
Q ss_pred ceEEEEc----CCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccc
Q 004891 309 RKVAVIG----GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (725)
Q Consensus 309 ~kIaVIG----~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (725)
++|+||| -+..|.-+...|.+.|++|+.++...+.+ ..+....++++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----------------------------~G~~~y~sl~e 51 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----------------------------LGIKCYPSLAE 51 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----------------------------TTEE-BSSGGG
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----------------------------CcEEeeccccC
Confidence 5799999 58889999999999999999998765331 12334455543
Q ss_pred c-cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEE
Q 004891 385 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (725)
Q Consensus 385 l-~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~ 420 (725)
. ...|+++.++| .+...++++++.+. ....+++
T Consensus 52 ~p~~iDlavv~~~--~~~~~~~v~~~~~~-g~~~v~~ 85 (116)
T PF13380_consen 52 IPEPIDLAVVCVP--PDKVPEIVDEAAAL-GVKAVWL 85 (116)
T ss_dssp CSST-SEEEE-S---HHHHHHHHHHHHHH-T-SEEEE
T ss_pred CCCCCCEEEEEcC--HHHHHHHHHHHHHc-CCCEEEE
Confidence 4 78999999998 77777888887765 3444443
No 424
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=94.67 E-value=0.024 Score=62.90 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=32.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCh
Q 004891 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (725)
|.+|.|||+|.+|.++|..|++.|++|+++|++.
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4699999999999999999999999999999875
No 425
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=94.64 E-value=0.081 Score=57.07 Aligned_cols=106 Identities=14% Similarity=0.043 Sum_probs=56.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHH-HhhcCcccccCc-cc
Q 004891 309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKAN-NALKMLKGVLDY-SE 384 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~-~~~~~i~~~~~~-~~ 384 (725)
.||+|+|+|.||..++..+... +++|+ +.|.+++..+...+.. .++. .+.. +.... -.-..+....++ +.
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~--G~~~---~~~~-~~~~~~~~~~~i~V~~~~~el 75 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEK--GYPL---YVAD-PEREKAFEEAGIPVAGTIEDL 75 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhc--CCCc---cccC-ccccccccCCceEEcCChhHh
Confidence 5899999999999999988764 66766 4565654433322110 0000 0000 00000 000123333344 34
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004891 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (725)
Q Consensus 385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 425 (725)
+.++|+||+|.|.... .+.... ++..++.++++++.
T Consensus 76 ~~~vDVVIdaT~~~~~--~e~a~~---~~~aGk~VI~~~~~ 111 (341)
T PRK04207 76 LEKADIVVDATPGGVG--AKNKEL---YEKAGVKAIFQGGE 111 (341)
T ss_pred hccCCEEEECCCchhh--HHHHHH---HHHCCCEEEEcCCC
Confidence 5789999999984433 333333 33456666666664
No 426
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.63 E-value=0.079 Score=55.09 Aligned_cols=70 Identities=17% Similarity=0.276 Sum_probs=53.4
Q ss_pred ceEEEEcCCCC-cHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891 309 RKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (725)
Q Consensus 309 ~kIaVIG~G~m-G~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (725)
++|.|||.|.. |.++|..|.+.|..|+++..... ++ +.++
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~--------------------------------------~l~~~~~ 200 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTR--------------------------------------DLAAHTR 200 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCC--------------------------------------CHHHHhh
Confidence 68999999877 99999999999999998754321 22 3568
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (725)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (725)
+||+||.+++.. .++.. ..+++++++++..
T Consensus 201 ~ADIVV~avG~~-----~~i~~--~~ik~gavVIDVG 230 (285)
T PRK14189 201 QADIVVAAVGKR-----NVLTA--DMVKPGATVIDVG 230 (285)
T ss_pred hCCEEEEcCCCc-----CccCH--HHcCCCCEEEEcc
Confidence 899999999832 23332 5688999988654
No 427
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=94.61 E-value=0.066 Score=57.68 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=30.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCh
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (725)
.||.|||+|.+|+.+|..|+++|. +++++|.+.
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 579999999999999999999999 999999874
No 428
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.61 E-value=0.24 Score=47.03 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=29.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN 340 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~ 340 (725)
++|.|||+|.+|...+..|.+.|++|++++.+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 68999999999999999999999999999643
No 429
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.60 E-value=0.044 Score=57.75 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=31.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCc-EEEEeCChH
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSE 342 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~-V~~~d~~~e 342 (725)
+++.|+|+|-+|.+++..|++.|++ |++++|+++
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~ 161 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD 161 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch
Confidence 5788999999999999999999996 999999973
No 430
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=94.58 E-value=0.04 Score=60.58 Aligned_cols=40 Identities=25% Similarity=0.266 Sum_probs=33.9
Q ss_pred ceEEEEcCCCCcHHH-HHHHHHCCCcEEEEeCChHHHHHHH
Q 004891 309 RKVAVIGGGLMGSGI-ATAHILNNIYVVLKEVNSEYLLKGI 348 (725)
Q Consensus 309 ~kIaVIG~G~mG~~i-A~~l~~~G~~V~~~d~~~e~~~~~~ 348 (725)
+||.++|+|.||++. ...|.++|++|+++|++++.++...
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~ 41 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALN 41 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHh
Confidence 479999999999855 8888899999999999888666543
No 431
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=94.54 E-value=0.099 Score=53.27 Aligned_cols=84 Identities=21% Similarity=0.210 Sum_probs=64.4
Q ss_pred HHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHH
Q 004891 93 LIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172 (725)
Q Consensus 93 ~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~ 172 (725)
.+.+++.|+||.|=|---+||.-=..-+|.+.|.+.+.|+. +.|.++++..+.. ..+|.+. .....++|+
T Consensus 183 em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~AsILWkD---~~ka~eA-Ae~mkita~ 252 (317)
T COG0825 183 EMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCASILWKD---ASKAKEA-AEAMKITAH 252 (317)
T ss_pred HHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhhhhhcC---hhhhHHH-HHHcCCCHH
Confidence 48899999999999987777776666789999999999874 4566666655543 2334333 344679999
Q ss_pred HHHHcCCcceecCc
Q 004891 173 EGWKLGLIDAVVTS 186 (725)
Q Consensus 173 eA~~~Glv~~vv~~ 186 (725)
+.+++|+||.|+|.
T Consensus 253 dLk~lgiID~II~E 266 (317)
T COG0825 253 DLKELGIIDGIIPE 266 (317)
T ss_pred HHHhCCCcceeccC
Confidence 99999999999963
No 432
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.51 E-value=0.048 Score=45.28 Aligned_cols=35 Identities=37% Similarity=0.470 Sum_probs=32.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHH
Q 004891 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL 344 (725)
Q Consensus 310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~ 344 (725)
||.|||+|..|.-+|..|++.|.+|+++++++.-.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 68999999999999999999999999999987654
No 433
>PRK06199 ornithine cyclodeaminase; Validated
Probab=94.47 E-value=0.071 Score=58.26 Aligned_cols=74 Identities=18% Similarity=0.153 Sum_probs=52.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHC--CC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-c
Q 004891 308 VRKVAVIGGGLMGSGIATAHILN--NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~--G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (725)
.++++|||+|.++......++.- .+ +|.+|+|+++++++..+++...+. +. ..+...++. +
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~-----~~----------~~v~~~~s~~e 219 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYP-----QI----------TNVEVVDSIEE 219 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcC-----CC----------ceEEEeCCHHH
Confidence 36799999999999999888763 23 899999999998876554332110 10 013334455 6
Q ss_pred cccCCCEEEEecc
Q 004891 384 EFKDVDMVIEAVI 396 (725)
Q Consensus 384 ~l~~aDlVIeavp 396 (725)
++++||+|+.|.+
T Consensus 220 av~~ADIVvtaT~ 232 (379)
T PRK06199 220 VVRGSDIVTYCNS 232 (379)
T ss_pred HHcCCCEEEEccC
Confidence 7899999998885
No 434
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=94.44 E-value=0.83 Score=48.05 Aligned_cols=97 Identities=19% Similarity=0.193 Sum_probs=55.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCC-HHHHHHhhcCcccccCcccc
Q 004891 309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLT-QDKANNALKMLKGVLDYSEF 385 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~l 385 (725)
.||||||+|.+|...+..+.+. +.++. ++|+++++...... .+.|.-. ....+..+. ...+
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A---------~~~Gi~~~~~~ie~LL~-------~~~~ 68 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARA---------RRLGVATSAEGIDGLLA-------MPEF 68 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHH---------HHcCCCcccCCHHHHHh-------CcCC
Confidence 5799999999999988777754 56665 77998865321111 0112110 001111110 0124
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC
Q 004891 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 426 (725)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~ 426 (725)
.+.|+|+++.|.... .+.... ....++.++++++..
T Consensus 69 ~dIDiVf~AT~a~~H--~e~a~~---a~eaGk~VID~sPA~ 104 (302)
T PRK08300 69 DDIDIVFDATSAGAH--VRHAAK---LREAGIRAIDLTPAA 104 (302)
T ss_pred CCCCEEEECCCHHHH--HHHHHH---HHHcCCeEEECCccc
Confidence 679999999984333 333333 345678888777654
No 435
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=94.32 E-value=0.034 Score=54.51 Aligned_cols=57 Identities=21% Similarity=0.239 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHH--hCHHHH
Q 004891 623 EIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADA--VGANYV 680 (725)
Q Consensus 623 ~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~--~G~~~~ 680 (725)
...||+.++++||.-+++..||. +..|+|..|..|+|.+..-.||++.+-. -|+...
T Consensus 190 f~lnriq~Ailne~wrLvasGil-~v~dvD~VmS~GLG~RYAflG~lET~HLNA~Gv~dY 248 (313)
T KOG2305|consen 190 FALNRIQYAILNETWRLVASGIL-NVNDVDAVMSAGLGPRYAFLGPLETAHLNAEGVADY 248 (313)
T ss_pred ceeccccHHHHHHHHHHHHccCc-chhhHHHHHhcCCCcchhcccchhhhhcCcHHHHHH
Confidence 36899999999999999999999 8999999999999988888999997643 354333
No 436
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=94.30 E-value=0.14 Score=55.42 Aligned_cols=100 Identities=17% Similarity=0.169 Sum_probs=57.6
Q ss_pred cceEEEEcC-CCCcHHHHHHHHHC-CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc--c
Q 004891 308 VRKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--S 383 (725)
Q Consensus 308 ~~kIaVIG~-G~mG~~iA~~l~~~-G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~--~ 383 (725)
|.||+|||+ |.+|..++..|.+. +++++.+-.+.+..+...+. .... .+.. ... ..+. .
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~----~~~~--~~~~----------~~~-~~~~~~~ 64 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDV----HPHL--RGLV----------DLV-LEPLDPE 64 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHh----Cccc--cccc----------Cce-eecCCHH
Confidence 469999997 99999999999876 66765543332221111100 0000 0000 001 1111 1
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 004891 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (725)
Q Consensus 384 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 429 (725)
...++|+|+.|+|.+.. .++..++. ..++.|+++++...+.
T Consensus 65 ~~~~vD~Vf~alP~~~~--~~~v~~a~---~aG~~VID~S~~fR~~ 105 (343)
T PRK00436 65 ILAGADVVFLALPHGVS--MDLAPQLL---EAGVKVIDLSADFRLK 105 (343)
T ss_pred HhcCCCEEEECCCcHHH--HHHHHHHH---hCCCEEEECCcccCCC
Confidence 34679999999995433 34444432 4688888998877663
No 437
>PLN03075 nicotianamine synthase; Provisional
Probab=94.24 E-value=0.34 Score=50.79 Aligned_cols=101 Identities=18% Similarity=0.143 Sum_probs=67.1
Q ss_pred cceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccc-cCc--
Q 004891 308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY-- 382 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~--G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-- 382 (725)
-++|+.||+|..|.+-...++.. +-.++.+|++++.++.+++.+.. ..+ + -.++++. .|.
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~------~~g-L--------~~rV~F~~~Da~~ 188 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS------DPD-L--------SKRMFFHTADVMD 188 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh------ccC-c--------cCCcEEEECchhh
Confidence 37899999999876554444333 34799999999999888754321 011 0 0123332 111
Q ss_pred --ccccCCCEEEEeccC--ChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891 383 --SEFKDVDMVIEAVIE--SVPLKQKIFSELEKACPPHCILATNT 423 (725)
Q Consensus 383 --~~l~~aDlVIeavpe--~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (725)
....+.|+|+..+-- +..-+.++++.+.+.++||.+++.-+
T Consensus 189 ~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 189 VTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 235689999988622 23678899999999999999887544
No 438
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=94.11 E-value=0.12 Score=48.19 Aligned_cols=32 Identities=25% Similarity=0.404 Sum_probs=29.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCh
Q 004891 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (725)
Q Consensus 310 kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (725)
||.|||+|.+|+.++..|++.|. +++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999999998 799999763
No 439
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=94.07 E-value=0.11 Score=53.08 Aligned_cols=98 Identities=16% Similarity=0.145 Sum_probs=55.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC-----------CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCc-
Q 004891 309 RKVAVIGGGLMGSGIATAHILNN-----------IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML- 376 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G-----------~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i- 376 (725)
.||.|||+|-.|+.++..|++.| .+++++|.+.=.... +.+++-...+-|....+.....+..+
T Consensus 12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sN----LnRQlf~~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEAN----VGRQAFYPADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccch----hhcccCChhHCCcHHHHHHHHHHHhcc
Confidence 58999999999999999999974 289999976322111 11111111122222222222222211
Q ss_pred ----ccccC----cccccCCCEEEEeccCChHHHHHHHHHHHH
Q 004891 377 ----KGVLD----YSEFKDVDMVIEAVIESVPLKQKIFSELEK 411 (725)
Q Consensus 377 ----~~~~~----~~~l~~aDlVIeavpe~~~~k~~v~~~l~~ 411 (725)
..... .+.+.++|+||.|+ ++...+..+.+....
T Consensus 88 ~~~i~a~~~~~~~~~~~~~~DiVi~av-Dn~~aR~~l~~~~~~ 129 (244)
T TIGR03736 88 GTDWTAHPERVERSSTLHRPDIVIGCV-DNRAARLAILRAFEG 129 (244)
T ss_pred CceEEEEEeeeCchhhhcCCCEEEECC-CCHHHHHHHHHHHHH
Confidence 11110 12356799999998 467777777666554
No 440
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=94.06 E-value=0.14 Score=53.17 Aligned_cols=32 Identities=34% Similarity=0.436 Sum_probs=26.2
Q ss_pred ceEEEEc-CCCCcHHHHHHHHH-CCCcEE-EEeCC
Q 004891 309 RKVAVIG-GGLMGSGIATAHIL-NNIYVV-LKEVN 340 (725)
Q Consensus 309 ~kIaVIG-~G~mG~~iA~~l~~-~G~~V~-~~d~~ 340 (725)
.||+|+| +|.||..++..+.+ .+++++ ++|++
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~ 36 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH 36 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 4899999 59999999999986 578766 57743
No 441
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.05 E-value=0.12 Score=45.31 Aligned_cols=72 Identities=19% Similarity=0.413 Sum_probs=49.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccccc-Cc-cccc
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DY-SEFK 386 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~-~~l~ 386 (725)
++|.|||.|.+|..=+..|.+.|.+|+++..+.+..+ + .++... .+ +.+.
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----------------~------------~i~~~~~~~~~~l~ 59 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----------------G------------LIQLIRREFEEDLD 59 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----------------T------------SCEEEESS-GGGCT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----------------h------------HHHHHhhhHHHHHh
Confidence 6899999999999999999999999999999861111 1 111111 11 5688
Q ss_pred CCCEEEEeccCChHHHHHHHHHH
Q 004891 387 DVDMVIEAVIESVPLKQKIFSEL 409 (725)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l 409 (725)
++|+||.|. ++..+.+.+...-
T Consensus 60 ~~~lV~~at-~d~~~n~~i~~~a 81 (103)
T PF13241_consen 60 GADLVFAAT-DDPELNEAIYADA 81 (103)
T ss_dssp TESEEEE-S-S-HHHHHHHHHHH
T ss_pred hheEEEecC-CCHHHHHHHHHHH
Confidence 899999765 4666666665544
No 442
>PRK12829 short chain dehydrogenase; Provisional
Probab=94.01 E-value=0.25 Score=50.86 Aligned_cols=39 Identities=28% Similarity=0.286 Sum_probs=34.7
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 004891 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (725)
Q Consensus 309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (725)
++|.|+|+ |.+|..++..|++.|++|++.+++++..+..
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~ 51 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAAT 51 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 68999987 9999999999999999999999998766554
No 443
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=94.00 E-value=0.085 Score=55.48 Aligned_cols=34 Identities=15% Similarity=0.319 Sum_probs=31.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChH
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE 342 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e 342 (725)
+++.|||+|-.+++++..++..|. +|++++|+++
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 579999999999999999999997 8999999965
No 444
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.99 E-value=0.32 Score=55.39 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=32.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHH
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~ 343 (725)
++|.|+|+|..|.+.+..|...|++|+++|.+++.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~ 47 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDA 47 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 68999999999999999999999999999987654
No 445
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=93.97 E-value=0.27 Score=57.57 Aligned_cols=95 Identities=14% Similarity=0.121 Sum_probs=61.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc--ccc
Q 004891 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--SEF 385 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~l 385 (725)
-++|-|+|.|.+|..+|+.|.+.|++++++|.|+++++.+.+. ...+-.|..+.. +-+ ..+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~------------~~L~~agi 462 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF-----GMKVFYGDATRM------------DLLESAGA 462 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc-----CCeEEEEeCCCH------------HHHHhcCC
Confidence 3689999999999999999999999999999999998876421 000001111100 001 346
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEE
Q 004891 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (725)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~ 420 (725)
.++|+||.++.++... ..+...+.+..+.-.|++
T Consensus 463 ~~A~~vvv~~~d~~~n-~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 463 AKAEVLINAIDDPQTS-LQLVELVKEHFPHLQIIA 496 (621)
T ss_pred CcCCEEEEEeCCHHHH-HHHHHHHHHhCCCCeEEE
Confidence 7899999998654433 334444444444444554
No 446
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=93.96 E-value=0.84 Score=45.54 Aligned_cols=131 Identities=23% Similarity=0.235 Sum_probs=79.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCh-HHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS-EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~-e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (725)
++|.|||.|..|..=+..|++.|.+|+++..+. +.+.. +...+.+.. +.-.-+.+.+.+
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~-----------~~~~~~i~~---------~~~~~~~~~~~~ 72 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKA-----------LIEEGKIKW---------IEREFDAEDLDD 72 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHH-----------HHHhcCcch---------hhcccChhhhcC
Confidence 589999999999999999999999999998776 22222 223332221 111222355677
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCC--CCCCeeeEecCCCCC
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTERTS 465 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~--~~~~lveii~~~~t~ 465 (725)
+++||.|+. |..+.+.+++...+. .+++ |...- |.. ++|+.|. ...++.-.+.+.+.+
T Consensus 73 ~~lviaAt~-d~~ln~~i~~~a~~~----~i~v-Nv~D~-----------p~~---~~f~~Pa~~~r~~l~iaIsT~G~s 132 (210)
T COG1648 73 AFLVIAATD-DEELNERIAKAARER----RILV-NVVDD-----------PEL---CDFIFPAIVDRGPLQIAISTGGKS 132 (210)
T ss_pred ceEEEEeCC-CHHHHHHHHHHHHHh----CCce-eccCC-----------ccc---CceecceeeccCCeEEEEECCCCC
Confidence 999998875 677777776655443 2332 22211 111 2333343 333555566666677
Q ss_pred HHHHHHHHHHHHHc
Q 004891 466 AQVILDLMTVGKII 479 (725)
Q Consensus 466 ~e~~~~~~~l~~~l 479 (725)
|.....++.-.+.+
T Consensus 133 P~la~~ir~~Ie~~ 146 (210)
T COG1648 133 PVLARLLREKIEAL 146 (210)
T ss_pred hHHHHHHHHHHHHH
Confidence 77777776666553
No 447
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=93.93 E-value=0.28 Score=55.77 Aligned_cols=166 Identities=16% Similarity=0.131 Sum_probs=99.2
Q ss_pred EeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhh
Q 004891 19 TLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIED 96 (725)
Q Consensus 19 ~l~~p~~--Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 96 (725)
.=|+|.. -+++++-.....+.+..++. -++-.|.|.-. +.|..|-+- +.........+++ .++.+
T Consensus 299 ian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dt-pGf~~g~~~----------E~~g~~~~ga~~~-~a~~~ 365 (493)
T PF01039_consen 299 IANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDT-PGFMPGPEA----------ERAGIIRAGARLL-YALAE 365 (493)
T ss_dssp EEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEE-CEB--SHHH----------HHTTHHHHHHHHH-HHHHH
T ss_pred EEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeec-ccccccchh----------hhcchHHHHHHHH-HHHHc
Confidence 3356643 37999999999999988886 36777777533 234443221 1223345566777 77999
Q ss_pred CCCcEEEEEcccccchhhHHhhhc----CEEEeeCCceEeCcccccCCCCCchhhchHhhhh-------C--HHH-HHHH
Q 004891 97 CKKPIVAAVEGLALGGGLELAMGC----HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV-------G--LSK-AIEM 162 (725)
Q Consensus 97 ~~kp~Iaav~G~a~GgG~~lalac----D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~v-------G--~~~-a~~l 162 (725)
+..|+|..|-|.++|||..-+..+ |+++|.++++++ ++++.+.+..+.+.- | ... ..++
T Consensus 366 ~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~-------vm~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~ 438 (493)
T PF01039_consen 366 ATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIG-------VMGPEGAASILYRDELEAAEAEGADPEAQRAEK 438 (493)
T ss_dssp H-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEE-------SS-HHHHHHHHTHHHHHHSCHCCHSHHHHHHHH
T ss_pred CCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceee-------ecChhhhheeeehhhhhhhhcccchhHHHHHHH
Confidence 999999999999999887555555 788777776665 444444433332221 0 000 1111
Q ss_pred HH--cCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcC
Q 004891 163 ML--LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR 204 (725)
Q Consensus 163 ~l--~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~ 204 (725)
+- .-+..++..+...|++|.|+++.+...........+.+++
T Consensus 439 ~~~~~~~~~~~~~~a~~~~~D~ii~p~~tR~~l~~~l~~~~~~~ 482 (493)
T PF01039_consen 439 IAEYEDELSSPYRAASRGYVDDIIDPAETRKVLIAALEMLWQKP 482 (493)
T ss_dssp HHHHHHHHSSHHHHHHTTSSSEESSGGGHHHHHHHHHHHHTTSH
T ss_pred HHHHHHhcCCHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHhCc
Confidence 11 1122588999999999999999998777776665554443
No 448
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=93.86 E-value=0.39 Score=50.78 Aligned_cols=147 Identities=22% Similarity=0.244 Sum_probs=79.8
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCc---EEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccc
Q 004891 309 RKVAVIGG-GLMGSGIATAHILNNIY---VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (725)
Q Consensus 309 ~kIaVIG~-G~mG~~iA~~l~~~G~~---V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (725)
.||||+|+ |..|.-+...|.+..+. +.++-.....=++..+ -.++ ...-.....+...
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~----------f~~~--------~~~v~~~~~~~~~ 63 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIE----------FGGK--------SIGVPEDAADEFV 63 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCcccc----------ccCc--------cccCccccccccc
Confidence 58999988 99999999999997553 3444333222111000 0000 0000111133456
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCee---eEecC
Q 004891 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLL---EIVRT 461 (725)
Q Consensus 385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lv---eii~~ 461 (725)
.+++|+|+.|.+.+.. +++..++. ..++++++|+|.+.+..-...+ +...||-++...- -|+.+
T Consensus 64 ~~~~Divf~~ag~~~s--~~~~p~~~---~~G~~VIdnsSa~Rm~~DVPLV--------VPeVN~~~l~~~~~rg~Iian 130 (334)
T COG0136 64 FSDVDIVFFAAGGSVS--KEVEPKAA---EAGCVVIDNSSAFRMDPDVPLV--------VPEVNPEHLIDYQKRGFIIAN 130 (334)
T ss_pred cccCCEEEEeCchHHH--HHHHHHHH---HcCCEEEeCCcccccCCCCCEe--------cCCcCHHHHHhhhhCCCEEEC
Confidence 6799999999984444 55555554 4689999999987654221111 1111211111000 13433
Q ss_pred C-CCCHHHHHHHHHHHHHcCCeeEEE
Q 004891 462 E-RTSAQVILDLMTVGKIIKKVPVVV 486 (725)
Q Consensus 462 ~-~t~~e~~~~~~~l~~~lGk~~v~v 486 (725)
+ .+....+-.+.++.+..|-.-+.+
T Consensus 131 pNCst~~l~~aL~PL~~~~~i~~v~V 156 (334)
T COG0136 131 PNCSTIQLVLALKPLHDAFGIKRVVV 156 (334)
T ss_pred CChHHHHHHHHHHHHHhhcCceEEEE
Confidence 3 345566677778888777544443
No 449
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.84 E-value=0.21 Score=54.17 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=35.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHH
Q 004891 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (725)
Q Consensus 310 kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~ 349 (725)
+|.|+|+|.||.-.++.+...|. +|++.|+++++++.+++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 79999999999998888888886 78888999999988754
No 450
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=93.80 E-value=0.12 Score=49.18 Aligned_cols=73 Identities=19% Similarity=0.257 Sum_probs=48.1
Q ss_pred ceEEEEcCC-CCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G-~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (725)
++|.|||-+ ..|.+++..|.+.|..|++.+...+.++ +.++.
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~-------------------------------------~~~~~ 79 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQ-------------------------------------EITRR 79 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHH-------------------------------------HHHTT
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccc-------------------------------------ceeee
Confidence 689999996 6899999999999999999887643322 24578
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 425 (725)
||+||.++.-.--++ .+.+++++++++....
T Consensus 80 ADIVVsa~G~~~~i~-------~~~ik~gavVIDvG~~ 110 (160)
T PF02882_consen 80 ADIVVSAVGKPNLIK-------ADWIKPGAVVIDVGIN 110 (160)
T ss_dssp SSEEEE-SSSTT-B--------GGGS-TTEEEEE--CE
T ss_pred ccEEeeeeccccccc-------cccccCCcEEEecCCc
Confidence 999999996433332 2357899998865443
No 451
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.78 E-value=0.44 Score=47.85 Aligned_cols=131 Identities=21% Similarity=0.227 Sum_probs=74.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChH-HHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e-~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (725)
++|.|||+|.++..=+..|++.|.+|+++..+-. .+.. +...+.++ .+.-.-+.+.+.+
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~-----------l~~~~~i~---------~~~r~~~~~dl~g 85 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLD-----------LKKYGNLK---------LIKGNYDKEFIKD 85 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHH-----------HHhCCCEE---------EEeCCCChHHhCC
Confidence 4899999999999999999999999999966532 1111 12223221 0110112256789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCC--CCCCeeeEecCCCCC
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTERTS 465 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~--~~~~lveii~~~~t~ 465 (725)
+++||.|. +|.++-+.+... +....+++.+...... ..|+.|. ..+++.-.+.+.+.+
T Consensus 86 ~~LViaAT-dD~~vN~~I~~~----a~~~~~lvn~vd~p~~---------------~dFi~PAiv~rg~l~IaIST~G~s 145 (223)
T PRK05562 86 KHLIVIAT-DDEKLNNKIRKH----CDRLYKLYIDCSDYKK---------------GLCIIPYQRSTKNFVFALNTKGGS 145 (223)
T ss_pred CcEEEECC-CCHHHHHHHHHH----HHHcCCeEEEcCCccc---------------CeEEeeeEEecCCEEEEEECCCcC
Confidence 99999886 466666555543 3332233222221110 1233343 333455556666667
Q ss_pred HHHHHHHHHHHHHc
Q 004891 466 AQVILDLMTVGKII 479 (725)
Q Consensus 466 ~e~~~~~~~l~~~l 479 (725)
|.....++.-++.+
T Consensus 146 P~lar~lR~~ie~~ 159 (223)
T PRK05562 146 PKTSVFIGEKVKNF 159 (223)
T ss_pred cHHHHHHHHHHHHH
Confidence 77766666665543
No 452
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=93.78 E-value=0.15 Score=53.05 Aligned_cols=40 Identities=20% Similarity=0.014 Sum_probs=35.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHH
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI 348 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~ 348 (725)
+++.|+|+|-.+.+++..|++.|. +|++++|++++.+...
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la 163 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALA 163 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence 479999999999999999999998 5999999998776543
No 453
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.73 E-value=0.32 Score=55.09 Aligned_cols=37 Identities=30% Similarity=0.283 Sum_probs=33.3
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHH
Q 004891 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (725)
Q Consensus 307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~ 343 (725)
..+||.|+|+|..|.++|..|.+.|++|+++|++...
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~ 50 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETA 50 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHH
Confidence 4578999999999999999999999999999987543
No 454
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.68 E-value=0.15 Score=52.98 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=52.9
Q ss_pred ceEEEEcCC-CCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G-~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (725)
++|.|||-| ..|.++|..|.+.|..|+++......+. +.+++
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~-------------------------------------~~~~~ 200 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLS-------------------------------------FYTQN 200 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHH-------------------------------------HHHHh
Confidence 689999998 9999999999999999999865432211 24577
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (725)
||+||.|+.-.--++. +++++++++++..
T Consensus 201 ADIvV~AvG~p~~i~~-------~~vk~GavVIDvG 229 (285)
T PRK14191 201 ADIVCVGVGKPDLIKA-------SMVKKGAVVVDIG 229 (285)
T ss_pred CCEEEEecCCCCcCCH-------HHcCCCcEEEEee
Confidence 9999999963333322 3468999887644
No 455
>PRK12828 short chain dehydrogenase; Provisional
Probab=93.67 E-value=0.12 Score=52.16 Aligned_cols=39 Identities=26% Similarity=0.264 Sum_probs=34.0
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 004891 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (725)
Q Consensus 309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (725)
++|.|+|+ |.+|..++..|++.|++|++.+++++.....
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~ 47 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQT 47 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHH
Confidence 57889987 9999999999999999999999998765443
No 456
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=93.59 E-value=0.12 Score=52.52 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=29.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCh
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (725)
.||.|||+|.+|+.+|..|++.|. +++++|.+.
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 589999999999999999999998 788887653
No 457
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=93.54 E-value=0.17 Score=51.21 Aligned_cols=31 Identities=29% Similarity=0.248 Sum_probs=28.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEE-EEeC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVV-LKEV 339 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~-~~d~ 339 (725)
++|+|.|.|.+|..+|..|.+.|.+|+ +.|.
T Consensus 32 ~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 32 ARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 689999999999999999999999998 7777
No 458
>PRK06194 hypothetical protein; Provisional
Probab=93.40 E-value=0.38 Score=50.32 Aligned_cols=41 Identities=17% Similarity=0.265 Sum_probs=35.2
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 004891 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (725)
Q Consensus 309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (725)
++|.|.|+ |.+|..+|..|++.|++|+++|++.+.++...+
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVA 48 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Confidence 57888876 899999999999999999999999887666544
No 459
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=93.38 E-value=0.22 Score=52.43 Aligned_cols=90 Identities=23% Similarity=0.266 Sum_probs=62.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (725)
+++.|.|.|..|.++|..+...|.+|++++++|-.+-++. ++..+...-.+++..+
T Consensus 210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~------------------------MdGf~V~~m~~Aa~~g 265 (420)
T COG0499 210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAA------------------------MDGFRVMTMEEAAKTG 265 (420)
T ss_pred ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHh------------------------hcCcEEEEhHHhhhcC
Confidence 5677889999999999999999999999999986533321 1233333333677889
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 004891 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427 (725)
Q Consensus 389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~ 427 (725)
|++|.|....--+..+-+ ..++.++|++ |...+.
T Consensus 266 DifiT~TGnkdVi~~eh~----~~MkDgaIl~-N~GHFd 299 (420)
T COG0499 266 DIFVTATGNKDVIRKEHF----EKMKDGAILA-NAGHFD 299 (420)
T ss_pred CEEEEccCCcCccCHHHH----HhccCCeEEe-cccccc
Confidence 999999864444433333 3467788775 554333
No 460
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=93.36 E-value=0.22 Score=46.24 Aligned_cols=72 Identities=18% Similarity=0.236 Sum_probs=53.8
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (725)
Q Consensus 309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (725)
++|.|+|- ...|.++|..|.+.|..|++.+.+...++ +.+++
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~-------------------------------------~~v~~ 71 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQ-------------------------------------SKVHD 71 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHH-------------------------------------HHHhh
Confidence 68999998 66799999999999999999986532211 24678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (725)
||+||.++.-..-++. +.+++++++++...
T Consensus 72 ADIVvsAtg~~~~i~~-------~~ikpGa~Vidvg~ 101 (140)
T cd05212 72 ADVVVVGSPKPEKVPT-------EWIKPGATVINCSP 101 (140)
T ss_pred CCEEEEecCCCCccCH-------HHcCCCCEEEEcCC
Confidence 9999999974433332 34789999875443
No 461
>PRK07326 short chain dehydrogenase; Provisional
Probab=93.35 E-value=0.16 Score=51.35 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=34.8
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (725)
Q Consensus 309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~ 348 (725)
++|.|+|+ |.+|..++..|++.|++|++.+++++..+...
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~ 47 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAA 47 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHH
Confidence 57888886 99999999999999999999999987765543
No 462
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=93.27 E-value=0.061 Score=58.98 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=30.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 340 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 340 (725)
.||.|||+|..|+.++..|++.|. +++++|.+
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 479999999999999999999998 79999987
No 463
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=93.24 E-value=0.072 Score=58.06 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=29.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 340 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 340 (725)
.+|.|||+|.+|+.++..|++.|. +++++|.+
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 479999999999999999999997 89999987
No 464
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.20 E-value=0.24 Score=56.30 Aligned_cols=47 Identities=21% Similarity=0.174 Sum_probs=36.7
Q ss_pred CCCCCCCCCCCCCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChH
Q 004891 295 VPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (725)
Q Consensus 295 ~~~~~~~~~~~~~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e 342 (725)
.|+...++.. ..-++|.|||+|..|.++|..|++.|++|+++|.++.
T Consensus 4 ~~~~~~~~~~-~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 4 PPGLTSWHSD-WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred ccchhhcccC-cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 3444444432 2346899999999999999999999999999997653
No 465
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=93.12 E-value=0.44 Score=54.45 Aligned_cols=41 Identities=15% Similarity=0.060 Sum_probs=35.4
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 004891 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (725)
Q Consensus 309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (725)
++|.|.|+ |.+|..++..|++.|++|++++|+.+.++...+
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~ 122 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQ 122 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 46778887 999999999999999999999999988765543
No 466
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.08 E-value=0.85 Score=51.31 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=32.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCh
Q 004891 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (725)
-++|.|+|+|.+|.++|..|++.|++|+++|++.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3689999999999999999999999999999985
No 467
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=93.06 E-value=0.067 Score=58.06 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=30.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCh
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (725)
.||.|||+|..|+.++..|++.|. +++++|.+.
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 589999999999999999999998 788999774
No 468
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.02 E-value=0.27 Score=50.96 Aligned_cols=73 Identities=15% Similarity=0.236 Sum_probs=54.9
Q ss_pred ceEEEEcCC-CCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G-~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (725)
++|.|||-+ ..|.++|..|...|..|+.+..+...+. +.+++
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~-------------------------------------~~~~~ 195 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLK-------------------------------------AELRQ 195 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHH-------------------------------------HHHhh
Confidence 689999998 8999999999999999999987654322 24578
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 425 (725)
||+||-+++-..-++.+ .++++++|++....
T Consensus 196 ADIvI~Avgk~~lv~~~-------~vk~GavVIDVgi~ 226 (279)
T PRK14178 196 ADILVSAAGKAGFITPD-------MVKPGATVIDVGIN 226 (279)
T ss_pred CCEEEECCCcccccCHH-------HcCCCcEEEEeecc
Confidence 99999999733223222 36899998865543
No 469
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=92.96 E-value=0.18 Score=51.81 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=29.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCh
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (725)
.||.|||+|..|+.+|..|++.|. +++++|.+.
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 589999999999999999999998 788988753
No 470
>PRK08223 hypothetical protein; Validated
Probab=92.92 E-value=0.28 Score=51.09 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=30.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCh
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (725)
.||.|||+|-+|+.+|..|+++|. +++++|-+.
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 479999999999999999999998 788998764
No 471
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.85 E-value=0.27 Score=51.20 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=53.0
Q ss_pred ceEEEEcCCC-CcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~-mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (725)
++|.|||-|. .|.++|..|.+.|..|+++......+. +.+++
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~ 202 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLR-------------------------------------HHVRN 202 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHH-------------------------------------HHHhh
Confidence 6899999987 999999999999999999876432211 34678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (725)
||+||.++.-.--++. +.+++++++++..
T Consensus 203 ADIvi~avG~p~~v~~-------~~vk~gavVIDvG 231 (285)
T PRK10792 203 ADLLVVAVGKPGFIPG-------EWIKPGAIVIDVG 231 (285)
T ss_pred CCEEEEcCCCcccccH-------HHcCCCcEEEEcc
Confidence 9999999942222222 5678999988644
No 472
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=92.84 E-value=0.24 Score=49.75 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=29.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCh
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (725)
++|+|.|+|++|..+|..|.+.|. .|.+.|.+.
T Consensus 24 ~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 689999999999999999999988 556788876
No 473
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=92.82 E-value=0.23 Score=50.30 Aligned_cols=42 Identities=21% Similarity=0.134 Sum_probs=35.9
Q ss_pred CcceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891 307 GVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (725)
Q Consensus 307 ~~~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~ 348 (725)
+.++|.|.|+ |.+|..++..|++.|++|++++++++..+...
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~ 46 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALA 46 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHH
Confidence 3468999987 99999999999999999999999987765443
No 474
>PLN00016 RNA-binding protein; Provisional
Probab=92.81 E-value=0.28 Score=53.82 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=33.4
Q ss_pred CcceEEEE----cC-CCCcHHHHHHHHHCCCcEEEEeCChHH
Q 004891 307 GVRKVAVI----GG-GLMGSGIATAHILNNIYVVLKEVNSEY 343 (725)
Q Consensus 307 ~~~kIaVI----G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~ 343 (725)
.++||.|+ |+ |.+|+.++..|++.||+|++++++++.
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 45789999 76 999999999999999999999998765
No 475
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=92.78 E-value=0.78 Score=47.94 Aligned_cols=35 Identities=31% Similarity=0.381 Sum_probs=32.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHH
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~ 343 (725)
+.|-|||+|+-|+--|..++++|.+|.+|+..+.+
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 56899999999999999999999999999987655
No 476
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=92.77 E-value=0.25 Score=53.48 Aligned_cols=100 Identities=17% Similarity=0.146 Sum_probs=58.1
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccc-cCc-c
Q 004891 309 RKVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY-S 383 (725)
Q Consensus 309 ~kIaVIG~-G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~ 383 (725)
.||+|||+ |.+|..++..|.+. +++++ +++.+...-+...+ .. +.+.. . ....+. .+. +
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~----~~------~~l~~-----~-~~~~~~~~~~~~ 64 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSE----VH------PHLRG-----L-VDLNLEPIDEEE 64 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHH----hC------ccccc-----c-CCceeecCCHHH
Confidence 37999999 99999999999976 66777 55655432111110 00 00000 0 001111 122 2
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 004891 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (725)
Q Consensus 384 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 429 (725)
.+.++|+||.|+|.. .-.++..++. ..++.|+++++...+.
T Consensus 65 ~~~~~DvVf~alP~~--~s~~~~~~~~---~~G~~VIDlS~~fR~~ 105 (346)
T TIGR01850 65 IAEDADVVFLALPHG--VSAELAPELL---AAGVKVIDLSADFRLK 105 (346)
T ss_pred hhcCCCEEEECCCch--HHHHHHHHHH---hCCCEEEeCChhhhcC
Confidence 335899999999944 3345444443 3678888888876543
No 477
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=92.75 E-value=0.43 Score=46.57 Aligned_cols=87 Identities=14% Similarity=0.127 Sum_probs=57.0
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccc--cC----
Q 004891 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV--LD---- 381 (725)
Q Consensus 309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~--~~---- 381 (725)
++|.|||- ...|.++|..|.+.|..|+++|++--..-. ..+.+ +-+.+ .+
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~-------------~~~~~----------~hs~t~~~~~~~~ 119 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFT-------------RGESI----------RHEKHHVTDEEAM 119 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccc-------------ccccc----------ccccccccchhhH
Confidence 68999998 567999999999999999999876432100 00000 00001 11
Q ss_pred c-ccccCCCEEEEeccCChH-HHHHHHHHHHHhCCCCeEEEecCCC
Q 004891 382 Y-SEFKDVDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNTST 425 (725)
Q Consensus 382 ~-~~l~~aDlVIeavpe~~~-~k~~v~~~l~~~~~~~~ii~s~tS~ 425 (725)
+ +.+++||+||.|++-.-- ++. +.+++++++++....
T Consensus 120 l~~~~~~ADIVIsAvG~~~~~i~~-------d~ik~GavVIDVGi~ 158 (197)
T cd01079 120 TLDCLSQSDVVITGVPSPNYKVPT-------ELLKDGAICINFASI 158 (197)
T ss_pred HHHHhhhCCEEEEccCCCCCccCH-------HHcCCCcEEEEcCCC
Confidence 2 467999999999973332 333 346799998875544
No 478
>CHL00194 ycf39 Ycf39; Provisional
Probab=92.75 E-value=0.2 Score=53.51 Aligned_cols=36 Identities=22% Similarity=0.190 Sum_probs=32.3
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHH
Q 004891 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYL 344 (725)
Q Consensus 309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~ 344 (725)
+||.|+|+ |.+|+.++..|.+.|++|++.+|+.+..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~ 37 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKA 37 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHh
Confidence 37999996 9999999999999999999999987653
No 479
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=92.72 E-value=0.27 Score=51.37 Aligned_cols=90 Identities=18% Similarity=0.194 Sum_probs=53.4
Q ss_pred eEEEEcCCCCcHHHHHHHHH-CCCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccc-c-
Q 004891 310 KVAVIGGGLMGSGIATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-F- 385 (725)
Q Consensus 310 kIaVIG~G~mG~~iA~~l~~-~G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l- 385 (725)
||||||+|.||...+..+.+ .+.++. ++|+++++...... .+.| .-...++++. +
T Consensus 3 rVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A---------~~~G------------i~~~~~~~e~ll~ 61 (285)
T TIGR03215 3 KVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARA---------RELG------------VKTSAEGVDGLLA 61 (285)
T ss_pred EEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHH---------HHCC------------CCEEECCHHHHhc
Confidence 79999999999988777765 456765 67888876321111 0112 1111223322 2
Q ss_pred -cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004891 386 -KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (725)
Q Consensus 386 -~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 425 (725)
.+.|+|++|.|..... +... ..+..++.+++.++.
T Consensus 62 ~~dIDaV~iaTp~~~H~--e~a~---~al~aGk~VIdekPa 97 (285)
T TIGR03215 62 NPDIDIVFDATSAKAHA--RHAR---LLAELGKIVIDLTPA 97 (285)
T ss_pred CCCCCEEEECCCcHHHH--HHHH---HHHHcCCEEEECCcc
Confidence 4689999999955443 3222 234456666665553
No 480
>PRK07877 hypothetical protein; Provisional
Probab=92.72 E-value=0.13 Score=60.50 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=28.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCh
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNS 341 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~ 341 (725)
.||+|||+| .|+.+|..|+++|. +++++|.+.
T Consensus 108 ~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ 141 (722)
T PRK07877 108 LRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDT 141 (722)
T ss_pred CCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCE
Confidence 479999999 89999999999995 889998763
No 481
>PRK07825 short chain dehydrogenase; Provisional
Probab=92.71 E-value=0.24 Score=51.47 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=35.0
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (725)
Q Consensus 309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~ 348 (725)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 46 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETA 46 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 57888887 89999999999999999999999998876543
No 482
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=92.68 E-value=1.6 Score=48.99 Aligned_cols=139 Identities=15% Similarity=0.076 Sum_probs=82.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEE-EcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEE
Q 004891 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (725)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl-~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia 103 (725)
.-++.+-..+.+..+.+.+.++. .-+|.| .+. |+.+.+-.. . ...+.+.+.+. ..+... +|.|+
T Consensus 104 gGt~~~~~~~Ki~r~~~~A~~~g-~P~i~l~dsg------Gari~~~v~----~-l~g~g~iF~~~--a~~Sg~-IPqIs 168 (526)
T COG4799 104 GGTLGEMTAKKILRAQELAIENG-LPVIGLNDSG------GARIQEGVP----S-LAGYGRIFYRN--ARASGV-IPQIS 168 (526)
T ss_pred cccccccccchHHHHHHHHHHcC-CCEEEEEccc------ccccccCcc----c-cccchHHHHHH--HHhccC-CCEEE
Confidence 57777777778888887777654 344555 333 333322100 0 11111111111 123444 99999
Q ss_pred EEcccccchhhHHhhhcCEEEeeCCc-eEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHH-------H
Q 004891 104 AVEGLALGGGLELAMGCHARIAAPKT-QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------W 175 (725)
Q Consensus 104 av~G~a~GgG~~lalacD~~ia~~~a-~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA-------~ 175 (725)
+|.|.|.|||..+-..||++|+.+++ ++.+. |+...+ ..||+.++++|. .
T Consensus 169 vv~G~c~gGgaY~pal~D~~imv~~~~~mflt--------------------GP~~ik--~vtGe~V~~e~LGGa~vh~~ 226 (526)
T COG4799 169 VVMGPCAGGGAYSPALTDFVIMVRDQSYMFLT--------------------GPPVIK--AVTGEEVSAEELGGAQVHAR 226 (526)
T ss_pred EEEecCcccccccccccceEEEEcCCccEEee--------------------CHHHHH--hhcCcEeehhhccchhhhcc
Confidence 99999999999999999999999884 22211 222221 246777777653 3
Q ss_pred HcCCcceecCcchHHHHHHHHHHHHHhc
Q 004891 176 KLGLIDAVVTSEELLKVSRLWALDIAAR 203 (725)
Q Consensus 176 ~~Glv~~vv~~~~l~~~a~~~a~~la~~ 203 (725)
..|.+|.+.+.| ..|.++++++.+.
T Consensus 227 ~sGva~~~a~dd---~~Ai~~vr~~lsy 251 (526)
T COG4799 227 KSGVADLLAEDD---EDAIELVRRLLSY 251 (526)
T ss_pred cccceeeeecCH---HHHHHHHHHHHHh
Confidence 458888887544 4566666665544
No 483
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=92.65 E-value=0.34 Score=53.60 Aligned_cols=164 Identities=13% Similarity=0.051 Sum_probs=80.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC------cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcC------cc
Q 004891 310 KVAVIGGGLMGSGIATAHILNNI------YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKM------LK 377 (725)
Q Consensus 310 kIaVIG~G~mG~~iA~~l~~~G~------~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~------i~ 377 (725)
||.|||+|.+|..++..|+..|. +++++|.+.-...... ++-+-+...-|.-..+.+.+.+.. +.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLn---RQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~ 77 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLN---RQFLFRPHDVGKPKSEVAAAAVKAMNPDLKIT 77 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccC---cCccCChhHcCcHHHHHHHHHHHHHCCCCEEE
Confidence 58999999999999999999998 8999997642211100 000000001111111111111110 11
Q ss_pred ccc-------C----cccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEec
Q 004891 378 GVL-------D----YSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHF 446 (725)
Q Consensus 378 ~~~-------~----~~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~ 446 (725)
... . .+-+++.|+||.|+- +.+....+-+.....- -.+|-+.+.+..- ...-..+.....-....
T Consensus 78 a~~~~v~~~~~~~~~~~f~~~~DvVi~alD-n~~aR~~vn~~C~~~~--iPli~~gt~G~~G-~v~v~iP~~te~y~~~~ 153 (435)
T cd01490 78 ALQNRVGPETEHIFNDEFWEKLDGVANALD-NVDARMYVDRRCVYYR--KPLLESGTLGTKG-NTQVVIPHLTESYSSSR 153 (435)
T ss_pred EEecccChhhhhhhhHHHhcCCCEEEECCC-CHHHHHHHHHHHHHhC--CCEEEEeccccee-EEEEEeCCCCCCccCCC
Confidence 000 0 123577999999873 4554433333222221 1133333332211 11111111111112222
Q ss_pred CCCCCCCCeeeEecCCCCCHHHHHHHHHHHHHcC
Q 004891 447 FSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480 (725)
Q Consensus 447 ~~p~~~~~lveii~~~~t~~e~~~~~~~l~~~lG 480 (725)
..|....|..++-.-+...+..++.++.+++.+-
T Consensus 154 ~p~~~~~P~Ctl~~~P~~~eHcI~wA~~~F~~lF 187 (435)
T cd01490 154 DPPEKSIPLCTLKNFPNAIEHTIQWARDEFEGLF 187 (435)
T ss_pred CCCCCCCCCccccCCCCCchHHHHHHHHHHHHHh
Confidence 2233445667777777888899999999998754
No 484
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.63 E-value=0.25 Score=50.14 Aligned_cols=33 Identities=30% Similarity=0.326 Sum_probs=30.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCh
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (725)
.||.|+|+|.+|+.++..|++.|. +++++|.+.
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 479999999999999999999998 899999764
No 485
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=92.61 E-value=0.18 Score=51.55 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=30.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChH
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE 342 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e 342 (725)
.||.|+|+|.+|+.+|..|++.|. +++++|.+.-
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 579999999999999999999997 7888887643
No 486
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=92.57 E-value=0.098 Score=58.15 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=31.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChH
Q 004891 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (725)
Q Consensus 310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e 342 (725)
+|.|||+|.+|.++|..|++.|++|+++|++..
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 799999999999999999999999999999753
No 487
>PRK07831 short chain dehydrogenase; Provisional
Probab=92.54 E-value=0.29 Score=50.55 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=36.8
Q ss_pred cceEEEEcC-C-CCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHH
Q 004891 308 VRKVAVIGG-G-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (725)
Q Consensus 308 ~~kIaVIG~-G-~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i 351 (725)
-+++.|.|+ | .+|.+++..|++.|++|++.+++++.++...+.+
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~ 62 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADEL 62 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 367889997 6 5999999999999999999999988776655443
No 488
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=92.50 E-value=0.3 Score=43.98 Aligned_cols=53 Identities=8% Similarity=0.016 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHh-h-hhhcCCC
Q 004891 244 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFA-Q-RATSKVP 296 (725)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~-~-r~~~~~~ 296 (725)
...+.+.++.+...++++.++.|...-..++..+|+.|||++-+- | +.|+++|
T Consensus 48 l~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~~~DF~EGVRA~LIDKd~~P~W~p 102 (118)
T PF13766_consen 48 LKVTFEQLRRGRNLSLAECLRMEYRLASRCMRHPDFAEGVRALLIDKDKNPKWSP 102 (118)
T ss_dssp HHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHCCSCHHHHHHHHTTS-------SS
T ss_pred HHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCCCC
Confidence 356678899999999999999999999999999999999999876 3 4565555
No 489
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.47 E-value=0.61 Score=47.16 Aligned_cols=40 Identities=25% Similarity=0.267 Sum_probs=35.1
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (725)
Q Consensus 309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~ 348 (725)
++|.|.|+ |.+|..+++.|++.|++|++.+++++.++...
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~ 46 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMK 46 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 57889987 88999999999999999999999988766543
No 490
>PRK05866 short chain dehydrogenase; Provisional
Probab=92.46 E-value=0.23 Score=52.43 Aligned_cols=41 Identities=15% Similarity=0.154 Sum_probs=35.5
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 004891 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (725)
Q Consensus 309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (725)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~ 82 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVAD 82 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 57888887 999999999999999999999999887765543
No 491
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=92.41 E-value=0.3 Score=52.63 Aligned_cols=73 Identities=21% Similarity=0.209 Sum_probs=48.9
Q ss_pred CcceEEEEcCCCC-cHHHHHHHHHCCC---cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc
Q 004891 307 GVRKVAVIGGGLM-GSGIATAHILNNI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (725)
Q Consensus 307 ~~~kIaVIG~G~m-G~~iA~~l~~~G~---~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (725)
.+.||||||+|.+ +...+..+.+.+. -|.++|+++++++...+.+ + .-...+++
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~----------~------------~~~~~~~~ 59 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEF----------G------------IAKAYTDL 59 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHc----------C------------CCcccCCH
Confidence 3578999999854 4567778877663 4668899999977654321 1 11234555
Q ss_pred -cccc--CCCEEEEeccCChHH
Q 004891 383 -SEFK--DVDMVIEAVIESVPL 401 (725)
Q Consensus 383 -~~l~--~aDlVIeavpe~~~~ 401 (725)
+.++ +.|+|++|+|.+...
T Consensus 60 ~~ll~~~~iD~V~Iatp~~~H~ 81 (342)
T COG0673 60 EELLADPDIDAVYIATPNALHA 81 (342)
T ss_pred HHHhcCCCCCEEEEcCCChhhH
Confidence 3343 479999999976665
No 492
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.41 E-value=0.32 Score=50.64 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=53.1
Q ss_pred ceEEEEcCCC-CcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (725)
Q Consensus 309 ~kIaVIG~G~-mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (725)
++|.|||-+. .|.++|..|.+.|..|++++.....+. +.+++
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~ 207 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLK-------------------------------------KYTLD 207 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHH-------------------------------------HHHhh
Confidence 6899999987 999999999999999999885322111 34578
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004891 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (725)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 425 (725)
||+||.|+.-.--++ ...+++++++++..+.
T Consensus 208 ADIvv~AvG~p~~i~-------~~~vk~gavVIDvGin 238 (287)
T PRK14176 208 ADILVVATGVKHLIK-------ADMVKEGAVIFDVGIT 238 (287)
T ss_pred CCEEEEccCCccccC-------HHHcCCCcEEEEeccc
Confidence 999999875222222 2357899998875543
No 493
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=92.37 E-value=0.16 Score=55.49 Aligned_cols=102 Identities=16% Similarity=0.204 Sum_probs=61.1
Q ss_pred CcceEEEEcC-CCCcHHHHHHHHHC-CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccc
Q 004891 307 GVRKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (725)
Q Consensus 307 ~~~kIaVIG~-G~mG~~iA~~l~~~-G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (725)
+.+||+|+|+ |..|..+...|..+ +++|+.+..+...-+...+ .... +..+... .+. ..+.+.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~----~~~~-l~~~~~~---------~~~-~~~~~~ 101 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGS----VFPH-LITQDLP---------NLV-AVKDAD 101 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchh----hCcc-ccCcccc---------cee-cCCHHH
Confidence 4569999999 99999999999988 7799988775433211110 0000 0000000 000 011133
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 004891 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (725)
Q Consensus 385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 429 (725)
++++|+||.|+|. ..-.++...+ ..++.|+++++.....
T Consensus 102 ~~~~DvVf~Alp~--~~s~~i~~~~----~~g~~VIDlSs~fRl~ 140 (381)
T PLN02968 102 FSDVDAVFCCLPH--GTTQEIIKAL----PKDLKIVDLSADFRLR 140 (381)
T ss_pred hcCCCEEEEcCCH--HHHHHHHHHH----hCCCEEEEcCchhccC
Confidence 5889999999984 3434444443 4578888888866544
No 494
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=92.36 E-value=0.26 Score=50.77 Aligned_cols=41 Identities=27% Similarity=0.291 Sum_probs=35.4
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHH
Q 004891 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (725)
Q Consensus 310 kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~ 350 (725)
+|.|.|+ |.+|.++|..|++.|++|++.+++++.++...+.
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~ 43 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKE 43 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence 6788887 8899999999999999999999998887665443
No 495
>PRK07774 short chain dehydrogenase; Provisional
Probab=92.34 E-value=0.24 Score=50.55 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=34.3
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 004891 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (725)
Q Consensus 309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (725)
++|.|.|+ |.+|..++..|++.|++|++.+++++..+..
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~ 46 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERV 46 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 57888887 9999999999999999999999998765554
No 496
>PRK05868 hypothetical protein; Validated
Probab=92.27 E-value=0.1 Score=57.23 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=33.1
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHH
Q 004891 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (725)
Q Consensus 308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~ 343 (725)
|++|.|||+|.-|.+.|..|++.|++|+++|++++.
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 578999999999999999999999999999988653
No 497
>PRK07454 short chain dehydrogenase; Provisional
Probab=92.26 E-value=0.27 Score=49.93 Aligned_cols=41 Identities=15% Similarity=0.113 Sum_probs=35.2
Q ss_pred CcceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 004891 307 GVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (725)
Q Consensus 307 ~~~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (725)
.++++.|.|+ |.+|..++..|++.|++|++.+++++..+..
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 46 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEAL 46 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 3567888886 9999999999999999999999998765543
No 498
>PRK08267 short chain dehydrogenase; Provisional
Probab=92.26 E-value=0.19 Score=51.72 Aligned_cols=40 Identities=15% Similarity=0.133 Sum_probs=35.1
Q ss_pred cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 004891 308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (725)
Q Consensus 308 ~~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (725)
|++|.|+|+ |.+|..++..|++.|++|++++++++.++..
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 41 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAAL 41 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 467889986 9999999999999999999999998876654
No 499
>PRK08328 hypothetical protein; Provisional
Probab=92.17 E-value=0.12 Score=52.43 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=30.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChH
Q 004891 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE 342 (725)
Q Consensus 309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e 342 (725)
.||.|||+|-.|+.+|..|++.|. +++++|.+.-
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v 62 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP 62 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 479999999999999999999998 7899997643
No 500
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.17 E-value=0.37 Score=49.10 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=35.1
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (725)
Q Consensus 309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~ 348 (725)
++|.|+|+ |.+|..++..|++.|++|++.+++++..+...
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~ 46 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVA 46 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 57899987 99999999999999999999999987765543
Done!