Query 004892
Match_columns 724
No_of_seqs 559 out of 4605
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 14:37:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004892.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004892hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02441 fa_ox_alpha_mit fatt 100.0 7E-132 1E-136 1150.2 77.6 699 1-711 10-737 (737)
2 TIGR02437 FadB fatty oxidation 100.0 2E-130 4E-135 1135.9 77.8 697 1-711 1-714 (714)
3 PRK11730 fadB multifunctional 100.0 2E-128 4E-133 1122.8 79.6 697 1-711 1-714 (715)
4 TIGR02440 FadJ fatty oxidation 100.0 5E-128 1E-132 1116.9 77.4 688 6-711 2-699 (699)
5 PRK11154 fadJ multifunctional 100.0 3E-127 6E-132 1113.5 78.0 690 5-712 6-707 (708)
6 TIGR02279 PaaC-3OHAcCoADH 3-hy 100.0 1.6E-74 3.4E-79 643.8 45.4 402 307-712 4-503 (503)
7 PRK08268 3-hydroxy-acyl-CoA de 100.0 3.9E-73 8.4E-78 634.9 45.8 404 305-712 4-504 (507)
8 COG1250 FadB 3-hydroxyacyl-CoA 100.0 1.7E-65 3.6E-70 527.0 31.4 280 307-586 2-285 (307)
9 KOG2304 3-hydroxyacyl-CoA dehy 100.0 1.4E-63 3E-68 470.4 20.0 280 306-585 9-298 (298)
10 KOG1683 Hydroxyacyl-CoA dehydr 100.0 2E-61 4.2E-66 491.3 19.2 378 319-712 1-380 (380)
11 PRK07819 3-hydroxybutyryl-CoA 100.0 2.3E-59 4.9E-64 489.8 32.7 280 305-584 2-286 (286)
12 PRK08293 3-hydroxybutyryl-CoA 100.0 5E-55 1.1E-59 459.6 32.8 279 307-585 2-287 (287)
13 PRK06035 3-hydroxyacyl-CoA deh 100.0 4.6E-54 9.9E-59 453.5 32.9 278 307-584 2-290 (291)
14 PRK09260 3-hydroxybutyryl-CoA 100.0 6.6E-54 1.4E-58 451.6 33.8 280 308-587 1-283 (288)
15 PRK05808 3-hydroxybutyryl-CoA 100.0 8.5E-54 1.8E-58 449.6 32.2 278 307-584 2-282 (282)
16 PLN02545 3-hydroxybutyryl-CoA 100.0 2.1E-53 4.4E-58 449.6 34.3 282 307-588 3-287 (295)
17 PRK07530 3-hydroxybutyryl-CoA 100.0 3.3E-53 7.2E-58 447.4 33.5 282 306-587 2-286 (292)
18 PRK08269 3-hydroxybutyryl-CoA 100.0 1.4E-51 3.1E-56 434.9 31.5 268 319-586 1-284 (314)
19 PRK07066 3-hydroxybutyryl-CoA 100.0 6.8E-52 1.5E-56 434.9 26.0 277 306-586 5-298 (321)
20 KOG1680 Enoyl-CoA hydratase [L 100.0 5.2E-50 1.1E-54 392.2 22.6 250 6-295 38-288 (290)
21 PRK05862 enoyl-CoA hydratase; 100.0 9.7E-49 2.1E-53 404.8 27.7 253 1-294 1-254 (257)
22 PRK07658 enoyl-CoA hydratase; 100.0 9.1E-49 2E-53 405.4 26.9 254 1-294 1-254 (257)
23 PRK06142 enoyl-CoA hydratase; 100.0 1.7E-48 3.6E-53 406.4 26.0 256 1-294 2-270 (272)
24 PRK05980 enoyl-CoA hydratase; 100.0 2E-48 4.3E-53 403.4 26.4 254 1-293 1-259 (260)
25 PRK09076 enoyl-CoA hydratase; 100.0 2.6E-48 5.6E-53 401.5 26.9 251 5-294 4-255 (258)
26 PRK05809 3-hydroxybutyryl-CoA 100.0 3E-48 6.4E-53 402.1 27.1 255 1-294 1-257 (260)
27 PRK06143 enoyl-CoA hydratase; 100.0 3.6E-48 7.8E-53 399.4 27.2 252 1-291 3-256 (256)
28 PRK08150 enoyl-CoA hydratase; 100.0 4.3E-48 9.3E-53 398.6 27.4 252 4-296 2-254 (255)
29 PRK08140 enoyl-CoA hydratase; 100.0 5.1E-48 1.1E-52 400.8 27.5 255 1-294 1-259 (262)
30 PRK08139 enoyl-CoA hydratase; 100.0 8.5E-48 1.8E-52 398.9 27.4 254 2-294 9-263 (266)
31 PRK05995 enoyl-CoA hydratase; 100.0 1.1E-47 2.4E-52 398.3 28.2 255 1-294 1-259 (262)
32 PRK09674 enoyl-CoA hydratase-i 100.0 1.1E-47 2.5E-52 396.1 28.0 251 1-294 1-252 (255)
33 PRK06563 enoyl-CoA hydratase; 100.0 9.2E-48 2E-52 397.0 27.0 251 6-294 1-252 (255)
34 PRK05981 enoyl-CoA hydratase; 100.0 1.1E-47 2.3E-52 399.3 27.1 256 1-294 1-263 (266)
35 PRK05674 gamma-carboxygeranoyl 100.0 1.4E-47 2.9E-52 397.2 27.1 257 1-295 1-262 (265)
36 PRK09245 enoyl-CoA hydratase; 100.0 1.5E-47 3.2E-52 398.2 27.2 255 1-294 1-263 (266)
37 PRK06495 enoyl-CoA hydratase; 100.0 1.4E-47 3.1E-52 395.8 26.9 253 1-294 1-254 (257)
38 PRK08138 enoyl-CoA hydratase; 100.0 2E-47 4.4E-52 395.6 27.9 251 4-294 7-258 (261)
39 PRK07657 enoyl-CoA hydratase; 100.0 1.6E-47 3.4E-52 396.4 27.0 255 1-294 1-257 (260)
40 PRK07468 enoyl-CoA hydratase; 100.0 2.2E-47 4.7E-52 395.6 27.8 256 1-294 1-259 (262)
41 PRK06494 enoyl-CoA hydratase; 100.0 2E-47 4.3E-52 395.1 27.2 252 1-294 1-256 (259)
42 PLN02888 enoyl-CoA hydratase 100.0 3.8E-47 8.2E-52 393.5 29.1 253 3-296 8-263 (265)
43 PRK06210 enoyl-CoA hydratase; 100.0 2.2E-47 4.7E-52 398.3 27.3 256 1-294 2-269 (272)
44 PRK07799 enoyl-CoA hydratase; 100.0 2.8E-47 6E-52 395.3 27.8 253 3-294 4-260 (263)
45 PLN02600 enoyl-CoA hydratase 100.0 1.7E-47 3.8E-52 393.5 25.7 245 12-294 2-248 (251)
46 PRK07511 enoyl-CoA hydratase; 100.0 2.9E-47 6.3E-52 394.7 27.6 255 1-294 1-258 (260)
47 PRK03580 carnitinyl-CoA dehydr 100.0 3E-47 6.5E-52 394.3 27.6 253 1-294 1-258 (261)
48 TIGR02280 PaaB1 phenylacetate 100.0 2.2E-47 4.8E-52 394.4 26.5 250 6-294 1-253 (256)
49 PRK09120 p-hydroxycinnamoyl Co 100.0 3.3E-47 7.2E-52 396.1 27.4 250 4-291 8-264 (275)
50 PRK06127 enoyl-CoA hydratase; 100.0 3.4E-47 7.4E-52 395.3 27.1 254 3-294 10-266 (269)
51 PRK08258 enoyl-CoA hydratase; 100.0 3.7E-47 7.9E-52 396.8 27.3 252 5-294 18-274 (277)
52 PRK08252 enoyl-CoA hydratase; 100.0 5E-47 1.1E-51 391.0 27.7 250 1-294 1-251 (254)
53 PRK07938 enoyl-CoA hydratase; 100.0 3.1E-47 6.6E-52 390.9 25.5 247 6-292 3-249 (249)
54 PLN02664 enoyl-CoA hydratase/d 100.0 4.3E-47 9.3E-52 395.9 26.4 246 12-294 15-272 (275)
55 PRK06688 enoyl-CoA hydratase; 100.0 8.3E-47 1.8E-51 391.5 27.8 251 4-294 5-256 (259)
56 TIGR01929 menB naphthoate synt 100.0 6.9E-47 1.5E-51 390.9 26.1 253 4-294 2-256 (259)
57 PRK07260 enoyl-CoA hydratase; 100.0 1.1E-46 2.4E-51 389.0 27.5 251 3-291 1-255 (255)
58 PLN03214 probable enoyl-CoA hy 100.0 8.4E-47 1.8E-51 393.0 26.8 256 4-296 11-270 (278)
59 PRK07659 enoyl-CoA hydratase; 100.0 7.6E-47 1.7E-51 391.0 25.8 251 4-294 6-257 (260)
60 PRK11423 methylmalonyl-CoA dec 100.0 1.2E-46 2.5E-51 389.3 26.3 253 1-294 1-258 (261)
61 TIGR03210 badI 2-ketocyclohexa 100.0 1.7E-46 3.6E-51 387.3 27.1 252 3-295 1-254 (256)
62 PRK07396 dihydroxynaphthoic ac 100.0 3E-46 6.5E-51 388.8 27.5 253 3-295 12-267 (273)
63 PRK06023 enoyl-CoA hydratase; 100.0 3.6E-46 7.8E-51 384.0 27.2 247 1-289 1-251 (251)
64 PRK08260 enoyl-CoA hydratase; 100.0 2.7E-46 5.9E-51 393.7 26.9 258 1-297 1-278 (296)
65 PRK06144 enoyl-CoA hydratase; 100.0 2.3E-46 4.9E-51 387.6 25.7 250 3-294 7-259 (262)
66 PRK08259 enoyl-CoA hydratase; 100.0 4.1E-46 9E-51 383.7 27.3 248 1-291 1-249 (254)
67 PRK07327 enoyl-CoA hydratase; 100.0 3.8E-46 8.2E-51 387.3 26.7 251 3-294 10-265 (268)
68 PRK06190 enoyl-CoA hydratase; 100.0 7.2E-46 1.6E-50 381.8 28.5 250 1-291 1-254 (258)
69 PRK05870 enoyl-CoA hydratase; 100.0 3.2E-46 6.9E-51 383.9 25.5 247 1-289 1-249 (249)
70 PRK05864 enoyl-CoA hydratase; 100.0 5.7E-46 1.2E-50 387.6 27.1 254 4-294 9-272 (276)
71 TIGR03189 dienoyl_CoA_hyt cycl 100.0 1.3E-45 2.7E-50 379.1 27.0 244 6-294 3-248 (251)
72 PRK12478 enoyl-CoA hydratase; 100.0 2E-45 4.3E-50 386.2 28.3 253 1-295 2-279 (298)
73 COG1024 CaiD Enoyl-CoA hydrata 100.0 1.5E-45 3.3E-50 381.2 26.0 252 2-293 3-256 (257)
74 PRK07509 enoyl-CoA hydratase; 100.0 1.8E-45 3.9E-50 381.9 26.7 251 3-294 2-260 (262)
75 PLN02921 naphthoate synthase 100.0 2.6E-45 5.7E-50 387.6 28.2 254 3-295 64-321 (327)
76 PRK06130 3-hydroxybutyryl-CoA 100.0 1.5E-44 3.3E-49 385.2 31.9 276 307-587 3-285 (311)
77 PRK06072 enoyl-CoA hydratase; 100.0 4.7E-45 1E-49 374.8 26.5 243 6-294 2-245 (248)
78 PF00378 ECH: Enoyl-CoA hydrat 100.0 1.6E-45 3.4E-50 379.0 21.6 243 8-289 2-245 (245)
79 PRK07110 polyketide biosynthes 100.0 1.1E-44 2.4E-49 372.3 27.1 245 1-287 2-247 (249)
80 PRK07854 enoyl-CoA hydratase; 100.0 7.6E-45 1.6E-49 371.8 25.2 238 6-294 2-240 (243)
81 PRK07112 polyketide biosynthes 100.0 1.3E-44 2.7E-49 373.1 26.6 250 1-294 1-252 (255)
82 PRK07827 enoyl-CoA hydratase; 100.0 1.1E-44 2.5E-49 375.1 25.5 250 4-294 6-258 (260)
83 PRK05617 3-hydroxyisobutyryl-C 100.0 8.9E-45 1.9E-49 387.7 23.5 286 4-295 3-324 (342)
84 PRK08321 naphthoate synthase; 100.0 6.7E-44 1.5E-48 375.6 27.4 253 5-295 24-296 (302)
85 PLN02874 3-hydroxyisobutyryl-C 100.0 6.3E-44 1.4E-48 385.5 23.5 290 3-296 10-338 (379)
86 PRK08184 benzoyl-CoA-dihydrodi 100.0 4.2E-43 9.1E-48 392.0 22.6 254 3-294 259-545 (550)
87 TIGR03222 benzo_boxC benzoyl-C 100.0 5.5E-43 1.2E-47 389.4 23.1 254 3-294 255-541 (546)
88 KOG1679 Enoyl-CoA hydratase [L 100.0 1.5E-43 3.1E-48 330.6 12.6 245 12-294 38-288 (291)
89 PLN02157 3-hydroxyisobutyryl-C 100.0 2.6E-42 5.7E-47 371.5 24.3 243 4-287 37-283 (401)
90 PRK05869 enoyl-CoA hydratase; 100.0 1.8E-42 3.9E-47 348.9 21.6 205 3-209 2-210 (222)
91 PRK08290 enoyl-CoA hydratase; 100.0 3.8E-42 8.3E-47 359.9 24.6 238 1-278 1-262 (288)
92 PLN02988 3-hydroxyisobutyryl-C 100.0 1.4E-40 3E-45 357.4 29.4 291 2-296 7-338 (381)
93 PRK06213 enoyl-CoA hydratase; 100.0 3.4E-41 7.5E-46 342.4 21.3 201 1-208 1-202 (229)
94 PRK08788 enoyl-CoA hydratase; 100.0 1.5E-40 3.2E-45 345.1 25.8 243 6-288 19-275 (287)
95 PRK08272 enoyl-CoA hydratase; 100.0 3.4E-40 7.3E-45 348.4 24.9 203 2-209 8-235 (302)
96 PLN02851 3-hydroxyisobutyryl-C 100.0 1.2E-38 2.5E-43 342.9 29.2 281 4-288 42-361 (407)
97 PRK06129 3-hydroxyacyl-CoA deh 100.0 3.5E-38 7.5E-43 335.0 30.5 262 308-569 2-274 (308)
98 TIGR03200 dearomat_oah 6-oxocy 100.0 5.5E-39 1.2E-43 334.6 23.7 274 15-292 38-331 (360)
99 KOG1681 Enoyl-CoA isomerase [L 100.0 1E-39 2.2E-44 307.9 13.2 255 3-294 18-288 (292)
100 PLN02267 enoyl-CoA hydratase/i 100.0 2.3E-38 5E-43 322.6 19.2 197 6-205 2-204 (239)
101 COG0447 MenB Dihydroxynaphthoi 100.0 7.8E-38 1.7E-42 292.9 13.8 252 3-294 17-275 (282)
102 KOG0016 Enoyl-CoA hydratase/is 100.0 2E-36 4.3E-41 294.0 23.7 253 1-290 4-263 (266)
103 PF02737 3HCDH_N: 3-hydroxyacy 100.0 1.3E-36 2.8E-41 295.9 20.4 180 310-489 1-180 (180)
104 PRK07531 bifunctional 3-hydrox 100.0 6E-35 1.3E-39 328.2 27.2 244 307-554 3-254 (495)
105 KOG1682 Enoyl-CoA isomerase [L 100.0 7.4E-36 1.6E-40 276.7 16.0 245 12-294 39-284 (287)
106 TIGR03222 benzo_boxC benzoyl-C 100.0 1.7E-35 3.7E-40 329.5 21.5 202 3-206 10-232 (546)
107 PRK08184 benzoyl-CoA-dihydrodi 100.0 2.2E-35 4.8E-40 330.0 22.1 204 1-206 12-236 (550)
108 cd06558 crotonase-like Crotona 100.0 2.7E-35 5.8E-40 292.7 18.8 192 6-199 1-194 (195)
109 KOG2305 3-hydroxyacyl-CoA dehy 100.0 1.8E-34 3.8E-39 273.2 14.8 229 307-538 2-241 (313)
110 KOG1684 Enoyl-CoA hydratase [L 100.0 2E-30 4.4E-35 261.6 19.0 289 4-295 38-366 (401)
111 PRK08268 3-hydroxy-acyl-CoA de 99.9 4E-26 8.8E-31 256.1 19.4 161 412-572 337-500 (507)
112 PF00725 3HCDH: 3-hydroxyacyl- 99.9 2.6E-24 5.6E-29 188.3 8.8 94 491-584 1-97 (97)
113 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.9 2.2E-21 4.9E-26 217.1 17.3 119 454-572 378-499 (503)
114 PF00725 3HCDH: 3-hydroxyacyl- 99.8 6.5E-20 1.4E-24 160.4 7.6 89 621-713 1-97 (97)
115 KOG2304 3-hydroxyacyl-CoA dehy 99.8 3.7E-19 8.1E-24 169.4 9.3 92 619-714 198-298 (298)
116 cd07014 S49_SppA Signal peptid 99.8 4.2E-18 9.1E-23 166.1 11.5 145 30-192 21-175 (177)
117 COG2084 MmsB 3-hydroxyisobutyr 99.8 9.8E-18 2.1E-22 171.7 14.4 189 309-525 1-210 (286)
118 cd07020 Clp_protease_NfeD_1 No 99.7 6.5E-17 1.4E-21 158.8 13.6 150 16-192 2-172 (187)
119 PRK09260 3-hydroxybutyryl-CoA 99.7 3.3E-17 7.1E-22 172.8 10.6 94 619-716 183-283 (288)
120 PRK07819 3-hydroxybutyryl-CoA 99.7 7.7E-17 1.7E-21 169.0 10.3 91 619-713 188-286 (286)
121 PRK05808 3-hydroxybutyryl-CoA 99.7 1.1E-16 2.4E-21 168.3 10.7 92 618-713 183-282 (282)
122 TIGR01505 tartro_sem_red 2-hyd 99.7 3.5E-16 7.5E-21 165.3 14.3 187 310-526 1-209 (291)
123 PRK11559 garR tartronate semia 99.7 1.1E-15 2.5E-20 161.9 17.6 188 308-526 2-212 (296)
124 COG1250 FadB 3-hydroxyacyl-CoA 99.7 1.1E-16 2.4E-21 165.6 9.4 94 618-715 183-285 (307)
125 PLN02545 3-hydroxybutyryl-CoA 99.6 4.3E-16 9.4E-21 164.9 11.1 94 619-716 185-286 (295)
126 PRK08293 3-hydroxybutyryl-CoA 99.6 6.7E-16 1.5E-20 162.6 10.3 92 619-714 187-287 (287)
127 PRK07530 3-hydroxybutyryl-CoA 99.6 1.1E-15 2.5E-20 161.5 10.5 94 619-716 185-286 (292)
128 PRK07417 arogenate dehydrogena 99.6 6.7E-15 1.5E-19 154.3 15.9 153 310-487 2-166 (279)
129 PRK06035 3-hydroxyacyl-CoA deh 99.6 1.2E-15 2.5E-20 161.2 9.1 91 619-713 187-290 (291)
130 PRK08269 3-hydroxybutyryl-CoA 99.6 2.6E-15 5.6E-20 159.1 10.6 96 620-716 182-285 (314)
131 cd07019 S49_SppA_1 Signal pept 99.6 1.4E-14 3.1E-19 145.0 12.9 156 14-191 1-208 (211)
132 PRK11199 tyrA bifunctional cho 99.6 1.6E-13 3.5E-18 149.2 21.7 171 307-518 97-277 (374)
133 PLN02688 pyrroline-5-carboxyla 99.6 1E-13 2.3E-18 144.6 19.1 185 309-522 1-201 (266)
134 KOG0409 Predicted dehydrogenas 99.5 1.1E-13 2.4E-18 138.9 16.4 186 307-522 34-241 (327)
135 PRK06130 3-hydroxybutyryl-CoA 99.5 1.2E-14 2.6E-19 155.2 10.0 97 620-717 183-286 (311)
136 PRK15461 NADH-dependent gamma- 99.5 4.5E-14 9.8E-19 149.2 13.0 186 308-522 1-206 (296)
137 PRK11154 fadJ multifunctional 99.5 1.8E-14 3.8E-19 169.0 10.4 92 619-716 491-589 (708)
138 TIGR02440 FadJ fatty oxidation 99.5 2.3E-14 5.1E-19 167.5 10.4 92 619-716 486-584 (699)
139 PF03446 NAD_binding_2: NAD bi 99.5 2.8E-14 6.1E-19 137.2 7.5 148 308-488 1-163 (163)
140 PRK11880 pyrroline-5-carboxyla 99.5 9.6E-13 2.1E-17 137.4 19.4 188 308-522 2-202 (267)
141 PRK12491 pyrroline-5-carboxyla 99.5 1.4E-12 3.1E-17 135.6 19.0 153 309-487 3-161 (272)
142 PRK06545 prephenate dehydrogen 99.5 7.9E-13 1.7E-17 143.5 17.0 221 309-553 1-249 (359)
143 PRK07679 pyrroline-5-carboxyla 99.5 1.1E-12 2.4E-17 137.7 17.5 188 308-522 3-206 (279)
144 TIGR01692 HIBADH 3-hydroxyisob 99.5 4.8E-13 1E-17 141.1 14.0 181 313-526 1-206 (288)
145 PRK11730 fadB multifunctional 99.5 1.3E-13 2.8E-18 161.7 10.0 93 618-715 493-594 (715)
146 PRK08507 prephenate dehydrogen 99.5 5.2E-12 1.1E-16 132.3 20.8 151 310-488 2-168 (275)
147 PLN02350 phosphogluconate dehy 99.4 7.6E-13 1.7E-17 146.9 14.7 189 307-522 5-224 (493)
148 PTZ00142 6-phosphogluconate de 99.4 1.6E-12 3.6E-17 144.3 17.3 193 308-523 1-219 (470)
149 TIGR02437 FadB fatty oxidation 99.4 2E-13 4.2E-18 159.8 9.7 92 618-714 493-593 (714)
150 COG0287 TyrA Prephenate dehydr 99.4 2.8E-12 6.1E-17 132.6 16.0 163 308-494 3-178 (279)
151 PRK08655 prephenate dehydrogen 99.4 4.6E-12 9.9E-17 140.5 18.3 160 310-494 2-170 (437)
152 TIGR00705 SppA_67K signal pept 99.4 9.8E-13 2.1E-17 150.2 13.0 167 12-203 307-524 (584)
153 TIGR00872 gnd_rel 6-phosphoglu 99.4 5.9E-12 1.3E-16 133.3 17.9 186 310-522 2-208 (298)
154 cd00394 Clp_protease_like Case 99.4 1.4E-12 3E-17 125.3 11.6 135 28-183 8-161 (161)
155 PRK15059 tartronate semialdehy 99.4 3.6E-12 7.9E-17 134.2 15.7 183 310-522 2-204 (292)
156 PRK12490 6-phosphogluconate de 99.4 3.7E-12 8E-17 135.0 14.7 181 310-523 2-210 (299)
157 cd07022 S49_Sppa_36K_type Sign 99.4 2.4E-12 5.2E-17 129.4 12.3 156 15-191 2-211 (214)
158 PRK09599 6-phosphogluconate de 99.4 4.1E-12 9E-17 134.8 14.8 182 310-523 2-211 (301)
159 PRK11064 wecC UDP-N-acetyl-D-m 99.4 1.9E-11 4.2E-16 134.9 20.3 196 307-522 2-247 (415)
160 PRK07502 cyclohexadienyl dehyd 99.4 6.9E-12 1.5E-16 133.6 16.1 161 307-491 5-183 (307)
161 TIGR02441 fa_ox_alpha_mit fatt 99.4 1.3E-12 2.9E-17 153.2 11.1 103 470-572 625-734 (737)
162 PRK12557 H(2)-dependent methyl 99.4 2.7E-11 5.8E-16 129.5 19.6 205 320-547 32-260 (342)
163 TIGR03026 NDP-sugDHase nucleot 99.4 7.5E-12 1.6E-16 138.6 15.6 201 310-522 2-243 (411)
164 PLN02256 arogenate dehydrogena 99.3 1.3E-11 2.8E-16 130.2 15.4 153 308-487 36-203 (304)
165 TIGR00873 gnd 6-phosphoglucona 99.3 2.6E-11 5.5E-16 134.9 16.0 188 310-523 1-216 (467)
166 PLN02858 fructose-bisphosphate 99.3 2.1E-11 4.5E-16 151.2 16.7 187 308-526 4-217 (1378)
167 cd07016 S14_ClpP_1 Caseinolyti 99.3 6.7E-12 1.5E-16 120.4 9.8 129 31-183 15-160 (160)
168 cd07023 S49_Sppa_N_C Signal pe 99.3 1.4E-11 3.1E-16 123.3 12.6 153 15-190 2-204 (208)
169 TIGR00706 SppA_dom signal pept 99.3 5.5E-11 1.2E-15 118.8 13.4 154 15-195 2-204 (207)
170 PRK07680 late competence prote 99.3 1.5E-10 3.3E-15 121.1 17.1 182 310-522 2-202 (273)
171 COG0345 ProC Pyrroline-5-carbo 99.2 8.1E-11 1.7E-15 120.0 14.1 152 308-486 1-158 (266)
172 PRK05479 ketol-acid reductoiso 99.2 1.9E-10 4.1E-15 121.3 17.3 186 309-520 18-226 (330)
173 PRK15057 UDP-glucose 6-dehydro 99.2 7.1E-11 1.5E-15 128.8 14.6 197 310-522 2-232 (388)
174 cd05297 GH4_alpha_glucosidase_ 99.2 1E-12 2.3E-17 145.2 0.2 160 310-483 2-185 (423)
175 PRK08818 prephenate dehydrogen 99.2 7.8E-11 1.7E-15 126.5 14.3 144 309-494 5-162 (370)
176 PRK06928 pyrroline-5-carboxyla 99.2 1E-10 2.2E-15 122.5 14.8 153 308-485 1-160 (277)
177 PRK00094 gpsA NAD(P)H-dependen 99.2 2E-10 4.2E-15 123.6 17.3 197 308-521 1-238 (325)
178 PLN02858 fructose-bisphosphate 99.2 6.4E-11 1.4E-15 146.9 15.2 190 307-526 323-537 (1378)
179 COG0677 WecC UDP-N-acetyl-D-ma 99.2 6.2E-10 1.3E-14 116.3 19.6 203 309-522 10-250 (436)
180 COG1004 Ugd Predicted UDP-gluc 99.2 1.6E-10 3.4E-15 121.4 15.0 198 309-522 1-241 (414)
181 COG0240 GpsA Glycerol-3-phosph 99.2 1.1E-11 2.4E-16 128.5 5.8 167 308-491 1-181 (329)
182 PRK08229 2-dehydropantoate 2-r 99.2 5.3E-10 1.1E-14 121.1 19.1 168 308-492 2-181 (341)
183 PRK06476 pyrroline-5-carboxyla 99.2 4.4E-10 9.5E-15 116.7 16.9 179 310-522 2-193 (258)
184 PRK15182 Vi polysaccharide bio 99.2 1.6E-10 3.6E-15 127.5 14.2 200 309-522 7-243 (425)
185 PRK07634 pyrroline-5-carboxyla 99.2 7.3E-10 1.6E-14 114.1 18.0 188 308-522 4-206 (245)
186 TIGR00465 ilvC ketol-acid redu 99.2 4.3E-10 9.3E-15 118.9 16.1 202 309-541 4-231 (314)
187 PRK14806 bifunctional cyclohex 99.2 5.1E-10 1.1E-14 133.5 17.1 157 307-487 2-176 (735)
188 TIGR01915 npdG NADPH-dependent 99.1 7.6E-10 1.7E-14 111.8 15.0 162 310-488 2-189 (219)
189 PTZ00431 pyrroline carboxylate 99.1 1.3E-09 2.8E-14 113.1 15.8 144 310-485 5-153 (260)
190 PF01210 NAD_Gly3P_dh_N: NAD-d 99.1 6E-11 1.3E-15 113.3 4.7 105 310-426 1-106 (157)
191 PLN02712 arogenate dehydrogena 99.1 1.1E-09 2.4E-14 127.1 15.4 154 307-487 368-536 (667)
192 PRK14618 NAD(P)H-dependent gly 99.1 6.4E-10 1.4E-14 119.7 12.6 165 309-491 5-181 (328)
193 cd07018 S49_SppA_67K_type Sign 99.1 6.7E-10 1.4E-14 112.3 11.5 146 27-192 25-219 (222)
194 PRK14619 NAD(P)H-dependent gly 99.1 2.4E-09 5.1E-14 114.1 15.1 140 309-491 5-158 (308)
195 PRK07066 3-hydroxybutyryl-CoA 99.1 1.1E-10 2.3E-15 123.5 4.5 85 619-704 186-274 (321)
196 PLN02353 probable UDP-glucose 99.0 1E-08 2.2E-13 114.3 20.1 203 308-522 1-251 (473)
197 PTZ00082 L-lactate dehydrogena 99.0 3.6E-10 7.9E-15 120.2 8.1 126 308-445 6-153 (321)
198 COG2085 Predicted dinucleotide 99.0 4.4E-09 9.5E-14 102.1 14.6 154 308-488 1-180 (211)
199 PF02153 PDH: Prephenate dehyd 99.0 4.1E-09 8.8E-14 109.2 14.4 140 323-486 1-156 (258)
200 cd07021 Clp_protease_NfeD_like 99.0 2.1E-09 4.6E-14 104.1 11.2 145 16-190 2-176 (178)
201 cd01339 LDH-like_MDH L-lactate 99.0 6.7E-10 1.4E-14 117.8 7.2 122 311-444 1-139 (300)
202 TIGR01724 hmd_rel H2-forming N 99.0 4.8E-08 1E-12 100.6 20.0 147 320-487 32-193 (341)
203 PRK06223 malate dehydrogenase; 99.0 1.3E-09 2.8E-14 116.2 8.8 125 308-444 2-143 (307)
204 PTZ00117 malate dehydrogenase; 99.0 1.4E-09 3E-14 115.9 8.4 125 309-445 6-147 (319)
205 PLN02712 arogenate dehydrogena 99.0 1.1E-08 2.4E-13 118.9 16.4 153 308-487 52-219 (667)
206 PRK09287 6-phosphogluconate de 98.9 5.6E-09 1.2E-13 115.8 12.9 179 319-523 1-208 (459)
207 PF03721 UDPG_MGDP_dh_N: UDP-g 98.9 3.7E-09 8.1E-14 103.4 8.8 113 309-428 1-124 (185)
208 PF03807 F420_oxidored: NADP o 98.9 3.2E-09 7E-14 92.4 6.6 91 310-424 1-95 (96)
209 PRK12439 NAD(P)H-dependent gly 98.9 1.8E-08 4E-13 108.7 13.5 176 307-497 6-193 (341)
210 PF10727 Rossmann-like: Rossma 98.8 1.7E-08 3.7E-13 91.7 9.1 114 309-446 11-127 (127)
211 PTZ00345 glycerol-3-phosphate 98.8 1.3E-08 2.7E-13 109.7 8.8 107 309-427 12-133 (365)
212 TIGR03376 glycerol3P_DH glycer 98.8 1.4E-08 3.1E-13 108.5 9.1 108 310-429 1-122 (342)
213 COG1023 Gnd Predicted 6-phosph 98.8 1.7E-07 3.7E-12 91.4 14.4 184 309-522 1-209 (300)
214 PRK14620 NAD(P)H-dependent gly 98.7 9.7E-08 2.1E-12 102.7 12.1 105 310-426 2-109 (326)
215 PRK12921 2-dehydropantoate 2-r 98.7 7.3E-07 1.6E-11 95.0 18.2 167 310-491 2-180 (305)
216 PRK06249 2-dehydropantoate 2-r 98.7 1.7E-06 3.6E-11 92.5 20.9 177 307-498 4-196 (313)
217 TIGR01763 MalateDH_bact malate 98.7 4.7E-08 1E-12 103.5 8.2 122 309-444 2-142 (305)
218 COG0362 Gnd 6-phosphogluconate 98.6 5.8E-07 1.3E-11 93.9 14.6 190 308-525 3-222 (473)
219 PRK06522 2-dehydropantoate 2-r 98.6 3.7E-07 8E-12 97.2 13.7 111 310-435 2-113 (304)
220 PRK06444 prephenate dehydrogen 98.6 5.8E-07 1.3E-11 88.4 13.4 113 310-486 2-119 (197)
221 cd00650 LDH_MDH_like NAD-depen 98.6 7.4E-08 1.6E-12 100.2 7.2 97 311-421 1-117 (263)
222 PRK12480 D-lactate dehydrogena 98.5 4.9E-07 1.1E-11 96.8 9.1 100 309-436 147-249 (330)
223 COG4007 Predicted dehydrogenas 98.4 1E-05 2.2E-10 79.8 16.6 147 320-487 33-194 (340)
224 cd07015 Clp_protease_NfeD Nodu 98.4 3.4E-06 7.5E-11 80.9 13.3 141 27-189 9-169 (172)
225 PF00056 Ldh_1_N: lactate/mala 98.4 7E-07 1.5E-11 83.5 7.9 101 309-423 1-118 (141)
226 PRK06129 3-hydroxyacyl-CoA deh 98.4 9.9E-07 2.1E-11 94.0 9.9 85 620-705 186-274 (308)
227 cd07013 S14_ClpP Caseinolytic 98.4 1.6E-06 3.6E-11 83.0 9.8 130 28-183 9-162 (162)
228 TIGR00112 proC pyrroline-5-car 98.3 1.3E-05 2.9E-10 82.3 16.1 165 332-522 10-184 (245)
229 cd05291 HicDH_like L-2-hydroxy 98.3 8.9E-07 1.9E-11 94.2 7.3 98 309-420 1-114 (306)
230 KOG1683 Hydroxyacyl-CoA dehydr 98.3 4.1E-07 8.8E-12 94.6 4.4 170 13-186 65-240 (380)
231 TIGR02354 thiF_fam2 thiamine b 98.3 1.3E-06 2.9E-11 86.5 7.4 104 309-420 22-142 (200)
232 PRK10949 protease 4; Provision 98.3 5.6E-06 1.2E-10 95.1 13.0 162 12-195 325-538 (618)
233 PF07991 IlvN: Acetohydroxy ac 98.3 5.2E-06 1.1E-10 77.5 10.2 93 309-428 5-99 (165)
234 PRK13403 ketol-acid reductoiso 98.2 3.1E-06 6.7E-11 88.3 7.8 86 309-420 17-103 (335)
235 PRK00277 clpP ATP-dependent Cl 98.2 9E-06 2E-10 80.6 10.7 135 26-186 38-196 (200)
236 cd05293 LDH_1 A subgroup of L- 98.2 3E-06 6.5E-11 89.9 7.7 98 309-419 4-117 (312)
237 PRK13243 glyoxylate reductase; 98.2 5.6E-06 1.2E-10 88.9 9.8 101 309-435 151-254 (333)
238 PRK05708 2-dehydropantoate 2-r 98.2 1.2E-05 2.5E-10 85.6 11.4 176 309-499 3-187 (305)
239 PRK15076 alpha-galactosidase; 98.2 6.3E-06 1.4E-10 91.3 9.6 77 308-396 1-84 (431)
240 COG1893 ApbA Ketopantoate redu 98.2 0.00016 3.4E-09 76.7 19.7 166 309-488 1-176 (307)
241 cd05292 LDH_2 A subgroup of L- 98.1 3.2E-06 6.9E-11 89.9 6.5 96 310-419 2-113 (308)
242 PLN02602 lactate dehydrogenase 98.1 4.4E-06 9.5E-11 89.8 7.2 98 309-419 38-151 (350)
243 PRK07574 formate dehydrogenase 98.1 2.5E-05 5.3E-10 84.9 12.4 104 309-436 193-299 (385)
244 PRK06436 glycerate dehydrogena 98.1 2.8E-05 6E-10 82.1 12.5 134 309-471 123-267 (303)
245 PLN03139 formate dehydrogenase 98.1 2.8E-05 6.2E-10 84.4 12.4 129 309-461 200-340 (386)
246 PRK00066 ldh L-lactate dehydro 98.1 6.3E-06 1.4E-10 87.8 7.2 97 309-420 7-119 (315)
247 cd00300 LDH_like L-lactate deh 98.1 5.6E-06 1.2E-10 87.7 6.7 97 311-421 1-113 (300)
248 PRK15469 ghrA bifunctional gly 98.0 3.5E-05 7.5E-10 81.9 12.0 102 309-436 137-241 (312)
249 PRK08605 D-lactate dehydrogena 98.0 7E-06 1.5E-10 88.2 6.7 93 309-428 147-241 (332)
250 cd01065 NAD_bind_Shikimate_DH 98.0 7.1E-06 1.5E-10 78.0 5.8 106 309-434 20-127 (155)
251 KOG2711 Glycerol-3-phosphate d 98.0 1.3E-05 2.7E-10 82.7 7.6 112 307-428 20-144 (372)
252 PRK12553 ATP-dependent Clp pro 98.0 4.9E-05 1.1E-09 75.7 11.6 136 26-186 42-202 (207)
253 cd07017 S14_ClpP_2 Caseinolyti 98.0 3.1E-05 6.8E-10 74.9 9.9 131 28-183 18-171 (171)
254 COG0039 Mdh Malate/lactate deh 98.0 1.3E-05 2.7E-10 83.8 6.8 102 309-423 1-118 (313)
255 cd05290 LDH_3 A subgroup of L- 98.0 1.6E-05 3.4E-10 84.3 7.3 99 310-421 1-117 (307)
256 PF02558 ApbA: Ketopantoate re 97.9 3E-05 6.6E-10 73.3 8.5 111 311-435 1-114 (151)
257 cd05294 LDH-like_MDH_nadp A la 97.9 2E-05 4.3E-10 83.8 6.4 123 309-444 1-145 (309)
258 KOG2380 Prephenate dehydrogena 97.9 0.00022 4.7E-09 73.3 13.3 151 309-486 53-218 (480)
259 TIGR01327 PGDH D-3-phosphoglyc 97.9 7.5E-05 1.6E-09 85.3 11.2 103 309-436 139-244 (525)
260 PRK12319 acetyl-CoA carboxylas 97.8 0.00039 8.5E-09 71.1 14.5 138 26-186 77-214 (256)
261 PF02826 2-Hacid_dh_C: D-isome 97.8 1.2E-05 2.6E-10 78.4 3.4 103 309-436 37-142 (178)
262 PRK05442 malate dehydrogenase; 97.8 3.4E-05 7.4E-10 82.3 6.3 105 308-425 4-132 (326)
263 PRK14512 ATP-dependent Clp pro 97.8 0.00017 3.6E-09 71.2 10.6 138 27-190 31-193 (197)
264 COG0111 SerA Phosphoglycerate 97.8 0.00014 3.1E-09 77.3 10.7 101 309-436 143-248 (324)
265 TIGR01759 MalateDH-SF1 malate 97.8 4.8E-05 1E-09 81.0 7.1 103 309-424 4-130 (323)
266 PRK13581 D-3-phosphoglycerate 97.8 0.0001 2.2E-09 84.2 10.0 128 309-462 141-279 (526)
267 PLN03230 acetyl-coenzyme A car 97.7 0.00096 2.1E-08 71.5 16.4 138 26-186 200-337 (431)
268 CHL00028 clpP ATP-dependent Cl 97.7 0.00043 9.4E-09 68.3 12.9 136 27-187 38-197 (200)
269 PLN02928 oxidoreductase family 97.7 0.00016 3.4E-09 78.2 10.7 115 309-436 160-277 (347)
270 PLN00112 malate dehydrogenase 97.7 7.7E-05 1.7E-09 82.1 8.4 102 309-424 101-227 (444)
271 PRK05225 ketol-acid reductoiso 97.7 0.0017 3.7E-08 70.7 18.3 185 309-520 37-251 (487)
272 COG0616 SppA Periplasmic serin 97.7 0.00022 4.8E-09 75.9 11.5 160 14-196 60-272 (317)
273 PRK11778 putative inner membra 97.7 0.00028 6.1E-09 74.5 11.9 160 12-194 89-294 (330)
274 PF00574 CLP_protease: Clp pro 97.7 4.2E-05 9.1E-10 74.9 5.4 140 18-185 19-180 (182)
275 CHL00198 accA acetyl-CoA carbo 97.7 0.00086 1.9E-08 70.2 15.1 137 26-185 133-269 (322)
276 KOG3124 Pyrroline-5-carboxylat 97.7 0.00021 4.5E-09 71.3 9.7 150 310-483 2-156 (267)
277 PRK14194 bifunctional 5,10-met 97.7 7.3E-05 1.6E-09 77.9 6.3 71 309-423 160-231 (301)
278 KOG2666 UDP-glucose/GDP-mannos 97.7 0.00066 1.4E-08 69.1 12.8 201 308-522 1-251 (481)
279 TIGR01772 MDH_euk_gproteo mala 97.6 0.0001 2.2E-09 78.1 7.2 116 310-444 1-144 (312)
280 TIGR01757 Malate-DH_plant mala 97.6 0.00015 3.2E-09 78.7 8.3 102 309-424 45-171 (387)
281 TIGR00493 clpP ATP-dependent C 97.6 0.00064 1.4E-08 66.9 11.9 136 27-185 34-190 (191)
282 TIGR02853 spore_dpaA dipicolin 97.6 0.00011 2.5E-09 77.0 6.7 89 309-424 152-241 (287)
283 TIGR00513 accA acetyl-CoA carb 97.6 0.0026 5.7E-08 66.6 16.3 137 26-185 130-266 (316)
284 cd01337 MDH_glyoxysomal_mitoch 97.6 0.00014 3.1E-09 76.9 7.1 97 310-425 2-119 (310)
285 PF00670 AdoHcyase_NAD: S-aden 97.5 0.00023 4.9E-09 67.2 7.2 98 309-434 24-124 (162)
286 TIGR01771 L-LDH-NAD L-lactate 97.5 8E-05 1.7E-09 78.7 4.6 95 313-421 1-111 (299)
287 PLN00106 malate dehydrogenase 97.5 0.00011 2.3E-09 78.3 5.5 117 309-444 19-163 (323)
288 cd01338 MDH_choloroplast_like 97.5 7.5E-05 1.6E-09 79.7 4.3 100 309-423 3-128 (322)
289 PRK08410 2-hydroxyacid dehydro 97.5 0.00047 1E-08 73.4 10.2 109 309-447 146-258 (311)
290 PRK11790 D-3-phosphoglycerate 97.5 0.00041 9E-09 76.6 10.0 100 309-436 152-254 (409)
291 PRK05724 acetyl-CoA carboxylas 97.5 0.0044 9.6E-08 65.0 16.7 137 26-185 130-266 (319)
292 cd00704 MDH Malate dehydrogena 97.5 7.2E-05 1.6E-09 79.8 3.6 100 310-423 2-126 (323)
293 PLN03229 acetyl-coenzyme A car 97.5 0.0046 1E-07 70.5 17.9 138 26-186 221-358 (762)
294 PRK07531 bifunctional 3-hydrox 97.5 0.00036 7.8E-09 79.3 8.9 70 619-689 183-253 (495)
295 PRK15409 bifunctional glyoxyla 97.4 0.00074 1.6E-08 72.2 10.7 102 309-436 146-251 (323)
296 PRK14514 ATP-dependent Clp pro 97.4 0.0019 4E-08 64.6 12.4 133 26-185 61-218 (221)
297 PRK00257 erythronate-4-phospha 97.4 0.00013 2.9E-09 79.2 4.4 110 309-447 117-234 (381)
298 PRK05654 acetyl-CoA carboxylas 97.4 0.0078 1.7E-07 62.9 17.2 162 12-203 119-283 (292)
299 PTZ00325 malate dehydrogenase; 97.4 0.00017 3.6E-09 76.7 5.0 97 306-421 6-123 (321)
300 PRK13304 L-aspartate dehydroge 97.4 0.0006 1.3E-08 70.9 8.8 78 309-411 2-83 (265)
301 PRK13302 putative L-aspartate 97.4 0.00088 1.9E-08 69.9 9.7 80 307-410 5-88 (271)
302 PRK06487 glycerate dehydrogena 97.4 0.00085 1.8E-08 71.6 9.8 97 309-436 149-248 (317)
303 PRK06141 ornithine cyclodeamin 97.3 0.00043 9.4E-09 73.9 7.5 91 309-423 126-219 (314)
304 PRK12551 ATP-dependent Clp pro 97.3 0.0019 4.1E-08 63.5 11.4 134 27-186 33-190 (196)
305 PRK06932 glycerate dehydrogena 97.3 0.0014 3.1E-08 69.8 11.2 109 309-447 148-260 (314)
306 PRK08306 dipicolinate synthase 97.3 0.00074 1.6E-08 71.4 8.8 90 309-425 153-243 (296)
307 PF01972 SDH_sah: Serine dehyd 97.3 0.0034 7.4E-08 63.5 12.8 99 23-145 67-165 (285)
308 cd01075 NAD_bind_Leu_Phe_Val_D 97.3 0.0017 3.8E-08 64.4 10.7 39 309-347 29-67 (200)
309 cd05197 GH4_glycoside_hydrolas 97.3 0.0013 2.8E-08 72.9 10.6 122 309-444 1-165 (425)
310 PF02056 Glyco_hydro_4: Family 97.3 0.002 4.3E-08 62.4 10.6 74 310-395 1-81 (183)
311 cd01487 E1_ThiF_like E1_ThiF_l 97.3 0.00064 1.4E-08 66.0 7.3 95 310-412 1-112 (174)
312 PF01488 Shikimate_DH: Shikima 97.3 0.00024 5.3E-09 65.9 4.1 74 308-399 12-87 (135)
313 PRK14188 bifunctional 5,10-met 97.3 0.00054 1.2E-08 71.6 7.0 71 309-424 159-231 (296)
314 TIGR00515 accD acetyl-CoA carb 97.3 0.01 2.3E-07 61.7 16.3 159 13-201 119-280 (285)
315 PRK14513 ATP-dependent Clp pro 97.2 0.0033 7.1E-08 62.0 11.7 135 26-187 34-193 (201)
316 KOG1495 Lactate dehydrogenase 97.2 0.0013 2.8E-08 65.9 8.7 105 308-426 20-140 (332)
317 TIGR01758 MDH_euk_cyt malate d 97.2 0.00069 1.5E-08 72.4 7.4 101 310-424 1-126 (324)
318 PRK15438 erythronate-4-phospha 97.2 0.00035 7.5E-09 75.8 4.3 110 309-447 117-234 (378)
319 PF01343 Peptidase_S49: Peptid 97.1 0.0011 2.5E-08 62.9 7.3 102 94-196 2-150 (154)
320 PRK04148 hypothetical protein; 97.1 0.0042 9.1E-08 56.9 10.3 94 309-423 18-111 (134)
321 cd05213 NAD_bind_Glutamyl_tRNA 97.1 0.0012 2.5E-08 70.5 7.8 92 309-423 179-273 (311)
322 cd05296 GH4_P_beta_glucosidase 97.1 0.0017 3.7E-08 71.8 9.2 121 309-444 1-165 (419)
323 TIGR03134 malonate_gamma malon 97.1 0.012 2.6E-07 59.6 14.4 142 27-188 44-191 (238)
324 KOG2653 6-phosphogluconate deh 97.1 0.013 2.7E-07 61.1 14.3 194 308-525 6-226 (487)
325 COG0059 IlvC Ketol-acid reduct 97.1 0.0077 1.7E-07 61.7 12.5 87 308-420 18-106 (338)
326 TIGR03133 malonate_beta malona 97.1 0.058 1.2E-06 55.8 19.1 139 25-187 72-218 (274)
327 COG1052 LdhA Lactate dehydroge 97.0 0.0011 2.4E-08 70.6 6.6 90 309-424 147-236 (324)
328 TIGR02371 ala_DH_arch alanine 97.0 0.0015 3.3E-08 70.0 7.8 93 309-425 129-224 (325)
329 TIGR00745 apbA_panE 2-dehydrop 97.0 0.0046 9.9E-08 65.3 11.4 104 318-435 1-106 (293)
330 COG1748 LYS9 Saccharopine dehy 97.0 0.00098 2.1E-08 72.0 6.2 79 308-400 1-81 (389)
331 cd00401 AdoHcyase S-adenosyl-L 97.0 0.0024 5.1E-08 70.1 9.1 86 309-423 203-289 (413)
332 PRK14179 bifunctional 5,10-met 97.0 0.0012 2.6E-08 68.4 6.4 70 309-423 159-230 (284)
333 PRK05476 S-adenosyl-L-homocyst 97.0 0.0017 3.6E-08 71.5 7.7 87 309-424 213-300 (425)
334 TIGR00936 ahcY adenosylhomocys 97.0 0.0019 4E-08 70.7 8.0 86 309-423 196-282 (406)
335 PLN02306 hydroxypyruvate reduc 97.0 0.0014 3E-08 71.6 6.9 117 309-436 166-287 (386)
336 cd05298 GH4_GlvA_pagL_like Gly 96.9 0.0044 9.6E-08 68.8 10.6 99 309-420 1-140 (437)
337 PRK13301 putative L-aspartate 96.9 0.007 1.5E-07 61.8 11.0 76 309-411 3-84 (267)
338 PRK08644 thiamine biosynthesis 96.9 0.0016 3.5E-08 65.3 5.9 32 309-340 29-61 (212)
339 CHL00174 accD acetyl-CoA carbo 96.9 0.064 1.4E-06 55.7 17.5 140 25-198 146-291 (296)
340 PRK11861 bifunctional prephena 96.8 0.016 3.6E-07 68.4 14.8 102 391-494 1-118 (673)
341 PRK12549 shikimate 5-dehydroge 96.8 0.0024 5.3E-08 67.0 7.0 72 309-396 128-201 (284)
342 COG4091 Predicted homoserine d 96.8 0.014 3.1E-07 60.7 12.1 158 309-488 18-185 (438)
343 cd01336 MDH_cytoplasmic_cytoso 96.8 0.0019 4.1E-08 69.2 6.0 101 309-424 3-129 (325)
344 PRK07189 malonate decarboxylas 96.8 0.086 1.9E-06 55.1 17.7 96 25-133 81-182 (301)
345 KOG0069 Glyoxylate/hydroxypyru 96.8 0.0039 8.4E-08 65.9 7.8 98 307-429 161-259 (336)
346 COG0569 TrkA K+ transport syst 96.8 0.0086 1.9E-07 60.6 10.1 92 309-420 1-98 (225)
347 PRK05086 malate dehydrogenase; 96.8 0.003 6.5E-08 67.3 7.1 95 309-421 1-116 (312)
348 TIGR00507 aroE shikimate 5-deh 96.7 0.0032 6.9E-08 65.8 7.1 41 309-349 118-158 (270)
349 smart00859 Semialdhyde_dh Semi 96.7 0.0076 1.6E-07 54.7 8.6 100 310-428 1-104 (122)
350 PTZ00075 Adenosylhomocysteinas 96.7 0.0033 7.2E-08 69.6 7.1 88 309-427 255-344 (476)
351 PRK08618 ornithine cyclodeamin 96.7 0.005 1.1E-07 66.1 8.3 93 309-425 128-223 (325)
352 cd01078 NAD_bind_H4MPT_DH NADP 96.7 0.0041 8.9E-08 61.5 7.1 41 309-349 29-70 (194)
353 PRK07340 ornithine cyclodeamin 96.7 0.0055 1.2E-07 65.1 8.3 91 309-425 126-219 (304)
354 PRK12552 ATP-dependent Clp pro 96.6 0.029 6.3E-07 56.0 12.7 142 28-186 49-214 (222)
355 cd01080 NAD_bind_m-THF_DH_Cycl 96.6 0.0046 1E-07 59.4 6.8 76 309-428 45-121 (168)
356 COG1712 Predicted dinucleotide 96.6 0.0084 1.8E-07 58.9 8.5 91 310-427 2-96 (255)
357 TIGR01035 hemA glutamyl-tRNA r 96.6 0.0028 6E-08 70.4 5.8 39 309-347 181-220 (417)
358 COG1030 NfeD Membrane-bound se 96.6 0.029 6.2E-07 60.8 13.1 147 12-185 25-187 (436)
359 TIGR01921 DAP-DH diaminopimela 96.6 0.016 3.5E-07 61.3 11.0 124 309-499 4-133 (324)
360 PLN02494 adenosylhomocysteinas 96.6 0.0039 8.5E-08 68.8 6.6 87 309-424 255-342 (477)
361 TIGR00705 SppA_67K signal pept 96.6 0.035 7.6E-07 64.2 14.7 105 12-134 41-161 (584)
362 TIGR02992 ectoine_eutC ectoine 96.6 0.0057 1.2E-07 65.7 7.8 73 309-398 130-205 (326)
363 PRK00258 aroE shikimate 5-dehy 96.5 0.0055 1.2E-07 64.3 7.2 70 309-397 124-195 (278)
364 COG0740 ClpP Protease subunit 96.5 0.021 4.5E-07 55.7 10.4 142 18-188 30-194 (200)
365 PRK00961 H(2)-dependent methyl 96.5 0.065 1.4E-06 54.1 14.0 113 379-494 133-250 (342)
366 PF01118 Semialdhyde_dh: Semia 96.5 0.0028 6.1E-08 57.5 4.0 99 310-429 1-103 (121)
367 PRK08291 ectoine utilization p 96.5 0.008 1.7E-07 64.7 8.0 73 309-398 133-208 (330)
368 PRK06718 precorrin-2 dehydroge 96.4 0.035 7.7E-07 55.2 11.9 129 309-478 11-142 (202)
369 PRK09310 aroDE bifunctional 3- 96.3 0.0062 1.4E-07 68.8 6.7 70 309-399 333-402 (477)
370 COG1486 CelF Alpha-galactosida 96.3 0.025 5.3E-07 61.8 10.8 76 308-395 3-85 (442)
371 COG2910 Putative NADH-flavin r 96.3 0.0059 1.3E-07 58.1 5.2 70 309-396 1-71 (211)
372 TIGR01809 Shik-DH-AROM shikima 96.3 0.0081 1.8E-07 63.1 6.9 41 309-349 126-167 (282)
373 TIGR00518 alaDH alanine dehydr 96.3 0.0078 1.7E-07 65.7 6.9 39 309-347 168-206 (370)
374 TIGR01117 mmdA methylmalonyl-C 96.3 0.085 1.8E-06 59.9 15.4 166 16-201 317-496 (512)
375 PF13460 NAD_binding_10: NADH( 96.3 0.0077 1.7E-07 58.6 6.0 96 311-424 1-100 (183)
376 PRK06407 ornithine cyclodeamin 96.2 0.012 2.7E-07 62.2 7.9 93 309-424 118-213 (301)
377 PRK10949 protease 4; Provision 96.2 0.045 9.9E-07 63.4 12.9 85 32-134 96-180 (618)
378 PRK00045 hemA glutamyl-tRNA re 96.2 0.0048 1E-07 68.8 4.6 39 309-347 183-222 (423)
379 PLN02819 lysine-ketoglutarate 96.2 0.026 5.7E-07 68.6 11.0 44 305-348 566-623 (1042)
380 PF01113 DapB_N: Dihydrodipico 96.2 0.011 2.5E-07 53.8 6.3 102 310-432 2-107 (124)
381 TIGR01470 cysG_Nterm siroheme 96.2 0.025 5.5E-07 56.3 9.2 131 309-479 10-143 (205)
382 PF01408 GFO_IDH_MocA: Oxidore 96.1 0.032 6.9E-07 50.2 9.0 77 310-411 2-84 (120)
383 COG2423 Predicted ornithine cy 96.1 0.017 3.6E-07 61.5 8.0 91 308-421 130-223 (330)
384 PRK06046 alanine dehydrogenase 96.1 0.015 3.3E-07 62.4 7.6 92 309-424 130-224 (326)
385 PRK06823 ornithine cyclodeamin 96.1 0.019 4.1E-07 61.2 8.1 93 309-425 129-224 (315)
386 PLN00203 glutamyl-tRNA reducta 96.0 0.0052 1.1E-07 69.6 4.0 83 309-409 267-352 (519)
387 TIGR02356 adenyl_thiF thiazole 96.0 0.013 2.8E-07 58.4 5.9 32 309-340 22-54 (202)
388 TIGR01723 hmd_TIGR 5,10-methen 95.9 0.24 5.1E-06 50.4 14.6 106 379-487 131-240 (340)
389 COG0169 AroE Shikimate 5-dehyd 95.9 0.018 3.9E-07 60.0 7.0 43 309-351 127-170 (283)
390 PRK13940 glutamyl-tRNA reducta 95.9 0.009 2E-07 66.0 5.0 68 309-396 182-251 (414)
391 PRK14175 bifunctional 5,10-met 95.9 0.023 5E-07 59.2 7.6 72 309-424 159-231 (286)
392 PF02254 TrkA_N: TrkA-N domain 95.8 0.056 1.2E-06 48.3 9.2 92 311-420 1-94 (116)
393 PF03059 NAS: Nicotianamine sy 95.8 0.025 5.5E-07 58.4 7.6 99 309-422 122-229 (276)
394 COG0373 HemA Glutamyl-tRNA red 95.8 0.012 2.5E-07 64.2 5.2 41 309-349 179-220 (414)
395 COG1064 AdhP Zn-dependent alco 95.8 0.26 5.6E-06 52.5 15.0 41 309-349 168-208 (339)
396 cd05191 NAD_bind_amino_acid_DH 95.8 0.031 6.8E-07 47.3 6.8 32 308-339 23-55 (86)
397 PRK00048 dihydrodipicolinate r 95.8 0.026 5.6E-07 58.4 7.5 92 309-429 2-97 (257)
398 PRK13303 L-aspartate dehydroge 95.8 0.024 5.1E-07 59.0 7.2 78 309-410 2-82 (265)
399 PRK07589 ornithine cyclodeamin 95.7 0.038 8.2E-07 59.5 8.6 95 309-425 130-227 (346)
400 COG0686 Ald Alanine dehydrogen 95.6 0.035 7.7E-07 57.2 7.6 92 309-421 169-266 (371)
401 PF03435 Saccharop_dh: Sacchar 95.6 0.014 3E-07 64.4 5.3 39 311-349 1-41 (386)
402 PF01039 Carboxyl_trans: Carbo 95.5 0.21 4.5E-06 56.8 14.2 137 25-197 70-217 (493)
403 PF02423 OCD_Mu_crystall: Orni 95.5 0.013 2.8E-07 62.5 4.2 93 309-425 129-226 (313)
404 PRK00683 murD UDP-N-acetylmura 95.5 0.063 1.4E-06 59.9 9.8 38 307-344 2-39 (418)
405 PRK12475 thiamine/molybdopteri 95.5 0.03 6.4E-07 60.3 6.9 33 309-341 25-58 (338)
406 PRK06719 precorrin-2 dehydroge 95.4 0.14 3.1E-06 48.6 10.7 31 309-339 14-44 (157)
407 PRK14192 bifunctional 5,10-met 95.4 0.037 8E-07 57.9 7.2 69 309-421 160-229 (283)
408 PRK09424 pntA NAD(P) transhydr 95.4 0.021 4.6E-07 64.4 5.4 41 309-349 166-206 (509)
409 PRK09496 trkA potassium transp 95.2 0.089 1.9E-06 59.3 10.1 39 309-347 1-39 (453)
410 KOG2305 3-hydroxyacyl-CoA dehy 95.2 0.012 2.5E-07 57.7 2.4 53 620-673 188-240 (313)
411 TIGR00561 pntA NAD(P) transhyd 95.1 0.062 1.4E-06 60.5 8.2 40 309-348 165-204 (511)
412 COG0825 AccA Acetyl-CoA carbox 95.1 0.054 1.2E-06 55.2 6.8 85 92-186 182-266 (317)
413 PRK06199 ornithine cyclodeamin 95.1 0.042 9E-07 60.1 6.6 74 308-396 155-232 (379)
414 TIGR01117 mmdA methylmalonyl-C 95.1 0.65 1.4E-05 52.9 16.2 139 25-200 95-243 (512)
415 PRK14027 quinate/shikimate deh 95.0 0.045 9.7E-07 57.4 6.4 42 309-350 128-170 (283)
416 COG0300 DltE Short-chain dehyd 95.0 0.072 1.6E-06 54.8 7.7 49 306-354 4-53 (265)
417 PRK10669 putative cation:proto 95.0 0.1 2.2E-06 60.6 9.8 94 309-420 418-513 (558)
418 cd05311 NAD_bind_2_malic_enz N 95.0 0.13 2.8E-06 52.1 9.4 32 309-340 26-60 (226)
419 PF00070 Pyr_redox: Pyridine n 95.0 0.034 7.4E-07 46.2 4.3 35 310-344 1-35 (80)
420 cd01483 E1_enzyme_family Super 95.0 0.098 2.1E-06 48.8 7.9 32 310-341 1-33 (143)
421 PLN02820 3-methylcrotonyl-CoA 95.0 0.73 1.6E-05 52.9 16.3 147 18-201 133-291 (569)
422 PRK12409 D-amino acid dehydrog 94.9 0.02 4.2E-07 63.7 3.7 34 308-341 1-34 (410)
423 PRK03659 glutathione-regulated 94.9 0.11 2.5E-06 60.5 10.0 95 309-421 401-497 (601)
424 PRK07688 thiamine/molybdopteri 94.9 0.072 1.6E-06 57.4 7.6 33 309-341 25-58 (339)
425 PRK09496 trkA potassium transp 94.8 0.17 3.8E-06 56.9 10.9 41 308-348 231-271 (453)
426 PRK06153 hypothetical protein; 94.8 0.055 1.2E-06 58.3 6.3 32 309-340 177-209 (393)
427 PF13380 CoA_binding_2: CoA bi 94.8 0.071 1.5E-06 47.9 6.2 79 309-419 1-84 (116)
428 PRK14189 bifunctional 5,10-met 94.8 0.068 1.5E-06 55.6 6.8 71 309-423 159-230 (285)
429 PRK12548 shikimate 5-dehydroge 94.7 0.042 9.1E-07 58.0 5.2 34 309-342 127-161 (289)
430 PRK00436 argC N-acetyl-gamma-g 94.7 0.1 2.2E-06 56.4 8.2 100 308-429 2-105 (343)
431 PRK02318 mannitol-1-phosphate 94.6 0.043 9.4E-07 60.3 5.2 40 309-348 1-41 (381)
432 cd01484 E1-2_like Ubiquitin ac 94.6 0.12 2.5E-06 52.6 7.8 160 310-477 1-177 (234)
433 PRK12550 shikimate 5-dehydroge 94.4 0.087 1.9E-06 54.9 6.7 40 309-348 123-163 (272)
434 PRK12749 quinate/shikimate deh 94.4 0.073 1.6E-06 56.0 6.0 34 309-342 125-159 (288)
435 PRK08300 acetaldehyde dehydrog 94.3 0.91 2E-05 47.8 13.9 97 309-426 5-104 (302)
436 PLN03075 nicotianamine synthas 94.3 0.34 7.4E-06 50.7 10.7 101 308-423 124-233 (296)
437 TIGR00036 dapB dihydrodipicoli 94.0 0.15 3.3E-06 53.1 7.5 32 309-340 2-36 (266)
438 PF13241 NAD_binding_7: Putati 94.0 0.11 2.4E-06 45.6 5.4 73 309-410 8-82 (103)
439 PRK03562 glutathione-regulated 94.0 0.26 5.7E-06 57.7 10.2 94 309-420 401-496 (621)
440 cd00757 ThiF_MoeB_HesA_family 93.9 0.1 2.2E-06 53.1 5.8 33 309-341 22-55 (228)
441 PRK12829 short chain dehydroge 93.9 0.28 6.1E-06 50.5 9.3 39 309-347 12-51 (264)
442 PRK14191 bifunctional 5,10-met 93.8 0.13 2.8E-06 53.5 6.4 71 309-423 158-229 (285)
443 cd01490 Ube1_repeat2 Ubiquitin 93.8 0.2 4.4E-06 55.3 8.4 163 310-479 1-186 (435)
444 PRK05562 precorrin-2 dehydroge 93.8 0.46 1E-05 47.7 10.2 130 309-478 26-158 (223)
445 TIGR03736 PRTRC_ThiF PRTRC sys 93.8 0.14 2.9E-06 52.3 6.5 98 309-411 12-129 (244)
446 PRK12828 short chain dehydroge 93.8 0.11 2.4E-06 52.4 6.1 39 309-347 8-47 (239)
447 cd00755 YgdL_like Family of ac 93.8 0.19 4.1E-06 51.0 7.5 33 309-341 12-45 (231)
448 COG1648 CysG Siroheme synthase 93.8 1 2.2E-05 44.9 12.6 130 309-478 13-145 (210)
449 KOG0068 D-3-phosphoglycerate d 93.8 0.63 1.4E-05 48.8 11.1 87 309-421 147-234 (406)
450 PF02882 THF_DHG_CYH_C: Tetrah 93.7 0.12 2.5E-06 49.2 5.5 73 309-425 37-110 (160)
451 COG0777 AccD Acetyl-CoA carbox 93.7 0.73 1.6E-05 46.8 11.1 149 26-204 136-285 (294)
452 cd05212 NAD_bind_m-THF_DH_Cycl 93.7 0.17 3.7E-06 47.0 6.4 72 309-424 29-101 (140)
453 PRK07326 short chain dehydroge 93.6 0.15 3.3E-06 51.6 6.6 40 309-348 7-47 (237)
454 PRK05690 molybdopterin biosynt 93.5 0.14 3E-06 52.6 6.0 33 309-341 33-66 (245)
455 PRK05597 molybdopterin biosynt 93.5 0.053 1.1E-06 58.9 3.0 33 309-341 29-62 (355)
456 PRK01438 murD UDP-N-acetylmura 93.4 0.22 4.7E-06 56.7 8.1 46 296-342 5-50 (480)
457 PF01039 Carboxyl_trans: Carbo 93.4 0.51 1.1E-05 53.7 10.9 166 18-203 298-481 (493)
458 PRK08762 molybdopterin biosynt 93.4 0.06 1.3E-06 59.1 3.3 32 309-340 136-168 (376)
459 COG0136 Asd Aspartate-semialde 93.4 0.4 8.6E-06 50.8 9.1 146 309-485 2-155 (334)
460 PRK05600 thiamine biosynthesis 93.3 0.064 1.4E-06 58.5 3.4 32 309-340 42-74 (370)
461 PRK14178 bifunctional 5,10-met 93.3 0.23 4.9E-06 51.6 7.2 72 309-424 153-225 (279)
462 PRK03369 murD UDP-N-acetylmura 93.3 0.51 1.1E-05 53.7 10.8 35 309-343 13-47 (488)
463 PRK10792 bifunctional 5,10-met 93.3 0.21 4.4E-06 52.0 6.8 71 309-423 160-231 (285)
464 PRK08223 hypothetical protein; 93.2 0.24 5.1E-06 51.7 7.2 33 309-341 28-61 (287)
465 COG1063 Tdh Threonine dehydrog 93.2 0.31 6.8E-06 52.9 8.5 40 310-349 171-211 (350)
466 TIGR02355 moeB molybdopterin s 93.2 0.14 3E-06 52.4 5.4 34 309-342 25-59 (240)
467 PRK04207 glyceraldehyde-3-phos 93.1 0.36 7.9E-06 52.1 8.7 106 309-425 2-111 (341)
468 PF12847 Methyltransf_18: Meth 93.1 0.56 1.2E-05 41.2 8.7 96 309-422 3-110 (112)
469 PLN02968 Probable N-acetyl-gam 93.1 0.11 2.3E-06 56.9 4.7 102 307-429 37-140 (381)
470 PLN03209 translocon at the inn 93.0 0.47 1E-05 54.3 9.8 41 309-349 81-122 (576)
471 PRK15116 sulfur acceptor prote 93.0 0.21 4.6E-06 51.7 6.5 33 309-341 31-64 (268)
472 PLN00016 RNA-binding protein; 93.0 0.25 5.3E-06 54.3 7.5 37 307-343 51-92 (378)
473 CHL00194 ycf39 Ycf39; Provisio 93.0 0.16 3.6E-06 54.2 5.9 35 310-344 2-37 (317)
474 PRK14106 murD UDP-N-acetylmura 93.0 0.91 2E-05 51.1 12.2 34 308-341 5-38 (450)
475 COG0499 SAM1 S-adenosylhomocys 93.0 0.29 6.2E-06 51.7 7.3 88 309-425 210-297 (420)
476 TIGR01850 argC N-acetyl-gamma- 92.9 0.2 4.3E-06 54.3 6.4 100 309-429 1-105 (346)
477 cd01079 NAD_bind_m-THF_DH NAD 92.9 0.39 8.4E-06 46.9 7.7 88 308-425 62-158 (197)
478 PRK00711 D-amino acid dehydrog 92.9 0.085 1.8E-06 58.7 3.7 33 310-342 2-34 (416)
479 cd05295 MDH_like Malate dehydr 92.9 0.25 5.4E-06 54.8 7.1 100 309-422 124-249 (452)
480 PRK07825 short chain dehydroge 92.8 0.24 5.2E-06 51.5 6.8 40 309-348 6-46 (273)
481 PRK07454 short chain dehydroge 92.8 0.23 4.9E-06 50.5 6.5 41 307-347 5-46 (241)
482 PRK05868 hypothetical protein; 92.8 0.081 1.8E-06 58.0 3.3 36 308-343 1-36 (372)
483 cd01076 NAD_bind_1_Glu_DH NAD( 92.8 0.17 3.6E-06 51.3 5.2 31 309-339 32-63 (227)
484 PRK07831 short chain dehydroge 92.8 0.28 6E-06 50.7 7.1 44 308-351 17-62 (262)
485 PRK07236 hypothetical protein; 92.7 0.11 2.3E-06 57.3 4.2 37 306-342 4-40 (386)
486 PRK07774 short chain dehydroge 92.7 0.22 4.9E-06 50.8 6.2 40 309-348 7-47 (250)
487 PRK08328 hypothetical protein; 92.6 0.11 2.3E-06 53.0 3.6 35 309-343 28-63 (231)
488 cd01486 Apg7 Apg7 is an E1-lik 92.6 0.046 1E-06 57.0 1.0 31 310-340 1-32 (307)
489 PRK14176 bifunctional 5,10-met 92.6 0.28 6.1E-06 51.1 6.7 72 309-424 165-237 (287)
490 PF13450 NAD_binding_8: NAD(P) 92.6 0.098 2.1E-06 42.1 2.6 30 313-342 1-30 (68)
491 PRK08267 short chain dehydroge 92.5 0.18 3.9E-06 51.9 5.3 40 308-347 1-41 (260)
492 PRK06196 oxidoreductase; Provi 92.5 0.29 6.4E-06 52.2 7.1 42 309-350 27-69 (315)
493 PRK07231 fabG 3-ketoacyl-(acyl 92.5 0.34 7.5E-06 49.3 7.3 40 309-348 6-46 (251)
494 KOG0022 Alcohol dehydrogenase, 92.5 2.2 4.8E-05 44.5 12.7 88 309-409 194-283 (375)
495 PRK14874 aspartate-semialdehyd 92.4 0.19 4.2E-06 54.1 5.5 93 309-428 2-99 (334)
496 cd05211 NAD_bind_Glu_Leu_Phe_V 92.3 0.33 7.1E-06 48.8 6.7 33 309-341 24-57 (217)
497 COG1206 Gid NAD(FAD)-utilizing 92.3 1 2.2E-05 47.2 10.1 35 309-343 4-38 (439)
498 PRK05866 short chain dehydroge 92.3 0.27 5.9E-06 51.9 6.4 41 309-349 41-82 (293)
499 PRK07890 short chain dehydroge 92.3 0.29 6.2E-06 50.3 6.5 41 309-349 6-47 (258)
500 PRK06057 short chain dehydroge 92.3 0.25 5.5E-06 50.7 6.0 40 308-347 7-47 (255)
No 1
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=6.7e-132 Score=1150.19 Aligned_cols=699 Identities=34% Similarity=0.544 Sum_probs=621.6
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEE-EEEcCCCCccCCCCchhhhhccCCC
Q 004892 1 MAAPRVTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAI-VLTGNGGRFSGGFDINVFQKVHGAG 77 (724)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~--~Nal~~~~~~~l~~~l~~~~~d~~v~~v-Vl~g~g~~F~aG~Dl~~~~~~~~~~ 77 (724)
|+++++.++. +++|++||||||+ .|+||.+|+++|.+++++++.|+++|++ |+||.|++||+|+|++++.......
T Consensus 10 ~~~~~~~~~~-~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~ 88 (737)
T TIGR02441 10 MARTHRHYEV-KGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQ 88 (737)
T ss_pred CCCCeEEEEE-ECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChH
Confidence 6778899998 8899999999995 6999999999999999999999999975 5699999999999999986421111
Q ss_pred cccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCC--ceeeCcccccCccCCcchhhhhccccc
Q 004892 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPGFGGTQRLPRLVG 155 (724)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~G~~P~~g~~~~l~r~~G 155 (724)
+...+....++++ .+|.++||||||+|||+|+|||++|+|+||||||+++ ++|++||+++|++|++|++++|||++|
T Consensus 89 ~~~~~~~~~~~l~-~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG 167 (737)
T TIGR02441 89 EVTQLSQEGQEMF-ERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTG 167 (737)
T ss_pred HHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhC
Confidence 1222223344566 6799999999999999999999999999999999987 589999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHCCCcceecCc-------------chHHHHHHHHHHHHHccCchhhhhhhccCCCCCc--
Q 004892 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-------------EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL-- 220 (724)
Q Consensus 156 ~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~-- 220 (724)
..+|++|+++|++++|+||+++||||+|||+ +++.+.+.+++.+++..+....+......+....
T Consensus 168 ~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (737)
T TIGR02441 168 VPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVHKITQYVM 247 (737)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcccCCccccccccCccchhhc
Confidence 9999999999999999999999999999987 5578888888888765432221111000111010
Q ss_pred ---HHHHHHHHHHHHH-HHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004892 221 ---SEAREVLKLARLQ-AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (724)
Q Consensus 221 ---~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~~ 296 (724)
......+..++.+ .++++++||||.+++++++.+...+++++++.|++.|.+++.|++++++++.|+.+|..+|.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~~~~~~~~ 327 (737)
T TIGR02441 248 TNPFVRQQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTFESKALIGLFHGQTDCKKNK 327 (737)
T ss_pred ccchhHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCC
Confidence 1123344444444 457888899999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCc
Q 004892 297 NVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML 376 (724)
Q Consensus 297 ~~~~~~~~~~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i 376 (724)
. +..+++++||+|||+|+||++||..++.+|++|+++|++++.++++.+++++.+++.+++|.+++.+.+..+++|
T Consensus 328 ~----~~~~~~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i 403 (737)
T TIGR02441 328 F----GKPQRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNL 403 (737)
T ss_pred C----CCCCCcccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCe
Confidence 3 223468999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCee
Q 004892 377 KGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLL 456 (724)
Q Consensus 377 ~~~~~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lv 456 (724)
+++++++++++||+|||||||+.++|+++|+++++++++++||+||||++++++++..+.+|+||+|+|||+|++.+++|
T Consensus 404 ~~~~~~~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~Lv 483 (737)
T TIGR02441 404 TPTLDYSGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLL 483 (737)
T ss_pred EEeCCHHHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHH
Q 004892 457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLD 536 (724)
Q Consensus 457 eii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv~~~~ID~a~~~~g~~~Gp~~~~D 536 (724)
||++++.|++++++++..|++.+||+||+++|+||||+||++.+|++||++++++|+++++||.++.++|||||||+++|
T Consensus 484 Evv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGFi~NRi~~~~~~ea~~lv~eGv~~~~ID~a~~~~G~p~GP~~l~D 563 (737)
T TIGR02441 484 EIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGVDPKKLDKLTTKFGFPVGAATLAD 563 (737)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHHhCCCCCC--CcHHHHHHHHcCCCCcccCccceeccCCC--CCCCCCCchhHHHHHhhhccCCCC
Q 004892 537 LAGYGVAAATSKEFDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYEKGS--KPKPDPSVLPIIEECRRLSNIMPG 612 (724)
Q Consensus 537 ~~Gld~~~~~~~~l~~~~~~~~~--~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 612 (724)
.+|||+++++.+.+++.+++++. |++++++|+++|++|+|||+|||+|++++ ++..++++..++..... .|.
T Consensus 564 ~vGld~~~~v~~~l~~~~~~~~~~~~~~~l~~~v~~G~~G~k~G~GfY~y~~~~~~~~~~~~~v~~~~~~~~k----~p~ 639 (737)
T TIGR02441 564 EVGVDVAEHVAEDLGKAFGERFGGGSAELLSELVKAGFLGRKSGKGIFIYQEGKKGSKKVNSDADEILAQYKL----PPK 639 (737)
T ss_pred HhhHHHHHHHHHHHHHhcCcccccccCHHHHHHHHCCCCcccCCCeeEEcCCCCCCcCCCCHHHHHHHHHhcc----Ccc
Confidence 99999999999999999887653 68999999999999999999999998654 35677777666644321 111
Q ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCC
Q 004892 613 GKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN 692 (724)
Q Consensus 613 ~~~~~~~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~ 692 (724)
....++++|+||++++++|||++||+|||+.+++|||.+|++|+|||+|+||||+|+|.+|++++++.++.+++.+|+
T Consensus 640 --~~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~v~~~~~~l~~~~g~ 717 (737)
T TIGR02441 640 --AEVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKLVDKMEKYAAAYGV 717 (737)
T ss_pred --cccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHHhCC
Confidence 113578999999999999999999999997799999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHc-CCCCC
Q 004892 693 FFKPSRFLEERATK-GIPLS 711 (724)
Q Consensus 693 ~~~p~~~l~~~~k~-g~gfy 711 (724)
+|+|+++|++|+++ |++||
T Consensus 718 ~~~p~~lL~~~~~~~g~~f~ 737 (737)
T TIGR02441 718 QFTPCQLLLDHAKSPGKKFY 737 (737)
T ss_pred CcCCCHHHHHHHHhcCCCCC
Confidence 99999999999999 99997
No 2
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=2.1e-130 Score=1135.90 Aligned_cols=697 Identities=31% Similarity=0.529 Sum_probs=618.0
Q ss_pred CCCC--cEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCC
Q 004892 1 MAAP--RVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG 77 (724)
Q Consensus 1 M~~~--~v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~ 77 (724)
|++. ++.++..+++|++|||||| +.|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus 1 ~~~~~~~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~ 80 (714)
T TIGR02437 1 MIYQGKTIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALP 80 (714)
T ss_pred CCcccceEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCC
Confidence 5554 5777754689999999999 589999999999999999999999999999999999999999999986421111
Q ss_pred --cccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhccccc
Q 004892 78 --DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (724)
Q Consensus 78 --~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G 155 (724)
....+....++++ ++|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|
T Consensus 81 ~~~~~~~~~~~~~~~-~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG 159 (714)
T TIGR02437 81 DAELIQWLLFANSIF-NKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIG 159 (714)
T ss_pred HHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhC
Confidence 1112223344566 6799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCC----cHHHHHHHHHHH
Q 004892 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGS----LSEAREVLKLAR 231 (724)
Q Consensus 156 ~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 231 (724)
..+|++|+++|++++|+||+++||||+++|++++.+++.+++.++......+.+. +..+... .......+...+
T Consensus 160 ~~~A~~llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 237 (714)
T TIGR02437 160 ADNALEWIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLDWKAK--RQPKLEPLKLSKIEAMMSFTTAK 237 (714)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCCccccc--CCCCcccccccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998866543221111 1111111 111111233334
Q ss_pred H-HHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCcce
Q 004892 232 L-QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRK 310 (724)
Q Consensus 232 ~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~~~~~~~~~~~~~~~k 310 (724)
. ..++++++||||..++++++++...+++++++.|++.|.+++.|+++++++++|+.+|..++.+. ..+..+++++|
T Consensus 238 ~~~~~~~~~~~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r~~~~~~~--~~~~~~~~i~~ 315 (714)
T TIGR02437 238 GMVAQVAGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQYVKGKAK--KADKIAKDVKQ 315 (714)
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhHhhcCCCC--CCCCCccccce
Confidence 4 44578899999999999999999999999999999999999999999999999999999987642 11234578999
Q ss_pred EEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCCE
Q 004892 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM 390 (724)
Q Consensus 311 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl 390 (724)
|+|||+|+||++||..++.+|++|+++|++++.++++.+++++.++..+++|.+++++.+..+++|+++++++++++||+
T Consensus 316 v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl 395 (714)
T TIGR02437 316 AAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDI 395 (714)
T ss_pred EEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCCHHHHH
Q 004892 391 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVIL 470 (724)
Q Consensus 391 VIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~ 470 (724)
|||||||++++|+++|+++++++++++||+||||++++++++..+.+|+||+|+|||||++.+++|||++++.|++++++
T Consensus 396 ViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~ 475 (714)
T TIGR02437 396 VVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIA 475 (714)
T ss_pred EEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHH
Q 004892 471 DLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKE 549 (724)
Q Consensus 471 ~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv~~~~ID~a~-~~~g~~~Gp~~~~D~~Gld~~~~~~~~ 549 (724)
.+.++++.+||+||+++|+||||+||++.++++||++|+++|+++++||+++ .++|||||||+++|.+|||+.+++.+.
T Consensus 476 ~~~~~~~~lgk~pv~v~d~pGfi~NRl~~~~~~ea~~l~~eG~~~~~ID~a~~~~~G~p~GPf~l~D~~Gld~~~~i~~~ 555 (714)
T TIGR02437 476 TVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFVRIDKVMEKQFGWPMGPAYLLDVVGIDTGHHAQAV 555 (714)
T ss_pred HHHHHHHHcCCEEEEeCCcccchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhcCCCccCHHHHHHhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred HHHhCCCCCC--CcHHHHHHHHcCCCCcccCccceeccCCC----CCCCCCCchhHHHHHhhhccCCCCCCCcccCHHHH
Q 004892 550 FDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYEKGS----KPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEI 623 (724)
Q Consensus 550 l~~~~~~~~~--~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 623 (724)
++..++++.. +++++++|+++|++|+|||+|||+|+++. ++.+|+++..++...+. + ...+++++|
T Consensus 556 ~~~~~~~~~~~~~~~~l~~~v~~G~lG~K~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~i 627 (714)
T TIGR02437 556 MAEGFPDRMGKDGRDAIDALFEAKRLGQKNGKGFYAYEADKKGKPKKLVDSSVLELLKPVVY-----E---QRDFDDEEI 627 (714)
T ss_pred HHHhcCcccccchhHHHHHHHHCCCCcccCCCEEEecccCcCccccCCCCHHHHHHHHHhhc-----c---cCCCCHHHH
Confidence 9998887642 46899999999999999999999997431 24456666555543321 1 124678899
Q ss_pred HHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCCCCCCCHHHHHH
Q 004892 624 VEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEER 703 (724)
Q Consensus 624 ~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~ 703 (724)
+||++++++||+++|++|||+.+++|||.++++|+|||+|+||||+|+|.+|++++++.++.+. .++++|+|+++|++|
T Consensus 628 ~~Rll~~~~nEa~~ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~Gl~~~~~~~~~~~-~~g~~~~p~~~l~~~ 706 (714)
T TIGR02437 628 IARMMIPMINETVRCLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIGVANFVALADQYA-ELGALYQVTAKLREM 706 (714)
T ss_pred HHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHH-HhCCCCCCCHHHHHH
Confidence 9999999999999999999777999999999999999999999999999999999999999765 788999999999999
Q ss_pred HHcCCCCC
Q 004892 704 ATKGIPLS 711 (724)
Q Consensus 704 ~k~g~gfy 711 (724)
+++|++||
T Consensus 707 ~~~g~~f~ 714 (714)
T TIGR02437 707 AKNGQSFY 714 (714)
T ss_pred HHcCCCCC
Confidence 99999997
No 3
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=2e-128 Score=1122.76 Aligned_cols=697 Identities=33% Similarity=0.555 Sum_probs=616.9
Q ss_pred CCCC--cEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCC
Q 004892 1 MAAP--RVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG 77 (724)
Q Consensus 1 M~~~--~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~ 77 (724)
|++. ++.++..+++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus 1 ~~~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~ 80 (715)
T PRK11730 1 MIYQGKTLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAP 80 (715)
T ss_pred CCcccceEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCC
Confidence 6654 57777436899999999995 79999999999999999999999999999999999999999999876421111
Q ss_pred --cccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhccccc
Q 004892 78 --DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (724)
Q Consensus 78 --~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G 155 (724)
....+.....+++ .+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|
T Consensus 81 ~~~~~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG 159 (715)
T PRK11730 81 EEELSQWLHFANSIF-NRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIG 159 (715)
T ss_pred HHHHHHHHHHHHHHH-HHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcC
Confidence 1112222334455 6689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCc----HHHHHHHHHHH
Q 004892 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL----SEAREVLKLAR 231 (724)
Q Consensus 156 ~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 231 (724)
..+|++|++||++++|+||+++||||+|||++++++++.++|++++..+..+... +....+.. ......+...+
T Consensus 160 ~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~--~~~~~~p~a~~~~~~~~~~~~~k 237 (715)
T PRK11730 160 ADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKAR--RQPKLEPLKLSKIEAMMSFTTAK 237 (715)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCccccc--cCcccccccccchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999775322211 11111111 11122233333
Q ss_pred HH-HHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCcce
Q 004892 232 LQ-AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRK 310 (724)
Q Consensus 232 ~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~~~~~~~~~~~~~~~k 310 (724)
+. .|+++++||++..++++++.+...+++++++.|.+.|..++.|+|+++++++|+++|..++.+.. .....+.|+|
T Consensus 238 ~~~~~~~~~~~pa~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~~~~~~~~--~~~~~~~i~~ 315 (715)
T PRK11730 238 GMVAQKAGKHYPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQYVKGKAKK--LAKDAKPVKQ 315 (715)
T ss_pred HHHHHhhccCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCC--CCCCccccce
Confidence 32 36788999999999999999999999999999999999999999999999999999999876522 1134467999
Q ss_pred EEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCCE
Q 004892 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM 390 (724)
Q Consensus 311 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl 390 (724)
|+|||+|+||.+||..++.+|++|+++|++++.++++.+++++.+++.+++|.+++.+.+..+++|+++++++++++||+
T Consensus 316 v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl 395 (715)
T PRK11730 316 AAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFERVDV 395 (715)
T ss_pred EEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCCHHHHH
Q 004892 391 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVIL 470 (724)
Q Consensus 391 VIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~ 470 (724)
|||||||++++|+++|+++++++++++||+||||++++++++..+.+|+||+|+|||+|++.+++|||++++.|++++++
T Consensus 396 ViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~ 475 (715)
T PRK11730 396 VVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIA 475 (715)
T ss_pred EEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHH
Q 004892 471 DLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKE 549 (724)
Q Consensus 471 ~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv~~~~ID~a~-~~~g~~~Gp~~~~D~~Gld~~~~~~~~ 549 (724)
.+..|++.+||.||+++|+||||+||++.++++|+++++++|++++|||.++ .++|||+|||+++|.+|||+++++.+.
T Consensus 476 ~~~~~~~~lgk~pv~v~d~pGfv~nRi~~~~~~ea~~lv~~Ga~~e~ID~a~~~~~G~~~GP~~~~D~~Gld~~~~~~~~ 555 (715)
T PRK11730 476 TVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAV 555 (715)
T ss_pred HHHHHHHHhCCceEEecCcCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCccCHHHHHHhhchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred HHHhCCCCCC--CcHHHHHHHHcCCCCcccCccceeccCCC----CCCCCCCchhHHHHHhhhccCCCCCCCcccCHHHH
Q 004892 550 FDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYEKGS----KPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEI 623 (724)
Q Consensus 550 l~~~~~~~~~--~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 623 (724)
++..++++.. +++++++||++|++|+|||+|||+|+++. +..+++.+..++..... + ...+++++|
T Consensus 556 ~~~~~~~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~i 627 (715)
T PRK11730 556 MAEGFPDRMKKDYRDAIDVLFEAKRFGQKNGKGFYRYEEDKKGKPKKEVDPAVYELLAPVVQ-----P---KREFSDEEI 627 (715)
T ss_pred HHHhcCCccccchhHHHHHHHHCCCCccccCCEeEecccCCCcccccCCCHHHHHHHHHhcc-----c---cCCCCHHHH
Confidence 9998887643 56899999999999999999999997532 23345555555443211 0 124678899
Q ss_pred HHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCCCCCCCHHHHHH
Q 004892 624 VEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEER 703 (724)
Q Consensus 624 ~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~ 703 (724)
.||++.+++|||++|+++||+.+|+|||.+|++|+|||+|+||||+++|.+|+|+++++++.+. .++++|+|+++|++|
T Consensus 628 ~nRll~~~~~Ea~~ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~Gld~~~~~~~~~~-~~~~~~~p~~~L~~~ 706 (715)
T PRK11730 628 IARMMIPMINEVVRCLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLGVANYVALADKYA-HLGPLYQVPEGLREM 706 (715)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhCHHHHHHHHHHHH-HcCCCCCCCHHHHHH
Confidence 9999999999999999999855999999999999999999999999999999999999999875 588899999999999
Q ss_pred HHcCCCCC
Q 004892 704 ATKGIPLS 711 (724)
Q Consensus 704 ~k~g~gfy 711 (724)
+++|++||
T Consensus 707 v~~~~~f~ 714 (715)
T PRK11730 707 AANGESYY 714 (715)
T ss_pred HHcCCCCC
Confidence 99999997
No 4
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=5e-128 Score=1116.91 Aligned_cols=688 Identities=34% Similarity=0.583 Sum_probs=607.7
Q ss_pred EEEEEecCcEEEEEeCCC-C-CCCCCHHHHHHHHHHHHHHhcCCCceEEEE-EcCCCCccCCCCchhhhhccCCCccccc
Q 004892 6 VTMEVGNDGVAIITLINP-P-VNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (724)
Q Consensus 6 v~~~~~~~~v~~i~l~~p-~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl-~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (724)
++++..+++|++|||||| + .|+||.+|+++|.+++++++.|+++|+||| +|.|++||+|+|++++.......+...+
T Consensus 2 ~~~~~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~ 81 (699)
T TIGR02440 2 FTLTVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKAL 81 (699)
T ss_pred eEEEEcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHH
Confidence 344444789999999999 3 699999999999999999999999999987 6888999999999998542111111122
Q ss_pred chhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCC--ceeeCcccccCccCCcchhhhhcccccHHHHH
Q 004892 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (724)
Q Consensus 83 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~ 160 (724)
....+.++ ..|.++||||||+|||+|+|||++|+|+||||||+++ ++|++||+++|++|++|++++|+|++|..+|+
T Consensus 82 ~~~~~~~~-~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~ 160 (699)
T TIGR02440 82 AQQGQVLF-AELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTAL 160 (699)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHH
Confidence 23344556 6799999999999999999999999999999999976 79999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCC--CCcHHHHHHHHHHHH-HHHHh
Q 004892 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKL--GSLSEAREVLKLARL-QAKKT 237 (724)
Q Consensus 161 ~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~ 237 (724)
+|+++|++++|+||+++||||+|+|++++++++.++|++. ..+. +......++ .+.......+....+ ..+++
T Consensus 161 ~llltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~--~~~~--~~~~~~~~~~~~~~~a~~~~~~~~~k~~~~~~ 236 (699)
T TIGR02440 161 DMILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKG--KPIR--KPLSLQERLLEGTPLGRALLFDQAAKKTAKKT 236 (699)
T ss_pred HHHHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhC--CCCC--CCccchhhhcccCchhHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999741 0000 000000000 000111112222233 34578
Q ss_pred CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCcceEEEEcCC
Q 004892 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGG 317 (724)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~~~~~~~~~~~~~~~kI~VIG~G 317 (724)
+++|||+..+|++++.+...+++++++.|++.|..++.|+|+++++++|+.++..++.+.. . ...++++||+|||+|
T Consensus 237 ~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~~~~~~~~~~~-~--~~~~~i~~v~ViGaG 313 (699)
T TIGR02440 237 QGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFATTEMKKETGS-D--ATPAKIKKVGILGGG 313 (699)
T ss_pred ccCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCC-C--CCcccccEEEEECCc
Confidence 8899999999999999999999999999999999999999999999999999998876542 2 234678999999999
Q ss_pred CCcHHHHHHHH-HCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCCEEEEccc
Q 004892 318 LMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVI 396 (724)
Q Consensus 318 ~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~ 396 (724)
.||++||..++ ++|++|+++|++++.++++..++++.+++.++++.+++.+.+..+.+|+++++++++++||+||||||
T Consensus 314 ~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~adlViEav~ 393 (699)
T TIGR02440 314 LMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGFKDVDIVIEAVF 393 (699)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHhccCCEEEEecc
Confidence 99999999998 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCCHHHHHHHHHHH
Q 004892 397 ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVG 476 (724)
Q Consensus 397 e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~~~~~l~ 476 (724)
|++++|+++|+++++++++++||+||||++++++++..+.+|+||+|+|||||++.+++|||++++.|++++++.+..|+
T Consensus 394 E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~ 473 (699)
T TIGR02440 394 EDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALA 473 (699)
T ss_pred ccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCC
Q 004892 477 KIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPD 556 (724)
Q Consensus 477 ~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv~~~~ID~a~~~~g~~~Gp~~~~D~~Gld~~~~~~~~l~~~~~~ 556 (724)
+.+||+||+++|.|||++||++.++++||++++++|++++|||.++.++|||+|||+++|.+|+|+++++++.+++.+++
T Consensus 474 ~~~gk~pv~v~d~pGfi~nRl~~~~~~Ea~~l~~~G~~~~dID~a~~~~G~p~GPf~l~D~vGld~~~~i~~~l~~~~~~ 553 (699)
T TIGR02440 474 KKQGKTPIVVADKAGFYVNRILAPYMNEAARLLLEGEPVEHIDKALVKFGFPVGPITLLDEVGIDVGAKISPILEAELGE 553 (699)
T ss_pred HHcCCeEEEEccccchHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCcCHHHHHHHhchHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999998
Q ss_pred CCCCcHHHHHHHHcCCCCcccCccceeccCCC-CCCCCCCchhHHHHHhhhccCCCCCCCcccCHHHHHHHHHHHHHHHH
Q 004892 557 RSFQSPLVDLLLKSGRNGKANGKGLYTYEKGS-KPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNES 635 (724)
Q Consensus 557 ~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea 635 (724)
++.|++++++||++|++|+|||+|||+|++++ ++.+++.+..++. ..+ ...+++++++||++.+++|||
T Consensus 554 ~~~~~~~l~~~v~~G~lG~ksg~GfY~y~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~g~v~~Rll~~~~~Ea 623 (699)
T TIGR02440 554 RFKAPAVFDKLLSDDRKGRKNGKGFYLYGAATKKKAVDESVYGLLG-------IKP---GVDKEASAVAERCVMLMLNEA 623 (699)
T ss_pred CCCCcHHHHHHHHCCCCcccCCcEEEeCCCCCCcCCCCHHHHHHhC-------cCC---CCCCCHHHHHHHHHHHHHHHH
Confidence 77788999999999999999999999998643 3445544443331 111 124679999999999999999
Q ss_pred HHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHcCCCCC
Q 004892 636 CRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLS 711 (724)
Q Consensus 636 ~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~k~g~gfy 711 (724)
++|+++||+.+++|||+++++|+|||+|++|||+++|.+|+|.+++.++.+++.++++|+|+++|++|+++|++||
T Consensus 624 ~~ll~eGvva~~~dID~~~~~g~G~p~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~g~~~~p~~~L~~~~~~~~~f~ 699 (699)
T TIGR02440 624 VRCLDEGVIRSPRDGDIGAIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGDRFTPCQRLVAMAAEKQSFY 699 (699)
T ss_pred HHHHHCCCcCCHHHHHHHHHhcCCCCCCcCCHHHHHHHhCHHHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCCCcC
Confidence 9999999966999999999999999999999999999999999999999999999999999999999999999997
No 5
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=2.9e-127 Score=1113.55 Aligned_cols=690 Identities=35% Similarity=0.576 Sum_probs=610.8
Q ss_pred cEEEEEecCcEEEEEeCCC--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCCcccc
Q 004892 5 RVTMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSL 81 (724)
Q Consensus 5 ~v~~~~~~~~v~~i~l~~p--~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~ 81 (724)
.+.++..+++|++|||||| +.|++|.+|+++|.+++++++.|+++|+|||+|.+ ++||+|+|++++.......+...
T Consensus 6 ~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~ 85 (708)
T PRK11154 6 AFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEA 85 (708)
T ss_pred eEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHH
Confidence 4667775689999999999 47999999999999999999999999999999864 89999999998854221111112
Q ss_pred cchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCC--ceeeCcccccCccCCcchhhhhcccccHHHH
Q 004892 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (724)
Q Consensus 82 ~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a 159 (724)
+....++++ ++|.++||||||+|||+|+|||++|+++||||||+++ ++|++||+++|++|++|++++|++++|..+|
T Consensus 86 ~~~~~~~~~-~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A 164 (708)
T PRK11154 86 LARQGQQLF-AEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTA 164 (708)
T ss_pred HHHHHHHHH-HHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHH
Confidence 223334455 6799999999999999999999999999999999986 4899999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCC--CcHHHHHHHHHHHHH-HHH
Q 004892 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLG--SLSEAREVLKLARLQ-AKK 236 (724)
Q Consensus 160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~ 236 (724)
++|+++|++++|+||+++||||+++|++++.+++.++|+++....+ ... ...++. +.......+..++.+ .++
T Consensus 165 ~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~~-~~~---~~~~~~~~~p~~~~~~~~~~~~~~~~~ 240 (708)
T PRK11154 165 LDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPARR-PLP---VRERLLEGNPLGRALLFKQARKKTLAK 240 (708)
T ss_pred HHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCCccC-cCC---chhhhcccCchhHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999988421110 000 000000 011112233333443 457
Q ss_pred hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCcceEEEEcC
Q 004892 237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGG 316 (724)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~~~~~~~~~~~~~~~kI~VIG~ 316 (724)
++++|||+..+|++++.+...+++++++.|.+.|..++.|+|+++++++|+.+|..++.+.. . ..++.++||+|||+
T Consensus 241 ~~g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~~~~~~~~~~-~--~~~~~i~~v~ViGa 317 (708)
T PRK11154 241 TQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFATTEMKKDTGS-D--AKPRPVNKVGVLGG 317 (708)
T ss_pred cccCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCC-C--CCCCcccEEEEECC
Confidence 88899999999999999999999999999999999999999999999999999998876542 2 23467999999999
Q ss_pred CCCcHHHHHHHH-HCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCCEEEEcc
Q 004892 317 GLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAV 395 (724)
Q Consensus 317 G~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav 395 (724)
|.||++||..++ .+|++|+++|++++.++++..++++.+++.+++|.+++.+....+++|+++++++++++||+|||||
T Consensus 318 G~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav 397 (708)
T PRK11154 318 GLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAV 397 (708)
T ss_pred chhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHhccCCEEeecc
Confidence 999999999999 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCCHHHHHHHHHH
Q 004892 396 IESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTV 475 (724)
Q Consensus 396 ~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~~~~~l 475 (724)
||+.++|+++|+++++++++++||+||||++++++++..+.+|+||+|+|||+|++.+++|||++++.|++++++.+..+
T Consensus 398 ~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~ 477 (708)
T PRK11154 398 FEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVAL 477 (708)
T ss_pred cccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHHhCC
Q 004892 476 GKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFP 555 (724)
Q Consensus 476 ~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv~~~~ID~a~~~~g~~~Gp~~~~D~~Gld~~~~~~~~l~~~~~ 555 (724)
++.+||.||+++|.||||+||++.++++|+++++++|++++|||.++.++|||+|||+++|.+|+|++.++++.+++.++
T Consensus 478 ~~~~gk~pv~v~d~pGfi~nRl~~~~~~EA~~lv~eGv~~~dID~a~~~~G~p~GPf~~~D~~Gld~~~~i~~~l~~~~~ 557 (708)
T PRK11154 478 AKKQGKTPIVVRDGAGFYVNRILAPYINEAARLLLEGEPIEHIDAALVKFGFPVGPITLLDEVGIDVGTKIIPILEAALG 557 (708)
T ss_pred HHHcCCceEEEeccCcHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhhhHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999998
Q ss_pred CCCCCcHHHHHHHHcCCCCcccCccceeccCCCC---CCCCCCchhHHHHHhhhccCCCCCCCcccCHHHHHHHHHHHHH
Q 004892 556 DRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK---PKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVV 632 (724)
Q Consensus 556 ~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~ 632 (724)
+++.+++++++|+++|++|+|||+|||+|++++. +.+++++...+. ..+ ...+++++|.||++.+++
T Consensus 558 ~~~~~~~~l~~~v~~g~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~g~i~~Rll~~~~ 627 (708)
T PRK11154 558 ERFSAPAAFDKLLNDDRKGRKNGRGFYLYGQKGKKSKKQVDESVYPLLG-------ITP---QSRLSANEIAERCVMLML 627 (708)
T ss_pred CCCCCCHHHHHHHHCCCCcccCCceEEECCCCcccccccCCHHHHHHhc-------cCC---CCCCCHHHHHHHHHHHHH
Confidence 7766889999999999999999999999975322 334444433321 111 124789999999999999
Q ss_pred HHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHcCCCCCC
Q 004892 633 NESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSA 712 (724)
Q Consensus 633 ~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~k~g~gfy~ 712 (724)
|||++|+++||+.+++|||.+|++|+|||+|+||||+++|.+|++++++.++.+++.++++|.|+++|++|+++|++||.
T Consensus 628 nEa~~ll~eGvva~~~dID~~~~~G~G~p~~~gGp~~~~D~~Gld~~~~~~~~l~~~~~~~~~p~~~l~~~~~~~~~f~~ 707 (708)
T PRK11154 628 NEAVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGDRFTPCERLVEMAERGESFYP 707 (708)
T ss_pred HHHHHHHHCCCcCCHHHHHHHHHhcCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhcCCccCCCHHHHHHHHcCCCCCC
Confidence 99999999999669999999999999999999999999999999999999999999999999999999999999999973
No 6
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=100.00 E-value=1.6e-74 Score=643.80 Aligned_cols=402 Identities=32% Similarity=0.513 Sum_probs=359.1
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004892 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (724)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 386 (724)
+++||+|||+|.||++||.+++++|++|++||++++.++++.+++++.++.++++|.+++++.+..+++++.++++++++
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~ 83 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA 83 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCCH
Q 004892 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (724)
Q Consensus 387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~ 466 (724)
+||+|||||||+.++|+.+|++++..+++++||+||||++++++++..+.+|+|++|+|||+|++.++++|+++|+.|++
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~~Ts~ 163 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAA 163 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004892 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 544 (724)
Q Consensus 467 e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~G-v~~~~ID~a~-~~~g~~~Gp~~~~D~~Gld~~~ 544 (724)
++++++.++++.+||.||++++.|||++||++.++++||+.++++| +++++||+++ .++|||||||+++|++|+|+.+
T Consensus 164 e~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~~~~G~~mGPf~l~D~~Gldv~~ 243 (503)
T TIGR02279 164 EVAEQLYETALAWGKQPVHCHSTPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNF 243 (503)
T ss_pred HHHHHHHHHHHHcCCeeeEeCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhhhHHHH
Confidence 9999999999999999999999999999999999999999999998 5999999999 7899999999999999999999
Q ss_pred HHHHHHHHhC-CCCCC-CcHHHHHHHHcCCCCcccCccceeccCCCCCCCC-----------------------------
Q 004892 545 ATSKEFDKAF-PDRSF-QSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPD----------------------------- 593 (724)
Q Consensus 545 ~~~~~l~~~~-~~~~~-~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~~~~~~----------------------------- 593 (724)
++.+.+++.+ +++.| |++++++|+++|++|+|||+|||+|+++......
T Consensus 244 ~v~~~~~~~~~~~~~~~p~~~~~~~v~~G~lG~KtG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (503)
T TIGR02279 244 AVTCSVFNAFWQDRRFLPSLVQQELVIAGRLGRKSGLGVYDYREEAEAVVPLEAVSDSFSPRVTVVGDIGAAAPLLARLE 323 (503)
T ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHCCCCccccCCEeeeCCCCCCCCCCccccccccccceeecccccchhhHHHHHH
Confidence 9999988874 56555 7889999999999999999999999864322111
Q ss_pred -----------------------------------------CCchhHHHHHhhhcc--CCCCC-----------------
Q 004892 594 -----------------------------------------PSVLPIIEECRRLSN--IMPGG----------------- 613 (724)
Q Consensus 594 -----------------------------------------~~~~~~~~~~~~~~~--~~~~~----------------- 613 (724)
+.+..++...+.... +.+..
T Consensus 324 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~vEv~~~~~Ts~e~~~~a~~~~~~~ 403 (503)
T TIGR02279 324 AAGIKVEKKSGRGVTQIGDALLALTDGRTAQARAIELARPNLVLFDLVLDYSTGKRIAIAAAAVNPDSATRKAIYYLQQA 403 (503)
T ss_pred hccccccccccccccccchhhhhhccccchhhhhhhcCCCCchHHHHHhhhcccCeEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 000000000000000 01110
Q ss_pred -C-Cccc--CHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhh
Q 004892 614 -K-PISV--TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQL 689 (724)
Q Consensus 614 -~-~~~~--~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~ 689 (724)
+ +..+ ++++|+||++++++|||++++++||+ +++|||.+|++|+|||+ |||+|+|.+|+|.++++++.+++.
T Consensus 404 Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGva-s~~dID~a~~~g~G~P~---GP~~~~D~~Gld~~~~~l~~l~~~ 479 (503)
T TIGR02279 404 GKKVLQIADYPGLLILRTVAMLANEAADAVLQGVA-SAQDIDTAMRLGVNYPY---GPLAWAAQLGWQRILRVLENLQHH 479 (503)
T ss_pred CCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCc---CHHHHHHHhCHHHHHHHHHHHHHH
Confidence 0 0112 35899999999999999999999999 99999999999999999 999999999999999999999999
Q ss_pred hC-CCCCCCHHHHHHHHcCCCCCC
Q 004892 690 YG-NFFKPSRFLEERATKGIPLSA 712 (724)
Q Consensus 690 ~~-~~~~p~~~l~~~~k~g~gfy~ 712 (724)
++ ++|+|+++|++|++.|.+|.+
T Consensus 480 ~~~~~~~p~~~L~~~v~~g~~~~~ 503 (503)
T TIGR02279 480 YGEERYRPSSLLRRRALLGSGYED 503 (503)
T ss_pred cCCCcCCcCHHHHHHHHcCCCcCC
Confidence 98 489999999999999999853
No 7
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=3.9e-73 Score=634.91 Aligned_cols=404 Identities=32% Similarity=0.549 Sum_probs=362.0
Q ss_pred CCCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC
Q 004892 305 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (724)
Q Consensus 305 ~~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (724)
.++++||+|||+|.||++||.+++++|++|++||++++.++++.+++++.+++++++|.++.++.+..+++++.++++++
T Consensus 4 ~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~ 83 (507)
T PRK08268 4 LPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD 83 (507)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCC
Q 004892 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 464 (724)
Q Consensus 385 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t 464 (724)
+++||+|||||||+.++|+.+|++++..+++++||+||||++++++++..+.+|+||+|+|||+|++.++++|+++|+.|
T Consensus 84 ~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~T 163 (507)
T PRK08268 84 LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLAT 163 (507)
T ss_pred hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCCccHHHHHHhhchHH
Q 004892 465 SAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLPIGPFQLLDLAGYGV 542 (724)
Q Consensus 465 ~~e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~G-v~~~~ID~a~-~~~g~~~Gp~~~~D~~Gld~ 542 (724)
++++++++.++++.+||.|+++++.|||++||++.++++|++.++++| +++++||+++ .++|||||||+++|.+|+|+
T Consensus 164 s~~~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al~~~~G~~mGPf~l~D~~Gldv 243 (507)
T PRK08268 164 DPAVADALYALARAWGKTPVRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLDV 243 (507)
T ss_pred CHHHHHHHHHHHHHcCCceEEecCCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhchHH
Confidence 999999999999999999999999999999999999999999999998 5999999999 78999999999999999999
Q ss_pred HHHHHHHHHHhC-CCCCC-CcHHHHHHHHcCCCCcccCccceeccCCCC-CCCCCCch--------------------hH
Q 004892 543 AAATSKEFDKAF-PDRSF-QSPLVDLLLKSGRNGKANGKGLYTYEKGSK-PKPDPSVL--------------------PI 599 (724)
Q Consensus 543 ~~~~~~~l~~~~-~~~~~-~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~~-~~~~~~~~--------------------~~ 599 (724)
.+++.+.++..+ ++..| +++++++|+++|++|+|+|+|||+|+++++ +.++++.. .+
T Consensus 244 ~~~v~~~~~~~~~~~~~~~~~~~~~~lv~~g~lG~ksG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (507)
T PRK08268 244 NHAVMESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADGAKQPPAEAAPPAALPPVWVSADVEGDLAALARL 323 (507)
T ss_pred HHHHHHHHHHHhcCCCcCCccHHHHHHHHCCCCccccCCeeeECCCCCCCCCCCccccccCccccccccccchhHHHHHH
Confidence 999999988764 45445 788999999999999999999999975432 22222211 11
Q ss_pred HHH----------------------------Hhhhc-----------cCCCC--CCCccc--------------------
Q 004892 600 IEE----------------------------CRRLS-----------NIMPG--GKPISV-------------------- 618 (724)
Q Consensus 600 ~~~----------------------------~~~~~-----------~~~~~--~~~~~~-------------------- 618 (724)
+.. ..... -+.|. .+..++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~ 403 (507)
T PRK08268 324 LERLGATIETGEGPSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQ 403 (507)
T ss_pred HHhhccccccccccccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 100 00000 00000 011112
Q ss_pred ----------CHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHh
Q 004892 619 ----------TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQ 688 (724)
Q Consensus 619 ----------~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~ 688 (724)
++++|+||++.+++|||++|+++||+ |++|||.+|++|+|||+ |||+|+|.+|+|.++++++.+++
T Consensus 404 ~gk~pi~v~d~~Gfi~nRll~~~~nEa~~ll~eGva-s~~dID~a~~~g~G~p~---GP~~~~D~~Gld~~~~~~~~l~~ 479 (507)
T PRK08268 404 DGKAVSVIRDSPGFVAQRTVAMIVNEAADIAQQGIA-SPADIDLAMRLGLNYPL---GPLAWGDRLGAARILRVLENLQA 479 (507)
T ss_pred cCCeeEEeCCCccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCc---CHHHHHHHhCHHHHHHHHHHHHH
Confidence 68999999999999999999999998 99999999999999999 99999999999999999999999
Q ss_pred hhCC-CCCCCHHHHHHHHcCCCCCC
Q 004892 689 LYGN-FFKPSRFLEERATKGIPLSA 712 (724)
Q Consensus 689 ~~~~-~~~p~~~l~~~~k~g~gfy~ 712 (724)
.+|+ +|+|+++|++|+++|+.||.
T Consensus 480 ~~g~~~~~p~~ll~~~v~~G~~~~~ 504 (507)
T PRK08268 480 LYGDPRYRPSPWLRRRAALGLSLRS 504 (507)
T ss_pred HhCCCcCCcCHHHHHHHHcCCCcCC
Confidence 9985 99999999999999999976
No 8
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=100.00 E-value=1.7e-65 Score=526.97 Aligned_cols=280 Identities=40% Similarity=0.682 Sum_probs=271.1
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004892 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (724)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 386 (724)
.++||+|||+|.||++||..++..|++|+++|++++.++++...+++.+++++++|++++++.+..+++++.++++.+++
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~ 81 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALK 81 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhc
Confidence 58999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCCH
Q 004892 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (724)
Q Consensus 387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~ 466 (724)
+||+|||+|+||.++|+++|+++++++++++||+||||+++++++++.+.+|+||+|+|||||++.|++||+++|..|++
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~ 161 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSD 161 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004892 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 544 (724)
Q Consensus 467 e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~g~~~Gp~~~~D~~Gld~~~ 544 (724)
++++++.+|++.+||+|++++|.||||+||++.++++||++++++|+ ++++||.++ .++|||||||+++|++|+|+.+
T Consensus 162 e~~~~~~~~~~~igK~~vv~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~pmGpf~l~D~~GlD~~~ 241 (307)
T COG1250 162 ETVERVVEFAKKIGKTPVVVKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVML 241 (307)
T ss_pred HHHHHHHHHHHHcCCCCEeecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCccHHHHHHHHhHHHHH
Confidence 99999999999999999888999999999999999999999999995 999999999 7899999999999999999999
Q ss_pred HHHHHHHHhCCCC-CC-CcHHHHHHHHcCCCCcccCccceeccC
Q 004892 545 ATSKEFDKAFPDR-SF-QSPLVDLLLKSGRNGKANGKGLYTYEK 586 (724)
Q Consensus 545 ~~~~~l~~~~~~~-~~-~~~~l~~~v~~g~~G~k~g~Gfy~y~~ 586 (724)
++++.+++.++++ .+ |++++++|++.|++|+|||+|||+|++
T Consensus 242 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~ 285 (307)
T COG1250 242 HIMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG 285 (307)
T ss_pred HHHHHHHHhcCCCccccccHHHHHHHhcccccccCCCcceeccc
Confidence 9999999888843 44 689999999999999999999999975
No 9
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=1.4e-63 Score=470.35 Aligned_cols=280 Identities=33% Similarity=0.589 Sum_probs=265.8
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHH-----HHHhhcCccccc
Q 004892 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK-----ANNALKMLKGVL 380 (724)
Q Consensus 306 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-----~~~~~~~i~~~~ 380 (724)
..++.|+|||+|.||++||+..+..|++|+++|++++++.++.+.|.+.+.+..+++..+... ++..+++|..++
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t 88 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST 88 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence 467899999999999999999999999999999999999999999999999988888776443 366788999999
Q ss_pred Cc-cCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEe
Q 004892 381 DY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV 459 (724)
Q Consensus 381 ~~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii 459 (724)
+. ++++++|+||||+.|+.++|+.+|++++..+++++|++||||++.+++++..+++|.||.|+|||||+..|++||+|
T Consensus 89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEVi 168 (298)
T KOG2304|consen 89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEVI 168 (298)
T ss_pred CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhhh
Confidence 88 66899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHh
Q 004892 460 RTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDL 537 (724)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~g~~~Gp~~~~D~ 537 (724)
+++.|++++++.+..|.+.+||++|-++|.||||+||++.+|++||+++++.|. +.+|||.+| .|.|+||||||++|.
T Consensus 169 r~~~TS~eTf~~l~~f~k~~gKttVackDtpGFIVNRlLiPyl~ea~r~yerGdAskeDIDtaMklGagyPMGPfEL~Dy 248 (298)
T KOG2304|consen 169 RTDDTSDETFNALVDFGKAVGKTTVACKDTPGFIVNRLLIPYLMEAIRMYERGDASKEDIDTAMKLGAGYPMGPFELADY 248 (298)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCceeecCCCchhhhHHHHHHHHHHHHHHHhcCCcHhhHHHHHhccCCCCCChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999996 999999999 899999999999999
Q ss_pred hchHHHHHHHHHHHHhCCCC-CC-CcHHHHHHHHcCCCCcccCccceecc
Q 004892 538 AGYGVAAATSKEFDKAFPDR-SF-QSPLVDLLLKSGRNGKANGKGLYTYE 585 (724)
Q Consensus 538 ~Gld~~~~~~~~l~~~~~~~-~~-~~~~l~~~v~~g~~G~k~g~Gfy~y~ 585 (724)
+|||++..+++.|++.+++. .| |+|++.++|++|++|+|+|+|||+|.
T Consensus 249 vGLDt~kfvmdgwhe~~pe~~~f~psPll~klVaegklGrKtg~GfY~Yk 298 (298)
T KOG2304|consen 249 VGLDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGKLGRKTGEGFYKYK 298 (298)
T ss_pred hhHHHHHHHHHHHHhcCCcccccCCChHHHHHHhccccccccCccceecC
Confidence 99999999999999998654 44 99999999999999999999999993
No 10
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=2e-61 Score=491.28 Aligned_cols=378 Identities=38% Similarity=0.630 Sum_probs=349.2
Q ss_pred CcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCCEEEEcccCC
Q 004892 319 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIES 398 (724)
Q Consensus 319 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~ 398 (724)
||++||..+..+|++|++.|.|...++++..++...+...+..+.++..+.......+..+.|++.++++|+|||+|.||
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav~ed 80 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAVFED 80 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccchhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCCHHHHHHHHHHHHH
Q 004892 399 VPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKI 478 (724)
Q Consensus 399 ~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~~~~~l~~~ 478 (724)
+++|++++.+|++++++++|+.||||++++.++++.+..|++++|+|||+|.+.++++||+.+..|+..++..+.+....
T Consensus 81 l~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~ 160 (380)
T KOG1683|consen 81 LELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSP 160 (380)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHc-CCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCCC
Q 004892 479 IKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSL-GVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR 557 (724)
Q Consensus 479 lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~-Gv~~~~ID~a~~~~g~~~Gp~~~~D~~Gld~~~~~~~~l~~~~~~~ 557 (724)
.||.|++|++++||.+||++.+|.+++.++..+ |++|.++|++...||||+||+++.|..|+|+..++...+...++++
T Consensus 161 ~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 161 AGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGPR 240 (380)
T ss_pred cCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccch
Confidence 999999999999999999999999999999988 9999999999999999999999999999999888777666555443
Q ss_pred CCCcHHHHHHHHcCCCCcccCccceeccCCCCCCCCC-CchhHHHHHhhhccCCCCCCCcccCHHHHHHHHHHHHHHHHH
Q 004892 558 SFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDP-SVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESC 636 (724)
Q Consensus 558 ~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea~ 636 (724)
+.++|++.|+.|+|||+|||.|+++..+..++ +..+.+.... +...+...+++++++|++++++|||+
T Consensus 241 -----~~eel~~~~~~g~kT~kg~y~y~~~l~k~~~~~~~~~~~r~l~------~~~~~r~~~~ed~v~~~~~p~VnEal 309 (380)
T KOG1683|consen 241 -----IEEELLEKGRAGIKTGKGIYPYARGLTKKMKRDEMEALLRRLS------LTPNPRVADDEDFVEFLLSPFVNEAL 309 (380)
T ss_pred -----hHHHHHHHHhhhhhccCcccccccccccCCChhhHHHHHHHhc------cCCCcccCCHHHHHHHHhhHHHHHHH
Confidence 78999999999999999999999875544444 2233333222 11223567899999999999999999
Q ss_pred HHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHcCCCCCC
Q 004892 637 RVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSA 712 (724)
Q Consensus 637 ~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~k~g~gfy~ 712 (724)
+|++|||..+++++|++.++|+|||+++||||.|+|.+|++++++.++.|+. |+|+++|++++++|+-||+
T Consensus 310 ~~l~EGi~~~~~~~Di~~v~G~gfp~~~GGp~~~~d~~G~~ki~~~l~~~~~-----f~P~~~l~~~a~~~~~~~~ 380 (380)
T KOG1683|consen 310 RCLLEGLKASPSDGDIASVFGLGFPPFRGGPMRFVDLYGADKIVSRLQKWSS-----FEPCQLLKDHAKSGKKFYN 380 (380)
T ss_pred HHHHHHHhcCccccceeeeeccCCCCcCCCceeeeeccChHHHHHHHHHHhc-----CCHHHHHHHHHhhhccccC
Confidence 9999999999999999999999999999999999999999999999999986 9999999999999999985
No 11
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.3e-59 Score=489.76 Aligned_cols=280 Identities=34% Similarity=0.558 Sum_probs=271.0
Q ss_pred CCCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC
Q 004892 305 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (724)
Q Consensus 305 ~~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (724)
+++++||+|||+|.||.+||.+++.+|++|++||++++.++++.+++++.+++++++|.++..+....+++++.++++++
T Consensus 2 ~~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 81 (286)
T PRK07819 2 SDAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD 81 (286)
T ss_pred CCCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhC-CCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCC
Q 004892 385 FKDVDMVIEAVIESVPLKQKIFSELEKAC-PPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTER 463 (724)
Q Consensus 385 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~-~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~ 463 (724)
+++||+|||||||+.++|+++|+++++.+ ++++||+||||++++++++....+|+|++|+|||+|++.++++||+++..
T Consensus 82 ~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~ 161 (286)
T PRK07819 82 FADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLV 161 (286)
T ss_pred hCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCC
Confidence 99999999999999999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH-HcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhch
Q 004892 464 TSAQVILDLMTVGK-IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGY 540 (724)
Q Consensus 464 t~~e~~~~~~~l~~-~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~g~~~Gp~~~~D~~Gl 540 (724)
|++++++++.+++. .+||.|++++|.|||++||++.++++|+++++++|+ +++|||.++ .++|||+|||+++|.+|+
T Consensus 162 T~~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~nRi~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G~p~Gpf~~~D~~Gl 241 (286)
T PRK07819 162 TSEATVARAEEFASDVLGKQVVRAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMVLGCAHPMGPLRLSDLVGL 241 (286)
T ss_pred CCHHHHHHHHHHHHHhCCCCceEecCCCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhcc
Confidence 99999999999988 599999999999999999999999999999999997 999999999 899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCC-CcHHHHHHHHcCCCCcccCccceec
Q 004892 541 GVAAATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKANGKGLYTY 584 (724)
Q Consensus 541 d~~~~~~~~l~~~~~~~~~-~~~~l~~~v~~g~~G~k~g~Gfy~y 584 (724)
|++.++++.+++.++++.| |++++++|+++|++|+|+|+|||+|
T Consensus 242 d~~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~GfY~y 286 (286)
T PRK07819 242 DTVKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY 286 (286)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCHHHHHHHHCCCCcccCCCEeccC
Confidence 9999999999999988665 8899999999999999999999998
No 12
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=5e-55 Score=459.58 Aligned_cols=279 Identities=29% Similarity=0.444 Sum_probs=264.9
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHH-HHHhhcCcccccCcc-C
Q 004892 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK-ANNALKMLKGVLDYS-E 384 (724)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~~-~ 384 (724)
.++||+|||+|.||++||..++.+|++|++||++++.++++.+.+++.+..+.+.+.++.++ ......+++.+++++ +
T Consensus 2 ~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a 81 (287)
T PRK08293 2 DIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA 81 (287)
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence 46899999999999999999999999999999999999999999888888889988888776 666778999888884 6
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCC
Q 004892 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 464 (724)
Q Consensus 385 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t 464 (724)
+++||+||+|+||+.++|+++++++.+.+++++||++|+|++++++++..+.+|+||+|+|||+|++.++++|+++++.|
T Consensus 82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~~~~t 161 (287)
T PRK08293 82 VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGT 161 (287)
T ss_pred hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCeeEEE-cCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchH
Q 004892 465 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYG 541 (724)
Q Consensus 465 ~~e~~~~~~~l~~~lGk~~v~v-~d~pG~i~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~g~~~Gp~~~~D~~Gld 541 (724)
++++++.+.++++.+|+.|+++ +|.|||++||++.++++||++++++|+ +++|||+++ .++|+|+|||+++|.+|||
T Consensus 162 ~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~g~~~Gp~~~~D~~Gld 241 (287)
T PRK08293 162 DPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVGLD 241 (287)
T ss_pred CHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcCHHHHHHHhchH
Confidence 9999999999999999999999 699999999999999999999999997 999999999 8999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCC--CcHHHHHHHHcCCCCcccCccceecc
Q 004892 542 VAAATSKEFDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYE 585 (724)
Q Consensus 542 ~~~~~~~~l~~~~~~~~~--~~~~l~~~v~~g~~G~k~g~Gfy~y~ 585 (724)
++.++++.+++.++++++ |++++++||++|++|+|+|+|||+|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~ 287 (287)
T PRK08293 242 TAYNITSNWAEATDDENAKKAAALLKEYIDKGKLGVATGEGFYNYP 287 (287)
T ss_pred HHHHHHHHHHHHhCCcccccchHHHHHHHHCCCCcccCCCccccCc
Confidence 999999999999988764 78999999999999999999999994
No 13
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=4.6e-54 Score=453.47 Aligned_cols=278 Identities=31% Similarity=0.549 Sum_probs=263.8
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHH---HHHhhHhcCCCCHHHHHHhhcCcccccCcc
Q 004892 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEA---NVRGLVTRGKLTQDKANNALKMLKGVLDYS 383 (724)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~---~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 383 (724)
+++||+|||+|.||.+||..++++|++|++||++++.++++.+++++ .+...++.+.++..+.+....++..+++++
T Consensus 2 ~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 81 (291)
T PRK06035 2 DIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE 81 (291)
T ss_pred CCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH
Confidence 47899999999999999999999999999999999999988877765 366677888888888888888998888888
Q ss_pred CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCC
Q 004892 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTER 463 (724)
Q Consensus 384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~ 463 (724)
++++||+||+|+||+.++|+++++++.+.+++++||+||||++++++++..+.+++|++|+|||+|++.++++|+++++.
T Consensus 82 ~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~g~~ 161 (291)
T PRK06035 82 SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAAL 161 (291)
T ss_pred HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEEeCCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchH
Q 004892 464 TSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYG 541 (724)
Q Consensus 464 t~~e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~g~~~Gp~~~~D~~Gld 541 (724)
|++++++.+.++++.+|+.|++++|.|||++||++.++++||++++++|+ +++|||+++ .++|+|+|||+++|.+|+|
T Consensus 162 T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~~~ea~~~~~~g~a~~~~iD~~~~~~~g~~~Gp~~~~D~~Gl~ 241 (291)
T PRK06035 162 TSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIGID 241 (291)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcCCCccCHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999997 999999999 8999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCC-CcHHHHHHHHcCCCCccc-----Cccceec
Q 004892 542 VAAATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKAN-----GKGLYTY 584 (724)
Q Consensus 542 ~~~~~~~~l~~~~~~~~~-~~~~l~~~v~~g~~G~k~-----g~Gfy~y 584 (724)
++.++++.+++.+++++| |++++++|+++|++|+|| |+|||+|
T Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~g~~G~k~~~~~~g~Gfy~y 290 (291)
T PRK06035 242 TVYHIAEYLYEETGDPQFIPPNSLKQMVLNGYVGDKKVKYGSKGGWFDY 290 (291)
T ss_pred HHHHHHHHHHHHcCCCcCCccHHHHHHHHCCCCcCCCCCCCCCceeeec
Confidence 999999999999988665 889999999999999999 9999998
No 14
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=6.6e-54 Score=451.57 Aligned_cols=280 Identities=32% Similarity=0.514 Sum_probs=267.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004892 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (724)
++||+|||+|.||.+||..|+++|++|++||++++.++++.+++...+...++.+.++..+.+....+++.++++ ++++
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA 80 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence 478999999999999999999999999999999999999988888888888888999988888888899988888 6789
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCCH
Q 004892 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (724)
Q Consensus 387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~ 466 (724)
+||+||+|+|++.++|+.+++++.+.++++++|++|+|+++++++++.+.++.+++|+||++|++.++++|+++++.|++
T Consensus 81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t~~ 160 (288)
T PRK09260 81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSD 160 (288)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004892 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 544 (724)
Q Consensus 467 e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~g~~~Gp~~~~D~~Gld~~~ 544 (724)
+++++++++++.+|+.|++++|.|||++||++.++++||++++++|+ +++|||.++ .++|||+|||+++|.+|+|++.
T Consensus 161 ~~~~~~~~~l~~lg~~~v~v~d~~Gf~~nRl~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~p~Gp~~~~D~~Gl~~~~ 240 (288)
T PRK09260 161 ETVQVAKEVAEQMGKETVVVNEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELGDLVGLDTRL 240 (288)
T ss_pred HHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999997 999999999 7999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCcHHHHHHHHcCCCCcccCccceeccCC
Q 004892 545 ATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKG 587 (724)
Q Consensus 545 ~~~~~l~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~ 587 (724)
++++.+++.+++++.|++++.+|+++|++|+|+|+|||+|+++
T Consensus 241 ~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~ 283 (288)
T PRK09260 241 NNLKYLHETLGEKYRPAPLLEKYVKAGRLGRKTGRGVYDYTNR 283 (288)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCCCCccccCCEEEECCCC
Confidence 9999999998887668999999999999999999999999764
No 15
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=8.5e-54 Score=449.61 Aligned_cols=278 Identities=36% Similarity=0.617 Sum_probs=267.3
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004892 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (724)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 386 (724)
.|+||+|||+|.||.+||..++++|++|+++|++++.++++.+++++.++...+.|.++..+......+++.++++++++
T Consensus 2 ~~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 81 (282)
T PRK05808 2 GIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLK 81 (282)
T ss_pred CccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhc
Confidence 46799999999999999999999999999999999999999999999999999999999888888888999888888899
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCCH
Q 004892 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (724)
Q Consensus 387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~ 466 (724)
+||+||+|+||+.++|+++++++.++++++++|+||||++++++++..+.++.|++++||++|++.++++|+++++.|++
T Consensus 82 ~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~ 161 (282)
T PRK05808 82 DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSD 161 (282)
T ss_pred cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004892 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 544 (724)
Q Consensus 467 e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~g~~~Gp~~~~D~~Gld~~~ 544 (724)
++++.+.++++.+|+.|++++|.|||++||++.++++|+++++++|+ +|+|||.++ .++|||+|||+++|.+|+|++.
T Consensus 162 e~~~~~~~l~~~lGk~pv~~~d~~g~i~~Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g~g~p~Gp~~~~D~~Gl~~~~ 241 (282)
T PRK05808 162 ATHEAVEALAKKIGKTPVEVKNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMKLGCNHPIGPLALADLIGLDTCL 241 (282)
T ss_pred HHHHHHHHHHHHcCCeeEEecCccChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999997 999999999 8999999999999999999999
Q ss_pred HHHHHHHHhCCCCCC-CcHHHHHHHHcCCCCcccCccceec
Q 004892 545 ATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKANGKGLYTY 584 (724)
Q Consensus 545 ~~~~~l~~~~~~~~~-~~~~l~~~v~~g~~G~k~g~Gfy~y 584 (724)
++++.+++.++++.| |++++++|+++|++|+|+|+|||+|
T Consensus 242 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y 282 (282)
T PRK05808 242 AIMEVLYEGFGDSKYRPCPLLRKMVAAGWLGRKTGRGFYDY 282 (282)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCcccCC
Confidence 999999999987555 8899999999999999999999998
No 16
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=100.00 E-value=2.1e-53 Score=449.64 Aligned_cols=282 Identities=32% Similarity=0.577 Sum_probs=270.1
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004892 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (724)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 386 (724)
+++||+|||+|.||.+||..|+++|++|++||++++.++++.+++++.++.+++.|.++.++.+..++++.+++++++++
T Consensus 3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
T PLN02545 3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELR 82 (295)
T ss_pred CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhC
Confidence 47899999999999999999999999999999999999999999999999999999999988888888888888888899
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCCH
Q 004892 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (724)
Q Consensus 387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~ 466 (724)
+||+||+||+|++++|+.+++++.+.+++++||+||||++++++++..+.++.+++++||++||+.++++|+++++.|++
T Consensus 83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~~ 162 (295)
T PLN02545 83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSD 162 (295)
T ss_pred CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004892 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 544 (724)
Q Consensus 467 e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~g~~~Gp~~~~D~~Gld~~~ 544 (724)
++++.+.++++.+|+.++++++.|||++||++.++++|+++++++|+ +++|||.++ .++|||+|||+++|.+|+|++.
T Consensus 163 e~~~~~~~ll~~lG~~~~~~~d~~g~i~nri~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~~~Gp~~~~D~~Gl~~~~ 242 (295)
T PLN02545 163 EVFDATKALAERFGKTVVCSQDYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIGLDTCL 242 (295)
T ss_pred HHHHHHHHHHHHcCCeeEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCCCHHHHHHHhchHHHH
Confidence 99999999999999999999999999999999999999999999997 999999999 8999999999999999999999
Q ss_pred HHHHHHHHhCCCCCC-CcHHHHHHHHcCCCCcccCccceeccCCC
Q 004892 545 ATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKANGKGLYTYEKGS 588 (724)
Q Consensus 545 ~~~~~l~~~~~~~~~-~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~ 588 (724)
++++.+++.++++.| |++++++|+++|++|+|+|+|||+|++++
T Consensus 243 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~ 287 (295)
T PLN02545 243 SIMKVLHEGLGDSKYRPCPLLVQYVDAGRLGRKSGRGVYHYDGKK 287 (295)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCcccCCCeeeECCCCC
Confidence 999999999987655 88999999999999999999999998754
No 17
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=3.3e-53 Score=447.37 Aligned_cols=282 Identities=32% Similarity=0.521 Sum_probs=268.3
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc
Q 004892 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (724)
Q Consensus 306 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 385 (724)
++++||+|||+|.||.+||..++++|++|++||++++.++++.+++.+.+..+++.|.++..+....+.+++.+++++++
T Consensus 2 ~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 81 (292)
T PRK07530 2 MAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDL 81 (292)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHh
Confidence 35789999999999999999999999999999999999999988898888888889999988888888899988888889
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCC
Q 004892 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS 465 (724)
Q Consensus 386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~ 465 (724)
++||+||+||||+.++|+.+++++.+.++++++|+||||++++++++..+.+++|++|+||++|++.++++|++++..|+
T Consensus 82 ~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~~t~ 161 (292)
T PRK07530 82 ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATD 161 (292)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHH
Q 004892 466 AQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVA 543 (724)
Q Consensus 466 ~e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~g~~~Gp~~~~D~~Gld~~ 543 (724)
+++++.+.++++.+|+.|++++|.|||++||++.++++|+++++++|+ ++++||.++ .++|||+|||+++|.+|+|++
T Consensus 162 ~~~~~~~~~~~~~~gk~~v~~~d~pg~i~nRl~~~~~~ea~~~~~~g~~~~~~iD~~~~~g~g~~~GP~~~~D~~Gl~~~ 241 (292)
T PRK07530 162 EATFEAAKEFVTKLGKTITVAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMKLGANHPMGPLELADFIGLDTC 241 (292)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCcCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHH
Confidence 999999999999999999999999999999999999999999999998 999999999 799999999999999999999
Q ss_pred HHHHHHHHHhCCCCCC-CcHHHHHHHHcCCCCcccCccceeccCC
Q 004892 544 AATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKANGKGLYTYEKG 587 (724)
Q Consensus 544 ~~~~~~l~~~~~~~~~-~~~~l~~~v~~g~~G~k~g~Gfy~y~~~ 587 (724)
.++++.+++.++++.| |++++.+|++.|++|+|+|+|||+|+++
T Consensus 242 ~~~~~~~~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~Gfy~y~~~ 286 (292)
T PRK07530 242 LSIMQVLHDGLADSKYRPCPLLVKYVEAGWLGRKTGRGFYDYRGE 286 (292)
T ss_pred HHHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeeCCCC
Confidence 9999999999887555 8899999999999999999999999654
No 18
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.4e-51 Score=434.88 Aligned_cols=268 Identities=28% Similarity=0.408 Sum_probs=254.9
Q ss_pred CcHHHHHHHHHCCCcEEEEeCCHH-------HHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccC--c-cCcCCC
Q 004892 319 MGSGIATAHILNNIYVVLKEVNSE-------YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--Y-SEFKDV 388 (724)
Q Consensus 319 mG~~iA~~la~~G~~V~l~d~~~~-------~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~-~~~~~a 388 (724)
||++||..++.+|++|+++|++++ .++++.+++++.++.++++|.++.++.+..+++++++++ . +++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 899999999999999999999995 467788999999999999999999999999999998765 3 668999
Q ss_pred CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCCHHH
Q 004892 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQV 468 (724)
Q Consensus 389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~ 468 (724)
|+|||||||+.++|+++|+++++.+++++||+||||++++++++..+.+|+|++|+|||+||+.+++|||++++.|++++
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e~ 160 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAV 160 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---ccHHHHHHhhchHHH
Q 004892 469 ILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQLLDLAGYGVA 543 (724)
Q Consensus 469 ~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~G-v~~~~ID~a~-~~~g~~---~Gp~~~~D~~Gld~~ 543 (724)
++++.++++.+||.|+++++.|||++||++.++++|++.++++| +++++||.++ .++||| +|||+++|.+|+|++
T Consensus 161 ~~~~~~ll~~lGk~~v~v~d~~Gfi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~ 240 (314)
T PRK08269 161 VDRLAALLERIGKVPVVCGPSPGYIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDIL 240 (314)
T ss_pred HHHHHHHHHHcCCcEEEecCCCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999998 5999999999 799999 699999999999999
Q ss_pred HHHHHHHHHhCCCCC-CCcHHHHHHHHcCCCCcccCccceeccC
Q 004892 544 AATSKEFDKAFPDRS-FQSPLVDLLLKSGRNGKANGKGLYTYEK 586 (724)
Q Consensus 544 ~~~~~~l~~~~~~~~-~~~~~l~~~v~~g~~G~k~g~Gfy~y~~ 586 (724)
.++++.+++.++++. .|++++++|+++|++|+|+|+|||+|++
T Consensus 241 ~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~ksG~GfY~y~~ 284 (314)
T PRK08269 241 YYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDYAG 284 (314)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHCCCCcccCCCcceeCCC
Confidence 999999999888844 4889999999999999999999999964
No 19
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=6.8e-52 Score=434.89 Aligned_cols=277 Identities=24% Similarity=0.325 Sum_probs=248.8
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cC
Q 004892 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (724)
Q Consensus 306 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (724)
+.++||+|||+|.||++||.+++.+|++|++||++++.++++...+++.+..+.+.+ ++.. ...++++.++++ ++
T Consensus 5 ~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~-~~~~---~~~~~i~~~~~l~~a 80 (321)
T PRK07066 5 TDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQG-LAPG---ASPARLRFVATIEAC 80 (321)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcC-CChh---hHHhhceecCCHHHH
Confidence 458899999999999999999999999999999999999999888988888888877 3332 334688888888 56
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCC
Q 004892 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 464 (724)
Q Consensus 385 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t 464 (724)
+++||+|||||||+.++|+++|+++++.+++++||+||||+++++++++.+.+|+||+++||||||+.+|+|||++++.|
T Consensus 81 v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T 160 (321)
T PRK07066 81 VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERT 160 (321)
T ss_pred hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCeeEEE-cCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCC---ccHHHHHHhh
Q 004892 465 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLP---IGPFQLLDLA 538 (724)
Q Consensus 465 ~~e~~~~~~~l~~~lGk~~v~v-~d~pG~i~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~g~~---~Gp~~~~D~~ 538 (724)
++++++++.+|++.+||+||++ +|.||||+||++.++++||++++++|+ +++|||+++ .++|+| +|||+++|++
T Consensus 161 ~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~~~g~g~r~~~~Gpf~~~Dl~ 240 (321)
T PRK07066 161 APEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIRFGAGIRWSFMGTFLTYTLA 240 (321)
T ss_pred CHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHhhhc
Confidence 9999999999999999999999 799999999999999999999999996 999999999 799998 8999999999
Q ss_pred chHH-HHHHHHHHHHhCCCC---CCCcHHHHHHHH------cCCCCcccCccceeccC
Q 004892 539 GYGV-AAATSKEFDKAFPDR---SFQSPLVDLLLK------SGRNGKANGKGLYTYEK 586 (724)
Q Consensus 539 Gld~-~~~~~~~l~~~~~~~---~~~~~~l~~~v~------~g~~G~k~g~Gfy~y~~ 586 (724)
|+|. +.+.++++.+.+.+. ..++++..+|++ ++.+|.++..++|.|.+
T Consensus 241 Gld~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd 298 (321)
T PRK07066 241 GGDAGMRHFMQQFGPALELPWTKLVAPELTDALIDRVVEGTAEQQGPRSIKALERYRD 298 (321)
T ss_pred ChHHHHHHHHHHhhhhhhHHHHhcCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9997 555666666554321 124456677777 68999999999999965
No 20
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=5.2e-50 Score=392.15 Aligned_cols=250 Identities=32% Similarity=0.516 Sum_probs=223.8
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccch
Q 004892 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84 (724)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (724)
+.+...+++|+.||||||+ +|+|+..++.+|.+++..+++|+.+.++||||.|+.||+|+|++++.......-...
T Consensus 38 ~~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~--- 114 (290)
T KOG1680|consen 38 IELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDG--- 114 (290)
T ss_pred eEEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccc---
Confidence 3333337899999999996 799999999999999999999999999999999999999999999976432221111
Q ss_pred hHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHH
Q 004892 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML 164 (724)
Q Consensus 85 ~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~l 164 (724)
...+.+ ..+.+.+||+||+|||+|+|||+||+++||+|||+++|+|++|+.++|++|+||||+||+|.+|..+|++|++
T Consensus 115 ~~~~~~-~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~l 193 (290)
T KOG1680|consen 115 IFLRVW-DLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMIL 193 (290)
T ss_pred cccchh-hhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHH
Confidence 112233 4455799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhH
Q 004892 165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (724)
Q Consensus 165 tg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (724)
||++++|+||+++|||++|||.++++.+|.+|+++|++.|+..++
T Consensus 194 tg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~~~~v~----------------------------------- 238 (290)
T KOG1680|consen 194 TGRRLGAQEAKKIGLVNKVVPSGDALGEAVKLAEQIAKNSPLVVR----------------------------------- 238 (290)
T ss_pred hcCcccHHHHHhCCceeEeecchhHHHHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence 999999999999999999999999999999999999999875543
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004892 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (724)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~ 295 (724)
+.|+.++.+.+.++.+++..|...|...+.++|.+|++.+|.+||++++.
T Consensus 239 -~~K~svn~~~e~~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~~kr~~~~~ 288 (290)
T KOG1680|consen 239 -ADKESVNAAYETTLFEGLELERDLFGSTFATEDRLEGMTAFAEKRKPKFS 288 (290)
T ss_pred -HHHHHHHHHhhccHHHHHHhhhhhhhhhhhhHHHHHHHHHhcccCCcccc
Confidence 45778888999999999999999999999999999999999999998864
No 21
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.7e-49 Score=404.77 Aligned_cols=253 Identities=30% Similarity=0.470 Sum_probs=227.5
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcc
Q 004892 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (724)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (724)
|+++.+.+++ +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++..... .
T Consensus 1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~---~ 76 (257)
T PRK05862 1 MAYETILVET-RGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSF---M 76 (257)
T ss_pred CCCceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccch---h
Confidence 7888899998 7899999999996 799999999999999999999999999999999999999999998754211 1
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004892 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (724)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a 159 (724)
..+.......+ .+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..++
T Consensus 77 ~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 155 (257)
T PRK05862 77 DVYKGDYITNW-EKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKA 155 (257)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHH
Confidence 11112233445 66899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004892 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (724)
Q Consensus 160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (724)
++|+++|++++|+||+++||||+|+|++++++++.++++++++.++.+++
T Consensus 156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------ 205 (257)
T PRK05862 156 MDLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASFSLPAVM------------------------------ 205 (257)
T ss_pred HHHHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999988765433
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|+.++.....++.++++.|.+.+..++.|+|+++++++|++||+|..
T Consensus 206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~~kr~p~~ 254 (257)
T PRK05862 206 ------MAKEAVNRAYETTLAEGLLFERRLFHSLFATEDQKEGMAAFVEKRKPVF 254 (257)
T ss_pred ------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCCC
Confidence 4577788777788999999999999999999999999999999998764
No 22
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.1e-49 Score=405.45 Aligned_cols=254 Identities=41% Similarity=0.659 Sum_probs=226.3
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCccc
Q 004892 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (724)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (724)
|+ ++.++. +++|++||||||+.|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|+|++++..........
T Consensus 1 ~~--~i~~~~-~~~v~~itl~rp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 77 (257)
T PRK07658 1 MK--FLSVRV-EDHVAVITLNHPPANALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQAT 77 (257)
T ss_pred Cc--eEEEEe-eCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHH
Confidence 55 678888 789999999999889999999999999999999999999999999999999999999885432111111
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHH
Q 004892 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (724)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~ 160 (724)
.+......++ ++|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|+
T Consensus 78 ~~~~~~~~~~-~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 156 (257)
T PRK07658 78 ELAQLGQVTF-ERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKAL 156 (257)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHH
Confidence 1222334555 678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004892 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (724)
Q Consensus 161 ~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (724)
+|+++|++++|+||+++||||+|||++++.+++.++++++++.++.+++
T Consensus 157 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------- 205 (257)
T PRK07658 157 EMMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKSPATTR------------------------------- 205 (257)
T ss_pred HHHHcCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCCHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999998864332
Q ss_pred ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|++++.....+++++++.|.+.+..++.|+++++++++|++||+|++
T Consensus 206 -----~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~ 254 (257)
T PRK07658 206 -----AVLELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKRKPSF 254 (257)
T ss_pred -----HHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence 4567777777778999999999999999999999999999999988775
No 23
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-48 Score=406.39 Aligned_cols=256 Identities=28% Similarity=0.423 Sum_probs=225.4
Q ss_pred CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCC--
Q 004892 1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-- 76 (724)
Q Consensus 1 M~-~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~-- 76 (724)
|+ ++.+.+++ +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++......
T Consensus 2 ~~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~ 80 (272)
T PRK06142 2 MTTYESFTVEL-ADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLG 80 (272)
T ss_pred CCCcceEEEEe-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhccccc
Confidence 55 57899998 8899999999995 7999999999999999999999999999999999999999999987542110
Q ss_pred -----Cc---ccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhh
Q 004892 77 -----GD---VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ 148 (724)
Q Consensus 77 -----~~---~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~ 148 (724)
.. .........+++ ..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~ 159 (272)
T PRK06142 81 KDGLARPRTDLRREILRLQAAI-NAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQ 159 (272)
T ss_pred ccccccchHHHHHHHHHHHHHH-HHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHH
Confidence 00 001112233455 668999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCc-chHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHH
Q 004892 149 RLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVL 227 (724)
Q Consensus 149 ~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (724)
+|++++|..+|++|+++|++++|+||+++||||+|||+ +++++++.++++++++.|+.+++
T Consensus 160 ~l~~~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~~~a~~------------------ 221 (272)
T PRK06142 160 RLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKSPLAVR------------------ 221 (272)
T ss_pred HHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhCCHHHHH------------------
Confidence 99999999999999999999999999999999999985 88999999999999998875443
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 228 KLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 228 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|+.++.....+++++++.|...+..++.|+|+++++.+|++||+|+.
T Consensus 222 ------------------~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr~p~~ 270 (272)
T PRK06142 222 ------------------GTKEVLDYMRDHRVADGLRYVATWNAAMLPSKDLTEAIAAHMEKRPPEF 270 (272)
T ss_pred ------------------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence 4566777777778999999999999999999999999999999998764
No 24
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-48 Score=403.36 Aligned_cols=254 Identities=33% Similarity=0.548 Sum_probs=224.8
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCC-
Q 004892 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAG- 77 (724)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~- 77 (724)
|+ +.|.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++.......
T Consensus 1 m~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~ 78 (260)
T PRK05980 1 MT-DTVLIEI-RDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGA 78 (260)
T ss_pred CC-ceEEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccc
Confidence 66 3688888 7899999999995 7999999999999999999999999999999998 6999999999875421111
Q ss_pred --cccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhccccc
Q 004892 78 --DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (724)
Q Consensus 78 --~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G 155 (724)
....+.....+++ ..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++|
T Consensus 79 ~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG 157 (260)
T PRK05980 79 DVALRDFVRRGQAMT-ARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAG 157 (260)
T ss_pred hhhHHHHHHHHHHHH-HHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcC
Confidence 0111222233455 6689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 004892 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK 235 (724)
Q Consensus 156 ~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (724)
..+|++|+++|++++|+||+++||||+|||++++++++.++++++++.+|.+++
T Consensus 158 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~-------------------------- 211 (260)
T PRK05980 158 RKRALELLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRIIRHSPVAVA-------------------------- 211 (260)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCCHHHHH--------------------------
Confidence 999999999999999999999999999999999999999999999998875433
Q ss_pred HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhc
Q 004892 236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 293 (724)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~ 293 (724)
.+|+.++.....+++++++.|.+.+..++.|+|+++++.+|++||+|+
T Consensus 212 ----------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~ 259 (260)
T PRK05980 212 ----------AILTAVTRGLNLSIAEGLLIESEQFARMAGSADLREGLAAWIERRRPA 259 (260)
T ss_pred ----------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCC
Confidence 456777777778899999999999999999999999999999999865
No 25
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.6e-48 Score=401.52 Aligned_cols=251 Identities=31% Similarity=0.478 Sum_probs=223.6
Q ss_pred cEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCCcccccc
Q 004892 5 RVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSLMP 83 (724)
Q Consensus 5 ~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (724)
.+.++. +++|++||||||+.|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..... .....+.
T Consensus 4 ~v~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~-~~~~~~~ 81 (258)
T PRK09076 4 ELDLEI-DGHVAILTLNNPPANTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDK-AVAREMA 81 (258)
T ss_pred EEEEEE-ECCEEEEEECCCCcCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcCh-hhHHHHH
Confidence 478888 78999999999988999999999999999999999999999999998 68999999998754211 1111122
Q ss_pred hhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHH
Q 004892 84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM 163 (724)
Q Consensus 84 ~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ 163 (724)
.....++ .+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++|+
T Consensus 82 ~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ 160 (258)
T PRK09076 82 RRFGEAF-EALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMI 160 (258)
T ss_pred HHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHH
Confidence 2234455 668999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChh
Q 004892 164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ 243 (724)
Q Consensus 164 ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 243 (724)
++|++++|+||+++||||+|||++++.+++.+++++++..++.+++
T Consensus 161 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~---------------------------------- 206 (258)
T PRK09076 161 LCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQSPSAVA---------------------------------- 206 (258)
T ss_pred HcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhCCHHHHH----------------------------------
Confidence 9999999999999999999999999999999999999998875443
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 244 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|++++.....++++.++.|.+.+..++.++++++++++|++||+|++
T Consensus 207 --~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~ 255 (258)
T PRK09076 207 --ACKTLIQAARNGPRAAALALERELFVDLFDTEDQREGVNAFLEKRAPQW 255 (258)
T ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 4566777777778999999999999999999999999999999988775
No 26
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=3e-48 Score=402.08 Aligned_cols=255 Identities=33% Similarity=0.546 Sum_probs=229.1
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCCc
Q 004892 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD 78 (724)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~ 78 (724)
|+++.+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..... ..
T Consensus 1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~-~~ 78 (260)
T PRK05809 1 MELKNVILEK-EGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNE-EE 78 (260)
T ss_pred CCcceEEEEE-eCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccCh-HH
Confidence 8899999998 7899999999996 7999999999999999999999999999999999 89999999998854221 11
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHH
Q 004892 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (724)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~ 158 (724)
...+......++ +.|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..+
T Consensus 79 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 157 (260)
T PRK05809 79 GRKFGLLGNKVF-RKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGK 157 (260)
T ss_pred HHHHHHHHHHHH-HHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence 111222233455 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004892 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (724)
Q Consensus 159 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (724)
+++|+++|++++|+||+++||||+|+|++++.+.+.+++++++..++.+++
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------- 208 (260)
T PRK05809 158 AKELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANAPIAVK----------------------------- 208 (260)
T ss_pred HHHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998875433
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|+.++.+...+++++++.|.+.+..++.|+|+++++++|++||+|+.
T Consensus 209 -------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~ 257 (260)
T PRK05809 209 -------LCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKREKNF 257 (260)
T ss_pred -------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 4567788777888999999999999999999999999999999998764
No 27
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.6e-48 Score=399.42 Aligned_cols=252 Identities=25% Similarity=0.407 Sum_probs=223.8
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCCc
Q 004892 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD 78 (724)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~ 78 (724)
|+..++.++..+++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++..... ..
T Consensus 3 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~-~~ 81 (256)
T PRK06143 3 MLNAHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQ-AS 81 (256)
T ss_pred cccccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcCh-hh
Confidence 677789999757899999999995 7999999999999999999999999999999998 69999999998754221 11
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHH
Q 004892 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (724)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~ 158 (724)
...+......++ ..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+ |++|++++|++++|..+
T Consensus 82 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~ 159 (256)
T PRK06143 82 AEAFISRLRDLC-DAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWAR 159 (256)
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHH
Confidence 112223334455 6689999999999999999999999999999999999999999999998 88888999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004892 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (724)
Q Consensus 159 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (724)
|++|+++|++++|+||+++||||+|||++++.+++.++++++++.|+.+++
T Consensus 160 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------- 210 (256)
T PRK06143 160 TRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCGPQALR----------------------------- 210 (256)
T ss_pred HHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998875443
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Q 004892 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA 291 (724)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~ 291 (724)
.+|+.++.....+++++++.|.+.+..++.|+|+++++++|++||+
T Consensus 211 -------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~ 256 (256)
T PRK06143 211 -------QQKRLLREWEDMPLDVAIDDSVAEFGAAFLTGEPQRHMAAFLNRKR 256 (256)
T ss_pred -------HHHHHHHHHccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcC
Confidence 4566777777788999999999999999999999999999999875
No 28
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.3e-48 Score=398.63 Aligned_cols=252 Identities=29% Similarity=0.442 Sum_probs=223.1
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCccccc
Q 004892 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (724)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (724)
+.|.++. +++|++||||||+ .|++|.+|+++|.++++.++ +++|+|||||.|++||+|+|++++..... ......
T Consensus 2 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~-~~~~~~ 77 (255)
T PRK08150 2 SLVSYEL-DGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDA-GEGMHH 77 (255)
T ss_pred ceEEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccc-hhHHHH
Confidence 4678888 7899999999995 79999999999999999997 78999999999999999999999864221 111112
Q ss_pred chhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHH
Q 004892 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (724)
Q Consensus 83 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l 162 (724)
.....+++ .+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|
T Consensus 78 ~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l 156 (255)
T PRK08150 78 SRRWHRVF-DKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDM 156 (255)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHH
Confidence 22334555 66899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCCh
Q 004892 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (724)
Q Consensus 163 ~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (724)
+++|++++|+||+++||||+|||++++.+++.++++++++.++.+++
T Consensus 157 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------- 203 (255)
T PRK08150 157 MLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNAPLTNF--------------------------------- 203 (255)
T ss_pred HHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence 99999999999999999999999999999999999999998875433
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004892 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (724)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~~ 296 (724)
.+|+.++.....+++++++.|.+.+..++.|+|+++++.+|++||+|+.++
T Consensus 204 ---~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~~kr~p~~~~ 254 (255)
T PRK08150 204 ---AVLNALPRIADMSADDGLFVESLMAAVAQSAPEAKERLRAFLEKKAAKVKP 254 (255)
T ss_pred ---HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCC
Confidence 456677777777899999999999999999999999999999999887643
No 29
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.1e-48 Score=400.81 Aligned_cols=255 Identities=25% Similarity=0.380 Sum_probs=225.8
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCC--
Q 004892 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-- 77 (724)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~-- 77 (724)
|+|+.+.++. +++|++||||||+ .|++|.+|+++|.+++++++ |+++|+|||||.|++||+|+|++++.......
T Consensus 1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 78 (262)
T PRK08140 1 MMYETILLAI-EAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMP 78 (262)
T ss_pred CCCceEEEEe-ECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccch
Confidence 8888899998 7899999999995 79999999999999999999 99999999999999999999999875321111
Q ss_pred ccc-ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccH
Q 004892 78 DVS-LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156 (724)
Q Consensus 78 ~~~-~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~ 156 (724)
... .+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus 79 ~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~ 157 (262)
T PRK08140 79 DLGESIETFYNPLV-RRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGM 157 (262)
T ss_pred hhHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCH
Confidence 000 1111122344 67899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHH
Q 004892 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK 236 (724)
Q Consensus 157 ~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (724)
.++++|+++|++++|+||+++||||+|||++++.+++.++++++++.++.+++
T Consensus 158 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~--------------------------- 210 (262)
T PRK08140 158 ARALGLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQPTRGLA--------------------------- 210 (262)
T ss_pred HHHHHHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999998875433
Q ss_pred hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|+.++.....++.++++.|...+..++.|+++++++++|++||+|.+
T Consensus 211 ---------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~~ 259 (262)
T PRK08140 211 ---------LIKQAMNASATNTLDAQLDLERDLQREAGRSADYAEGVSAFLEKRAPRF 259 (262)
T ss_pred ---------HHHHHHHHhhhCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 4567777777778999999999999999999999999999999988764
No 30
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=8.5e-48 Score=398.91 Aligned_cols=254 Identities=23% Similarity=0.342 Sum_probs=224.1
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCccc
Q 004892 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (724)
Q Consensus 2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (724)
..+.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++..........
T Consensus 9 ~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~ 87 (266)
T PRK08139 9 EAPLLLRED-RDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFR 87 (266)
T ss_pred cCCceEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHH
Confidence 456788888 8899999999996 69999999999999999999999999999999999999999999875422111111
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHH
Q 004892 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (724)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~ 160 (724)
.+.....+++ .+|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+++ +++|+|++|..+|+
T Consensus 88 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A~ 165 (266)
T PRK08139 88 ALFARCSRVM-QAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQAM 165 (266)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHHH
Confidence 2222233455 668999999999999999999999999999999999999999999999999875 56899999999999
Q ss_pred HHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004892 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (724)
Q Consensus 161 ~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (724)
+|+++|++++|+||+++||||+|+|++++++++.++++++++.++.+++
T Consensus 166 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------- 214 (266)
T PRK08139 166 EMLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIAAKSPAAVR------------------------------- 214 (266)
T ss_pred HHHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHHhCCHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999998875443
Q ss_pred ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|+.++.....+++++++.|.+.+..++.++|+++++++|++||++++
T Consensus 215 -----~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 263 (266)
T PRK08139 215 -----IGKEAFYRQAEMPLADAYAYAGDVMAENMMAEDAEEGIDAFLEKRPPEW 263 (266)
T ss_pred -----HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 4567788877888999999999999999999999999999999988775
No 31
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-47 Score=398.29 Aligned_cols=255 Identities=25% Similarity=0.364 Sum_probs=224.0
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCC--
Q 004892 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-- 77 (724)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~-- 77 (724)
|+++.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus 1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 79 (262)
T PRK05995 1 MMYETLEIEQ-RGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDD 79 (262)
T ss_pred CCCceEEEEe-eCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCch
Confidence 8899999998 7899999999996 79999999999999999999999999999999999999999999875421111
Q ss_pred cccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHH
Q 004892 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (724)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~ 157 (724)
..........+++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++ ++++++|..
T Consensus 80 ~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vg~~ 157 (262)
T PRK05995 80 ENRADARRLADML-RAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISP-YVIRAMGER 157 (262)
T ss_pred hhhhHHHHHHHHH-HHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHH-HHHHHhCHH
Confidence 1111112234555 66899999999999999999999999999999999999999999999999988765 589999999
Q ss_pred HHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004892 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (724)
Q Consensus 158 ~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (724)
+|++|+++|++++|+||+++||||+|||++++.+++.++++++++.|+.+++
T Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------- 209 (262)
T PRK05995 158 AARRYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVANSPQAVR---------------------------- 209 (262)
T ss_pred HHHHHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999998875433
Q ss_pred CCCChhHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 238 APNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~~-l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|+.++.....++.+. ++.|...+..++.|+|+++++++|++||+|+.
T Consensus 210 --------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~~kr~p~~ 259 (262)
T PRK05995 210 --------AGKRLVRDVAGRPIDAALIADTASRIALIRATEEAREGVAAFLEKRKPAW 259 (262)
T ss_pred --------HHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 45667777667788888 88999999999999999999999999998764
No 32
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=1.1e-47 Score=396.06 Aligned_cols=251 Identities=31% Similarity=0.461 Sum_probs=224.4
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcc
Q 004892 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (724)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (724)
|| .+.+++ +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++..... .
T Consensus 1 ~~--~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~---~ 74 (255)
T PRK09674 1 MS--ELLVSR-QQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDL---A 74 (255)
T ss_pred Cc--eEEEEe-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccch---h
Confidence 55 477888 7899999999996 699999999999999999999999999999999999999999998754211 1
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004892 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (724)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a 159 (724)
..+......++ +.+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus 75 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a 153 (255)
T PRK09674 75 ATLNDPRPQLW-QRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLA 153 (255)
T ss_pred hhHHHHHHHHH-HHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHH
Confidence 11112233455 67899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004892 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (724)
Q Consensus 160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (724)
++|+++|++++|+||+++||||+|||++++.+++.++++++++.|+.+++
T Consensus 154 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~------------------------------ 203 (255)
T PRK09674 154 SQMVLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARHSPLALR------------------------------ 203 (255)
T ss_pred HHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875433
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|+.++.....++.+.++.|.+.+..++.++++++++++|++||+|++
T Consensus 204 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~i~af~~kr~p~~ 252 (255)
T PRK09674 204 ------AAKQALRQSQEVDLQAGLAQERQLFTLLAATEDRHEGISAFLEKRTPDF 252 (255)
T ss_pred ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence 4566777777788999999999999999999999999999999988764
No 33
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.2e-48 Score=397.01 Aligned_cols=251 Identities=24% Similarity=0.344 Sum_probs=220.2
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccch
Q 004892 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84 (724)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (724)
|.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++....... ...+..
T Consensus 1 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~-~~~~~~ 78 (255)
T PRK06563 1 VSRER-RGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAG-GFPFPE 78 (255)
T ss_pred CeEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccc-hhhhhh
Confidence 35677 7899999999995 79999999999999999999999999999999999999999999885421111 111111
Q ss_pred hHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHH
Q 004892 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML 164 (724)
Q Consensus 85 ~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~l 164 (724)
...+.+...+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|..+|++|++
T Consensus 79 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l 158 (255)
T PRK06563 79 GGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLL 158 (255)
T ss_pred hhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHH
Confidence 12233323578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhH
Q 004892 165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (724)
Q Consensus 165 tg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (724)
||++++|+||+++||||+|+|++++.+++.++++++++.++.+++
T Consensus 159 tg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------------- 203 (255)
T PRK06563 159 TGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIARAAPLGVQ----------------------------------- 203 (255)
T ss_pred cCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHhcCHHHHH-----------------------------------
Confidence 999999999999999999999999999999999999988875433
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|+.++.....++.++++.|...+..++.++|+++++++|++||+|..
T Consensus 204 -~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 252 (255)
T PRK06563 204 -ATLASARAAVREGEAAAAAQLPPELRPLFTSEDAKEGVQAFLERRPARF 252 (255)
T ss_pred -HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 3466777776778999999999999999999999999999999998764
No 34
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-47 Score=399.32 Aligned_cols=256 Identities=24% Similarity=0.330 Sum_probs=226.6
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCC-CceEEEEEcCCCCccCCCCchhhhhccCCC-
Q 004892 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRD-DVKAIVLTGNGGRFSGGFDINVFQKVHGAG- 77 (724)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~-~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~- 77 (724)
|+|+.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+ ++|+|||||.|++||+|+|++++.......
T Consensus 1 ~~~~~v~~~~-~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~ 79 (266)
T PRK05981 1 MQFKKVTLDF-DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESD 79 (266)
T ss_pred CCcceEEEEe-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhccccccc
Confidence 8999999999 7899999999995 79999999999999999999876 499999999999999999999875422111
Q ss_pred ---c-ccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhccc
Q 004892 78 ---D-VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL 153 (724)
Q Consensus 78 ---~-~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~ 153 (724)
. ...+......++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~ 158 (266)
T PRK05981 80 SGGDAGAALETAYHPFL-RRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRL 158 (266)
T ss_pred ccchhHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHH
Confidence 0 011112233455 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHH
Q 004892 154 VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQ 233 (724)
Q Consensus 154 ~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (724)
+|+.++++|+++|++++|+||+++||||+|+|++++++++.++++++++.|+.+++
T Consensus 159 vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~------------------------ 214 (266)
T PRK05981 159 VGKARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELANGPTVALG------------------------ 214 (266)
T ss_pred hHHHHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcCCHHHHH------------------------
Confidence 99999999999999999999999999999999999999999999999988764433
Q ss_pred HHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 234 AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 234 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|++++.....++.++++.|...+..++.|+|+++++.+|++||+++.
T Consensus 215 ------------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~ 263 (266)
T PRK05981 215 ------------LIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKRPAQF 263 (266)
T ss_pred ------------HHHHHHHHhhhcCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 3466777777778999999999999999999999999999999998774
No 35
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.4e-47 Score=397.17 Aligned_cols=257 Identities=20% Similarity=0.268 Sum_probs=221.1
Q ss_pred CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCc
Q 004892 1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (724)
Q Consensus 1 M~-~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (724)
|+ |+++.++.++++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++........
T Consensus 1 ~~~~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~ 80 (265)
T PRK05674 1 MSDFQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDY 80 (265)
T ss_pred CCCcceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccc
Confidence 45 8899999844789999999995 799999999999999999999999999999999999999999998754211110
Q ss_pred ccc--cchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccH
Q 004892 79 VSL--MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156 (724)
Q Consensus 79 ~~~--~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~ 156 (724)
... ......+++ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++ ++++++|.
T Consensus 81 ~~~~~~~~~~~~~~-~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~ 158 (265)
T PRK05674 81 NTNLDDARELAELM-YNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGE 158 (265)
T ss_pred hhhhHHHHHHHHHH-HHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCH
Confidence 011 112233455 66899999999999999999999999999999999999999999999999988765 48899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHH
Q 004892 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK 236 (724)
Q Consensus 157 ~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (724)
.++++|++||++++|+||+++||||+|||++++.+++.+++.++++.++.+++
T Consensus 159 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~--------------------------- 211 (265)
T PRK05674 159 RAARRYALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLLLNSPQALR--------------------------- 211 (265)
T ss_pred HHHHHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcCHHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999998875543
Q ss_pred hCCCChhHHHHHHHHHHhhcCCHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004892 237 TAPNMPQHQACLDVIEEGIVHGGYSGVLK-EAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (724)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~-E~~~~~~~~~s~~~~~~~~af~~~r~~~~~ 295 (724)
.+|+.++.....++++++.. +.+.+..++.|+++++++++|++||+|++.
T Consensus 212 ---------~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~~kr~p~~~ 262 (265)
T PRK05674 212 ---------ASKDLLREVGDGELSPALRRYCENAIARIRVSAEGQEGLRAFLEKRTPAWQ 262 (265)
T ss_pred ---------HHHHHHHHhhccChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCCCCCC
Confidence 44667777777778888765 456788899999999999999999987753
No 36
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-47 Score=398.22 Aligned_cols=255 Identities=27% Similarity=0.357 Sum_probs=224.4
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCH-HHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCC-
Q 004892 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAI-PIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG- 77 (724)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~-~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~- 77 (724)
|| +.+.++. +++|++||||||+ .|++|. +|+++|.+++++++.|+++|+|||+|.|++||+|+|++++.......
T Consensus 1 m~-~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (266)
T PRK09245 1 MT-DFLLVER-DGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFG 78 (266)
T ss_pred CC-CceEEEE-ECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhcccccc
Confidence 66 3588888 7899999999996 699995 99999999999999999999999999999999999999885422110
Q ss_pred -ccc----ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcc
Q 004892 78 -DVS----LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPR 152 (724)
Q Consensus 78 -~~~----~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r 152 (724)
... .+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++
T Consensus 79 ~~~~~~~~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~ 157 (266)
T PRK09245 79 GSPADIRQGYRHGIQRIP-LALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPR 157 (266)
T ss_pred ccchhHHHHHHHHHHHHH-HHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHH
Confidence 000 1111123445 5689999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHH
Q 004892 153 LVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARL 232 (724)
Q Consensus 153 ~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (724)
++|..+|++|+++|++++|+||+++||||+|+|++++++++.++++++++.|+.+++
T Consensus 158 ~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~----------------------- 214 (266)
T PRK09245 158 IIGMARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIAANPPHALR----------------------- 214 (266)
T ss_pred HhhHHHHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH-----------------------
Confidence 999999999999999999999999999999999999999999999999999875443
Q ss_pred HHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 233 QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 233 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|+.++.....++++.++.|.+.+..++.|+|+++++++|++||+|.+
T Consensus 215 -------------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 263 (266)
T PRK09245 215 -------------LTKRLLREGQHASLDTLLELSAAYQALAHHTADHREAVDAFLEKRPPVF 263 (266)
T ss_pred -------------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHHcCCCCCC
Confidence 4566777777778999999999999999999999999999999998764
No 37
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-47 Score=395.76 Aligned_cols=253 Identities=32% Similarity=0.472 Sum_probs=223.8
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCC-Ccc
Q 004892 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-GDV 79 (724)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~-~~~ 79 (724)
|+|+.+.++. +++|++||||||+.|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|+|++++...... ...
T Consensus 1 ~~~~~i~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~ 79 (257)
T PRK06495 1 MMMSQLKLEV-SDHVAVVTLDNPPVNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDL 79 (257)
T ss_pred CCcceEEEEe-eCCEEEEEECCCccccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhH
Confidence 8899999998 78999999999988999999999999999999999999999999999999999999987542111 111
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004892 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (724)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a 159 (724)
........+++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++ |+++++++++|..+|
T Consensus 80 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a 155 (257)
T PRK06495 80 RAHNRRTRECF-HAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLT 155 (257)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHH
Confidence 11122233455 66899999999999999999999999999999999999999999999996 456789999999999
Q ss_pred HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004892 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (724)
Q Consensus 160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (724)
++|+++|++++|+||+++||||+|||++++.+++.++++++++.|+.+++
T Consensus 156 ~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~------------------------------ 205 (257)
T PRK06495 156 RRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASKSPLATR------------------------------ 205 (257)
T ss_pred HHHHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999876543
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|+.++.....+++++++.|...+..++.|+|+++++++|++||+|++
T Consensus 206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr~p~~ 254 (257)
T PRK06495 206 ------LAKDALNTIENMSLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKRPPVF 254 (257)
T ss_pred ------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhccCCCCC
Confidence 3456677777778999999999999999999999999999999998774
No 38
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-47 Score=395.56 Aligned_cols=251 Identities=32% Similarity=0.470 Sum_probs=223.7
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCccccc
Q 004892 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (724)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (724)
+++.++..+++|++||||||+ .|++|.+|+.+|.++++.+++|+++|+|||||.|++||+|+|++++..... ...+
T Consensus 7 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~---~~~~ 83 (261)
T PRK08138 7 DVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGA---IEMY 83 (261)
T ss_pred CCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccch---hHHH
Confidence 467888756889999999996 699999999999999999999999999999999999999999998764211 1112
Q ss_pred chhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHH
Q 004892 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (724)
Q Consensus 83 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l 162 (724)
.....+++ +.+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..++++|
T Consensus 84 ~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l 162 (261)
T PRK08138 84 LRHTERYW-EAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRM 162 (261)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHH
Confidence 22234455 67899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCCh
Q 004892 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (724)
Q Consensus 163 ~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (724)
+++|++++|+||+++||||+|||++++.+++.++++++++.++.++
T Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~---------------------------------- 208 (261)
T PRK08138 163 ALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIARMPPLAL---------------------------------- 208 (261)
T ss_pred HHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHhCCHHHH----------------------------------
Confidence 9999999999999999999999999999999999999998776432
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
..+|+.++.....+++++++.|.+.+..++.|+++++++++|++||++++
T Consensus 209 --~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~~kr~~~~ 258 (261)
T PRK08138 209 --AQIKEVVLAGADAPLDAALALERKAFQLLFDSEDQKEGMDAFLEKRKPAY 258 (261)
T ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 24567777777788999999999999999999999999999999988764
No 39
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-47 Score=396.42 Aligned_cols=255 Identities=30% Similarity=0.492 Sum_probs=226.0
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCCc
Q 004892 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD 78 (724)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~ 78 (724)
|+ ++|.+++.+++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..... ..
T Consensus 1 ~~-~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~-~~ 78 (260)
T PRK07657 1 ML-QNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNE-EQ 78 (260)
T ss_pred CC-ceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCCh-hh
Confidence 66 478888646899999999996 7999999999999999999999999999999999 49999999998754211 11
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHH
Q 004892 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (724)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~ 158 (724)
...+......++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus 79 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~ 157 (260)
T PRK07657 79 VRHAVSLIRTTM-EMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGR 157 (260)
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHH
Confidence 112222334555 6789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004892 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (724)
Q Consensus 159 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (724)
+++|+++|++++|+||+++||||+|||++++++++.+++++++..++.+++
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~----------------------------- 208 (260)
T PRK07657 158 AKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNGPIAVR----------------------------- 208 (260)
T ss_pred HHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998875433
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|+.++.....+++++++.|.+.+..++.|+++++++++|+++|+++.
T Consensus 209 -------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r~~~~ 257 (260)
T PRK07657 209 -------QAKEAISNGIQVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRKPMY 257 (260)
T ss_pred -------HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence 4567777777788999999999999999999999999999999988764
No 40
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.2e-47 Score=395.57 Aligned_cols=256 Identities=23% Similarity=0.312 Sum_probs=221.8
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcc
Q 004892 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (724)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (724)
|+|+.+.++.++++|++||||||+ .|++|.+|+++|.++++.++.|+++++|||||.|++||+|+|++++.........
T Consensus 1 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 80 (262)
T PRK07468 1 MMFETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRA 80 (262)
T ss_pred CCcceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchh
Confidence 778888998833689999999995 7999999999999999999999999999999999999999999987532111111
Q ss_pred --cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHH
Q 004892 80 --SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (724)
Q Consensus 80 --~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~ 157 (724)
.........++ +.|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++ +++|..
T Consensus 81 ~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~-~~vG~~ 158 (262)
T PRK07468 81 TRIEEARRLAMML-KALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVV-ARMGEA 158 (262)
T ss_pred hHHHHHHHHHHHH-HHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHH-hhccHH
Confidence 11112233445 67999999999999999999999999999999999999999999999999999998855 559999
Q ss_pred HHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004892 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (724)
Q Consensus 158 ~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (724)
++++|+++|++++|+||+++||||+|+|++++.+++.++++++++.++.+++
T Consensus 159 ~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~---------------------------- 210 (262)
T PRK07468 159 NARRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCAPGAVA---------------------------- 210 (262)
T ss_pred HHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999998875443
Q ss_pred CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|+.++.......++.++.|...+..++.|+|+++++++|++||++++
T Consensus 211 --------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~ 259 (262)
T PRK07468 211 --------AAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKRAPAW 259 (262)
T ss_pred --------HHHHHHHhhhccChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence 3456666655556788899999999999999999999999999998775
No 41
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-47 Score=395.15 Aligned_cols=252 Identities=31% Similarity=0.433 Sum_probs=222.1
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCCc
Q 004892 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD 78 (724)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~ 78 (724)
|+++.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++.......
T Consensus 1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~- 78 (259)
T PRK06494 1 MALPFSTVER-KGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRG- 78 (259)
T ss_pred CCCceeEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcch-
Confidence 8889999998 7899999999996 6999999999999999999999999999999998 6999999999875421111
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHH
Q 004892 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (724)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~ 158 (724)
. .......+. . +.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus 79 ~--~~~~~~~~~-~-~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~ 154 (259)
T PRK06494 79 W--PESGFGGLT-S-RFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKR 154 (259)
T ss_pred h--hhHHHHHHH-H-HhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHH
Confidence 0 011122222 3 56899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004892 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (724)
Q Consensus 159 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (724)
|++|+++|++++|+||+++||||+|||++++++++.+++++++..|+.+++
T Consensus 155 a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------- 205 (259)
T PRK06494 155 AMGMILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILACSPLSIR----------------------------- 205 (259)
T ss_pred HHHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998875443
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHH--HHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 239 PNMPQHQACLDVIEEGIVHGGYSGVLKE--AKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E--~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|+.++.....+++++++.| ...+..++.|+|+++++.+|++||++++
T Consensus 206 -------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr~p~~ 256 (259)
T PRK06494 206 -------ASKQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKRPPRW 256 (259)
T ss_pred -------HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCC
Confidence 456677777777889999999 5578899999999999999999887764
No 42
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=3.8e-47 Score=393.52 Aligned_cols=253 Identities=28% Similarity=0.467 Sum_probs=223.4
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccc
Q 004892 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (724)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (724)
.+.+.++..+++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.+.....
T Consensus 8 ~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~---- 83 (265)
T PLN02888 8 ENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGD---- 83 (265)
T ss_pred CCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccch----
Confidence 4567777546889999999996 79999999999999999999999999999999999999999999875321111
Q ss_pred cchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHH
Q 004892 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (724)
Q Consensus 82 ~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~ 161 (724)
......+.+ ..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..+|++
T Consensus 84 ~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~ 162 (265)
T PLN02888 84 VKDVETDPV-AQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRARE 162 (265)
T ss_pred hhHHHHHHH-HHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHH
Confidence 111123445 5688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCC
Q 004892 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241 (724)
Q Consensus 162 l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (724)
|+++|++++|+||+++||||+|||++++.+++.++++++++.++.+++
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------- 210 (265)
T PLN02888 163 VSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNNQGMVL-------------------------------- 210 (265)
T ss_pred HHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence 999999999999999999999999999999999999999998875443
Q ss_pred hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHhhhhcCCC
Q 004892 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELV--MLDTSRGLVHVFFAQRATSKVP 296 (724)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~--~s~~~~~~~~af~~~r~~~~~~ 296 (724)
.+|+.++.....++++++..|.+.+..++ .++++++++++|++||+++|.|
T Consensus 211 ----~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~ekr~~~~~~ 263 (265)
T PLN02888 211 ----RYKSVINDGLKLDLGHALQLEKERAHDYYNGMTKEQFQKMQEFIAGRSSKKPS 263 (265)
T ss_pred ----HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCC
Confidence 45677777777789999999998888885 5999999999999999998865
No 43
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.2e-47 Score=398.27 Aligned_cols=256 Identities=27% Similarity=0.372 Sum_probs=225.8
Q ss_pred CCCCcEEEEEecC-cEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCc
Q 004892 1 MAAPRVTMEVGND-GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (724)
Q Consensus 1 M~~~~v~~~~~~~-~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (724)
|.|+.+.+++ ++ +|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|+|++++........
T Consensus 2 ~~~~~i~~~~-~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~ 80 (272)
T PRK06210 2 MAYDAVLYEV-ADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDG 80 (272)
T ss_pred CCcceEEEEE-CCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccc
Confidence 7889999999 67 99999999995 799999999999999999999999999999999999999999998764221110
Q ss_pred c-----cccch----hHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhh
Q 004892 79 V-----SLMPD----VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQR 149 (724)
Q Consensus 79 ~-----~~~~~----~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~ 149 (724)
. ..+.. ..++.+ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~ 159 (272)
T PRK06210 81 RRDTDVRPFVGNRRPDYQTRY-HFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWI 159 (272)
T ss_pred cccccchhhhhhhhhhHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhh
Confidence 0 00100 123344 5688999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHcc-CchhhhhhhccCCCCCcHHHHHHHH
Q 004892 150 LPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSEAREVLK 228 (724)
Q Consensus 150 l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (724)
|++++|+.++++|+++|++++|+||+++||||+|+|++++.+++.++++++++. ++.++.
T Consensus 160 l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~p~a~~------------------- 220 (272)
T PRK06210 160 LPRLVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSPASMA------------------- 220 (272)
T ss_pred hHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCCHHHHH-------------------
Confidence 999999999999999999999999999999999999999999999999999975 664332
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 229 LARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 229 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|+.++.....+++++++.|...+..++.|+++++++++|++||+|.+
T Consensus 221 -----------------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~ 269 (272)
T PRK06210 221 -----------------VIKRQLYEDAFQTLAEATARANREMHESLQRPDFIEGVASFLEKRPPRF 269 (272)
T ss_pred -----------------HHHHHHHhcccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Confidence 4567777777778999999999999999999999999999999998765
No 44
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.8e-47 Score=395.27 Aligned_cols=253 Identities=25% Similarity=0.349 Sum_probs=222.4
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccc
Q 004892 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (724)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (724)
++.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++...........
T Consensus 4 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 82 (263)
T PRK07799 4 GPHALVEQ-RGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKD 82 (263)
T ss_pred CceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhh
Confidence 45788888 7899999999996 699999999999999999999999999999999999999999999864321111110
Q ss_pred --c-chhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHH
Q 004892 82 --M-PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (724)
Q Consensus 82 --~-~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~ 158 (724)
. .... ..+ ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus 83 ~~~~~~~~-~~~-~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 160 (263)
T PRK07799 83 GSYDPSRI-DAL-LKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTV 160 (263)
T ss_pred hhhhhhHH-HHH-HHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHH
Confidence 0 0111 223 2378999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004892 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (724)
Q Consensus 159 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (724)
|++|+++|++++|+||+++||||+|||++++++++.++++++++.|+.+++
T Consensus 161 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~a~~----------------------------- 211 (263)
T PRK07799 161 ACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINANGPLAVQ----------------------------- 211 (263)
T ss_pred HHHHHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHHhcChHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998875433
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|+.++.....++.++++.|.+.+..++.++++++++++|++||+|++
T Consensus 212 -------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~ 260 (263)
T PRK07799 212 -------AILRTIRETEGMHENEAFKIDTKIGIPVFLSEDAKEGPRAFAEKRAPNF 260 (263)
T ss_pred -------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCC
Confidence 4567777777788999999999999999999999999999999988764
No 45
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=1.7e-47 Score=393.48 Aligned_cols=245 Identities=30% Similarity=0.475 Sum_probs=218.7
Q ss_pred cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC-CCCccCCCCchhhhhccCCCcccccchhHHHH
Q 004892 12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL 89 (724)
Q Consensus 12 ~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (724)
+++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||. |++||+|+|++++..... .....+......+
T Consensus 2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~-~~~~~~~~~~~~~ 80 (251)
T PLN02600 2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSP-SEVQKFVNSLRST 80 (251)
T ss_pred CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccCh-HHHHHHHHHHHHH
Confidence 5789999999995 799999999999999999999999999999998 589999999998754211 1111222233444
Q ss_pred HHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCC
Q 004892 90 VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169 (724)
Q Consensus 90 ~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i 169 (724)
+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++|++||+++
T Consensus 81 ~-~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~ 159 (251)
T PLN02600 81 F-SSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRI 159 (251)
T ss_pred H-HHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCcc
Confidence 5 568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 004892 170 TSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLD 249 (724)
Q Consensus 170 ~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 249 (724)
+|+||+++||||+|||++++++++.++++++++.|+.+++ .+|+
T Consensus 160 ~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~p~a~~------------------------------------~~K~ 203 (251)
T PLN02600 160 GAREAASMGLVNYCVPAGEAYEKALELAQEINQKGPLAIK------------------------------------MAKK 203 (251)
T ss_pred CHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------------HHHH
Confidence 9999999999999999999999999999999999875443 4567
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 250 VIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 250 ~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.++.....+++++++.|...+..++.|+|+++++++|++||+|+.
T Consensus 204 ~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~ 248 (251)
T PLN02600 204 AINEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAFAEKRKPVY 248 (251)
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCC
Confidence 777777788999999999999999999999999999999998764
No 46
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.9e-47 Score=394.66 Aligned_cols=255 Identities=24% Similarity=0.313 Sum_probs=225.9
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccC-C-C
Q 004892 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG-A-G 77 (724)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~-~-~ 77 (724)
||+ .+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||+|.|++||+|+|++++..... . .
T Consensus 1 ~~~-~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~ 78 (260)
T PRK07511 1 MSA-ELLSRR-EGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPS 78 (260)
T ss_pred CCC-eeEEEe-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccch
Confidence 774 477888 7899999999995 799999999999999999999999999999999999999999998854211 1 1
Q ss_pred cccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHH
Q 004892 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (724)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~ 157 (724)
....+.....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 79 ~~~~~~~~~~~~~-~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~ 157 (260)
T PRK07511 79 VQAASIDGLHDWI-RAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQ 157 (260)
T ss_pred hHHHHHHHHHHHH-HHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHH
Confidence 1112223344555 678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004892 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (724)
Q Consensus 158 ~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (724)
++++|+++|++++++||+++||||+|||++++.+++.++++++++.++.++.
T Consensus 158 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~~~~---------------------------- 209 (260)
T PRK07511 158 LATELLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAAGSPNALA---------------------------- 209 (260)
T ss_pred HHHHHHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999988764332
Q ss_pred CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|+.++.....++.++++.|.+.+..++.|+++++++++|+++|++++
T Consensus 210 --------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r~~~~ 258 (260)
T PRK07511 210 --------RIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAAFLEKRAPDY 258 (260)
T ss_pred --------HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhccCCCCC
Confidence 4567777777788999999999999999999999999999999998764
No 47
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=3e-47 Score=394.30 Aligned_cols=253 Identities=24% Similarity=0.344 Sum_probs=222.1
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCCcc
Q 004892 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDV 79 (724)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~ 79 (724)
|+. .+.++. +++|++||||||+.|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++.......
T Consensus 1 ~~~-~i~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~-- 76 (261)
T PRK03580 1 MSE-SLHTTR-NGSILEITLDRPKANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPD-- 76 (261)
T ss_pred CCc-eEEEEE-ECCEEEEEECCccccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcch--
Confidence 664 588888 78999999999988999999999999999999999999999999998 6999999999875422111
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004892 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (724)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a 159 (724)
..+.......+ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..++
T Consensus 77 ~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a 155 (261)
T PRK03580 77 ADFGPGGFAGL-TEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIA 155 (261)
T ss_pred hhhhhhhhHHH-HHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHH
Confidence 11111122344 56899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004892 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (724)
Q Consensus 160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (724)
++++++|++++|+||+++||||+|+|++++.+++.++++++++.++.+++
T Consensus 156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 205 (261)
T PRK03580 156 NEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSAPLAIA------------------------------ 205 (261)
T ss_pred HHHHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875443
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHH----HHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAK----VFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~----~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|+.++.....+++++++.|.. .+..++.|+|+++++++|++||++++
T Consensus 206 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr~~~~ 258 (261)
T PRK03580 206 ------ALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKRDPVW 258 (261)
T ss_pred ------HHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence 45667777777788898888874 78889999999999999999988764
No 48
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=2.2e-47 Score=394.38 Aligned_cols=250 Identities=26% Similarity=0.383 Sum_probs=220.2
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCC-Ccc-ccc
Q 004892 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-GDV-SLM 82 (724)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~-~~~-~~~ 82 (724)
|.++. +++|++||||||+ .|++|.+|+.+|.++++.+++|+ +|+|||||.|++||+|+|++++...... .+. ..+
T Consensus 1 ~~~e~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T TIGR02280 1 ILSAL-EAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTI 78 (256)
T ss_pred CeEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHH
Confidence 35677 7899999999995 79999999999999999999998 9999999999999999999987542111 110 111
Q ss_pred chhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHH
Q 004892 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (724)
Q Consensus 83 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l 162 (724)
......++ +.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..++++|
T Consensus 79 ~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l 157 (256)
T TIGR02280 79 ETFYNPLV-RRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGL 157 (256)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHH
Confidence 11122344 66899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCCh
Q 004892 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (724)
Q Consensus 163 ~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (724)
+++|++++|+||+++||||+|+|++++.+++.++++++++.|+..++
T Consensus 158 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~--------------------------------- 204 (256)
T TIGR02280 158 AMLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQPTRGLA--------------------------------- 204 (256)
T ss_pred HHcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence 99999999999999999999999999999999999999998875433
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|+.++.....++.++++.|...+..++.|+|+++++++|++||+|++
T Consensus 205 ---~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 253 (256)
T TIGR02280 205 ---LTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKRNPQF 253 (256)
T ss_pred ---HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCCCCCC
Confidence 4567777777778999999999999999999999999999999998775
No 49
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=3.3e-47 Score=396.08 Aligned_cols=250 Identities=23% Similarity=0.326 Sum_probs=218.2
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCC-c--c
Q 004892 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-D--V 79 (724)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~-~--~ 79 (724)
+++.+++ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++....... . .
T Consensus 8 ~~i~~~~-~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 86 (275)
T PRK09120 8 DTVKVEV-EDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQ 86 (275)
T ss_pred ccEEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHH
Confidence 4588888 7899999999995 79999999999999999999999999999999999999999999874321111 1 1
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004892 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (724)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a 159 (724)
.........++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|
T Consensus 87 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a 165 (275)
T PRK09120 87 ERIRREAYGWW-RRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDA 165 (275)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHH
Confidence 11111223445 66899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004892 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (724)
Q Consensus 160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (724)
++|+++|++++|+||+++||||+|||++++++++.+++++|++.|+.+++
T Consensus 166 ~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~------------------------------ 215 (275)
T PRK09120 166 LYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLEKNPVVLR------------------------------ 215 (275)
T ss_pred HHHHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875443
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHH--HHHHHhCCH-HHHHHHHHHHHhhh
Q 004892 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAK--VFKELVMLD-TSRGLVHVFFAQRA 291 (724)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~--~~~~~~~s~-~~~~~~~af~~~r~ 291 (724)
.+|+.++.....++.+.++.|.. .+..++.++ |+++++++|++||.
T Consensus 216 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~d~~eg~~afl~kr~ 264 (275)
T PRK09120 216 ------AAKDGFKRVRELTWDQAEDYLYAKLEQANSLDPEGGREEGLKQFLDDKS 264 (275)
T ss_pred ------HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhccc
Confidence 45677777777788888888764 355678898 89999999999888
No 50
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.4e-47 Score=395.33 Aligned_cols=254 Identities=25% Similarity=0.412 Sum_probs=224.4
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCCc-c
Q 004892 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD-V 79 (724)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~-~ 79 (724)
.+.|.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||+|.| ++||+|+|++++.......+ .
T Consensus 10 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 88 (269)
T PRK06127 10 TGKLLAEK-TGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAV 88 (269)
T ss_pred CCceEEEE-ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHH
Confidence 35788888 7899999999995 7999999999999999999999999999999998 79999999998754211111 1
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004892 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (724)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a 159 (724)
..+......++ ..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus 89 ~~~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 167 (269)
T PRK06127 89 AAYEQAVEAAQ-AALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAA 167 (269)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHH
Confidence 12222233445 66899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004892 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (724)
Q Consensus 160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (724)
++|+++|++++|+||+++||||+|||++++++++.++|++++..++.+++
T Consensus 168 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------ 217 (269)
T PRK06127 168 KDLFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIAGNAPLTLR------------------------------ 217 (269)
T ss_pred HHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998775433
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|+.++.....++++.++.|...+..++.|+|+++++.+|++||+|++
T Consensus 218 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~ 266 (269)
T PRK06127 218 ------AAKRAIAELLKDEPERDMAACQALVAACFDSEDYREGRAAFMEKRKPVF 266 (269)
T ss_pred ------HHHHHHHHhccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCC
Confidence 3566777777778999999999999999999999999999999998775
No 51
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.7e-47 Score=396.81 Aligned_cols=252 Identities=30% Similarity=0.427 Sum_probs=223.2
Q ss_pred cEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCc---cc
Q 004892 5 RVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD---VS 80 (724)
Q Consensus 5 ~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~---~~ 80 (724)
.+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++........ ..
T Consensus 18 ~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~ 96 (277)
T PRK08258 18 HFLWEV-DDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELL 96 (277)
T ss_pred ceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHH
Confidence 678888 7899999999995 799999999999999999999999999999999999999999998743211111 11
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccC-CcchhhhhcccccHHHH
Q 004892 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIP-GFGGTQRLPRLVGLSKA 159 (724)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P-~~g~~~~l~r~~G~~~a 159 (724)
.+.....+++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|++++|..+|
T Consensus 97 ~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a 175 (277)
T PRK08258 97 AFTRMTGDLV-KAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRA 175 (277)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHH
Confidence 1222233455 678999999999999999999999999999999999999999999999995 78899999999999999
Q ss_pred HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004892 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (724)
Q Consensus 160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (724)
++|+++|++++|+||+++||||+|||++++++++.++++++++.|+.+++
T Consensus 176 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 225 (277)
T PRK08258 176 SELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLAAGPTFAHG------------------------------ 225 (277)
T ss_pred HHHHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875443
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|+.++.....+++++++.|.+.+..++.|+|+++++++|++||++++
T Consensus 226 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~ 274 (277)
T PRK08258 226 ------MTKTMLHQEWDMGLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKRKPVF 274 (277)
T ss_pred ------HHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 4567777777788999999999999999999999999999999998875
No 52
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5e-47 Score=391.01 Aligned_cols=250 Identities=28% Similarity=0.410 Sum_probs=220.3
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcc
Q 004892 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (724)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (724)
|+ +.+.+++ +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.......
T Consensus 1 ~~-~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-- 76 (254)
T PRK08252 1 MS-DEVLVER-RGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPS-- 76 (254)
T ss_pred CC-ceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchh--
Confidence 55 4688888 7899999999996 69999999999999999999999999999999999999999999886421110
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004892 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (724)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a 159 (724)
........++ ...+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|
T Consensus 77 -~~~~~~~~~~---~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a 152 (254)
T PRK08252 77 -IPGRGFGGLT---ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIA 152 (254)
T ss_pred -hhHHHHHHHH---HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHH
Confidence 1111111222 247999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004892 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (724)
Q Consensus 160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (724)
++|+++|++++|+||+++||||+|||++++++++.++++++++.|+.+++
T Consensus 153 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------ 202 (254)
T PRK08252 153 MELALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIAANGPLAVA------------------------------ 202 (254)
T ss_pred HHHHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875433
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|+.++.....++++.++.|...+..++.++|+++++.+|++||+|++
T Consensus 203 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~ 251 (254)
T PRK08252 203 ------ASKRIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAFAEKRAPVW 251 (254)
T ss_pred ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 4566777777778899999999999999999999999999999887764
No 53
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.1e-47 Score=390.89 Aligned_cols=247 Identities=26% Similarity=0.351 Sum_probs=215.5
Q ss_pred EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchh
Q 004892 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (724)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (724)
+..+..+++|++||||||+.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...............
T Consensus 3 ~~~~~~~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 82 (249)
T PRK07938 3 ITSTTPEPGIAEVTVDYPPVNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRG 82 (249)
T ss_pred eeecccCCCEEEEEECCCCcccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHH
Confidence 55554478999999999988999999999999999999999999999999999999999999987542111111111122
Q ss_pred HHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHc
Q 004892 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL 165 (724)
Q Consensus 86 ~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~lt 165 (724)
..+++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++ |++++|++++|..++++|+++
T Consensus 83 ~~~~~-~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~lt 158 (249)
T PRK07938 83 CFAAF-RAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFT 158 (249)
T ss_pred HHHHH-HHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHh
Confidence 33455 66899999999999999999999999999999999999999999999986 456789999999999999999
Q ss_pred CCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhHH
Q 004892 166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245 (724)
Q Consensus 166 g~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 245 (724)
|++++|+||+++||||+|||++++++++.+++++++..++..++
T Consensus 159 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------------ 202 (249)
T PRK07938 159 AATITAAELHHFGSVEEVVPRDQLDEAALEVARKIAAKDTRVIR------------------------------------ 202 (249)
T ss_pred CCcCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------------
Confidence 99999999999999999999999999999999999998875443
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhh
Q 004892 246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT 292 (724)
Q Consensus 246 ~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~ 292 (724)
.+|+.++.....+++++++.|...+..++.++|++|++++|++||+|
T Consensus 203 ~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p 249 (249)
T PRK07938 203 AAKEALNGIDPQDVERSYRWEQGFTFELNLAGVSDEHRDAFVEKRKA 249 (249)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCC
Confidence 45667777777788999999999999999999999999999999875
No 54
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=4.3e-47 Score=395.87 Aligned_cols=246 Identities=25% Similarity=0.420 Sum_probs=217.4
Q ss_pred cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCC---Cc-------cc
Q 004892 12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA---GD-------VS 80 (724)
Q Consensus 12 ~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~---~~-------~~ 80 (724)
+++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++...... .+ ..
T Consensus 15 ~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 94 (275)
T PLN02664 15 NSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLR 94 (275)
T ss_pred CCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhhHHHHH
Confidence 6889999999995 7999999999999999999999999999999999999999999988542110 00 00
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHH
Q 004892 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (724)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~ 160 (724)
.+.....+++ +.|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|+
T Consensus 95 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~ 173 (275)
T PLN02664 95 RKIKFLQDAI-TAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGYGNAM 173 (275)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCHHHHH
Confidence 1111223445 568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHCCCcceecCc-chHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004892 161 EMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (724)
Q Consensus 161 ~l~ltg~~i~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (724)
+|++||++++|+||+++||||+|||+ +++.+++.+++++|++.++.+++
T Consensus 174 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~p~a~~------------------------------ 223 (275)
T PLN02664 174 ELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKSPLAVT------------------------------ 223 (275)
T ss_pred HHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999985 88999999999999999875443
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|++++.....++.++++.|...+..++.|+|++|++++|++||+|.+
T Consensus 224 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~ 272 (275)
T PLN02664 224 ------GTKAVLLRSRELSVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKRKPVF 272 (275)
T ss_pred ------HHHHHHHHHhcCCHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCC
Confidence 4466777777778999999999999999999999999999999998775
No 55
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.3e-47 Score=391.50 Aligned_cols=251 Identities=31% Similarity=0.446 Sum_probs=225.0
Q ss_pred CcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCccccc
Q 004892 4 PRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (724)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (724)
+.+.++. +++|++|+|||| +.|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|+|++++....... ..+
T Consensus 5 ~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~--~~~ 81 (259)
T PRK06688 5 TDLLVEL-EDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKP--PDE 81 (259)
T ss_pred CceEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcch--HHH
Confidence 4688888 789999999999 589999999999999999999999999999999999999999999886532211 122
Q ss_pred chhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHH
Q 004892 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (724)
Q Consensus 83 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l 162 (724)
.....+++ +.+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|+++++++++|..+|++|
T Consensus 82 ~~~~~~~~-~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l 160 (259)
T PRK06688 82 LAPVNRFL-RAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEM 160 (259)
T ss_pred HHHHHHHH-HHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHHH
Confidence 33344566 67899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCCh
Q 004892 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (724)
Q Consensus 163 ~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (724)
+++|++++|+||+++||||+|+|++++.+++.++++++++.++.+++
T Consensus 161 ~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~~~~a~~--------------------------------- 207 (259)
T PRK06688 161 LLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGPASALR--------------------------------- 207 (259)
T ss_pred HHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence 99999999999999999999999999999999999999988764332
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|+.++.....++++++..|.+.+..++.++++++++++|+++|+|++
T Consensus 208 ---~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~~~~~p~~ 256 (259)
T PRK06688 208 ---YTKRAINAATLTELEEALAREAAGFGRLLRTPDFREGATAFIEKRKPDF 256 (259)
T ss_pred ---HHHHHHHhhhhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence 3466777777788999999999999999999999999999999988764
No 56
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=6.9e-47 Score=390.87 Aligned_cols=253 Identities=25% Similarity=0.357 Sum_probs=214.2
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCCcccc
Q 004892 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSL 81 (724)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~ 81 (724)
+.+.++..+++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++...........
T Consensus 2 ~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 81 (259)
T TIGR01929 2 TDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGV 81 (259)
T ss_pred ceEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhH
Confidence 457777635789999999996 6999999999999999999999999999999999 79999999998743211110000
Q ss_pred cchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHH
Q 004892 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (724)
Q Consensus 82 ~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~ 161 (724)
.......++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+|++
T Consensus 82 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~ 160 (259)
T TIGR01929 82 HRLNVLDVQ-RQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKARE 160 (259)
T ss_pred HHHHHHHHH-HHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHH
Confidence 001122344 6689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCC
Q 004892 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241 (724)
Q Consensus 162 l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (724)
|+++|++++|+||+++||||+|||++++.+++.++++++++.|+.+++
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------- 208 (259)
T TIGR01929 161 IWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREILQKSPMAIR-------------------------------- 208 (259)
T ss_pred HHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence 999999999999999999999999999999999999999999876543
Q ss_pred hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|++++..... ....+..|.+.+..++.|+|+++++++|++||+|++
T Consensus 209 ----~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~ 256 (259)
T TIGR01929 209 ----MLKAALNADCDG-QAGLQELAGNATMLFYMTEEGQEGRNAFLEKRQPDF 256 (259)
T ss_pred ----HHHHHHHhhhcc-chHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Confidence 234455443322 345566677889999999999999999999998775
No 57
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-46 Score=388.97 Aligned_cols=251 Identities=23% Similarity=0.327 Sum_probs=223.3
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccc
Q 004892 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (724)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (724)
++++.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.......+...
T Consensus 1 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 79 (255)
T PRK07260 1 FEHIIYEV-EDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQS 79 (255)
T ss_pred CCceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhh
Confidence 35688888 7899999999996 799999999999999999999999999999999999999999999864222111111
Q ss_pred ---cchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHH
Q 004892 82 ---MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (724)
Q Consensus 82 ---~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~ 158 (724)
+.....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus 80 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~ 158 (255)
T PRK07260 80 LVKIAELVNEIS-FAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNR 158 (255)
T ss_pred HHHHHHHHHHHH-HHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHH
Confidence 122334455 6689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004892 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (724)
Q Consensus 159 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (724)
+++|+++|++++|+||+++||||+++|++++.+.+.++++++++.++.+++
T Consensus 159 a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------- 209 (255)
T PRK07260 159 ATHLAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGSSNSYA----------------------------- 209 (255)
T ss_pred HHHHHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998875443
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Q 004892 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA 291 (724)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~ 291 (724)
.+|+.++.....++++.+..|...+..++.|+++++++++|++||+
T Consensus 210 -------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~ 255 (255)
T PRK07260 210 -------AIKSLVWESFFKGWEDYAKLELALQESLAFKEDFKEGVRAFSERRR 255 (255)
T ss_pred -------HHHHHHHHHhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence 4567777777788999999999999999999999999999999875
No 58
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=8.4e-47 Score=393.01 Aligned_cols=256 Identities=19% Similarity=0.254 Sum_probs=223.5
Q ss_pred CcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC--CCccCCCCchhhhhccCCCc-cc
Q 004892 4 PRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG--GRFSGGFDINVFQKVHGAGD-VS 80 (724)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g--~~F~aG~Dl~~~~~~~~~~~-~~ 80 (724)
+.|.++..+++|++||||||+.|++|.+|+++|.+++++++.|+++|+|||||.| ++||+|+|++++.......+ ..
T Consensus 11 ~~i~~~~~~~~Va~itlnr~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~ 90 (278)
T PLN03214 11 PGVRVDRRPGGIAVVWLAKEPVNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYA 90 (278)
T ss_pred CceEEEEcCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHH
Confidence 4688887458899999999988999999999999999999999999999999987 68999999998753211111 11
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCc-cCCcchhhhhcccccHHHH
Q 004892 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGV-IPGFGGTQRLPRLVGLSKA 159 (724)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~-~P~~g~~~~l~r~~G~~~a 159 (724)
.+......++ ..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+ +|+++++++|++++|..++
T Consensus 91 ~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a 169 (278)
T PLN03214 91 EFWLTQTTFL-VRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVA 169 (278)
T ss_pred HHHHHHHHHH-HHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHHHH
Confidence 1111122344 6689999999999999999999999999999999999999999999999 5999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004892 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (724)
Q Consensus 160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (724)
++|+++|++++++||+++||||+|||.+++.+.+.+++.++++.++.+++
T Consensus 170 ~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------ 219 (278)
T PLN03214 170 ESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERALKLPSAARA------------------------------ 219 (278)
T ss_pred HHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHcCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875433
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004892 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (724)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~~ 296 (724)
.+|+.++.....+++++++.|.+.+..++.|+|+++++++|++|.+.+|.+
T Consensus 220 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~aflek~~~~~~~ 270 (278)
T PLN03214 220 ------ATKALLREEFSAAWEAYYEEEAKGGWKMLSEPSIIKALGGVMERLSSGKEK 270 (278)
T ss_pred ------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccc
Confidence 456677777677789999999999999999999999999999999988765
No 59
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.6e-47 Score=391.04 Aligned_cols=251 Identities=23% Similarity=0.285 Sum_probs=222.2
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCccccc
Q 004892 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (724)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (724)
+++.++. +++|++||||||+ .|++|.+|+.+|.++++.+ .|+++|+|||||.|++||+|+|++++...........+
T Consensus 6 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 83 (260)
T PRK07659 6 ESVVVKY-EGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGV 83 (260)
T ss_pred ceEEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHH
Confidence 3588888 7899999999996 7999999999999999999 58899999999999999999999988642211111222
Q ss_pred chhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHH
Q 004892 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (724)
Q Consensus 83 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l 162 (724)
.....+++ ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|
T Consensus 84 ~~~~~~~~-~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l 162 (260)
T PRK07659 84 MNTISEIV-VTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQI 162 (260)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHH
Confidence 23344555 56899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCCh
Q 004892 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (724)
Q Consensus 163 ~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (724)
+++|++++|+||+++||||+|| ++++.+++.++++++++.|+.+++
T Consensus 163 ~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~~~~~~a~~--------------------------------- 208 (260)
T PRK07659 163 IWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWLQKPLKAMI--------------------------------- 208 (260)
T ss_pred HHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence 9999999999999999999999 789999999999999998865433
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|+.++.....++++.++.|.+.+..++.|+++++++++|++||+|+.
T Consensus 209 ---~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~ 257 (260)
T PRK07659 209 ---ETKQIYCELNRSQLEQVLQLEKRAQYAMRQTADHKEGIRAFLEKRLPVF 257 (260)
T ss_pred ---HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence 4566777777788999999999999999999999999999999998764
No 60
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=1.2e-46 Score=389.35 Aligned_cols=253 Identities=21% Similarity=0.296 Sum_probs=220.5
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC--CCCccCCCCchhhhhccCCC
Q 004892 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--GGRFSGGFDINVFQKVHGAG 77 (724)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~--g~~F~aG~Dl~~~~~~~~~~ 77 (724)
||++.+.+++ +++|++||||||+ .|++|.+|+++|.++++.++.|+ +|+|||||. |++||+|+|++++......
T Consensus 1 ~~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~- 77 (261)
T PRK11423 1 MSMQYVNVVT-INKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRD- 77 (261)
T ss_pred CCccceEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhcccc-
Confidence 8999999999 7899999999995 79999999999999999999887 999999986 3799999999987532111
Q ss_pred cccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHH
Q 004892 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (724)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~ 157 (724)
...+.....+++ +.+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..
T Consensus 78 -~~~~~~~~~~l~-~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~ 155 (261)
T PRK11423 78 -PLSYDDPLRQIL-RMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFH 155 (261)
T ss_pred -HHHHHHHHHHHH-HHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHH
Confidence 111222334455 668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004892 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (724)
Q Consensus 158 ~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (724)
++++|+++|++++|+||+++||||+|||++++++.+.++++++++.++.+++
T Consensus 156 ~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~---------------------------- 207 (261)
T PRK11423 156 IVKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIA---------------------------- 207 (261)
T ss_pred HHHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999998875443
Q ss_pred CCCChhHHHHHHHHHHhhc-CCH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 238 APNMPQHQACLDVIEEGIV-HGG-YSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~-~~~-~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|+.++.... .+. ...++.|.+.+..++.|+|+++++.+|++||+|++
T Consensus 208 --------~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~~kr~p~~ 258 (261)
T PRK11423 208 --------VIKEQLRVLGEAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKRKPVF 258 (261)
T ss_pred --------HHHHHHHhhcccCCcchHHHHHHHHHHHHHhCChhHHHHHHHHhccCCCCC
Confidence 34556654332 233 57888899999999999999999999999998775
No 61
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=1.7e-46 Score=387.30 Aligned_cols=252 Identities=27% Similarity=0.315 Sum_probs=212.4
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCCccc
Q 004892 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS 80 (724)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 80 (724)
|+++.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++..... . ..
T Consensus 1 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~-~-~~ 77 (256)
T TIGR03210 1 YEDILYEK-RNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYD-G-RG 77 (256)
T ss_pred CCceEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcccc-c-hh
Confidence 46788888 7899999999995 7999999999999999999999999999999998 69999999998743111 1 11
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHH
Q 004892 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (724)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~ 160 (724)
........++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..+|+
T Consensus 78 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~ 156 (256)
T TIGR03210 78 TIGLPMEELH-SAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAR 156 (256)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHH
Confidence 1112233455 678999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred HHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004892 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (724)
Q Consensus 161 ~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (724)
+|+++|++++|+||+++||||+|+|++++.+++.++++++++.|+.+++
T Consensus 157 ~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~------------------------------- 205 (256)
T TIGR03210 157 EIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKSPTAIA------------------------------- 205 (256)
T ss_pred HHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCCHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999999875543
Q ss_pred ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004892 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (724)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~ 295 (724)
.+|++++......... ...|...+..++.|+|+++++.+|++||+|.+.
T Consensus 206 -----~~K~~l~~~~~~~~~~-~~~~~~~~~~~~~~~d~~e~~~af~~kr~p~~~ 254 (256)
T TIGR03210 206 -----IAKRSFNMDTAHQRGI-AGMGMYALKLYYDTAESREGVKAFQEKRKPEFR 254 (256)
T ss_pred -----HHHHHHHHhhcccchH-HHHHHHHHHHHccChhHHHHHHHHhccCCCCCC
Confidence 2344554433221111 123456788899999999999999999987753
No 62
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=3e-46 Score=388.83 Aligned_cols=253 Identities=26% Similarity=0.364 Sum_probs=216.2
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCCccc
Q 004892 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS 80 (724)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 80 (724)
++.+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....... ..
T Consensus 12 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~-~~ 89 (273)
T PRK07396 12 YEDILYKS-ADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVD-DD 89 (273)
T ss_pred CcceEEEe-cCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccc-hh
Confidence 45788888 7899999999996 7999999999999999999999999999999999 5999999999874321111 00
Q ss_pred ccch-hHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004892 81 LMPD-VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (724)
Q Consensus 81 ~~~~-~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a 159 (724)
.... ....++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|
T Consensus 90 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a 168 (273)
T PRK07396 90 GVPRLNVLDLQ-RLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKA 168 (273)
T ss_pred hhhhhHHHHHH-HHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHH
Confidence 0111 122344 66899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004892 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (724)
Q Consensus 160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (724)
++|+++|++++|+||+++||||+|||++++++++.++|+++++.++.+++
T Consensus 169 ~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 218 (273)
T PRK07396 169 REIWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALR------------------------------ 218 (273)
T ss_pred HHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998876543
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004892 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (724)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~ 295 (724)
.+|+.++.... ..+...+.|.+.+..++.|+|+++++.+|++||+|.+.
T Consensus 219 ------~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~~ 267 (273)
T PRK07396 219 ------CLKAALNADCD-GQAGLQELAGNATMLFYMTEEAQEGRNAFNEKRQPDFS 267 (273)
T ss_pred ------HHHHHHHhhhc-cHHHHHHHHHHHHHHHhcChhHHHHHHHHhCCCCCCCC
Confidence 33455554432 34555567888899999999999999999999988754
No 63
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.6e-46 Score=383.98 Aligned_cols=247 Identities=24% Similarity=0.389 Sum_probs=216.3
Q ss_pred CCCCcEEEEEecC---cEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCC
Q 004892 1 MAAPRVTMEVGND---GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA 76 (724)
Q Consensus 1 M~~~~v~~~~~~~---~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~ 76 (724)
|+ +.|.+++ ++ +|++||||||+ .|++|.+|+++|.++++.+++|+++|+|||||.|++||+|+|++++......
T Consensus 1 m~-~~i~~~~-~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~ 78 (251)
T PRK06023 1 MT-DHILVER-PGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMG 78 (251)
T ss_pred CC-ceEEEEe-ecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhcccc
Confidence 66 4688888 44 59999999995 7999999999999999999999999999999999999999999987542111
Q ss_pred CcccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccH
Q 004892 77 GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156 (724)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~ 156 (724)
...+.....+++ ..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|+++++++++|.
T Consensus 79 --~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~ 155 (251)
T PRK06023 79 --GTSFGSEILDFL-IALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGH 155 (251)
T ss_pred --chhhHHHHHHHH-HHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhH
Confidence 111222334555 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHH
Q 004892 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK 236 (724)
Q Consensus 157 ~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (724)
.++++|+++|++++|+||+++||||+|||++++.+++.++++++++.|+.+++
T Consensus 156 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~--------------------------- 208 (251)
T PRK06023 156 QRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKPPQALQ--------------------------- 208 (251)
T ss_pred HHHHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999998875443
Q ss_pred hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 004892 237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ 289 (724)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~ 289 (724)
..|+.++... .++.+++..|.+.+..++.|+++++++++|++|
T Consensus 209 ---------~~K~~l~~~~-~~l~~~~~~e~~~~~~~~~~~~~~e~~~af~e~ 251 (251)
T PRK06023 209 ---------IARDLMRGPR-EDILARIDEEAKHFAARLKSAEARAAFEAFMRR 251 (251)
T ss_pred ---------HHHHHHHhch-hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence 3455565443 468888999999999999999999999999874
No 64
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.7e-46 Score=393.68 Aligned_cols=258 Identities=25% Similarity=0.346 Sum_probs=219.2
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccC-C--
Q 004892 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG-A-- 76 (724)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~-~-- 76 (724)
|+++.|.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..... .
T Consensus 1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 79 (296)
T PRK08260 1 MTYETIRYDV-ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAP 79 (296)
T ss_pred CCcceEEEee-eCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhccccccc
Confidence 7788899998 7899999999995 799999999999999999999999999999999999999999998753100 0
Q ss_pred ---------Cccc----ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCC
Q 004892 77 ---------GDVS----LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG 143 (724)
Q Consensus 77 ---------~~~~----~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~ 143 (724)
.... .+......++ ..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~ 158 (296)
T PRK08260 80 RTPVEADEEDRADPSDDGVRDGGGRVT-LRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPE 158 (296)
T ss_pred ccccccccccccchhHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCC
Confidence 0000 1111122345 6689999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHcc-CchhhhhhhccCCCCCcHH
Q 004892 144 FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSE 222 (724)
Q Consensus 144 ~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~-~~~~~~~~~~~~~~~~~~~ 222 (724)
+|++++|++++|..+|++|+++|++++|+||+++||||+|||++++.+++.++++++++. ++.+++
T Consensus 159 ~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~~a~~------------- 225 (296)
T PRK08260 159 AASSWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIADNTSPVSVA------------- 225 (296)
T ss_pred cchhhhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHHhcCChHHHH-------------
Confidence 999999999999999999999999999999999999999999999999999999999985 654332
Q ss_pred HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhc--CCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCCC
Q 004892 223 AREVLKLARLQAKKTAPNMPQHQACLDVIEEGIV--HGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPN 297 (724)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~~~ 297 (724)
.+|++++.... .... ....|...+..++.|+++++++.+|++||+|.....
T Consensus 226 -----------------------~~K~~l~~~~~~~~~~~-~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~f~~~ 278 (296)
T PRK08260 226 -----------------------LTRQMMWRMAGADHPME-AHRVDSRAIYSRGRSGDGKEGVSSFLEKRPAVFPGK 278 (296)
T ss_pred -----------------------HHHHHHHhcccCCCcHH-HHHHHHHHHHHHccChhHHHHHHHHhcCCCCCCCCC
Confidence 34556655432 2233 345688889999999999999999999999876543
No 65
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-46 Score=387.65 Aligned_cols=250 Identities=26% Similarity=0.409 Sum_probs=214.4
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCCccc
Q 004892 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS 80 (724)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 80 (724)
++.+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.| ++||+|+|++++..........
T Consensus 7 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 85 (262)
T PRK06144 7 TDELLLEV-RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAV 85 (262)
T ss_pred CCceEEEe-eCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHH
Confidence 45688888 7899999999996 6999999999999999999999999999999998 6999999999875432111111
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccc-cCccCCcchhhhhcccccHHHH
Q 004892 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT-LGVIPGFGGTQRLPRLVGLSKA 159 (724)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~-~G~~P~~g~~~~l~r~~G~~~a 159 (724)
.+......++ ..|.++||||||+|||+|+|||++|+++||||||+++++|++||++ +|++|++|++++|++++|..+|
T Consensus 86 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a 164 (262)
T PRK06144 86 AYERRIDRVL-GALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARV 164 (262)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHH
Confidence 1222234455 6689999999999999999999999999999999999999999997 9999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004892 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (724)
Q Consensus 160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (724)
++++++|++++|+||+++||||+|+|++++.+++.++++++++.|+.+++
T Consensus 165 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~------------------------------ 214 (262)
T PRK06144 165 KDMLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLAAHAPLTLR------------------------------ 214 (262)
T ss_pred HHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875443
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|+.++..... .++.+.+.+..++.|+++++++.+|++||+|.+
T Consensus 215 ------~~K~~l~~~~~~----~l~~~~~~~~~~~~~~~~~e~~~af~~kr~p~~ 259 (262)
T PRK06144 215 ------ATKEALRRLRRE----GLPDGDDLIRMCYMSEDFREGVEAFLEKRPPKW 259 (262)
T ss_pred ------HHHHHHHHhhhc----CHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCC
Confidence 234455544333 334456788899999999999999999988764
No 66
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.1e-46 Score=383.65 Aligned_cols=248 Identities=28% Similarity=0.335 Sum_probs=216.0
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcc
Q 004892 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (724)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (724)
|+ +.+.+++ +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++..... ...
T Consensus 1 ~~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~-~~~ 77 (254)
T PRK08259 1 MS-MSVRVER-NGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRG-NRL 77 (254)
T ss_pred CC-ceEEEEE-ECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccc-hhh
Confidence 55 4588888 7899999999996 699999999999999999999999999999999999999999998754211 111
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004892 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (724)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a 159 (724)
... .....+ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..++
T Consensus 78 ~~~--~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a 154 (254)
T PRK08259 78 HPS--GDGPMG-PSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRA 154 (254)
T ss_pred hhh--hcchhh-hHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 100 011112 22347999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004892 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (724)
Q Consensus 160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (724)
++|+++|++++|+||+++||||+|||++++++++.++|+++++.|+.+++
T Consensus 155 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 204 (254)
T PRK08259 155 MDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAFPQTCLR------------------------------ 204 (254)
T ss_pred HHHHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875443
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Q 004892 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA 291 (724)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~ 291 (724)
..|++++.....+++++++.|...+..++. +|++|++.+|++|++
T Consensus 205 ------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~-~d~~egi~af~~~~~ 249 (254)
T PRK08259 205 ------ADRLSALEQWGLPEEAALANEFAHGLAVLA-AEALEGAARFAAGAG 249 (254)
T ss_pred ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhhc
Confidence 446677777777899999999998888887 999999999998766
No 67
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.8e-46 Score=387.31 Aligned_cols=251 Identities=25% Similarity=0.287 Sum_probs=211.1
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCc-cc
Q 004892 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VS 80 (724)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~-~~ 80 (724)
|+.+.++..+++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++........ ..
T Consensus 10 ~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 89 (268)
T PRK07327 10 YPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRA 89 (268)
T ss_pred CCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHH
Confidence 5678888744789999999996 699999999999999999999999999999999999999999998754221111 11
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHH
Q 004892 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (724)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~ 160 (724)
........++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|+
T Consensus 90 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 168 (268)
T PRK07327 90 RVWREARDLV-YNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAK 168 (268)
T ss_pred HHHHHHHHHH-HHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHHHH
Confidence 1122233455 668999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004892 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (724)
Q Consensus 161 ~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (724)
+|++||++++|+||+++||||+|+|++++++++.++++++++.|+.+++
T Consensus 169 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------- 217 (268)
T PRK07327 169 YYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAGSQTAIR------------------------------- 217 (268)
T ss_pred HHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCCHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999998875543
Q ss_pred ChhHHHHHHHHHHh---hcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 241 MPQHQACLDVIEEG---IVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 241 ~~a~~~~~~~~~~~---~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|++++.. ...+++..+..|. .++.|+++++++.+|++||+|.+
T Consensus 218 -----~~K~~l~~~~~~~~~~~~~~~~~~~----~~~~~~d~~eg~~af~ekr~p~~ 265 (268)
T PRK07327 218 -----WTKYALNNWLRMAGPTFDTSLALEF----MGFSGPDVREGLASLREKRAPDF 265 (268)
T ss_pred -----HHHHHHHHhhhhhhhhHHHHHHHHH----HHccChhHHHHHHHHHhcCCCCC
Confidence 223344432 1123445454443 47789999999999999998774
No 68
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.2e-46 Score=381.79 Aligned_cols=250 Identities=28% Similarity=0.406 Sum_probs=223.2
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcc
Q 004892 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (724)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (724)
|+++.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++....... .
T Consensus 1 ~~~~~v~~~~-~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~-~ 78 (258)
T PRK06190 1 MTEPILLVET-HDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAY-G 78 (258)
T ss_pred CCCceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchh-h
Confidence 8999999999 8899999999995 79999999999999999999999999999999999999999999886421111 1
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004892 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (724)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a 159 (724)
. .....+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|
T Consensus 79 -~-~~~~~~~~-~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 155 (258)
T PRK06190 79 -A-QDALPNPS-PAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRA 155 (258)
T ss_pred -H-HHHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHH
Confidence 1 12234555 67999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004892 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (724)
Q Consensus 160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (724)
++|+++|++++|+||+++||||+++|++++++++.++++++++.|+.+++
T Consensus 156 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 205 (258)
T PRK06190 156 RRMSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNNPAAVR------------------------------ 205 (258)
T ss_pred HHHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998876543
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhhh
Q 004892 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVML---DTSRGLVHVFFAQRA 291 (724)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s---~~~~~~~~af~~~r~ 291 (724)
.+|+.++.....+++++++.|...+..++.| +..++...+|..+-+
T Consensus 206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 254 (258)
T PRK06190 206 ------ALKASYDDGAAAQTGDALALEAEAARAHNRSVSPDGIAARREAVMARGR 254 (258)
T ss_pred ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhh
Confidence 4567788777888999999999999999999 777777777776544
No 69
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.2e-46 Score=383.89 Aligned_cols=247 Identities=27% Similarity=0.311 Sum_probs=218.3
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcc
Q 004892 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (724)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (724)
|+ +.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++....... .
T Consensus 1 m~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~ 77 (249)
T PRK05870 1 MM-DPVLLDV-DDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRP-A 77 (249)
T ss_pred CC-ccEEEEc-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccc-h
Confidence 55 3478888 7899999999995 79999999999999999999999999999999999999999999986532211 1
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004892 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (724)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a 159 (724)
........+.+ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..++
T Consensus 78 ~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a 156 (249)
T PRK05870 78 EDGLRRIYDGF-LAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVA 156 (249)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHH
Confidence 11122233445 56889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004892 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (724)
Q Consensus 160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (724)
++|+++|++++|+||+++||||+|| +++.+++.++++++++.++.+++
T Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~~~a~~------------------------------ 204 (249)
T PRK05870 157 RAALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPAAAPRELVL------------------------------ 204 (249)
T ss_pred HHHHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 9999999999999999999999999 78999999999999999875443
Q ss_pred CChhHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 004892 240 NMPQHQACLDVIEEGIV-HGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ 289 (724)
Q Consensus 240 ~~~a~~~~~~~~~~~~~-~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~ 289 (724)
.+|+.++.... .+++++++.|.+.+..++.|+|+++++++|+++
T Consensus 205 ------~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~~ 249 (249)
T PRK05870 205 ------ATKASMRATASLAQHAAAVEFELGPQAASVQSPEFAARLAAAQRR 249 (249)
T ss_pred ------HHHHHHHhccccCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcC
Confidence 45677777766 789999999999999999999999999999874
No 70
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.7e-46 Score=387.62 Aligned_cols=254 Identities=25% Similarity=0.343 Sum_probs=214.7
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCC---cc
Q 004892 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG---DV 79 (724)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~---~~ 79 (724)
+.+.++..+++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++....... ..
T Consensus 9 ~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~ 88 (276)
T PRK05864 9 SLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRP 88 (276)
T ss_pred CceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccch
Confidence 457777546789999999995 79999999999999999999999999999999999999999999874321111 00
Q ss_pred c---ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccC-Ccchhhhhccccc
Q 004892 80 S---LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIP-GFGGTQRLPRLVG 155 (724)
Q Consensus 80 ~---~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P-~~g~~~~l~r~~G 155 (724)
. .......+++ ..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++| ++|++++|++++|
T Consensus 89 ~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG 167 (276)
T PRK05864 89 TYALRSMELLDDVI-LALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIG 167 (276)
T ss_pred hHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhC
Confidence 0 1112233445 568899999999999999999999999999999999999999999999997 7899999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 004892 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK 235 (724)
Q Consensus 156 ~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (724)
..+|++|+++|++++|+||+++||||+|+|++++++++.++|++|+..|+.+++
T Consensus 168 ~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~-------------------------- 221 (276)
T PRK05864 168 SSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFSRPGIE-------------------------- 221 (276)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHH--------------------------
Confidence 999999999999999999999999999999999999999999999998875433
Q ss_pred HhCCCChhHHHHHHHHHHhhcC-CHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHhhhhcC
Q 004892 236 KTAPNMPQHQACLDVIEEGIVH-GGYSGVLKEAKVFK-ELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~l~~E~~~~~-~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|++++..... ++++++..|..... ..+.|+|+++++.+|++||+|..
T Consensus 222 ----------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~~kr~p~~ 272 (276)
T PRK05864 222 ----------LTKRTLWSGLDAASLEAHMQAEGLGQLFVRLLTANFEEAVAARAEKRPPVF 272 (276)
T ss_pred ----------HHHHHHHhhcccCCHHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCC
Confidence 345666665554 67888887765322 35789999999999999998764
No 71
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=1.3e-45 Score=379.08 Aligned_cols=244 Identities=26% Similarity=0.366 Sum_probs=209.4
Q ss_pred EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchh
Q 004892 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (724)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (724)
|.+++ +++|++||||||+.|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++... ........
T Consensus 3 v~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~----~~~~~~~~ 77 (251)
T TIGR03189 3 VWLER-DGKLLRLRLARPKANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPD----QCAAMLAS 77 (251)
T ss_pred EEEEe-eCCEEEEEeCCCCcCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCch----hHHHHHHH
Confidence 67788 78999999999988999999999999999999999999999999999999999999975321 11111222
Q ss_pred HHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHc
Q 004892 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL 165 (724)
Q Consensus 86 ~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~lt 165 (724)
..+++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++++|++++|..++++|+++
T Consensus 78 ~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~-~~~~~l~~~vg~~~a~~l~lt 155 (251)
T TIGR03189 78 LHKLV-IAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAP-AASCLLPERMGRVAAEDLLYS 155 (251)
T ss_pred HHHHH-HHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCC-chHHHHHHHhCHHHHHHHHHc
Confidence 33455 6689999999999999999999999999999999999999999999999997 457899999999999999999
Q ss_pred CCCCCHHHHHHCCCcceecCcchHHHHHHHH-HHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhH
Q 004892 166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLW-ALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (724)
Q Consensus 166 g~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~-a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (724)
|++++|+||+++||||+|+|+.+ +++.++ ++++++.|+.+++
T Consensus 156 g~~~~a~eA~~~Glv~~v~~~~~--~~a~~~~a~~la~~~p~a~~----------------------------------- 198 (251)
T TIGR03189 156 GRSIDGAEGARIGLANAVAEDPE--NAALAWFDEHPAKLSASSLR----------------------------------- 198 (251)
T ss_pred CCCCCHHHHHHCCCcceecCcHH--HHHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence 99999999999999999997544 466665 6889988875443
Q ss_pred HHHHHHHHHhhcCCHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 245 QACLDVIEEGIVHGGYSGV-LKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l-~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
..|++++.....++++++ ..|...+..++.|+|+++++++|++||++.+
T Consensus 199 -~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~ 248 (251)
T TIGR03189 199 -FAVRAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLEKRPALW 248 (251)
T ss_pred -HHHHHHHhhhcccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcCCCCC
Confidence 345667666667777776 4788889999999999999999999998875
No 72
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-45 Score=386.17 Aligned_cols=253 Identities=22% Similarity=0.216 Sum_probs=214.4
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchh-hhhc---c-
Q 004892 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINV-FQKV---H- 74 (724)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~-~~~~---~- 74 (724)
|+++.+.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|+++ +... .
T Consensus 2 ~~~~~v~~~~-~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~ 80 (298)
T PRK12478 2 PDFQTLLYTT-AGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMM 80 (298)
T ss_pred CCceEEEEec-cCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcc
Confidence 7788889988 8899999999995 799999999999999999999999999999999999999999986 3210 0
Q ss_pred CCC--c-cccc---c-h--hHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCccccc-CccCCc
Q 004892 75 GAG--D-VSLM---P-D--VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL-GVIPGF 144 (724)
Q Consensus 75 ~~~--~-~~~~---~-~--~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~-G~~P~~ 144 (724)
... . ...+ . . .....+ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++ |++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~-- 157 (298)
T PRK12478 81 TDGRWDPGKDFAMVTARETGPTQKF-MAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL-- 157 (298)
T ss_pred cccccCchhhhhhhhhhhcchHHHH-HHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--
Confidence 000 0 0111 0 0 011234 45889999999999999999999999999999999999999999997 9876
Q ss_pred chhhhhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHH
Q 004892 145 GGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAR 224 (724)
Q Consensus 145 g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~ 224 (724)
++++ .+++|..+|++|++||++++|+||+++||||+|||++++++++.+++++|++.|+.+++
T Consensus 158 ~~~~--~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~--------------- 220 (298)
T PRK12478 158 TGMW--LYRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARIPLSQLQ--------------- 220 (298)
T ss_pred hhHH--HHHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH---------------
Confidence 3333 35699999999999999999999999999999999999999999999999998876543
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhCCHHHH--------HHHHHHHHhhhhcCC
Q 004892 225 EVLKLARLQAKKTAPNMPQHQACLDVIEEGIV-HGGYSGVLKEAKVFKELVMLDTSR--------GLVHVFFAQRATSKV 295 (724)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~l~~E~~~~~~~~~s~~~~--------~~~~af~~~r~~~~~ 295 (724)
..|++++.... .+++++++.|...+..++.|+|++ |++.+|++||+|...
T Consensus 221 ---------------------~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~ekR~p~f~ 279 (298)
T PRK12478 221 ---------------------AQKLIVNQAYENMGLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAVERRDGPFG 279 (298)
T ss_pred ---------------------HHHHHHHHHHHhcchhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 34667776655 468999999999999999999998 599999999998754
No 73
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=1.5e-45 Score=381.19 Aligned_cols=252 Identities=37% Similarity=0.577 Sum_probs=218.2
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCccc
Q 004892 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (724)
Q Consensus 2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (724)
.++.+.++. .++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..........
T Consensus 3 ~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~ 81 (257)
T COG1024 3 TYETILVER-EDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAE 81 (257)
T ss_pred CCCeeEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHH
Confidence 456788888 6779999999996 69999999999999999999999999999999999999999999987511111111
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHH
Q 004892 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (724)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~ 160 (724)
......+.++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+++
T Consensus 82 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~ 160 (257)
T COG1024 82 NLMQPGQDLL-RALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAK 160 (257)
T ss_pred HHHhHHHHHH-HHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHH
Confidence 2223333456 679999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HHHHcCCCCCHHHHHHCCCcceecCc-chHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004892 161 EMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (724)
Q Consensus 161 ~l~ltg~~i~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (724)
+|++||+.++++||+++||||+++++ +++++.+.+++++++. ++.+++
T Consensus 161 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~-~~~a~~------------------------------ 209 (257)
T COG1024 161 ELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA-PPLALA------------------------------ 209 (257)
T ss_pred HHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc-CHHHHH------------------------------
Confidence 99999999999999999999999985 7999999999999987 443222
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhc
Q 004892 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 293 (724)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~ 293 (724)
.+|..++.+...++++.+..|...+...+.++|++|++++|++ |++.
T Consensus 210 ------~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~~-r~p~ 256 (257)
T COG1024 210 ------ATKRLVRAALEADLAEALEAEALAFARLFSSEDFREGVRAFLE-RKPV 256 (257)
T ss_pred ------HHHHHHHHhhhccHHHHHHHHHHHHHHHhcChhHHHHHHHHHc-cCCC
Confidence 3456667776666889999999999999999999999999999 6553
No 74
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-45 Score=381.92 Aligned_cols=251 Identities=27% Similarity=0.430 Sum_probs=219.2
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccc
Q 004892 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (724)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (724)
++.+.+++ +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++....... ...
T Consensus 2 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~~~ 79 (262)
T PRK07509 2 MDRVSVTI-EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNA-VKL 79 (262)
T ss_pred CceEEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchh-hhh
Confidence 35788998 8899999999995 79999999999999999999999999999999999999999999876422111 111
Q ss_pred cc-------hhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccc
Q 004892 82 MP-------DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV 154 (724)
Q Consensus 82 ~~-------~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~ 154 (724)
.. ....+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++
T Consensus 80 ~~~~~~~~~~~~~~~~-~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~ 158 (262)
T PRK07509 80 LFKRLPGNANLAQRVS-LGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLV 158 (262)
T ss_pred HhhhhHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHh
Confidence 11 1122333 557899999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHH
Q 004892 155 GLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA 234 (724)
Q Consensus 155 G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (724)
|..++++|+++|++++|+||+++||||+|++ ++.+++.++++++++.++..++
T Consensus 159 g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~--~~~~~a~~~a~~l~~~~~~~~~------------------------- 211 (262)
T PRK07509 159 RKDVARELTYTARVFSAEEALELGLVTHVSD--DPLAAALALAREIAQRSPDAIA------------------------- 211 (262)
T ss_pred CHHHHHHHHHcCCCcCHHHHHHcCChhhhhc--hHHHHHHHHHHHHHhCCHHHHH-------------------------
Confidence 9999999999999999999999999999995 3688999999999998875433
Q ss_pred HHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 235 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|+.++.....++++++..|.+.+..++.++|+++++.+|++||+|..
T Consensus 212 -----------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~ 260 (262)
T PRK07509 212 -----------AAKRLINRSWTASVRALLARESVEQIRLLLGKNQKIAVKAQMKKRAPKF 260 (262)
T ss_pred -----------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 4466777777778899999999999999999999999999999988754
No 75
>PLN02921 naphthoate synthase
Probab=100.00 E-value=2.6e-45 Score=387.61 Aligned_cols=254 Identities=27% Similarity=0.309 Sum_probs=214.2
Q ss_pred CCcEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCCcc
Q 004892 3 APRVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDV 79 (724)
Q Consensus 3 ~~~v~~~~~-~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~ 79 (724)
++.|.++.+ +++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++....... .
T Consensus 64 ~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~-~ 142 (327)
T PLN02921 64 FTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVG-P 142 (327)
T ss_pred CceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccc-h
Confidence 456778773 5889999999996 7999999999999999999999999999999999 7999999999875321110 0
Q ss_pred cccch-hHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHH
Q 004892 80 SLMPD-VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (724)
Q Consensus 80 ~~~~~-~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~ 158 (724)
..... ...+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus 143 ~~~~~~~~~~l~-~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~ 221 (327)
T PLN02921 143 DDAGRLNVLDLQ-IQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKK 221 (327)
T ss_pred hHHHHHHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence 01111 112334 5688999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004892 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (724)
Q Consensus 159 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (724)
|++|+++|++++|+||+++||||+|||++++++++.+++++|++.++.+++
T Consensus 222 A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~al~----------------------------- 272 (327)
T PLN02921 222 AREMWFLARFYTASEALKMGLVNTVVPLDELEGETVKWCREILRNSPTAIR----------------------------- 272 (327)
T ss_pred HHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHHHHHHHccCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999876544
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004892 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (724)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~ 295 (724)
.+|++++..... .......|...+..++.|+|++|++.+|++||+|...
T Consensus 273 -------~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~f~ 321 (327)
T PLN02921 273 -------VLKSALNAADDG-HAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPDFS 321 (327)
T ss_pred -------HHHHHHHHhhcc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCC
Confidence 344555554332 3333444557888999999999999999999998753
No 76
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.5e-44 Score=385.18 Aligned_cols=276 Identities=31% Similarity=0.527 Sum_probs=246.3
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc-Cc
Q 004892 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EF 385 (724)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 385 (724)
+++||+|||+|.||++||..|+++|++|++||++++.++++.+.+.+......+.+. ....+.+++.+++++ .+
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~ 77 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGI-----ASAGMGRIRMEAGLAAAV 77 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhccc-----HHHHhhceEEeCCHHHHh
Confidence 478999999999999999999999999999999999988877665443322222111 012335566677774 58
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCC
Q 004892 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS 465 (724)
Q Consensus 386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~ 465 (724)
++||+||+|||++.+.++.+++++.+.++++++|+|+||++++++++..+.++.+|+++||++|+..++++|+++++.|+
T Consensus 78 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t~ 157 (311)
T PRK06130 78 SGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTS 157 (311)
T ss_pred ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999988888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCeeEEEc-CCCchhhhhhhhHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---ccHHHHHHhhc
Q 004892 466 AQVILDLMTVGKIIKKVPVVVG-NCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQLLDLAG 539 (724)
Q Consensus 466 ~e~~~~~~~l~~~lGk~~v~v~-d~pG~i~nRl~~~~~~Ea~~l~~~G-v~~~~ID~a~-~~~g~~---~Gp~~~~D~~G 539 (724)
+++++.+.++++.+|+.+++++ +.|||++||++.++++||+.++++| +++++||.++ .++||| +|||+++|.+|
T Consensus 158 ~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~nr~~~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~~~~~~Gp~~~~D~~G 237 (311)
T PRK06130 158 PQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMNG 237 (311)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCccCCCHHHHhhhhc
Confidence 9999999999999999999995 8899999999999999999999997 5999999999 899998 69999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCCCcHHHHHHHHcCCCCcccCccceeccCC
Q 004892 540 YGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKG 587 (724)
Q Consensus 540 ld~~~~~~~~l~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~ 587 (724)
+|++.++++.+++.++++..|++++++|+++|++|+|+|+|||+|+++
T Consensus 238 l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~~~g~gfy~y~~~ 285 (311)
T PRK06130 238 LDVHLAVASYLYQDLENRTTPSPLLEEKVEAGELGAKSGQGFYAWPPE 285 (311)
T ss_pred cchHHHHHHHHHHhcCCcCCCCHHHHHHHHcCCccccCCCcCccCCCC
Confidence 999999999999999877668999999999999999999999999754
No 77
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.7e-45 Score=374.76 Aligned_cols=243 Identities=19% Similarity=0.252 Sum_probs=214.0
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccch
Q 004892 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84 (724)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (724)
|.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.... ...+..
T Consensus 2 i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~----~~~~~~ 76 (248)
T PRK06072 2 IKVES-REGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDF----AIDLRE 76 (248)
T ss_pred eEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhh----HHHHHH
Confidence 56777 7899999999995 79999999999999999999999999999999999999999999875321 111222
Q ss_pred hHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHH
Q 004892 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML 164 (724)
Q Consensus 85 ~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~l 164 (724)
....++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|. +++++++
T Consensus 77 ~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~lll 154 (248)
T PRK06072 77 TFYPII-REIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEILV 154 (248)
T ss_pred HHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHHH
Confidence 233455 66899999999999999999999999999999999999999999999999999999999999996 8999999
Q ss_pred cCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhH
Q 004892 165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (724)
Q Consensus 165 tg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (724)
+|++++|+||+++||||.+ +++++++.++|+++++.|+.+++
T Consensus 155 ~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~~~~a~~----------------------------------- 196 (248)
T PRK06072 155 LGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRISNGPFQSYI----------------------------------- 196 (248)
T ss_pred hCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence 9999999999999999953 46789999999999998865433
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|+.++.....++++.++.|.+.+..++.|+|+++++.+|++||+|++
T Consensus 197 -~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 245 (248)
T PRK06072 197 -AAKRMINLVLYNDLEEFLEYESAIQGYLGKTEDFKEGISSFKEKREPKF 245 (248)
T ss_pred -HHHHHHHHHhhcCHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCCC
Confidence 3466777766778899999999999999999999999999999998774
No 78
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=1.6e-45 Score=379.04 Aligned_cols=243 Identities=35% Similarity=0.559 Sum_probs=221.3
Q ss_pred EEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhH
Q 004892 8 MEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVS 86 (724)
Q Consensus 8 ~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 86 (724)
+++ +++|++|+|||| +.|++|.+|+++|.++++.++.|+++|+||++|.+++||+|.|++++... .......+....
T Consensus 2 ~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~-~~~~~~~~~~~~ 79 (245)
T PF00378_consen 2 YEI-EDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNS-DEEEAREFFRRF 79 (245)
T ss_dssp EEE-ETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHH-HHHHHHHHHHHH
T ss_pred EEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhcc-ccccccccchhh
Confidence 677 899999999999 68999999999999999999999999999999999999999999998775 222233444556
Q ss_pred HHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcC
Q 004892 87 VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLS 166 (724)
Q Consensus 87 ~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg 166 (724)
..++ .++..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++|..++++++++|
T Consensus 80 ~~l~-~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~g 158 (245)
T PF00378_consen 80 QELL-SRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLTG 158 (245)
T ss_dssp HHHH-HHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccc-ccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeeccccccccccc
Confidence 6666 779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhHHH
Q 004892 167 KSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQA 246 (724)
Q Consensus 167 ~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 246 (724)
++++|+||+++||||+|+|++++.+.+.+++++++..++.+++ .
T Consensus 159 ~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------------~ 202 (245)
T PF00378_consen 159 EPISAEEALELGLVDEVVPDEELDEEALELAKRLAAKPPSALR------------------------------------A 202 (245)
T ss_dssp CEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSCHHHHH------------------------------------H
T ss_pred ccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCCHHHHH------------------------------------H
Confidence 9999999999999999999999999999999999999875443 4
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 004892 247 CLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ 289 (724)
Q Consensus 247 ~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~ 289 (724)
+|+.++......+.+.++.|.+.+..++.++|+++++++|+||
T Consensus 203 ~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~eK 245 (245)
T PF00378_consen 203 TKKALNRALEQSLEEALEFEQDLFAECFKSEDFQEGIAAFLEK 245 (245)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCc
Confidence 5677777777888999999999999999999999999999986
No 79
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.1e-44 Score=372.27 Aligned_cols=245 Identities=21% Similarity=0.284 Sum_probs=220.2
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcc
Q 004892 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (724)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (724)
|.++.+.++. +++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.......
T Consensus 2 ~~~~~~~~~~-~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-- 78 (249)
T PRK07110 2 MMKVVELREV-EEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGK-- 78 (249)
T ss_pred CCCceEEEEe-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchh--
Confidence 6788888888 8899999999995 79999999999999999999999999999999999999999999876432211
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004892 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (724)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a 159 (724)
..+. . ..++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|
T Consensus 79 ~~~~-~-~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a 155 (249)
T PRK07110 79 GTFT-E-ANLY-SLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALG 155 (249)
T ss_pred hhHh-h-HHHH-HHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHH
Confidence 1111 1 3455 67899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004892 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (724)
Q Consensus 160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (724)
++|+++|++++++||+++||||+|+|++++.+++.++++++++.|+.+++
T Consensus 156 ~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 205 (249)
T PRK07110 156 QEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEKPRHSLV------------------------------ 205 (249)
T ss_pred HHHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875443
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004892 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF 287 (724)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~ 287 (724)
.+|+.++.....+++++++.|...+..++.|+|++|+++...
T Consensus 206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~~~~ 247 (249)
T PRK07110 206 ------LLKDHLVADRRRRLPEVIEQEVAMHEKTFHQPEVKRRIESLY 247 (249)
T ss_pred ------HHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHhHHHHHHHhc
Confidence 457778887788899999999999999999999999998653
No 80
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.6e-45 Score=371.79 Aligned_cols=238 Identities=25% Similarity=0.382 Sum_probs=208.2
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccch
Q 004892 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84 (724)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (724)
+.+++ +++|++||||||+ .|++|.+|+.+|.+++++++.+ ++|+|||||.|++||+|+|+++... ...+..
T Consensus 2 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~------~~~~~~ 73 (243)
T PRK07854 2 IGVTR-DGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY------ADDFPD 73 (243)
T ss_pred ceEEE-eCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh------HHHHHH
Confidence 56777 7899999999995 7999999999999999999865 9999999999999999999985311 111222
Q ss_pred hHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHH
Q 004892 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML 164 (724)
Q Consensus 85 ~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~l 164 (724)
...+++ +.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|++
T Consensus 74 ~~~~~~-~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l 152 (243)
T PRK07854 74 ALIEML-HAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLL 152 (243)
T ss_pred HHHHHH-HHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHH
Confidence 334455 6689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhH
Q 004892 165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (724)
Q Consensus 165 tg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (724)
+|++++|+||+++||||+|++ +. ++.++++++++.|+.+++
T Consensus 153 tg~~~~a~eA~~~Glv~~v~~---~~-~a~~~a~~l~~~~~~a~~----------------------------------- 193 (243)
T PRK07854 153 GAEKLTAEQALATGMANRIGT---LA-DAQAWAAEIAGLAPLALQ----------------------------------- 193 (243)
T ss_pred cCCCcCHHHHHHCCCcccccC---HH-HHHHHHHHHHhCCHHHHH-----------------------------------
Confidence 999999999999999999975 22 789999999998875433
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|+.++.. .+++++++.|...+..++.|+|+++++++|++||+|.+
T Consensus 194 -~~K~~l~~~--~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 240 (243)
T PRK07854 194 -HAKRVLNDD--GAIEEAWPAHKELFDKAWASQDAIEAQVARIEKRPPKF 240 (243)
T ss_pred -HHHHHHHcc--CCHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCCCCCC
Confidence 345666654 56889999999999999999999999999999988764
No 81
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.3e-44 Score=373.12 Aligned_cols=250 Identities=18% Similarity=0.211 Sum_probs=213.0
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcc
Q 004892 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (724)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (724)
|+|+.+.++. +++|++||||||+ .|++|.+|+++|.++++.++ +++|+|||||.|++||+|+|++++.........
T Consensus 1 ~~~~~i~~~~-~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~ 77 (255)
T PRK07112 1 MDYQTIRVRQ-QGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRA 77 (255)
T ss_pred CCCceEEEEe-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccchh
Confidence 7889999999 8899999999995 79999999999999999998 369999999999999999999988642211111
Q ss_pred c-ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHH
Q 004892 80 S-LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (724)
Q Consensus 80 ~-~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~ 158 (724)
. .......+++ +.|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ +.+|++++|..+
T Consensus 78 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~ 155 (255)
T PRK07112 78 DLIDAEPLYDLW-HRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQK 155 (255)
T ss_pred hhhhHHHHHHHH-HHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHH
Confidence 1 1112233455 678999999999999999999999999999999999999999999999999865 567999999999
Q ss_pred HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004892 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (724)
Q Consensus 159 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (724)
+++|+++|++++|+||+++||||+|||+++. .+.++++++++.++.+++
T Consensus 156 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~~~a~~l~~~~p~a~~----------------------------- 204 (255)
T PRK07112 156 AHYMTLMTQPVTAQQAFSWGLVDAYGANSDT--LLRKHLLRLRCLNKAAVA----------------------------- 204 (255)
T ss_pred HHHHHHhCCcccHHHHHHcCCCceecCcHHH--HHHHHHHHHHhCCHHHHH-----------------------------
Confidence 9999999999999999999999999987663 578889999988875443
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|+.++.. ...+.++++.|.+.+..++.|+|+++++.+|++||+|..
T Consensus 205 -------~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~ 252 (255)
T PRK07112 205 -------RYKSYASTL-DDTVAAARPAALAANIEMFADPENLRKIARYVETGKFPW 252 (255)
T ss_pred -------HHHHHHHHh-hhhHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCCCC
Confidence 334555543 345788999999999999999999999999999988764
No 82
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-44 Score=375.07 Aligned_cols=250 Identities=25% Similarity=0.346 Sum_probs=217.3
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhcc-CCCc-cc
Q 004892 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH-GAGD-VS 80 (724)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~-~~~~-~~ 80 (724)
+.+.++. +++|++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.... ...+ ..
T Consensus 6 ~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 84 (260)
T PRK07827 6 TLVRYAV-DGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAV 84 (260)
T ss_pred cceEEEe-eCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHH
Confidence 4577887 7899999999995 79999999999999999999999999999999999999999999875421 1111 11
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHH
Q 004892 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (724)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~ 160 (724)
.+.....+++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++| .+++
T Consensus 85 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~~-~~a~ 162 (260)
T PRK07827 85 ARAREMTALL-RAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSP-RAAA 162 (260)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhhH-HHHH
Confidence 1222334455 6789999999999999999999999999999999999999999999999999999999998754 6899
Q ss_pred HHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004892 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (724)
Q Consensus 161 ~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (724)
+|+++|++++|+||+++||||++++ ++.+++.++++++++.++.+++
T Consensus 163 ~l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la~~~~~a~~------------------------------- 209 (260)
T PRK07827 163 RYYLTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLRRGSPQGLA------------------------------- 209 (260)
T ss_pred HHHHhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHHhCCHHHHH-------------------------------
Confidence 9999999999999999999999974 5999999999999998865433
Q ss_pred ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+|+.++......+++.++.|...+..++.|+++++++++|++||+|+.
T Consensus 210 -----~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~kr~p~~ 258 (260)
T PRK07827 210 -----ESKALTTAAVLAGFDRDAEELTEESARLFVSDEAREGMTAFLQKRPPRW 258 (260)
T ss_pred -----HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 4567777777778899999999999999999999999999999987653
No 83
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=8.9e-45 Score=387.73 Aligned_cols=286 Identities=23% Similarity=0.338 Sum_probs=219.8
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCCccc-
Q 004892 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS- 80 (724)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~- 80 (724)
+.+.+++ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..........
T Consensus 3 ~~v~~~~-~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 81 (342)
T PRK05617 3 DEVLAEV-EGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLA 81 (342)
T ss_pred ceEEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchh
Confidence 4688888 7899999999995 7999999999999999999999999999999999 8999999999875422111110
Q ss_pred --ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHH
Q 004892 81 --LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (724)
Q Consensus 81 --~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~ 158 (724)
.+.....+++ ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .+
T Consensus 82 ~~~~~~~~~~~~-~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~ 159 (342)
T PRK05617 82 ADRFFREEYRLN-ALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-AL 159 (342)
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-HH
Confidence 1112223444 6689999999999999999999999999999999999999999999999999999999999977 78
Q ss_pred HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHH------------HHHccC---c--------hhhhhhhccC
Q 004892 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWAL------------DIAARR---K--------PWIRSLHRTD 215 (724)
Q Consensus 159 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~------------~la~~~---~--------~~~~~~~~~~ 215 (724)
|++|++||++++|+||+++||||+|+|++++.+...+++. .+...+ + ..+.+....
T Consensus 160 a~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 238 (342)
T PRK05617 160 GTYLALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAG- 238 (342)
T ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCC-
Confidence 9999999999999999999999999999998776443331 111100 0 001111100
Q ss_pred CCCCcHHHHHHHH-----HHHHHHHHhC-CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-H
Q 004892 216 KLGSLSEAREVLK-----LARLQAKKTA-PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF-A 288 (724)
Q Consensus 216 ~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~-~ 288 (724)
.+.....+.++ .+....++.. ..-.+...+|++++.....+++++++.|...+..++.|+|+++++++|+ +
T Consensus 239 --~~~~~~~~~l~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~e 316 (342)
T PRK05617 239 --DTVEDIIAALEADGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSPDFVEGVRAVLID 316 (342)
T ss_pred --CCHHHHHHHHHhccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCchhhccceEEEc
Confidence 11111111111 1222222222 2334667789999988888999999999999999999999999999997 7
Q ss_pred h-hhhcCC
Q 004892 289 Q-RATSKV 295 (724)
Q Consensus 289 ~-r~~~~~ 295 (724)
| |+|++.
T Consensus 317 k~r~p~~~ 324 (342)
T PRK05617 317 KDRNPKWS 324 (342)
T ss_pred CCCCCCCC
Confidence 6 766653
No 84
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=6.7e-44 Score=375.62 Aligned_cols=253 Identities=24% Similarity=0.302 Sum_probs=211.5
Q ss_pred cEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-------CCccCCCCchhhhhcc-
Q 004892 5 RVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-------GRFSGGFDINVFQKVH- 74 (724)
Q Consensus 5 ~v~~~~~-~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-------~~F~aG~Dl~~~~~~~- 74 (724)
++.++.+ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....
T Consensus 24 ~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~ 103 (302)
T PRK08321 24 DITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGY 103 (302)
T ss_pred eEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccc
Confidence 4666653 5789999999996 6999999999999999999999999999999998 5899999999763210
Q ss_pred ---CCC--cc-c--ccchh-HHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEe-CCceeeCcccccCccCCc
Q 004892 75 ---GAG--DV-S--LMPDV-SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVIPGF 144 (724)
Q Consensus 75 ---~~~--~~-~--~~~~~-~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~G~~P~~ 144 (724)
... .. . ..... ..+++ +.+..+||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~ 182 (302)
T PRK08321 104 QYAEGDEADTVDPARAGRLHILEVQ-RLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGG 182 (302)
T ss_pred cccccccccchhhhHHHHHHHHHHH-HHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCc
Confidence 000 00 0 00011 11233 56889999999999999999999999999999999 699999999999999999
Q ss_pred chhhhhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHH
Q 004892 145 GGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAR 224 (724)
Q Consensus 145 g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~ 224 (724)
+++++|+|++|..+|++|++||++++|+||+++||||+|||++++++++.+++++|++.++.+++
T Consensus 183 ~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------- 247 (302)
T PRK08321 183 YGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAMR--------------- 247 (302)
T ss_pred hHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCCHHHHH---------------
Confidence 99999999999999999999999999999999999999999999999999999999998876543
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004892 225 EVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (724)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~ 295 (724)
.+|++++..... .......|.+.+..++.++++++++.+|++||+|.+.
T Consensus 248 ---------------------~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr~p~~~ 296 (302)
T PRK08321 248 ---------------------MLKYAFNLTDDG-LVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPDWS 296 (302)
T ss_pred ---------------------HHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCC
Confidence 345555554332 3444556888999999999999999999999988753
No 85
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=6.3e-44 Score=385.52 Aligned_cols=290 Identities=23% Similarity=0.264 Sum_probs=217.3
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCc-cc
Q 004892 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VS 80 (724)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~-~~ 80 (724)
++.+.++. +++|++||||||+ +|++|.+|+.+|.++++.++.|++||+|||||.|++||+|+|++++........ ..
T Consensus 10 ~~~v~~~~-~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~ 88 (379)
T PLN02874 10 EEVVLGEE-KGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCL 88 (379)
T ss_pred CCceEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHH
Confidence 35688888 7899999999996 699999999999999999999999999999999999999999998854221111 11
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHH
Q 004892 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (724)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~ 160 (724)
........++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|. .++
T Consensus 89 ~~~~~~~~l~-~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~-~a~ 166 (379)
T PLN02874 89 EVVYRMYWLC-YHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGH-LGE 166 (379)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHH-HHH
Confidence 1111112233 56889999999999999999999999999999999999999999999999999999999999985 899
Q ss_pred HHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhc----------------------cCCCC
Q 004892 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHR----------------------TDKLG 218 (724)
Q Consensus 161 ~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~----------------------~~~~~ 218 (724)
+|++||++++|+||+++||||+|||++++.+.+.++. ++...+...+....+ .-...
T Consensus 167 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~-~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 245 (379)
T PLN02874 167 YLALTGARLNGKEMVACGLATHFVPSEKLPELEKRLL-NLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKD 245 (379)
T ss_pred HHHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCC
Confidence 9999999999999999999999999988876322221 000000000000000 00000
Q ss_pred CcHHHHHHHH---------HHHHHHHHhCCCCh-hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Q 004892 219 SLSEAREVLK---------LARLQAKKTAPNMP-QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVM---LDTSRGLVHV 285 (724)
Q Consensus 219 ~~~~~~~~~~---------~~~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~---s~~~~~~~~a 285 (724)
+.......+. .+....++....-| +...+|++++.+...+++++++.|......++. ++|++|++++
T Consensus 246 ~~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~A 325 (379)
T PLN02874 246 TVEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRA 325 (379)
T ss_pred CHHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccce
Confidence 1111111111 11223333333334 556778999998888999999999888888877 9999999999
Q ss_pred HH-Hh-hhhcCCC
Q 004892 286 FF-AQ-RATSKVP 296 (724)
Q Consensus 286 f~-~~-r~~~~~~ 296 (724)
|+ +| |+|++.+
T Consensus 326 flidK~r~P~w~~ 338 (379)
T PLN02874 326 LVIDKDNAPKWNP 338 (379)
T ss_pred EEEcCCCCCCCCC
Confidence 97 77 7777643
No 86
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=4.2e-43 Score=391.96 Aligned_cols=254 Identities=15% Similarity=0.157 Sum_probs=220.1
Q ss_pred CCcEEEEEe-cCcEEEEEeCCCC-C-------------CCCCHHHHHHHHHHHHHHhc-CCCceEEEEEcCCC-CccCCC
Q 004892 3 APRVTMEVG-NDGVAIITLINPP-V-------------NALAIPIVAGLKDKFEEATS-RDDVKAIVLTGNGG-RFSGGF 65 (724)
Q Consensus 3 ~~~v~~~~~-~~~v~~i~l~~p~-~-------------Nal~~~~~~~l~~~l~~~~~-d~~v~~vVl~g~g~-~F~aG~ 65 (724)
|.+|.++.+ +++|++||||||+ . |+||.+|+++|.++++.++. |+++|+|||||.|+ .||+|+
T Consensus 259 ~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~ 338 (550)
T PRK08184 259 YRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAA 338 (550)
T ss_pred eEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCC
Confidence 445555553 5789999999995 5 79999999999999999986 79999999999994 999999
Q ss_pred CchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEEC-ccccchh-HHHHhhcCEEEEe-------CCceeeCccc
Q 004892 66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE-GLALGGG-LELAMGCHARIAA-------PKTQLGLPEL 136 (724)
Q Consensus 66 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~-G~a~GgG-~~lalacD~ria~-------~~a~f~~pe~ 136 (724)
|++.+.. .............+.++ .+|.++||||||+|| |+|+||| ++|+|+||+|||+ ++++|++||+
T Consensus 339 Dl~~~~~-~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~ 416 (550)
T PRK08184 339 DATLLAH-KDHWLVRETRGYLRRTL-KRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSAL 416 (550)
T ss_pred Chhhhcc-cchHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccc
Confidence 9874321 11100111122333455 679999999999997 9999999 9999999999999 9999999999
Q ss_pred ccCccCCcchhhhhccc-ccHHHHHHH--HHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhc
Q 004892 137 TLGVIPGFGGTQRLPRL-VGLSKAIEM--MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHR 213 (724)
Q Consensus 137 ~~G~~P~~g~~~~l~r~-~G~~~a~~l--~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~ 213 (724)
++|++|++|++++|+|+ +|..+|++| +++|++++|+||+++||||+|||++++++++.++++++++.||.+++
T Consensus 417 ~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a~~---- 492 (550)
T PRK08184 417 NFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERASLSPDALT---- 492 (550)
T ss_pred cccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHHhCCHHHHH----
Confidence 99999999999999998 699999997 58999999999999999999999999999999999999999886544
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHHHHH---HHHHHHHh
Q 004892 214 TDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRG---LVHVFFAQ 289 (724)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-l~~E~~~~~~~~~s~~~~~---~~~af~~~ 289 (724)
.+|++++.+...+++++ +..|.+.|..+++|+|++| ++++|++|
T Consensus 493 --------------------------------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ek 540 (550)
T PRK08184 493 --------------------------------GMEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTG 540 (550)
T ss_pred --------------------------------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhccC
Confidence 45778888888999999 9999999999999999999 99999999
Q ss_pred hhhcC
Q 004892 290 RATSK 294 (724)
Q Consensus 290 r~~~~ 294 (724)
|+|+.
T Consensus 541 r~~~f 545 (550)
T PRK08184 541 QKAQF 545 (550)
T ss_pred CCCCC
Confidence 99875
No 87
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=5.5e-43 Score=389.40 Aligned_cols=254 Identities=16% Similarity=0.136 Sum_probs=219.8
Q ss_pred CCcEEEEEe-cCcEEEEEeCCCC-C-------------CCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcCCCC-ccCCC
Q 004892 3 APRVTMEVG-NDGVAIITLINPP-V-------------NALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGNGGR-FSGGF 65 (724)
Q Consensus 3 ~~~v~~~~~-~~~v~~i~l~~p~-~-------------Nal~~~~~~~l~~~l~~~~-~d~~v~~vVl~g~g~~-F~aG~ 65 (724)
|.+|.+..+ +++|++||||||+ . |+||.+|+.+|.++++.++ +|+++|+|||||.|+. ||+|+
T Consensus 255 ~~~~~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~ 334 (546)
T TIGR03222 255 YPTVDVAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAA 334 (546)
T ss_pred eeeEEEEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCc
Confidence 344444432 6789999999995 7 9999999999999999998 4599999999999987 99999
Q ss_pred CchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEE-Cccccchh-HHHHhhcCEEEE-------eCCceeeCccc
Q 004892 66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV-EGLALGGG-LELAMGCHARIA-------APKTQLGLPEL 136 (724)
Q Consensus 66 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav-~G~a~GgG-~~lalacD~ria-------~~~a~f~~pe~ 136 (724)
|++.... .............++++ .+|.++||||||+| ||+|+||| ++|+++||+||+ +++++|++||+
T Consensus 335 Dl~~~~~-~~~~~~~~~~~~~~~~~-~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~ 412 (546)
T TIGR03222 335 DALLEAH-KDHWFVRETIGYLRRTL-ARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSEL 412 (546)
T ss_pred Ccccccc-ccchhHHHHHHHHHHHH-HHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCcc
Confidence 9984321 11111111112233455 67999999999999 89999999 999999999999 89999999999
Q ss_pred ccCccCCcchhhhhcccc-cHHHH--HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhc
Q 004892 137 TLGVIPGFGGTQRLPRLV-GLSKA--IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHR 213 (724)
Q Consensus 137 ~~G~~P~~g~~~~l~r~~-G~~~a--~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~ 213 (724)
++|++|++|++++|++++ |..++ ++|++||++|+|+||+++|||++|+|++++++++.++++++++.||.+++
T Consensus 413 ~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~---- 488 (546)
T TIGR03222 413 NFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERASFSPDALT---- 488 (546)
T ss_pred ccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHHhcCHHHHH----
Confidence 999999999999999998 99999 55999999999999999999999999999999999999999999886544
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHHHHH---HHHHHHHh
Q 004892 214 TDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRG---LVHVFFAQ 289 (724)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-l~~E~~~~~~~~~s~~~~~---~~~af~~~ 289 (724)
.+|+.++.+...+++.+ +..|.+.|..++.|+|++| ++++|++|
T Consensus 489 --------------------------------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ek 536 (546)
T TIGR03222 489 --------------------------------GLEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSG 536 (546)
T ss_pred --------------------------------HHHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHccC
Confidence 45677888888899999 9999999999999999999 99999999
Q ss_pred hhhcC
Q 004892 290 RATSK 294 (724)
Q Consensus 290 r~~~~ 294 (724)
|+|+.
T Consensus 537 r~p~f 541 (546)
T TIGR03222 537 KKAQF 541 (546)
T ss_pred CCCCC
Confidence 99864
No 88
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=1.5e-43 Score=330.56 Aligned_cols=245 Identities=29% Similarity=0.470 Sum_probs=219.1
Q ss_pred cCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc-CCCCccCCCCchhhhhccCCCcccccchhHHHH
Q 004892 12 NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTG-NGGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL 89 (724)
Q Consensus 12 ~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g-~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (724)
++||.+|-+||| +.|+|+.-|+++|.++++++..|+.+|+|+|++ .++.||+|+||+|-..++.+ ++..+...+..+
T Consensus 38 ~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~-Ev~~fV~~lR~~ 116 (291)
T KOG1679|consen 38 DEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPS-EVTRFVNGLRGL 116 (291)
T ss_pred CCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHH-HHHHHHHHHHHH
Confidence 679999999999 589999999999999999999999999999965 56789999999998776433 344455555566
Q ss_pred HHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCC
Q 004892 90 VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169 (724)
Q Consensus 90 ~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i 169 (724)
+ ..|+++|.||||+|+|.|+|||+||+|+||+|+|+++++|+++|.+++++||.|||+||||++|...|+|+++|++.+
T Consensus 117 ~-~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~alaKELIftarvl 195 (291)
T KOG1679|consen 117 F-NDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVALAKELIFTARVL 195 (291)
T ss_pred H-HHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHHHHHhHhhhheec
Confidence 6 569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHCCCcceecCcc----hHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhHH
Q 004892 170 TSEEGWKLGLIDAVVTSE----ELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245 (724)
Q Consensus 170 ~a~eA~~~Glv~~vv~~~----~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 245 (724)
++.||...||||+||... ...+.+.++|+++.-+.|.+. .
T Consensus 196 ~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~gPiav------------------------------------r 239 (291)
T KOG1679|consen 196 NGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQGPIAV------------------------------------R 239 (291)
T ss_pred cchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCCchhh------------------------------------h
Confidence 999999999999999765 667778888888766555332 2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 246 ~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
..|.+|+.+.+.++..++..|..++++...+.|--|++.+|.+||+|..
T Consensus 240 ~aKlAIn~G~evdiasgl~iEe~CYaq~i~t~drLeglaaf~ekr~p~y 288 (291)
T KOG1679|consen 240 LAKLAINLGMEVDIASGLSIEEMCYAQIIPTKDRLEGLAAFKEKRKPEY 288 (291)
T ss_pred HHHHHhccCceecccccccHHHHHHHhcCcHHHHHHHHHHHHhhcCCCc
Confidence 4567899999999999999999999999999999999999999999874
No 89
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=2.6e-42 Score=371.49 Aligned_cols=243 Identities=21% Similarity=0.317 Sum_probs=204.3
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcc---
Q 004892 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV--- 79 (724)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~--- 79 (724)
+.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||+|.|++||+|+|++++.........
T Consensus 37 ~~V~~e~-~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~ 115 (401)
T PLN02157 37 YQVLVEG-SGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAI 115 (401)
T ss_pred CceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence 4578888 7899999999995 7999999999999999999999999999999999999999999988643211111
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004892 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (724)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a 159 (724)
..+......++ ..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|. .+
T Consensus 116 ~~~~~~~~~l~-~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~-~a 193 (401)
T PLN02157 116 REFFSSLYSFI-YLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGR-LG 193 (401)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhH-HH
Confidence 11111111233 56899999999999999999999999999999999999999999999999999999999999995 89
Q ss_pred HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004892 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (724)
Q Consensus 160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (724)
++|++||++++|+||+++||||++||++++ +++.+++.+++..++..++
T Consensus 194 ~~L~LTG~~i~A~eA~~~GLv~~vVp~~~l-~~~~~~~~~i~~~~p~av~------------------------------ 242 (401)
T PLN02157 194 EYLGLTGLKLSGAEMLACGLATHYIRSEEI-PVMEEQLKKLLTDDPSVVE------------------------------ 242 (401)
T ss_pred HHHHHcCCcCCHHHHHHcCCceEEeCHhHH-HHHHHHHHHHHcCCHHHHH------------------------------
Confidence 999999999999999999999999999998 6777999998876653322
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004892 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF 287 (724)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~ 287 (724)
.+|+.+... ..+....+..|...+..++.+++.++.+.+|.
T Consensus 243 ------~~k~~~~~~-~~~~~~~l~~~~~~i~~~f~~~d~~ei~~al~ 283 (401)
T PLN02157 243 ------SCLEKCAEV-AHPEKTGVIRRIDLLEKCFSHDTVEEIIDSLE 283 (401)
T ss_pred ------HHHHHHhcc-cCCcchhHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 234444433 23455677888899999999999999999993
No 90
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.8e-42 Score=348.86 Aligned_cols=205 Identities=29% Similarity=0.465 Sum_probs=182.2
Q ss_pred CCcEEEEEe----cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCc
Q 004892 3 APRVTMEVG----NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (724)
Q Consensus 3 ~~~v~~~~~----~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (724)
|+.|.++.. +++|++||||||+.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++..... .+
T Consensus 2 ~~~~~~~~~~~~~~~~i~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~-~~ 80 (222)
T PRK05869 2 NEFVNVVVSDGSQDAGLATLLLSRPPTNALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSA-QE 80 (222)
T ss_pred ccchhhhcccCcccCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccCh-hh
Confidence 456666663 4889999999998899999999999999999999999999999999999999999998754321 11
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHH
Q 004892 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (724)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~ 158 (724)
........++++ +++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus 81 ~~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~ 159 (222)
T PRK05869 81 ADTAARVRQQAV-DAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSR 159 (222)
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHH
Confidence 111222334556 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhh
Q 004892 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR 209 (724)
Q Consensus 159 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~ 209 (724)
+++++++|++++|+||+++||||+|+|++++++++.+++++++..++.+++
T Consensus 160 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~ 210 (222)
T PRK05869 160 AKELVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWARRFLDGPPHALA 210 (222)
T ss_pred HHHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999999999999999999876543
No 91
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.8e-42 Score=359.86 Aligned_cols=238 Identities=26% Similarity=0.321 Sum_probs=202.6
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCC---
Q 004892 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA--- 76 (724)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~--- 76 (724)
|+++.+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++......
T Consensus 1 ~~~~~v~~~~-~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~ 79 (288)
T PRK08290 1 MEYEYVRYEV-AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPG 79 (288)
T ss_pred CCCceEEEEe-eCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccc
Confidence 8999999998 8899999999996 6999999999999999999999999999999999999999999987421110
Q ss_pred --------------Cccc-cc---chhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCccccc
Q 004892 77 --------------GDVS-LM---PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL 138 (724)
Q Consensus 77 --------------~~~~-~~---~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~ 138 (724)
.... .+ ......++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~l 158 (288)
T PRK08290 80 PDQHPTLWWDGATKPGVEQRYAREWEVYLGMC-RRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRM 158 (288)
T ss_pred cccccccccccccccchhhHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCccccc
Confidence 0000 01 01122334 56889999999999999999999999999999999999999999999
Q ss_pred CccCCcchhhhhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCC
Q 004892 139 GVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLG 218 (724)
Q Consensus 139 G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~ 218 (724)
|+ |+ .+++++++++|+.++++|++||++++|+||+++||||+|||++++++++.++++++++.|+.+++
T Consensus 159 Gl-~~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------- 227 (288)
T PRK08290 159 GI-PG-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMPPFGLR--------- 227 (288)
T ss_pred Cc-Cc-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHH---------
Confidence 98 54 45677899999999999999999999999999999999999999999999999999999875443
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHh-CCHH
Q 004892 219 SLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVH-GGYSGVLKEAKVFKELV-MLDT 278 (724)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~l~~E~~~~~~~~-~s~~ 278 (724)
.+|+.++..... +++++++.|...+...+ .+++
T Consensus 228 ---------------------------~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (288)
T PRK08290 228 ---------------------------LTKRAVNQTLDAQGFRAALDAVFDLHQLGHAHNAE 262 (288)
T ss_pred ---------------------------HHHHHHHHHHhhccHHHHHHHHHHHHHHccccchh
Confidence 345666666554 68999999999888877 6665
No 92
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=1.4e-40 Score=357.39 Aligned_cols=291 Identities=21% Similarity=0.289 Sum_probs=224.8
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCccc
Q 004892 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (724)
Q Consensus 2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (724)
+.+.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++..........
T Consensus 7 ~~~~v~~~~-~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~ 85 (381)
T PLN02988 7 SQSQVLVEE-KSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWR 85 (381)
T ss_pred cCCceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchh
Confidence 345788887 7899999999996 69999999999999999999999999999999999999999999885321111110
Q ss_pred ---ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHH
Q 004892 81 ---LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (724)
Q Consensus 81 ---~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~ 157 (724)
.+......+. ..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|.
T Consensus 86 ~~~~~f~~~~~l~-~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~- 163 (381)
T PLN02988 86 LGANFFSDEYMLN-YVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF- 163 (381)
T ss_pred HHHHHHHHHHHHH-HHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH-
Confidence 1111111222 56889999999999999999999999999999999999999999999999999999999999996
Q ss_pred HHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhcc---CC---C--------------
Q 004892 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRT---DK---L-------------- 217 (724)
Q Consensus 158 ~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~---~~---~-------------- 217 (724)
.+++|++||++++|++|+++||+|++||++++.+.+.+++ +++..++...+..++. .. .
T Consensus 164 ~~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f 242 (381)
T PLN02988 164 FGEYVGLTGARLDGAEMLACGLATHFVPSTRLTALEADLC-RIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCF 242 (381)
T ss_pred HHHHHHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHH-HhhccCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh
Confidence 6999999999999999999999999999999999988888 6666554433322111 00 0
Q ss_pred --CCcHHHHHHHHH---------HHHHHHHhCCCChh-HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHH
Q 004892 218 --GSLSEAREVLKL---------ARLQAKKTAPNMPQ-HQACLDVIEEGIVHGGYSGVLKEAKVFKELVM---LDTSRGL 282 (724)
Q Consensus 218 --~~~~~~~~~~~~---------~~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~---s~~~~~~ 282 (724)
.++....+.+.. ++...+.....-|. ...+.+.++.+...++.+.++.|.+.-..+.. ++|+.||
T Consensus 243 ~~~~~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EG 322 (381)
T PLN02988 243 SRRTVEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEG 322 (381)
T ss_pred CCCCHHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHh
Confidence 011111111111 11112222233443 34567888889999999999999999999988 6999999
Q ss_pred HHHHHH-h-hhhcCCC
Q 004892 283 VHVFFA-Q-RATSKVP 296 (724)
Q Consensus 283 ~~af~~-~-r~~~~~~ 296 (724)
|++-+- | +.|+++|
T Consensus 323 VRA~LiDKd~~P~W~p 338 (381)
T PLN02988 323 CRAILVDKDKNPKWEP 338 (381)
T ss_pred HHHHhcCCCCCCCCCC
Confidence 999876 3 3455443
No 93
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.4e-41 Score=342.39 Aligned_cols=201 Identities=27% Similarity=0.376 Sum_probs=178.2
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCccc
Q 004892 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (724)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (724)
|+ +.+.++. +++|++||||||+.|++|.+|+++|.++++.++ +++|+||+||.|++||+|+|++++... .....
T Consensus 1 ~~-~~i~~~~-~~~v~~itln~~~~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~--~~~~~ 74 (229)
T PRK06213 1 MS-ELVSYTL-EDGVATITLDDGKVNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSG--AQAAI 74 (229)
T ss_pred Cc-ceEEEEe-cCCEEEEEeCCCCCCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcc--hHhHH
Confidence 53 4688888 789999999999899999999999999999998 467999999999999999999987542 11111
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCC-ceeeCcccccCccCCcchhhhhcccccHHHH
Q 004892 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (724)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a 159 (724)
.+.....+++ +++.++||||||+|||+|+|||++|+++||||||+++ ++|++||+++|++|+++++.++++++|...+
T Consensus 75 ~~~~~~~~l~-~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a 153 (229)
T PRK06213 75 ALLTAGSTLA-RRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAF 153 (229)
T ss_pred HHHHHHHHHH-HHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHH
Confidence 2223344556 6789999999999999999999999999999999999 9999999999999888888889999999999
Q ss_pred HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhh
Q 004892 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWI 208 (724)
Q Consensus 160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~ 208 (724)
++|+++|++++|+||+++||||+|+|++++.+++.++++++++.++.++
T Consensus 154 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~ 202 (229)
T PRK06213 154 QRAVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGLNMGAH 202 (229)
T ss_pred HHHHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcCCHHHH
Confidence 9999999999999999999999999999999999999999999887544
No 94
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.5e-40 Score=345.11 Aligned_cols=243 Identities=23% Similarity=0.265 Sum_probs=194.0
Q ss_pred EEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEEcC-CCCccCCCCchhhhhccCCCc
Q 004892 6 VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATS-----RDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGD 78 (724)
Q Consensus 6 v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~-----d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~ 78 (724)
|.++. +++|++|||| | +.|+||.+|+++|.++++++++ |+++|+|||||. |++||+|+|++++.......+
T Consensus 19 i~~e~-~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~ 96 (287)
T PRK08788 19 VYYEE-ERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGD 96 (287)
T ss_pred EEEEc-cCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccc
Confidence 34444 6889999996 6 5899999999999999999998 899999999999 789999999998753211111
Q ss_pred ccccch---hHHHHHHHHHh---cCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcc
Q 004892 79 VSLMPD---VSVELVVNLIE---DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPR 152 (724)
Q Consensus 79 ~~~~~~---~~~~~~~~~l~---~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r 152 (724)
...+.. ...+.+ ..+. .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++
T Consensus 97 ~~~~~~~~~~~~~~~-~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~ 175 (287)
T PRK08788 97 RDALLAYARACVDGV-HAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLAR 175 (287)
T ss_pred hHHHHHHHHHHHHHH-HHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHH
Confidence 111111 111222 2233 799999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHH
Q 004892 153 LVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARL 232 (724)
Q Consensus 153 ~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (724)
++|..++++|++||++++|+||+++||||+++|++++.+++.+++++++.. +....
T Consensus 176 ~vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~~-~~~~~----------------------- 231 (287)
T PRK08788 176 RVGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKRK-LNGWR----------------------- 231 (287)
T ss_pred HhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhcC-ccHHH-----------------------
Confidence 999999999999999999999999999999999999999999999999976 32211
Q ss_pred HHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHH
Q 004892 233 QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLD-TSRGLVHVFFA 288 (724)
Q Consensus 233 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~-~~~~~~~af~~ 288 (724)
.+|+..+.....++++.++.|...+..++++. ..++-+..|..
T Consensus 232 -------------a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (287)
T PRK08788 232 -------------AMLRARRRVNPLSLEELMDITEIWVDAALQLEEKDLRTMERLVR 275 (287)
T ss_pred -------------HHHHHHHhhccCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 22233333334578888888877777655544 44556666663
No 95
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.4e-40 Score=348.44 Aligned_cols=203 Identities=26% Similarity=0.344 Sum_probs=175.8
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCC---
Q 004892 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG--- 77 (724)
Q Consensus 2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~--- 77 (724)
++++|.++. +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++.......
T Consensus 8 ~~~~v~~e~-~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~ 86 (302)
T PRK08272 8 NLKTMTYEV-TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGG 86 (302)
T ss_pred CCCeEEEEe-ECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccc
Confidence 467789998 7899999999995 79999999999999999999999999999999999999999999886422100
Q ss_pred c----------------cc-----ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCccc
Q 004892 78 D----------------VS-----LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL 136 (724)
Q Consensus 78 ~----------------~~-----~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~ 136 (724)
. .. .......+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~ 165 (302)
T PRK08272 87 GAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGF-MSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPT 165 (302)
T ss_pred cccccccccccccccccccchhhHHHHHHHHHHH-HHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcch
Confidence 0 00 0012223445 568899999999999999999999999999999999999999999
Q ss_pred ccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhh
Q 004892 137 TLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR 209 (724)
Q Consensus 137 ~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~ 209 (724)
++|.+|.. .++++++|..+|++|++||++++|+||+++||||+|||++++.+++.++|++|++.|+.+++
T Consensus 166 ~~gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~~~~a~~ 235 (302)
T PRK08272 166 RVWGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAVPVNQLA 235 (302)
T ss_pred hcccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 98666643 35788999999999999999999999999999999999999999999999999999886554
No 96
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.2e-38 Score=342.85 Aligned_cols=281 Identities=22% Similarity=0.260 Sum_probs=216.1
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCc---c
Q 004892 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD---V 79 (724)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~---~ 79 (724)
+.|.++. .+++++||||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++........ .
T Consensus 42 ~~v~~e~-~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~ 120 (407)
T PLN02851 42 DQVLVEG-RAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEEC 120 (407)
T ss_pred CCeEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence 3577888 7899999999996 799999999999999999999999999999999999999999999865321111 1
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004892 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (724)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a 159 (724)
..+.....++. ..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|. .+
T Consensus 121 ~~~f~~~~~l~-~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~-~g 198 (407)
T PLN02851 121 KLFFENLYKFV-YLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGY-LG 198 (407)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCH-HH
Confidence 11122222333 56889999999999999999999999999999999999999999999999999999999999997 59
Q ss_pred HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhh-c--cC-------------------CC
Q 004892 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLH-R--TD-------------------KL 217 (724)
Q Consensus 160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~-~--~~-------------------~~ 217 (724)
++|++||+++++++|+++||+|++||++++ +.+.+.+.++...++..+.... . .. ..
T Consensus 199 ~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l-~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~ 277 (407)
T PLN02851 199 EYLALTGQKLNGVEMIACGLATHYCLNARL-PLIEERLGKLLTDDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGH 277 (407)
T ss_pred HHHHHhCCcCCHHHHHHCCCceeecCHhhH-HHHHHHHHhhccCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCC
Confidence 999999999999999999999999999987 5666666655444322222110 0 00 00
Q ss_pred CCcHHHHHHHHH---------HHHHHHHhCCCChh-HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh---CCHHHHHHHH
Q 004892 218 GSLSEAREVLKL---------ARLQAKKTAPNMPQ-HQACLDVIEEGIVHGGYSGVLKEAKVFKELV---MLDTSRGLVH 284 (724)
Q Consensus 218 ~~~~~~~~~~~~---------~~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~---~s~~~~~~~~ 284 (724)
.++....+.+.. +....+.....-|- ...+.+.++.+...++++.++.|.+.-..++ .++|+.|||+
T Consensus 278 ~sv~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVR 357 (407)
T PLN02851 278 DTVEEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVR 357 (407)
T ss_pred CCHHHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHH
Confidence 111111111111 11112222233443 4456788889999999999999999888877 4899999999
Q ss_pred HHHH
Q 004892 285 VFFA 288 (724)
Q Consensus 285 af~~ 288 (724)
+-+-
T Consensus 358 A~LI 361 (407)
T PLN02851 358 ARLV 361 (407)
T ss_pred HHhc
Confidence 9886
No 97
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=3.5e-38 Score=334.97 Aligned_cols=262 Identities=25% Similarity=0.348 Sum_probs=244.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004892 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (724)
|++|+|||+|.||++||..|+++|++|++||++++.++.+.++++..+..+.+.|.++..+....+.++..++++ ++++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 568999999999999999999999999999999999999999999889889999999888888888899888888 4679
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCCH
Q 004892 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (724)
Q Consensus 387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~ 466 (724)
+||+||+|+|++.++++.+++++.+.++++++|+|+||++++++++..+.++.++++.||++|++.++++|+++++.|++
T Consensus 82 ~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~~t~~ 161 (308)
T PRK06129 82 DADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAP 161 (308)
T ss_pred CCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEE-cCCCchhhhhhhhHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---ccHHHHHHhh--
Q 004892 467 QVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQLLDLA-- 538 (724)
Q Consensus 467 e~~~~~~~l~~~lGk~~v~v-~d~pG~i~nRl~~~~~~Ea~~l~~~G-v~~~~ID~a~-~~~g~~---~Gp~~~~D~~-- 538 (724)
++++.++++++.+|++|+++ ++.|||++||++.++++||+.++++| +++++||.++ .++|++ +|||++.|..
T Consensus 162 ~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~ 241 (308)
T PRK06129 162 ATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNAP 241 (308)
T ss_pred HHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhcccc
Confidence 99999999999999999999 58999999999999999999999997 5999999999 889988 8999999987
Q ss_pred -chHHHHHHHHHHHHhCCCCCC-CcHHHHHHHH
Q 004892 539 -GYGVAAATSKEFDKAFPDRSF-QSPLVDLLLK 569 (724)
Q Consensus 539 -Gld~~~~~~~~l~~~~~~~~~-~~~~l~~~v~ 569 (724)
|++........++.++++..+ |+|++++|++
T Consensus 242 ~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~ 274 (308)
T PRK06129 242 GGVADYAQRYGPMYRRMAAERGQPVPWDGELVA 274 (308)
T ss_pred ccHHHHHHHHHHHHHhhccccCCCchhhHHHHH
Confidence 899999999999988887655 7888888877
No 98
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=5.5e-39 Score=334.65 Aligned_cols=274 Identities=21% Similarity=0.273 Sum_probs=198.6
Q ss_pred EEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCC--CcccccchhHHHHH
Q 004892 15 VAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGA--GDVSLMPDVSVELV 90 (724)
Q Consensus 15 v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~--~~~~~~~~~~~~~~ 90 (724)
+++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++...... .....+.....+++
T Consensus 38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~ 117 (360)
T TIGR03200 38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMV 117 (360)
T ss_pred EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHH
Confidence 4669999996 7999999999999999999999999999999999 699999999988653211 11111222233455
Q ss_pred HHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCC
Q 004892 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT 170 (724)
Q Consensus 91 ~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~ 170 (724)
+.|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|+++|++++
T Consensus 118 -~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~s 196 (360)
T TIGR03200 118 -SAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWS 196 (360)
T ss_pred -HHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCc
Confidence 6689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCcceecCcchH------------HHHHHHHHHHHHccCch--hhhhhhccCCCCCcHHHHHHHHHH-HHHHH
Q 004892 171 SEEGWKLGLIDAVVTSEEL------------LKVSRLWALDIAARRKP--WIRSLHRTDKLGSLSEAREVLKLA-RLQAK 235 (724)
Q Consensus 171 a~eA~~~Glv~~vv~~~~l------------~~~a~~~a~~la~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 235 (724)
|+||+++||||+|||++++ ++.+.++++.+...++. ..+..+..-+..+... ..+... .....
T Consensus 197 A~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~--~~l~~~~~~l~~ 274 (360)
T TIGR03200 197 AHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKELIKQGTIDL--SLLDEAVEALCA 274 (360)
T ss_pred HHHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHHHHHHhcccchH--hHHHHHHHHHHH
Confidence 9999999999999999988 78888888887777654 2222211111100000 001111 01111
Q ss_pred HhCCCChh-HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhh
Q 004892 236 KTAPNMPQ-HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT 292 (724)
Q Consensus 236 ~~~~~~~a-~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~ 292 (724)
+..+.||. ....++-++.-.......--..-+..++..+. -|+++++.+|-++.+.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 331 (360)
T TIGR03200 275 KLLNTFPECLTKSIEELRKPKLFAWNQNKENSRAWLALNMM-NEARTGFRAFNEGKKE 331 (360)
T ss_pred HHHHhchHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHhhcc-cccchhhHHHhccccc
Confidence 12222331 11112222222222223333344556666665 8899999999986443
No 99
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=1e-39 Score=307.95 Aligned_cols=255 Identities=24% Similarity=0.334 Sum_probs=221.1
Q ss_pred CCcEEEE--EecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccC---C
Q 004892 3 APRVTME--VGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG---A 76 (724)
Q Consensus 3 ~~~v~~~--~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~---~ 76 (724)
|+.+.+. ..+..|..+.|||| +.|++|..|+.|+.++++.+..||++|+|||+|+|++||+|+|+..+..... +
T Consensus 18 ~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~~ 97 (292)
T KOG1681|consen 18 YKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQPE 97 (292)
T ss_pred cceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhccccc
Confidence 4444444 33567999999999 5899999999999999999999999999999999999999999877654211 1
Q ss_pred -Cc-------ccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhh
Q 004892 77 -GD-------VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ 148 (724)
Q Consensus 77 -~~-------~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~ 148 (724)
.+ ..+++...++.+ ..|++||||||++|||+|+|+|+.|..|||+|+|+++|.|..-|+.+|+..+.|...
T Consensus 98 ~dd~aR~g~~lrr~Ik~~Q~~~-t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~ 176 (292)
T KOG1681|consen 98 GDDVARKGRSLRRIIKRYQDTF-TAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLN 176 (292)
T ss_pred cchHhhhhHHHHHHHHHHHHHH-HHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHh
Confidence 11 123334455666 569999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccc-HHHHHHHHHcCCCCCHHHHHHCCCcceecC-cchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHH
Q 004892 149 RLPRLVG-LSKAIEMMLLSKSITSEEGWKLGLIDAVVT-SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREV 226 (724)
Q Consensus 149 ~l~r~~G-~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~-~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (724)
|||..+| ...++++.+|++.++|.||++.|||.+|+| .+++++.+..+|..|+.++|.+.+
T Consensus 177 RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KSpvaVq----------------- 239 (292)
T KOG1681|consen 177 RLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASKSPVAVQ----------------- 239 (292)
T ss_pred hhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCCceeee-----------------
Confidence 9999999 899999999999999999999999999996 478999999999999999986443
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 227 LKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 227 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
..|+.+..+.+++.++.|..-..+-..++.|+|..+.+.+-++|+++..
T Consensus 240 -------------------gTK~~L~ysrehsv~~sLnyvatwNms~L~s~Dl~~av~a~m~k~k~~t 288 (292)
T KOG1681|consen 240 -------------------GTKENLLYSREHSVEESLNYVATWNMSMLLSDDLVKAVMAQMEKLKTVT 288 (292)
T ss_pred -------------------chHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 3467788888899999999998888889999999999999998776553
No 100
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=2.3e-38 Score=322.64 Aligned_cols=197 Identities=24% Similarity=0.343 Sum_probs=168.8
Q ss_pred EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEEcCCCCccCCCCchhhhhccCCCc-ccccc
Q 004892 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVK-AIVLTGNGGRFSGGFDINVFQKVHGAGD-VSLMP 83 (724)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~F~aG~Dl~~~~~~~~~~~-~~~~~ 83 (724)
++++. +++|++|+||||+.|+||.+|+++|.++++.++.|++++ +||++|.|++||+|+|++++........ .....
T Consensus 2 ~~~~~-~~~v~~i~Lnrp~~Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~ 80 (239)
T PLN02267 2 CTLEK-RGNLFILTLTGDGEHRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMV 80 (239)
T ss_pred ceeEe-cCCEEEEEeCCCCcCcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHH
Confidence 56777 789999999999889999999999999999999998875 7777999999999999998753211111 11122
Q ss_pred hhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEe-CCceeeCcccccCcc-CCcchhhhhcccccHHHH-H
Q 004892 84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVI-PGFGGTQRLPRLVGLSKA-I 160 (724)
Q Consensus 84 ~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~G~~-P~~g~~~~l~r~~G~~~a-~ 160 (724)
....+++ ..|.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++ |+++ +.++++++|..++ +
T Consensus 81 ~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~-~~~l~~~vG~~~a~~ 158 (239)
T PLN02267 81 AKLRPLV-ADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYF-MALLRAKIGSPAARR 158 (239)
T ss_pred HHHHHHH-HHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHH-HHHHHHHcChHHHHH
Confidence 2344555 66999999999999999999999999999999998 568999999999997 6554 7899999999999 6
Q ss_pred HHHHcCCCCCHHHHHHCCCcceecCc-chHHHHHHHHHHHHHccCc
Q 004892 161 EMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRK 205 (724)
Q Consensus 161 ~l~ltg~~i~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~ 205 (724)
+|+++|++++|+||+++||||+|+|+ +++.+++.++|+++++.++
T Consensus 159 ~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~~~ 204 (239)
T PLN02267 159 DVLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAARKW 204 (239)
T ss_pred HHHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999985 6899999999999998754
No 101
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=100.00 E-value=7.8e-38 Score=292.93 Aligned_cols=252 Identities=29% Similarity=0.380 Sum_probs=203.1
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC--C-CCccCCCCchhhhhc---cC
Q 004892 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--G-GRFSGGFDINVFQKV---HG 75 (724)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~--g-~~F~aG~Dl~~~~~~---~~ 75 (724)
|..|.++..-++|+.||||||. +|++.+..+.||.+++..++.|++|.+|||||. | ..||+|+|-+--... ..
T Consensus 17 y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~ 96 (282)
T COG0447 17 YEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVD 96 (282)
T ss_pred cceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccC
Confidence 5678899844899999999996 799999999999999999999999999999985 4 579999997644321 11
Q ss_pred CCcccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhccccc
Q 004892 76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (724)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G 155 (724)
+.....+ ..--+++.|+.+||||||.|+|.|+|||-.|-+-||+.||+++|+|+....++|-+-++.|+..|.|++|
T Consensus 97 d~~~~rL---nvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VG 173 (282)
T COG0447 97 DDGIPRL---NVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVG 173 (282)
T ss_pred CccCccc---chhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhh
Confidence 1111111 1112346689999999999999999999999999999999999999999999999987777888999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 004892 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK 235 (724)
Q Consensus 156 ~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (724)
..+|+|+.+.++.++|+||+++|+||.|||.++|++++.+|++++.++||.++|-+
T Consensus 174 qKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kSP~AlR~L------------------------ 229 (282)
T COG0447 174 QKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAKSPTALRML------------------------ 229 (282)
T ss_pred hhhhHHhhhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHHHHhcChHHHHHH------------------------
Confidence 99999999999999999999999999999999999999999999999998765521
Q ss_pred HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
|-+++ +...++.-.-+..-.+......|+|++|++.+|++||+|..
T Consensus 230 ------------K~Afn-ad~DGlaG~q~~ag~at~L~YmTdEa~EGr~AF~eKR~Pdf 275 (282)
T COG0447 230 ------------KAAFN-ADCDGLAGLQELAGNATLLYYMTDEAQEGRDAFLEKRKPDF 275 (282)
T ss_pred ------------HHHhc-CCCchhhHHHHhcccceEEEEechhhhhhHHHHhhccCCCh
Confidence 11111 11111111112222333446789999999999999999864
No 102
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=2e-36 Score=294.00 Aligned_cols=253 Identities=22% Similarity=0.282 Sum_probs=223.8
Q ss_pred CCCCcEEEEEecCcEEEEEeC-CCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCc
Q 004892 1 MAAPRVTMEVGNDGVAIITLI-NPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (724)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~-~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (724)
|.+..+.++. ++++.+|.+| ||+ .|+++.++..++..+++.+..|+++..+|++|.|++||+|.|+..+......+.
T Consensus 4 ~~~~~~vv~~-~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~ 82 (266)
T KOG0016|consen 4 MRYREIVVTR-ENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDA 82 (266)
T ss_pred ccccceEEEe-cCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCcc
Confidence 5677788888 8999999999 996 699999999999999999999999999999999999999999998876433221
Q ss_pred ---ccccchhH--HHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhccc
Q 004892 79 ---VSLMPDVS--VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL 153 (724)
Q Consensus 79 ---~~~~~~~~--~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~ 153 (724)
........ ...+.+.+.++|||+||.|||+|+|.|..+.-.||+++|+|+++|..|+.++|+.|.+|+++.+|++
T Consensus 83 ~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~i 162 (266)
T KOG0016|consen 83 NEESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKI 162 (266)
T ss_pred cccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHh
Confidence 11111111 1224477899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHH
Q 004892 154 VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQ 233 (724)
Q Consensus 154 ~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (724)
+|...|.||++.|++++|+||.+.|||+++++.+.+.+.+..-++++++.+|..++
T Consensus 163 mG~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l~p~sl~------------------------ 218 (266)
T KOG0016|consen 163 MGSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKIKQYSKLSPESLL------------------------ 218 (266)
T ss_pred hchhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHHHHHhcCCHHHHH------------------------
Confidence 99999999999999999999999999999999999999999999999998876544
Q ss_pred HHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 004892 234 AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQR 290 (724)
Q Consensus 234 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r 290 (724)
.+|++++......+..+.+.|.......|.|+|+.+.+.+|+.+.
T Consensus 219 ------------~~K~L~rs~~k~~l~~an~~E~~~l~~~W~s~e~~~~~~~~~~~~ 263 (266)
T KOG0016|consen 219 ------------GMKKLLRSNIKEELIKANEEECNVLLKQWVSAECLARFKQYLSKK 263 (266)
T ss_pred ------------HHHHHHHHHHHHHHHHhhHHHHHHHHhhccChHHHHHHHHHhccc
Confidence 346777777778889999999999999999999999999999754
No 103
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=100.00 E-value=1.3e-36 Score=295.92 Aligned_cols=180 Identities=40% Similarity=0.620 Sum_probs=161.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCC
Q 004892 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (724)
Q Consensus 310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 389 (724)
||+|||+|.||.+||..++.+|++|++||++++.++.+.+++++.++..++++.+++++....+++++++++++++.+||
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~ad 80 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVDAD 80 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCTES
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhhhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998878999
Q ss_pred EEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCCHHHH
Q 004892 390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVI 469 (724)
Q Consensus 390 lVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~ 469 (724)
+||||+||+.++|+++|+++++.+++++||+||||++++++++..+.+|+||+|+|||+|++.+++|||++++.|+++++
T Consensus 81 lViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~ 160 (180)
T PF02737_consen 81 LVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKTSPETV 160 (180)
T ss_dssp EEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-HHHH
T ss_pred eehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeeEEEcCC
Q 004892 470 LDLMTVGKIIKKVPVVVGNC 489 (724)
Q Consensus 470 ~~~~~l~~~lGk~~v~v~d~ 489 (724)
+++.+|++.+||.|++++|+
T Consensus 161 ~~~~~~~~~~gk~pv~v~D~ 180 (180)
T PF02737_consen 161 DRVRALLRSLGKTPVVVKDT 180 (180)
T ss_dssp HHHHHHHHHTT-EEEEEES-
T ss_pred HHHHHHHHHCCCEEEEecCC
Confidence 99999999999999999873
No 104
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=100.00 E-value=6e-35 Score=328.17 Aligned_cols=244 Identities=25% Similarity=0.325 Sum_probs=208.1
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004892 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (724)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (724)
+++||+|||+|+||++||..|+++|++|++||+++++++...+.++...... +.+.... ....+++++++++ +++
T Consensus 3 ~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~---~~l~~~~-~~~~g~i~~~~~~~ea~ 78 (495)
T PRK07531 3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAY---AMLTDAP-LPPEGRLTFCASLAEAV 78 (495)
T ss_pred CcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHH---hhhccch-hhhhhceEeeCCHHHHh
Confidence 3679999999999999999999999999999999999876543332221111 1111110 1123456777777 578
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCC
Q 004892 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS 465 (724)
Q Consensus 386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~ 465 (724)
++||+||+|+||+.++|+++|+++.+.+++++||+|+||+++++++++.+..+.++++.|||+|++.++++|+++++.|+
T Consensus 79 ~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~ 158 (495)
T PRK07531 79 AGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTS 158 (495)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCC
Confidence 99999999999999999999999999999999999999999999999989899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCeeEEE-cCCCchhhhhhhhHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---ccHHHHHHhhc
Q 004892 466 AQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQLLDLAG 539 (724)
Q Consensus 466 ~e~~~~~~~l~~~lGk~~v~v-~d~pG~i~nRl~~~~~~Ea~~l~~~G-v~~~~ID~a~-~~~g~~---~Gp~~~~D~~G 539 (724)
+++++.++++++.+|+.++++ ++.|||++||++.++++||+.++++| +++++||+++ .++|++ +|||+++|+.|
T Consensus 159 ~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g 238 (495)
T PRK07531 159 PETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQMGLFETYRIAG 238 (495)
T ss_pred HHHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccccchHHHHHhcC
Confidence 999999999999999999999 59999999999999999999999997 5999999999 788875 79999999998
Q ss_pred h-HHHHHHHHHHHHhC
Q 004892 540 Y-GVAAATSKEFDKAF 554 (724)
Q Consensus 540 l-d~~~~~~~~l~~~~ 554 (724)
+ +.+.+.++++.+.+
T Consensus 239 ~~~g~~~~~~~~~~~~ 254 (495)
T PRK07531 239 GEAGMRHFLAQFGPCL 254 (495)
T ss_pred cHHHHHHHHHHhchhh
Confidence 5 45666666665544
No 105
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=7.4e-36 Score=276.65 Aligned_cols=245 Identities=23% Similarity=0.343 Sum_probs=210.6
Q ss_pred cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHH
Q 004892 12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (724)
Q Consensus 12 ~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (724)
+++|-.|+||+|+ +|+++..|+.+|.+.+.....+.++|+|||+..|+.||+|.||+|+...+........+....+.+
T Consensus 39 ~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haevFqtc~dvm 118 (287)
T KOG1682|consen 39 HNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEVFQTCTDVM 118 (287)
T ss_pred ccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCccchHHHHHHHHHHHHH
Confidence 6899999999995 899999999999999999888889999999999999999999999986443332334444455666
Q ss_pred HHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCC
Q 004892 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT 170 (724)
Q Consensus 91 ~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~ 170 (724)
+-|+++|+||||-|||.|..+||.|...||+++|+++++|..|..++|++-...|.. |.|.+++..+.+|++||.+|+
T Consensus 119 -n~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGvA-laRavpRkva~~ML~Tg~Pi~ 196 (287)
T KOG1682|consen 119 -NDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGVA-LARAVPRKVAAYMLMTGLPIT 196 (287)
T ss_pred -HHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcchh-HhhhcchhHHHHHHHhCCCCc
Confidence 559999999999999999999999999999999999999999999999976555544 889999999999999999999
Q ss_pred HHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004892 171 SEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDV 250 (724)
Q Consensus 171 a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 250 (724)
++||+..||+++|||.+++..++.+++.+|...+...+. .. |+.
T Consensus 197 ~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~srav~s------------lg------------------------k~f 240 (287)
T KOG1682|consen 197 GEEALISGLVSKVVPAEELDKEIEEITNAIKAKSRAVIS------------LG------------------------KEF 240 (287)
T ss_pred hHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhhHHHHHH------------HH------------------------HHH
Confidence 999999999999999999999999999999877654322 11 223
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004892 251 IEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (724)
Q Consensus 251 ~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~ 294 (724)
.+....++..+++....+.+...++-.|++|+|.+|++||.+.+
T Consensus 241 ~y~q~~ms~~ea~~~~~~~m~~n~ql~d~kegiasf~~krp~~~ 284 (287)
T KOG1682|consen 241 YYKQLAMSQAEAFSAAQEKMCENFQLGDTKEGIASFFEKRPPNW 284 (287)
T ss_pred HHHHHHHhHHHHHHHHHHHHhhcccccchHHHHHHHhccCCCCc
Confidence 33444456667788888899999999999999999999998875
No 106
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=1.7e-35 Score=329.54 Aligned_cols=202 Identities=22% Similarity=0.323 Sum_probs=174.0
Q ss_pred CCcEEEEEecCcEEEEEeCCC-----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcC-CCCccCCCCchh
Q 004892 3 APRVTMEVGNDGVAIITLINP-----------PVNALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGN-GGRFSGGFDINV 69 (724)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p-----------~~Nal~~~~~~~l~~~l~~~~-~d~~v~~vVl~g~-g~~F~aG~Dl~~ 69 (724)
+++|.++. +++|++|||||| +.|++|.+|+.+|.++++.++ .|+++|+|||||. |++||+|+|+++
T Consensus 10 ~~~v~~~~-~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~ 88 (546)
T TIGR03222 10 YRHWKLTF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFM 88 (546)
T ss_pred CceEEEEe-eCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHH
Confidence 45788888 789999999996 469999999999999999999 7899999999987 589999999998
Q ss_pred hhhccCCCcccccchhH---HHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCC--ceeeCcccc-cCccCC
Q 004892 70 FQKVHGAGDVSLMPDVS---VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELT-LGVIPG 143 (724)
Q Consensus 70 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~--a~f~~pe~~-~G~~P~ 143 (724)
+....... ........ .+.+.+.+.++||||||+|||+|+|||++|+++||+||++++ ++|++||++ +|++|+
T Consensus 89 ~~~~~~~~-~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~ 167 (546)
T TIGR03222 89 LGLSTHAW-KVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPG 167 (546)
T ss_pred Hhccccch-hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCc
Confidence 75321111 11111111 112224577899999999999999999999999999999986 799999997 999999
Q ss_pred cchhhhhc--ccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCch
Q 004892 144 FGGTQRLP--RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKP 206 (724)
Q Consensus 144 ~g~~~~l~--r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~ 206 (724)
+|++++++ +++|..+|++|+++|++++|+||+++||||+|||++++++++.++|+++++.|+.
T Consensus 168 ~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~ 232 (546)
T TIGR03222 168 TGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQSDR 232 (546)
T ss_pred cchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHhCCCC
Confidence 99999997 7999999999999999999999999999999999999999999999999998764
No 107
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=2.2e-35 Score=329.98 Aligned_cols=204 Identities=22% Similarity=0.308 Sum_probs=176.6
Q ss_pred CCCCcEEEEEecCcEEEEEeCCC-----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcCC-CCccCCCCc
Q 004892 1 MAAPRVTMEVGNDGVAIITLINP-----------PVNALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGNG-GRFSGGFDI 67 (724)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p-----------~~Nal~~~~~~~l~~~l~~~~-~d~~v~~vVl~g~g-~~F~aG~Dl 67 (724)
|+++++.++. +++|++|||||| +.|++|.+|+.+|.+++++++ .|+++|+|||||.+ ++||+|+|+
T Consensus 12 ~~~~~~~~e~-~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL 90 (550)
T PRK08184 12 SQYRHWKLSF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANI 90 (550)
T ss_pred CCCceEEEEe-eCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCH
Confidence 6788899999 789999999954 469999999999999999999 78999999999974 899999999
Q ss_pred hhhhhccCCCcccccch---hHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCC--ceeeCcccc-cCcc
Q 004892 68 NVFQKVHGAGDVSLMPD---VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELT-LGVI 141 (724)
Q Consensus 68 ~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~--a~f~~pe~~-~G~~ 141 (724)
+++....... ...... .....+.+.+.++||||||+|||+|+|||++|+++|||||++++ ++|++||++ +|++
T Consensus 91 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~ 169 (550)
T PRK08184 91 FMLGGSSHAW-KVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVL 169 (550)
T ss_pred HhHhccccch-hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccC
Confidence 9875321111 001111 11122325678899999999999999999999999999999987 899999997 9999
Q ss_pred CCcchhhhhc--ccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCch
Q 004892 142 PGFGGTQRLP--RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKP 206 (724)
Q Consensus 142 P~~g~~~~l~--r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~ 206 (724)
|++|++++|+ +++|..+|++|+++|++++|+||+++||||+|||++++.+++.+++.+|++.++.
T Consensus 170 P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~~~~ 236 (550)
T PRK08184 170 PGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAASDR 236 (550)
T ss_pred CCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999998 7899999999999999999999999999999999999999999999999998864
No 108
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=100.00 E-value=2.7e-35 Score=292.74 Aligned_cols=192 Identities=44% Similarity=0.704 Sum_probs=173.6
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCc-ccccc
Q 004892 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VSLMP 83 (724)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~-~~~~~ 83 (724)
+.+++ +++|++|+||+|+ .|++|.+|+++|.++++.++.|+++++|||||.|+.||+|+|++++.......+ ...+.
T Consensus 1 i~~~~-~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~ 79 (195)
T cd06558 1 VLVER-DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFI 79 (195)
T ss_pred CEEEE-ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHH
Confidence 35667 6799999999997 899999999999999999999999999999999999999999999876433221 22344
Q ss_pred hhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHH
Q 004892 84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM 163 (724)
Q Consensus 84 ~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ 163 (724)
....+++ +.+..+|||+||++||+|.|+|++++++|||||++++++|++||+++|++|++|++++|++++|...+++++
T Consensus 80 ~~~~~~~-~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~ 158 (195)
T cd06558 80 RELQELL-RALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELL 158 (195)
T ss_pred HHHHHHH-HHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHH
Confidence 4455666 678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHH
Q 004892 164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALD 199 (724)
Q Consensus 164 ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ 199 (724)
++|++++++||+++||||++++.+++.+++.+++++
T Consensus 159 l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~a~~ 194 (195)
T cd06558 159 LTGRRISAEEALELGLVDEVVPDEELLAAALELARR 194 (195)
T ss_pred HcCCccCHHHHHHcCCCCeecChhHHHHHHHHHHhh
Confidence 999999999999999999999999999999988875
No 109
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=1.8e-34 Score=273.20 Aligned_cols=229 Identities=25% Similarity=0.408 Sum_probs=212.7
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhc----CCCCHHHHHHhhcCcccccCc
Q 004892 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTR----GKLTQDKANNALKMLKGVLDY 382 (724)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~----g~~~~~~~~~~~~~i~~~~~~ 382 (724)
.+.||+|+|.|..|+++|..|+..||+|.+||+.++++..+.+.+++.+.++-+. |.++. ++.+..|..++++
T Consensus 2 s~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa---~eqla~is~t~~l 78 (313)
T KOG2305|consen 2 SFGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSA---DEQLALISGTTSL 78 (313)
T ss_pred CccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccH---HHHHHHHhCCccH
Confidence 4689999999999999999999999999999999999999999999988877664 55554 4456788889998
Q ss_pred -cCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecC
Q 004892 383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRT 461 (724)
Q Consensus 383 -~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~ 461 (724)
|.+++|=.|-|||||++.+|+.+|++++..+.+.+|++|+||++.++...+.+.+.++++..||.|||+..|+||++|.
T Consensus 79 ~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPa 158 (313)
T KOG2305|consen 79 NELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPA 158 (313)
T ss_pred HHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCeeEEE-cCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCc---cHHHHH
Q 004892 462 ERTSAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPI---GPFQLL 535 (724)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lGk~~v~v-~d~pG~i~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~g~~~---Gp~~~~ 535 (724)
+-|+++++++.+++++.+|..||.. .+.-||.+||++++++||-.+++..|+ +..|+|.+| .|+|++. ||+|.+
T Consensus 159 PwTsp~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dvD~VmS~GLG~RYAflG~lET~ 238 (313)
T KOG2305|consen 159 PWTSPDTVDRTRALMRSIGQEPVTLKREILGFALNRIQYAILNETWRLVASGILNVNDVDAVMSAGLGPRYAFLGPLETA 238 (313)
T ss_pred CCCChhHHHHHHHHHHHhCCCCcccccccccceeccccHHHHHHHHHHHHccCcchhhHHHHHhcCCCcchhcccchhhh
Confidence 9999999999999999999999987 689999999999999999999999997 999999999 8999763 999998
Q ss_pred Hhh
Q 004892 536 DLA 538 (724)
Q Consensus 536 D~~ 538 (724)
.+-
T Consensus 239 HLN 241 (313)
T KOG2305|consen 239 HLN 241 (313)
T ss_pred hcC
Confidence 874
No 110
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.97 E-value=2e-30 Score=261.64 Aligned_cols=289 Identities=24% Similarity=0.308 Sum_probs=216.2
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC-CCCccCCCCchhhhhccCCCc---
Q 004892 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGD--- 78 (724)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~--- 78 (724)
+.|.++. .+....||||||+ .||+|.+|...+.-.+..++.++.+++||+.|. |++||+|+|+........+.+
T Consensus 38 ~~VL~e~-~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~ 116 (401)
T KOG1684|consen 38 DQVLVEG-KGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPE 116 (401)
T ss_pred CceEEec-CCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchH
Confidence 4678888 7889999999997 799999999999999999999999999999877 589999999986654322221
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHH
Q 004892 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (724)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~ 158 (724)
...++..--.+. ..|.++.||.||.++|..+|||++|+.+--||||++++.|.+||..+|++|+.|++++|+|+.| ..
T Consensus 117 ~~~fF~~eYsl~-~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg-~l 194 (401)
T KOG1684|consen 117 VKKFFTEEYSLN-HLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG-YL 194 (401)
T ss_pred HHHHHHHHHHHH-HHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc-HH
Confidence 122222221223 5689999999999999999999999999999999999999999999999999999999999999 88
Q ss_pred HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhh----hcc---------------C---C
Q 004892 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL----HRT---------------D---K 216 (724)
Q Consensus 159 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~----~~~---------------~---~ 216 (724)
..++.|||+++++.+|+..||.++.||.+.|..--.++...+...|...+... ... + .
T Consensus 195 g~YLgLTG~rl~GaD~~~~GlATHyv~S~~l~~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~~~Fs 274 (401)
T KOG1684|consen 195 GLYLGLTGQRLSGADALRCGLATHYVPSEKLPSLEERLLKNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVINKCFS 274 (401)
T ss_pred HHhhhhccceecchHHHHhcchhhccchhhhhHHHHHHhhhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHHHhhc
Confidence 99999999999999999999999999987764433333322222221111110 000 0 0
Q ss_pred CCCcHHHHHHHH----------HHHHHHHHhCCCCh-hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004892 217 LGSLSEAREVLK----------LARLQAKKTAPNMP-QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHV 285 (724)
Q Consensus 217 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~a 285 (724)
..+..+..+.++ .+....|+...--| ......+.++++....+++.+..|-+.-.....+.|+.|+++|
T Consensus 275 ~~tVeeIie~lk~~q~~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l~~Eyr~s~~~~~~~DF~EGvRA 354 (401)
T KOG1684|consen 275 ANTVEEIIEALKNYQQSADGSEWAKETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCLTMEYRLSLRMLMRGDFCEGVRA 354 (401)
T ss_pred cccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchhhhhhh
Confidence 011112222111 11222233444445 3445578899999999999999999999999999999999998
Q ss_pred HHH--hhhhcCC
Q 004892 286 FFA--QRATSKV 295 (724)
Q Consensus 286 f~~--~r~~~~~ 295 (724)
-+- .++|+|.
T Consensus 355 ~LIDKd~~PKW~ 366 (401)
T KOG1684|consen 355 VLIDKDQNPKWD 366 (401)
T ss_pred eeecCCcCCCCC
Confidence 775 2334443
No 111
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.94 E-value=4e-26 Score=256.09 Aligned_cols=161 Identities=15% Similarity=0.148 Sum_probs=148.7
Q ss_pred hCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc
Q 004892 412 ACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 491 (724)
Q Consensus 412 ~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG 491 (724)
.+.+++++++..++.+.+..+....+|++++|+|||+|++.++++||++++.|++++++.+.++++.+||.||+++|.||
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~gk~pi~v~d~~G 416 (507)
T PRK08268 337 PSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQDGKAVSVIRDSPG 416 (507)
T ss_pred cccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEeCCCcc
Confidence 34677788777777767777766678999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCCCCC-CcHHHHHHH
Q 004892 492 FAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSF-QSPLVDLLL 568 (724)
Q Consensus 492 ~i~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~g~~~Gp~~~~D~~Gld~~~~~~~~l~~~~~~~~~-~~~~l~~~v 568 (724)
||+||++.+++|||++++++|+ +++|||.++ .++|||+|||+++|.+|+|+++++++.+++.++++.| |++++++|+
T Consensus 417 fi~nRll~~~~nEa~~ll~eGvas~~dID~a~~~g~G~p~GP~~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~ll~~~v 496 (507)
T PRK08268 417 FVAQRTVAMIVNEAADIAQQGIASPADIDLAMRLGLNYPLGPLAWGDRLGAARILRVLENLQALYGDPRYRPSPWLRRRA 496 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhCHHHHHHHHHHHHHHhCCCcCCcCHHHHHHH
Confidence 9999999999999999999997 899999999 8999999999999999999999999999999997555 889999999
Q ss_pred HcCC
Q 004892 569 KSGR 572 (724)
Q Consensus 569 ~~g~ 572 (724)
++|.
T Consensus 497 ~~G~ 500 (507)
T PRK08268 497 ALGL 500 (507)
T ss_pred HcCC
Confidence 9864
No 112
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=99.90 E-value=2.6e-24 Score=188.29 Aligned_cols=94 Identities=40% Similarity=0.689 Sum_probs=87.5
Q ss_pred chhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCCCCC-CcHHHHHH
Q 004892 491 GFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSF-QSPLVDLL 567 (724)
Q Consensus 491 G~i~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~g~~~Gp~~~~D~~Gld~~~~~~~~l~~~~~~~~~-~~~~l~~~ 567 (724)
|||+||++.++++||++++++|+ ++++||.++ .++|+|+|||+++|.+|+|++.++++.+++.++++.+ |++++++|
T Consensus 1 GFi~nRl~~~~~~ea~~l~~egvas~~~ID~~~~~~~G~p~Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~m 80 (97)
T PF00725_consen 1 GFIVNRLLAALLNEAARLVEEGVASPEDIDRAMRYGLGFPMGPFELADLVGLDVVYHILEYLAAALGDRAFRPSPLLKEM 80 (97)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTHSSTHHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHHHHHH
Confidence 89999999999999999999995 999999999 7899999999999999999999999999999998855 78999999
Q ss_pred HHcCCCCcccCccceec
Q 004892 568 LKSGRNGKANGKGLYTY 584 (724)
Q Consensus 568 v~~g~~G~k~g~Gfy~y 584 (724)
+++|++|+|+|+|||+|
T Consensus 81 v~~g~~G~k~g~Gfy~Y 97 (97)
T PF00725_consen 81 VEEGRLGRKSGKGFYDY 97 (97)
T ss_dssp HHTT--BGGGTBSSSBE
T ss_pred HHCCCCcCcCCCcceeC
Confidence 99999999999999998
No 113
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.86 E-value=2.2e-21 Score=217.12 Aligned_cols=119 Identities=15% Similarity=0.191 Sum_probs=113.3
Q ss_pred CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccH
Q 004892 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGP 531 (724)
Q Consensus 454 ~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~g~~~Gp 531 (724)
+.+||++++.|++++++++.++++.+||.|++++|.||||+||++.+++|||++++++|+ +++|||.++ .++|||+||
T Consensus 378 ~~vEv~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGvas~~dID~a~~~g~G~P~GP 457 (503)
T TIGR02279 378 KRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQIADYPGLLILRTVAMLANEAADAVLQGVASAQDIDTAMRLGVNYPYGP 457 (503)
T ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCcCH
Confidence 578999999999999999999999999999999999999999999999999999999998 899999999 899999999
Q ss_pred HHHHHhhchHHHHHHHHHHHHhCCCCCC-CcHHHHHHHHcCC
Q 004892 532 FQLLDLAGYGVAAATSKEFDKAFPDRSF-QSPLVDLLLKSGR 572 (724)
Q Consensus 532 ~~~~D~~Gld~~~~~~~~l~~~~~~~~~-~~~~l~~~v~~g~ 572 (724)
|+|+|.+|+|+++++++++++.+++.+| |++++++|+..|.
T Consensus 458 ~~~~D~~Gld~~~~~l~~l~~~~~~~~~~p~~~L~~~v~~g~ 499 (503)
T TIGR02279 458 LAWAAQLGWQRILRVLENLQHHYGEERYRPSSLLRRRALLGS 499 (503)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHcCCCcCCcCHHHHHHHHcCC
Confidence 9999999999999999999999996554 8899999999875
No 114
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=99.80 E-value=6.5e-20 Score=160.39 Aligned_cols=89 Identities=34% Similarity=0.518 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCCC-CCCCHH
Q 004892 621 KEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF-FKPSRF 699 (724)
Q Consensus 621 ~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~-~~p~~~ 699 (724)
++|+||++.+++|||++++++|++ |++|||.+++.|+|||+ |||+++|.+|++++.++++.+.+.+++. +.|+++
T Consensus 1 GFi~nRl~~~~~~ea~~l~~egva-s~~~ID~~~~~~~G~p~---Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 76 (97)
T PF00725_consen 1 GFIVNRLLAALLNEAARLVEEGVA-SPEDIDRAMRYGLGFPM---GPFELADLVGLDVVYHILEYLAAALGDRAFRPSPL 76 (97)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSS-SHHHHHHHHHHHHTHSS---THHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HH
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHhCCCCC---ccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHH
Confidence 478999999999999999999999 89999999999999998 9999999999999999999999999874 889999
Q ss_pred HHHHH-------HcCCCCCCC
Q 004892 700 LEERA-------TKGIPLSAP 713 (724)
Q Consensus 700 l~~~~-------k~g~gfy~~ 713 (724)
+++|+ |+|+|||+|
T Consensus 77 l~~mv~~g~~G~k~g~Gfy~Y 97 (97)
T PF00725_consen 77 LKEMVEEGRLGRKSGKGFYDY 97 (97)
T ss_dssp HHHHHHTT--BGGGTBSSSBE
T ss_pred HHHHHHCCCCcCcCCCcceeC
Confidence 99999 789999998
No 115
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.78 E-value=3.7e-19 Score=169.43 Aligned_cols=92 Identities=29% Similarity=0.430 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCC--CCCC
Q 004892 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN--FFKP 696 (724)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~--~~~p 696 (724)
+|+||+||+|.++++||+++++.|.+ |-+|||.+|.+|.|||| |||+++|.+|+|++.-+|.-|++.+++ .|.|
T Consensus 198 tpGFIVNRlLiPyl~ea~r~yerGdA-skeDIDtaMklGagyPM---GPfEL~DyvGLDt~kfvmdgwhe~~pe~~~f~p 273 (298)
T KOG2304|consen 198 TPGFIVNRLLIPYLMEAIRMYERGDA-SKEDIDTAMKLGAGYPM---GPFELADYVGLDTCKFVMDGWHEGYPEDSLFAP 273 (298)
T ss_pred CCchhhhHHHHHHHHHHHHHHHhcCC-cHhhHHHHHhccCCCCC---ChHHHHHHhhHHHHHHHHHHHHhcCCcccccCC
Confidence 68999999999999999999999999 99999999999999999 999999999999999999999999853 8999
Q ss_pred CHHHHHHH-------HcCCCCCCCC
Q 004892 697 SRFLEERA-------TKGIPLSAPV 714 (724)
Q Consensus 697 ~~~l~~~~-------k~g~gfy~~~ 714 (724)
+|+|-+++ |+|+|||+|+
T Consensus 274 sPll~klVaegklGrKtg~GfY~Yk 298 (298)
T KOG2304|consen 274 SPLLDKLVAEGKLGRKTGEGFYKYK 298 (298)
T ss_pred ChHHHHHHhccccccccCccceecC
Confidence 99999999 8899999994
No 116
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.75 E-value=4.2e-18 Score=166.06 Aligned_cols=145 Identities=19% Similarity=0.135 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEECccc
Q 004892 30 IPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLA 109 (724)
Q Consensus 30 ~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a 109 (724)
.-.+.+|.++++.+++|+++|+|||++ ||.|+|+.... ...+.+ ..+.+++|||||++||.|
T Consensus 21 ~~~~~~l~~~l~~a~~d~~v~~vvl~~----~~~gg~~~~~~-------------~~~~~i-~~~~~~~kpVia~v~G~a 82 (177)
T cd07014 21 NVSGDTTAAQIRDARLDPKVKAIVLRV----NSPGGSVTASE-------------VIRAEL-AAARAAGKPVVASGGGNA 82 (177)
T ss_pred CcCHHHHHHHHHHHhcCCCceEEEEEe----eCCCcCHHHHH-------------HHHHHH-HHHHhCCCCEEEEECCch
Confidence 345789999999999999999999986 68898876532 122345 557889999999999999
Q ss_pred cchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhh--------hhccccc--HHHHHHHHHcCCCCCHHHHHHCCC
Q 004892 110 LGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ--------RLPRLVG--LSKAIEMMLLSKSITSEEGWKLGL 179 (724)
Q Consensus 110 ~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~--------~l~r~~G--~~~a~~l~ltg~~i~a~eA~~~Gl 179 (724)
.|+|+.|+++||+++++++++|+++.+..+..+...... .+++..| ....++++..|..++|++|++.||
T Consensus 83 ~g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GL 162 (177)
T cd07014 83 ASGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGL 162 (177)
T ss_pred hHHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCC
Confidence 999999999999999999999999988777443222222 3444445 888999999999999999999999
Q ss_pred cceecCcchHHHH
Q 004892 180 IDAVVTSEELLKV 192 (724)
Q Consensus 180 v~~vv~~~~l~~~ 192 (724)
||++.+.+++.+.
T Consensus 163 VD~v~~~~e~~~~ 175 (177)
T cd07014 163 VDSLGSFDDAVAK 175 (177)
T ss_pred cccCCCHHHHHHH
Confidence 9999998887653
No 117
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.75 E-value=9.8e-18 Score=171.74 Aligned_cols=189 Identities=19% Similarity=0.187 Sum_probs=138.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (724)
.||+|||+|.||.+||.+|.++||+|++|||++++..... ...| .....+..+++++|
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~----------~~~G------------a~~a~s~~eaa~~a 58 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELL----------AAAG------------ATVAASPAEAAAEA 58 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHH----------HHcC------------CcccCCHHHHHHhC
Confidence 4899999999999999999999999999999999843221 1222 11122333788999
Q ss_pred CEEEEcccCChHHHHHHHH--HHHhhCCCCcEEEecCCCCCHH--HHhcccCCCCCEEEEecCCCCCCCCe-------ee
Q 004892 389 DMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHVMPL-------LE 457 (724)
Q Consensus 389 DlVIeav~e~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~~~~r~ig~h~~~p~~~~~l-------ve 457 (724)
|+||.|||++.++...++. .+.+.+++++++++.++.-|.+ ++++.+.. .|.+|++.|..+.. +.
T Consensus 59 DvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~----~G~~~lDAPVsGg~~~A~~GtLt 134 (286)
T COG2084 59 DVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAA----KGLEFLDAPVSGGVPGAAAGTLT 134 (286)
T ss_pred CEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHh----cCCcEEecCccCCchhhhhCceE
Confidence 9999999988888877774 5888889999988644433322 34444332 26778776644432 33
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCeeEEEcCC-Cc---hhhhhhhhH----HHHHHHHHHHc-CCCHHHHHHHH-Hhc
Q 004892 458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGNC-TG---FAVNRAFFP----YSQSARLLVSL-GVDVFRIDSAI-RSF 525 (724)
Q Consensus 458 ii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-pG---~i~nRl~~~----~~~Ea~~l~~~-Gv~~~~ID~a~-~~~ 525 (724)
|+.|. +++.+++++++++.+|+.++++++. .| .++|.++.. .+.||+.+.+. |++++.+..++ .+.
T Consensus 135 imvGG--~~~~f~r~~pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~ 210 (286)
T COG2084 135 IMVGG--DAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGA 210 (286)
T ss_pred EEeCC--CHHHHHHHHHHHHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccc
Confidence 44433 7999999999999999999999875 22 366777543 33599999977 89999999999 443
No 118
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.71 E-value=6.5e-17 Score=158.80 Aligned_cols=150 Identities=25% Similarity=0.264 Sum_probs=118.0
Q ss_pred EEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEE-cCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHH
Q 004892 16 AIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLT-GNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI 94 (724)
Q Consensus 16 ~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (724)
++|.++. .++..+...+.+.++.+++++ ++.|+|. ..+ |+++.. ...++ +.|
T Consensus 2 ~vv~i~g----~I~~~~~~~l~~~l~~a~~~~-~~~vvl~InSp-----GG~v~~----------------~~~i~-~~l 54 (187)
T cd07020 2 YVLEING----AITPATADYLERAIDQAEEGG-ADALIIELDTP-----GGLLDS----------------TREIV-QAI 54 (187)
T ss_pred EEEEEee----EEChHHHHHHHHHHHHHHhCC-CCEEEEEEECC-----CCCHHH----------------HHHHH-HHH
Confidence 4566653 367778889999999998665 7877774 332 333321 12344 557
Q ss_pred hcCCCcEEEEEC---ccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCc--------------chhhhhcccccH-
Q 004892 95 EDCKKPIVAAVE---GLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGF--------------GGTQRLPRLVGL- 156 (724)
Q Consensus 95 ~~~~kp~Iaav~---G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~--------------g~~~~l~r~~G~- 156 (724)
..+||||||+|+ |+|.|+|+.|+++||+++++++++|+.+++..+..+.. +....+++..|.
T Consensus 55 ~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~ 134 (187)
T cd07020 55 LASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRN 134 (187)
T ss_pred HhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 889999999999 99999999999999999999999999999985544432 234578888887
Q ss_pred -HHHHHHHHcCCCCCHHHHHHCCCcceecCcc-hHHHH
Q 004892 157 -SKAIEMMLLSKSITSEEGWKLGLIDAVVTSE-ELLKV 192 (724)
Q Consensus 157 -~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~-~l~~~ 192 (724)
.++.+++++|+.++++||+++||||+|++++ ++...
T Consensus 135 ~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~~ 172 (187)
T cd07020 135 AEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLKK 172 (187)
T ss_pred HHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHHH
Confidence 6899999999999999999999999999886 56543
No 119
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.70 E-value=3.3e-17 Score=172.77 Aligned_cols=94 Identities=28% Similarity=0.378 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCCCCCCCH
Q 004892 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSR 698 (724)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~ 698 (724)
.++++.||++.+++|||++|+++|++ +++|||.++++|+|||+ |||+++|.+|++.+.++++.+++.++++|.|++
T Consensus 183 ~~Gf~~nRl~~~~~~ea~~~~~~gv~-~~~~iD~~~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~ 258 (288)
T PRK09260 183 FPGFVTSRISALVGNEAFYMLQEGVA-TAEDIDKAIRLGLNFPM---GPLELGDLVGLDTRLNNLKYLHETLGEKYRPAP 258 (288)
T ss_pred cccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhHHHHHHHHHHHHHHhCCCCCCCH
Confidence 37899999999999999999999998 99999999999999998 999999999999999999999998999999999
Q ss_pred HHHHHH-------HcCCCCCCCCCC
Q 004892 699 FLEERA-------TKGIPLSAPVSS 716 (724)
Q Consensus 699 ~l~~~~-------k~g~gfy~~~~~ 716 (724)
+|.+|+ |+|+|||+|++.
T Consensus 259 ~l~~~~~~g~~G~k~g~Gfy~y~~~ 283 (288)
T PRK09260 259 LLEKYVKAGRLGRKTGRGVYDYTNR 283 (288)
T ss_pred HHHHHHHCCCCccccCCEEEECCCC
Confidence 999999 789999999654
No 120
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.68 E-value=7.7e-17 Score=168.99 Aligned_cols=91 Identities=24% Similarity=0.376 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCC-CCCCC
Q 004892 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPS 697 (724)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~ 697 (724)
.++++.||++.+++|||++|+++|++ |++|||.+++.|+|||+ |||+++|.+|+|.++++++.+++.+++ +|.|+
T Consensus 188 ~pGfi~nRi~~~~~~Ea~~ll~eGv~-~~~dID~~~~~g~G~p~---Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~p~ 263 (286)
T PRK07819 188 RSGFVVNALLVPYLLSAIRMVESGFA-TAEDIDKAMVLGCAHPM---GPLRLSDLVGLDTVKAIADSMYEEFKEPLYAPP 263 (286)
T ss_pred CCChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhccHHHHHHHHHHHHHcCCCCCCCC
Confidence 47999999999999999999999998 89999999999999998 999999999999999999999998886 88999
Q ss_pred HHHHHHH-------HcCCCCCCC
Q 004892 698 RFLEERA-------TKGIPLSAP 713 (724)
Q Consensus 698 ~~l~~~~-------k~g~gfy~~ 713 (724)
++|++|+ |+|+|||+|
T Consensus 264 ~~l~~~v~~g~~G~k~g~GfY~y 286 (286)
T PRK07819 264 PLLLRMVEAGLLGKKSGRGFYTY 286 (286)
T ss_pred HHHHHHHHCCCCcccCCCEeccC
Confidence 9999999 789999998
No 121
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.68 E-value=1.1e-16 Score=168.32 Aligned_cols=92 Identities=26% Similarity=0.435 Sum_probs=87.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCC-CCCC
Q 004892 618 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKP 696 (724)
Q Consensus 618 ~~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p 696 (724)
-++++|.||++.+++|||++|+++|++ +++|||.++++|+|||+ |||+++|.+|+|.+.++++.+++.+++ +|+|
T Consensus 183 d~~g~i~~Ri~~~~~~ea~~~~~~gv~-~~~diD~~~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~ 258 (282)
T PRK05808 183 NAPGFVVNRILIPMINEAIFVLAEGVA-TAEDIDEGMKLGCNHPI---GPLALADLIGLDTCLAIMEVLYEGFGDSKYRP 258 (282)
T ss_pred CccChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCcCCC
Confidence 467999999999999999999999998 89999999999999998 999999999999999999999999885 8899
Q ss_pred CHHHHHHH-------HcCCCCCCC
Q 004892 697 SRFLEERA-------TKGIPLSAP 713 (724)
Q Consensus 697 ~~~l~~~~-------k~g~gfy~~ 713 (724)
+++|++|+ |+|+|||+|
T Consensus 259 ~~~l~~~~~~g~~G~k~g~Gfy~y 282 (282)
T PRK05808 259 CPLLRKMVAAGWLGRKTGRGFYDY 282 (282)
T ss_pred CHHHHHHHHCCCCccccCCcccCC
Confidence 99999999 789999998
No 122
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.68 E-value=3.5e-16 Score=165.33 Aligned_cols=187 Identities=19% Similarity=0.235 Sum_probs=134.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCC
Q 004892 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (724)
Q Consensus 310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 389 (724)
||+|||+|.||.+||..|+++|++|++||+++++++... +.|. ...++..+.+++||
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g~------------~~~~~~~~~~~~aD 57 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELL-----------AAGA------------VTAETARQVTEQAD 57 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCCC------------cccCCHHHHHhcCC
Confidence 599999999999999999999999999999998876542 1221 11122226678999
Q ss_pred EEEEcccCChHHHHHHHH--HHHhhCCCCcEEEecCCCCCHH---HHhcccCCCCCEEEEecCCCCCCC-------Ceee
Q 004892 390 MVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHVM-------PLLE 457 (724)
Q Consensus 390 lVIeav~e~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~~~r~ig~h~~~p~~~~-------~lve 457 (724)
+||+|+|++..++..++. .+.+.++++++|++ +|+.++. ++.+.+... ++||+++|..+ ..++
T Consensus 58 ivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd-~st~~~~~~~~l~~~l~~~----g~~~~~~pv~g~~~~a~~g~l~ 132 (291)
T TIGR01505 58 VIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVD-MSSISPIESKRFAKAVKEK----GIDYLDAPVSGGEIGAIEGTLS 132 (291)
T ss_pred EEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc----CCCEEecCCCCCHHHHhcCCEE
Confidence 999999987777666553 36667788888874 4444443 344444322 45555433221 2244
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCc---hhhhhhhhHH----HHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 004892 458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTG---FAVNRAFFPY----SQSARLLVSL-GVDVFRIDSAI-RSFG 526 (724)
Q Consensus 458 ii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~pG---~i~nRl~~~~----~~Ea~~l~~~-Gv~~~~ID~a~-~~~g 526 (724)
++.+. ++++++.++++++.+|+.++++++ .+| +++|+++.+. ++|++.+.+. |++++++.+++ .+.+
T Consensus 133 i~~gg--~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~ 209 (291)
T TIGR01505 133 IMVGG--DQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLA 209 (291)
T ss_pred EEecC--CHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcc
Confidence 55553 689999999999999999999975 555 4778887654 7899999876 89999999999 4443
No 123
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.67 E-value=1.1e-15 Score=161.88 Aligned_cols=188 Identities=17% Similarity=0.210 Sum_probs=136.2
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004892 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (724)
++||+|||+|.||.++|..+++.|++|++||++++..+... +.| +..+++. +.++
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~-----------~~g-------------~~~~~~~~e~~~ 57 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVI-----------AAG-------------AETASTAKAVAE 57 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCC-------------CeecCCHHHHHh
Confidence 35899999999999999999999999999999998866532 112 1223344 4568
Q ss_pred CCCEEEEcccCChHHHHHHH--HHHHhhCCCCcEEEecCCCCCHH---HHhcccCCCCCEEEEecCCCCCCC-------C
Q 004892 387 DVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHVM-------P 454 (724)
Q Consensus 387 ~aDlVIeav~e~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~~~r~ig~h~~~p~~~~-------~ 454 (724)
+||+||+|+|++..++..++ ..+.+.++++++|++ +|+.++. ++.+.+... +.||+++|..+ .
T Consensus 58 ~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid-~st~~~~~~~~l~~~~~~~----g~~~~d~pv~g~~~~a~~g 132 (296)
T PRK11559 58 QCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVID-MSSIAPLASREIAAALKAK----GIEMLDAPVSGGEPKAIDG 132 (296)
T ss_pred cCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEE-CCCCCHHHHHHHHHHHHHc----CCcEEEcCCCCCHHHHhhC
Confidence 99999999998877766554 346777888998874 4444443 344444322 56666655332 2
Q ss_pred eeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCchh---hhhhhhH----HHHHHHHHHHc-CCCHHHHHHHH-Hh
Q 004892 455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTGFA---VNRAFFP----YSQSARLLVSL-GVDVFRIDSAI-RS 524 (724)
Q Consensus 455 lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~pG~i---~nRl~~~----~~~Ea~~l~~~-Gv~~~~ID~a~-~~ 524 (724)
.++++.+. ++++++.++++++.+|+.++++++ .+|++ +|+++.+ .++|++.+.+. |+++++++.++ .+
T Consensus 133 ~l~i~~gg--~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~ 210 (296)
T PRK11559 133 TLSVMVGG--DKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGG 210 (296)
T ss_pred cEEEEECC--CHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 24455553 689999999999999999999964 56665 6776544 57899999876 89999999998 44
Q ss_pred cC
Q 004892 525 FG 526 (724)
Q Consensus 525 ~g 526 (724)
++
T Consensus 211 ~~ 212 (296)
T PRK11559 211 LA 212 (296)
T ss_pred cc
Confidence 43
No 124
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.67 E-value=1.1e-16 Score=165.59 Aligned_cols=94 Identities=24% Similarity=0.412 Sum_probs=88.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhC--CCCC
Q 004892 618 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYG--NFFK 695 (724)
Q Consensus 618 ~~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~--~~~~ 695 (724)
-+++||+||++.++++||++++.+|++ ++++||.+|+.|+|||+ |||+++|.+|+|..+++++.+.+.++ +.|.
T Consensus 183 D~pGFi~NRil~~~~~eA~~l~~eGva-~~e~ID~~~~~~~G~pm---Gpf~l~D~~GlD~~~~i~~~~~~~~~~~~~~~ 258 (307)
T COG1250 183 DVPGFIVNRLLAALLNEAIRLLEEGVA-TPEEIDAAMRQGLGLPM---GPFELADLIGLDVMLHIMKVLNETLGDDPYYR 258 (307)
T ss_pred CCCceehHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhccCCCc---cHHHHHHHHhHHHHHHHHHHHHHhcCCCcccc
Confidence 468999999999999999999999999 99999999999999998 99999999999999999999998887 3678
Q ss_pred CCHHHHHHH-------HcCCCCCCCCC
Q 004892 696 PSRFLEERA-------TKGIPLSAPVS 715 (724)
Q Consensus 696 p~~~l~~~~-------k~g~gfy~~~~ 715 (724)
|++++++|+ |+|+|||+|++
T Consensus 259 ~~~~~~~~v~~g~lG~Ksg~GfY~y~~ 285 (307)
T COG1250 259 PPPLLRKLVEAGRLGRKSGKGFYDYRG 285 (307)
T ss_pred ccHHHHHHHhcccccccCCCcceeccc
Confidence 899999998 89999999975
No 125
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.65 E-value=4.3e-16 Score=164.89 Aligned_cols=94 Identities=24% Similarity=0.370 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCC-CCCCC
Q 004892 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPS 697 (724)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~ 697 (724)
+++++.||++.+++|||++++++|++ +++|||.++++|+|||+ |||+++|.+|++++.++++.+++.+++ +|.|+
T Consensus 185 ~~g~i~nri~~~~~~ea~~~~~~gv~-~~~~iD~~~~~g~g~~~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~ 260 (295)
T PLN02545 185 YPGFIVNRILMPMINEAFYALYTGVA-SKEDIDTGMKLGTNHPM---GPLHLADFIGLDTCLSIMKVLHEGLGDSKYRPC 260 (295)
T ss_pred cccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCC---CHHHHHHHhchHHHHHHHHHHHHHcCCCcCCCC
Confidence 46899999999999999999999998 89999999999999998 999999999999999999999998886 78999
Q ss_pred HHHHHHH-------HcCCCCCCCCCC
Q 004892 698 RFLEERA-------TKGIPLSAPVSS 716 (724)
Q Consensus 698 ~~l~~~~-------k~g~gfy~~~~~ 716 (724)
++|++|+ |+|+|||+|++.
T Consensus 261 ~~l~~~~~~g~~G~k~g~Gfy~y~~~ 286 (295)
T PLN02545 261 PLLVQYVDAGRLGRKSGRGVYHYDGK 286 (295)
T ss_pred HHHHHHHHCCCCcccCCCeeeECCCC
Confidence 9999999 789999999554
No 126
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.63 E-value=6.7e-16 Score=162.65 Aligned_cols=92 Identities=17% Similarity=0.284 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCCCC--CC
Q 004892 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFF--KP 696 (724)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~--~p 696 (724)
.++++.||++.+++|||++++++|++ |++|||.++..|+|||+ |||+++|.+|+|.+.++++.+++.+++.+ .|
T Consensus 187 ~pgfi~nRi~~~~~~ea~~l~~~g~a-~~~~iD~a~~~~~g~~~---Gp~~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~ 262 (287)
T PRK08293 187 QPGYILNSLLVPFLSAALALWAKGVA-DPETIDKTWMIATGAPM---GPFGILDIVGLDTAYNITSNWAEATDDENAKKA 262 (287)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCc---CHHHHHHHhchHHHHHHHHHHHHHhCCcccccc
Confidence 57899999999999999999999999 99999999999999998 99999999999999999999999888743 48
Q ss_pred CHHHHHHH-------HcCCCCCCCC
Q 004892 697 SRFLEERA-------TKGIPLSAPV 714 (724)
Q Consensus 697 ~~~l~~~~-------k~g~gfy~~~ 714 (724)
+++|++|+ |+|+|||+|+
T Consensus 263 ~~~l~~~v~~g~~G~k~g~Gfy~y~ 287 (287)
T PRK08293 263 AALLKEYIDKGKLGVATGEGFYNYP 287 (287)
T ss_pred hHHHHHHHHCCCCcccCCCccccCc
Confidence 89999999 7899999994
No 127
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.62 E-value=1.1e-15 Score=161.45 Aligned_cols=94 Identities=23% Similarity=0.323 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCC-CCCCC
Q 004892 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPS 697 (724)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~ 697 (724)
.++++.||++.+++||++.++++|++ ++++||.++++|+|||+ |||+++|.+|++++.++++.+++.+++ +|+|+
T Consensus 185 ~pg~i~nRl~~~~~~ea~~~~~~g~~-~~~~iD~~~~~g~g~~~---GP~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~p~ 260 (292)
T PRK07530 185 FPAFIVNRILLPMINEAIYTLYEGVG-SVEAIDTAMKLGANHPM---GPLELADFIGLDTCLSIMQVLHDGLADSKYRPC 260 (292)
T ss_pred cCChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCcCCCC
Confidence 36899999999999999999999998 99999999999999997 999999999999999999999998876 79999
Q ss_pred HHHHHHH-------HcCCCCCCCCCC
Q 004892 698 RFLEERA-------TKGIPLSAPVSS 716 (724)
Q Consensus 698 ~~l~~~~-------k~g~gfy~~~~~ 716 (724)
++|++|+ |+|+|||+|++.
T Consensus 261 ~~l~~~v~~g~~G~k~g~Gfy~y~~~ 286 (292)
T PRK07530 261 PLLVKYVEAGWLGRKTGRGFYDYRGE 286 (292)
T ss_pred HHHHHHHHCCCCccccCCEeeeCCCC
Confidence 9999999 899999999544
No 128
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.62 E-value=6.7e-15 Score=154.35 Aligned_cols=153 Identities=20% Similarity=0.225 Sum_probs=119.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCC
Q 004892 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (724)
Q Consensus 310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 389 (724)
||+|||+|.||+++|..|.++|++|++||++++.++.+.+ .|.++ ..+++.+.+++||
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~-----------~g~~~-----------~~~~~~~~~~~aD 59 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIE-----------RGLVD-----------EASTDLSLLKDCD 59 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------CCCcc-----------cccCCHhHhcCCC
Confidence 7999999999999999999999999999999988776432 22211 1233445678999
Q ss_pred EEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCC------------CCCeee
Q 004892 390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH------------VMPLLE 457 (724)
Q Consensus 390 lVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~------------~~~lve 457 (724)
+||+|+| .....++++++.+.++++++|+ ++++.....+........+|++.||+.++. .++...
T Consensus 60 lVilavp--~~~~~~~~~~l~~~l~~~~ii~-d~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~ 136 (279)
T PRK07417 60 LVILALP--IGLLLPPSEQLIPALPPEAIVT-DVGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWV 136 (279)
T ss_pred EEEEcCC--HHHHHHHHHHHHHhCCCCcEEE-eCcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEE
Confidence 9999999 5566678899999898888775 455555555554444455799999965442 345566
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004892 458 IVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (724)
Q Consensus 458 ii~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 487 (724)
+++++.++++.++.+.++++.+|+.++++.
T Consensus 137 l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~ 166 (279)
T PRK07417 137 LTPTENTDLNALAIVEELAVSLGSKIYTAD 166 (279)
T ss_pred EccCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 888999999999999999999999998875
No 129
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.61 E-value=1.2e-15 Score=161.20 Aligned_cols=91 Identities=22% Similarity=0.240 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCC-CCCCC
Q 004892 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPS 697 (724)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~ 697 (724)
.++++.||++.+++|||++++++|++ |++|||++++.++|||+ |||+++|.+|+|++.++++.+++.+++ +|.|+
T Consensus 187 ~pgfv~nRl~~~~~~ea~~~~~~g~a-~~~~iD~~~~~~~g~~~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~ 262 (291)
T PRK06035 187 VPGFFTTRFIEGWLLEAIRSFEIGIA-TIKDIDEMCKLAFGFPM---GPFELMDIIGIDTVYHIAEYLYEETGDPQFIPP 262 (291)
T ss_pred CCCeeHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhcCCCcc---CHHHHHHHhhHHHHHHHHHHHHHHcCCCcCCcc
Confidence 47899999999999999999999999 99999999999999998 999999999999999999999998886 78999
Q ss_pred HHHHHHH-------Hc-----CCCCCCC
Q 004892 698 RFLEERA-------TK-----GIPLSAP 713 (724)
Q Consensus 698 ~~l~~~~-------k~-----g~gfy~~ 713 (724)
++|++|+ |+ |+|||+|
T Consensus 263 ~~l~~~v~~g~~G~k~~~~~~g~Gfy~y 290 (291)
T PRK06035 263 NSLKQMVLNGYVGDKKVKYGSKGGWFDY 290 (291)
T ss_pred HHHHHHHHCCCCcCCCCCCCCCceeeec
Confidence 9999999 78 8999998
No 130
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.60 E-value=2.6e-15 Score=159.09 Aligned_cols=96 Identities=23% Similarity=0.288 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCC-CCCCCH
Q 004892 620 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPSR 698 (724)
Q Consensus 620 ~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~ 698 (724)
+++++||++.++++|++.++++|++ ++++||.++..|+|||++..|||+++|.+|++++++.++.+++.+++ +|.|++
T Consensus 182 ~Gfi~nri~~~~l~EAl~l~e~g~~-~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~p~~ 260 (314)
T PRK08269 182 PGYIVPRIQALAMNEAARMVEEGVA-SAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDILYYASRYLAGEIGPDRFAPPA 260 (314)
T ss_pred CCcchHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCCH
Confidence 4789999999999999999999998 99999999999999999999999999999999999999999988887 899999
Q ss_pred HHHHHH-------HcCCCCCCCCCC
Q 004892 699 FLEERA-------TKGIPLSAPVSS 716 (724)
Q Consensus 699 ~l~~~~-------k~g~gfy~~~~~ 716 (724)
+|++|+ |+|+|||+|++.
T Consensus 261 ~l~~~v~~g~~G~ksG~GfY~y~~~ 285 (314)
T PRK08269 261 IVVRNMEEGRDGLRTGAGFYDYAGV 285 (314)
T ss_pred HHHHHHHCCCCcccCCCcceeCCCC
Confidence 999999 889999999553
No 131
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.58 E-value=1.4e-14 Score=145.04 Aligned_cols=156 Identities=18% Similarity=0.193 Sum_probs=114.3
Q ss_pred cEEEEEeCCC--C-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHH
Q 004892 14 GVAIITLINP--P-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (724)
Q Consensus 14 ~v~~i~l~~p--~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (724)
+|++|.++.| + .+..+...+.+|.++|+.+..||++++|||+ .||+|+|+..+.. ..+.+
T Consensus 1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~~-------------~~~~l 63 (211)
T cd07019 1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASEV-------------IRAEL 63 (211)
T ss_pred CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHHH-------------HHHHH
Confidence 4677777766 2 2444455789999999999999999999998 7999999977532 12334
Q ss_pred HHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCcc----------CCcchhhhhcccccH----
Q 004892 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVI----------PGFGGTQRLPRLVGL---- 156 (724)
Q Consensus 91 ~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~----------P~~g~~~~l~r~~G~---- 156 (724)
+.+..++||+||+++|.|.|+|+.|+++||++++++++.|+. +|+. +..|..+.+.+..|.
T Consensus 64 -~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~gs----iGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~ 138 (211)
T cd07019 64 -AAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTGS----IGIFGVITTVENSLDSIGVHTDGVSTSPLADVS 138 (211)
T ss_pred -HHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEEE----eEEEEEcCCHHHHHHhcCCceEEEEecCcccCC
Confidence 557889999999999999999999999999999999999873 3332 322322222222110
Q ss_pred -----------------------------------HHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHH
Q 004892 157 -----------------------------------SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191 (724)
Q Consensus 157 -----------------------------------~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~ 191 (724)
....+-+..|..+++++|++.||||++-..++..+
T Consensus 139 ~~~~~s~e~r~~~~~~ld~~~~~f~~~Va~~R~~~~~~l~~~~~~~~~~~~~A~~~GLvD~i~~~~~~~~ 208 (211)
T cd07019 139 ITRALPPEAQLGLQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVA 208 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHhcCCcEEeHHHHHHcCCcccCCCHHHHHH
Confidence 11122245688999999999999999987666544
No 132
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.57 E-value=1.6e-13 Score=149.23 Aligned_cols=171 Identities=19% Similarity=0.204 Sum_probs=124.3
Q ss_pred CcceEEEEc-CCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc
Q 004892 307 GVRKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (724)
Q Consensus 307 ~~~kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 385 (724)
.+++|+||| +|.||+++|..|.++|++|++||+++.. . . .+.+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~--~-------------------~---------------~~~~ 140 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWD--R-------------------A---------------EDIL 140 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcch--h-------------------H---------------HHHH
Confidence 568999998 9999999999999999999999986320 0 0 0235
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHhcccCCCCCEEEEecCCCCCCCCeee--EecC
Q 004892 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE--IVRT 461 (724)
Q Consensus 386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lve--ii~~ 461 (724)
++||+||+|+| .....++++++.+ ++++++|++++|. .++..+..... .+|+|.||+.++....+.. ++..
T Consensus 141 ~~aDlVilavP--~~~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~~~~~~~vv~~ 215 (374)
T PRK11199 141 ADAGMVIVSVP--IHLTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVGSLAKQVVVVC 215 (374)
T ss_pred hcCCEEEEeCc--HHHHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCCCCCCcccCCCEEEEc
Confidence 68999999999 4456788899988 8999999988875 34556655433 3699999998876654433 4556
Q ss_pred CCCCHHHHHHHHHHHHHcCCeeEEEc-CCCchhhhhh--hhHH--HHHHHHHHHcCCCHHHH
Q 004892 462 ERTSAQVILDLMTVGKIIKKVPVVVG-NCTGFAVNRA--FFPY--SQSARLLVSLGVDVFRI 518 (724)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lGk~~v~v~-d~pG~i~nRl--~~~~--~~Ea~~l~~~Gv~~~~I 518 (724)
+.+++++++.+.++++.+|..++.+. +.+..++-.+ +-.+ +.++..+.+.+.+.+++
T Consensus 216 ~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~al~~~l~~~~~~~~~~ 277 (374)
T PRK11199 216 DGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAKENVDLEQL 277 (374)
T ss_pred CCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 67788999999999999999999985 3444333222 1112 22455555556665553
No 133
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.57 E-value=1e-13 Score=144.58 Aligned_cols=185 Identities=19% Similarity=0.126 Sum_probs=136.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC----cEEEE-eCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNI----YVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~----~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 382 (724)
+||+|||+|.||.+|+..|.++|+ +|++| |+++++.+.+. +.| +...++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~-----------~~g-------------~~~~~~~~ 56 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQ-----------SLG-------------VKTAASNT 56 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHH-----------HcC-------------CEEeCChH
Confidence 379999999999999999999998 89999 99988765432 112 2223333
Q ss_pred cCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEe-cC
Q 004892 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RT 461 (724)
Q Consensus 383 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii-~~ 461 (724)
+.+++||+||.|++ ++...+++.++.+.+.++++|+|.+++.++..+....... +++..+|..|......+.++ .+
T Consensus 57 e~~~~aDvVil~v~--~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~~~~~~l~~~ 133 (266)
T PLN02688 57 EVVKSSDVIILAVK--PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVGEAASVMSLG 133 (266)
T ss_pred HHHhcCCEEEEEEC--cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHhCceEEEEeC
Confidence 55789999999996 6678888888888888889888988999999888766544 78888888887776666644 57
Q ss_pred CCCCHHHHHHHHHHHHHcCCeeEEEcCC-----Cch--hhhhhhhHHHHHHH--HHHHcCCCHHHHHHHH
Q 004892 462 ERTSAQVILDLMTVGKIIKKVPVVVGNC-----TGF--AVNRAFFPYSQSAR--LLVSLGVDVFRIDSAI 522 (724)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lGk~~v~v~d~-----pG~--i~nRl~~~~~~Ea~--~l~~~Gv~~~~ID~a~ 522 (724)
..++++.++.++++++.+|+ ++++++. -|. -...+++.++ +++ ...+.|+++++..+++
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~-~~~~~e~~~d~~~~~~g~g~a~~~~~~-~a~~ea~~~~Gl~~~~a~~~~ 201 (266)
T PLN02688 134 PAATADDRDLVATLFGAVGK-IWVVDEKLLDAVTGLSGSGPAYIFLAI-EALADGGVAAGLPRDVALSLA 201 (266)
T ss_pred CCCCHHHHHHHHHHHHhCCC-EEEeCHHHcchhHhhhcCHHHHHHHHH-HHHHHHHHHcCCCHHHHHHHH
Confidence 77899999999999999999 7776430 010 1112222222 222 1445699999988877
No 134
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.55 E-value=1.1e-13 Score=138.87 Aligned_cols=186 Identities=19% Similarity=0.198 Sum_probs=130.0
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004892 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (724)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 386 (724)
+.++|++||+|.||++|+.+|.++||.|++|||+.++.+... +.|. -...+..|.++
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~-----------~~Ga------------~v~~sPaeVae 90 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQ-----------EAGA------------RVANSPAEVAE 90 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHH-----------Hhch------------hhhCCHHHHHh
Confidence 468999999999999999999999999999999999877643 2231 11233347789
Q ss_pred CCCEEEEcccCChHHHHHHHHH--HHhhCCCCcEEEecCCCCCH---HHHhcccCCCCCEEEEecCCCC--------CCC
Q 004892 387 DVDMVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDL---NIVGEKTSSQDRIIGAHFFSPA--------HVM 453 (724)
Q Consensus 387 ~aDlVIeav~e~~~~k~~v~~~--l~~~~~~~~ii~s~ts~~~~---~~~~~~~~~~~r~ig~h~~~p~--------~~~ 453 (724)
+||+||.+||+..+++..++.. +.+.++++.......|++.+ .++++..... +..|.+.| ..+
T Consensus 91 ~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~----~~~~vDAPVSGg~~~A~~G 166 (327)
T KOG0409|consen 91 DSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNK----GGRFVDAPVSGGVKGAEEG 166 (327)
T ss_pred hcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhC----CCeEEeccccCCchhhhcC
Confidence 9999999999888888877764 33334444433223333333 3666655432 23333333 222
Q ss_pred CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCC-Cc---hhhhhhhhHH----HHHHHHHHHc-CCCHHHHHHHH
Q 004892 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC-TG---FAVNRAFFPY----SQSARLLVSL-GVDVFRIDSAI 522 (724)
Q Consensus 454 ~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-pG---~i~nRl~~~~----~~Ea~~l~~~-Gv~~~~ID~a~ 522 (724)
. +.+..+ .+++.++++.++++.+||+.+.++.+ -| -+.|.++.+. +.|++.+.+. |+++..+-.++
T Consensus 167 ~-Ltimag--Gde~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eil 241 (327)
T KOG0409|consen 167 T-LTIMAG--GDEALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEIL 241 (327)
T ss_pred e-EEEEec--CcHHHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 334444 48999999999999999999999653 23 4667775433 2499988866 99999988888
No 135
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.55 E-value=1.2e-14 Score=155.22 Aligned_cols=97 Identities=22% Similarity=0.194 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCCCCCCCHH
Q 004892 620 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRF 699 (724)
Q Consensus 620 ~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~ 699 (724)
++++.||++.++++||+.++++|++ +++++|.++..|+|||++..|||+++|.+|++++.+++..+++.++++|.|+++
T Consensus 183 ~G~i~nr~~~~~~~Ea~~l~~~g~~-~~~~id~~~~~~~g~~~~~~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~~ 261 (311)
T PRK06130 183 PGFIANRIQHALAREAISLLEKGVA-SAEDIDEVVKWSLGIRLALTGPLEQRDMNGLDVHLAVASYLYQDLENRTTPSPL 261 (311)
T ss_pred CCcHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCccCCCHHHHhhhhccchHHHHHHHHHHhcCCcCCCCHH
Confidence 5789999999999999999999999 899999999999999999999999999999999999999999989889999999
Q ss_pred HHHHH-------HcCCCCCCCCCCC
Q 004892 700 LEERA-------TKGIPLSAPVSSS 717 (724)
Q Consensus 700 l~~~~-------k~g~gfy~~~~~~ 717 (724)
|++|+ |+|+|||+|++..
T Consensus 262 l~~~~~~g~~G~~~g~gfy~y~~~~ 286 (311)
T PRK06130 262 LEEKVEAGELGAKSGQGFYAWPPER 286 (311)
T ss_pred HHHHHHcCCccccCCCcCccCCCCC
Confidence 99999 8999999996554
No 136
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.53 E-value=4.5e-14 Score=149.22 Aligned_cols=186 Identities=15% Similarity=0.131 Sum_probs=124.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004892 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (724)
|+||+|||+|.||.+||..|+++|++|++||+++++++...+ .| +..+++. +.++
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~-----------~g-------------~~~~~s~~~~~~ 56 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVD-----------KG-------------ATPAASPAQAAA 56 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------cC-------------CcccCCHHHHHh
Confidence 358999999999999999999999999999999998765421 12 1122333 5678
Q ss_pred CCCEEEEcccCChHHHHHHHH--HHHhhCCCCcEEEecCCCCCHH---HHhcccC-CCCCEEEEecCCCC---CCCCeee
Q 004892 387 DVDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN---IVGEKTS-SQDRIIGAHFFSPA---HVMPLLE 457 (724)
Q Consensus 387 ~aDlVIeav~e~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~-~~~r~ig~h~~~p~---~~~~lve 457 (724)
+||+||.|+|++..++..++. .+.+.++++++++. +|+.++. ++...+. +..+|+.......+ ..+.++-
T Consensus 57 ~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid-~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~ 135 (296)
T PRK15461 57 GAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVID-MSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLL 135 (296)
T ss_pred cCCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEE
Confidence 999999999977666544442 35666778887754 4554443 3333332 22233322111111 1222333
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc-----hhhhhhh----hHHHHHHHHHHHc-CCCHHHHHHHH
Q 004892 458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG-----FAVNRAF----FPYSQSARLLVSL-GVDVFRIDSAI 522 (724)
Q Consensus 458 ii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG-----~i~nRl~----~~~~~Ea~~l~~~-Gv~~~~ID~a~ 522 (724)
++.| +++++++++++++.+|+.++++++ +| .++|.++ ...+.|++.+.+. |++++.+-.++
T Consensus 136 ~~gg---~~~~~~~~~p~l~~~g~~~~~~g~-~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l 206 (296)
T PRK15461 136 LAGG---TAEQVERATPILMAMGNELINAGG-PGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVM 206 (296)
T ss_pred EECC---CHHHHHHHHHHHHHHcCCeEeeCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3333 789999999999999999999886 33 2344432 3445699988866 89999977777
No 137
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.53 E-value=1.8e-14 Score=168.98 Aligned_cols=92 Identities=24% Similarity=0.280 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCCCCCCCH
Q 004892 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSR 698 (724)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~ 698 (724)
++++|.||++.+++|||++++++|+ +++|||.+++ ++|||+ |||+++|.+|+|.++++++.+++.++++|.|++
T Consensus 491 ~pGfi~nRl~~~~~~EA~~lv~eGv--~~~dID~a~~-~~G~p~---GPf~~~D~~Gld~~~~i~~~l~~~~~~~~~~~~ 564 (708)
T PRK11154 491 GAGFYVNRILAPYINEAARLLLEGE--PIEHIDAALV-KFGFPV---GPITLLDEVGIDVGTKIIPILEAALGERFSAPA 564 (708)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHH-HcCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCCCCCH
Confidence 5799999999999999999999997 6999999998 899998 999999999999999999999998988999999
Q ss_pred HHHHHH-------HcCCCCCCCCCC
Q 004892 699 FLEERA-------TKGIPLSAPVSS 716 (724)
Q Consensus 699 ~l~~~~-------k~g~gfy~~~~~ 716 (724)
++++|+ |+|+|||+|++.
T Consensus 565 ~l~~~v~~g~~G~k~g~GfY~y~~~ 589 (708)
T PRK11154 565 AFDKLLNDDRKGRKNGRGFYLYGQK 589 (708)
T ss_pred HHHHHHHCCCCcccCCceEEECCCC
Confidence 999999 889999999643
No 138
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.52 E-value=2.3e-14 Score=167.52 Aligned_cols=92 Identities=25% Similarity=0.289 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCCCCCCCH
Q 004892 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSR 698 (724)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~ 698 (724)
++++|.||++.+++|||++++++|+ +++|||.++. ++|||+ |||+++|.+|+|+++++++.+++.++++|.|++
T Consensus 486 ~pGfi~nRl~~~~~~Ea~~l~~~G~--~~~dID~a~~-~~G~p~---GPf~l~D~vGld~~~~i~~~l~~~~~~~~~~~~ 559 (699)
T TIGR02440 486 KAGFYVNRILAPYMNEAARLLLEGE--PVEHIDKALV-KFGFPV---GPITLLDEVGIDVGAKISPILEAELGERFKAPA 559 (699)
T ss_pred ccchHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHH-HcCCCc---CHHHHHHHhchHHHHHHHHHHHHhcCCCCCCcH
Confidence 5799999999999999999999995 7999999997 999999 999999999999999999999999999999999
Q ss_pred HHHHHH-------HcCCCCCCCCCC
Q 004892 699 FLEERA-------TKGIPLSAPVSS 716 (724)
Q Consensus 699 ~l~~~~-------k~g~gfy~~~~~ 716 (724)
+|++|+ |+|+|||+|++.
T Consensus 560 ~l~~~v~~G~lG~ksg~GfY~y~~~ 584 (699)
T TIGR02440 560 VFDKLLSDDRKGRKNGKGFYLYGAA 584 (699)
T ss_pred HHHHHHHCCCCcccCCcEEEeCCCC
Confidence 999999 889999999643
No 139
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.50 E-value=2.8e-14 Score=137.24 Aligned_cols=148 Identities=18% Similarity=0.142 Sum_probs=100.9
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004892 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (724)
|+||+|||+|.||.+||.+|+++||+|++|||++++.++..+ . .....++. +.++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~-----------~-------------g~~~~~s~~e~~~ 56 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAE-----------A-------------GAEVADSPAEAAE 56 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHH-----------T-------------TEEEESSHHHHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHH-----------h-------------hhhhhhhhhhHhh
Confidence 579999999999999999999999999999999998777532 1 23444555 6678
Q ss_pred CCCEEEEcccCChHHHHHHHHH--HHhhCCCCcEEEecCCCCCHH---HHhcccCCCCCEEEEecCCCCC--------CC
Q 004892 387 DVDMVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAH--------VM 453 (724)
Q Consensus 387 ~aDlVIeav~e~~~~k~~v~~~--l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~~~r~ig~h~~~p~~--------~~ 453 (724)
+||+||.|+|++.+ .++++.. +.+.+.++.+|+. +|+.+++ ++++.+... |.||.+.|- .+
T Consensus 57 ~~dvvi~~v~~~~~-v~~v~~~~~i~~~l~~g~iiid-~sT~~p~~~~~~~~~~~~~----g~~~vdapV~Gg~~~a~~g 130 (163)
T PF03446_consen 57 QADVVILCVPDDDA-VEAVLFGENILAGLRPGKIIID-MSTISPETSRELAERLAAK----GVRYVDAPVSGGPPGAEEG 130 (163)
T ss_dssp HBSEEEE-SSSHHH-HHHHHHCTTHGGGS-TTEEEEE--SS--HHHHHHHHHHHHHT----TEEEEEEEEESHHHHHHHT
T ss_pred cccceEeecccchh-hhhhhhhhHHhhccccceEEEe-cCCcchhhhhhhhhhhhhc----cceeeeeeeeccccccccc
Confidence 99999999996555 4566666 8888899998874 4444443 344443222 355554332 23
Q ss_pred CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEE-EcC
Q 004892 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVV-VGN 488 (724)
Q Consensus 454 ~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~-v~d 488 (724)
.+.-++.| +++++++++++++.+|+++++ +++
T Consensus 131 ~l~~~~gG---~~~~~~~~~~~l~~~~~~v~~~~G~ 163 (163)
T PF03446_consen 131 TLTIMVGG---DEEAFERVRPLLEAMGKNVYHYVGP 163 (163)
T ss_dssp TEEEEEES----HHHHHHHHHHHHHHEEEEEEE-ES
T ss_pred ceEEEccC---CHHHHHHHHHHHHHHhCCceeeeCc
Confidence 44555565 589999999999999998884 354
No 140
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.50 E-value=9.6e-13 Score=137.39 Aligned_cols=188 Identities=18% Similarity=0.182 Sum_probs=136.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCC---CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-c
Q 004892 308 VRKVAVIGGGLMGSGIATAHILNN---IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~G---~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (724)
|+||+|||+|.||.+++..+.++| ++|++||++++..+...+.+ | +..+++. +
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~----------g-------------~~~~~~~~~ 58 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY----------G-------------VRAATDNQE 58 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc----------C-------------CeecCChHH
Confidence 468999999999999999999999 78999999998766543210 1 1122333 4
Q ss_pred CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeee-EecCC
Q 004892 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTE 462 (724)
Q Consensus 384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lve-ii~~~ 462 (724)
.+.+||+||.|+| ....+++++++.+.+ +++|+|.+++++...+...++...+++.+||..|......+. ++++.
T Consensus 59 ~~~~advVil~v~--~~~~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~ 134 (267)
T PRK11880 59 AAQEADVVVLAVK--PQVMEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANA 134 (267)
T ss_pred HHhcCCEEEEEcC--HHHHHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCC
Confidence 5688999999998 777888888888776 467778888999988887776566899999988877666665 45677
Q ss_pred CCCHHHHHHHHHHHHHcCCeeEEEcC-CC-chh-hh----hhhhHHHHHHHHH-HHcCCCHHHHHHHH
Q 004892 463 RTSAQVILDLMTVGKIIKKVPVVVGN-CT-GFA-VN----RAFFPYSQSARLL-VSLGVDVFRIDSAI 522 (724)
Q Consensus 463 ~t~~e~~~~~~~l~~~lGk~~v~v~d-~p-G~i-~n----Rl~~~~~~Ea~~l-~~~Gv~~~~ID~a~ 522 (724)
.++++..+.++.+++.+|..+++..+ .. ... .. -+++.++...... .+.|+++++...++
T Consensus 135 ~~~~~~~~~v~~l~~~lG~~~~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~ 202 (267)
T PRK11880 135 LVSAEDRELVENLLSAFGKVVWVDDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLA 202 (267)
T ss_pred CCCHHHHHHHHHHHHhCCeEEEECChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 78999999999999999975544322 11 111 11 1222333333333 34689888877666
No 141
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.48 E-value=1.4e-12 Score=135.63 Aligned_cols=153 Identities=16% Similarity=0.222 Sum_probs=126.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC----cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-c
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (724)
+||+|||+|+||.+|+..|.++|+ +|+++|+++++++.+.+. .| +..+++. +
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~----------~g-------------~~~~~~~~e 59 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK----------YG-------------ITITTNNNE 59 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh----------cC-------------cEEeCCcHH
Confidence 379999999999999999999885 699999999886654221 11 1223333 4
Q ss_pred CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEe-cCC
Q 004892 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTE 462 (724)
Q Consensus 384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii-~~~ 462 (724)
.+.+||+||.||+ ++...++++++.+.++++++|+|...++++..+...+....+++...|+.|...+..+..+ +++
T Consensus 60 ~~~~aDiIiLavk--P~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~ 137 (272)
T PRK12491 60 VANSADILILSIK--PDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNE 137 (272)
T ss_pred HHhhCCEEEEEeC--hHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCC
Confidence 5789999999999 6888899999998888899999999999999999988766689999999999888887766 567
Q ss_pred CCCHHHHHHHHHHHHHcCCeeEEEc
Q 004892 463 RTSAQVILDLMTVGKIIKKVPVVVG 487 (724)
Q Consensus 463 ~t~~e~~~~~~~l~~~lGk~~v~v~ 487 (724)
..+++..+.+..++..+|+.. ++.
T Consensus 138 ~~~~~~~~~v~~lf~~~G~~~-~~~ 161 (272)
T PRK12491 138 MVTEKDIKEVLNIFNIFGQTE-VVN 161 (272)
T ss_pred CCCHHHHHHHHHHHHcCCCEE-EEc
Confidence 778999999999999999974 443
No 142
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.47 E-value=7.9e-13 Score=143.49 Aligned_cols=221 Identities=16% Similarity=0.095 Sum_probs=143.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (724)
++|+|||+|.||++||..|.++|++|.+|+++++..+.... ...+..+ ..++++ +.+++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a---------~~~~~~~-----------~~~~~~~~~~~~ 60 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARA---------LGFGVID-----------ELAADLQRAAAE 60 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHH---------hcCCCCc-----------ccccCHHHHhcC
Confidence 47999999999999999999999999999998876443211 1112111 112333 45789
Q ss_pred CCEEEEcccCChHHHHHHHHHHHh-hCCCCcEEEecCCCC--CHHHHhcccCCCCCEEEEecCCCC------------CC
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPA------------HV 452 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~-~~~~~~ii~s~ts~~--~~~~~~~~~~~~~r~ig~h~~~p~------------~~ 452 (724)
||+||+|+| ++...++++++.+ .++++++|++.+|.. .+..+........+|++.||+... ..
T Consensus 61 aDlVilavP--~~~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~ 138 (359)
T PRK06545 61 ADLIVLAVP--VDATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFE 138 (359)
T ss_pred CCEEEEeCC--HHHHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHC
Confidence 999999999 5677899999987 478888886655543 233444444556789999986433 12
Q ss_pred CCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEE-cCCCchhhhhhh--hHHHHHHHHHHHcCCCHHHHHHHHHhcCCC-
Q 004892 453 MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAF--FPYSQSARLLVSLGVDVFRIDSAIRSFGLP- 528 (724)
Q Consensus 453 ~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v-~d~pG~i~nRl~--~~~~~Ea~~l~~~Gv~~~~ID~a~~~~g~~- 528 (724)
+...-+++++.++++.++.++++++.+|..++++ .+.+..++..+. -.++.+++ ....+.+..+.-.. .+-||.
T Consensus 139 g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~al-~~~~~~~~~~~~~l-a~~gfrd 216 (359)
T PRK06545 139 NAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILASSL-AARLAGEHPLALRL-AAGGFRD 216 (359)
T ss_pred CCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHHHH-HHhhccCchHHHhh-hcccccC
Confidence 3335578888899999999999999999999988 455666666552 34555544 22223222222222 222332
Q ss_pred ------ccHHHHHHhhchH--HHHHHHHHHHHh
Q 004892 529 ------IGPFQLLDLAGYG--VAAATSKEFDKA 553 (724)
Q Consensus 529 ------~Gp~~~~D~~Gld--~~~~~~~~l~~~ 553 (724)
.-|-.|.|.+--. .+...++.+...
T Consensus 217 ~tRia~~~p~~w~di~~~N~~~~~~~l~~~~~~ 249 (359)
T PRK06545 217 ITRIASSDPGMWRDILESNAEALLDALDEWIED 249 (359)
T ss_pred CccccCCCHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2677777776432 233444444433
No 143
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.47 E-value=1.1e-12 Score=137.69 Aligned_cols=188 Identities=14% Similarity=0.128 Sum_probs=133.8
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCC----CcEEEEeCCHH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc
Q 004892 308 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~G----~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (724)
.+||+|||+|.||.+|+..|.++| ++|+++||+++ .++.... +.| +..+.+.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~----------~~g-------------~~~~~~~ 59 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQ----------KYG-------------VKGTHNK 59 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHH----------hcC-------------ceEeCCH
Confidence 458999999999999999999998 78999999764 4343211 001 2223333
Q ss_pred -cCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeE-ec
Q 004892 383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEI-VR 460 (724)
Q Consensus 383 -~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lvei-i~ 460 (724)
+.+++||+||.||+ ++...+++.++.+.+.++++|+|..++++++.+.........+++.||..|.....-+.+ ++
T Consensus 60 ~e~~~~aDvVilav~--p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~ 137 (279)
T PRK07679 60 KELLTDANILFLAMK--PKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAISP 137 (279)
T ss_pred HHHHhcCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEee
Confidence 45689999999999 777778888888888888899988899999888887765557999999766555444444 46
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeeEEEcCCC-----chhh--hhhhhHHHHHHHH--HHHcCCCHHHHHHHH
Q 004892 461 TERTSAQVILDLMTVGKIIKKVPVVVGNCT-----GFAV--NRAFFPYSQSARL--LVSLGVDVFRIDSAI 522 (724)
Q Consensus 461 ~~~t~~e~~~~~~~l~~~lGk~~v~v~d~p-----G~i~--nRl~~~~~~Ea~~--l~~~Gv~~~~ID~a~ 522 (724)
++..+++..+.+++++..+|+..+ +.+.- |... ..+ ..++.|++. ..+.|+++++..+++
T Consensus 138 ~~~~~~~~~~~v~~l~~~~G~~~~-v~e~~~~~~~a~~Gsgpa~-~~~~~eal~e~~~~~Gl~~~~a~~~~ 206 (279)
T PRK07679 138 SKHATAEHIQTAKALFETIGLVSV-VEEEDMHAVTALSGSGPAY-IYYVVEAMEKAAKKIGLKEDVAKSLI 206 (279)
T ss_pred CCCCCHHHHHHHHHHHHhCCcEEE-eCHHHhhhHHHhhcCHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 777889999999999999998554 32210 1000 112 233334433 345689998888877
No 144
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.46 E-value=4.8e-13 Score=141.08 Aligned_cols=181 Identities=19% Similarity=0.158 Sum_probs=126.2
Q ss_pred EEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCCCCEE
Q 004892 313 VIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMV 391 (724)
Q Consensus 313 VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlV 391 (724)
|||+|.||.+||..|+++|++|++||+++++++...+ .| +..+++. +.+++||+|
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g-------------~~~~~s~~~~~~~advV 56 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVA-----------AG-------------AQAAASPAEAAEGADRV 56 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH-----------cC-------------CeecCCHHHHHhcCCEE
Confidence 6899999999999999999999999999988765421 12 1223333 567899999
Q ss_pred EEcccCChHHHHHHH---HHHHhhCCCCcEEEecCCCCCHHH---HhcccCCCCCEEEEecCCCCCC--------CCeee
Q 004892 392 IEAVIESVPLKQKIF---SELEKACPPHCILATNTSTIDLNI---VGEKTSSQDRIIGAHFFSPAHV--------MPLLE 457 (724)
Q Consensus 392 Ieav~e~~~~k~~v~---~~l~~~~~~~~ii~s~ts~~~~~~---~~~~~~~~~r~ig~h~~~p~~~--------~~lve 457 (724)
|.|||.+.++ ++++ ..+.+.+++++++++. |++.+.. +.+.+.. .|.+|.+.|.. +.+..
T Consensus 57 il~vp~~~~~-~~v~~g~~~l~~~~~~g~~vid~-st~~p~~~~~~~~~~~~----~g~~~vdaPv~Gg~~~a~~g~l~~ 130 (288)
T TIGR01692 57 ITMLPAGQHV-ISVYSGDEGILPKVAKGSLLIDC-STIDPDSARKLAELAAA----HGAVFMDAPVSGGVGGARAGTLTF 130 (288)
T ss_pred EEeCCChHHH-HHHHcCcchHhhcCCCCCEEEEC-CCCCHHHHHHHHHHHHH----cCCcEEECCCCCCHHHHhhCcEEE
Confidence 9999965554 4455 5677778888887654 4555543 3333321 14555543322 23333
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCch---hhhhhhh----HHHHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 004892 458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTGF---AVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI-RSFG 526 (724)
Q Consensus 458 ii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~pG~---i~nRl~~----~~~~Ea~~l~~~-Gv~~~~ID~a~-~~~g 526 (724)
++.| +++.+++++++++.+|+.++++++ ..|. ++|.++. ..+.|++.+.+. |++++++..++ .+.|
T Consensus 131 ~~gg---~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~ 206 (288)
T TIGR01692 131 MVGG---VAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSG 206 (288)
T ss_pred EECC---CHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCc
Confidence 4444 578999999999999999999986 3343 4455543 245799998876 89999999998 5444
No 145
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.46 E-value=1.3e-13 Score=161.69 Aligned_cols=93 Identities=14% Similarity=0.166 Sum_probs=85.2
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCCC--CC
Q 004892 618 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF--FK 695 (724)
Q Consensus 618 ~~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~--~~ 695 (724)
-+++||.||++.+++|||+.++++| + +++|||.++..++|||+ |||+++|.+|+|+++++++.++..++++ +.
T Consensus 493 d~pGfv~nRi~~~~~~ea~~lv~~G-a-~~e~ID~a~~~~~G~~~---GP~~~~D~~Gld~~~~~~~~~~~~~~~~~~~~ 567 (715)
T PRK11730 493 DCPGFFVNRVLFPYFAGFSQLLRDG-A-DFRQIDKVMEKQFGWPM---GPAYLLDVVGIDTAHHAQAVMAEGFPDRMKKD 567 (715)
T ss_pred CcCchhHHHHHHHHHHHHHHHHHcC-C-CHHHHHHHHHhhCCCcc---CHHHHHHhhchHHHHHHHHHHHHhcCCccccc
Confidence 3689999999999999999999999 7 89999999999999998 9999999999999999999999888764 34
Q ss_pred CCHHHHHHH-------HcCCCCCCCCC
Q 004892 696 PSRFLEERA-------TKGIPLSAPVS 715 (724)
Q Consensus 696 p~~~l~~~~-------k~g~gfy~~~~ 715 (724)
|++++++|+ |+|+|||+|++
T Consensus 568 ~~~~l~~~v~~G~~G~k~g~GfY~y~~ 594 (715)
T PRK11730 568 YRDAIDVLFEAKRFGQKNGKGFYRYEE 594 (715)
T ss_pred hhHHHHHHHHCCCCccccCCEeEeccc
Confidence 678999999 88999999953
No 146
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.45 E-value=5.2e-12 Score=132.30 Aligned_cols=151 Identities=19% Similarity=0.186 Sum_probs=110.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004892 310 KVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (724)
Q Consensus 310 kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (724)
||+|||+|.||+++|..|.++|+ +|++||++++.++.+. +.|. +....+.+.+.+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~-----------~~g~------------~~~~~~~~~~~~ 58 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL-----------ELGL------------VDEIVSFEELKK 58 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH-----------HCCC------------CcccCCHHHHhc
Confidence 79999999999999999999996 7899999998766542 1221 111223333456
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccC--CCCCEEEEecCCC------CC------CC
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS--SQDRIIGAHFFSP------AH------VM 453 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~--~~~r~ig~h~~~p------~~------~~ 453 (724)
||+||.|+| .+...+++.++.+ ++++++|++.+|+. . .+...+. .+.+|++.||+.+ .. .+
T Consensus 59 aD~Vilavp--~~~~~~~~~~l~~-l~~~~iv~d~gs~k-~-~i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g 133 (275)
T PRK08507 59 CDVIFLAIP--VDAIIEILPKLLD-IKENTTIIDLGSTK-A-KIIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEG 133 (275)
T ss_pred CCEEEEeCc--HHHHHHHHHHHhc-cCCCCEEEECccch-H-HHHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCC
Confidence 999999999 6667788888888 88899888654432 2 2222221 2357999999742 21 34
Q ss_pred CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004892 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (724)
Q Consensus 454 ~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d 488 (724)
..+.+++.+.++++.++.+.++++.+|..++.+.+
T Consensus 134 ~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~ 168 (275)
T PRK08507 134 KVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMDA 168 (275)
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeCH
Confidence 55667788888999999999999999999999853
No 147
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.45 E-value=7.6e-13 Score=146.95 Aligned_cols=189 Identities=13% Similarity=0.152 Sum_probs=126.9
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-c--
Q 004892 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S-- 383 (724)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~-- 383 (724)
.+.+|+|||+|.||.+||.+|+++|++|++|||++++.+...+... ..|. ..+....+. +
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~-------~~Ga----------~~~~~a~s~~e~v 67 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEGN----------LPLYGFKDPEDFV 67 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhh-------hcCC----------cccccCCCHHHHH
Confidence 3568999999999999999999999999999999998876543100 0021 011122333 2
Q ss_pred -CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH--HHhcccCCCCCEEEEecCCCC--------CC
Q 004892 384 -EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPA--------HV 452 (724)
Q Consensus 384 -~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~~~~r~ig~h~~~p~--------~~ 452 (724)
.++.+|+||.|||.+..+. +++..+.+.+.++.||+..++..+.+ .+.+.+... |+||+..| ..
T Consensus 68 ~~l~~~dvIi~~v~~~~aV~-~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~----Gi~fldapVSGG~~gA~~ 142 (493)
T PLN02350 68 LSIQKPRSVIILVKAGAPVD-QTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEK----GLLYLGMGVSGGEEGARN 142 (493)
T ss_pred hcCCCCCEEEEECCCcHHHH-HHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHc----CCeEEeCCCcCCHHHhcC
Confidence 3445999999999776654 55578888888888887544443322 333333211 55654433 23
Q ss_pred CCeeeEecCCCCCHHHHHHHHHHHHHcCCe------eEEEcCCCc--h---hh-hhhhh---HHHHHHHHHHHc--CCCH
Q 004892 453 MPLLEIVRTERTSAQVILDLMTVGKIIKKV------PVVVGNCTG--F---AV-NRAFF---PYSQSARLLVSL--GVDV 515 (724)
Q Consensus 453 ~~lveii~~~~t~~e~~~~~~~l~~~lGk~------~v~v~d~pG--~---i~-nRl~~---~~~~Ea~~l~~~--Gv~~ 515 (724)
++ -+++|. +++++++++++++.++.+ ++++++ +| . ++ |-+.. ..+.|++.+++. |+++
T Consensus 143 G~--~im~GG--~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~-~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~ 217 (493)
T PLN02350 143 GP--SLMPGG--SFEAYKNIEDILEKVAAQVDDGPCVTYIGP-GGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSN 217 (493)
T ss_pred CC--eEEecC--CHHHHHHHHHHHHHHhhhcCCCCcEEEeCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCH
Confidence 33 345543 799999999999999954 778886 34 2 33 43433 334599999865 8999
Q ss_pred HHHHHHH
Q 004892 516 FRIDSAI 522 (724)
Q Consensus 516 ~~ID~a~ 522 (724)
+++-.++
T Consensus 218 ~~l~~vf 224 (493)
T PLN02350 218 EELAEVF 224 (493)
T ss_pred HHHHHHH
Confidence 9998885
No 148
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.45 E-value=1.6e-12 Score=144.27 Aligned_cols=193 Identities=13% Similarity=0.107 Sum_probs=130.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cC--
Q 004892 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE-- 384 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~-- 384 (724)
|.+|+|||+|.||++||.+|+++||+|++|||++++.+...+... ..|. .+..++++ +.
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~-----------~i~~~~s~~e~v~ 62 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAK-------EGNT-----------RVKGYHTLEELVN 62 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhh-------hcCC-----------cceecCCHHHHHh
Confidence 358999999999999999999999999999999999877543211 0111 12233444 22
Q ss_pred -cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCe------ee
Q 004892 385 -FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPL------LE 457 (724)
Q Consensus 385 -~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~l------ve 457 (724)
++++|+||.+|+.. +...++++++.+.+.++.||++.+++.+.+.........++ |+||...|..+.. --
T Consensus 63 ~l~~~d~Iil~v~~~-~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~--Gi~fldapVSGG~~gA~~G~~ 139 (470)
T PTZ00142 63 SLKKPRKVILLIKAG-EAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEK--GILYLGMGVSGGEEGARYGPS 139 (470)
T ss_pred cCCCCCEEEEEeCCh-HHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHc--CCeEEcCCCCCCHHHHhcCCE
Confidence 34689999998844 45567778899999999999876666554433222111112 6677654422211 12
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCe------eEEEcCC-Cch---hh-hhhhhH---HHHHHHHHHH--cCCCHHHHHHH
Q 004892 458 IVRTERTSAQVILDLMTVGKIIKKV------PVVVGNC-TGF---AV-NRAFFP---YSQSARLLVS--LGVDVFRIDSA 521 (724)
Q Consensus 458 ii~~~~t~~e~~~~~~~l~~~lGk~------~v~v~d~-pG~---i~-nRl~~~---~~~Ea~~l~~--~Gv~~~~ID~a 521 (724)
++.|. ++++++.++++++.++.+ ..++++. .|. ++ |-+.+. .+.|++.+++ .|++++++-.+
T Consensus 140 lm~GG--~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v 217 (470)
T PTZ00142 140 LMPGG--NKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEV 217 (470)
T ss_pred EEEeC--CHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHH
Confidence 45544 699999999999999987 5777752 232 22 444443 3459999986 48899999888
Q ss_pred HH
Q 004892 522 IR 523 (724)
Q Consensus 522 ~~ 523 (724)
+.
T Consensus 218 ~~ 219 (470)
T PTZ00142 218 FN 219 (470)
T ss_pred HH
Confidence 74
No 149
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.44 E-value=2e-13 Score=159.79 Aligned_cols=92 Identities=15% Similarity=0.195 Sum_probs=84.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCCCC--C
Q 004892 618 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFF--K 695 (724)
Q Consensus 618 ~~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~--~ 695 (724)
-.++||.||++.++++||++++++| + ++++||.++..++|||+ |||+++|.+|+|+.+++++.+.+.+++++ .
T Consensus 493 d~pGfi~NRl~~~~~~ea~~l~~eG-~-~~~~ID~a~~~~~G~p~---GPf~l~D~~Gld~~~~i~~~~~~~~~~~~~~~ 567 (714)
T TIGR02437 493 DCPGFFVNRVLFPYFGGFSKLLRDG-A-DFVRIDKVMEKQFGWPM---GPAYLLDVVGIDTGHHAQAVMAEGFPDRMGKD 567 (714)
T ss_pred CcccchHHHHHHHHHHHHHHHHHCC-C-CHHHHHHHHHhcCCCcc---CHHHHHHhhhHHHHHHHHHHHHHhcCcccccc
Confidence 3589999999999999999999999 6 89999999999999998 99999999999999999999998887654 3
Q ss_pred CCHHHHHHH-------HcCCCCCCCC
Q 004892 696 PSRFLEERA-------TKGIPLSAPV 714 (724)
Q Consensus 696 p~~~l~~~~-------k~g~gfy~~~ 714 (724)
|++++.+|+ |+|+|||+|+
T Consensus 568 ~~~~l~~~v~~G~lG~K~g~GfY~y~ 593 (714)
T TIGR02437 568 GRDAIDALFEAKRLGQKNGKGFYAYE 593 (714)
T ss_pred hhHHHHHHHHCCCCcccCCCEEEecc
Confidence 578999999 8899999995
No 150
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.42 E-value=2.8e-12 Score=132.64 Aligned_cols=163 Identities=17% Similarity=0.192 Sum_probs=121.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHH--HHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccC--cc
Q 004892 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--YS 383 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~~ 383 (724)
+++|+|+|+|.||+++|..+.+.|+.|.+++++... ++.+ .+.|..++ .+.+ .+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a-----------~~lgv~d~-----------~~~~~~~~ 60 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAA-----------LELGVIDE-----------LTVAGLAE 60 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHH-----------hhcCcccc-----------cccchhhh
Confidence 478999999999999999999999998777665543 3332 12232211 1122 35
Q ss_pred CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCC--HHHHhcccCCCCCEEEEecCCCC------CCCCe
Q 004892 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPA------HVMPL 455 (724)
Q Consensus 384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~~~~r~ig~h~~~p~------~~~~l 455 (724)
.+.++|+||.||| .....++++++.+.++++++|+..+|+.. +..+........+|+|.||...+ ..+..
T Consensus 61 ~~~~aD~VivavP--i~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~ 138 (279)
T COG0287 61 AAAEADLVIVAVP--IEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAV 138 (279)
T ss_pred hcccCCEEEEecc--HHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCE
Confidence 6788999999999 88999999999999999999987777643 44444444332289999997766 23345
Q ss_pred eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc-CCCchhh
Q 004892 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVG-NCTGFAV 494 (724)
Q Consensus 456 veii~~~~t~~e~~~~~~~l~~~lGk~~v~v~-d~pG~i~ 494 (724)
+.+++++.++.+.++.++.+++.+|..++.+. +.+-.+.
T Consensus 139 ~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~~eeHD~~~ 178 (279)
T COG0287 139 VVLTPSEGTEKEWVEEVKRLWEALGARLVEMDAEEHDRVM 178 (279)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcChHHHhHHH
Confidence 66788888899999999999999999999884 4444444
No 151
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.42 E-value=4.6e-12 Score=140.53 Aligned_cols=160 Identities=18% Similarity=0.151 Sum_probs=121.7
Q ss_pred eEEEEc-CCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004892 310 KVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (724)
Q Consensus 310 kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (724)
||+||| +|.||.++|..|.++|++|++||++++...+... +.| +..+++. +.+.+
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~----------~~g-------------v~~~~~~~e~~~~ 58 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAK----------ELG-------------VEYANDNIDAAKD 58 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHH----------HcC-------------CeeccCHHHHhcc
Confidence 799997 7999999999999999999999999877543211 111 1223343 56789
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHhcccCCCCCEEEEecCC----CCCCCCeeeEecC
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFS----PAHVMPLLEIVRT 461 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~~~~r~ig~h~~~----p~~~~~lveii~~ 461 (724)
||+||.|+| .+...+++.++.+.++++++|++.+|+ .+...+....+...+|++.||+. |...+..+.++++
T Consensus 59 aDvVIlavp--~~~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p~ 136 (437)
T PRK08655 59 ADIVIISVP--INVTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTPT 136 (437)
T ss_pred CCEEEEecC--HHHHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEecC
Confidence 999999999 566678899999999999999877764 44455555555456899999764 3345566778888
Q ss_pred CCCCHHHHHHHHHHHHHcCCeeEEEc-CCCchhh
Q 004892 462 ERTSAQVILDLMTVGKIIKKVPVVVG-NCTGFAV 494 (724)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lGk~~v~v~-d~pG~i~ 494 (724)
+.++++.++.+.+++..+|..++++. +.+..++
T Consensus 137 ~~~~~~~~~~v~~ll~~~G~~v~~~~~e~HD~~~ 170 (437)
T PRK08655 137 EKRSNPWFDKVKNFLEKEGARVIVTSPEEHDRIM 170 (437)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHH
Confidence 88899999999999999999998874 3444333
No 152
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.41 E-value=9.8e-13 Score=150.19 Aligned_cols=167 Identities=22% Similarity=0.268 Sum_probs=131.4
Q ss_pred cCcEEEEEeCCC--C-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC---CCCccCCCCchhhhhccCCCcccccchh
Q 004892 12 NDGVAIITLINP--P-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN---GGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (724)
Q Consensus 12 ~~~v~~i~l~~p--~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~---g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (724)
+++|++|+++.+ + .|..+....+.+.+.++.+..|++||+|||+-. |..||+ .++
T Consensus 307 ~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as----e~i--------------- 367 (584)
T TIGR00705 307 QDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS----EII--------------- 367 (584)
T ss_pred CCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH----HHH---------------
Confidence 678999999887 2 354444456788899999999999999999743 233443 111
Q ss_pred HHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCcee------eCcc------cccCccCCcchhhhhcc-
Q 004892 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL------GLPE------LTLGVIPGFGGTQRLPR- 152 (724)
Q Consensus 86 ~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f------~~pe------~~~G~~P~~g~~~~l~r- 152 (724)
.+.+ ..+...+|||||.++|.|.+||..++++||.++|++.+.+ +.+. .++|+.|....+..+..
T Consensus 368 -~~~i-~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~ 445 (584)
T TIGR00705 368 -RREL-ARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANV 445 (584)
T ss_pred -HHHH-HHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCC
Confidence 1233 3466788999999999999999999999999999999877 5553 58999998877776664
Q ss_pred ---------------------------cccHHH-----HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHH
Q 004892 153 ---------------------------LVGLSK-----AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDI 200 (724)
Q Consensus 153 ---------------------------~~G~~~-----a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l 200 (724)
.++..+ +.+.+.+|+.+++++|+++||||++- .+ +.|.+.|.++
T Consensus 446 s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig---~~-~~Ai~~a~~l 521 (584)
T TIGR00705 446 SLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALG---GL-DEAVAKAAKL 521 (584)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCC---CH-HHHHHHHHHH
Confidence 566666 78889999999999999999999994 34 6777888888
Q ss_pred Hcc
Q 004892 201 AAR 203 (724)
Q Consensus 201 a~~ 203 (724)
+..
T Consensus 522 a~~ 524 (584)
T TIGR00705 522 AHC 524 (584)
T ss_pred cCC
Confidence 887
No 153
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.41 E-value=5.9e-12 Score=133.30 Aligned_cols=186 Identities=9% Similarity=0.029 Sum_probs=122.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCCC
Q 004892 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV 388 (724)
Q Consensus 310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~a 388 (724)
||+|||+|.||.+||..|+++|++|++|||++++++...+ .+... .....+. +.+.++
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~-----------~g~~~----------~~s~~~~~~~~~~~ 60 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKE-----------DRTTG----------VANLRELSQRLSAP 60 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------cCCcc----------cCCHHHHHhhcCCC
Confidence 7999999999999999999999999999999998776432 12110 0000111 345679
Q ss_pred CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH--HHhcccC-CCCCEEEEecCCCC---CCCCeeeEecCC
Q 004892 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEIVRTE 462 (724)
Q Consensus 389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~-~~~r~ig~h~~~p~---~~~~lveii~~~ 462 (724)
|+||.|+|.+ ..++++.++.+.++++.+|++.+++.+.+ ++...+. ...+|+..+....+ ..+ + -++.+.
T Consensus 61 dvIi~~vp~~--~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G-~-~~~~gG 136 (298)
T TIGR00872 61 RVVWVMVPHG--IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERG-Y-CFMIGG 136 (298)
T ss_pred CEEEEEcCch--HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcC-C-eeeeCC
Confidence 9999999954 66788889999998888887655554333 3323332 22233333322111 112 2 223332
Q ss_pred CCCHHHHHHHHHHHHHcCC---eeEEEcCCC-ch----hhhhhhhHH---HHHHHHHHHc-C--CCHHHHHHHH
Q 004892 463 RTSAQVILDLMTVGKIIKK---VPVVVGNCT-GF----AVNRAFFPY---SQSARLLVSL-G--VDVFRIDSAI 522 (724)
Q Consensus 463 ~t~~e~~~~~~~l~~~lGk---~~v~v~d~p-G~----i~nRl~~~~---~~Ea~~l~~~-G--v~~~~ID~a~ 522 (724)
++++++.++++++.++. ..+++++.. |. +.|-+.... +.|++.+++. | ++++++-.+|
T Consensus 137 --~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~ 208 (298)
T TIGR00872 137 --DGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVW 208 (298)
T ss_pred --CHHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence 68999999999999996 467777631 21 224343333 3499999977 4 5999999887
No 154
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.41 E-value=1.4e-12 Score=125.31 Aligned_cols=135 Identities=25% Similarity=0.272 Sum_probs=105.7
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEECc
Q 004892 28 LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEG 107 (724)
Q Consensus 28 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G 107 (724)
+++.++++|.+.|+.++.|+.+++|+|.. .|.|+|+... ..+. +.|..++||||+.++|
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~----~s~Gg~~~~~----------------~~i~-~~l~~~~kpvva~~~g 66 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEV----NTPGGRVDAG----------------MNIV-DALQASRKPVIAYVGG 66 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEE----ECCCcCHHHH----------------HHHH-HHHHHhCCCEEEEECC
Confidence 66688999999999999999999999975 4677765432 2334 5577889999999999
Q ss_pred cccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchh-------------hhh------cccccHHHHHHHHHcCCC
Q 004892 108 LALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGT-------------QRL------PRLVGLSKAIEMMLLSKS 168 (724)
Q Consensus 108 ~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~-------------~~l------~r~~G~~~a~~l~ltg~~ 168 (724)
.|.++|+.|+++||.|++.+++.|++..+..+.....+-. ..+ .|.+......+++..|..
T Consensus 67 ~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~ 146 (161)
T cd00394 67 QAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLV 146 (161)
T ss_pred hhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcE
Confidence 9999999999999999999999999988876653321000 011 122344456788889999
Q ss_pred CCHHHHHHCCCccee
Q 004892 169 ITSEEGWKLGLIDAV 183 (724)
Q Consensus 169 i~a~eA~~~Glv~~v 183 (724)
++++||++.||||++
T Consensus 147 ~~a~eA~~~GLvD~i 161 (161)
T cd00394 147 LTAQEALEYGLVDAL 161 (161)
T ss_pred EcHHHHHHcCCcCcC
Confidence 999999999999975
No 155
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.41 E-value=3.6e-12 Score=134.17 Aligned_cols=183 Identities=17% Similarity=0.168 Sum_probs=121.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCC
Q 004892 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (724)
Q Consensus 310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 389 (724)
||+|||+|.||.+||.+|.++|++|++||+++. .++. .+.|. ....+..+.+++||
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~-----------~~~g~------------~~~~s~~~~~~~ad 57 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADEL-----------LSLGA------------VSVETARQVTEASD 57 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHH-----------HHcCC------------eecCCHHHHHhcCC
Confidence 799999999999999999999999999999874 2221 11221 11122225578999
Q ss_pred EEEEcccCChHHHHHHHHH--HHhhCCCCcEEEecCCCCCHH---HHhcccC-CCCCEEEEecCCCC----CCCCeeeEe
Q 004892 390 MVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDLN---IVGEKTS-SQDRIIGAHFFSPA----HVMPLLEIV 459 (724)
Q Consensus 390 lVIeav~e~~~~k~~v~~~--l~~~~~~~~ii~s~ts~~~~~---~~~~~~~-~~~r~ig~h~~~p~----~~~~lveii 459 (724)
+||.|||++.++...++.. +.+.+.++.+++. +|+.++. +++..+. +..+|+. +|+... ..+.+.-++
T Consensus 58 vVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd-~sT~~p~~~~~~~~~~~~~G~~~vd-aPVsGg~~~a~~g~l~~~~ 135 (292)
T PRK15059 58 IIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVD-MSSISPIETKRFARQVNELGGDYLD-APVSGGEIGAREGTLSIMV 135 (292)
T ss_pred EEEEeCCChHHHHHHHcCCcchhccCCCCCEEEE-CCCCCHHHHHHHHHHHHHcCCCEEE-ecCCCCHHHHhcCcEEEEE
Confidence 9999999876666555432 5555677887764 4444444 3333332 2334554 233211 222333333
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc-----hhhhhhhh----HHHHHHHHHHHc-CCCHHHHHHHH
Q 004892 460 RTERTSAQVILDLMTVGKIIKKVPVVVGNCTG-----FAVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI 522 (724)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG-----~i~nRl~~----~~~~Ea~~l~~~-Gv~~~~ID~a~ 522 (724)
.| +++++++++++++.+|+.++++++. | .++|.++. ..+.|++.+.+. |++++++-.++
T Consensus 136 gG---~~~~~~~~~p~l~~~g~~~~~~G~~-G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l 204 (292)
T PRK15059 136 GG---DEAVFERVKPLFELLGKNITLVGGN-GDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQAL 204 (292)
T ss_pred cC---CHHHHHHHHHHHHHHcCCcEEeCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 33 6899999999999999999999873 4 24455433 234699988866 89999877777
No 156
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.39 E-value=3.7e-12 Score=134.98 Aligned_cols=181 Identities=18% Similarity=0.116 Sum_probs=120.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC--
Q 004892 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK-- 386 (724)
Q Consensus 310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~-- 386 (724)
||+|||+|.||.++|..|+++|++|++||+++++.+... +.| .....+. +.++
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g-------------~~~~~s~~~~~~~~ 57 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAG-----------KLG-------------ITARHSLEELVSKL 57 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-----------HCC-------------CeecCCHHHHHHhC
Confidence 799999999999999999999999999999998766532 112 1122333 2233
Q ss_pred -CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH--HHHhcccCCCCCEEEEecCCCCCCCCe-------e
Q 004892 387 -DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSSQDRIIGAHFFSPAHVMPL-------L 456 (724)
Q Consensus 387 -~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~~~~r~ig~h~~~p~~~~~l-------v 456 (724)
++|+||.|+|.+.. .++++..+.+.++++.+|+..+++.+. .++...+... |.+|.+.|..+.. .
T Consensus 58 ~~advVi~~vp~~~~-~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~----g~~~vdapV~G~~~~a~~g~~ 132 (299)
T PRK12490 58 EAPRTIWVMVPAGEV-TESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAER----GIHYVDCGTSGGVWGLRNGYC 132 (299)
T ss_pred CCCCEEEEEecCchH-HHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHc----CCeEEeCCCCCCHHHHhcCCe
Confidence 37999999996544 456667888878888887754333332 2343433221 3455543322221 2
Q ss_pred eEecCCCCCHHHHHHHHHHHHHcCC---eeEEEcCCCc-----hhhhhh-hh---HHHHHHHHHHHc-C--CCHHHHHHH
Q 004892 457 EIVRTERTSAQVILDLMTVGKIIKK---VPVVVGNCTG-----FAVNRA-FF---PYSQSARLLVSL-G--VDVFRIDSA 521 (724)
Q Consensus 457 eii~~~~t~~e~~~~~~~l~~~lGk---~~v~v~d~pG-----~i~nRl-~~---~~~~Ea~~l~~~-G--v~~~~ID~a 521 (724)
-++.| +++++++++++++.+|. ..+++++ +| .++|++ .. ..+.|++.+.++ | ++++++-.+
T Consensus 133 ~~~gG---~~~~~~~~~~~l~~~~~~~~~~~~~G~-~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~ 208 (299)
T PRK12490 133 LMVGG---DKEIYDRLEPVFKALAPEGPGYVHAGP-VGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARL 208 (299)
T ss_pred EEecC---CHHHHHHHHHHHHHhcCcCCcEEEECC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHH
Confidence 22333 68999999999999997 6788876 44 233443 32 233599999986 7 888888888
Q ss_pred HH
Q 004892 522 IR 523 (724)
Q Consensus 522 ~~ 523 (724)
+.
T Consensus 209 ~~ 210 (299)
T PRK12490 209 WR 210 (299)
T ss_pred Hc
Confidence 74
No 157
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.39 E-value=2.4e-12 Score=129.38 Aligned_cols=156 Identities=25% Similarity=0.289 Sum_probs=105.5
Q ss_pred EEEEEeC-----CCC-CCC-CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHH
Q 004892 15 VAIITLI-----NPP-VNA-LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSV 87 (724)
Q Consensus 15 v~~i~l~-----~p~-~Na-l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 87 (724)
|++|.++ +|. .|+ ++..++.+|.++|+.++.|+++++|||+. +|.|+++.... ...
T Consensus 2 v~vi~~~g~i~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~----~s~gg~~~~~~-------------~l~ 64 (214)
T cd07022 2 VAVIPVHGVLVPRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI----DSPGGEVAGVF-------------ELA 64 (214)
T ss_pred EEEEEEEEEEeCCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE----eCCCCcHHHHH-------------HHH
Confidence 4555553 332 354 45789999999999999999999999974 56676654321 111
Q ss_pred HHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccc------------cCccCCc---------ch
Q 004892 88 ELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPGF---------GG 146 (724)
Q Consensus 88 ~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~G~~P~~---------g~ 146 (724)
+.+ ..+.. +|||||+++|.|.|+|+.|+++||++++++++.|+...+. +|+-+.. +.
T Consensus 65 ~~l-~~~~~-~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~ 142 (214)
T cd07022 65 DAI-RAARA-GKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGN 142 (214)
T ss_pred HHH-HHHhc-CCCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCC
Confidence 222 22333 5999999999999999999999999999999998654333 2321110 00
Q ss_pred -----h----hhh-----------------cccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHH
Q 004892 147 -----T----QRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191 (724)
Q Consensus 147 -----~----~~l-----------------~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~ 191 (724)
+ ..+ .|-+......+++ |..+++++|++.||||++...+++..
T Consensus 143 ~~~~~s~~~re~~~~~l~~~~~~f~~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~~~~~~ 211 (214)
T cd07022 143 PDEPLSDEARARLQAEVDALYAMFVAAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGTLDDALA 211 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCHHHHHH
Confidence 0 000 1122333344444 99999999999999999987666543
No 158
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.39 E-value=4.1e-12 Score=134.77 Aligned_cols=182 Identities=16% Similarity=0.138 Sum_probs=122.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc---
Q 004892 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF--- 385 (724)
Q Consensus 310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~--- 385 (724)
||+|||+|.||.+||..|+++|++|++||+++++.+...+ .| ....++. +.+
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~-----------~g-------------~~~~~~~~e~~~~~ 57 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAE-----------EG-------------ATGADSLEELVAKL 57 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-----------CC-------------CeecCCHHHHHhhc
Confidence 7999999999999999999999999999999988766421 12 1122233 222
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH--HHhcccCCCCCEEEEecCCCCCCCCe------ee
Q 004892 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHVMPL------LE 457 (724)
Q Consensus 386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~~~~r~ig~h~~~p~~~~~l------ve 457 (724)
.++|+||.++|.+.. ..+++..+.+.++++.++++.+++.+.+ .+...+... |.+|.+.|..+.. .-
T Consensus 58 ~~~dvvi~~v~~~~~-~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~----g~~~~dapvsG~~~~a~~g~~ 132 (301)
T PRK09599 58 PAPRVVWLMVPAGEI-TDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEK----GIHFVDVGTSGGVWGLERGYC 132 (301)
T ss_pred CCCCEEEEEecCCcH-HHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHc----CCEEEeCCCCcCHHHHhcCCe
Confidence 247999999996544 3556677888888888887554444322 333333221 4555543322211 12
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCC----eeEEEcCCCch-----hhhh-hhhHH---HHHHHHHHH---cCCCHHHHHHH
Q 004892 458 IVRTERTSAQVILDLMTVGKIIKK----VPVVVGNCTGF-----AVNR-AFFPY---SQSARLLVS---LGVDVFRIDSA 521 (724)
Q Consensus 458 ii~~~~t~~e~~~~~~~l~~~lGk----~~v~v~d~pG~-----i~nR-l~~~~---~~Ea~~l~~---~Gv~~~~ID~a 521 (724)
++.+ -+++++++++++++.+++ .++++++ +|. ++|+ +.... +.|++.+.+ .|++++++-.+
T Consensus 133 ~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~~G~-~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~ 209 (301)
T PRK09599 133 LMIG--GDKEAVERLEPIFKALAPRAEDGYLHAGP-VGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEV 209 (301)
T ss_pred EEec--CCHHHHHHHHHHHHHHcccccCCeEeECC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3333 278999999999999999 7888887 342 2333 33332 358999886 47899999988
Q ss_pred HH
Q 004892 522 IR 523 (724)
Q Consensus 522 ~~ 523 (724)
+.
T Consensus 210 ~~ 211 (301)
T PRK09599 210 WR 211 (301)
T ss_pred Hh
Confidence 84
No 159
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.38 E-value=1.9e-11 Score=134.89 Aligned_cols=196 Identities=14% Similarity=0.139 Sum_probs=127.0
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH--------HHHHHHhhHhcCCCCHHHHHHhhcCccc
Q 004892 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT--------IEANVRGLVTRGKLTQDKANNALKMLKG 378 (724)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~--------i~~~~~~~~~~g~~~~~~~~~~~~~i~~ 378 (724)
.++||+|||+|.||.++|.+|+++||+|++||+++++++..... +...+.+.++ .+++.+
T Consensus 2 ~~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~------------~g~l~~ 69 (415)
T PRK11064 2 SFETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVE------------GGYLRA 69 (415)
T ss_pred CccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhh------------cCceee
Confidence 36799999999999999999999999999999999988764211 0111111111 134444
Q ss_pred ccCccCcCCCCEEEEcccCC--------hHHHHHHHHHHHhhCCCCcEEEecCCCCC--HHHHhcccCC-------C---
Q 004892 379 VLDYSEFKDVDMVIEAVIES--------VPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSS-------Q--- 438 (724)
Q Consensus 379 ~~~~~~~~~aDlVIeav~e~--------~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~~-------~--- 438 (724)
+++ +++||+||.|||.+ ......+.+.+.++++++++|+..|+..+ ...+...+.. |
T Consensus 70 ~~~---~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~ 146 (415)
T PRK11064 70 TTT---PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQA 146 (415)
T ss_pred ecc---cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccc
Confidence 443 45899999999964 35666777889999999988764333222 1223221110 0
Q ss_pred ---CCEEEEecCCCC--CCCCee-------eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc------hhhhhh---
Q 004892 439 ---DRIIGAHFFSPA--HVMPLL-------EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRA--- 497 (724)
Q Consensus 439 ---~r~ig~h~~~p~--~~~~lv-------eii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG------~i~nRl--- 497 (724)
..|.-. ++|- .-+..+ -++.| .+++..++++++++.+++.++++++ ++ ++.|-+
T Consensus 147 g~~~~f~v~--~~PE~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~-~~~Ae~~Kl~~N~~~a~ 221 (415)
T PRK11064 147 GEQADINIA--YCPERVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVTN-SRTAEMCKLTENSFRDV 221 (415)
T ss_pred cCCCCeEEE--ECCCccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCC-HHHHHHHHHHHHHHHHH
Confidence 011111 2331 111111 34544 3789999999999999988777764 33 233433
Q ss_pred hhHHHHHHHHHHHc-CCCHHHHHHHH
Q 004892 498 FFPYSQSARLLVSL-GVDVFRIDSAI 522 (724)
Q Consensus 498 ~~~~~~Ea~~l~~~-Gv~~~~ID~a~ 522 (724)
..+++||+..+.+. |+++.++-+++
T Consensus 222 ~ia~~nE~~~lae~~GiD~~~v~~~~ 247 (415)
T PRK11064 222 NIAFANELSLICADQGINVWELIRLA 247 (415)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHh
Confidence 24788999988877 99999988777
No 160
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.38 E-value=6.9e-12 Score=133.57 Aligned_cols=161 Identities=17% Similarity=0.127 Sum_probs=116.1
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-c
Q 004892 307 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (724)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (724)
.++||+|||+|.||.++|..|.+.|+ +|++||++++.++.+.+ .|.. ....++. +
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~-----------~g~~-----------~~~~~~~~~ 62 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE-----------LGLG-----------DRVTTSAAE 62 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh-----------CCCC-----------ceecCCHHH
Confidence 45799999999999999999999995 89999999987665421 1211 0112233 4
Q ss_pred CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCC--CHHHHhcccCCCCCEEEEecCCCCCC---------
Q 004892 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAHV--------- 452 (724)
Q Consensus 384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~~~~~~~~~~r~ig~h~~~p~~~--------- 452 (724)
.+++||+||+|+| .....+++.++.+.++++++|++.+|.. .+..+........+|++.||+.+...
T Consensus 63 ~~~~aDvViiavp--~~~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~ 140 (307)
T PRK07502 63 AVKGADLVILCVP--VGASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAE 140 (307)
T ss_pred HhcCCCEEEECCC--HHHHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHH
Confidence 5789999999999 5566788888888888998876544432 12233333344458999999865432
Q ss_pred ---CCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc-CCCc
Q 004892 453 ---MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG-NCTG 491 (724)
Q Consensus 453 ---~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~-d~pG 491 (724)
+..+.+++...++++.++.+.++++.+|..++++. +.+.
T Consensus 141 l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~~~~hD 183 (307)
T PRK07502 141 LFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEMDPEHHD 183 (307)
T ss_pred HHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHh
Confidence 22345677777889999999999999999998874 3344
No 161
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.38 E-value=1.3e-12 Score=153.20 Aligned_cols=103 Identities=20% Similarity=0.187 Sum_probs=92.8
Q ss_pred HHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC--CHHHHHHHH-HhcCCCc---cHHHHHHhhchHHH
Q 004892 470 LDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQLLDLAGYGVA 543 (724)
Q Consensus 470 ~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv--~~~~ID~a~-~~~g~~~---Gp~~~~D~~Gld~~ 543 (724)
..+..++..+++.++.+.+.||||+||++.+++||+++++++|+ +++|||.++ .++|||+ |||+++|.+|+|.+
T Consensus 625 ~~v~~~~~~~~k~p~~~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~v 704 (737)
T TIGR02441 625 SDADEILAQYKLPPKAEVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKL 704 (737)
T ss_pred HHHHHHHHHhccCcccccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHH
Confidence 34556677788888766789999999999999999999999997 999999999 8999996 99999999999999
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHc-CC
Q 004892 544 AATSKEFDKAFPDRSFQSPLVDLLLKS-GR 572 (724)
Q Consensus 544 ~~~~~~l~~~~~~~~~~~~~l~~~v~~-g~ 572 (724)
.+.++.+++.+++++.|++++.+|+++ |+
T Consensus 705 ~~~~~~l~~~~g~~~~p~~lL~~~~~~~g~ 734 (737)
T TIGR02441 705 VDKMEKYAAAYGVQFTPCQLLLDHAKSPGK 734 (737)
T ss_pred HHHHHHHHHHhCCCcCCCHHHHHHHHhcCC
Confidence 999999999999877799999999986 64
No 162
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.37 E-value=2.7e-11 Score=129.48 Aligned_cols=205 Identities=16% Similarity=0.069 Sum_probs=134.1
Q ss_pred cHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCCCCEEEEcccCC
Q 004892 320 GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIES 398 (724)
Q Consensus 320 G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVIeav~e~ 398 (724)
|.+||..|+++||+|++||++++.++... . +...+.| +..+++. +.+++||+||.|+|..
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~--~----~~l~~~G-------------i~~asd~~eaa~~ADvVIlaVP~~ 92 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEEL--W----KKVEDAG-------------VKVVSDDAEAAKHGEIHILFTPFG 92 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHH--H----HHHHHCC-------------CEEeCCHHHHHhCCCEEEEECCCc
Confidence 89999999999999999999998654311 0 1111222 3334444 5678999999999954
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHH----hcccCCCCCEEEEecCCCCCC----CCeeeEecCCC------C
Q 004892 399 VPLKQKIFSELEKACPPHCILATNTSTIDLNIV----GEKTSSQDRIIGAHFFSPAHV----MPLLEIVRTER------T 464 (724)
Q Consensus 399 ~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~----~~~~~~~~r~ig~h~~~p~~~----~~lveii~~~~------t 464 (724)
. ..++++..+.+.++++++|++ +|+.+.... ...+..+.+.++.||++|... ...++++.+.. .
T Consensus 93 ~-~v~~Vl~~L~~~L~~g~IVId-~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~ 170 (342)
T PRK12557 93 K-KTVEIAKNILPHLPENAVICN-TCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTELA 170 (342)
T ss_pred H-HHHHHHHHHHhhCCCCCEEEE-ecCCCHHHHHHHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccCC
Confidence 4 467788899999999988774 555555433 244444445667877766532 12245665443 3
Q ss_pred CHHHHHHHHHHHHHcCCeeEEEcCCCchh---hhhhhhHH----HHHHHHHHHc-CCCHHHHHHHH-HhcCCCccHHHHH
Q 004892 465 SAQVILDLMTVGKIIKKVPVVVGNCTGFA---VNRAFFPY----SQSARLLVSL-GVDVFRIDSAI-RSFGLPIGPFQLL 535 (724)
Q Consensus 465 ~~e~~~~~~~l~~~lGk~~v~v~d~pG~i---~nRl~~~~----~~Ea~~l~~~-Gv~~~~ID~a~-~~~g~~~Gp~~~~ 535 (724)
+++.+++++++++.+|+++++++...|.. +|.++.+. ..|++.+.+. |.+|.+.-+-+ ... -.|--.++
T Consensus 171 ~~e~~e~v~~LL~a~G~~v~~~~~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~~--~~~~a~l~ 248 (342)
T PRK12557 171 TEEQIEKCVELAESIGKEPYVVPADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQILMT--LQTMASLV 248 (342)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH--HHHHHHHH
Confidence 89999999999999999998877533333 24444333 3488888866 77776654443 221 13666777
Q ss_pred HhhchHHHHHHH
Q 004892 536 DLAGYGVAAATS 547 (724)
Q Consensus 536 D~~Gld~~~~~~ 547 (724)
-..|+|...+.+
T Consensus 249 ~~~~~~~~~~~~ 260 (342)
T PRK12557 249 ETSGVDGLLKAL 260 (342)
T ss_pred HHhChHHHHHhc
Confidence 777777665543
No 163
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.36 E-value=7.5e-12 Score=138.63 Aligned_cols=201 Identities=19% Similarity=0.177 Sum_probs=129.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHH--hhcCcccccCc-cCcC
Q 004892 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANN--ALKMLKGVLDY-SEFK 386 (724)
Q Consensus 310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~--~~~~i~~~~~~-~~~~ 386 (724)
||+|||+|.||.++|..|+++||+|++||+++++++...+... ...+.+ +. +.... ..++++.+++. ++++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~----~~~e~~-l~-~~~~~~~~~g~l~~~~~~~~~~~ 75 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKS----PIYEPG-LD-ELLAKALAAGRLRATTDYEDAIR 75 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCC----CCCCCC-HH-HHHHHhhhcCCeEEECCHHHHHh
Confidence 7999999999999999999999999999999998876432100 000000 00 00000 01346666676 4689
Q ss_pred CCCEEEEcccCCh--------HHHHHHHHHHHhhCCCCcEEEecCCCCCHH---HHhc-ccCC-------CCCEEEEecC
Q 004892 387 DVDMVIEAVIESV--------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVGE-KTSS-------QDRIIGAHFF 447 (724)
Q Consensus 387 ~aDlVIeav~e~~--------~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~-~~~~-------~~r~ig~h~~ 447 (724)
+||+||.|||.+. .....+.+.+.+.++++++|+. +|+.++. ++.. .... ..-.+..+|
T Consensus 76 ~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~-~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~P- 153 (411)
T TIGR03026 76 DADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVL-ESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNP- 153 (411)
T ss_pred hCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEE-eCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECC-
Confidence 9999999999764 3456677888888888887764 4444332 3321 1111 111233333
Q ss_pred CCCCCCC--e-------eeEecCCCCCHHHHHHHHHHHHHcC-CeeEEEcCCC-----chhhhhh---hhHHHHHHHHHH
Q 004892 448 SPAHVMP--L-------LEIVRTERTSAQVILDLMTVGKIIK-KVPVVVGNCT-----GFAVNRA---FFPYSQSARLLV 509 (724)
Q Consensus 448 ~p~~~~~--l-------veii~~~~t~~e~~~~~~~l~~~lG-k~~v~v~d~p-----G~i~nRl---~~~~~~Ea~~l~ 509 (724)
....+ . .-++.| .+++..+.++++++.++ +.++++++.. .++.|-+ ..+++||+..+.
T Consensus 154 --e~~~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la 229 (411)
T TIGR03026 154 --EFLREGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARIC 229 (411)
T ss_pred --CcCCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111 1 124445 38999999999999998 5777776522 1333433 257889999998
Q ss_pred Hc-CCCHHHHHHHH
Q 004892 510 SL-GVDVFRIDSAI 522 (724)
Q Consensus 510 ~~-Gv~~~~ID~a~ 522 (724)
+. |+++.++-.++
T Consensus 230 ~~~GiD~~~v~~~~ 243 (411)
T TIGR03026 230 EALGIDVYEVIEAA 243 (411)
T ss_pred HHhCCCHHHHHHHh
Confidence 77 99999988887
No 164
>PLN02256 arogenate dehydrogenase
Probab=99.35 E-value=1.3e-11 Score=130.15 Aligned_cols=153 Identities=11% Similarity=0.026 Sum_probs=111.7
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc-Cc-
Q 004892 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EF- 385 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~- 385 (724)
.+||+|||+|.||.++|..|.+.|++|++||+++.. +.+. +.| +...++.+ .+
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~-----------~~g-------------v~~~~~~~e~~~ 90 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAA-----------ELG-------------VSFFRDPDDFCE 90 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHH-----------HcC-------------CeeeCCHHHHhh
Confidence 468999999999999999999999999999998632 1111 111 11123332 23
Q ss_pred CCCCEEEEcccCChHHHHHHHHHH-HhhCCCCcEEEecCCC--CCHHHHhcccCCCCCEEEEecCCCCCCCC------ee
Q 004892 386 KDVDMVIEAVIESVPLKQKIFSEL-EKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAHVMP------LL 456 (724)
Q Consensus 386 ~~aDlVIeav~e~~~~k~~v~~~l-~~~~~~~~ii~s~ts~--~~~~~~~~~~~~~~r~ig~h~~~p~~~~~------lv 456 (724)
.++|+||.|+| +....+++.++ ...++++++|++.+|+ .++..+...++...+|++.||+.++.... .+
T Consensus 91 ~~aDvVilavp--~~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~ 168 (304)
T PLN02256 91 EHPDVVLLCTS--ILSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPF 168 (304)
T ss_pred CCCCEEEEecC--HHHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeE
Confidence 46999999999 66778888888 5678899999887774 45566666665555799999987775431 11
Q ss_pred eEecC----CCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004892 457 EIVRT----ERTSAQVILDLMTVGKIIKKVPVVVG 487 (724)
Q Consensus 457 eii~~----~~t~~e~~~~~~~l~~~lGk~~v~v~ 487 (724)
-+.+. +.++++.++.+.++++.+|..++.+.
T Consensus 169 ~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~ 203 (304)
T PLN02256 169 VYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMS 203 (304)
T ss_pred EEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 11221 56788999999999999999999883
No 165
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.31 E-value=2.6e-11 Score=134.87 Aligned_cols=188 Identities=16% Similarity=0.128 Sum_probs=124.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc----cCc
Q 004892 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SEF 385 (724)
Q Consensus 310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~~ 385 (724)
+|+|||+|.||.+||.+|+++|++|++|||++++++...+.. ..|. .+...++. +.+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~--------~~g~-----------~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEH--------AKGK-----------KIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhc--------cCCC-----------CceecCCHHHHHhhc
Confidence 489999999999999999999999999999999877653210 0010 01112222 234
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHH--hcccCCCCCEEEEecCCCCCCCCe------ee
Q 004892 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV--GEKTSSQDRIIGAHFFSPAHVMPL------LE 457 (724)
Q Consensus 386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~--~~~~~~~~r~ig~h~~~p~~~~~l------ve 457 (724)
+.+|+||.|||.+.. ..+++.++.+.+.++.+|++.+++.+.+.. ...+.. + |.||+..|..+.. .-
T Consensus 62 ~~~dvIil~v~~~~~-v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~--~--gi~fvdapVsGG~~gA~~G~~ 136 (467)
T TIGR00873 62 ERPRKIMLMVKAGAP-VDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKA--K--GILFVGSGVSGGEEGARKGPS 136 (467)
T ss_pred CCCCEEEEECCCcHH-HHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHh--c--CCEEEcCCCCCCHHHHhcCCc
Confidence 679999999996544 456778898999999998876655544322 222221 1 4566543322211 12
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCee------EEEcCC-Cch---hh-hhhhhHH---HHHHHHHHH--cCCCHHHHHHH
Q 004892 458 IVRTERTSAQVILDLMTVGKIIKKVP------VVVGNC-TGF---AV-NRAFFPY---SQSARLLVS--LGVDVFRIDSA 521 (724)
Q Consensus 458 ii~~~~t~~e~~~~~~~l~~~lGk~~------v~v~d~-pG~---i~-nRl~~~~---~~Ea~~l~~--~Gv~~~~ID~a 521 (724)
++.|. ++++++.++++++.++..+ .++++. .|. ++ |-+.+.+ +.|++.+++ .|++++++-.+
T Consensus 137 im~GG--~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v 214 (467)
T TIGR00873 137 IMPGG--SAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEV 214 (467)
T ss_pred CCCCC--CHHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 33332 7899999999999999874 677753 222 23 4444433 359999874 58999998888
Q ss_pred HH
Q 004892 522 IR 523 (724)
Q Consensus 522 ~~ 523 (724)
+.
T Consensus 215 ~~ 216 (467)
T TIGR00873 215 FT 216 (467)
T ss_pred HH
Confidence 84
No 166
>PLN02858 fructose-bisphosphate aldolase
Probab=99.31 E-value=2.1e-11 Score=151.16 Aligned_cols=187 Identities=16% Similarity=0.092 Sum_probs=131.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004892 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (724)
-+||+|||+|.||.+||.+|+++||+|++|||++++.++..+ .| ....++. +.++
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~-----------~G-------------a~~~~s~~e~a~ 59 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCE-----------LG-------------GHRCDSPAEAAK 59 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------cC-------------CeecCCHHHHHh
Confidence 368999999999999999999999999999999998776432 22 1122333 6678
Q ss_pred CCCEEEEcccCChHHHHHHH--HHHHhhCCCCcEEEecCCCCCHH---HHhcccCCCCCEEE--EecCCCCC--------
Q 004892 387 DVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIG--AHFFSPAH-------- 451 (724)
Q Consensus 387 ~aDlVIeav~e~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~~~r~ig--~h~~~p~~-------- 451 (724)
+||+||.|+|++..++..++ ..+.+.+.++.+++. +|++.+. +++..+... | .+|.+.|.
T Consensus 60 ~advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd-~STi~p~~~~~la~~l~~~----g~~~~~lDaPVsGg~~~A~ 134 (1378)
T PLN02858 60 DAAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILI-RSTILPLQLQKLEKKLTER----KEQIFLVDAYVSKGMSDLL 134 (1378)
T ss_pred cCCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEE-CCCCCHHHHHHHHHHHHhc----CCceEEEEccCcCCHHHHh
Confidence 89999999998877766555 346677788887764 4455544 333333322 3 45554332
Q ss_pred CCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEE-cCC-Cc---hhhhhhhh----HHHHHHHHHHHc-CCCHHHHHHH
Q 004892 452 VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV-GNC-TG---FAVNRAFF----PYSQSARLLVSL-GVDVFRIDSA 521 (724)
Q Consensus 452 ~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v-~d~-pG---~i~nRl~~----~~~~Ea~~l~~~-Gv~~~~ID~a 521 (724)
.+.+.-++.| +++++++++++++.+|+.++++ ++. .| .++|.++. ..+.|++.+.+. |++++.+-.+
T Consensus 135 ~G~L~imvGG---~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~v 211 (1378)
T PLN02858 135 NGKLMIIASG---RSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDI 211 (1378)
T ss_pred cCCeEEEEcC---CHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 3344445555 6889999999999999988865 652 22 24455543 334599988866 9999999888
Q ss_pred H-HhcC
Q 004892 522 I-RSFG 526 (724)
Q Consensus 522 ~-~~~g 526 (724)
+ .+.|
T Consensus 212 l~~s~g 217 (1378)
T PLN02858 212 ISNAAG 217 (1378)
T ss_pred HhcCCc
Confidence 8 5554
No 167
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.31 E-value=6.7e-12 Score=120.35 Aligned_cols=129 Identities=17% Similarity=0.265 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEECcccc
Q 004892 31 PIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL 110 (724)
Q Consensus 31 ~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~ 110 (724)
.+.+.+.+.|+.++.+..+ .+.|.+.|+...+ ...++ +.|..++||||+.++|.|.
T Consensus 15 ~~~~~~~~~l~~~~~~~~i-~l~inspGG~~~~----------------------~~~i~-~~i~~~~~pvi~~v~g~a~ 70 (160)
T cd07016 15 VTAKEFKDALDALGDDSDI-TVRINSPGGDVFA----------------------GLAIY-NALKRHKGKVTVKIDGLAA 70 (160)
T ss_pred cCHHHHHHHHHhccCCCCE-EEEEECCCCCHHH----------------------HHHHH-HHHHhcCCCEEEEEcchHH
Confidence 4677888888888877443 3444544432211 12445 6688899999999999999
Q ss_pred chhHHHHhhcCEEEEeCCceeeCcccccCccCCcc---------------hhhhhccccc--HHHHHHHHHcCCCCCHHH
Q 004892 111 GGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFG---------------GTQRLPRLVG--LSKAIEMMLLSKSITSEE 173 (724)
Q Consensus 111 GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g---------------~~~~l~r~~G--~~~a~~l~ltg~~i~a~e 173 (724)
|+|+.++++||+|+++++++|+++....+..+... ....+.+..| .....+++.++..++++|
T Consensus 71 s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~e 150 (160)
T cd07016 71 SAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQE 150 (160)
T ss_pred hHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHH
Confidence 99999999999999999999999877666544322 1223667778 678888888888999999
Q ss_pred HHHCCCccee
Q 004892 174 GWKLGLIDAV 183 (724)
Q Consensus 174 A~~~Glv~~v 183 (724)
|+++||||+|
T Consensus 151 A~~~GliD~v 160 (160)
T cd07016 151 AVELGFADEI 160 (160)
T ss_pred HHHcCCCCcC
Confidence 9999999986
No 168
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.31 E-value=1.4e-11 Score=123.31 Aligned_cols=153 Identities=22% Similarity=0.292 Sum_probs=109.1
Q ss_pred EEEEEeCCCCCCCCC---HHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHH
Q 004892 15 VAIITLINPPVNALA---IPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV 91 (724)
Q Consensus 15 v~~i~l~~p~~Nal~---~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 91 (724)
|++|.++.+ ++ +.++.+|.++++.++.|+++++|||++ +|.|+|+.... ...+.+
T Consensus 2 v~vi~i~g~----i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~----~s~Gg~~~~~~-------------~i~~~i- 59 (208)
T cd07023 2 IAVIDIEGT----ISDGGGIGADSLIEQLRKAREDDSVKAVVLRI----NSPGGSVVASE-------------EIYREI- 59 (208)
T ss_pred EEEEEEEEE----EcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEE----ECCCCCHHHHH-------------HHHHHH-
Confidence 566777654 33 779999999999999999999999987 57899886531 122344
Q ss_pred HHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccc------------cCccCCcchh------------
Q 004892 92 NLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPGFGGT------------ 147 (724)
Q Consensus 92 ~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~G~~P~~g~~------------ 147 (724)
+.+..++|||||+++|.|.|+|+.|+++||++++++++.|+..-+. +|+-+..-.+
T Consensus 60 ~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~ 139 (208)
T cd07023 60 RRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRP 139 (208)
T ss_pred HHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCC
Confidence 5578889999999999999999999999999999999988643222 3332211100
Q ss_pred ------hhhccc-----------------ccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHH
Q 004892 148 ------QRLPRL-----------------VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190 (724)
Q Consensus 148 ------~~l~r~-----------------~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~ 190 (724)
..+..+ +.... .+-+..|..+++++|++.||||.+...++..
T Consensus 140 ~s~~~~e~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~~~~~~a~~A~~~gLiD~i~~~~~~~ 204 (208)
T cd07023 140 LTEEERAILQALVDDIYDQFVDVVAEGRGMSGER-LDKLADGRVWTGRQALELGLVDELGGLDDAI 204 (208)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHhcCCcEEEHHHHHHcCCCcccCCHHHHH
Confidence 000011 11111 2335678899999999999999998655543
No 169
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.26 E-value=5.5e-11 Score=118.83 Aligned_cols=154 Identities=26% Similarity=0.335 Sum_probs=107.7
Q ss_pred EEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHH
Q 004892 15 VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI 94 (724)
Q Consensus 15 v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (724)
|++|+++.+ ++ ...++|.++|+.+..|+++++|||+.. |.|+++... ..+. +.|
T Consensus 2 v~vi~i~g~----i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~~----------------~~l~-~~i 55 (207)
T TIGR00706 2 IAILPVSGA----IA-VSPEDFDKKIKRIKDDKSIKALLLRIN----SPGGTVVAS----------------EEIY-EKL 55 (207)
T ss_pred EEEEEEEEE----Ee-cCHHHHHHHHHHHhhCCCccEEEEEec----CCCCCHHHH----------------HHHH-HHH
Confidence 566666554 21 235789999999999999999999863 677776532 2233 456
Q ss_pred hcCC--CcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccc------------cCccCC---------cc-----h
Q 004892 95 EDCK--KPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPG---------FG-----G 146 (724)
Q Consensus 95 ~~~~--kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~G~~P~---------~g-----~ 146 (724)
..++ ||+||.++|.|.|+|+.|+++||.++|++++.|+.-.+. +|+-+. .+ .
T Consensus 56 ~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~ 135 (207)
T TIGR00706 56 KKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTREL 135 (207)
T ss_pred HHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCC
Confidence 6666 999999999999999999999999999999987653332 233210 00 0
Q ss_pred h----hhh-----------------cccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHH
Q 004892 147 T----QRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRL 195 (724)
Q Consensus 147 ~----~~l-----------------~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~ 195 (724)
+ ..+ .|-+......+ +..|+.+++++|++.||||++...+++.+...+
T Consensus 136 s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~-~~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~~~ 204 (207)
T TIGR00706 136 TPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKK-FADGRVFTGRQALKLRLVDKLGTEDDALKWLAE 204 (207)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH-HhcCCcccHHHHHHcCCCcccCCHHHHHHHHHH
Confidence 0 001 12223233333 467899999999999999999987777655443
No 170
>PRK07680 late competence protein ComER; Validated
Probab=99.25 E-value=1.5e-10 Score=121.11 Aligned_cols=182 Identities=12% Similarity=0.072 Sum_probs=124.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC----cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cC
Q 004892 310 KVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (724)
Q Consensus 310 kI~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (724)
||+|||+|.||.+++..|.++|+ +|++|+|++++.+...+. ...+..+.+. +.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~----------------------~~g~~~~~~~~~~ 59 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKER----------------------YPGIHVAKTIEEV 59 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHH----------------------cCCeEEECCHHHH
Confidence 69999999999999999999994 799999999876543210 0012233343 45
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeee-EecCCC
Q 004892 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTER 463 (724)
Q Consensus 385 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lve-ii~~~~ 463 (724)
+.+||+||.|++ +....++++++.+++.++++|++.+++.++..+...+. .+.+..++..|......+. ++.+..
T Consensus 60 ~~~aDiVilav~--p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~--~~~~r~~p~~~~~~~~G~t~~~~g~~ 135 (273)
T PRK07680 60 ISQSDLIFICVK--PLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVP--CQVARIIPSITNRALSGASLFTFGSR 135 (273)
T ss_pred HHhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCEEEECCChHHHHhhccEEEeeCCC
Confidence 789999999998 77778889999888888888888888888888887664 3455566644322212222 335666
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEcCC------------CchhhhhhhhHHHHHHHHHHH-cCCCHHHHHHHH
Q 004892 464 TSAQVILDLMTVGKIIKKVPVVVGNC------------TGFAVNRAFFPYSQSARLLVS-LGVDVFRIDSAI 522 (724)
Q Consensus 464 t~~e~~~~~~~l~~~lGk~~v~v~d~------------pG~i~nRl~~~~~~Ea~~l~~-~Gv~~~~ID~a~ 522 (724)
.+++..+.+.+++..+|. ++.+.+. |.|+.| ++.++...+ ++ .|++.++..+++
T Consensus 136 ~~~~~~~~~~~ll~~~G~-~~~i~e~~~~~~~~l~gs~pa~~~~-~~~al~~~~---~~~~Gl~~~~a~~~~ 202 (273)
T PRK07680 136 CSEEDQQKLERLFSNIST-PLVIEEDITRVSSDIVSCGPAFFSY-LLQRFIDAA---VEETNISKEEATTLA 202 (273)
T ss_pred CCHHHHHHHHHHHHcCCC-EEEEChHhcchhhhhccchHHHHHH-HHHHHHHHH---HHhcCCCHHHHHHHH
Confidence 688889999999999995 4455432 112222 122233333 34 588888766665
No 171
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.25 E-value=8.1e-11 Score=119.96 Aligned_cols=152 Identities=15% Similarity=0.152 Sum_probs=127.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCC----CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-
Q 004892 308 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~G----~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 382 (724)
++||+|||+|+||.+|+..|.++| .+|++.+++++..+...++ ++... +++.
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~----------------------~g~~~-~~~~~ 57 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAE----------------------YGVVT-TTDNQ 57 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHH----------------------cCCcc-cCcHH
Confidence 368999999999999999999999 5899999999987643221 11112 3333
Q ss_pred cCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEec-C
Q 004892 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVR-T 461 (724)
Q Consensus 383 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~-~ 461 (724)
+.+.++|+||.||. ++...+++.++.+ ..++.+|+|...+++++.+...+. ..+++...|+.|...+..+..+. +
T Consensus 58 ~~~~~advv~LavK--Pq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t~i~~~ 133 (266)
T COG0345 58 EAVEEADVVFLAVK--PQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVTAISAN 133 (266)
T ss_pred HHHhhCCEEEEEeC--hHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcceeeecC
Confidence 67788999999997 8889999999988 778899999999999999999998 77899999999998888888775 5
Q ss_pred CCCCHHHHHHHHHHHHHcCCeeEEE
Q 004892 462 ERTSAQVILDLMTVGKIIKKVPVVV 486 (724)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lGk~~v~v 486 (724)
...+++..+.+..+++.+|+...+-
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~v~~v~ 158 (266)
T COG0345 134 ANVSEEDKAFVEALLSAVGKVVEVE 158 (266)
T ss_pred ccCCHHHHHHHHHHHHhcCCeEEec
Confidence 7789999999999999999887653
No 172
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.25 E-value=1.9e-10 Score=121.26 Aligned_cols=186 Identities=13% Similarity=0.058 Sum_probs=127.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (724)
++|+|||.|.||.++|..|...|++|++++++.++..... .+.| +...+..++++.|
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A----------~~~G-------------~~~~s~~eaa~~A 74 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKA----------EADG-------------FEVLTVAEAAKWA 74 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHH----------HHCC-------------CeeCCHHHHHhcC
Confidence 6899999999999999999999999999888755432211 0111 1122222668899
Q ss_pred CEEEEcccCChHHHHHHH-HHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCC-------CCCeeeEe-
Q 004892 389 DMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH-------VMPLLEIV- 459 (724)
Q Consensus 389 DlVIeav~e~~~~k~~v~-~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~-------~~~lveii- 459 (724)
|+|+.+||.. ....++ +++.+.++++++| +..++..+.......+...+++-+.|..|.+ .+..+...
T Consensus 75 DVVvLaVPd~--~~~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~ 151 (330)
T PRK05479 75 DVIMILLPDE--VQAEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLI 151 (330)
T ss_pred CEEEEcCCHH--HHHHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEE
Confidence 9999999943 337787 7799999999988 7788888887766555556788888988887 44444433
Q ss_pred -cCCCCCHHHHHHHHHHHHHcCCeeE-----EEcC-C-Cchhhhh-----hhhHHHHHHHHHH-HcCCCHHHHHH
Q 004892 460 -RTERTSAQVILDLMTVGKIIKKVPV-----VVGN-C-TGFAVNR-----AFFPYSQSARLLV-SLGVDVFRIDS 520 (724)
Q Consensus 460 -~~~~t~~e~~~~~~~l~~~lGk~~v-----~v~d-~-pG~i~nR-----l~~~~~~Ea~~l~-~~Gv~~~~ID~ 520 (724)
.....+.+..+.+..++..+|.++. ..++ . .-..-.+ -+..++..+...+ +.|++|+.-.-
T Consensus 152 av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay~ 226 (330)
T PRK05479 152 AVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMAYF 226 (330)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 3445578999999999999998865 2322 1 1111111 1234555555444 55888776443
No 173
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.25 E-value=7.1e-11 Score=128.80 Aligned_cols=197 Identities=16% Similarity=0.170 Sum_probs=118.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCCC
Q 004892 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV 388 (724)
Q Consensus 310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~a 388 (724)
||+|||+|.||.++|..++. ||+|++||+++++++.+.+.+....+..++. .......++..+++. +++++|
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~------~l~~~~~~l~~t~~~~~~~~~a 74 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQ------FLQSDKIHFNATLDKNEAYRDA 74 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHH------HHHhCCCcEEEecchhhhhcCC
Confidence 79999999999999988875 9999999999999888765321111111110 000011345455554 567999
Q ss_pred CEEEEcccCCh---------HHHHHHHHHHHhhCCCCcEEEecCCCCCHH---HHhcccCCCCCEEEEecCCCCCCCCee
Q 004892 389 DMVIEAVIESV---------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHVMPLL 456 (724)
Q Consensus 389 DlVIeav~e~~---------~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~~~r~ig~h~~~p~~~~~lv 456 (724)
|+||+|||++. ....++.+.+.+ ++++.+|+. .||.++. ++...+. +. ++.| +|....+.-
T Consensus 75 d~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~-~STv~pgtt~~l~~~~~--~~--~v~~-~PE~l~~G~ 147 (388)
T PRK15057 75 DYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVI-KSTVPVGFTAAMHKKYR--TE--NIIF-SPEFLREGK 147 (388)
T ss_pred CEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEE-eeecCCchHHHHHHHhh--cC--cEEE-CcccccCCc
Confidence 99999999874 344566677776 577777653 3444433 3333221 11 2222 333222111
Q ss_pred ---------eEecCCCCCHHHHHHHHHHHHH--cCCeeE-EEcCC-----Cchhhhhhh---hHHHHHHHHHHHc-CCCH
Q 004892 457 ---------EIVRTERTSAQVILDLMTVGKI--IKKVPV-VVGNC-----TGFAVNRAF---FPYSQSARLLVSL-GVDV 515 (724)
Q Consensus 457 ---------eii~~~~t~~e~~~~~~~l~~~--lGk~~v-~v~d~-----pG~i~nRl~---~~~~~Ea~~l~~~-Gv~~ 515 (724)
-++-|. +++..+.+.+++.. ++..+. ++.+. .-++.|-++ .+++||...+.+. |+++
T Consensus 148 a~~d~~~p~rvv~G~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~ 225 (388)
T PRK15057 148 ALYDNLHPSRIVIGE--RSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNT 225 (388)
T ss_pred ccccccCCCEEEEEc--CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCH
Confidence 133332 34556777777754 554433 44432 113334332 4788999888877 9999
Q ss_pred HHHHHHH
Q 004892 516 FRIDSAI 522 (724)
Q Consensus 516 ~~ID~a~ 522 (724)
.++-+++
T Consensus 226 ~eV~~a~ 232 (388)
T PRK15057 226 RQIIEGV 232 (388)
T ss_pred HHHHHHh
Confidence 9988887
No 174
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.25 E-value=1e-12 Score=145.17 Aligned_cols=160 Identities=16% Similarity=0.152 Sum_probs=121.2
Q ss_pred eEEEEcCCCCcHHHHH--HH----HHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-
Q 004892 310 KVAVIGGGLMGSGIAT--AH----ILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (724)
Q Consensus 310 kI~VIG~G~mG~~iA~--~l----a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 382 (724)
||+|||+|.||.+.+. .+ +.+|++|++||++++.++.....+++.+... . ...++..++|+
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~----~--------~~~~I~~ttD~~ 69 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEEL----G--------APLKIEATTDRR 69 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhc----C--------CCeEEEEeCCHH
Confidence 7999999999998666 23 4568899999999999888666554433211 1 11467778886
Q ss_pred cCcCCCCEEEEccc----------CChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCC--CCCEEEEecCCCC
Q 004892 383 SEFKDVDMVIEAVI----------ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSS--QDRIIGAHFFSPA 450 (724)
Q Consensus 383 ~~~~~aDlVIeav~----------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~--~~r~ig~h~~~p~ 450 (724)
+++++||+||++++ |+...|..+++++.+.+.+++++.+++|...+.+++..+.. | +++.+||.||+
T Consensus 70 eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~tNPv 148 (423)
T cd05297 70 EALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYANPM 148 (423)
T ss_pred HHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcCChH
Confidence 78999999999998 35888999999999999999999999999999999988763 6 89999999999
Q ss_pred CCC-----CeeeEecCCCCCHHHHHHHHHHHHHcCCee
Q 004892 451 HVM-----PLLEIVRTERTSAQVILDLMTVGKIIKKVP 483 (724)
Q Consensus 451 ~~~-----~lveii~~~~t~~e~~~~~~~l~~~lGk~~ 483 (724)
..+ +..+ ++.-++...+......+.+.+|..+
T Consensus 149 ~i~t~~~~k~~~-~rviG~c~~~~~~~~~~a~~l~~~~ 185 (423)
T cd05297 149 AELTWALNRYTP-IKTVGLCHGVQGTAEQLAKLLGEPP 185 (423)
T ss_pred HHHHHHHHHhCC-CCEEEECCcHHHHHHHHHHHhCCCH
Confidence 666 3333 2222222235666667777888643
No 175
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.24 E-value=7.8e-11 Score=126.55 Aligned_cols=144 Identities=13% Similarity=0.097 Sum_probs=106.9
Q ss_pred ceEEEEcC-CCCcHHHHHHHHH-CCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004892 309 RKVAVIGG-GLMGSGIATAHIL-NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (724)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~la~-~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (724)
++|+|||. |.||+++|..|.+ .|++|+.+|++.+. .++. +.+
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~-----------------------------------~~~~~~~v 49 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG-----------------------------------SLDPATLL 49 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc-----------------------------------cCCHHHHh
Confidence 58999999 9999999999986 48999999985221 1111 457
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhh---CCCCcEEEecCCCCC--HHHHhcccCCCCCEEEEecCCCCCC-----CCe
Q 004892 386 KDVDMVIEAVIESVPLKQKIFSELEKA---CPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAHV-----MPL 455 (724)
Q Consensus 386 ~~aDlVIeav~e~~~~k~~v~~~l~~~---~~~~~ii~s~ts~~~--~~~~~~~~~~~~r~ig~h~~~p~~~-----~~l 455 (724)
++||+||.|+| .....++++++.++ ++++++|++.+|+.. +..+ .....+|+|.||+..+.. +..
T Consensus 50 ~~aDlVilavP--v~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~~~~~~fVG~HPMaG~E~s~lf~g~~ 124 (370)
T PRK08818 50 QRADVLIFSAP--IRHTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM---LASQAEVVGLHPMTAPPKSPTLKGRV 124 (370)
T ss_pred cCCCEEEEeCC--HHHHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH---HhcCCCEEeeCCCCCCCCCcccCCCe
Confidence 89999999999 88889999999876 689999987777653 2332 233346999999877653 333
Q ss_pred eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc-CCCchhh
Q 004892 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVG-NCTGFAV 494 (724)
Q Consensus 456 veii~~~~t~~e~~~~~~~l~~~lGk~~v~v~-d~pG~i~ 494 (724)
+.+++. ..++.++.++.+++.+|..++.+. +.+-.++
T Consensus 125 ~iltp~--~~~~~~~~v~~l~~~~Ga~v~~~~aeeHD~~~ 162 (370)
T PRK08818 125 MVVCEA--RLQHWSPWVQSLCSALQAECVYATPEHHDRVM 162 (370)
T ss_pred EEEeCC--CchhHHHHHHHHHHHcCCEEEEcCHHHHHHHH
Confidence 445554 345568899999999999999883 3343333
No 176
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.24 E-value=1e-10 Score=122.51 Aligned_cols=153 Identities=14% Similarity=0.043 Sum_probs=121.2
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCC----CcEEEEeCCHHH-HHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc
Q 004892 308 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~G----~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (724)
|.||+|||+|.||.+++..|.++| ++|++|+++++. ++.... . ...+..+++.
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~----------~------------~~~~~~~~~~ 58 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYD----------K------------YPTVELADNE 58 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHH----------H------------cCCeEEeCCH
Confidence 468999999999999999999998 789999987542 222110 0 0112223343
Q ss_pred -cCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEec-
Q 004892 383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVR- 460 (724)
Q Consensus 383 -~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~- 460 (724)
+.++++|+||.|+| ++...++++++.+.++++++|+|...++++.++...++. .+++.+.|+.|...+..+..+.
T Consensus 59 ~e~~~~aDvVilavp--p~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~~~~ 135 (277)
T PRK06928 59 AEIFTKCDHSFICVP--PLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSLVAH 135 (277)
T ss_pred HHHHhhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEEEec
Confidence 45789999999999 777889999998888888888999999999999987753 4799999999888887777664
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeeEE
Q 004892 461 TERTSAQVILDLMTVGKIIKKVPVV 485 (724)
Q Consensus 461 ~~~t~~e~~~~~~~l~~~lGk~~v~ 485 (724)
++..+++..+.++.++..+|+...+
T Consensus 136 ~~~~~~~~~~~v~~l~~~~G~~~~v 160 (277)
T PRK06928 136 AETVNEANKSRLEETLSHFSHVMTI 160 (277)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 5677899999999999999988754
No 177
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.24 E-value=2e-10 Score=123.59 Aligned_cols=197 Identities=17% Similarity=0.157 Sum_probs=121.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004892 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (724)
|+||+|||+|.||+.+|..|+++|++|++||++++.++...+..... ... .+ . .....+..+++. +.++
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~--~~~-~~-~------~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENP--RYL-PG-I------KLPDNLRATTDLAEALA 70 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCccc--ccC-CC-C------cCCCCeEEeCCHHHHHh
Confidence 35899999999999999999999999999999998877654311000 000 00 0 001123444555 4678
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH-------HHhcccCCCCCEEEEecCCCCC-------C
Q 004892 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-------IVGEKTSSQDRIIGAHFFSPAH-------V 452 (724)
Q Consensus 387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-------~~~~~~~~~~r~ig~h~~~p~~-------~ 452 (724)
+||+||.|+| .....+++.++.+.+++++++++.++++... .+.......... .....|.. .
T Consensus 71 ~~D~vi~~v~--~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~--~~~~~P~~~~~~~~g~ 146 (325)
T PRK00094 71 DADLILVAVP--SQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPI--AVLSGPSFAKEVARGL 146 (325)
T ss_pred CCCEEEEeCC--HHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCce--EEEECccHHHHHHcCC
Confidence 9999999999 4567888899999888999887766554432 222222110111 11112221 1
Q ss_pred CCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchh----------------------hhhh---hhHHHHHHHH
Q 004892 453 MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFA----------------------VNRA---FFPYSQSARL 507 (724)
Q Consensus 453 ~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG~i----------------------~nRl---~~~~~~Ea~~ 507 (724)
..++.+ .+ .+.+.++.+.++++..|..+....+..|.. .|.+ ....++|++.
T Consensus 147 ~~~~~~-~~--~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~ 223 (325)
T PRK00094 147 PTAVVI-AS--TDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITR 223 (325)
T ss_pred CcEEEE-Ee--CCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence 122222 22 368899999999999998777666644421 1222 2344457777
Q ss_pred HHHc-CCCHHHHHHH
Q 004892 508 LVSL-GVDVFRIDSA 521 (724)
Q Consensus 508 l~~~-Gv~~~~ID~a 521 (724)
+.+. |++++.+...
T Consensus 224 la~~~G~d~~~~~~~ 238 (325)
T PRK00094 224 LGVALGANPETFLGL 238 (325)
T ss_pred HHHHhCCChhhhhcc
Confidence 7655 7777666443
No 178
>PLN02858 fructose-bisphosphate aldolase
Probab=99.24 E-value=6.4e-11 Score=146.86 Aligned_cols=190 Identities=18% Similarity=0.202 Sum_probs=129.5
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004892 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (724)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (724)
..++|+|||+|.||.+||.+|+++|++|++||+++++++... +.|. . ..++. +.+
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~Ga------------~-~~~s~~e~~ 378 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFE-----------NAGG------------L-AGNSPAEVA 378 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcCC------------e-ecCCHHHHH
Confidence 358899999999999999999999999999999998876542 1121 1 12233 567
Q ss_pred CCCCEEEEcccCChHHHHHHHH--HHHhhCCCCcEEEecCCCCCHH---HHhcccCCCCCEEEEecCCCC--------CC
Q 004892 386 KDVDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPA--------HV 452 (724)
Q Consensus 386 ~~aDlVIeav~e~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~~~r~ig~h~~~p~--------~~ 452 (724)
++||+||.|||++.++...++. .+.+.+.++.+++. +|+.++. +++..+... -.|.+|.+.| ..
T Consensus 379 ~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd-~STvsP~~~~~la~~l~~~--g~g~~~lDAPVsGg~~~A~~ 455 (1378)
T PLN02858 379 KDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIVL-SSTVSPGFVIQLERRLENE--GRDIKLVDAPVSGGVKRAAM 455 (1378)
T ss_pred hcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHhh--CCCcEEEEccCCCChhhhhc
Confidence 8999999999977776655543 35666778887764 4444443 333333220 1256665544 22
Q ss_pred CCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc-----hhhhhhh----hHHHHHHHHHHHc-CCCHHHHHHHH
Q 004892 453 MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG-----FAVNRAF----FPYSQSARLLVSL-GVDVFRIDSAI 522 (724)
Q Consensus 453 ~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG-----~i~nRl~----~~~~~Ea~~l~~~-Gv~~~~ID~a~ 522 (724)
+.+.-++.| +++.+++++++++.+|+.+++++..+| .++|.++ .+.+.|++.+.+. |++++.+-+++
T Consensus 456 G~L~imvgG---~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl 532 (1378)
T PLN02858 456 GTLTIMASG---TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDII 532 (1378)
T ss_pred CCceEEEEC---CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 233334444 688999999999999998877644345 2445553 3445699988866 99999988877
Q ss_pred -HhcC
Q 004892 523 -RSFG 526 (724)
Q Consensus 523 -~~~g 526 (724)
.+.|
T Consensus 533 ~~s~g 537 (1378)
T PLN02858 533 SNAGG 537 (1378)
T ss_pred Hhhcc
Confidence 5544
No 179
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.23 E-value=6.2e-10 Score=116.29 Aligned_cols=203 Identities=18% Similarity=0.144 Sum_probs=133.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHH---HHHhhcCcccccCccCc
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK---ANNALKMLKGVLDYSEF 385 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~---~~~~~~~i~~~~~~~~~ 385 (724)
.+|+|||+|.+|.++|..++++|++|+.+|+|+.+++......... .+ .+.++ .....+++++|++.+.+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i----~e---~~~~~~v~~~v~~g~lraTtd~~~l 82 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYI----EE---PDLDEVVKEAVESGKLRATTDPEEL 82 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCccee----ec---CcHHHHHHHHHhcCCceEecChhhc
Confidence 7899999999999999999999999999999999988764321000 00 01111 11122578889999999
Q ss_pred CCCCEEEEcccC--------ChHHHHHHHHHHHhhCCCCcEEEecCCCCCH--HHHhcc-------cCCCCCEEEEecCC
Q 004892 386 KDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEK-------TSSQDRIIGAHFFS 448 (724)
Q Consensus 386 ~~aDlVIeav~e--------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~-------~~~~~r~ig~h~~~ 448 (724)
+.||++|.|||. |+.......+.|.++++++.+++.-+++.|- +++... +..+..|.-.| .
T Consensus 83 ~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~lay--s 160 (436)
T COG0677 83 KECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAY--S 160 (436)
T ss_pred ccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEee--C
Confidence 999999999985 5566777788899999999988754444332 223221 22222332222 3
Q ss_pred CCCCCCe---ee------EecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC----chhh-h--h-hhhHHHHHHHHHHHc
Q 004892 449 PAHVMPL---LE------IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCT----GFAV-N--R-AFFPYSQSARLLVSL 511 (724)
Q Consensus 449 p~~~~~l---ve------ii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~p----G~i~-n--R-l~~~~~~Ea~~l~~~ 511 (724)
|-+.+|. .| ++.| .+++..+.+..|++.+=+..+.+.+.. --+. | | +-.++.||-..+.++
T Consensus 161 PERv~PG~~~~el~~~~kVIgG--~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~ 238 (436)
T COG0677 161 PERVLPGNVLKELVNNPKVIGG--VTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNA 238 (436)
T ss_pred ccccCCCchhhhhhcCCceeec--CCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 4333332 23 3333 379999999999999877766654422 1122 3 2 235888996666644
Q ss_pred -CCCHHHHHHHH
Q 004892 512 -GVDVFRIDSAI 522 (724)
Q Consensus 512 -Gv~~~~ID~a~ 522 (724)
|++..++=.+.
T Consensus 239 ~GIdvwevIeaA 250 (436)
T COG0677 239 MGIDVWEVIEAA 250 (436)
T ss_pred hCCcHHHHHHHh
Confidence 99887755554
No 180
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.22 E-value=1.6e-10 Score=121.36 Aligned_cols=198 Identities=19% Similarity=0.264 Sum_probs=134.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH----HHHHHhhHhcCCCCHHHHHHhhcCcccccCc-c
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (724)
+||+|||+|..|...+.+|+..||+|+.+|+++++++...... +..++.+++.+..+ +|+++|+|+ +
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~--------gRl~fTtd~~~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLAS--------GRLRFTTDYEE 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhcccc--------CcEEEEcCHHH
Confidence 4899999999999999999999999999999999999876542 33455555544322 579999999 5
Q ss_pred CcCCCCEEEEcccC--------ChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH---HHhcccC--CCCC-E-EEEe---
Q 004892 384 EFKDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTS--SQDR-I-IGAH--- 445 (724)
Q Consensus 384 ~~~~aDlVIeav~e--------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~--~~~r-~-ig~h--- 445 (724)
+++++|++|.||+. |......+.+++.++++..++|+ +-||.|+. .+...+. .+.+ | +.+.
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV-~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEF 151 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV-IKSTVPVGTTEEVRAKIREENSGKDFEVASNPEF 151 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE-EcCCCCCCchHHHHHHHHhhcccCCceEecChHH
Confidence 78999999999975 55577788899999998876665 45666653 2222111 1111 1 1111
Q ss_pred ---------cCCCCCCCCeeeEecCCCCCHHHHHHHHHHHHHc--CCeeEEEcCCC-----chhhhhhhh---HHHHHHH
Q 004892 446 ---------FFSPAHVMPLLEIVRTERTSAQVILDLMTVGKII--KKVPVVVGNCT-----GFAVNRAFF---PYSQSAR 506 (724)
Q Consensus 446 ---------~~~p~~~~~lveii~~~~t~~e~~~~~~~l~~~l--Gk~~v~v~d~p-----G~i~nRl~~---~~~~Ea~ 506 (724)
|++|..+ ++... ++++.+.+++++..+ ...|++..+.. -+..|-++. +++||..
T Consensus 152 LREG~Av~D~~~PdRI-----ViG~~--~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia 224 (414)
T COG1004 152 LREGSAVYDFLYPDRI-----VIGVR--SERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIA 224 (414)
T ss_pred hcCcchhhhccCCCeE-----EEccC--ChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2444433 34332 334566666666554 45566553322 345565553 7889988
Q ss_pred HHHHc-CCCHHHHHHHH
Q 004892 507 LLVSL-GVDVFRIDSAI 522 (724)
Q Consensus 507 ~l~~~-Gv~~~~ID~a~ 522 (724)
.+.+. |++..+|-..+
T Consensus 225 ~ice~~g~D~~~V~~gI 241 (414)
T COG1004 225 NICEKVGADVKQVAEGI 241 (414)
T ss_pred HHHHHhCCCHHHHHHHc
Confidence 88877 99999988876
No 181
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.21 E-value=1.1e-11 Score=128.47 Aligned_cols=167 Identities=17% Similarity=0.157 Sum_probs=111.9
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004892 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (724)
++||+|||+|.||+++|..|+++||+|++|.|+++.+++..... .-.+++....+ ...+.+++|+ ++++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~--~N~~yLp~i~l--------p~~l~at~Dl~~a~~ 70 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETR--ENPKYLPGILL--------PPNLKATTDLAEALD 70 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcC--cCccccCCccC--------CcccccccCHHHHHh
Confidence 36899999999999999999999999999999999988865431 11223332222 2567788888 5678
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH------HHHhcccCCCCCEEEEecCCCCCC-------C
Q 004892 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL------NIVGEKTSSQDRIIGAHFFSPAHV-------M 453 (724)
Q Consensus 387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~------~~~~~~~~~~~r~ig~h~~~p~~~-------~ 453 (724)
+||+|+.+|| .+..+++++++.+.+++++++++.+.++.. +++....-....+.. ...|.. .
T Consensus 71 ~ad~iv~avP--s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~v---LSGPs~A~EVa~g~ 145 (329)
T COG0240 71 GADIIVIAVP--SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAV---LSGPSFAKEVAQGL 145 (329)
T ss_pred cCCEEEEECC--hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEE---EECccHHHHHhcCC
Confidence 8999999999 999999999998899999999887766543 344333222122211 122211 1
Q ss_pred CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc
Q 004892 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 491 (724)
Q Consensus 454 ~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG 491 (724)
|...++.+ .+++..+.++.++..=-.++....|..|
T Consensus 146 pta~~vas--~d~~~a~~v~~~f~~~~Frvy~~~Dv~G 181 (329)
T COG0240 146 PTAVVVAS--NDQEAAEKVQALFSSPYFRVYTSTDVIG 181 (329)
T ss_pred CcEEEEec--CCHHHHHHHHHHhCCCcEEEEecCchhh
Confidence 11122222 3677777777777664444444456544
No 182
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.21 E-value=5.3e-10 Score=121.09 Aligned_cols=168 Identities=11% Similarity=0.061 Sum_probs=106.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCC-CC---HHHHHHhhcCcccccCcc
Q 004892 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LT---QDKANNALKMLKGVLDYS 383 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~---~~~~~~~~~~i~~~~~~~ 383 (724)
++||+|||+|.||+.+|..|+++|++|++||+++. .+...+ .|. +. ..+......++..+++.+
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~-----------~g~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRA-----------HGLTLTDYRGRDVRVPPSAIAFSTDPA 69 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHh-----------cCceeecCCCcceecccceeEeccChh
Confidence 46899999999999999999999999999999653 222111 110 00 000000112344555667
Q ss_pred CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH-HHhcccCCCCCEEEEecCCCCCCCCe-------
Q 004892 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRIIGAHFFSPAHVMPL------- 455 (724)
Q Consensus 384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-~~~~~~~~~~r~ig~h~~~p~~~~~l------- 455 (724)
+++++|+||+||+. ....++++++.+.++++++|++.++++... .+...+.....+.+.+++......+.
T Consensus 70 ~~~~~D~vil~vk~--~~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~ 147 (341)
T PRK08229 70 ALATADLVLVTVKS--AATADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTS 147 (341)
T ss_pred hccCCCEEEEEecC--cchHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCC
Confidence 78899999999984 345688899999999999888777777643 45555543222334444321111110
Q ss_pred eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCch
Q 004892 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF 492 (724)
Q Consensus 456 veii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG~ 492 (724)
-++.-+ ..+.++++.++++..|..+.+.+|.-+.
T Consensus 148 g~l~~~---~~~~~~~~~~~l~~~g~~~~~~~di~~~ 181 (341)
T PRK08229 148 GALAIE---ASPALRPFAAAFARAGLPLVTHEDMRAV 181 (341)
T ss_pred CceEec---CCchHHHHHHHHHhcCCCceecchhHHH
Confidence 011112 1245688999999999888888886543
No 183
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.20 E-value=4.4e-10 Score=116.67 Aligned_cols=179 Identities=11% Similarity=0.101 Sum_probs=124.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCc---EEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004892 310 KVAVIGGGLMGSGIATAHILNNIY---VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (724)
Q Consensus 310 kI~VIG~G~mG~~iA~~la~~G~~---V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (724)
||+|||+|.||.+|+..|.+.|++ +.+|++++++.+...+.+ .....+++. +.+
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~----------------------~~~~~~~~~~~~~ 59 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERF----------------------PKVRIAKDNQAVV 59 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHc----------------------CCceEeCCHHHHH
Confidence 799999999999999999999864 588999988765532210 112223344 456
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCC
Q 004892 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS 465 (724)
Q Consensus 386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~ 465 (724)
++||+||.|+| ++...+++.++. ..++.+|+|...+.++..+...+....+.+..||..|......+..+...
T Consensus 60 ~~aDvVilav~--p~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~--- 132 (258)
T PRK06476 60 DRSDVVFLAVR--PQIAEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPP--- 132 (258)
T ss_pred HhCCEEEEEeC--HHHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCC---
Confidence 78999999999 666678887762 45777888888899999999888765678888887766554444444332
Q ss_pred HHHHHHHHHHHHHcCCeeEEEcC--C------CchhhhhhhhHHHHHHHHHH-HcCCCHHHHHHHH
Q 004892 466 AQVILDLMTVGKIIKKVPVVVGN--C------TGFAVNRAFFPYSQSARLLV-SLGVDVFRIDSAI 522 (724)
Q Consensus 466 ~e~~~~~~~l~~~lGk~~v~v~d--~------pG~i~nRl~~~~~~Ea~~l~-~~Gv~~~~ID~a~ 522 (724)
.+.++++++.+|..+.+..+ . .++..| ++.++.++.... +.|+++++..+++
T Consensus 133 ---~~~~~~l~~~lG~~~~~~~e~~~d~~~a~~s~~a~--~~~~~~~~~~~~~~~Gl~~~~a~~~~ 193 (258)
T PRK06476 133 ---DPFVAALFDALGTAVECDSEEEYDLLAAASALMAT--YFGILETATGWLEEQGLKRQKARAYL 193 (258)
T ss_pred ---HHHHHHHHHhcCCcEEECChHhccceeehhccHHH--HHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 25889999999988764322 1 112222 223455665554 4589988877766
No 184
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.19 E-value=1.6e-10 Score=127.49 Aligned_cols=200 Identities=17% Similarity=0.131 Sum_probs=123.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (724)
+||+|||+|.||.++|.+|++ ||+|++||+++++++...+..... .+. ..++... .+++.++++.+.+++|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~----~e~---~~~~l~~-~g~l~~t~~~~~~~~a 77 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVN----LET---TEEELRE-ARYLKFTSEIEKIKEC 77 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCC----CCC---CHHHHHh-hCCeeEEeCHHHHcCC
Confidence 589999999999999999887 699999999999988754211000 000 0111111 2456777877788999
Q ss_pred CEEEEcccCCh--------HHHHHHHHHHHhhCCCCcEEEecCCCCCHH---HHh-cccCC------CCCEEEEecCCCC
Q 004892 389 DMVIEAVIESV--------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVG-EKTSS------QDRIIGAHFFSPA 450 (724)
Q Consensus 389 DlVIeav~e~~--------~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~-~~~~~------~~r~ig~h~~~p~ 450 (724)
|+||.|||.+. .......+.+.++++++.+|+. .||.++. ++. ..+.. -..|.-.| +|.
T Consensus 78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~-~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~--~PE 154 (425)
T PRK15182 78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVY-ESTVYPGCTEEECVPILARMSGMTFNQDFYVGY--SPE 154 (425)
T ss_pred CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEE-ecCCCCcchHHHHHHHHHhccCCCcCCCeeEee--CCC
Confidence 99999999652 2333334678888888887764 3333332 121 11111 11122221 222
Q ss_pred CCCC---------eeeEecCCCCCHHHHHHHHHHHHHcC-CeeEEEcC-CCc---hhhhhhh----hHHHHHHHHHHHc-
Q 004892 451 HVMP---------LLEIVRTERTSAQVILDLMTVGKIIK-KVPVVVGN-CTG---FAVNRAF----FPYSQSARLLVSL- 511 (724)
Q Consensus 451 ~~~~---------lveii~~~~t~~e~~~~~~~l~~~lG-k~~v~v~d-~pG---~i~nRl~----~~~~~Ea~~l~~~- 511 (724)
...+ +--++.|. +++..+.+..+++.+. ..++++.+ ..+ .++|..+ .+++||+..+.+.
T Consensus 155 ~v~~G~a~~~~~~~~riv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~ 232 (425)
T PRK15182 155 RINPGDKKHRLTNIKKITSGS--TAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRL 232 (425)
T ss_pred cCCCCcccccccCCCeEEECC--CHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2211 11245553 5788899999999986 34555544 112 2333332 5788999988877
Q ss_pred CCCHHHHHHHH
Q 004892 512 GVDVFRIDSAI 522 (724)
Q Consensus 512 Gv~~~~ID~a~ 522 (724)
|+++.++-+++
T Consensus 233 GiD~~~v~~a~ 243 (425)
T PRK15182 233 NIDTEAVLRAA 243 (425)
T ss_pred CcCHHHHHHHh
Confidence 99999988877
No 185
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.19 E-value=7.3e-10 Score=114.15 Aligned_cols=188 Identities=13% Similarity=0.127 Sum_probs=129.2
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCC---c-EEEEeCC-HHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc
Q 004892 308 VRKVAVIGGGLMGSGIATAHILNNI---Y-VVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~G~---~-V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (724)
..||+|||+|.||.+++..++++|+ + +++++++ ++.++...+. .+ +..+++.
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------~~-------------~~~~~~~ 60 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQAR----------YN-------------VSTTTDW 60 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHH----------cC-------------cEEeCCh
Confidence 3589999999999999999998873 3 7778874 5655443211 01 2223344
Q ss_pred -cCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEe-c
Q 004892 383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-R 460 (724)
Q Consensus 383 -~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii-~ 460 (724)
+.++++|+||.|+| .+..+++++++.++++ +.+|+|.+.+++++.+...+....+++..||..|...+..+..+ .
T Consensus 61 ~~~~~~~DiViiavp--~~~~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~ 137 (245)
T PRK07634 61 KQHVTSVDTIVLAMP--PSAHEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTM 137 (245)
T ss_pred HHHHhcCCEEEEecC--HHHHHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEee
Confidence 45789999999999 6677888898887766 56888999999999998888655578888997776555554433 4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhh-------hhhhHHHHHHHH-HHHcCCCHHHHHHHH
Q 004892 461 TERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVN-------RAFFPYSQSARL-LVSLGVDVFRIDSAI 522 (724)
Q Consensus 461 ~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG~i~n-------Rl~~~~~~Ea~~-l~~~Gv~~~~ID~a~ 522 (724)
....+++..+.++.++..+|..+.+ .+.--.... -+++.++..... .++.|+++++-.+++
T Consensus 138 ~~~~~~~~~~~v~~lf~~~G~~~~~-~e~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~ 206 (245)
T PRK07634 138 GQSVNETHKETLQLILKGIGTSQLC-TEEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLV 206 (245)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEE-CHHHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 5567899999999999999999864 321111111 111222222222 345588887766665
No 186
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.18 E-value=4.3e-10 Score=118.86 Aligned_cols=202 Identities=11% Similarity=0.045 Sum_probs=136.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCC-HHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (724)
+||+|||+|.||.++|..|...|++|+++++. ++..+.+. +.| +...+..+.+++
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~-----------~~G-------------v~~~s~~ea~~~ 59 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKAT-----------EDG-------------FKVGTVEEAIPQ 59 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHH-----------HCC-------------CEECCHHHHHhc
Confidence 67999999999999999999999998876554 33333321 112 122232356789
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCC-------CCeeeEe-
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHV-------MPLLEIV- 459 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~-------~~lveii- 459 (724)
||+|+.++|... ....+.+++.+.++++. ++|...++++..+....+...+++-+.|..|.+. +..+..+
T Consensus 60 ADiVvLaVpp~~-~~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~ 137 (314)
T TIGR00465 60 ADLIMNLLPDEV-QHEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLI 137 (314)
T ss_pred CCEEEEeCCcHh-HHHHHHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEE
Confidence 999999999432 35566677888888886 5678889999888777765567999999999974 6665433
Q ss_pred -cCCCCCHHHHHHHHHHHHHcCCe-------eE--EEc-CCCch--hhhhhhhHHHH---HHHHHHHcCCCHHHHHHHH-
Q 004892 460 -RTERTSAQVILDLMTVGKIIKKV-------PV--VVG-NCTGF--AVNRAFFPYSQ---SARLLVSLGVDVFRIDSAI- 522 (724)
Q Consensus 460 -~~~~t~~e~~~~~~~l~~~lGk~-------~v--~v~-d~pG~--i~nRl~~~~~~---Ea~~l~~~Gv~~~~ID~a~- 522 (724)
.+...+.+..+.+..++..+|.. .. .+. +.=+- ++.=..-+|+. |++ ++.|++++.-....
T Consensus 138 a~~~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~eal--v~~G~~~e~A~~~~~ 215 (314)
T TIGR00465 138 AVEQDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTL--VEAGYQPELAYFETV 215 (314)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHH--HHcCCCHHHHHHHHH
Confidence 56667889999999999999988 21 111 10010 00101112222 555 78899998766665
Q ss_pred HhcCCCccHHHHHHhhchH
Q 004892 523 RSFGLPIGPFQLLDLAGYG 541 (724)
Q Consensus 523 ~~~g~~~Gp~~~~D~~Gld 541 (724)
..+ .|-..++-..|+.
T Consensus 216 ~~~---~g~~~l~~e~g~~ 231 (314)
T TIGR00465 216 HEL---KLIVDLIYEGGIT 231 (314)
T ss_pred HHH---HHHHHHHHHhcHH
Confidence 322 4666777666763
No 187
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.16 E-value=5.1e-10 Score=133.50 Aligned_cols=157 Identities=17% Similarity=0.178 Sum_probs=117.4
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-c
Q 004892 307 GVRKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (724)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (724)
.++||+|||+|.||.+++..+.+.| ++|++||++++.++.+. +.|... ...++. +
T Consensus 2 ~~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~ 59 (735)
T PRK14806 2 LFGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAV-----------SLGVID-----------RGEEDLAE 59 (735)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHH-----------HCCCCC-----------cccCCHHH
Confidence 3589999999999999999999999 48999999998766532 122110 112233 4
Q ss_pred CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCC--CHHHHhcccC-CCCCEEEEecCCCCC---------
Q 004892 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS-SQDRIIGAHFFSPAH--------- 451 (724)
Q Consensus 384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~~~~~~~-~~~r~ig~h~~~p~~--------- 451 (724)
.+++||+||+|+| .+...++++++.++++++++|++.+|.. .+..+...+. ...||++.||...+.
T Consensus 60 ~~~~aDvVilavp--~~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~ 137 (735)
T PRK14806 60 AVSGADVIVLAVP--VLAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANA 137 (735)
T ss_pred HhcCCCEEEECCC--HHHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhh
Confidence 5789999999999 6778899999999888888776544432 2455555543 356899999975332
Q ss_pred ---CCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004892 452 ---VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (724)
Q Consensus 452 ---~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 487 (724)
....+.+++...++++..+.+.++++.+|..++++.
T Consensus 138 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~ 176 (735)
T PRK14806 138 DLFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHMD 176 (735)
T ss_pred HHhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 234456788888899999999999999999998884
No 188
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.14 E-value=7.6e-10 Score=111.84 Aligned_cols=162 Identities=16% Similarity=0.114 Sum_probs=107.9
Q ss_pred eEEEEc-CCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004892 310 KVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (724)
Q Consensus 310 kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (724)
||+||| +|.||+++|..|+++|++|++++|++++++......... ....|. . ..+..+++.++++++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~---~~~~g~-~--------~~~~~~~~~ea~~~a 69 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEE---LGHGGS-D--------IKVTGADNAEAAKRA 69 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhh---ccccCC-C--------ceEEEeChHHHHhcC
Confidence 799997 899999999999999999999999998876644322110 001110 0 012223334678899
Q ss_pred CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH-----------------HHHhcccCCCCCEEEEecCCCCC
Q 004892 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-----------------NIVGEKTSSQDRIIGAHFFSPAH 451 (724)
Q Consensus 389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-----------------~~~~~~~~~~~r~ig~h~~~p~~ 451 (724)
|+||.|+| .+...++++++.+.++. ++|++.+.++.. ..++..++...+++....+.+..
T Consensus 70 DvVilavp--~~~~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a~ 146 (219)
T TIGR01915 70 DVVILAVP--WDHVLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSAV 146 (219)
T ss_pred CEEEEECC--HHHHHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCHH
Confidence 99999999 77777888888776654 777777666654 23444443325666654322221
Q ss_pred -------CCCeeeEecCCCCCHHHHHHHHHHHHHc-CCeeEEEcC
Q 004892 452 -------VMPLLEIVRTERTSAQVILDLMTVGKII-KKVPVVVGN 488 (724)
Q Consensus 452 -------~~~lveii~~~~t~~e~~~~~~~l~~~l-Gk~~v~v~d 488 (724)
..+....+.|+ ++++.+.+..+.+.+ |..|+.++.
T Consensus 147 ~~~~~~~~~~~~~~v~Gd--d~~ak~~v~~L~~~~~G~~~vd~G~ 189 (219)
T TIGR01915 147 LLQDVDDEVDCDVLVCGD--DEEAKEVVAELAGRIDGLRALDAGP 189 (219)
T ss_pred HhcCCCCCCCCCEEEECC--CHHHHHHHHHHHHhcCCCCcccCCc
Confidence 11122234454 677899999999999 999988764
No 189
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.12 E-value=1.3e-09 Score=113.14 Aligned_cols=144 Identities=16% Similarity=0.150 Sum_probs=111.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC----cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc
Q 004892 310 KVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (724)
Q Consensus 310 kI~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 385 (724)
||+|||+|+||++|+..|.++|. ++++++++++.. + .....++.+.+
T Consensus 5 kI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-----------------~------------~~~~~~~~~~~ 55 (260)
T PTZ00431 5 RVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-----------------P------------FVYLQSNEELA 55 (260)
T ss_pred EEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-----------------C------------eEEeCChHHHH
Confidence 79999999999999999999873 499999887531 0 01111222456
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeE-ecCCCC
Q 004892 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEI-VRTERT 464 (724)
Q Consensus 386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lvei-i~~~~t 464 (724)
.+||+||.|++ ++...+++.++.++++++ +|+|..+++..+.+...+....+++.+.|..|......+.+ .+...+
T Consensus 56 ~~~D~Vilavk--p~~~~~vl~~i~~~l~~~-~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~~~ 132 (260)
T PTZ00431 56 KTCDIIVLAVK--PDLAGKVLLEIKPYLGSK-LLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANNNV 132 (260)
T ss_pred HhCCEEEEEeC--HHHHHHHHHHHHhhccCC-EEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCCCC
Confidence 78999999998 888999999998887764 56788899999888887765545677777777766655544 456677
Q ss_pred CHHHHHHHHHHHHHcCCeeEE
Q 004892 465 SAQVILDLMTVGKIIKKVPVV 485 (724)
Q Consensus 465 ~~e~~~~~~~l~~~lGk~~v~ 485 (724)
+++..+.+..+++.+|....+
T Consensus 133 ~~~~~~~v~~l~~~~G~~~~v 153 (260)
T PTZ00431 133 DSTDKKKVIDIFSACGIIQEI 153 (260)
T ss_pred CHHHHHHHHHHHHhCCcEEEE
Confidence 899999999999999988765
No 190
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.10 E-value=6e-11 Score=113.30 Aligned_cols=105 Identities=23% Similarity=0.228 Sum_probs=79.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCCC
Q 004892 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV 388 (724)
Q Consensus 310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~a 388 (724)
||+|||+|.||.++|..|+++|++|++|.++++.++...+...+ ...+.. ......+..++|+ ++++++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n-------~~~~~~---~~l~~~i~~t~dl~~a~~~a 70 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQN-------PKYLPG---IKLPENIKATTDLEEALEDA 70 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSE-------TTTSTT---SBEETTEEEESSHHHHHTT-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCC-------CCCCCC---cccCcccccccCHHHHhCcc
Confidence 79999999999999999999999999999999887765432110 000110 1122457778888 678999
Q ss_pred CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCC
Q 004892 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 426 (724)
Q Consensus 389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~ 426 (724)
|+||.+|| ....+++++++.++++++++|++.+.++
T Consensus 71 d~IiiavP--s~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 71 DIIIIAVP--SQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp SEEEE-S---GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cEEEeccc--HHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 99999999 8888999999999999999999888776
No 191
>PLN02712 arogenate dehydrogenase
Probab=99.09 E-value=1.1e-09 Score=127.07 Aligned_cols=154 Identities=11% Similarity=0.053 Sum_probs=108.7
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC-c
Q 004892 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-F 385 (724)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 385 (724)
+.+||+|||+|.||.++|..|.+.|++|++||++.+. +.+. +.| +...++.+. +
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~-----------~~G-------------v~~~~~~~el~ 422 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQ-----------KLG-------------VSYFSDADDLC 422 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHH-----------HcC-------------CeEeCCHHHHH
Confidence 3468999999999999999999999999999998642 2211 112 112334432 4
Q ss_pred C-CCCEEEEcccCChHHHHHHHHHHHh-hCCCCcEEEecCCC--CCHHHHhcccCCCCCEEEEecCCCCCCCC-----ee
Q 004892 386 K-DVDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAHVMP-----LL 456 (724)
Q Consensus 386 ~-~aDlVIeav~e~~~~k~~v~~~l~~-~~~~~~ii~s~ts~--~~~~~~~~~~~~~~r~ig~h~~~p~~~~~-----lv 456 (724)
. +||+||.|+| ......++.++.. .++++++|++.+|+ .++..+....+...+|++.||..++.... ..
T Consensus 423 ~~~aDvVILavP--~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~ 500 (667)
T PLN02712 423 EEHPEVILLCTS--ILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLA 500 (667)
T ss_pred hcCCCEEEECCC--hHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhh
Confidence 3 5899999999 6677788888765 57889999887776 44555555555545799999988776541 11
Q ss_pred -----eEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004892 457 -----EIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (724)
Q Consensus 457 -----eii~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 487 (724)
-++.++....+.++.+..++..+|.+++.+.
T Consensus 501 ~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms 536 (667)
T PLN02712 501 FVFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMS 536 (667)
T ss_pred hhccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeC
Confidence 1123334455667778899999999998873
No 192
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.09 E-value=6.4e-10 Score=119.68 Aligned_cols=165 Identities=15% Similarity=0.106 Sum_probs=97.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (724)
+||+|||+|.||.+||..|+++|++|++|+|+++..+.......+. .... |. ....++..+++. +.+++
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~--~~~~-g~-------~~~~~~~~~~~~~e~~~~ 74 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENR--EYLP-GV-------ALPAELYPTADPEEALAG 74 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCccc--ccCC-CC-------cCCCCeEEeCCHHHHHcC
Confidence 4899999999999999999999999999999998876654211110 0000 10 011124445555 55789
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCC-----HHHHhcccCC--CCCEE-EEecCCCCCC---CCee
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID-----LNIVGEKTSS--QDRII-GAHFFSPAHV---MPLL 456 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~-----~~~~~~~~~~--~~r~i-g~h~~~p~~~---~~lv 456 (724)
||+||+|+|.. ..++++ +.+++++++++.++++. ...++..+.. ..++. ..-|..+... .+..
T Consensus 75 aD~Vi~~v~~~--~~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~ 148 (328)
T PRK14618 75 ADFAVVAVPSK--ALRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAA 148 (328)
T ss_pred CCEEEEECchH--HHHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeE
Confidence 99999999955 234444 44567777776666543 2233333321 11211 1111111111 0122
Q ss_pred eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc
Q 004892 457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 491 (724)
Q Consensus 457 eii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG 491 (724)
.++.+ .+++.++.+++++...|..+.+..|.-|
T Consensus 149 ~~~~~--~~~~~~~~v~~ll~~~~~~v~~~~di~g 181 (328)
T PRK14618 149 TVVAS--PEPGLARRVQAAFSGPSFRVYTSRDRVG 181 (328)
T ss_pred EEEEe--CCHHHHHHHHHHhCCCcEEEEecCCccc
Confidence 23333 3788999999999999988775444333
No 193
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.08 E-value=6.7e-10 Score=112.28 Aligned_cols=146 Identities=21% Similarity=0.222 Sum_probs=107.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEEC
Q 004892 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE 106 (724)
Q Consensus 27 al~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~ 106 (724)
.-+...+.+|.+.|+.+..|++|++|||+..+..| ++.+++++. +.+ +.+...+|||||.++
T Consensus 25 ~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el~----------------~~i-~~~~~~~kpVia~~~ 86 (222)
T cd07018 25 ESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEELR----------------QAL-ERFRASGKPVIAYAD 86 (222)
T ss_pred CcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHHH----------------HHH-HHHHHhCCeEEEEeC
Confidence 34567899999999999999999999999888777 777776652 333 446668999999999
Q ss_pred ccccchhHHHHhhcCEEEEeCCceeeCcccc------------cCccCC---------cchhhh-----------h----
Q 004892 107 GLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPG---------FGGTQR-----------L---- 150 (724)
Q Consensus 107 G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~G~~P~---------~g~~~~-----------l---- 150 (724)
| |.++|+.|+++||.+++.+.+.|+..-+. +|+-+. .+..+. +
T Consensus 87 ~-~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l 165 (222)
T cd07018 87 G-YSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALL 165 (222)
T ss_pred C-CCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHH
Confidence 8 88999999999999999999999885432 232221 111110 0
Q ss_pred -------------cccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHH
Q 004892 151 -------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKV 192 (724)
Q Consensus 151 -------------~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~ 192 (724)
.|.+...... -+..|..+++++|++.||||++...+++.+.
T Consensus 166 ~~~~~~f~~~Va~~R~~~~~~~~-~~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~ 219 (222)
T cd07018 166 DSLWDQYLADVAASRGLSPDALE-ALIDLGGDSAEEALEAGLVDGLAYRDELEAR 219 (222)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHH-HHHHcCCcHHHHHHHCCCCCcCCcHHHHHHH
Confidence 1111222222 2345999999999999999999987777654
No 194
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.06 E-value=2.4e-09 Score=114.10 Aligned_cols=140 Identities=16% Similarity=0.203 Sum_probs=93.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (724)
+||+|||+|.||.++|..|+.+||+|++|+|++.. ++ +.+++
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~~-------------------------------------~~~~~~~~ 47 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSGL-------------------------------------SLAAVLAD 47 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCCC-------------------------------------CHHHHHhc
Confidence 47999999999999999999999999999998631 11 34678
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhh-CCCCcEEEecCCCCCHHH------HhcccCCCCCEEEEecCCCCC------CCC
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTIDLNI------VGEKTSSQDRIIGAHFFSPAH------VMP 454 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~-~~~~~ii~s~ts~~~~~~------~~~~~~~~~r~ig~h~~~p~~------~~~ 454 (724)
+|+||.|+|. ...+.++.++.++ +++++++++.++++.+.. +....-...+++.+ ..|.. ..+
T Consensus 48 advvi~~vp~--~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i--~gp~~a~ei~~~~~ 123 (308)
T PRK14619 48 ADVIVSAVSM--KGVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVL--SGPNLSKEIQQGLP 123 (308)
T ss_pred CCEEEEECCh--HHHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEE--ECCCcHHHHhcCCC
Confidence 9999999994 5677888888764 678888887766444331 11111011122211 11211 001
Q ss_pred eeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc
Q 004892 455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 491 (724)
Q Consensus 455 lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG 491 (724)
..-++.+. +.+..+.+++++...|..++..+|.-|
T Consensus 124 ~~~~~ag~--~~~~~~~v~~ll~~~~~~~~~~~d~~G 158 (308)
T PRK14619 124 AATVVASR--DLAAAETVQQIFSSERFRVYTNSDPLG 158 (308)
T ss_pred eEEEEEeC--CHHHHHHHHHHhCCCcEEEEecCCchh
Confidence 12222332 688999999999999988886666444
No 195
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.05 E-value=1.1e-10 Score=123.53 Aligned_cols=85 Identities=13% Similarity=0.171 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHH-HHHHHHHHHhhhCC---CC
Q 004892 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANY-VYTSLKKWSQLYGN---FF 694 (724)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~-~~~~~~~~~~~~~~---~~ 694 (724)
+++||.||++.+++|||++++++|++ |++|||.+++.|+|+|...-|||+++|++|+|. +.+.++.+.+.+.. .+
T Consensus 186 ~pGFi~NRl~~a~~~EA~~lv~eGva-s~edID~a~~~g~g~r~~~~Gpf~~~Dl~Gld~g~~~~~~~~g~~~~~~~~~~ 264 (321)
T PRK07066 186 VPGFIADRLLEALWREALHLVNEGVA-TTGEIDDAIRFGAGIRWSFMGTFLTYTLAGGDAGMRHFMQQFGPALELPWTKL 264 (321)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCccCcCHHHHhhhcChHHHHHHHHHHhhhhhhHHHHhc
Confidence 58999999999999999999999999 999999999999999854559999999999997 44444555444321 23
Q ss_pred CCCHHHHHHH
Q 004892 695 KPSRFLEERA 704 (724)
Q Consensus 695 ~p~~~l~~~~ 704 (724)
.+++++.+++
T Consensus 265 ~~p~~~~~~~ 274 (321)
T PRK07066 265 VAPELTDALI 274 (321)
T ss_pred CCCcccHHHH
Confidence 4444555554
No 196
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.05 E-value=1e-08 Score=114.31 Aligned_cols=203 Identities=15% Similarity=0.142 Sum_probs=127.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHH----HHHHHhhHhcCCCCHHHHHHhhcCcccccC
Q 004892 308 VRKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLD 381 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 381 (724)
++||+|||+|.+|..+|..|+++| ++|+++|+++++++...+.. +..++.++.. ..-.++.++++
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~---------~~~~~l~~t~~ 71 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQ---------CRGKNLFFSTD 71 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHH---------hhcCCEEEEcC
Confidence 358999999999999999999984 78999999999988764321 1111111110 01135888888
Q ss_pred c-cCcCCCCEEEEcccC-------------ChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH---HHhcccCC--C-CCE
Q 004892 382 Y-SEFKDVDMVIEAVIE-------------SVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSS--Q-DRI 441 (724)
Q Consensus 382 ~-~~~~~aDlVIeav~e-------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~--~-~r~ 441 (724)
+ +++++||++|.|||. |......+.++|.++++++++|+. .|+.++. .+...+.. + ..|
T Consensus 72 ~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~-~STvp~Gtt~~~~~~l~~~~~g~~f 150 (473)
T PLN02353 72 VEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVE-KSTVPVKTAEAIEKILTHNSKGINF 150 (473)
T ss_pred HHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEE-eCCCCCChHHHHHHHHHhhCCCCCe
Confidence 7 468999999999963 333677888899999999887763 3333332 22221111 0 111
Q ss_pred EEEecCCCCCCCCe---------eeE-ecCCC--CCHHHHHHHHHHHHHcCC-eeEEEcC-----CCchhhhhh---hhH
Q 004892 442 IGAHFFSPAHVMPL---------LEI-VRTER--TSAQVILDLMTVGKIIKK-VPVVVGN-----CTGFAVNRA---FFP 500 (724)
Q Consensus 442 ig~h~~~p~~~~~l---------vei-i~~~~--t~~e~~~~~~~l~~~lGk-~~v~v~d-----~pG~i~nRl---~~~ 500 (724)
--. ++|-.+.+. .-+ +.+.. +.+++.+.+..++..+-+ .++.+.+ ..-++.|-+ -.+
T Consensus 151 ~v~--~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Ia 228 (473)
T PLN02353 151 QIL--SNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRIS 228 (473)
T ss_pred EEE--ECCCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHH
Confidence 111 122211111 113 34432 126678999999998753 4444432 223444543 358
Q ss_pred HHHHHHHHHHc-CCCHHHHHHHH
Q 004892 501 YSQSARLLVSL-GVDVFRIDSAI 522 (724)
Q Consensus 501 ~~~Ea~~l~~~-Gv~~~~ID~a~ 522 (724)
++||...+.+. |+++.+|-.++
T Consensus 229 f~NEla~lce~~giD~~eV~~~~ 251 (473)
T PLN02353 229 SVNAMSALCEATGADVSQVSHAV 251 (473)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHh
Confidence 89998877766 99999988888
No 197
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=99.04 E-value=3.6e-10 Score=120.21 Aligned_cols=126 Identities=20% Similarity=0.315 Sum_probs=94.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004892 308 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 386 (724)
.+||+|||+|.||.++|..++..|+ +|+++|++++.+..-. ++..... .......++..++++++++
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~------ld~~~~~------~~~~~~~~I~~~~d~~~l~ 73 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKA------LDISHSN------VIAGSNSKVIGTNNYEDIA 73 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHH------HHHHhhh------hccCCCeEEEECCCHHHhC
Confidence 3699999999999999999999996 9999999998753211 1111110 0011123567678889999
Q ss_pred CCCEEEEcc-------------------cCChHHHHHHHHHHHhhCCCC-cEEEecCCCCCHHHHhcccCCC-CCEEEEe
Q 004892 387 DVDMVIEAV-------------------IESVPLKQKIFSELEKACPPH-CILATNTSTIDLNIVGEKTSSQ-DRIIGAH 445 (724)
Q Consensus 387 ~aDlVIeav-------------------~e~~~~k~~v~~~l~~~~~~~-~ii~s~ts~~~~~~~~~~~~~~-~r~ig~h 445 (724)
+||+||+++ .++..+++++.+++.+++++. .|++||++.+....+......| .|++|++
T Consensus 74 ~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 74 GSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 999999955 567888999999999999774 4556888888777777766654 7888875
No 198
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.04 E-value=4.4e-09 Score=102.12 Aligned_cols=154 Identities=18% Similarity=0.146 Sum_probs=105.9
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004892 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 386 (724)
|++++|+|+|.||+++|..|+++||+|++-.++.+ +.+.+.+.+ ...++..+..++++
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l---------------------~~~i~~~~~~dA~~ 59 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAAL---------------------GPLITGGSNEDAAA 59 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhh---------------------ccccccCChHHHHh
Confidence 57899999999999999999999999999966554 444332211 12355566668889
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCC----------------CHHH-HhcccCCCCCEEE-Eec--
Q 004892 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI----------------DLNI-VGEKTSSQDRIIG-AHF-- 446 (724)
Q Consensus 387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~----------------~~~~-~~~~~~~~~r~ig-~h~-- 446 (724)
.||+||.+|| ......+.+++...+. +.|+++.|..+ +.++ +++.++.. +++. .|-
T Consensus 60 ~aDVVvLAVP--~~a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkAFn~i~ 135 (211)
T COG2085 60 LADVVVLAVP--FEAIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKAFNTIP 135 (211)
T ss_pred cCCEEEEecc--HHHHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhhhcccC
Confidence 9999999999 8888899999988776 67777655432 1122 22223322 3322 121
Q ss_pred ----CCCCCC-CCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004892 447 ----FSPAHV-MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (724)
Q Consensus 447 ----~~p~~~-~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d 488 (724)
-+-+.. .+..-.++|. |.++.+.+.++.+.+|..|+-++.
T Consensus 136 a~~l~~~~~~~~~~~v~vagD--D~~Ak~~v~~L~~~iG~~~ld~G~ 180 (211)
T COG2085 136 AAVLADLAKPGGRRDVLVAGD--DAEAKAVVAELAEDIGFRPLDAGP 180 (211)
T ss_pred HHHhccCCCcCCceeEEEecC--cHHHHHHHHHHHHhcCcceeeccc
Confidence 111111 3444455554 889999999999999999998865
No 199
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.01 E-value=4.1e-09 Score=109.17 Aligned_cols=140 Identities=17% Similarity=0.140 Sum_probs=101.8
Q ss_pred HHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCCEEEEcccCChH
Q 004892 323 IATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVP 400 (724)
Q Consensus 323 iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~~~ 400 (724)
||..|.++| ++|+.||++++.++.+. +.|.++ ...++.+.+++||+||.|+| +.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~~~~DlvvlavP--~~ 56 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAAL-----------ELGIID-----------EASTDIEAVEDADLVVLAVP--VS 56 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHH-----------HTTSSS-----------EEESHHHHGGCCSEEEE-S---HH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHH-----------HCCCee-----------eccCCHhHhcCCCEEEEcCC--HH
Confidence 688899999 68999999999877753 233322 01122467899999999999 89
Q ss_pred HHHHHHHHHHhhCCCCcEEEecCCCC--CHHHHhcccCCCCCEEEEecCCCC------------CCCCeeeEecCCCCCH
Q 004892 401 LKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPA------------HVMPLLEIVRTERTSA 466 (724)
Q Consensus 401 ~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~~~~~~~~~~r~ig~h~~~p~------------~~~~lveii~~~~t~~ 466 (724)
...++++++.++++++++|++.+|.. ++..+........+|+|.||...+ ..+..+.+++++.+++
T Consensus 57 ~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~ 136 (258)
T PF02153_consen 57 AIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDP 136 (258)
T ss_dssp HHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-H
T ss_pred HHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChH
Confidence 99999999999999999998766653 334555555556789999997665 2456678889999999
Q ss_pred HHHHHHHHHHHHcCCeeEEE
Q 004892 467 QVILDLMTVGKIIKKVPVVV 486 (724)
Q Consensus 467 e~~~~~~~l~~~lGk~~v~v 486 (724)
+.++.+..+++.+|..++.+
T Consensus 137 ~~~~~~~~l~~~~Ga~~~~~ 156 (258)
T PF02153_consen 137 EALELVEELWEALGARVVEM 156 (258)
T ss_dssp HHHHHHHHHHHHCT-EEEE-
T ss_pred HHHHHHHHHHHHCCCEEEEc
Confidence 99999999999999998887
No 200
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.01 E-value=2.1e-09 Score=104.06 Aligned_cols=145 Identities=23% Similarity=0.319 Sum_probs=101.0
Q ss_pred EEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004892 16 AIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (724)
Q Consensus 16 ~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (724)
.+|.++. .+++...+.+.++|+++++++ ++.|||.=. |.|+++.. ...++ +.|.
T Consensus 2 ~vi~i~g----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~in----spGG~v~~----------------~~~I~-~~l~ 55 (178)
T cd07021 2 YVIPIEG----EIDPGLAAFVERALKEAKEEG-ADAVVLDID----TPGGRVDS----------------ALEIV-DLIL 55 (178)
T ss_pred EEEEEee----EECHHHHHHHHHHHHHHHhCC-CCeEEEEEE----CcCCCHHH----------------HHHHH-HHHH
Confidence 4555544 377788889999999998876 677777311 12233221 22445 6688
Q ss_pred cCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchh--------hh------hcccc--cHHHH
Q 004892 96 DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGT--------QR------LPRLV--GLSKA 159 (724)
Q Consensus 96 ~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~--------~~------l~r~~--G~~~a 159 (724)
.+++|||+.|+|.|.++|+.++++||++++++++.|+.+++- +..|+. .. +.+.- ....+
T Consensus 56 ~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v----~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~~~a 131 (178)
T cd07021 56 NSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPI----PGDGNGAADEKVQSYWRAKMRAAAEKKGRDPDIA 131 (178)
T ss_pred hCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeE----cCCCccchhHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 899999999999999999999999999999999999988553 322221 11 11111 23455
Q ss_pred HHHHHcC-------------CCCCHHHHHHCCCcceecC-cchHH
Q 004892 160 IEMMLLS-------------KSITSEEGWKLGLIDAVVT-SEELL 190 (724)
Q Consensus 160 ~~l~ltg-------------~~i~a~eA~~~Glv~~vv~-~~~l~ 190 (724)
..|+-.. -.++++||++.|++|.+.+ .++|.
T Consensus 132 ~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~~~~ll 176 (178)
T cd07021 132 EAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDELL 176 (178)
T ss_pred HHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECCHHHHh
Confidence 5565544 3799999999999999985 34443
No 201
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=98.98 E-value=6.7e-10 Score=117.81 Aligned_cols=122 Identities=18% Similarity=0.291 Sum_probs=88.9
Q ss_pred EEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCC
Q 004892 311 VAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (724)
Q Consensus 311 I~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 389 (724)
|+|||+|.||.++|..++..|+ +|+++|++++.++...-.+... . .......++..+++++++++||
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~----~--------~~~~~~~~I~~t~d~~~l~dAD 68 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQA----A--------PILGSDTKVTGTNDYEDIAGSD 68 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHh----h--------hhcCCCeEEEEcCCHHHhCCCC
Confidence 6899999999999999999887 9999999987543211111110 0 0111123566667788899999
Q ss_pred EEEEcc--------------cCChHHHHHHHHHHHhhCCCCcE-EEecCCCCCHHHHhcccCC-CCCEEEE
Q 004892 390 MVIEAV--------------IESVPLKQKIFSELEKACPPHCI-LATNTSTIDLNIVGEKTSS-QDRIIGA 444 (724)
Q Consensus 390 lVIeav--------------~e~~~~k~~v~~~l~~~~~~~~i-i~s~ts~~~~~~~~~~~~~-~~r~ig~ 444 (724)
+||+++ +++..+++++++++.++++++.+ ++||.+.+....+...... |.|++|+
T Consensus 69 iVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGl 139 (300)
T cd01339 69 VVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGM 139 (300)
T ss_pred EEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEe
Confidence 999866 67889999999999999987774 4578777766666665553 4677775
No 202
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.97 E-value=4.8e-08 Score=100.61 Aligned_cols=147 Identities=18% Similarity=0.133 Sum_probs=96.2
Q ss_pred cHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccC-ccCcCCCCEEEEcccCC
Q 004892 320 GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD-YSEFKDVDMVIEAVIES 398 (724)
Q Consensus 320 G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~~aDlVIeav~e~ 398 (724)
|.+||.+|+++||+|++||+++++.+.... +.+.+.| ...+++ .+++++||+||.|+|++
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~------e~LaeaG-------------A~~AaS~aEAAa~ADVVIL~LPd~ 92 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLW------KKVEDAG-------------VKVVSDDKEAAKHGEIHVLFTPFG 92 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhh------HHHHHCC-------------CeecCCHHHHHhCCCEEEEecCCH
Confidence 889999999999999999999876542110 1112222 222333 37788999999999955
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCC----C---CCEEEEecCCCC-CCCCeeeEecCC------CC
Q 004892 399 VPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSS----Q---DRIIGAHFFSPA-HVMPLLEIVRTE------RT 464 (724)
Q Consensus 399 ~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~----~---~r~ig~h~~~p~-~~~~lveii~~~------~t 464 (724)
..+ ++++..+.+.++++++|+ ++||+++..+...+.. . -.+..+||-.-| ....-.-++.+. ..
T Consensus 93 aaV-~eVl~GLaa~L~~GaIVI-D~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A 170 (341)
T TIGR01724 93 KGT-FSIARTIIEHVPENAVIC-NTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGKEMA 170 (341)
T ss_pred HHH-HHHHHHHHhcCCCCCEEE-ECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCceeeeccccccccccC
Confidence 444 455677888899999875 5677776655443321 2 235556663211 111111233322 23
Q ss_pred CHHHHHHHHHHHHHcCCeeEEEc
Q 004892 465 SAQVILDLMTVGKIIKKVPVVVG 487 (724)
Q Consensus 465 ~~e~~~~~~~l~~~lGk~~v~v~ 487 (724)
++|.++++.++.+..|+.+.++.
T Consensus 171 ~ee~i~~~~el~~~~~~~~~~~p 193 (341)
T TIGR01724 171 TEEQISKCVELAKSTGKKAYVVP 193 (341)
T ss_pred CHHHHHHHHHHHHHhCCCeeecc
Confidence 89999999999999999998873
No 203
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.97 E-value=1.3e-09 Score=116.19 Aligned_cols=125 Identities=18% Similarity=0.286 Sum_probs=84.8
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004892 308 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 386 (724)
|+||+|||+|.||.++|..++..|+ +|+++|++++.++.....+.... . ......+++.++++++++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~---~---------~~~~~~~i~~~~d~~~~~ 69 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAA---P---------VEGFDTKITGTNDYEDIA 69 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhh---h---------hcCCCcEEEeCCCHHHHC
Confidence 5799999999999999999999876 99999999887543221111110 0 011123566667888899
Q ss_pred CCCEEEEcc--------------cCChHHHHHHHHHHHhhCCCCcEE-EecCCCCCHHHHhcccC-CCCCEEEE
Q 004892 387 DVDMVIEAV--------------IESVPLKQKIFSELEKACPPHCIL-ATNTSTIDLNIVGEKTS-SQDRIIGA 444 (724)
Q Consensus 387 ~aDlVIeav--------------~e~~~~k~~v~~~l~~~~~~~~ii-~s~ts~~~~~~~~~~~~-~~~r~ig~ 444 (724)
+||+||+++ .++.++++++++++.+.+++..+| +||.+......+..... .+.+++|+
T Consensus 70 ~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~ 143 (307)
T PRK06223 70 GSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGM 143 (307)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEe
Confidence 999999987 356688999999999998665333 45555444333333333 23566664
No 204
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.95 E-value=1.4e-09 Score=115.91 Aligned_cols=125 Identities=22% Similarity=0.304 Sum_probs=91.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (724)
.||+|||+|.||.++|..++..| .+|+++|++++.++...-++... . .......++..+++++++++
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~----~--------~~~~~~~~i~~~~d~~~l~~ 73 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHF----S--------TLVGSNINILGTNNYEDIKD 73 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhh----c--------cccCCCeEEEeCCCHHHhCC
Confidence 58999999999999999999999 69999999988754211111110 0 00011124555678889999
Q ss_pred CCEEEEcc--cCCh------------HHHHHHHHHHHhhCCCC-cEEEecCCCCCHHHHhcccCCC-CCEEEEe
Q 004892 388 VDMVIEAV--IESV------------PLKQKIFSELEKACPPH-CILATNTSTIDLNIVGEKTSSQ-DRIIGAH 445 (724)
Q Consensus 388 aDlVIeav--~e~~------------~~k~~v~~~l~~~~~~~-~ii~s~ts~~~~~~~~~~~~~~-~r~ig~h 445 (724)
||+||+++ |+++ .+++++.+++.+++++. .|++||++......+......| .|++|++
T Consensus 74 ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 74 SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 99999999 6666 88999999999998776 4556888877766666665554 7888875
No 205
>PLN02712 arogenate dehydrogenase
Probab=98.95 E-value=1.1e-08 Score=118.88 Aligned_cols=153 Identities=16% Similarity=0.120 Sum_probs=104.9
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC-c-
Q 004892 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-F- 385 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~- 385 (724)
.+||+|||+|.||.++|..|.+.|++|++||++... +.+. +.| +...++.++ +
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~-----------~~G-------------v~~~~d~~e~~~ 106 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAAR-----------SLG-------------VSFFLDPHDLCE 106 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHH-----------HcC-------------CEEeCCHHHHhh
Confidence 358999999999999999999999999999998543 2111 111 122334432 3
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHH-hhCCCCcEEEecCCCCC--HHHHhcccCCCCCEEEEecCCCCCCC-----Ceee
Q 004892 386 KDVDMVIEAVIESVPLKQKIFSELE-KACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAHVM-----PLLE 457 (724)
Q Consensus 386 ~~aDlVIeav~e~~~~k~~v~~~l~-~~~~~~~ii~s~ts~~~--~~~~~~~~~~~~r~ig~h~~~p~~~~-----~lve 457 (724)
.+||+||.|+| .....+++.++. +.++++++|++.+|... ...+...++....|++.||...+... ....
T Consensus 107 ~~aDvViLavP--~~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~ 184 (667)
T PLN02712 107 RHPDVILLCTS--IISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRF 184 (667)
T ss_pred cCCCEEEEcCC--HHHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcE
Confidence 56999999999 677788888875 56788998887665442 23344444444469999997666421 1112
Q ss_pred Eec-----CCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004892 458 IVR-----TERTSAQVILDLMTVGKIIKKVPVVVG 487 (724)
Q Consensus 458 ii~-----~~~t~~e~~~~~~~l~~~lGk~~v~v~ 487 (724)
+.. .+....+.++.+.++++.+|..++.+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms 219 (667)
T PLN02712 185 VYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMS 219 (667)
T ss_pred EEeeccCCCccccHHHHHHHHHHHHHcCCEEEEeC
Confidence 222 222344667888899999999999883
No 206
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.94 E-value=5.6e-09 Score=115.77 Aligned_cols=179 Identities=14% Similarity=0.089 Sum_probs=118.9
Q ss_pred CcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc----CcCCCCEEEEc
Q 004892 319 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS----EFKDVDMVIEA 394 (724)
Q Consensus 319 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~----~~~~aDlVIea 394 (724)
||..||.+|+++|++|++|||++++.+...+. .|. -..+....+++ .++.+|+||.+
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~----------~g~---------~~g~~~~~s~~e~v~~l~~~~~Ii~m 61 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAE----------EGK---------GKKIVPAYTLEEFVASLEKPRKILLM 61 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHh----------hCC---------CCCeEeeCCHHHHHhhCCCCCEEEEE
Confidence 89999999999999999999999998775321 010 01123344442 23358999999
Q ss_pred ccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHH--HhcccCCCCCEEEEecCCCCCCCCe------eeEecCCCCCH
Q 004892 395 VIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI--VGEKTSSQDRIIGAHFFSPAHVMPL------LEIVRTERTSA 466 (724)
Q Consensus 395 v~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~--~~~~~~~~~r~ig~h~~~p~~~~~l------veii~~~~t~~ 466 (724)
||.+..+ .+++..+.+.+.++.||+..+++.+.+. ....+.. .|+||+..|..+.. .-+++|. ++
T Consensus 62 v~~g~~v-~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~----~Gi~fvdapVSGG~~gA~~G~siM~GG--~~ 134 (459)
T PRK09287 62 VKAGAPV-DAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAE----KGIHFIGMGVSGGEEGALHGPSIMPGG--QK 134 (459)
T ss_pred CCCchHH-HHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh----cCCeEEecCCCCCHHHHhcCCEEEEeC--CH
Confidence 9977555 4566888899999998886554444332 2222321 15666544422211 1344443 69
Q ss_pred HHHHHHHHHHHHcCCee-------EEEcCC-Cch---hh-hhhhhHH---HHHHHHHHHc--CCCHHHHHHHHH
Q 004892 467 QVILDLMTVGKIIKKVP-------VVVGNC-TGF---AV-NRAFFPY---SQSARLLVSL--GVDVFRIDSAIR 523 (724)
Q Consensus 467 e~~~~~~~l~~~lGk~~-------v~v~d~-pG~---i~-nRl~~~~---~~Ea~~l~~~--Gv~~~~ID~a~~ 523 (724)
++++.++++++.++..+ .++++. .|. ++ |-+.+.. +.|++.+++. |++++++-.++.
T Consensus 135 ~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~ 208 (459)
T PRK09287 135 EAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFA 208 (459)
T ss_pred HHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99999999999999876 788763 222 23 4454433 4599999983 899999988874
No 207
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.91 E-value=3.7e-09 Score=103.41 Aligned_cols=113 Identities=20% Similarity=0.221 Sum_probs=73.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHh--hcCcccccCcc-Cc
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNA--LKMLKGVLDYS-EF 385 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~--~~~i~~~~~~~-~~ 385 (724)
+||+|||+|.+|..+|..|+++||+|+++|++++.++...+..- ...+.+ + .+-.... -+++.++++.+ ++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~----p~~E~~-l-~~ll~~~~~~~~l~~t~~~~~ai 74 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGEL----PIYEPG-L-DELLKENVSAGRLRATTDIEEAI 74 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSS----SS-CTT-H-HHHHHHHHHTTSEEEESEHHHHH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccc----cccccc-h-hhhhccccccccchhhhhhhhhh
Confidence 58999999999999999999999999999999998887543210 000000 0 0111111 25778888874 48
Q ss_pred CCCCEEEEcccC--------ChHHHHHHHHHHHhhCCCCcEEEecCCCCCH
Q 004892 386 KDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDL 428 (724)
Q Consensus 386 ~~aDlVIeav~e--------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~ 428 (724)
++||++|.|||. |.....++.+.|.+.++++.+|+. -|+.++
T Consensus 75 ~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~-~STvpp 124 (185)
T PF03721_consen 75 KDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVI-ESTVPP 124 (185)
T ss_dssp HH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEE-SSSSST
T ss_pred hccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEE-ccEEEE
Confidence 999999999974 455677888999999999888764 444444
No 208
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.88 E-value=3.2e-09 Score=92.40 Aligned_cols=91 Identities=21% Similarity=0.223 Sum_probs=69.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHCC---CcEEEE-eCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc
Q 004892 310 KVAVIGGGLMGSGIATAHILNN---IYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (724)
Q Consensus 310 kI~VIG~G~mG~~iA~~la~~G---~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 385 (724)
||+|||+|.||.+|+..|.++| ++|+++ +++++++++..++. + ..+...+..+.+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~----------~-----------~~~~~~~~~~~~ 59 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY----------G-----------VQATADDNEEAA 59 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC----------T-----------TEEESEEHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh----------c-----------cccccCChHHhh
Confidence 7999999999999999999999 899966 99999987754311 0 011111334678
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004892 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (724)
Q Consensus 386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (724)
+++|+||.||| ++...+++.++ ....++.+++|.+.
T Consensus 60 ~~advvilav~--p~~~~~v~~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 60 QEADVVILAVK--PQQLPEVLSEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp HHTSEEEE-S---GGGHHHHHHHH-HHHHTTSEEEEEST
T ss_pred ccCCEEEEEEC--HHHHHHHHHHH-hhccCCCEEEEeCC
Confidence 89999999999 88888999999 66677888887654
No 209
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.87 E-value=1.8e-08 Score=108.69 Aligned_cols=176 Identities=14% Similarity=0.078 Sum_probs=111.6
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004892 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (724)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (724)
.++||+|||+|.||+.+|..|+++| +|++|.++++..+...+...+ ......+. ....++..+++. +++
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~--~~~l~~~~-------~l~~~i~~t~d~~~a~ 75 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRN--SRYLGNDV-------VLSDTLRATTDFAEAA 75 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCC--cccCCCCc-------ccCCCeEEECCHHHHH
Confidence 4578999999999999999999999 799999999887765432100 00000010 011345566676 567
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH------H-HHhcccCCCCCEE-EEecCCCCC---CCC
Q 004892 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL------N-IVGEKTSSQDRII-GAHFFSPAH---VMP 454 (724)
Q Consensus 386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~------~-~~~~~~~~~~r~i-g~h~~~p~~---~~~ 454 (724)
+++|+||.||| ....+++++++.+++++++++++.+.++.. + .+.+.++. .++. -..|..+.. ..+
T Consensus 76 ~~aDlVilavp--s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~-~~~~~l~GP~~a~ev~~g~~ 152 (341)
T PRK12439 76 NCADVVVMGVP--SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPG-HPAGILAGPNIAREVAEGYA 152 (341)
T ss_pred hcCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCC-CCeEEEECCCHHHHHHcCCC
Confidence 89999999999 888999999999999998877776666664 2 33333322 2221 111211111 111
Q ss_pred eeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhh
Q 004892 455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRA 497 (724)
Q Consensus 455 lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl 497 (724)
...++.. .+++..+.+..++..-+..+....|..|...--.
T Consensus 153 t~~via~--~~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~a 193 (341)
T PRK12439 153 AAAVLAM--PDQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGA 193 (341)
T ss_pred eEEEEEe--CCHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHH
Confidence 1112222 2677778888888877777776677666544333
No 210
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.82 E-value=1.7e-08 Score=91.72 Aligned_cols=114 Identities=17% Similarity=0.158 Sum_probs=72.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEE-eCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (724)
.||+|||+|.+|..++..|.++||+|..+ .|+++..+++...+ ......+..+.+.+
T Consensus 11 l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~----------------------~~~~~~~~~~~~~~ 68 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFI----------------------GAGAILDLEEILRD 68 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC------------------------TT-----TTGGGCC
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccccccccc----------------------cccccccccccccc
Confidence 58999999999999999999999998775 78877666543211 11222223366789
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhh--CCCCcEEEecCCCCCHHHHhcccCCCCCEEEEec
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKA--CPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHF 446 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~--~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~ 446 (724)
+|+||.+||++ ...++.++|... ..++.+|+=.+...+.+-+......-.....+||
T Consensus 69 aDlv~iavpDd--aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 69 ADLVFIAVPDD--AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP 127 (127)
T ss_dssp -SEEEE-S-CC--HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred CCEEEEEechH--HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence 99999999965 667889999887 7788887644444555555554444555667775
No 211
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.79 E-value=1.3e-08 Score=109.71 Aligned_cols=107 Identities=21% Similarity=0.122 Sum_probs=79.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC-------CcEEEEeCCHHH-----HHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCc
Q 004892 309 RKVAVIGGGLMGSGIATAHILNN-------IYVVLKEVNSEY-----LLKGIKTIEANVRGLVTRGKLTQDKANNALKML 376 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G-------~~V~l~d~~~~~-----~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i 376 (724)
+||+|||+|.||+++|..++++| ++|.+|.++++. .+...+..++ .++...-. ...++
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N--~~ylp~~~--------Lp~ni 81 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHEN--VKYLPGIK--------LPDNI 81 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCC--cccCCCCc--------CCCce
Confidence 58999999999999999999998 899999999863 3332211111 01111111 23567
Q ss_pred ccccCc-cCcCCCCEEEEcccCChHHHHHHHHHHHh--hCCCCcEEEecCCCCC
Q 004892 377 KGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEK--ACPPHCILATNTSTID 427 (724)
Q Consensus 377 ~~~~~~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~--~~~~~~ii~s~ts~~~ 427 (724)
..++|+ +++++||+||.+|| ++..+++++++.+ .++++++++|.+.++.
T Consensus 82 ~~tsdl~eav~~aDiIvlAVP--sq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe 133 (365)
T PTZ00345 82 VAVSDLKEAVEDADLLIFVIP--HQFLESVLSQIKENNNLKKHARAISLTKGII 133 (365)
T ss_pred EEecCHHHHHhcCCEEEEEcC--hHHHHHHHHHhccccccCCCCEEEEEeCCcc
Confidence 778887 57899999999999 9999999999998 7777877877666554
No 212
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.79 E-value=1.4e-08 Score=108.52 Aligned_cols=108 Identities=20% Similarity=0.207 Sum_probs=79.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHCC--------CcEEEEeC-----CHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCc
Q 004892 310 KVAVIGGGLMGSGIATAHILNN--------IYVVLKEV-----NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML 376 (724)
Q Consensus 310 kI~VIG~G~mG~~iA~~la~~G--------~~V~l~d~-----~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i 376 (724)
||+|||+|.||+++|..++.+| ++|++|.+ +++..+...+..++ . ++.. + + ....++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n-~-~ylp-g-i------~Lp~~i 70 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHEN-V-KYLP-G-I------KLPANL 70 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCC-c-cccC-C-C------cCCCCe
Confidence 6999999999999999999999 99999999 44433332211100 0 0000 1 0 012457
Q ss_pred ccccCc-cCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH
Q 004892 377 KGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (724)
Q Consensus 377 ~~~~~~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~ 429 (724)
.+++|+ +++++||+||.+|| .+..+++++++.++++++.++++.+.++...
T Consensus 71 ~at~dl~eal~~ADiIIlAVP--s~~i~~vl~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 71 VAVPDLVEAAKGADILVFVIP--HQFLEGICKQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred EEECCHHHHHhcCCEEEEECC--hHHHHHHHHHHHhhcCCCCEEEEEeCCcccC
Confidence 778887 56799999999999 8999999999999999888888877766543
No 213
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.76 E-value=1.7e-07 Score=91.38 Aligned_cols=184 Identities=14% Similarity=0.126 Sum_probs=124.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc----cC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SE 384 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~ 384 (724)
++|+.||+|.||..++..+.+.||+|+.||+|+++.+.+.. .| ++..+++ +.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~-----------~g-------------a~~a~sl~el~~~ 56 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKD-----------EG-------------ATGAASLDELVAK 56 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHh-----------cC-------------CccccCHHHHHHh
Confidence 37999999999999999999999999999999999887542 22 1111121 34
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCe-------ee
Q 004892 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPL-------LE 457 (724)
Q Consensus 385 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~l-------ve 457 (724)
+...-.|-.+||- -++..+++.++.+.+.++-+|+....+.--+.+...-...+ .|+||++--..+-. .-
T Consensus 57 L~~pr~vWlMvPa-g~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~--kgi~flD~GTSGG~~G~~~G~~l 133 (300)
T COG1023 57 LSAPRIVWLMVPA-GDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAE--KGIHFLDVGTSGGVWGAERGYCL 133 (300)
T ss_pred cCCCcEEEEEccC-CCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHh--cCCeEEeccCCCCchhhhcCceE
Confidence 5566788899982 23778999999999999999987554433332222111112 27888754322211 11
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCC---eeEEEcC-CCchhh----hhhhhHH---HHHHHHHHHcC---CCHHHHHHHH
Q 004892 458 IVRTERTSAQVILDLMTVGKIIKK---VPVVVGN-CTGFAV----NRAFFPY---SQSARLLVSLG---VDVFRIDSAI 522 (724)
Q Consensus 458 ii~~~~t~~e~~~~~~~l~~~lGk---~~v~v~d-~pG~i~----nRl~~~~---~~Ea~~l~~~G---v~~~~ID~a~ 522 (724)
.|.| ++++++.+.++++.+.. -..++++ ..|..+ |-+=+.+ +.|.+.++++. ++.++|.+++
T Consensus 134 MiGG---~~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW 209 (300)
T COG1023 134 MIGG---DEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVW 209 (300)
T ss_pred EecC---cHHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 3334 79999999999998765 3345653 445433 5553433 35889999885 3788888887
No 214
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.70 E-value=9.7e-08 Score=102.69 Aligned_cols=105 Identities=16% Similarity=0.127 Sum_probs=74.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc-Cc-CC
Q 004892 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EF-KD 387 (724)
Q Consensus 310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~-~~ 387 (724)
||+|||+|.||+.+|..|+++|++|++|+|+++.++...+...+ . .+.. +. .....+..+++.+ .+ .+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~-~-~~~~-~~-------~~~~~i~~~~~~~~~~~~~ 71 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKN-L-KYLP-TC-------HLPDNISVKSAIDEVLSDN 71 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCC-c-ccCC-CC-------cCCCCeEEeCCHHHHHhCC
Confidence 79999999999999999999999999999999877654331000 0 0000 00 0112344555653 44 58
Q ss_pred CCEEEEcccCChHHHHHHHHHHHh-hCCCCcEEEecCCCC
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTSTI 426 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~-~~~~~~ii~s~ts~~ 426 (724)
+|+||.+|| .....++++++.+ ++++++.+++.++++
T Consensus 72 ~Dliiiavk--s~~~~~~l~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 72 ATCIILAVP--TQQLRTICQQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred CCEEEEEeC--HHHHHHHHHHHHHhcCCCCCEEEEEEcCe
Confidence 999999998 7888899999988 888887666666655
No 215
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.69 E-value=7.3e-07 Score=94.95 Aligned_cols=167 Identities=13% Similarity=0.069 Sum_probs=97.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc-CcCCC
Q 004892 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EFKDV 388 (724)
Q Consensus 310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~a 388 (724)
||+|||+|.||..+|..|+++|++|+++++ ++.++...+. .+ .+....- + ..-.....++.+ ..+++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~---g~--~~~~~~~-----~-~~~~~~~~~~~~~~~~~~ 69 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRER---GL--VIRSDHG-----D-AVVPGPVITDPEELTGPF 69 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhC---Ce--EEEeCCC-----e-EEecceeecCHHHccCCC
Confidence 799999999999999999999999999999 7666553210 00 0000000 0 000111233443 34899
Q ss_pred CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH-HHHhcccCCCCCEE-EEecCCCCCCCC-eee------Ee
Q 004892 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRII-GAHFFSPAHVMP-LLE------IV 459 (724)
Q Consensus 389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~~~~~~~~~~~r~i-g~h~~~p~~~~~-lve------ii 459 (724)
|+||.|++ .....++++++.+.+.++++|++...++.. ..+...++. .+++ +..++......+ .+. ++
T Consensus 70 d~vilavk--~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~-~~v~~g~~~~~~~~~~~g~v~~~~~~~~~ 146 (305)
T PRK12921 70 DLVILAVK--AYQLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGR-ERVLGGVVFISAQLNGDGVVVQRADHRLT 146 (305)
T ss_pred CEEEEEec--ccCHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCc-ccEEEEEEEEEEEECCCeEEEEcCCCcEE
Confidence 99999998 444567888898888888888766666653 344444432 2333 233221111111 011 11
Q ss_pred cC--CCCCHHHHHHHHHHHHHcCCeeEEEcCCCc
Q 004892 460 RT--ERTSAQVILDLMTVGKIIKKVPVVVGNCTG 491 (724)
Q Consensus 460 ~~--~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG 491 (724)
-| +....+..+.+..++...|..+.+..|...
T Consensus 147 iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~ 180 (305)
T PRK12921 147 FGEIPGQRSERTRAVRDALAGARLEVVLSENIRQ 180 (305)
T ss_pred EcCCCCCcCHHHHHHHHHHHhCCCCceecHHHHH
Confidence 11 222345666777788887766665566443
No 216
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=98.68 E-value=1.7e-06 Score=92.52 Aligned_cols=177 Identities=8% Similarity=0.072 Sum_probs=104.3
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004892 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (724)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 386 (724)
+.+||+|||+|.||+.+|..|+++|++|+++.|++. +.... +.+......+.. ....+...++.+...
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~---~g~~~~~~~~~~-------~~~~~~~~~~~~~~~ 71 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRE---NGLQVDSVHGDF-------HLPPVQAYRSAEDMP 71 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHh---CCeEEEeCCCCe-------eecCceEEcchhhcC
Confidence 346899999999999999999999999999999863 22111 000000000100 001122334445577
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHH-HhcccCCCCCEEE-Eec-----CCCCC---CCC-e
Q 004892 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKTSSQDRIIG-AHF-----FSPAH---VMP-L 455 (724)
Q Consensus 387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~-~~~~~~~~~r~ig-~h~-----~~p~~---~~~-l 455 (724)
.+|+||.||+. ....+++..+.+.+.++++|++...++...+ +...++ ++++++ ..+ ..|.. .+. -
T Consensus 72 ~~D~vilavK~--~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~-~~~v~~g~~~~~a~~~~pg~v~~~~~g~ 148 (313)
T PRK06249 72 PCDWVLVGLKT--TANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILP-AEHLLGGLCFICSNRVGPGVIHHLAYGR 148 (313)
T ss_pred CCCEEEEEecC--CChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCC-CCcEEEEeeeEeEecCCCeEEEECCCCc
Confidence 89999999983 3335788888888888888877777776543 444443 334443 222 22210 000 0
Q ss_pred eeEecCCCCC-----HHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhh
Q 004892 456 LEIVRTERTS-----AQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAF 498 (724)
Q Consensus 456 veii~~~~t~-----~e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~ 498 (724)
+.+-.....+ .+.++.+..+++..|..+.+..|....+..+++
T Consensus 149 ~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~ 196 (313)
T PRK06249 149 VNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLV 196 (313)
T ss_pred EEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhh
Confidence 1111111112 466777888888888877776776665555443
No 217
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.67 E-value=4.7e-08 Score=103.49 Aligned_cols=122 Identities=18% Similarity=0.292 Sum_probs=79.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHH-HHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK-TIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~-~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 386 (724)
+||+|||+|.||.++|..++..|+ +|+++|++++..+ +.. .+. +.+ .......+++.++++++++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~-g~a~d~~-------~~~-----~~~~~~~~i~~t~d~~~~~ 68 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQ-GKALDMY-------EAS-----PVGGFDTKVTGTNNYADTA 68 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhH-HHHHhhh-------hhh-----hccCCCcEEEecCCHHHhC
Confidence 489999999999999999999887 8999999876433 221 111 101 0011124677788888899
Q ss_pred CCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCcEEE--ecCCCCCHHHHhcccC-CCCCEEEE
Q 004892 387 DVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILA--TNTSTIDLNIVGEKTS-SQDRIIGA 444 (724)
Q Consensus 387 ~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~ii~--s~ts~~~~~~~~~~~~-~~~r~ig~ 444 (724)
+||+||.++. .|.++.+++.+++.++.+ +++|+ ||........+..... .+.|++|+
T Consensus 69 ~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p-~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~ 142 (305)
T TIGR01763 69 NSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSP-NPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQ 142 (305)
T ss_pred CCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecCcHHHHHHHHHHHHCcCHHHEEEe
Confidence 9999999997 245677777788888864 44444 4433332223333322 34566665
No 218
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.63 E-value=5.8e-07 Score=93.85 Aligned_cols=190 Identities=13% Similarity=0.103 Sum_probs=129.2
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc----c
Q 004892 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----S 383 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~ 383 (724)
...|+|||+|.||+.+|.+++++|+.|.+|+|+.++.+...+... + + .++..+.++ +
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~-------~-~-----------k~i~~~~sieefV~ 63 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERA-------K-G-----------KNIVPAYSIEEFVA 63 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCc-------c-C-----------CCccccCcHHHHHH
Confidence 356999999999999999999999999999999999887654211 0 1 234444444 3
Q ss_pred CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhc--cc-CCCCCEEEEec-------CCCCCCC
Q 004892 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGE--KT-SSQDRIIGAHF-------FSPAHVM 453 (724)
Q Consensus 384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~--~~-~~~~r~ig~h~-------~~p~~~~ 453 (724)
.++.---|+.+|--. .....++++|.+++.++-||++...+.-.+.+.. .+ ..--.|+|+-. .+.|.
T Consensus 64 ~Le~PRkI~lMVkAG-~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPS-- 140 (473)
T COG0362 64 SLEKPRKILLMVKAG-TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPS-- 140 (473)
T ss_pred HhcCCceEEEEEecC-CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCC--
Confidence 356667788887533 3346788999999999999997554433332222 22 23335666654 23333
Q ss_pred CeeeEecCCCCCHHHHHHHHHHHHHcCCe----e--EEEc-CCCchhh----hhhh---hHHHHHHHHHHHcC--CCHHH
Q 004892 454 PLLEIVRTERTSAQVILDLMTVGKIIKKV----P--VVVG-NCTGFAV----NRAF---FPYSQSARLLVSLG--VDVFR 517 (724)
Q Consensus 454 ~lveii~~~~t~~e~~~~~~~l~~~lGk~----~--v~v~-d~pG~i~----nRl~---~~~~~Ea~~l~~~G--v~~~~ 517 (724)
|+||. ++++.+.+.+++..+..+ | .+++ +..|..+ |=+= +.++.|+..++..| .+.++
T Consensus 141 ----iMpGG--~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~e 214 (473)
T COG0362 141 ----IMPGG--QKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEE 214 (473)
T ss_pred ----cCCCC--CHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 44554 799999999999887532 2 2343 5566555 5442 35677999999985 59999
Q ss_pred HHHHHHhc
Q 004892 518 IDSAIRSF 525 (724)
Q Consensus 518 ID~a~~~~ 525 (724)
|-.+...+
T Consensus 215 i~~vF~~W 222 (473)
T COG0362 215 IAEVFEEW 222 (473)
T ss_pred HHHHHHHh
Confidence 99998444
No 219
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.62 E-value=3.7e-07 Score=97.17 Aligned_cols=111 Identities=17% Similarity=0.112 Sum_probs=76.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCC
Q 004892 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (724)
Q Consensus 310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 389 (724)
||+|||+|.||+.+|..|+++|++|++++++++..+...+. .+ ....+. ....+..+++.+.++++|
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~---g~--~~~~~~--------~~~~~~~~~~~~~~~~~d 68 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNEN---GL--RLEDGE--------ITVPVLAADDPAELGPQD 68 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHc---CC--cccCCc--------eeecccCCCChhHcCCCC
Confidence 79999999999999999999999999999988776654321 00 000110 001122344444458999
Q ss_pred EEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH-HHHhccc
Q 004892 390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKT 435 (724)
Q Consensus 390 lVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~~~~~~~ 435 (724)
+||.|++ .....++++++.+.+.++++|++...++.. ..+...+
T Consensus 69 ~vila~k--~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~ 113 (304)
T PRK06522 69 LVILAVK--AYQLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYI 113 (304)
T ss_pred EEEEecc--cccHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhc
Confidence 9999998 444578889999988888877776666653 3344433
No 220
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.61 E-value=5.8e-07 Score=88.39 Aligned_cols=113 Identities=12% Similarity=0.059 Sum_probs=83.0
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004892 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (724)
Q Consensus 310 kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (724)
||+|||+ |.||.-++..|.++|+.|++ ++|
T Consensus 2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~~-------------------------------------------------~~~ 32 (197)
T PRK06444 2 MEIIIGKNGRLGRVLCSILDDNGLGVYI-------------------------------------------------KKA 32 (197)
T ss_pred EEEEEecCCcHHHHHHHHHHhCCCEEEE-------------------------------------------------CCC
Confidence 7999999 99999999999999999861 368
Q ss_pred CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCC----eeeEecCCCC
Q 004892 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP----LLEIVRTERT 464 (724)
Q Consensus 389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~----lveii~~~~t 464 (724)
|+||.|+| .....++++++. .+|++.+|.... +... ..+|+|.||...|.... -.-++..+.+
T Consensus 33 DlVilavP--v~~~~~~i~~~~------~~v~Dv~SvK~~--i~~~---~~~~vg~HPMfGp~~a~~~lf~~~iv~~~~~ 99 (197)
T PRK06444 33 DHAFLSVP--IDAALNYIESYD------NNFVEISSVKWP--FKKY---SGKIVSIHPLFGPMSYNDGVHRTVIFINDIS 99 (197)
T ss_pred CEEEEeCC--HHHHHHHHHHhC------CeEEeccccCHH--HHHh---cCCEEecCCCCCCCcCcccccceEEEECCCC
Confidence 99999999 777677777654 256666665432 2222 34799999976543321 1223346678
Q ss_pred CHHHHHHHHHHHHHcCCeeEEE
Q 004892 465 SAQVILDLMTVGKIIKKVPVVV 486 (724)
Q Consensus 465 ~~e~~~~~~~l~~~lGk~~v~v 486 (724)
+++.++.++.+++ |..++.+
T Consensus 100 ~~~~~~~~~~l~~--G~~~~~~ 119 (197)
T PRK06444 100 RDNYLNEINEMFR--GYHFVEM 119 (197)
T ss_pred CHHHHHHHHHHHc--CCEEEEe
Confidence 8888999999998 8777776
No 221
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=98.60 E-value=7.4e-08 Score=100.22 Aligned_cols=97 Identities=30% Similarity=0.387 Sum_probs=76.1
Q ss_pred EEEEcC-CCCcHHHHHHHHHCC----CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccC-ccC
Q 004892 311 VAVIGG-GLMGSGIATAHILNN----IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD-YSE 384 (724)
Q Consensus 311 I~VIG~-G~mG~~iA~~la~~G----~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~ 384 (724)
|+|||+ |.||.++|..++..| .+|+++|+++++++.....+++..... ...++..++| +++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-------------~~~~i~~~~d~~~~ 67 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-------------ADIKVSITDDPYEA 67 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-------------cCcEEEECCchHHH
Confidence 689999 999999999999999 799999999988777655544432211 1135666777 588
Q ss_pred cCCCCEEEE--------------cccCChHHHHHHHHHHHhhCCCCcEEEe
Q 004892 385 FKDVDMVIE--------------AVIESVPLKQKIFSELEKACPPHCILAT 421 (724)
Q Consensus 385 ~~~aDlVIe--------------av~e~~~~k~~v~~~l~~~~~~~~ii~s 421 (724)
+++||+||+ .+.++.++++++.+++.+++ ++++++.
T Consensus 68 ~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~ 117 (263)
T cd00650 68 FKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIV 117 (263)
T ss_pred hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEE
Confidence 999999999 66778889999999999998 5555543
No 222
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.46 E-value=4.9e-07 Score=96.78 Aligned_cols=100 Identities=15% Similarity=0.039 Sum_probs=77.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (724)
++|+|||+|.||.++|..+...|++|++||++++..... +...+++ +.+++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----------------------------~~~~~~l~ell~~ 198 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----------------------------LTYKDSVKEAIKD 198 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----------------------------hhccCCHHHHHhc
Confidence 479999999999999999999999999999997542110 1112334 56789
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH--HHHhcccC
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS 436 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~ 436 (724)
||+|+.++|...+....+-+++.+.++++++|++.+.+..+ ..+...+.
T Consensus 199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~ 249 (330)
T PRK12480 199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVN 249 (330)
T ss_pred CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHH
Confidence 99999999999888888888888999999988766555444 34545443
No 223
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.44 E-value=1e-05 Score=79.79 Aligned_cols=147 Identities=16% Similarity=0.110 Sum_probs=96.2
Q ss_pred cHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccc-ccCccCcCCCCEEEEcccCC
Q 004892 320 GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSEFKDVDMVIEAVIES 398 (724)
Q Consensus 320 G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~~~aDlVIeav~e~ 398 (724)
|+.+|..++.+||+|++.|.|.+-.+... +++.-+.| +.. ++|.++++.+.+.|.-.|-.
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~------w~~vedAG-------------V~vv~dD~eaa~~~Ei~VLFTPFG 93 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEH------WKRVEDAG-------------VEVVSDDAEAAEHGEIHVLFTPFG 93 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHH------HHHHHhcC-------------cEEecCchhhhhcceEEEEecccc
Confidence 88999999999999999999877655431 11111222 333 44558899999999988833
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhc----ccCCCCCEEEEecCCCCCC----CCeeeEecCCCC------
Q 004892 399 VPLKQKIFSELEKACPPHCILATNTSTIDLNIVGE----KTSSQDRIIGAHFFSPAHV----MPLLEIVRTERT------ 464 (724)
Q Consensus 399 ~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~----~~~~~~r~ig~h~~~p~~~----~~lveii~~~~t------ 464 (724)
. ..-.+.++|.++++.+++|+ ||.+.++-.+.. .+..+.+-+|+..+.|..+ ....-++.+..|
T Consensus 94 k-~T~~Iarei~~hvpEgAVic-nTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~yviagr~t~g~elA 171 (340)
T COG4007 94 K-ATFGIAREILEHVPEGAVIC-NTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGHYVIAGRSTEGKELA 171 (340)
T ss_pred h-hhHHHHHHHHhhCcCCcEec-ccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCCceEEEeccCCCceeec
Confidence 1 34467788999999999874 666665544433 3334434445444443311 111223443333
Q ss_pred CHHHHHHHHHHHHHcCCeeEEEc
Q 004892 465 SAQVILDLMTVGKIIKKVPVVVG 487 (724)
Q Consensus 465 ~~e~~~~~~~l~~~lGk~~v~v~ 487 (724)
++|.++++..+++..||.+.++.
T Consensus 172 TeEQi~r~velaes~Gk~~yv~p 194 (340)
T COG4007 172 TEEQIERCVELAESTGKEVYVLP 194 (340)
T ss_pred cHHHHHHHHHHHHhcCCceEecC
Confidence 78999999999999999998873
No 224
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=98.43 E-value=3.4e-06 Score=80.88 Aligned_cols=141 Identities=24% Similarity=0.277 Sum_probs=99.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEEC
Q 004892 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE 106 (724)
Q Consensus 27 al~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~ 106 (724)
.+++.+.+-|.+.++.++++ +++.|+|.=. |-|+++.. ...++ +.|...++||++.|+
T Consensus 9 ~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in----SPGG~v~~----------------~~~I~-~~i~~~~~pvv~~v~ 66 (172)
T cd07015 9 QITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADA----------------AGNIV-QRIQQSKIPVIIYVY 66 (172)
T ss_pred EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE----CCCCCHHH----------------HHHHH-HHHHhcCcCEEEEEe
Confidence 36778888899999998865 5677777311 12333321 12344 557788999999999
Q ss_pred ---ccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcch--------hhh------hccccc--HHHHHHHHHcCC
Q 004892 107 ---GLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGG--------TQR------LPRLVG--LSKAIEMMLLSK 167 (724)
Q Consensus 107 ---G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~--------~~~------l~r~~G--~~~a~~l~ltg~ 167 (724)
|.|..+|.-++++||.+++.++++++....-.|.-+.... +.. +.+.-| ...+..++....
T Consensus 67 p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~ 146 (172)
T cd07015 67 PPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKDL 146 (172)
T ss_pred cCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhc
Confidence 9999999999999999999999999988774332110000 011 111223 466778888889
Q ss_pred CCCHHHHHHCCCcceecCc-chH
Q 004892 168 SITSEEGWKLGLIDAVVTS-EEL 189 (724)
Q Consensus 168 ~i~a~eA~~~Glv~~vv~~-~~l 189 (724)
.++++||++.|++|.|+.. ++|
T Consensus 147 ~lta~EA~~~G~iD~ia~~~~~l 169 (172)
T cd07015 147 SLTPEEALKYGVIEVVARDINEL 169 (172)
T ss_pred CcCHHHHHHcCCceeeeCCHHHH
Confidence 9999999999999999854 444
No 225
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.41 E-value=7e-07 Score=83.46 Aligned_cols=101 Identities=24% Similarity=0.298 Sum_probs=70.4
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc
Q 004892 309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (724)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 385 (724)
.||+|||+ |..|..+|..+...+. +++++|++++.++....++++....... .......+++++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~-------------~~~i~~~~~~~~ 67 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPS-------------PVRITSGDYEAL 67 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTE-------------EEEEEESSGGGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccc-------------cccccccccccc
Confidence 48999999 9999999999999876 8999999998766655444443221111 112223667999
Q ss_pred CCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEEecC
Q 004892 386 KDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT 423 (724)
Q Consensus 386 ~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (724)
++||+||.+.-. +..+.+++..++.++. ++.+++..|
T Consensus 68 ~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvt 118 (141)
T PF00056_consen 68 KDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVT 118 (141)
T ss_dssp TTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-S
T ss_pred ccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeC
Confidence 999999988722 3446667777788887 445554433
No 226
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.41 E-value=9.9e-07 Score=94.03 Aligned_cols=85 Identities=13% Similarity=0.089 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHh---CHHHHHHHHHHHHhhhCC-CCC
Q 004892 620 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAV---GANYVYTSLKKWSQLYGN-FFK 695 (724)
Q Consensus 620 ~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~---G~~~~~~~~~~~~~~~~~-~~~ 695 (724)
++++.||++.++++||+.++++|++ |+++||.++..|+|+|+..-|||++.|.. |++.+......++...++ .+.
T Consensus 186 ~G~i~nrl~~a~~~EA~~l~~~g~~-~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~ 264 (308)
T PRK06129 186 DGFVLNRLQGALLREAFRLVADGVA-SVDDIDAVIRDGLGLRWSFMGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQ 264 (308)
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCccCcCHHHHHhccccccHHHHHHHHHHHHHhhccccCC
Confidence 5789999999999999999999999 99999999999999985456999999987 999999999999888875 788
Q ss_pred CCHHHHHHHH
Q 004892 696 PSRFLEERAT 705 (724)
Q Consensus 696 p~~~l~~~~k 705 (724)
|+|++.++++
T Consensus 265 ~~~~~~~~~~ 274 (308)
T PRK06129 265 PVPWDGELVA 274 (308)
T ss_pred CchhhHHHHH
Confidence 9999998883
No 227
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=98.38 E-value=1.6e-06 Score=82.96 Aligned_cols=130 Identities=17% Similarity=0.208 Sum_probs=91.4
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEE
Q 004892 28 LAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (724)
Q Consensus 28 l~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav 105 (724)
++..+.+++.+.|..++.++.++.|+| .+.|+ ++. ....++ +.|..+++|+++.+
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG------~v~----------------~~~~i~-~~i~~~~~~v~~~~ 65 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLYINSPGG------DVF----------------AGMAIY-DTIKFIKADVVTII 65 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCC------cHH----------------HHHHHH-HHHHhcCCCceEEE
Confidence 567889999999999998877777666 34433 221 122445 66788999999999
Q ss_pred CccccchhHHHHhhcC--EEEEeCCceeeCcccccCccCCcchhh------------------hhccc--ccHHHHHHHH
Q 004892 106 EGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQ------------------RLPRL--VGLSKAIEMM 163 (724)
Q Consensus 106 ~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G~~P~~g~~~------------------~l~r~--~G~~~a~~l~ 163 (724)
.|.|.++|.-++++|| .|++.++++|.+....-+. +|... .+.+. .......+++
T Consensus 66 ~g~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~---~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~ 142 (162)
T cd07013 66 DGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGT---LGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADL 142 (162)
T ss_pred EeehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 9999999999999999 6777777777654332111 11110 01111 2345566677
Q ss_pred HcCCCCCHHHHHHCCCccee
Q 004892 164 LLSKSITSEEGWKLGLIDAV 183 (724)
Q Consensus 164 ltg~~i~a~eA~~~Glv~~v 183 (724)
-.+..++|+||++.||||++
T Consensus 143 ~~~~~~sa~eA~~~GliD~i 162 (162)
T cd07013 143 ERDTWLSAREAVEYGFADTI 162 (162)
T ss_pred cCCccccHHHHHHcCCCCcC
Confidence 77888899999999999985
No 228
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=98.34 E-value=1.3e-05 Score=82.33 Aligned_cols=165 Identities=15% Similarity=0.070 Sum_probs=116.3
Q ss_pred CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCCCCEEEEcccCChHHHHHHHHHHH
Q 004892 332 IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELE 410 (724)
Q Consensus 332 ~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVIeav~e~~~~k~~v~~~l~ 410 (724)
++|++++|++++++...+. ++ +..+.+. +.+.+||+||.||+ ++...+++.++.
T Consensus 10 ~~I~v~~R~~e~~~~l~~~----------------------~g-~~~~~~~~e~~~~aDiIiLaVk--P~~i~~vl~~l~ 64 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKE----------------------LG-IVASSDAQEAVKEADVVFLAVK--PQDLEEVLSELK 64 (245)
T ss_pred CeEEEEcCCHHHHHHHHHH----------------------cC-cEEeCChHHHHhhCCEEEEEeC--HHHHHHHHHHHh
Confidence 6899999999886654221 01 2223333 45688999999999 788889999998
Q ss_pred hhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEe-cCCCCCHHHHHHHHHHHHHcCCeeEEEcC-
Q 004892 411 KACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTERTSAQVILDLMTVGKIIKKVPVVVGN- 488 (724)
Q Consensus 411 ~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii-~~~~t~~e~~~~~~~l~~~lGk~~v~v~d- 488 (724)
+.+.++.+|+|...+++++++...+....+++.+.|..|...+..+..+ .++..+++..+.+..++..+|+...+-.+
T Consensus 65 ~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~ 144 (245)
T TIGR00112 65 SEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVELPEAL 144 (245)
T ss_pred hhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHH
Confidence 8777788999999999999998888655578889998887777666655 56778889999999999999977654211
Q ss_pred CCchhh-----hhhhhHHHHHHH--HHHHcCCCHHHHHHHH
Q 004892 489 CTGFAV-----NRAFFPYSQSAR--LLVSLGVDVFRIDSAI 522 (724)
Q Consensus 489 ~pG~i~-----nRl~~~~~~Ea~--~l~~~Gv~~~~ID~a~ 522 (724)
...+.+ .-++ .++.|++ ..++.|+++++-.+.+
T Consensus 145 ~~~~talsgsgPA~~-~~~~~al~~~~v~~Gl~~~~A~~lv 184 (245)
T TIGR00112 145 MDAVTALSGSGPAYV-FLFIEALADAGVKQGLPRELALELA 184 (245)
T ss_pred cchHHhhccCcHHHH-HHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 111111 1111 2222322 3446688888877776
No 229
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.33 E-value=8.9e-07 Score=94.18 Aligned_cols=98 Identities=26% Similarity=0.313 Sum_probs=69.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 386 (724)
+||+|||+|.+|+++|..|+..| ++|+++|++++.++.....+.+....... . ..+. +.++++++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~-~-----------~~i~-~~~~~~l~ 67 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPS-P-----------VKIK-AGDYSDCK 67 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCC-C-----------eEEE-cCCHHHhC
Confidence 48999999999999999999999 58999999998876655444332110000 0 0122 34567789
Q ss_pred CCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEE
Q 004892 387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA 420 (724)
Q Consensus 387 ~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~ 420 (724)
+||+||.++.. +..+.+++..++.++++ +++++
T Consensus 68 ~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~-~~~vi 114 (306)
T cd05291 68 DADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGF-DGIFL 114 (306)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence 99999999853 34456777778888776 44444
No 230
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.33 E-value=4.1e-07 Score=94.61 Aligned_cols=170 Identities=16% Similarity=0.117 Sum_probs=130.2
Q ss_pred CcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCCcccccchhHHHHHH
Q 004892 13 DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV 91 (724)
Q Consensus 13 ~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 91 (724)
.+++.+.++ |+.|..|.++..+|..-++.+..+..+++..+|+.. +.|++|.|..++....... .......+++++
T Consensus 65 ~~~~~~dmv-ieav~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~f-spa~~m~LlEii- 141 (380)
T KOG1683|consen 65 TGFANADMV-IEAVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFF-SPAHWMQLLEII- 141 (380)
T ss_pred cccccccee-ccchhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhcccccc-CHHHHHHHHHHH-
Confidence 478888887 889999999999999999999999889999998877 6799999998876532221 111223355666
Q ss_pred HHHhcCCCcEEEEECccccchh--HHHHhhcCEEEEe--CCceeeCcccccC-ccCCcchhhhhcccccHHHHHHHHHcC
Q 004892 92 NLIEDCKKPIVAAVEGLALGGG--LELAMGCHARIAA--PKTQLGLPELTLG-VIPGFGGTQRLPRLVGLSKAIEMMLLS 166 (724)
Q Consensus 92 ~~l~~~~kp~Iaav~G~a~GgG--~~lalacD~ria~--~~a~f~~pe~~~G-~~P~~g~~~~l~r~~G~~~a~~l~ltg 166 (724)
....+++.|+.+++||++--|+ +-++.+|+||+.. ..-..+..+..++ ..|.+-. -.+...+|...+-.-+-.+
T Consensus 142 ~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~i-D~~~t~fGf~~g~~~L~d~ 220 (380)
T KOG1683|consen 142 LALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLI-DSLITKFGFRVGERALADG 220 (380)
T ss_pred HhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHH-HHHHHhcCccccHHHHhhc
Confidence 5689999999999999999998 8899999999998 4434467777777 3444432 2233334555555556778
Q ss_pred CCCCHHHHHHCCCcceecCc
Q 004892 167 KSITSEEGWKLGLIDAVVTS 186 (724)
Q Consensus 167 ~~i~a~eA~~~Glv~~vv~~ 186 (724)
.-++..||++-|+++.+.|.
T Consensus 221 ~gfdv~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 221 VGFDVAEALAVGLGDEIGPR 240 (380)
T ss_pred cCccHHHHHhhccchhccch
Confidence 88999999999999999984
No 231
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=98.30 E-value=1.3e-06 Score=86.49 Aligned_cols=104 Identities=19% Similarity=0.264 Sum_probs=72.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC---HHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc--
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN---SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-- 382 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~---~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-- 382 (724)
.||+|||+|.||+.+|..|++.|+ +++++|.+ ++.+.+-.. ....-|+...+.+...+.++....+.
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~-------~~~~iG~~Ka~~~~~~l~~inp~~~i~~ 94 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQY-------KASQVGEPKTEALKENISEINPYTEIEA 94 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccC-------ChhhCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 579999999999999999999999 69999998 555443110 00112222223333344443332222
Q ss_pred -----------cCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEE
Q 004892 383 -----------SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (724)
Q Consensus 383 -----------~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~ 420 (724)
+.++++|+||+| .++.+.+..++.++....+...+++
T Consensus 95 ~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~ 142 (200)
T TIGR02354 95 YDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIA 142 (200)
T ss_pred eeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 236789999999 6899999999999988877766665
No 232
>PRK10949 protease 4; Provisional
Probab=98.29 E-value=5.6e-06 Score=95.08 Aligned_cols=162 Identities=20% Similarity=0.230 Sum_probs=104.5
Q ss_pred cCcEEEEEeCCC----C--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchh
Q 004892 12 NDGVAIITLINP----P--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (724)
Q Consensus 12 ~~~v~~i~l~~p----~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (724)
++.|++|+++.+ + .+.++. +.+.+.|+.+..|++||+|||+=..+ |+.... .+.
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInSp----GGs~~a-------------se~ 384 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNSP----GGSVTA-------------SEV 384 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecCC----CCcHHH-------------HHH
Confidence 567999998654 1 233443 56788899999999999999974321 221110 011
Q ss_pred HHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCccc------------ccCccCCcchhhhh---
Q 004892 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL------------TLGVIPGFGGTQRL--- 150 (724)
Q Consensus 86 ~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~G~~P~~g~~~~l--- 150 (724)
..+.+ ..++...|||||.+.+.|.-||.-++++||.++|.+.+..|.-.+ ++|+-+..-.+-.+
T Consensus 385 i~~~i-~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~ 463 (618)
T PRK10949 385 IRAEL-AAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADV 463 (618)
T ss_pred HHHHH-HHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCc
Confidence 22333 335667899999999999999999999999999998766554332 24433221111000
Q ss_pred -------------------------------cccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHH
Q 004892 151 -------------------------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRL 195 (724)
Q Consensus 151 -------------------------------~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~ 195 (724)
.|.+..... +-+..|+.+++++|++.||||++-..++..+.+.+
T Consensus 464 ~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v-~~ia~Grv~tg~~A~~~GLVD~lG~~~~ai~~a~~ 538 (618)
T PRK10949 464 SITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQI-DKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAE 538 (618)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHH-HHHhcCCcccHHHHHHcCCCccCCCHHHHHHHHHH
Confidence 111222222 22568999999999999999999765555444444
No 233
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.28 E-value=5.2e-06 Score=77.53 Aligned_cols=93 Identities=17% Similarity=0.220 Sum_probs=63.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (724)
++|+|||.|..|.+.|.+|...|++|++..+... ..+++. +.| +...+-.|+++.
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~-----------~~G-------------f~v~~~~eAv~~ 60 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAK-----------ADG-------------FEVMSVAEAVKK 60 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHH-----------HTT--------------ECCEHHHHHHC
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHH-----------HCC-------------CeeccHHHHHhh
Confidence 6899999999999999999999999999998876 333332 222 222333377899
Q ss_pred CCEEEEcccCChHHHHHHH-HHHHhhCCCCcEEEecCCCCCH
Q 004892 388 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTIDL 428 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~-~~l~~~~~~~~ii~s~ts~~~~ 428 (724)
+|+|+..+| .+.-.++| ++|.+.++++.++.- +.++.+
T Consensus 61 aDvV~~L~P--D~~q~~vy~~~I~p~l~~G~~L~f-ahGfni 99 (165)
T PF07991_consen 61 ADVVMLLLP--DEVQPEVYEEEIAPNLKPGATLVF-AHGFNI 99 (165)
T ss_dssp -SEEEE-S---HHHHHHHHHHHHHHHS-TT-EEEE-SSSHHH
T ss_pred CCEEEEeCC--hHHHHHHHHHHHHhhCCCCCEEEe-CCcchh
Confidence 999999999 66667888 789999999998753 344433
No 234
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.21 E-value=3.1e-06 Score=88.26 Aligned_cols=86 Identities=17% Similarity=0.168 Sum_probs=63.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (724)
++|+|||.|.||.++|.+|...|++|+++++.....+.+. ..| ....+-.+.++.|
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~-----------~~G-------------~~v~sl~Eaak~A 72 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAK-----------ADG-------------FEVMSVSEAVRTA 72 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHH-----------HcC-------------CEECCHHHHHhcC
Confidence 6899999999999999999999999999987643322211 111 1112222678899
Q ss_pred CEEEEcccCChHHHHHHH-HHHHhhCCCCcEEE
Q 004892 389 DMVIEAVIESVPLKQKIF-SELEKACPPHCILA 420 (724)
Q Consensus 389 DlVIeav~e~~~~k~~v~-~~l~~~~~~~~ii~ 420 (724)
|+|+.++|. .+. +.++ +++.+.++++++++
T Consensus 73 DVV~llLPd-~~t-~~V~~~eil~~MK~GaiL~ 103 (335)
T PRK13403 73 QVVQMLLPD-EQQ-AHVYKAEVEENLREGQMLL 103 (335)
T ss_pred CEEEEeCCC-hHH-HHHHHHHHHhcCCCCCEEE
Confidence 999999996 444 4565 56889999999775
No 235
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.20 E-value=9e-06 Score=80.57 Aligned_cols=135 Identities=19% Similarity=0.183 Sum_probs=89.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEE
Q 004892 26 NALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (724)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia 103 (724)
..++..+...+...|..++.++..+-|.| .+.| +|+. ....++ +.|...+.|+++
T Consensus 38 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpG------G~v~----------------~g~~I~-d~i~~~~~~v~t 94 (200)
T PRK00277 38 GEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG------GSVT----------------AGLAIY-DTMQFIKPDVST 94 (200)
T ss_pred CEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCC------CcHH----------------HHHHHH-HHHHhcCCCEEE
Confidence 35788899999999998886644343333 3433 2221 123445 567788899999
Q ss_pred EECccccchhHHHHhhcC--EEEEeCCceeeCcccccCccCCcchh------------------hhhcccc--cHHHHHH
Q 004892 104 AVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGT------------------QRLPRLV--GLSKAIE 161 (724)
Q Consensus 104 av~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G~~P~~g~~------------------~~l~r~~--G~~~a~~ 161 (724)
.+.|.|.+.|..++++++ .|++.++++|.+....-|. +|-+ ..+...- ......+
T Consensus 95 ~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~---~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~ 171 (200)
T PRK00277 95 ICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGF---QGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEK 171 (200)
T ss_pred EEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 999999999999999743 5666666666554432111 1111 1112222 3355666
Q ss_pred HHHcCCCCCHHHHHHCCCcceecCc
Q 004892 162 MMLLSKSITSEEGWKLGLIDAVVTS 186 (724)
Q Consensus 162 l~ltg~~i~a~eA~~~Glv~~vv~~ 186 (724)
++-.+..++|+||++.||||+|+..
T Consensus 172 ~~~~~~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 172 DTDRDNFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred HhhCCccccHHHHHHcCCccEEeec
Confidence 7778889999999999999999854
No 236
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.20 E-value=3e-06 Score=89.94 Aligned_cols=98 Identities=23% Similarity=0.266 Sum_probs=68.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 386 (724)
.||+|||+|.+|.++|..++..|. +++++|++++.++....++.+..... ....+..++++++++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~-------------~~~~v~~~~dy~~~~ 70 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFL-------------KNPKIEADKDYSVTA 70 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccC-------------CCCEEEECCCHHHhC
Confidence 499999999999999999998886 79999999877655443333321000 002455567888899
Q ss_pred CCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEE
Q 004892 387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCIL 419 (724)
Q Consensus 387 ~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii 419 (724)
+||+||.+.-. +..+.+++.+++.++.+...+|
T Consensus 71 ~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vi 117 (312)
T cd05293 71 NSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILL 117 (312)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEE
Confidence 99999987621 3335666677788886554433
No 237
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.20 E-value=5.6e-06 Score=88.92 Aligned_cols=101 Identities=15% Similarity=0.099 Sum_probs=73.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (724)
++|+|||.|.||..+|..+...|++|++||++++.... . ..+ ... .++ +.+++
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~-~-----------~~~-------------~~~-~~l~ell~~ 204 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAE-K-----------ELG-------------AEY-RPLEELLRE 204 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhH-H-----------HcC-------------CEe-cCHHHHHhh
Confidence 68999999999999999999999999999998653211 0 001 111 233 56789
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH--HHHhccc
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKT 435 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~ 435 (724)
||+|+.++|.+.+...-+-++..+.++++++++..+.+-.+ ..+...+
T Consensus 205 aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL 254 (333)
T PRK13243 205 SDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKAL 254 (333)
T ss_pred CCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHH
Confidence 99999999988887777667788889999988754444333 3444444
No 238
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=98.17 E-value=1.2e-05 Score=85.63 Aligned_cols=176 Identities=11% Similarity=-0.002 Sum_probs=99.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (724)
+||+|||+|.||+-+|..|+++|++|++++|+.+.+++..+. +.+. ....|... .-.+.. .+.+....+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~--~Gl~-i~~~g~~~-------~~~~~~-~~~~~~~~~ 71 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQA--GGLT-LVEQGQAS-------LYAIPA-ETADAAEPI 71 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhc--CCeE-EeeCCcce-------eeccCC-CCccccccc
Confidence 479999999999999999999999999999998776654321 0000 00011100 001111 112335688
Q ss_pred CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH-HHhcccCCCCCEE-EEecCCCCCCCCe-e------eEe
Q 004892 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRII-GAHFFSPAHVMPL-L------EIV 459 (724)
Q Consensus 389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-~~~~~~~~~~r~i-g~h~~~p~~~~~l-v------eii 459 (724)
|+||.|+- ..-..+.++.+.+++.++++|++.-.++... .+...+.. ++++ |..++......|. + .+.
T Consensus 72 D~viv~vK--~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~~-~~v~~g~~~~ga~~~~pg~v~~~~~g~~~ 148 (305)
T PRK05708 72 HRLLLACK--AYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVPH-ARCIFASSTEGAFRDGDWRVVFAGHGFTW 148 (305)
T ss_pred CEEEEECC--HHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCCC-CcEEEEEeeeceecCCCCEEEEeceEEEE
Confidence 99999984 3344577888999999999888777776654 34444432 2333 3333221111111 0 111
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhh
Q 004892 460 RTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFF 499 (724)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~ 499 (724)
-|.. +.+..+.+.+++..-|....+..|..+.+.+.+++
T Consensus 149 ~G~~-~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~ 187 (305)
T PRK05708 149 LGDP-RNPTAPAWLDDLREAGIPHEWTVDILTRLWRKLAL 187 (305)
T ss_pred EcCC-CCcchHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Confidence 1211 12334555556666565554445555555555543
No 239
>PRK15076 alpha-galactosidase; Provisional
Probab=98.16 E-value=6.3e-06 Score=91.30 Aligned_cols=77 Identities=21% Similarity=0.264 Sum_probs=55.4
Q ss_pred cceEEEEcCCCCcHHHHH--HHH----HCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccC
Q 004892 308 VRKVAVIGGGLMGSGIAT--AHI----LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD 381 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~--~la----~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 381 (724)
|.||+|||+|.||.+.+. .++ ..|.+|+++|+++++++.+...++..+... + ...++..++|
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~---~---------~~~~i~~ttD 68 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESL---G---------ASAKITATTD 68 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhc---C---------CCeEEEEECC
Confidence 368999999999966655 333 246799999999999886555454443322 1 1135777888
Q ss_pred c-cCcCCCCEEEEccc
Q 004892 382 Y-SEFKDVDMVIEAVI 396 (724)
Q Consensus 382 ~-~~~~~aDlVIeav~ 396 (724)
. +++++||+||+++-
T Consensus 69 ~~eal~dADfVv~ti~ 84 (431)
T PRK15076 69 RREALQGADYVINAIQ 84 (431)
T ss_pred HHHHhCCCCEEeEeee
Confidence 4 88999999999883
No 240
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=98.16 E-value=0.00016 Score=76.73 Aligned_cols=166 Identities=14% Similarity=0.095 Sum_probs=100.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (724)
+||+|+|+|.||+-++..|+++|++|+++.|++. +++..+ .|..-.............+.+.+.+..+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~-----------~GL~i~~~~~~~~~~~~~~~~~~~~~~~ 68 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKK-----------KGLRIEDEGGNFTTPVVAATDAEALGPA 68 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHh-----------CCeEEecCCCccccccccccChhhcCCC
Confidence 4899999999999999999999988999888876 555432 1211000000000112223334667799
Q ss_pred CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHH-HhcccCCCCCEEEEecCCCCCCCCeeeEecC------
Q 004892 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKTSSQDRIIGAHFFSPAHVMPLLEIVRT------ 461 (724)
Q Consensus 389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~-~~~~~~~~~r~ig~h~~~p~~~~~lveii~~------ 461 (724)
|+||.++- .-...+.++.+.+.++++++|++.-.++...+ +........-+.|+-+.......+..-...+
T Consensus 69 Dlviv~vK--a~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~i 146 (307)
T COG1893 69 DLVIVTVK--AYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVI 146 (307)
T ss_pred CEEEEEec--cccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEE
Confidence 99999984 55566888999999999998887777766655 3333333222444444333323222211111
Q ss_pred -C--CCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004892 462 -E--RTSAQVILDLMTVGKIIKKVPVVVGN 488 (724)
Q Consensus 462 -~--~t~~e~~~~~~~l~~~lGk~~v~v~d 488 (724)
. .-.++.++.+.+.++.-|-...+..+
T Consensus 147 g~~~~~~~~~~~~i~~~~~~a~~~~~~~~d 176 (307)
T COG1893 147 GELRGGRDELVKALAELFKEAGLEVELHPD 176 (307)
T ss_pred ccCCCCchHHHHHHHHHHHhCCCCeEEcHH
Confidence 1 11336677777777766666555443
No 241
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.14 E-value=3.2e-06 Score=89.93 Aligned_cols=96 Identities=24% Similarity=0.345 Sum_probs=67.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004892 310 KVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (724)
Q Consensus 310 kI~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (724)
||+|||+|.+|.++|..++..| .+|+++|++++.++.....+... ...... ..+ .+++++++++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~-------~~~~~~------~~i-~~~d~~~l~~ 67 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHG-------TPFVKP------VRI-YAGDYADCKG 67 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcc-------ccccCC------eEE-eeCCHHHhCC
Confidence 7999999999999999999999 58999999988765322222111 000000 112 2467788999
Q ss_pred CCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEE
Q 004892 388 VDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCIL 419 (724)
Q Consensus 388 aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii 419 (724)
||+||.+++. +..+.+++.+++.++.+.+.++
T Consensus 68 aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giii 113 (308)
T cd05292 68 ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILL 113 (308)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 9999999964 3445667777888887665444
No 242
>PLN02602 lactate dehydrogenase
Probab=98.13 E-value=4.4e-06 Score=89.75 Aligned_cols=98 Identities=27% Similarity=0.343 Sum_probs=68.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 386 (724)
+||+|||+|.+|+++|..++..|. +++++|++++.++....++.+..... + . ..+..+.++++++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~---~---------~-~~i~~~~dy~~~~ 104 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFL---P---------R-TKILASTDYAVTA 104 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcC---C---------C-CEEEeCCCHHHhC
Confidence 599999999999999999998887 79999999887665444443321100 0 0 1344445788899
Q ss_pred CCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEE
Q 004892 387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCIL 419 (724)
Q Consensus 387 ~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii 419 (724)
+||+||.+.-. +..+.+++..++.+++++..+|
T Consensus 105 daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivi 151 (350)
T PLN02602 105 GSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILL 151 (350)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 99999988621 3345667777788876555433
No 243
>PRK07574 formate dehydrogenase; Provisional
Probab=98.10 E-value=2.5e-05 Score=84.95 Aligned_cols=104 Identities=11% Similarity=0.023 Sum_probs=73.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (724)
++|+|||.|.||..+|..+...|.+|+.||++....+... ..+ +....++ +.++.
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~-----------~~g-------------~~~~~~l~ell~~ 248 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQ-----------ELG-------------LTYHVSFDSLVSV 248 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHh-----------hcC-------------ceecCCHHHHhhc
Confidence 5899999999999999999999999999999863211100 001 1112234 56799
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH--HHHhcccC
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS 436 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~ 436 (724)
||+|+.++|.+.+...-+=++....++++++|+..+.+-.+ ..+.+.+.
T Consensus 249 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~ 299 (385)
T PRK07574 249 CDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALE 299 (385)
T ss_pred CCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHH
Confidence 99999999988887665556788889999988754444333 34444443
No 244
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.10 E-value=2.8e-05 Score=82.13 Aligned_cols=134 Identities=11% Similarity=0.066 Sum_probs=86.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (724)
++|+|||.|.||..+|..+...|++|+.||++... .+. . ....++ +.++.
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~-----------------~~~-~-----------~~~~~l~ell~~ 173 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN-----------------DGI-S-----------SIYMEPEDIMKK 173 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc-----------------cCc-c-----------cccCCHHHHHhh
Confidence 78999999999999999888889999999997421 000 0 001233 45789
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCC--CHHHHhcccCC-CCCEEEEecC--CCC---CCCCeeeEe
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSS-QDRIIGAHFF--SPA---HVMPLLEIV 459 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~~~~~~~~-~~r~ig~h~~--~p~---~~~~lveii 459 (724)
||+|+.++|.+.+...-+-++....++++++++..+.+- ....+...+.. .....++-.| .|. +..+.+-+.
T Consensus 174 aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~~~~nviiT 253 (303)
T PRK06436 174 SDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITETNPDNVILS 253 (303)
T ss_pred CCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccCCCCCEEEC
Confidence 999999999888876666567777889999887443333 33355555542 2333444333 222 234556677
Q ss_pred cC-C-CCCHHHHHH
Q 004892 460 RT-E-RTSAQVILD 471 (724)
Q Consensus 460 ~~-~-~t~~e~~~~ 471 (724)
|+ . .++++..+.
T Consensus 254 PHi~g~~t~e~~~~ 267 (303)
T PRK06436 254 PHVAGGMSGEIMQP 267 (303)
T ss_pred CccccccCHHHHHH
Confidence 76 2 245554443
No 245
>PLN03139 formate dehydrogenase; Provisional
Probab=98.08 E-value=2.8e-05 Score=84.41 Aligned_cols=129 Identities=14% Similarity=0.087 Sum_probs=84.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (724)
++|+|||.|.||..+|..+...|.+|..||++....+... +.| +....++ +.+++
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~l~ell~~ 255 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEK-----------ETG-------------AKFEEDLDAMLPK 255 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHh-----------hcC-------------ceecCCHHHHHhh
Confidence 6899999999999999999999999999998753211100 001 1222344 55789
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH--HHHhcccC-CCCCEEEEecCC--C------CCCCCee
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFFS--P------AHVMPLL 456 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~-~~~r~ig~h~~~--p------~~~~~lv 456 (724)
||+|+.++|.+.+.+.-+-+++...++++++|+..+-+-.+ ..+.+.+. ..-...++--|. | -+.++-+
T Consensus 256 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNv 335 (386)
T PLN03139 256 CDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNH 335 (386)
T ss_pred CCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCe
Confidence 99999999988887776667788889999988744434333 34444443 222333444332 2 2344556
Q ss_pred eEecC
Q 004892 457 EIVRT 461 (724)
Q Consensus 457 eii~~ 461 (724)
-+.|+
T Consensus 336 ilTPH 340 (386)
T PLN03139 336 AMTPH 340 (386)
T ss_pred EEccc
Confidence 66664
No 246
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=98.08 E-value=6.3e-06 Score=87.76 Aligned_cols=97 Identities=24% Similarity=0.279 Sum_probs=68.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 386 (724)
+||+|||+|.+|..+|..++..|. +++++|++++.++....++.+..... . . ..+. ++++++++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~-~-~-----------~~i~-~~~~~~~~ 72 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFT-S-P-----------TKIY-AGDYSDCK 72 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcccc-C-C-----------eEEE-eCCHHHhC
Confidence 599999999999999999999998 89999999888766554444332110 0 0 1232 46678899
Q ss_pred CCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEE
Q 004892 387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA 420 (724)
Q Consensus 387 ~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~ 420 (724)
+||+||.+.-. +..+.+++..++.++.+. ++++
T Consensus 73 ~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~-~~vi 119 (315)
T PRK00066 73 DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFD-GIFL 119 (315)
T ss_pred CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEE
Confidence 99999987632 344566667777777654 4443
No 247
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=98.07 E-value=5.6e-06 Score=87.69 Aligned_cols=97 Identities=24% Similarity=0.334 Sum_probs=69.9
Q ss_pred EEEEcCCCCcHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004892 311 VAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (724)
Q Consensus 311 I~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (724)
|+|||+|.+|+++|..++..| .+++++|++++.++....++.+..... . ..++..+++++++++|
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~---~----------~~~i~~~~~~~~l~~a 67 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFL---A----------TGTIVRGGDYADAADA 67 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcccc---C----------CCeEEECCCHHHhCCC
Confidence 689999999999999999998 589999999988776555444332110 0 0134445667899999
Q ss_pred CEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEEe
Q 004892 389 DMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILAT 421 (724)
Q Consensus 389 DlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~s 421 (724)
|+||.++.- +..+.+++..++.+++ ++++++.
T Consensus 68 DiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv 113 (300)
T cd00300 68 DIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILV 113 (300)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEE
Confidence 999999842 3446677778888888 4555543
No 248
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.05 E-value=3.5e-05 Score=81.89 Aligned_cols=102 Identities=11% Similarity=0.071 Sum_probs=74.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (724)
++|+|||.|.||..+|..+...|++|+.||++.+..... .......++ +.+++
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~--------------------------~~~~~~~~l~e~l~~ 190 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGV--------------------------QSFAGREELSAFLSQ 190 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCc--------------------------eeecccccHHHHHhc
Confidence 689999999999999999999999999999876431100 000011233 56789
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHhcccC
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS 436 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~ 436 (724)
||+|+.++|.+.+...-+-++....++++++++...-+ +.-..+...+.
T Consensus 191 aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~ 241 (312)
T PRK15469 191 TRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALD 241 (312)
T ss_pred CCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHh
Confidence 99999999999988777777788889999988643333 33345555554
No 249
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.04 E-value=7e-06 Score=88.18 Aligned_cols=93 Identities=16% Similarity=0.046 Sum_probs=65.9
Q ss_pred ceEEEEcCCCCcHHHHHHHH-HCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004892 309 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (724)
++|+|||+|.||.++|..++ ..|.+|+.||+++..... ..+...+++ +.++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~---------------------------~~~~~~~~l~ell~ 199 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAA---------------------------TYVDYKDTIEEAVE 199 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHH---------------------------hhccccCCHHHHHH
Confidence 58999999999999999995 468899999998653210 001122344 5678
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH
Q 004892 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 428 (724)
Q Consensus 387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~ 428 (724)
+||+|+.++|.......-+=.++.+.++++++|+..+.+..+
T Consensus 200 ~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~v 241 (332)
T PRK08605 200 GADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLV 241 (332)
T ss_pred hCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCccc
Confidence 999999999977666542224567778999988755555444
No 250
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.03 E-value=7.1e-06 Score=78.02 Aligned_cols=106 Identities=11% Similarity=0.038 Sum_probs=66.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (724)
++|+|+|+|.||.+++..+++.| ++|+++|++++..+...+.+.. .. + .....+..+.+++
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~-------~~-~----------~~~~~~~~~~~~~ 81 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE-------LG-I----------AIAYLDLEELLAE 81 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh-------cc-c----------ceeecchhhcccc
Confidence 68999999999999999999986 7899999999887664432211 00 0 0111122244789
Q ss_pred CCEEEEcccCChH-HHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcc
Q 004892 388 VDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNTSTIDLNIVGEK 434 (724)
Q Consensus 388 aDlVIeav~e~~~-~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~ 434 (724)
+|+||.|+|.+.. .....+. ...+++++++++.++....+.+...
T Consensus 82 ~Dvvi~~~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~ 127 (155)
T cd01065 82 ADLIINTTPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKE 127 (155)
T ss_pred CCEEEeCcCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHH
Confidence 9999999996653 1111111 1235778877755444332344333
No 251
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=98.01 E-value=1.3e-05 Score=82.74 Aligned_cols=112 Identities=20% Similarity=0.167 Sum_probs=80.9
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHC--CC-----cEEEEeCCHHHHHH--HHHHHHHH---HHhhHhcCCCCHHHHHHhhc
Q 004892 307 GVRKVAVIGGGLMGSGIATAHILN--NI-----YVVLKEVNSEYLLK--GIKTIEAN---VRGLVTRGKLTQDKANNALK 374 (724)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~la~~--G~-----~V~l~d~~~~~~~~--~~~~i~~~---~~~~~~~g~~~~~~~~~~~~ 374 (724)
.-.||+|||+|+||++||..+.++ ++ +|..|-+.++.-.+ -+.++-+. .-+++..-. ...
T Consensus 20 ~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~--------lP~ 91 (372)
T KOG2711|consen 20 DPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIK--------LPE 91 (372)
T ss_pred CceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCcc--------CCC
Confidence 347899999999999999998765 22 68888766554332 11111111 112222222 235
Q ss_pred CcccccCc-cCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH
Q 004892 375 MLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 428 (724)
Q Consensus 375 ~i~~~~~~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~ 428 (724)
++.+++|+ +++.|||++|-++| .+....++++|..++++++..+|.+.++..
T Consensus 92 NvvAv~dl~ea~~dADilvf~vP--hQf~~~ic~~l~g~vk~~~~aISL~KG~e~ 144 (372)
T KOG2711|consen 92 NVVAVPDLVEAAKDADILVFVVP--HQFIPRICEQLKGYVKPGATAISLIKGVEV 144 (372)
T ss_pred CeEecchHHHHhccCCEEEEeCC--hhhHHHHHHHHhcccCCCCeEEEeecceec
Confidence 67788888 78899999999999 999999999999999999998887776553
No 252
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.01 E-value=4.9e-05 Score=75.74 Aligned_cols=136 Identities=20% Similarity=0.212 Sum_probs=97.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEE
Q 004892 26 NALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (724)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia 103 (724)
..++..+..++...|..+++++..+.|.| .+.| +++. ....++ +.|..++.|+++
T Consensus 42 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG------G~v~----------------~g~~I~-d~i~~~~~~v~t 98 (207)
T PRK12553 42 GQVDDASANDVMAQLLVLESIDPDRDITLYINSPG------GSVT----------------AGDAIY-DTIQFIRPDVQT 98 (207)
T ss_pred ceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCC------CcHH----------------HHHHHH-HHHHhcCCCcEE
Confidence 45889999999999999987654444444 4433 3321 122445 667888899999
Q ss_pred EECccccchhHHHHhhcC--EEEEeCCceeeCccccc-CccCCcchh------------------hhhcccc--cHHHHH
Q 004892 104 AVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTL-GVIPGFGGT------------------QRLPRLV--GLSKAI 160 (724)
Q Consensus 104 av~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~-G~~P~~g~~------------------~~l~r~~--G~~~a~ 160 (724)
.+.|.|.+.|.-++++|| .|++.++|+|.+..... |. ..|-. ..+.+.- ......
T Consensus 99 ~~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~--~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~ 176 (207)
T PRK12553 99 VCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGG--IRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIR 176 (207)
T ss_pred EEEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCC--CccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 999999999999999999 59999999998876643 21 12211 1112222 345666
Q ss_pred HHHHcCCCCCHHHHHHCCCcceecCc
Q 004892 161 EMMLLSKSITSEEGWKLGLIDAVVTS 186 (724)
Q Consensus 161 ~l~ltg~~i~a~eA~~~Glv~~vv~~ 186 (724)
+++-.+..++|+||++.||||+|+..
T Consensus 177 ~~~~~~~~lta~EA~e~GliD~I~~~ 202 (207)
T PRK12553 177 KDTDRDKWLTAEEAKDYGLVDQIITS 202 (207)
T ss_pred HHHhcCccccHHHHHHcCCccEEcCc
Confidence 77778999999999999999999853
No 253
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.01 E-value=3.1e-05 Score=74.91 Aligned_cols=131 Identities=21% Similarity=0.259 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEE
Q 004892 28 LAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (724)
Q Consensus 28 l~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav 105 (724)
++.....++...+..+..++..+.|+| .+.|+ |+. ....++ +.|..++.|+++.+
T Consensus 18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG------~v~----------------~~~~i~-~~l~~~~~~v~t~~ 74 (171)
T cd07017 18 IDDEVANLIIAQLLYLESEDPKKPIYLYINSPGG------SVT----------------AGLAIY-DTMQYIKPPVSTIC 74 (171)
T ss_pred EcHHHHHHHHHHHHHHHccCCCCceEEEEECCCC------CHH----------------HHHHHH-HHHHhcCCCEEEEE
Confidence 678889999999999998766555555 34333 321 122344 55777899999999
Q ss_pred CccccchhHHHHhhcC--EEEEeCCceeeCcccccCccCCcchhhh-----------------hccc--ccHHHHHHHHH
Q 004892 106 EGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQR-----------------LPRL--VGLSKAIEMML 164 (724)
Q Consensus 106 ~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G~~P~~g~~~~-----------------l~r~--~G~~~a~~l~l 164 (724)
.|.|.++|.-++++|| .|++.++++|.+.+...+.. +. .... +... .......+++-
T Consensus 75 ~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~-g~-~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~ 152 (171)
T cd07017 75 LGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAG-GQ-ASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTD 152 (171)
T ss_pred EeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCC-CC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhh
Confidence 9999999999999999 89999999999888765532 21 1100 1111 23346667777
Q ss_pred cCCCCCHHHHHHCCCccee
Q 004892 165 LSKSITSEEGWKLGLIDAV 183 (724)
Q Consensus 165 tg~~i~a~eA~~~Glv~~v 183 (724)
.+..++++||+++|+||+|
T Consensus 153 ~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 153 RDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred CCccccHHHHHHcCCCccC
Confidence 8999999999999999986
No 254
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=97.97 E-value=1.3e-05 Score=83.85 Aligned_cols=102 Identities=26% Similarity=0.335 Sum_probs=67.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 386 (724)
+||+|||+|.+|+++|..|+..+. +++++|++++.++.-..++.+...... ...++..+.++++++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~------------~~~~i~~~~~y~~~~ 68 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLG------------SDVKITGDGDYEDLK 68 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhcc------------CceEEecCCChhhhc
Confidence 489999999999999999977754 899999996654432222222111000 002233334589999
Q ss_pred CCCEEEEcc--c------------CChHHHHHHHHHHHhhCCCCcEEEecC
Q 004892 387 DVDMVIEAV--I------------ESVPLKQKIFSELEKACPPHCILATNT 423 (724)
Q Consensus 387 ~aDlVIeav--~------------e~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (724)
++|+|+.+. | .|..+.+++-+++.+.++ +.++...|
T Consensus 69 ~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlVvt 118 (313)
T COG0039 69 GADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLVVT 118 (313)
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEEec
Confidence 999999887 3 255677788888888887 44444333
No 255
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.96 E-value=1.6e-05 Score=84.26 Aligned_cols=99 Identities=17% Similarity=0.265 Sum_probs=65.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004892 310 KVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (724)
Q Consensus 310 kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (724)
||+|||+|.+|.++|..++..|. +++++|++++.++....++.+....... . --++. +.+++++++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~-~----------~~~i~-~~~y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYS-T----------NTKIR-AGDYDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCC-C----------CEEEE-ECCHHHhCC
Confidence 79999999999999999999887 7999999988765543333322110000 0 01233 467899999
Q ss_pred CCEEEEcccC------C----------hHHHHHHHHHHHhhCCCCcEEEe
Q 004892 388 VDMVIEAVIE------S----------VPLKQKIFSELEKACPPHCILAT 421 (724)
Q Consensus 388 aDlVIeav~e------~----------~~~k~~v~~~l~~~~~~~~ii~s 421 (724)
||+||.+.-. + ..+.+++..++.++.+ +++++.
T Consensus 69 aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p-~~i~iv 117 (307)
T cd05290 69 ADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTK-EAVIIL 117 (307)
T ss_pred CCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEE
Confidence 9999988721 1 2344555566777774 555543
No 256
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.95 E-value=3e-05 Score=73.34 Aligned_cols=111 Identities=17% Similarity=0.142 Sum_probs=72.0
Q ss_pred EEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCC-CCHHHHHHhhcCcccccCc-cCcCCC
Q 004892 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDY-SEFKDV 388 (724)
Q Consensus 311 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~-~~~~~a 388 (724)
|+|+|+|.||.-+|..|+++|++|+++++++ .++...+ .|. ++...-+..........+. +....+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~-----------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKE-----------QGLTITGPDGDETVQPPIVISAPSADAGPY 68 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHH-----------HCEEEEETTEEEEEEEEEEESSHGHHHSTE
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhh-----------eeEEEEecccceecccccccCcchhccCCC
Confidence 7899999999999999999999999999998 6555321 110 0000000000000011111 245789
Q ss_pred CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHH-Hhccc
Q 004892 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKT 435 (724)
Q Consensus 389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~-~~~~~ 435 (724)
|+||.|+. ..-..++++.+.+++.+++.|++...++...+ +.+..
T Consensus 69 D~viv~vK--a~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~ 114 (151)
T PF02558_consen 69 DLVIVAVK--AYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYF 114 (151)
T ss_dssp SEEEE-SS--GGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHS
T ss_pred cEEEEEec--ccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHc
Confidence 99999996 44556788889999999987877777777544 44444
No 257
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.88 E-value=2e-05 Score=83.83 Aligned_cols=123 Identities=22% Similarity=0.238 Sum_probs=76.6
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC--cEEEEeCCH--HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc
Q 004892 309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS 383 (724)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 383 (724)
+||+|+|+ |..|..++..++..|+ +|+++|+++ +.++.....+.. .+...+ ...++..+++++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d---~~~~~~---------~~~~i~~~~d~~ 68 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYD---ALAAAG---------IDAEIKISSDLS 68 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhh---chhccC---------CCcEEEECCCHH
Confidence 48999998 9999999999999987 499999965 333332222211 111111 001355566788
Q ss_pred CcCCCCEEEEcccC------C--------hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHH--HhcccC-CCCCEEEE
Q 004892 384 EFKDVDMVIEAVIE------S--------VPLKQKIFSELEKACPPHCILATNTSTIDLNI--VGEKTS-SQDRIIGA 444 (724)
Q Consensus 384 ~~~~aDlVIeav~e------~--------~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~--~~~~~~-~~~r~ig~ 444 (724)
++++||+||.++.- + .++.+++...+.+.++ +++++..++..++-. +..... .+.+++|+
T Consensus 69 ~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~~t~~~~~~~g~~~~~viG~ 145 (309)
T cd05294 69 DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDVMTYKALKESGFDKNRVFGL 145 (309)
T ss_pred HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHHHhcCCCHHHEeec
Confidence 89999999999841 1 1446666677888775 556666666554432 222222 23456664
No 258
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=97.87 E-value=0.00022 Score=73.34 Aligned_cols=151 Identities=13% Similarity=0.027 Sum_probs=103.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc--cCcC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--SEFK 386 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~ 386 (724)
.+|||||.|.||.=+|..+.++||.|..+||++- +.+.+.+ ..+. .+++ .+-+
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsdy--ssaa~~y--------g~~~---------------ft~lhdlcer 107 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDY--SSAAEKY--------GSAK---------------FTLLHDLCER 107 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcchh--HHHHHHh--------cccc---------------cccHHHHHhc
Confidence 5799999999999999999999999999999872 2222111 1111 1122 1235
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhh-CCCCcEEEecCCCCC--HHHHhcccCCCCCEEEEecCCCCC-C------CCee
Q 004892 387 DVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAH-V------MPLL 456 (724)
Q Consensus 387 ~aDlVIeav~e~~~~k~~v~~~l~~~-~~~~~ii~s~ts~~~--~~~~~~~~~~~~r~ig~h~~~p~~-~------~~lv 456 (724)
..|+|+.|+. ......+++..-.. ++.+++++..+|... .+.....++..-.++..|++..|. . .|+|
T Consensus 108 hpDvvLlcts--ilsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfV 185 (480)
T KOG2380|consen 108 HPDVVLLCTS--ILSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFV 185 (480)
T ss_pred CCCEEEEEeh--hhhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCceE
Confidence 7899999996 55555555554433 567899988777644 344555566666789999976554 1 1444
Q ss_pred eEe---cCCCCCHHHHHHHHHHHHHcCCeeEEE
Q 004892 457 EIV---RTERTSAQVILDLMTVGKIIKKVPVVV 486 (724)
Q Consensus 457 eii---~~~~t~~e~~~~~~~l~~~lGk~~v~v 486 (724)
-+- ......+|..+....++...|...|.+
T Consensus 186 ydkvRig~~~~r~ercE~fleIf~cegckmVem 218 (480)
T KOG2380|consen 186 YDKVRIGYAASRPERCEFFLEIFACEGCKMVEM 218 (480)
T ss_pred EEEeeccccccchHHHHHHHHHHHhcCCeEEEE
Confidence 331 123346899999999999999988877
No 259
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=97.86 E-value=7.5e-05 Score=85.26 Aligned_cols=103 Identities=16% Similarity=0.032 Sum_probs=71.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (724)
++|+|||.|.||..+|..+...|++|+.||+.... +... +.+ +...+++ +.+++
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~~~l~ell~~ 193 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAE-----------QLG-------------VELVDDLDELLAR 193 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------CEEcCCHHHHHhh
Confidence 68999999999999999999999999999985321 1100 011 1122344 55789
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCC--HHHHhcccC
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS 436 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~ 436 (724)
||+|+.++|.+.+.+.-+=++..+.++++++++..+-+-. -..+.+.+.
T Consensus 194 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~ 244 (525)
T TIGR01327 194 ADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALE 244 (525)
T ss_pred CCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHH
Confidence 9999999998877665544566678899998864444433 345555554
No 260
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=97.82 E-value=0.00039 Score=71.11 Aligned_cols=138 Identities=16% Similarity=0.126 Sum_probs=90.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEE
Q 004892 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (724)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav 105 (724)
-.++++-.+.....++.+... .+-+|-|.=.++.+. |.+-+ ..-......+.+ ..+....+|+|++|
T Consensus 77 G~~~~~g~rKa~R~~~lA~~~-~lPvV~lvDtpGa~~-g~~aE----------~~G~~~~ia~~~-~~~s~~~VP~IsVI 143 (256)
T PRK12319 77 GQPHPEGYRKALRLMKQAEKF-GRPVVTFINTAGAYP-GVGAE----------ERGQGEAIARNL-MEMSDLKVPIIAII 143 (256)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CHhHH----------hccHHHHHHHHH-HHHhCCCCCEEEEE
Confidence 467788888888888888754 455666643333442 33211 011122333444 45778899999999
Q ss_pred CccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecC
Q 004892 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (724)
Q Consensus 106 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~ 185 (724)
-|.|.|||......||+++|.+++.|+. +.|.++.+..+...--...+.+.+ .+++.++.+.|+||+|+|
T Consensus 144 ~G~~~gGgA~a~~~~D~v~m~~~a~~~v------~~pe~~a~il~~~~~~a~~aa~~~----~~~a~~l~~~g~iD~ii~ 213 (256)
T PRK12319 144 IGEGGSGGALALAVADQVWMLENTMYAV------LSPEGFASILWKDGSRATEAAELM----KITAGELLEMGVVDKVIP 213 (256)
T ss_pred eCCcCcHHHHHhhcCCEEEEecCceEEE------cCHHHHHHHHhcCcccHHHHHHHc----CCCHHHHHHCCCCcEecC
Confidence 9999999888888999999999988774 223333333332211112233333 779999999999999996
Q ss_pred c
Q 004892 186 S 186 (724)
Q Consensus 186 ~ 186 (724)
+
T Consensus 214 e 214 (256)
T PRK12319 214 E 214 (256)
T ss_pred C
Confidence 4
No 261
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.82 E-value=1.2e-05 Score=78.40 Aligned_cols=103 Identities=14% Similarity=0.110 Sum_probs=70.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (724)
++|+|||.|.+|..+|..+..-|.+|+.||++........ . .... ..++ +.++.
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~-----------~-------------~~~~-~~~l~ell~~ 91 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD-----------E-------------FGVE-YVSLDELLAQ 91 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH-----------H-------------TTEE-ESSHHHHHHH
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcc-----------c-------------ccce-eeehhhhcch
Confidence 6899999999999999999999999999999988644110 0 0111 2244 55788
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHhcccC
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS 436 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~ 436 (724)
||+|+.++|-+.+...-+=++....++++++|+...-+ +.-+.+.+.+.
T Consensus 92 aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 92 ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred hhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence 99999999977765554445677788999988754444 33344555554
No 262
>PRK05442 malate dehydrogenase; Provisional
Probab=97.78 E-value=3.4e-05 Score=82.28 Aligned_cols=105 Identities=15% Similarity=0.143 Sum_probs=68.4
Q ss_pred cceEEEEcC-CCCcHHHHHHHHHCCC-------cEEEEeCCHH--HHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcc
Q 004892 308 VRKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSE--YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK 377 (724)
Q Consensus 308 ~~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~--~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~ 377 (724)
..||+|||+ |.+|+++|..++..|. +++++|++++ .++....++.+....... . -.+.
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~-~-----------~~i~ 71 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLA-G-----------VVIT 71 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcC-C-----------cEEe
Confidence 359999998 9999999999988765 7999999653 233222222221100000 0 1122
Q ss_pred cccCccCcCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 004892 378 GVLDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTST 425 (724)
Q Consensus 378 ~~~~~~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (724)
+.+++++++||+||.+.- .+..+.+++..++.++.+++++++..|..
T Consensus 72 -~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNP 132 (326)
T PRK05442 72 -DDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNP 132 (326)
T ss_pred -cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 456799999999998762 13456677778888888777777655543
No 263
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.78 E-value=0.00017 Score=71.25 Aligned_cols=138 Identities=20% Similarity=0.206 Sum_probs=93.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004892 27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (724)
Q Consensus 27 al~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa 104 (724)
.+++.+...+.+.|..++..+..+.|.| .+.| +++. ....++ +.|..++.||++.
T Consensus 31 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG------G~v~----------------ag~aI~-d~i~~~~~~V~t~ 87 (197)
T PRK14512 31 EINKDLSELFQEKILLLEALDSKKPIFVYIDSEG------GDID----------------AGFAIF-NMIRFVKPKVFTI 87 (197)
T ss_pred EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC------CCHH----------------HHHHHH-HHHHhCCCCEEEE
Confidence 4778889999999988876333343333 3433 3321 122455 6678899999999
Q ss_pred ECccccchhHHHHhhcCE--EEEeCCceeeCcccccCccCCcchhhh------------------hcccc--cHHHHHHH
Q 004892 105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQR------------------LPRLV--GLSKAIEM 162 (724)
Q Consensus 105 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~~P~~g~~~~------------------l~r~~--G~~~a~~l 162 (724)
+.|.|.+.|.-++++||- |++.++++|..-...-++. |.+.- +...- ......++
T Consensus 88 v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~---G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~ 164 (197)
T PRK14512 88 GVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFK---GVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKD 164 (197)
T ss_pred EEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHh
Confidence 999999999999999985 8999999887655432221 11110 11111 23455666
Q ss_pred HHcCCCCCHHHHHHCCCcceecCc-chHH
Q 004892 163 MLLSKSITSEEGWKLGLIDAVVTS-EELL 190 (724)
Q Consensus 163 ~ltg~~i~a~eA~~~Glv~~vv~~-~~l~ 190 (724)
+-....++|+||+++||||+|++. +++.
T Consensus 165 ~~~d~~lta~EA~~yGliD~I~~~~~~l~ 193 (197)
T PRK14512 165 TDRDFWLDSSSAVKYGLVFEVVETRLELE 193 (197)
T ss_pred hhcCcccCHHHHHHcCCccEeecCcHHhH
Confidence 667789999999999999999954 4443
No 264
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=97.76 E-value=0.00014 Score=77.32 Aligned_cols=101 Identities=17% Similarity=0.141 Sum_probs=72.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeC-CHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEV-NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~-~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (724)
++|||||+|.+|+.+|..+..-|.+|..||+ .+...... .......++ +.++
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~--------------------------~~~~~~~~Ld~lL~ 196 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV--------------------------DGVVGVDSLDELLA 196 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc--------------------------ccceecccHHHHHh
Confidence 6899999999999999999999999999999 44332110 011223344 4579
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC-C--CCHHHHhcccC
Q 004892 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTS 436 (724)
Q Consensus 387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts-~--~~~~~~~~~~~ 436 (724)
.||+|+..+|...+.+.-+=++....++++++++ |++ + +.-..+...+.
T Consensus 197 ~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailI-N~aRG~vVde~aL~~AL~ 248 (324)
T COG0111 197 EADILTLHLPLTPETRGLINAEELAKMKPGAILI-NAARGGVVDEDALLAALD 248 (324)
T ss_pred hCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEE-ECCCcceecHHHHHHHHH
Confidence 9999999999888876655566777889999775 555 3 33334555543
No 265
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.76 E-value=4.8e-05 Score=81.01 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=68.6
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccc
Q 004892 309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG 378 (724)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~ 378 (724)
-||+|||+ |.+|+++|..+...|. +++++|+++ +.++.-..++.+....... + -.+.
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~-~-----------~~i~- 70 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLA-G-----------VVAT- 70 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccC-C-----------cEEe-
Confidence 48999998 9999999999998886 799999965 3233322222221100000 0 0122
Q ss_pred ccCccCcCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004892 379 VLDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTS 424 (724)
Q Consensus 379 ~~~~~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (724)
+.+++++++||+||.+.- .+..+.+++..++.++++++++++..|.
T Consensus 71 ~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN 130 (323)
T TIGR01759 71 TDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGN 130 (323)
T ss_pred cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 456799999999998762 1345677778889998886777765543
No 266
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.75 E-value=0.0001 Score=84.20 Aligned_cols=128 Identities=13% Similarity=0.087 Sum_probs=82.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (724)
++|+|||.|.||..+|..+...|++|+.||++... +... ..+ +... ++ +.++.
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~-~l~ell~~ 194 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAA-----------QLG-------------VELV-SLDELLAR 194 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------CEEE-cHHHHHhh
Confidence 68999999999999999999999999999986432 1100 011 1112 33 56789
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCC--HHHHhcccC-CCCCEEEEecC--CCC-----CCCCeee
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS-SQDRIIGAHFF--SPA-----HVMPLLE 457 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~-~~~r~ig~h~~--~p~-----~~~~lve 457 (724)
||+|+.++|...+.+.-+-++..+.++++++++..+.+-. -..+...+. ..-...++..| .|+ +..+-|.
T Consensus 195 aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi 274 (526)
T PRK13581 195 ADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVV 274 (526)
T ss_pred CCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCee
Confidence 9999999998877665554677788899998874444433 334555543 22233344433 232 3334455
Q ss_pred EecCC
Q 004892 458 IVRTE 462 (724)
Q Consensus 458 ii~~~ 462 (724)
+.|+-
T Consensus 275 lTPHi 279 (526)
T PRK13581 275 VTPHL 279 (526)
T ss_pred EcCcc
Confidence 66643
No 267
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=97.75 E-value=0.00096 Score=71.51 Aligned_cols=138 Identities=16% Similarity=0.099 Sum_probs=89.4
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEE
Q 004892 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (724)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav 105 (724)
.+++++-.+-....++.++.. .+-+|-|.=.++++ .|.+-++. .......+.+ ..+....+|+|++|
T Consensus 200 G~~~peGyRKAlR~mklAekf-~lPIVtLVDTpGA~-pG~~AEe~----------Gqa~aIAr~l-~ams~l~VPiISVV 266 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKF-GFPILTFVDTPGAY-AGIKAEEL----------GQGEAIAFNL-REMFGLRVPIIATV 266 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcC-CCHHHHHH----------hHHHHHHHHH-HHHhcCCCCEEEEE
Confidence 468899999999999888764 45555554333333 33332221 0112233344 45788999999999
Q ss_pred CccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecC
Q 004892 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (724)
Q Consensus 106 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~ 185 (724)
-|.+.+||.....+||+++|.+++.++. +-|.++++..+...--...|.+ .-.++|.++++.|+||+|+|
T Consensus 267 iGeGgSGGAlalg~aD~VlMle~A~ysV------isPEgaAsILwkd~~~A~eAAe----alkitA~dL~~~GiID~II~ 336 (431)
T PLN03230 267 IGEGGSGGALAIGCGNRMLMMENAVYYV------ASPEACAAILWKSAAAAPKAAE----ALRITAAELVKLGVVDEIVP 336 (431)
T ss_pred eCCCCcHHHHHhhcCCEEEEecCCEEEe------cCHHHHHHHHhccccchHHHHH----HcCCCHHHHHhCCCCeEecc
Confidence 9999666654445789999999988763 2244444444443322233333 33899999999999999996
Q ss_pred c
Q 004892 186 S 186 (724)
Q Consensus 186 ~ 186 (724)
.
T Consensus 337 E 337 (431)
T PLN03230 337 E 337 (431)
T ss_pred C
Confidence 3
No 268
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=97.74 E-value=0.00043 Score=68.32 Aligned_cols=136 Identities=18% Similarity=0.186 Sum_probs=96.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004892 27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (724)
Q Consensus 27 al~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa 104 (724)
.+|.++..++...|-.++.++..+-|.+ .+.|+ |+. ....++ +.|...+.||...
T Consensus 38 ~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG------~v~----------------~g~aIy-d~m~~~~~~V~Tv 94 (200)
T CHL00028 38 EVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGG------SVI----------------SGLAIY-DTMQFVKPDVHTI 94 (200)
T ss_pred eecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCc------chh----------------hHHHHH-HHHHhcCCCEEEE
Confidence 5899999999999999886544343333 44443 221 122455 6688899999999
Q ss_pred ECccccchhHHHHhhcC--EEEEeCCceeeCcccccCccCCcch-hh-----------------hhcccc--cHHHHHHH
Q 004892 105 VEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGG-TQ-----------------RLPRLV--GLSKAIEM 162 (724)
Q Consensus 105 v~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G~~P~~g~-~~-----------------~l~r~~--G~~~a~~l 162 (724)
+-|.|.+.|.-|++++| .|++.++++|.+-....|.. .|- +. .+...- ......++
T Consensus 95 ~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~--~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~ 172 (200)
T CHL00028 95 CLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFY--EGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISED 172 (200)
T ss_pred EEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 99999999999999999 69999999998877655521 121 11 111111 23455566
Q ss_pred HHcCCCCCHHHHHHCCCcceecCcc
Q 004892 163 MLLSKSITSEEGWKLGLIDAVVTSE 187 (724)
Q Consensus 163 ~ltg~~i~a~eA~~~Glv~~vv~~~ 187 (724)
+-....++|+||+++||||+|+.+.
T Consensus 173 ~~r~~~lta~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 173 MERDVFMSATEAKAYGIVDLVAVNN 197 (200)
T ss_pred hhcCccCCHHHHHHcCCCcEEeecC
Confidence 6777889999999999999998543
No 269
>PLN02928 oxidoreductase family protein
Probab=97.74 E-value=0.00016 Score=78.16 Aligned_cols=115 Identities=11% Similarity=0.059 Sum_probs=73.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (724)
++|+|||.|.||..+|..+...|.+|+.||++........ .. ..... ............++ +.++.
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~--~~------~~~~~-----~~~~~~~~~~~~~L~ell~~ 226 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDG--LL------IPNGD-----VDDLVDEKGGHEDIYEFAGE 226 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhh--hc------ccccc-----ccccccccCcccCHHHHHhh
Confidence 6899999999999999999999999999999743211100 00 00000 00000000012234 56789
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCC--HHHHhcccC
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS 436 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~ 436 (724)
||+|+.++|-+.+...-+=++....++++++|+...-+-. -..+.+.+.
T Consensus 227 aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~ 277 (347)
T PLN02928 227 ADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALE 277 (347)
T ss_pred CCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 9999999998877655555677788899998875444433 344555554
No 270
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=97.74 E-value=7.7e-05 Score=82.10 Aligned_cols=102 Identities=16% Similarity=0.151 Sum_probs=72.8
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHC-------CC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcc-
Q 004892 309 RKVAVIGG-GLMGSGIATAHILN-------NI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK- 377 (724)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~la~~-------G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~- 377 (724)
-||+|||+ |.+|..+|..++.. |+ +++++|++++.++.-.-++++....+ +..+.
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~--------------~~~v~i 166 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPL--------------LREVSI 166 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhh--------------cCceEE
Confidence 58999999 99999999999988 66 89999999998776554444332111 12233
Q ss_pred cccCccCcCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004892 378 GVLDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTS 424 (724)
Q Consensus 378 ~~~~~~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (724)
.+.++++++|||+||.+.- .|..+.+++.++|.++..++++|+..+.
T Consensus 167 ~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsN 227 (444)
T PLN00112 167 GIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGN 227 (444)
T ss_pred ecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCC
Confidence 2467799999999998762 1344666777778886566776665443
No 271
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=97.74 E-value=0.0017 Score=70.73 Aligned_cols=185 Identities=12% Similarity=0.092 Sum_probs=107.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEE------eCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLK------EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~------d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (724)
++|+|||.|.+|...|..+...|++|++- |.+.+.-+++. +.| +...+..
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~-----------~dG-------------F~v~~~~ 92 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKAT-----------ENG-------------FKVGTYE 92 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHH-----------hcC-------------CccCCHH
Confidence 68999999999999999999999999843 33333333221 112 1222223
Q ss_pred cCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCC----------CC
Q 004892 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA----------HV 452 (724)
Q Consensus 383 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~----------~~ 452 (724)
++++.||+|+..+|+. ....+++++.+.+++++++.- +-+..+.......+..-.++-+-|-.|- .-
T Consensus 93 Ea~~~ADvVviLlPDt--~q~~v~~~i~p~LK~Ga~L~f-sHGFni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~G 169 (487)
T PRK05225 93 ELIPQADLVINLTPDK--QHSDVVRAVQPLMKQGAALGY-SHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFG 169 (487)
T ss_pred HHHHhCCEEEEcCChH--HHHHHHHHHHhhCCCCCEEEe-cCCceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCCC
Confidence 6789999999999966 377888999999999998853 2233332221111111223333332221 11
Q ss_pred CCeeeEecC-CCCCHHHHHHHHHHHHHcCCee--EE-E--c-C-CCchhhhh-hhhHHH-----HHHHHHHHcCCCHHHH
Q 004892 453 MPLLEIVRT-ERTSAQVILDLMTVGKIIKKVP--VV-V--G-N-CTGFAVNR-AFFPYS-----QSARLLVSLGVDVFRI 518 (724)
Q Consensus 453 ~~lveii~~-~~t~~e~~~~~~~l~~~lGk~~--v~-v--~-d-~pG~i~nR-l~~~~~-----~Ea~~l~~~Gv~~~~I 518 (724)
.|.+-.|-. ...+..+.+.+..+...+|..- |. . . + ..-....| ++...+ ...-.++++|++|+.-
T Consensus 170 vp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A 249 (487)
T PRK05225 170 VPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYA 249 (487)
T ss_pred ceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHHHHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHH
Confidence 122222321 3446678999999999999762 22 1 1 1 11222233 222222 2334677889988776
Q ss_pred HH
Q 004892 519 DS 520 (724)
Q Consensus 519 D~ 520 (724)
-.
T Consensus 250 ~k 251 (487)
T PRK05225 250 EK 251 (487)
T ss_pred HH
Confidence 54
No 272
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.73 E-value=0.00022 Score=75.90 Aligned_cols=160 Identities=23% Similarity=0.324 Sum_probs=102.4
Q ss_pred cEEEEEeCCC-C--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHH
Q 004892 14 GVAIITLINP-P--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (724)
Q Consensus 14 ~v~~i~l~~p-~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (724)
.|+.|.++.+ . .+.+..-..+.+.+.++.+..|++++.|||.=. |-|+.... .....+.+
T Consensus 60 ~Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~in----SPGG~v~a-------------s~~i~~~l 122 (317)
T COG0616 60 VIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRIN----SPGGSVVA-------------SELIARAL 122 (317)
T ss_pred EEEEEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEE----CcCCchhH-------------HHHHHHHH
Confidence 5788877655 1 122223346778888999999999999999511 11222110 01122333
Q ss_pred HHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhccccc---------------
Q 004892 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG--------------- 155 (724)
Q Consensus 91 ~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G--------------- 155 (724)
+++..-. ||++.|++.|.-||.-++++||.++|+++|..|--.+-.+. |.... +-...|
T Consensus 123 -~~l~~~~-PV~v~v~~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~~-~~~~~---l~~k~Gv~~~~~~ag~~k~~~ 196 (317)
T COG0616 123 -KRLRAKK-PVVVSVGGYAASGGYYIALAADKIVADPSSITGSIGVISGA-PNFEE---LLEKLGVEKEVITAGEYKDIL 196 (317)
T ss_pred -HHHhhcC-CEEEEECCeecchhhhhhccCCEEEecCCceeeeceeEEec-CCHHH---HHHhcCCceeeeecccccccc
Confidence 3344444 99999999999999999999999999999988765554442 21110 111111
Q ss_pred -----------------------------------HHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHH
Q 004892 156 -----------------------------------LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLW 196 (724)
Q Consensus 156 -----------------------------------~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~ 196 (724)
......-+.+|+.+++++|++.||||++-..++....+.+.
T Consensus 197 ~~~~~~t~e~~~~~q~~~~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~~~~ 272 (317)
T COG0616 197 SPFRPLTEEEREILQKEIDETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAEL 272 (317)
T ss_pred CcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHHHHHHHHh
Confidence 11123346689999999999999999998766555544443
No 273
>PRK11778 putative inner membrane peptidase; Provisional
Probab=97.72 E-value=0.00028 Score=74.51 Aligned_cols=160 Identities=17% Similarity=0.234 Sum_probs=97.0
Q ss_pred cCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHH
Q 004892 12 NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (724)
Q Consensus 12 ~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (724)
.+.|++|.++.+ ..+. ...+.+++.+.+..+..+ ..|||.-.. .|+...... .....+
T Consensus 89 ~~~v~VI~~~G~I~~~~-~~~l~e~i~a~l~~A~~~---~aVvLridS----pGG~v~~s~-------------~a~~~l 147 (330)
T PRK11778 89 KPRLFVLDFKGDIDASE-VESLREEITAILAVAKPG---DEVLLRLES----PGGVVHGYG-------------LAASQL 147 (330)
T ss_pred CCeEEEEEEEEEECCCc-chhhHHHHHHHHHhccCC---CeEEEEEeC----CCCchhHHH-------------HHHHHH
Confidence 357999999876 2221 123456666666555433 467775321 122221100 011113
Q ss_pred HHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchh---------------------h-
Q 004892 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGT---------------------Q- 148 (724)
Q Consensus 91 ~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~---------------------~- 148 (724)
.++....||+++.+++.|.-||.-++++||.++|.+.+.+|.-.+-.. .|..... .
T Consensus 148 -~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~-~~~~~~lLeKlGI~~evi~aG~yK~a~~pf 225 (330)
T PRK11778 148 -QRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQ-IPNFHRLLKKHDIDVELHTAGEYKRTLTLF 225 (330)
T ss_pred -HHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeee-ccCHHHHHHHCCCceEEEEecCccCCCCCC
Confidence 346778899999999999999999999999999999888775554322 1111110 0
Q ss_pred ---------hhcccc-------------cH-HHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHH
Q 004892 149 ---------RLPRLV-------------GL-SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSR 194 (724)
Q Consensus 149 ---------~l~r~~-------------G~-~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~ 194 (724)
.+...+ ++ ....+-+.+|+.+++++|++.||||++-..+++...+.
T Consensus 226 ~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~~ 294 (330)
T PRK11778 226 GENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELM 294 (330)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHHH
Confidence 000000 00 01123356899999999999999999998777655433
No 274
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=97.72 E-value=4.2e-05 Score=74.95 Aligned_cols=140 Identities=19% Similarity=0.274 Sum_probs=93.3
Q ss_pred EEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCce--EEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004892 18 ITLINPPVNALAIPIVAGLKDKFEEATSRDDVK--AIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (724)
Q Consensus 18 i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~--~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (724)
|.|+.| ++.++...+.+.|..+++++..+ .|.|.+. |+|+.. ...++ +.|.
T Consensus 19 i~l~g~----I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSp------GG~v~~----------------g~~i~-~~i~ 71 (182)
T PF00574_consen 19 IFLNGP----IDEESANRLISQLLYLENEDKNKPINIYINSP------GGDVDA----------------GLAIY-DAIR 71 (182)
T ss_dssp EEEESS----BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEEC------EBCHHH----------------HHHHH-HHHH
T ss_pred EEECCc----cCHHHHHHHHHHHHHHhccCCCceEEEEEcCC------CCccHH----------------HHHHH-HHHH
Confidence 445454 88999999999888775333222 2233443 333321 22455 6688
Q ss_pred cCCCcEEEEECccccchhHHHHhhcCE--EEEeCCceeeCcccccCccCCcchhh----------------hhccc--cc
Q 004892 96 DCKKPIVAAVEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQ----------------RLPRL--VG 155 (724)
Q Consensus 96 ~~~kp~Iaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~~P~~g~~~----------------~l~r~--~G 155 (724)
.++.|+++.+.|.|.+.|.-++++||. |++.+++.|.+-+...+... ..... .+... ..
T Consensus 72 ~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g-~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~ 150 (182)
T PF00574_consen 72 SSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGG-NASELREQAKELEKLNERIANIYAERTGLS 150 (182)
T ss_dssp HSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEE-EHHHHHHHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred hcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeeccc-ccchhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 899999999999999999999999999 89999999999888655422 11110 01111 12
Q ss_pred HHHHHHHHHcCCCCCHHHHHHCCCcceecC
Q 004892 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (724)
Q Consensus 156 ~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~ 185 (724)
.....+++-....++|+||+++|+||+|+.
T Consensus 151 ~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~ 180 (182)
T PF00574_consen 151 KEEIEELMDRDTWLSAEEALEYGIIDEIIE 180 (182)
T ss_dssp HHHHHHHCSSTEEEEHHHHHHHTSSSEEES
T ss_pred HHHHHHHHhCCccccHHHHHHcCCCCEecc
Confidence 344455555667789999999999999974
No 275
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=97.71 E-value=0.00086 Score=70.19 Aligned_cols=137 Identities=13% Similarity=0.084 Sum_probs=90.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEE
Q 004892 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (724)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav 105 (724)
-.++++-.+.....++.++.. .+-+|-|--.+++++ |.+-.+- -......+.+ ..+....+|+|++|
T Consensus 133 G~~~p~g~rKa~Rlm~lA~~f-~lPIItlvDTpGA~~-G~~AE~~----------G~~~aiar~l-~~~a~~~VP~IsVV 199 (322)
T CHL00198 133 GMPSPGGYRKALRLMKHANKF-GLPILTFIDTPGAWA-GVKAEKL----------GQGEAIAVNL-REMFSFEVPIICTI 199 (322)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcCc-CHHHHHH----------hHHHHHHHHH-HHHHcCCCCEEEEE
Confidence 467888999999988888764 455555543333443 4322110 0112222333 44678999999999
Q ss_pred CccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecC
Q 004892 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (724)
Q Consensus 106 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~ 185 (724)
-|.|.|||.-....||+++|.+++.|+. +.|.++++..+.. ..+|.+ +-..-+++|++.++.|+||.|+|
T Consensus 200 iGeggsGGAlal~~aD~V~m~e~a~~sV------isPEg~a~Il~~d---~~~a~~-aA~~~~ita~dL~~~giiD~ii~ 269 (322)
T CHL00198 200 IGEGGSGGALGIGIGDSIMMLEYAVYTV------ATPEACAAILWKD---SKKSLD-AAEALKITSEDLKVLGIIDEIIP 269 (322)
T ss_pred eCcccHHHHHhhhcCCeEEEeCCeEEEe------cCHHHHHHHHhcc---hhhHHH-HHHHcCCCHHHHHhCCCCeEecc
Confidence 9999888865444699999999998874 2344444444333 233333 24456899999999999999996
No 276
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.69 E-value=0.00021 Score=71.34 Aligned_cols=150 Identities=15% Similarity=0.114 Sum_probs=113.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC----cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc
Q 004892 310 KVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (724)
Q Consensus 310 kI~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 385 (724)
+|++||+|.|..+++..+.+.|. +++.+-.+......- .... +.-.+.++.+.+
T Consensus 2 ~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~----------~~~~------------g~~~~~~n~~~~ 59 (267)
T KOG3124|consen 2 KVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLM----------FEAL------------GVKTVFTNLEVL 59 (267)
T ss_pred ceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhh----------hhcC------------CceeeechHHHH
Confidence 79999999999999999999986 344443322111110 1111 222233445677
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEe-cCCCC
Q 004892 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTERT 464 (724)
Q Consensus 386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii-~~~~t 464 (724)
+.+|+++.++- +.+...++.++...+..+.||+|..-+..++.+...+..+.|++...+..|..+.....+. .+...
T Consensus 60 ~~s~v~~~svK--p~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~~ 137 (267)
T KOG3124|consen 60 QASDVVFLSVK--PQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCHA 137 (267)
T ss_pred hhccceeEeec--chhHHHHhhcCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCCc
Confidence 89999999995 7888888888877667778999999999999999988877899999999999888777744 57777
Q ss_pred CHHHHHHHHHHHHHcCCee
Q 004892 465 SAQVILDLMTVGKIIKKVP 483 (724)
Q Consensus 465 ~~e~~~~~~~l~~~lGk~~ 483 (724)
..+..+.+.+++...|+..
T Consensus 138 ~~~D~~l~~~ll~~vG~~~ 156 (267)
T KOG3124|consen 138 TNEDLELVEELLSAVGLCE 156 (267)
T ss_pred chhhHHHHHHHHHhcCcce
Confidence 8888899999999999643
No 277
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.66 E-value=7.3e-05 Score=77.89 Aligned_cols=71 Identities=17% Similarity=0.222 Sum_probs=55.3
Q ss_pred ceEEEEcCC-CCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004892 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (724)
++|+|||.| .||.+||..|.++|+.|++|++....++ +.+++
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~-------------------------------------e~~~~ 202 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAK-------------------------------------ALCRQ 202 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHH-------------------------------------HHHhc
Confidence 689999996 9999999999999999999987643211 24578
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecC
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (724)
||+||.|++....+...+ +++++++++.+
T Consensus 203 ADIVIsavg~~~~v~~~~-------ik~GaiVIDvg 231 (301)
T PRK14194 203 ADIVVAAVGRPRLIDADW-------LKPGAVVIDVG 231 (301)
T ss_pred CCEEEEecCChhcccHhh-------ccCCcEEEEec
Confidence 999999998654443332 78899887644
No 278
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=97.65 E-value=0.00066 Score=69.12 Aligned_cols=201 Identities=18% Similarity=0.214 Sum_probs=117.8
Q ss_pred cceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhh-cCcccccCc-c
Q 004892 308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNAL-KMLKGVLDY-S 383 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~-~~i~~~~~~-~ 383 (724)
|.||+-||+|..|++....++.. ..+|+++|.+..++.+-...--.. .+.| + .+-+.+.. .++-+++|. .
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpi----yepg-l-devv~~crgknlffstdiek 74 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPI----YEPG-L-DEVVKQCRGKNLFFSTDIEK 74 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcc----cCCC-H-HHHHHHhcCCceeeecchHH
Confidence 46999999999999988777654 458999999998876533210000 0111 0 11111111 356678887 5
Q ss_pred CcCCCCEEEEcccC-------------ChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH---HHhcccCCCCCEEEEec-
Q 004892 384 EFKDVDMVIEAVIE-------------SVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHF- 446 (724)
Q Consensus 384 ~~~~aDlVIeav~e-------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~~~r~ig~h~- 446 (724)
+++.+|+|+.+|.. |+.......+.|.+....+.|++ --|+.|+. .+...+.+... |+||
T Consensus 75 ai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivv-ekstvpv~aaesi~~il~~n~~--~i~fq 151 (481)
T KOG2666|consen 75 AIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVV-EKSTVPVKAAESIEKILNHNSK--GIKFQ 151 (481)
T ss_pred HhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEE-eeccccchHHHHHHHHHhcCCC--CceeE
Confidence 78999999999832 56666777777888877777765 45666654 23233332222 4444
Q ss_pred -----------------CCCCCCCCeeeEecCCCCCH--HHHHHHHHHHHHcCC-e-eEEEc----CCCchhhhhhhhH-
Q 004892 447 -----------------FSPAHVMPLLEIVRTERTSA--QVILDLMTVGKIIKK-V-PVVVG----NCTGFAVNRAFFP- 500 (724)
Q Consensus 447 -----------------~~p~~~~~lveii~~~~t~~--e~~~~~~~l~~~lGk-~-~v~v~----d~pG~i~nRl~~~- 500 (724)
+||-+ .++.|..|.+ .+++.+..+++.+-. . ++..+ +..-+.+|.++..
T Consensus 152 ilsnpeflaegtaikdl~npdr-----vligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqr 226 (481)
T KOG2666|consen 152 ILSNPEFLAEGTAIKDLFNPDR-----VLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQR 226 (481)
T ss_pred eccChHHhcccchhhhhcCCce-----EEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHH
Confidence 34433 3777777643 456666677766542 2 22222 2233344444322
Q ss_pred --HHHHHHHHHHc-CCCHHHHHHHH
Q 004892 501 --YSQSARLLVSL-GVDVFRIDSAI 522 (724)
Q Consensus 501 --~~~Ea~~l~~~-Gv~~~~ID~a~ 522 (724)
-+|....+.|. |.+++++..++
T Consensus 227 issins~salceatgadv~eva~av 251 (481)
T KOG2666|consen 227 ISSINSMSALCEATGADVSEVAYAV 251 (481)
T ss_pred HhhhHHHHHHHHhcCCCHHHHHHHh
Confidence 22333333333 88999988876
No 279
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=97.64 E-value=0.0001 Score=78.07 Aligned_cols=116 Identities=17% Similarity=0.280 Sum_probs=72.5
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccc-c-cC--c
Q 004892 310 KVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-V-LD--Y 382 (724)
Q Consensus 310 kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~-~~--~ 382 (724)
||+|||+ |.+|+++|..++..|+ +++++|+++ ....+. ++. ... ....+.. + ++ +
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a~-DL~--------~~~--------~~~~i~~~~~~~~~~ 62 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVAA-DLS--------HIP--------TAASVKGFSGEEGLE 62 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEEc-hhh--------cCC--------cCceEEEecCCCchH
Confidence 7999999 9999999999998886 899999987 211111 011 110 0013443 2 23 6
Q ss_pred cCcCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCcEEEecCCCCC-----HHHHh-cccC-CCCCE
Q 004892 383 SEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTID-----LNIVG-EKTS-SQDRI 441 (724)
Q Consensus 383 ~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~-----~~~~~-~~~~-~~~r~ 441 (724)
+++++||+||.+.- .+..+.+++.+++.++. |+++++..|.... ++... .... .++|+
T Consensus 63 ~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rV 141 (312)
T TIGR01772 63 NALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKL 141 (312)
T ss_pred HHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEecCchhhHHHHHHHHHHHhcCCChHHE
Confidence 89999999998762 35567777778888885 5565554444432 33322 2232 34567
Q ss_pred EEE
Q 004892 442 IGA 444 (724)
Q Consensus 442 ig~ 444 (724)
+|+
T Consensus 142 iG~ 144 (312)
T TIGR01772 142 FGV 144 (312)
T ss_pred Eee
Confidence 775
No 280
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=97.62 E-value=0.00015 Score=78.71 Aligned_cols=102 Identities=18% Similarity=0.200 Sum_probs=70.0
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC-------cEEEE--eCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcc-
Q 004892 309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLK--EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK- 377 (724)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~--d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~- 377 (724)
-||+|||+ |.+|.++|..++..|. .++++ |++++.++.-.-++.+.... .+..+.
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~--------------~~~~v~i 110 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYP--------------LLREVSI 110 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhh--------------hcCceEE
Confidence 48999999 9999999999998875 24445 88888876554444332211 112233
Q ss_pred cccCccCcCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004892 378 GVLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS 424 (724)
Q Consensus 378 ~~~~~~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (724)
.+.++++++|||+||.+.-- +..+.+++...|.++.+++++++..+.
T Consensus 111 ~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsN 171 (387)
T TIGR01757 111 GIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGN 171 (387)
T ss_pred ecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 24567999999999987621 344666777788888878887765443
No 281
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=97.61 E-value=0.00064 Score=66.86 Aligned_cols=136 Identities=18% Similarity=0.153 Sum_probs=91.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004892 27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (724)
Q Consensus 27 al~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa 104 (724)
.++..+...+...|..++.++..+-|+| .+. |+|+. ....++ +.|..++.|+...
T Consensus 34 ~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSp------GG~v~----------------~g~~I~-d~l~~~~~~v~t~ 90 (191)
T TIGR00493 34 EVNDSVANLIVAQLLFLEAEDPEKDIYLYINSP------GGSIT----------------AGLAIY-DTMQFIKPDVSTI 90 (191)
T ss_pred EEChHHHHHHHHHHHHhhccCCCCCEEEEEECC------CCCHH----------------HHHHHH-HHHHhcCCCEEEE
Confidence 3677888888888888887654444444 333 33321 122445 5577777888888
Q ss_pred ECccccchhHHHHhhcC--EEEEeCCceeeCcccccCccCCcchh---------------hhhcccc--cHHHHHHHHHc
Q 004892 105 VEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGT---------------QRLPRLV--GLSKAIEMMLL 165 (724)
Q Consensus 105 v~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G~~P~~g~~---------------~~l~r~~--G~~~a~~l~lt 165 (724)
+-|.|.+.|.-+++++| .|++.++|+|.+-+..-|......-. ..+.+.- ......+++-.
T Consensus 91 ~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~ 170 (191)
T TIGR00493 91 CIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTER 170 (191)
T ss_pred EEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhC
Confidence 89999999998888765 69999999998876643321111100 0012222 33566677778
Q ss_pred CCCCCHHHHHHCCCcceecC
Q 004892 166 SKSITSEEGWKLGLIDAVVT 185 (724)
Q Consensus 166 g~~i~a~eA~~~Glv~~vv~ 185 (724)
+..++|+||+++||||+|+.
T Consensus 171 ~~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 171 DFFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred CccCcHHHHHHcCCccEEec
Confidence 89999999999999999974
No 282
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.59 E-value=0.00011 Score=77.04 Aligned_cols=89 Identities=20% Similarity=0.240 Sum_probs=60.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (724)
++|+|||+|.||..+|..|...|.+|++++|+++..+.+. +.+.. .+. ..++ +.+++
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~-----------~~g~~----------~~~-~~~l~~~l~~ 209 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARIT-----------EMGLI----------PFP-LNKLEEKVAE 209 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HCCCe----------eec-HHHHHHHhcc
Confidence 6899999999999999999999999999999987654421 11100 001 1122 45689
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (724)
+|+||.++|...- -++..+.++++++|++..|
T Consensus 210 aDiVint~P~~ii-----~~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 210 IDIVINTIPALVL-----TADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred CCEEEECCChHHh-----CHHHHhcCCCCeEEEEeCc
Confidence 9999999984311 1234455677777765444
No 283
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.57 E-value=0.0026 Score=66.62 Aligned_cols=137 Identities=15% Similarity=0.091 Sum_probs=88.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEE
Q 004892 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (724)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav 105 (724)
-+++++-.+-....++.++.- .+-+|-|.-.+++++ |.+-++.. ......+.+ ..+....+|+|++|
T Consensus 130 G~~~p~g~rKa~R~m~lA~~f-~iPvVtlvDTpGa~~-g~~aE~~G----------~~~aia~~l-~a~s~~~VP~IsVV 196 (316)
T TIGR00513 130 GMPAPEGYRKALRLMKMAERF-KMPIITFIDTPGAYP-GIGAEERG----------QSEAIARNL-REMARLGVPVICTV 196 (316)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCCCC-CHHHHHHH----------HHHHHHHHH-HHHHcCCCCEEEEE
Confidence 467888888888888888754 455666543333333 33322111 112233344 45778899999999
Q ss_pred CccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecC
Q 004892 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (724)
Q Consensus 106 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~ 185 (724)
-|.|.|||......||++++.+++.++. +.|.++.+..+... .++.+..- -..+++.++.+.|+||.|+|
T Consensus 197 iGeggsGGAla~~~aD~v~m~~~a~~sV------isPEg~a~Il~kd~---~~a~~aae-~~~~ta~~l~~~G~iD~II~ 266 (316)
T TIGR00513 197 IGEGGSGGALAIGVGDKVNMLEYSTYSV------ISPEGCAAILWKDA---SKAPKAAE-AMKITAPDLKELGLIDSIIP 266 (316)
T ss_pred ecccccHHHhhhccCCEEEEecCceEEe------cCHHHHHHHhccch---hhHHHHHH-HccCCHHHHHHCCCCeEecc
Confidence 9999777775445699999999988763 22443433333321 22222222 36778999999999999996
No 284
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.57 E-value=0.00014 Score=76.86 Aligned_cols=97 Identities=19% Similarity=0.264 Sum_probs=63.9
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccc-c-C--c
Q 004892 310 KVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-L-D--Y 382 (724)
Q Consensus 310 kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~-~--~ 382 (724)
||+|||+ |.+|+++|..++..|. +++++|++ .++...-++.+ .. ....+..+ . + +
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~--------~~--------~~~~i~~~~~~~~~y 63 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSH--------IN--------TPAKVTGYLGPEELK 63 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHh--------CC--------CcceEEEecCCCchH
Confidence 8999999 9999999999998885 89999998 22211111111 10 00134432 3 2 6
Q ss_pred cCcCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 004892 383 SEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTST 425 (724)
Q Consensus 383 ~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (724)
+++++||+||.+.- .|.++.+++.+.+.++. |+++++..|..
T Consensus 64 ~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~-p~a~vivvtNP 119 (310)
T cd01337 64 KALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKAC-PKALILIISNP 119 (310)
T ss_pred HhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCc
Confidence 99999999998762 24556677777888885 46666544433
No 285
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.53 E-value=0.00023 Score=67.16 Aligned_cols=98 Identities=23% Similarity=0.303 Sum_probs=60.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (724)
+++.|+|.|..|+++|+.|...|.+|+++|++|-.+-++. ..| ....+-.++++.+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~-----------~dG-------------f~v~~~~~a~~~a 79 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAA-----------MDG-------------FEVMTLEEALRDA 79 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHH-----------HTT--------------EEE-HHHHTTT-
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhh-----------hcC-------------cEecCHHHHHhhC
Confidence 6799999999999999999999999999999997654432 112 2222222678899
Q ss_pred CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC---CCHHHHhcc
Q 004892 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEK 434 (724)
Q Consensus 389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~---~~~~~~~~~ 434 (724)
|++|.+.....-+..+-| +.+++++|+++.++. +.+..+...
T Consensus 80 di~vtaTG~~~vi~~e~~----~~mkdgail~n~Gh~d~Eid~~~L~~~ 124 (162)
T PF00670_consen 80 DIFVTATGNKDVITGEHF----RQMKDGAILANAGHFDVEIDVDALEAN 124 (162)
T ss_dssp SEEEE-SSSSSSB-HHHH----HHS-TTEEEEESSSSTTSBTHHHHHTC
T ss_pred CEEEECCCCccccCHHHH----HHhcCCeEEeccCcCceeEeecccccc
Confidence 999998764433333444 447889998765543 344444443
No 286
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=97.53 E-value=8e-05 Score=78.70 Aligned_cols=95 Identities=27% Similarity=0.329 Sum_probs=64.5
Q ss_pred EEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCCE
Q 004892 313 VIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM 390 (724)
Q Consensus 313 VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl 390 (724)
|||+|.+|..+|..++..+. +++++|++++.++....++.+........ ..+. +.+++++++||+
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~------------~~i~-~~~~~~~~daDi 67 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTP------------KKIR-SGDYSDCKDADL 67 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCC------------eEEe-cCCHHHHCCCCE
Confidence 69999999999999998887 79999999887665444443322100000 1222 456799999999
Q ss_pred EEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEEe
Q 004892 391 VIEAVIE--------------SVPLKQKIFSELEKACPPHCILAT 421 (724)
Q Consensus 391 VIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~s 421 (724)
||.+.-. +..+.+++..++.++. ++++++.
T Consensus 68 vVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~viv 111 (299)
T TIGR01771 68 VVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFLV 111 (299)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEE
Confidence 9987732 3445667777788875 4555543
No 287
>PLN00106 malate dehydrogenase
Probab=97.52 E-value=0.00011 Score=78.29 Aligned_cols=117 Identities=16% Similarity=0.297 Sum_probs=71.6
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccc-ccC---
Q 004892 309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLD--- 381 (724)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~--- 381 (724)
.||+|||+ |.+|+.+|..++..+. +++++|+++ .+.-.-++.+. . . ...+.. +.+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~Dl~~~-------~--------~-~~~i~~~~~~~d~ 80 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAADVSHI-------N--------T-PAQVRGFLGDDQL 80 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEchhhhC-------C--------c-CceEEEEeCCCCH
Confidence 59999999 9999999999998776 899999987 11100011100 0 0 012221 223
Q ss_pred ccCcCCCCEEEEcc--------------cCChHHHHHHHHHHHhhCCCCcEEEecCCCCC-----HH-HHhcccC-CCCC
Q 004892 382 YSEFKDVDMVIEAV--------------IESVPLKQKIFSELEKACPPHCILATNTSTID-----LN-IVGEKTS-SQDR 440 (724)
Q Consensus 382 ~~~~~~aDlVIeav--------------~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~-----~~-~~~~~~~-~~~r 440 (724)
++++++||+||.+. +.+..+.+++.+.+.++.+ +.+++..|.... ++ .+..... .|.+
T Consensus 81 ~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p-~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~ 159 (323)
T PLN00106 81 GDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCP-NALVNIISNPVNSTVPIAAEVLKKAGVYDPKK 159 (323)
T ss_pred HHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCCccccHHHHHHHHHHcCCCCcce
Confidence 47899999999876 2355577777888888874 555543333332 33 2223332 4566
Q ss_pred EEEE
Q 004892 441 IIGA 444 (724)
Q Consensus 441 ~ig~ 444 (724)
++|+
T Consensus 160 viG~ 163 (323)
T PLN00106 160 LFGV 163 (323)
T ss_pred EEEE
Confidence 7765
No 288
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.52 E-value=7.5e-05 Score=79.66 Aligned_cols=100 Identities=16% Similarity=0.104 Sum_probs=66.8
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHhhHhcCCCCHHHHHHhhc--Cc
Q 004892 309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKANNALK--ML 376 (724)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~--~i 376 (724)
.||+|||+ |.+|.++|..++..|. +++++|++++. ++...-++.+... .... .+
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~--------------~~~~~~~i 68 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAF--------------PLLAEIVI 68 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccc--------------cccCceEE
Confidence 48999999 9999999999998887 79999996432 3321111111100 0001 13
Q ss_pred ccccCccCcCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEEecC
Q 004892 377 KGVLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT 423 (724)
Q Consensus 377 ~~~~~~~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (724)
. +.+++++++||+||.+.-- +..+.+++..++.++.+++++++..|
T Consensus 69 ~-~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (322)
T cd01338 69 T-DDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG 128 (322)
T ss_pred e-cCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 2 4567999999999987621 34566777788888886566665544
No 289
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=97.51 E-value=0.00047 Score=73.36 Aligned_cols=109 Identities=15% Similarity=0.080 Sum_probs=75.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (724)
++|+|||.|.+|..+|..+..-|.+|..||+.....+ .+ +. ..++ +.++.
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~---------------~~-------------~~-~~~l~ell~~ 196 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKN---------------EE-------------YE-RVSLEELLKT 196 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccc---------------cC-------------ce-eecHHHHhhc
Confidence 6899999999999999999989999999998642100 00 11 1233 55789
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHhcccCC-CCCEEEEecC
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFF 447 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~~-~~r~ig~h~~ 447 (724)
||+|+.++|-+.+.+.-+=++....++++++|+..+-+ +.-..+.+.+.. +-. .++-.|
T Consensus 197 sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~ 258 (311)
T PRK08410 197 SDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVL 258 (311)
T ss_pred CCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecC
Confidence 99999999988876655556777888999988744333 333455555542 223 455544
No 290
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.51 E-value=0.00041 Score=76.58 Aligned_cols=100 Identities=17% Similarity=0.221 Sum_probs=71.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (724)
++|||||.|.+|..+|..+...|.+|+.||+++.... .......++ +.++.
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~----------------------------~~~~~~~~l~ell~~ 203 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLPL----------------------------GNARQVGSLEELLAQ 203 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCccccc----------------------------CCceecCCHHHHHhh
Confidence 6899999999999999999999999999998642100 001112244 55789
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHhcccC
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS 436 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~ 436 (724)
||+|+.++|-+.+.+.-+=++....++++++|+..+-+ +.-..+...+.
T Consensus 204 sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~ 254 (409)
T PRK11790 204 SDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALK 254 (409)
T ss_pred CCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHH
Confidence 99999999988776655556677788999988643333 33344555554
No 291
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=97.49 E-value=0.0044 Score=65.03 Aligned_cols=137 Identities=18% Similarity=0.126 Sum_probs=90.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEE
Q 004892 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (724)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav 105 (724)
-+++++-.+.....++.++.- .+-+|-|.=.+++++ |.+-.+ .-......+.+ ..+....+|+|++|
T Consensus 130 G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDTpGa~~-G~~aE~----------~G~~~aia~~l-~~~a~~~VP~IsVI 196 (319)
T PRK05724 130 GMPRPEGYRKALRLMKMAEKF-GLPIITFIDTPGAYP-GIGAEE----------RGQSEAIARNL-REMARLKVPIICTV 196 (319)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCCC-CHHHHh----------ccHHHHHHHHH-HHHhCCCCCEEEEE
Confidence 467888888888888888754 466666654444443 433221 01122333444 55788999999999
Q ss_pred CccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecC
Q 004892 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (724)
Q Consensus 106 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~ 185 (724)
-|.|.|||.-....||+++|.+++.|+ .++.-|.+..|-+- ..++.+..- -..+++.++.+.|+||+|+|
T Consensus 197 iGeg~sGGAla~~~aD~v~m~~~A~~s-------visPEg~a~Il~~~--~~~a~~aae-~~~ita~~l~~~g~iD~II~ 266 (319)
T PRK05724 197 IGEGGSGGALAIGVGDRVLMLEYSTYS-------VISPEGCASILWKD--ASKAPEAAE-AMKITAQDLKELGIIDEIIP 266 (319)
T ss_pred eCCccHHHHHHHhccCeeeeecCceEe-------ecCHHHHHHHHhcC--chhHHHHHH-HcCCCHHHHHHCCCceEecc
Confidence 999987777555569999999998876 33333333333332 233433333 56689999999999999996
No 292
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.49 E-value=7.2e-05 Score=79.84 Aligned_cols=100 Identities=17% Similarity=0.151 Sum_probs=65.2
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccc-
Q 004892 310 KVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG- 378 (724)
Q Consensus 310 kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~- 378 (724)
||+|||+ |.+|+.+|..++..|. +++++|+++ +.++....++.+... ........
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~--------------~~~~~~~i~ 67 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAF--------------PLLKGVVIT 67 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcc--------------cccCCcEEe
Confidence 7999999 9999999999998664 599999987 533221111111100 00011111
Q ss_pred ccCccCcCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCcEEEecC
Q 004892 379 VLDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNT 423 (724)
Q Consensus 379 ~~~~~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (724)
..+++++++||+||.+.- .+..+.+++..++.++++++++++..|
T Consensus 68 ~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 126 (323)
T cd00704 68 TDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG 126 (323)
T ss_pred cChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 345689999999997762 145567777788888875666665544
No 293
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=97.48 E-value=0.0046 Score=70.54 Aligned_cols=138 Identities=12% Similarity=0.062 Sum_probs=90.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEE
Q 004892 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (724)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav 105 (724)
-+++++-++-....++.++.. .+-+|-|-=.+++++ |.+..+.. ......+.+ ..+....+|+|++|
T Consensus 221 G~~~peGyRKAlRlmkLAekf-gLPIVtLVDTpGA~p-G~~AEe~G----------q~~aIArnl-~amasl~VP~ISVV 287 (762)
T PLN03229 221 GMPTPHGYRKALRMMYYADHH-GFPIVTFIDTPGAYA-DLKSEELG----------QGEAIAHNL-RTMFGLKVPIVSIV 287 (762)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CchhHHHh----------HHHHHHHHH-HHHhCCCCCEEEEE
Confidence 467788888888888888754 455555543333333 33322210 112233444 45778999999999
Q ss_pred CccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecC
Q 004892 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (724)
Q Consensus 106 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~ 185 (724)
-|.|.|||.-....||+++|.+++.|+. +-|.++++..+... .+|.+ +...-.|+|++.+++|+||.|+|
T Consensus 288 iGeggSGGAlA~g~aD~VlMle~A~~sV------isPEgaAsILwkd~---~~A~e-AAe~lkiTa~dL~~lGiiD~IIp 357 (762)
T PLN03229 288 IGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSA---KAAPK-AAEKLRITAQELCRLQIADGIIP 357 (762)
T ss_pred eCCcchHHHHHhhcCCEEEEecCCeEEe------cCHHHHHHHHhcCc---ccHHH-HHHHcCCCHHHHHhCCCCeeecc
Confidence 9999888877777799999999987663 22444444433332 22222 34456899999999999999997
Q ss_pred c
Q 004892 186 S 186 (724)
Q Consensus 186 ~ 186 (724)
.
T Consensus 358 E 358 (762)
T PLN03229 358 E 358 (762)
T ss_pred C
Confidence 3
No 294
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=97.45 E-value=0.00036 Score=79.29 Aligned_cols=70 Identities=13% Similarity=0.167 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCH-HHHHHHHHHHHhh
Q 004892 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGA-NYVYTSLKKWSQL 689 (724)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~-~~~~~~~~~~~~~ 689 (724)
.++++.||++.++++||+.++++|++ |+++||.++..|+|++...-|||+..|+.|. +.+.+.++.+.+.
T Consensus 183 ~~gfi~nrl~~a~~~EA~~L~~~g~~-s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g~~~g~~~~~~~~~~~ 253 (495)
T PRK07531 183 IDAFVGDRLLEALWREALWLVKDGIA-TTEEIDDVIRYSFGLRWAQMGLFETYRIAGGEAGMRHFLAQFGPC 253 (495)
T ss_pred CcchhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhccCCCccccchHHHHHhcCcHHHHHHHHHHhchh
Confidence 47899999999999999999999999 9999999999999987666799999999984 4455555555443
No 295
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=97.44 E-value=0.00074 Score=72.16 Aligned_cols=102 Identities=12% Similarity=0.081 Sum_probs=70.8
Q ss_pred ceEEEEcCCCCcHHHHHHHH-HCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004892 309 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (724)
++|+|||.|.+|..+|..+. .-|.+|..||+........ ..+ +... ++ +.++
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~------------~~~-------------~~~~-~l~ell~ 199 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEE------------RFN-------------ARYC-DLDTLLQ 199 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHH------------hcC-------------cEec-CHHHHHH
Confidence 68999999999999999987 6789999999874321100 000 1112 33 5578
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHhcccC
Q 004892 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS 436 (724)
Q Consensus 387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~ 436 (724)
.||+|+.++|-+.+...-+=++....++++++++...-+ +.-..+.+.+.
T Consensus 200 ~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~ 251 (323)
T PRK15409 200 ESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQ 251 (323)
T ss_pred hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 999999999988887665556677888999988643323 33345555554
No 296
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.42 E-value=0.0019 Score=64.57 Aligned_cols=133 Identities=17% Similarity=0.211 Sum_probs=91.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCC---CceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEE
Q 004892 26 NALAIPIVAGLKDKFEEATSRD---DVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIV 102 (724)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~---~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 102 (724)
..+|..+...+...|..++..+ ++.+.| .+.|+...+| ..++ +.|...+.||.
T Consensus 61 ~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyI-NSpGGsv~aG----------------------laIy-d~m~~~~~~V~ 116 (221)
T PRK14514 61 TQIDDYTANTIQAQLLYLDSVDPGKDISIYI-NSPGGSVYAG----------------------LGIY-DTMQFISSDVA 116 (221)
T ss_pred CEEcHHHHHHHHHHHHHHhccCCCCCEEEEE-ECCCcchhhH----------------------HHHH-HHHHhcCCCEE
Confidence 3577888888888776666432 333332 4444322221 2445 66888999999
Q ss_pred EEECccccchhHHHHhhcCE--EEEeCCceeeCcccccCccCCcchhh-h-----------------hccccc--HHHHH
Q 004892 103 AAVEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQ-R-----------------LPRLVG--LSKAI 160 (724)
Q Consensus 103 aav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~~P~~g~~~-~-----------------l~r~~G--~~~a~ 160 (724)
..+-|.|.+.|.-|++++|. |++.++|++.+-...-|.. |-+. . +.+.-| .....
T Consensus 117 tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~---G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~ 193 (221)
T PRK14514 117 TICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQ---GQASDIEITAREIQKLKKELYTIIADHSGTPFDKVW 193 (221)
T ss_pred EEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccC---CCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 99999999999999999996 9999999998776643321 1111 0 111122 34555
Q ss_pred HHHHcCCCCCHHHHHHCCCcceecC
Q 004892 161 EMMLLSKSITSEEGWKLGLIDAVVT 185 (724)
Q Consensus 161 ~l~ltg~~i~a~eA~~~Glv~~vv~ 185 (724)
+++-....++|+||++.||||+|+.
T Consensus 194 ~~~~rd~wmtA~EA~eyGliD~Vi~ 218 (221)
T PRK14514 194 ADSDRDYWMTAQEAKEYGMIDEVLI 218 (221)
T ss_pred HHhhcCccCCHHHHHHcCCccEEee
Confidence 6677788899999999999999985
No 297
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=97.40 E-value=0.00013 Score=79.17 Aligned_cols=110 Identities=11% Similarity=0.090 Sum_probs=70.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (724)
++|||||.|.||+.+|..+...|++|++||+.....+ + ... ..++ +.+++
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~----------------~------------~~~-~~~l~ell~~ 167 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE----------------G------------DGD-FVSLERILEE 167 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc----------------c------------Ccc-ccCHHHHHhh
Confidence 6899999999999999999999999999997543210 0 001 1233 45689
Q ss_pred CCEEEEcccCChH---HHHHHH-HHHHhhCCCCcEEEecCCCCCH--HHHhcccC-CCCCEEEEecC
Q 004892 388 VDMVIEAVIESVP---LKQKIF-SELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFF 447 (724)
Q Consensus 388 aDlVIeav~e~~~---~k~~v~-~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~-~~~r~ig~h~~ 447 (724)
||+|+.++|-..+ ...-++ ++....++++++++..+-+-.+ ..+.+.+. ......++--|
T Consensus 168 aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~ 234 (381)
T PRK00257 168 CDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVW 234 (381)
T ss_pred CCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCC
Confidence 9999999996553 122333 4566678999988744434333 34444443 22233444433
No 298
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.40 E-value=0.0078 Score=62.92 Aligned_cols=162 Identities=14% Similarity=0.157 Sum_probs=102.5
Q ss_pred cCcEEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHH
Q 004892 12 NDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL 89 (724)
Q Consensus 12 ~~~v~~i~l~~p~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (724)
++.-..|.-|++. .-+++....+.+..+++.+... .+-+|.|.-.|+ +-+.| .. .. ...+. .....
T Consensus 119 ~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsgG-----armqE---gi-~s-L~~~a-k~~~a 186 (292)
T PRK05654 119 EGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASGG-----ARMQE---GL-LS-LMQMA-KTSAA 186 (292)
T ss_pred CCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCC-----cchhh---hh-hH-HHhHH-HHHHH
Confidence 3334445556664 4799999999999999998765 567777764442 22211 00 00 00111 11122
Q ss_pred HHHHHhcCCCcEEEEECccccchhH-HHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCC
Q 004892 90 VVNLIEDCKKPIVAAVEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKS 168 (724)
Q Consensus 90 ~~~~l~~~~kp~Iaav~G~a~GgG~-~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~ 168 (724)
+ .++.....|.|+++.|.|+||+. ..++.+|+++|.+++.+++.... .+...+|. ++ .-+.
T Consensus 187 ~-~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------vie~~~~e----~l--pe~~ 248 (292)
T PRK05654 187 L-KRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPR-----------VIEQTVRE----KL--PEGF 248 (292)
T ss_pred H-HHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHH-----------HHHhhhhh----hh--hhhh
Confidence 2 33556789999999999999965 45777999999999888763221 01111110 00 1112
Q ss_pred CCHHHHHHCCCcceecCcchHHHHHHHHHHHHHcc
Q 004892 169 ITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR 203 (724)
Q Consensus 169 i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 203 (724)
-+++-+.+.|+||.|+++.++.....++.+.+..+
T Consensus 249 ~~ae~~~~~G~vD~Vv~~~e~r~~l~~~L~~~~~~ 283 (292)
T PRK05654 249 QRAEFLLEHGAIDMIVHRRELRDTLASLLALHTKQ 283 (292)
T ss_pred cCHHHHHhCCCCcEEECHHHHHHHHHHHHHHHhcC
Confidence 26777789999999999999998888887765444
No 299
>PTZ00325 malate dehydrogenase; Provisional
Probab=97.40 E-value=0.00017 Score=76.75 Aligned_cols=97 Identities=16% Similarity=0.222 Sum_probs=59.4
Q ss_pred CCcceEEEEcC-CCCcHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccC-
Q 004892 306 RGVRKVAVIGG-GLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD- 381 (724)
Q Consensus 306 ~~~~kI~VIG~-G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~- 381 (724)
.+|+||+|||+ |.+|+.+|..++..+ .+++++|++. ++.-..++.+.. . .-.+...++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~--~~g~a~Dl~~~~---------------~-~~~v~~~td~ 67 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVG--APGVAADLSHID---------------T-PAKVTGYADG 67 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCC--CcccccchhhcC---------------c-CceEEEecCC
Confidence 46789999999 999999999999665 5899999932 111000111100 0 012332222
Q ss_pred ---ccCcCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEEe
Q 004892 382 ---YSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILAT 421 (724)
Q Consensus 382 ---~~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~s 421 (724)
++++++||+||.+.-. |....+++.+.+.++.. +.+|+.
T Consensus 68 ~~~~~~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~-~~iviv 123 (321)
T PTZ00325 68 ELWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAP-KAIVGI 123 (321)
T ss_pred CchHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEE
Confidence 6889999999988722 22244556666776644 445543
No 300
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.38 E-value=0.0006 Score=70.92 Aligned_cols=78 Identities=23% Similarity=0.268 Sum_probs=54.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC--CCc-EEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc-C
Q 004892 309 RKVAVIGGGLMGSGIATAHILN--NIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-E 384 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~--G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~ 384 (724)
.||+|||+|.||..++..+.+. +++ +.++|+++++.+...+. .+ ....++++ .
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~----------~~-------------~~~~~~~~el 58 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASK----------TG-------------AKACLSIDEL 58 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHh----------cC-------------CeeECCHHHH
Confidence 4899999999999999999876 455 56799998876653220 01 12234443 3
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHh
Q 004892 385 FKDVDMVIEAVIESVPLKQKIFSELEK 411 (724)
Q Consensus 385 ~~~aDlVIeav~e~~~~k~~v~~~l~~ 411 (724)
+.++|+|++|+| .+...++..++.+
T Consensus 59 l~~~DvVvi~a~--~~~~~~~~~~al~ 83 (265)
T PRK13304 59 VEDVDLVVECAS--VNAVEEVVPKSLE 83 (265)
T ss_pred hcCCCEEEEcCC--hHHHHHHHHHHHH
Confidence 478999999998 5555566655544
No 301
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.36 E-value=0.00088 Score=69.87 Aligned_cols=80 Identities=21% Similarity=0.139 Sum_probs=53.4
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHC--CCcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-
Q 004892 307 GVRKVAVIGGGLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (724)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~la~~--G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 382 (724)
+..||+|||+|.||..++..+.+. +++|+ ++|+++++.+...+. .+ .....+++
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~----------~g------------~~~~~~~~e 62 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWG----------LR------------RPPPVVPLD 62 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHh----------cC------------CCcccCCHH
Confidence 447899999999999999999874 78876 789998875543211 01 11122334
Q ss_pred cCcCCCCEEEEcccCChHHHHHHHHHHH
Q 004892 383 SEFKDVDMVIEAVIESVPLKQKIFSELE 410 (724)
Q Consensus 383 ~~~~~aDlVIeav~e~~~~k~~v~~~l~ 410 (724)
+.+.++|+|++|.|.+. -.++..+..
T Consensus 63 ell~~~D~Vvi~tp~~~--h~e~~~~aL 88 (271)
T PRK13302 63 QLATHADIVVEAAPASV--LRAIVEPVL 88 (271)
T ss_pred HHhcCCCEEEECCCcHH--HHHHHHHHH
Confidence 33577999999999443 345544443
No 302
>PRK06487 glycerate dehydrogenase; Provisional
Probab=97.36 E-value=0.00085 Score=71.64 Aligned_cols=97 Identities=12% Similarity=0.132 Sum_probs=70.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (724)
++|+|||.|.+|..+|..+...|.+|+.||+..... . .. ..++ +.++.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~-~-----------------------------~~-~~~l~ell~~ 197 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPA-R-----------------------------PD-RLPLDELLPQ 197 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcc-c-----------------------------cc-ccCHHHHHHh
Confidence 689999999999999999998999999999863210 0 00 0123 45789
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCC--CHHHHhcccC
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS 436 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~~~~~~~ 436 (724)
||+|+.++|-+.+...-+=++..+.++++++|+...-+- .-..+...+.
T Consensus 198 sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~ 248 (317)
T PRK06487 198 VDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALR 248 (317)
T ss_pred CCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 999999999888876655567778889999886443333 3345555554
No 303
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.35 E-value=0.00043 Score=73.87 Aligned_cols=91 Identities=18% Similarity=0.132 Sum_probs=60.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHH--CCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004892 309 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (724)
++|+|||+|.||..++..+.. .+.+|++|+|++++.++..+.+.+ .+. .+....+. +++
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~-------~g~-----------~~~~~~~~~~av 187 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRA-------QGF-----------DAEVVTDLEAAV 187 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------ceEEeCCHHHHH
Confidence 679999999999999986654 447899999999988776543321 110 12233444 467
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecC
Q 004892 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (724)
Q Consensus 386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (724)
++||+||.|.+... .++.. +.+++++.|...+
T Consensus 188 ~~aDIVi~aT~s~~----pvl~~--~~l~~g~~i~~ig 219 (314)
T PRK06141 188 RQADIISCATLSTE----PLVRG--EWLKPGTHLDLVG 219 (314)
T ss_pred hcCCEEEEeeCCCC----CEecH--HHcCCCCEEEeeC
Confidence 89999998887442 22221 3467777654433
No 304
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=97.35 E-value=0.0019 Score=63.53 Aligned_cols=134 Identities=19% Similarity=0.207 Sum_probs=93.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004892 27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (724)
Q Consensus 27 al~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa 104 (724)
.++.++..++...|..++.++..+-|.+ .+.|+ |+. ....++ +.|...+.||...
T Consensus 33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG------~v~----------------~g~aIy-d~m~~~~~~V~t~ 89 (196)
T PRK12551 33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGG------SVY----------------DGLGIF-DTMQHVKPDVHTV 89 (196)
T ss_pred eecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCc------chh----------------hHHHHH-HHHHhcCCCEEEE
Confidence 4889999999999999986543333333 44333 221 112445 6678889999999
Q ss_pred ECccccchhHHHHhhcCE--EEEeCCceeeCcccccCccCCcchhh-h-----------------hccccc--HHHHHHH
Q 004892 105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQ-R-----------------LPRLVG--LSKAIEM 162 (724)
Q Consensus 105 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~~P~~g~~~-~-----------------l~r~~G--~~~a~~l 162 (724)
+-|.|.+.|.-|++++|- |++.++|++..-...-|. .|-+. . +.+.-| .....++
T Consensus 90 ~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~---~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~ 166 (196)
T PRK12551 90 CVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGA---RGQASDIRIQADEILFLKERLNTELSERTGQPLERIQED 166 (196)
T ss_pred EEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCccc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 999999999999999985 889999998876654332 12110 0 111112 2445566
Q ss_pred HHcCCCCCHHHHHHCCCcceecCc
Q 004892 163 MLLSKSITSEEGWKLGLIDAVVTS 186 (724)
Q Consensus 163 ~ltg~~i~a~eA~~~Glv~~vv~~ 186 (724)
+-....++|+||++.||||+|++.
T Consensus 167 ~~rd~~msa~EA~eyGliD~I~~~ 190 (196)
T PRK12551 167 TDRDFFMSPSEAVEYGLIDLVIDK 190 (196)
T ss_pred hhcCcCCCHHHHHHcCCCcEEecc
Confidence 667788999999999999999865
No 305
>PRK06932 glycerate dehydrogenase; Provisional
Probab=97.34 E-value=0.0014 Score=69.80 Aligned_cols=109 Identities=14% Similarity=0.145 Sum_probs=74.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (724)
++|+|||.|.+|..+|..+..-|.+|+.||+.... . ...+ ..++ +.++.
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~------------~~~~----------------~~~l~ell~~ 197 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--V------------CREG----------------YTPFEEVLKQ 197 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--c------------cccc----------------cCCHHHHHHh
Confidence 68999999999999999999889999999975321 0 0000 1133 55789
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHhcccC-CCCCEEEEecC
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS-SQDRIIGAHFF 447 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~-~~~r~ig~h~~ 447 (724)
||+|+.++|-..+...-+=++....++++++|+...-+ +.-..+.+.+. ..-...++-.|
T Consensus 198 sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~ 260 (314)
T PRK06932 198 ADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVL 260 (314)
T ss_pred CCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecC
Confidence 99999999988776655556777788999988643333 33345555554 22233444433
No 306
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.32 E-value=0.00074 Score=71.37 Aligned_cols=90 Identities=18% Similarity=0.226 Sum_probs=62.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (724)
+||.|||+|.+|..++..+...|.+|+++|+++++.+.+.. .|.. .+. .+++ +.+++
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~-----------~G~~----------~~~-~~~l~~~l~~ 210 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE-----------MGLS----------PFH-LSELAEEVGK 210 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------cCCe----------eec-HHHHHHHhCC
Confidence 68999999999999999999999999999999876544321 1100 000 1122 45678
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (724)
+|+||.++|.. .+-++..+.++++++|++..+.
T Consensus 211 aDiVI~t~p~~-----~i~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 211 IDIIFNTIPAL-----VLTKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred CCEEEECCChh-----hhhHHHHHcCCCCcEEEEEccC
Confidence 99999999832 1223445567788888765554
No 307
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=97.31 E-value=0.0034 Score=63.55 Aligned_cols=99 Identities=14% Similarity=0.233 Sum_probs=76.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEE
Q 004892 23 PPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIV 102 (724)
Q Consensus 23 p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 102 (724)
|-.+.++.+..+.+.+++.....+..+ .++|.. -|+++.. ..++. +.|.+++.|++
T Consensus 67 Pi~~~I~i~dse~v~raI~~~~~~~~I-dLii~T------pGG~v~A----------------A~~I~-~~l~~~~~~v~ 122 (285)
T PF01972_consen 67 PIYRYIDIDDSEFVLRAIREAPKDKPI-DLIIHT------PGGLVDA----------------AEQIA-RALREHPAKVT 122 (285)
T ss_pred ccceeEcHhhHHHHHHHHHhcCCCCce-EEEEEC------CCCcHHH----------------HHHHH-HHHHhCCCCEE
Confidence 334678888999999999888766554 333432 3343321 11334 56788999999
Q ss_pred EEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcc
Q 004892 103 AAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFG 145 (724)
Q Consensus 103 aav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g 145 (724)
+.|+..|..+|.-++|+||..+|.+.+.+|--+..+|-.|..+
T Consensus 123 v~VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~s 165 (285)
T PF01972_consen 123 VIVPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAAS 165 (285)
T ss_pred EEECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChHH
Confidence 9999999999999999999999999999999999999888644
No 308
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.30 E-value=0.0017 Score=64.44 Aligned_cols=39 Identities=23% Similarity=0.378 Sum_probs=35.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 347 (724)
++|+|+|+|.||..+|+.|.+.|++|+++|++++.++..
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~ 67 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARA 67 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 589999999999999999999999999999998876654
No 309
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=97.30 E-value=0.0013 Score=72.90 Aligned_cols=122 Identities=20% Similarity=0.260 Sum_probs=74.4
Q ss_pred ceEEEEcCCC-CcHHHHHHHHHC-----CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc
Q 004892 309 RKVAVIGGGL-MGSGIATAHILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (724)
Q Consensus 309 ~kI~VIG~G~-mG~~iA~~la~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (724)
.||+|||+|. ....+...|++. +-+|+++|+++++++....-.++ ..+....+ -++..|+|.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~----~~~~~g~~--------~~v~~ttD~ 68 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKR----YVEEVGAD--------IKFEKTMDL 68 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHH----HHHhhCCC--------eEEEEeCCH
Confidence 3899999987 334455555543 45899999999998774332222 22221111 246778887
Q ss_pred -cCcCCCCEEEEccc----------------------------------CChHHHHHHHHHHHhhCCCCcEEE--ecCCC
Q 004892 383 -SEFKDVDMVIEAVI----------------------------------ESVPLKQKIFSELEKACPPHCILA--TNTST 425 (724)
Q Consensus 383 -~~~~~aDlVIeav~----------------------------------e~~~~k~~v~~~l~~~~~~~~ii~--s~ts~ 425 (724)
+++++||+||.++- -+..+..++.+++.+++ |+++++ ||...
T Consensus 69 ~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~-P~a~lin~TNP~d 147 (425)
T cd05197 69 EDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLS-PDAWYLNFTNPAG 147 (425)
T ss_pred HHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhC-CCcEEEecCChHH
Confidence 78999999998762 13446778888888887 455554 34333
Q ss_pred CCHHHHhcccCCCCCEEEE
Q 004892 426 IDLNIVGEKTSSQDRIIGA 444 (724)
Q Consensus 426 ~~~~~~~~~~~~~~r~ig~ 444 (724)
+....+... ....|++|+
T Consensus 148 i~t~a~~~~-~p~~rviG~ 165 (425)
T cd05197 148 EVTEAVRRY-VPPEKAVGL 165 (425)
T ss_pred HHHHHHHHh-CCCCcEEEE
Confidence 222222222 223466664
No 310
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=97.29 E-value=0.002 Score=62.40 Aligned_cols=74 Identities=20% Similarity=0.251 Sum_probs=48.2
Q ss_pred eEEEEcCCCCcHHHHHH-HHHC-----CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-
Q 004892 310 KVAVIGGGLMGSGIATA-HILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (724)
Q Consensus 310 kI~VIG~G~mG~~iA~~-la~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 382 (724)
||+|||+|..-.+.-.. .... +-+++++|+|+++++....-.+...+.. + . .-++..++|.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~---~-~--------~~~v~~ttd~~ 68 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEA---G-A--------DLKVEATTDRR 68 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHC---T-T--------SSEEEEESSHH
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhc---C-C--------CeEEEEeCCHH
Confidence 79999999987774322 2222 3489999999999887654444332211 1 1 1246678888
Q ss_pred cCcCCCCEEEEcc
Q 004892 383 SEFKDVDMVIEAV 395 (724)
Q Consensus 383 ~~~~~aDlVIeav 395 (724)
+++++||+||.++
T Consensus 69 eAl~gADfVi~~i 81 (183)
T PF02056_consen 69 EALEGADFVINQI 81 (183)
T ss_dssp HHHTTESEEEE--
T ss_pred HHhCCCCEEEEEe
Confidence 7899999999886
No 311
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.29 E-value=0.00064 Score=65.96 Aligned_cols=95 Identities=21% Similarity=0.287 Sum_probs=59.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCH---HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccC----
Q 004892 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS---EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD---- 381 (724)
Q Consensus 310 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~---~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~---- 381 (724)
||.|||+|.+|+.++..|++.|. +++++|.+. +.+.+-.- .. -+-|+-..+.+...+.++....+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~-----~~--~~vg~~Ka~~~~~~l~~lnp~v~i~~~ 73 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQY-----FL--SQIGEPKVEALKENLREINPFVKIEAI 73 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccc-----cH--hhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence 68999999999999999999999 599999886 33221110 00 01122222222222222221111
Q ss_pred --------c-cCcCCCCEEEEcccCChHHHHHHHHHHHhh
Q 004892 382 --------Y-SEFKDVDMVIEAVIESVPLKQKIFSELEKA 412 (724)
Q Consensus 382 --------~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~~ 412 (724)
. +.++++|+||+| .++.+.+..+.......
T Consensus 74 ~~~~~~~~~~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~ 112 (174)
T cd01487 74 NIKIDENNLEGLFGDCDIVVEA-FDNAETKAMLAESLLGN 112 (174)
T ss_pred EeecChhhHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHH
Confidence 1 346889999999 56888887787776665
No 312
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.28 E-value=0.00024 Score=65.88 Aligned_cols=74 Identities=18% Similarity=0.171 Sum_probs=52.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCc-EEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004892 308 VRKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (724)
-++|.|||+|-||++++..|+..|.+ |++++|+.+++++..+.+ ....+ .....++. +.+
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~--------~~~~~----------~~~~~~~~~~~~ 73 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF--------GGVNI----------EAIPLEDLEEAL 73 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH--------TGCSE----------EEEEGGGHCHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc--------Ccccc----------ceeeHHHHHHHH
Confidence 37899999999999999999999986 999999999877754432 00000 01112222 456
Q ss_pred CCCCEEEEcccCCh
Q 004892 386 KDVDMVIEAVIESV 399 (724)
Q Consensus 386 ~~aDlVIeav~e~~ 399 (724)
.++|+||.|+|-..
T Consensus 74 ~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 74 QEADIVINATPSGM 87 (135)
T ss_dssp HTESEEEE-SSTTS
T ss_pred hhCCeEEEecCCCC
Confidence 78999999997543
No 313
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.28 E-value=0.00054 Score=71.64 Aligned_cols=71 Identities=18% Similarity=0.215 Sum_probs=54.5
Q ss_pred ceEEEEc-CCCCcHHHHHHHHHCCCcEEEEe-CCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004892 309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKE-VNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (724)
Q Consensus 309 ~kI~VIG-~G~mG~~iA~~la~~G~~V~l~d-~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 386 (724)
++|+||| .|.||.+||..|.++|++|++|+ ++++. + +.++
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l-~-------------------------------------e~~~ 200 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDL-P-------------------------------------AVCR 200 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCH-H-------------------------------------HHHh
Confidence 7899999 99999999999999999999995 66421 1 2356
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004892 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (724)
Q Consensus 387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (724)
.||+||.|++....+... ++++++++++.+.
T Consensus 201 ~ADIVIsavg~~~~v~~~-------~lk~GavVIDvGi 231 (296)
T PRK14188 201 RADILVAAVGRPEMVKGD-------WIKPGATVIDVGI 231 (296)
T ss_pred cCCEEEEecCChhhcchh-------eecCCCEEEEcCC
Confidence 899999999855433322 2788998876543
No 314
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.27 E-value=0.01 Score=61.71 Aligned_cols=159 Identities=17% Similarity=0.189 Sum_probs=100.1
Q ss_pred CcEEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHH
Q 004892 13 DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (724)
Q Consensus 13 ~~v~~i~l~~p~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (724)
+.-..|.-+++. .-+++....+.+..+++.+... .+-+|.|+..|+. -+.|-. .....+.+ ....+
T Consensus 119 G~~V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dSgGa-----RmqEg~-----~sL~~~ak-~~~~~ 186 (285)
T TIGR00515 119 GMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSASGGA-----RMQEAL-----LSLMQMAK-TSAAL 186 (285)
T ss_pred CEEEEEEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCCc-----ccccch-----hHHHhHHH-HHHHH
Confidence 333344445554 4789999999999999988754 5677777654442 111100 00111111 11222
Q ss_pred HHHHhcCCCcEEEEECccccchhH-HHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCC
Q 004892 91 VNLIEDCKKPIVAAVEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169 (724)
Q Consensus 91 ~~~l~~~~kp~Iaav~G~a~GgG~-~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i 169 (724)
.++.....|.|+++-|+|.||+. ..++.+|+++|.+++.+++....+ +...+|. -+.-+--
T Consensus 187 -~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGprV-----------ie~ti~e------~lpe~~q 248 (285)
T TIGR00515 187 -AKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPRV-----------IEQTVRE------KLPEGFQ 248 (285)
T ss_pred -HHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHHH-----------HHHHhcC------ccchhcC
Confidence 33566789999999999999965 456799999999999888733321 1111110 0111122
Q ss_pred CHHHHHHCCCcceecCcchHHHHHHHHHHHHH
Q 004892 170 TSEEGWKLGLIDAVVTSEELLKVSRLWALDIA 201 (724)
Q Consensus 170 ~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la 201 (724)
+++-+.+.|+||.|+++.++.+...++..-+.
T Consensus 249 ~ae~~~~~G~vD~iv~~~~~r~~l~~~L~~~~ 280 (285)
T TIGR00515 249 TSEFLLEHGAIDMIVHRPEMKKTLASLLAKLQ 280 (285)
T ss_pred CHHHHHhCCCCcEEECcHHHHHHHHHHHHHHh
Confidence 56668899999999999999888877776543
No 315
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.24 E-value=0.0033 Score=62.01 Aligned_cols=135 Identities=19% Similarity=0.301 Sum_probs=94.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCC---ceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEE
Q 004892 26 NALAIPIVAGLKDKFEEATSRDD---VKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIV 102 (724)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~---v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 102 (724)
..++.++...+...|-.++.++. +.+.| .+.|+ |+. .+..++ +.|...+-||.
T Consensus 34 ~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~I-NSpGG------~v~----------------~GlaIy-d~m~~~~~~V~ 89 (201)
T PRK14513 34 TPIESQMANTIVAQLLLLDSQNPEQEIQMYI-NCPGG------EVY----------------AGLAIY-DTMRYIKAPVS 89 (201)
T ss_pred CEEcHHHHHHHHHHHHHhhccCCCCCEEEEE-ECCCC------chh----------------hHHHHH-HHHHhcCCCEE
Confidence 35888888888888888876433 33332 44433 321 122455 66888999999
Q ss_pred EEECccccchhHHHHhhcCE--EEEeCCceeeCcccccCccCCcch-hhh-----------------hccccc--HHHHH
Q 004892 103 AAVEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGG-TQR-----------------LPRLVG--LSKAI 160 (724)
Q Consensus 103 aav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~~P~~g~-~~~-----------------l~r~~G--~~~a~ 160 (724)
..+.|.|.+.|.-|++++|- |++.++|++-+....-|. .|. ... +.+.-| .....
T Consensus 90 Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~---~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~ 166 (201)
T PRK14513 90 TICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGF---RGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLL 166 (201)
T ss_pred EEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 99999999999999999995 999999999887765443 221 111 111122 34555
Q ss_pred HHHHcCCCCCHHHHHHCCCcceecCcc
Q 004892 161 EMMLLSKSITSEEGWKLGLIDAVVTSE 187 (724)
Q Consensus 161 ~l~ltg~~i~a~eA~~~Glv~~vv~~~ 187 (724)
+++-....++|+||++.||||+|+++.
T Consensus 167 ~~~~rd~~msa~EA~eyGliD~I~~~~ 193 (201)
T PRK14513 167 RDMERDYFMSPEEAKAYGLIDSVIEPT 193 (201)
T ss_pred HHhccCcccCHHHHHHcCCCcEEeccC
Confidence 666677889999999999999998653
No 316
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=97.24 E-value=0.0013 Score=65.95 Aligned_cols=105 Identities=25% Similarity=0.338 Sum_probs=71.3
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc
Q 004892 308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 385 (724)
..||.|||.|..|.+.|..+..+|. +++++|.++++++...-.+++.. .--...++....|+..-
T Consensus 20 ~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s-------------~f~~~~~V~~~~Dy~~s 86 (332)
T KOG1495|consen 20 HNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGS-------------AFLSTPNVVASKDYSVS 86 (332)
T ss_pred CceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhcccc-------------ccccCCceEecCccccc
Confidence 5799999999999999999999887 89999999998765332222110 00112467777889999
Q ss_pred CCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEEecCCCC
Q 004892 386 KDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTI 426 (724)
Q Consensus 386 ~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~ 426 (724)
+++++||..+-- +.++.+.++.++.++ +|++++...+...
T Consensus 87 a~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~y-Spd~~llvvSNPV 140 (332)
T KOG1495|consen 87 ANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKY-SPDCILLVVSNPV 140 (332)
T ss_pred CCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecCch
Confidence 999999987631 333444555555555 5666665444333
No 317
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=97.23 E-value=0.00069 Score=72.38 Aligned_cols=101 Identities=17% Similarity=0.160 Sum_probs=63.9
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccc
Q 004892 310 KVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV 379 (724)
Q Consensus 310 kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 379 (724)
||+|||+ |.+|+.+|..++..|. +++++|++++. ++.-..++.+.. . .....+..+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~-------------~-~~~~~~~~~ 66 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCA-------------F-PLLDGVVPT 66 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhccc-------------c-hhcCceecc
Confidence 6999999 9999999999998655 59999996543 221111111100 0 011223333
Q ss_pred -cCccCcCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004892 380 -LDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS 424 (724)
Q Consensus 380 -~~~~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (724)
.+++++++||+||.+.-- +..+.+++..++.++.+++++++..|.
T Consensus 67 ~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsN 126 (324)
T TIGR01758 67 HDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGN 126 (324)
T ss_pred CChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 347899999999987621 333566677778888766776665443
No 318
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=97.16 E-value=0.00035 Score=75.77 Aligned_cols=110 Identities=14% Similarity=0.082 Sum_probs=69.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (724)
++|||||.|.||+.+|..+...|.+|.+||+.... . + .... ..++ +.++.
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~--~---------------~-----------~~~~-~~~L~ell~~ 167 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD--R---------------G-----------DEGD-FRSLDELVQE 167 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc--c---------------c-----------cccc-cCCHHHHHhh
Confidence 68999999999999999999999999999964321 0 0 0001 1234 45689
Q ss_pred CCEEEEcccCChH----HHHHHHHHHHhhCCCCcEEEecCCCC--CHHHHhcccC-CCCCEEEEecC
Q 004892 388 VDMVIEAVIESVP----LKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS-SQDRIIGAHFF 447 (724)
Q Consensus 388 aDlVIeav~e~~~----~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~~~~~~~-~~~r~ig~h~~ 447 (724)
||+|+..+|-..+ ...-+=++....++++++++..+-+- .-..+.+.+. .+....++-.|
T Consensus 168 sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~ 234 (378)
T PRK15438 168 ADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVW 234 (378)
T ss_pred CCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecC
Confidence 9999999985543 22222245666788999887433333 3334544443 23333444433
No 319
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=97.15 E-value=0.0011 Score=62.88 Aligned_cols=102 Identities=27% Similarity=0.368 Sum_probs=65.0
Q ss_pred HhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccc------------cCcc---------CCcc-----hh
Q 004892 94 IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVI---------PGFG-----GT 147 (724)
Q Consensus 94 l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~G~~---------P~~g-----~~ 147 (724)
..+..|||+|.++|.|..++.-|+.+||-+++.+.+.++..-+. +|+- ...+ .+
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s 81 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS 81 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence 35689999999999999999999999999999998887765554 3321 1111 00
Q ss_pred ----hhhcccc-----------------cHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHH
Q 004892 148 ----QRLPRLV-----------------GLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLW 196 (724)
Q Consensus 148 ----~~l~r~~-----------------G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~ 196 (724)
..+.+.+ ... ..+-+..|..+++++|++.||||++-..+++.+.+.+.
T Consensus 82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~-~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~~ 150 (154)
T PF01343_consen 82 EEERENLQELLDELYDQFVNDVAEGRGLSPD-DVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAKL 150 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HH-HHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCHH-HHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHHH
Confidence 0000000 111 11225789999999999999999999888777665543
No 320
>PRK04148 hypothetical protein; Provisional
Probab=97.12 E-value=0.0042 Score=56.86 Aligned_cols=94 Identities=16% Similarity=0.096 Sum_probs=66.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (724)
+||.+||+| -|..+|..|++.|++|+..|+++++++.+.+... ..+ .+.+ +..+.+.-+++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~----~~v-------------~dDl-f~p~~~~y~~a 78 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGL----NAF-------------VDDL-FNPNLEIYKNA 78 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCC----eEE-------------ECcC-CCCCHHHHhcC
Confidence 589999999 8999999999999999999999998776543210 000 0011 12334556899
Q ss_pred CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecC
Q 004892 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (724)
Q Consensus 389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (724)
|+|...=| +.-.+.-+-++.+.+..+.+|..-+
T Consensus 79 ~liysirp--p~el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 79 KLIYSIRP--PRDLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred CEEEEeCC--CHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 99999887 4445555667777777787775433
No 321
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.12 E-value=0.0012 Score=70.53 Aligned_cols=92 Identities=21% Similarity=0.157 Sum_probs=58.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (724)
++|+|||+|.||..++..+...| .+|+++||++++.+...+.+ |. .....++. +.+.
T Consensus 179 ~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~----------g~-----------~~~~~~~~~~~l~ 237 (311)
T cd05213 179 KKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL----------GG-----------NAVPLDELLELLN 237 (311)
T ss_pred CEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc----------CC-----------eEEeHHHHHHHHh
Confidence 68999999999999999998865 68999999998765543221 10 00001112 4567
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhC-CCCcEEEecC
Q 004892 387 DVDMVIEAVIESVPLKQKIFSELEKAC-PPHCILATNT 423 (724)
Q Consensus 387 ~aDlVIeav~e~~~~k~~v~~~l~~~~-~~~~ii~s~t 423 (724)
++|+||.|++.+.. ..++..+.... ..+.+++..+
T Consensus 238 ~aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viDla 273 (311)
T cd05213 238 EADVVISATGAPHY--AKIVERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred cCCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEEeC
Confidence 89999999985443 34444432222 2345665443
No 322
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=97.12 E-value=0.0017 Score=71.78 Aligned_cols=121 Identities=24% Similarity=0.291 Sum_probs=72.9
Q ss_pred ceEEEEcCCCCcH-HHHHHHHHC-----CCcEEEEeCC-HHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccC
Q 004892 309 RKVAVIGGGLMGS-GIATAHILN-----NIYVVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD 381 (724)
Q Consensus 309 ~kI~VIG~G~mG~-~iA~~la~~-----G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 381 (724)
.||+|||+|..-+ .+...+++. +-+|+++|++ +++++....-.+.. .+....+ -++..|+|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~----~~~~~~~--------~~v~~t~d 68 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRM----VKKAGLP--------IKVHLTTD 68 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHH----HHhhCCC--------eEEEEeCC
Confidence 4899999998643 444555542 3589999999 78876643333322 2221110 24667778
Q ss_pred c-cCcCCCCEEEEcccC----------------------------------ChHHHHHHHHHHHhhCCCCcEEE--ecCC
Q 004892 382 Y-SEFKDVDMVIEAVIE----------------------------------SVPLKQKIFSELEKACPPHCILA--TNTS 424 (724)
Q Consensus 382 ~-~~~~~aDlVIeav~e----------------------------------~~~~k~~v~~~l~~~~~~~~ii~--s~ts 424 (724)
. +++.+||+||.++-- +..+..++.+++.++++ +++++ ||..
T Consensus 69 ~~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~P-da~lin~TNP~ 147 (419)
T cd05296 69 RREALEGADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAP-DAWLINFTNPA 147 (419)
T ss_pred HHHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCC-CeEEEEecCHH
Confidence 7 789999999988621 11466678888888875 55554 4444
Q ss_pred CCCHHHHhcccCCCCCEEEE
Q 004892 425 TIDLNIVGEKTSSQDRIIGA 444 (724)
Q Consensus 425 ~~~~~~~~~~~~~~~r~ig~ 444 (724)
.+....+.... +.|++|+
T Consensus 148 ~ivt~a~~k~~--~~rviGl 165 (419)
T cd05296 148 GIVTEAVLRHT--GDRVIGL 165 (419)
T ss_pred HHHHHHHHHhc--cCCEEee
Confidence 33222232222 5566664
No 323
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=97.10 E-value=0.012 Score=59.60 Aligned_cols=142 Identities=16% Similarity=0.158 Sum_probs=86.9
Q ss_pred CCCHHHHHHHHHHHHHH-hcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHH--HHHhcCCCcEEE
Q 004892 27 ALAIPIVAGLKDKFEEA-TSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV--NLIEDCKKPIVA 103 (724)
Q Consensus 27 al~~~~~~~l~~~l~~~-~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~kp~Ia 103 (724)
.++.+-...+...+... +++..+-+|.|.=.+ .|-.|..-++.. +.....+++. ....+.+.|+|+
T Consensus 44 ~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtp-G~~~g~~aE~~G----------~~~a~A~l~~a~a~a~~~~vP~Is 112 (238)
T TIGR03134 44 EVGLDEALALAQAVLDVIEADDKRPIVVLVDTP-SQAYGRREELLG----------INQALAHLAKALALARLAGHPVIG 112 (238)
T ss_pred cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCC-CCCCCHHHHHHH----------HHHHHHHHHHHHHHhhcCCCCEEE
Confidence 68877778888888774 555677777765433 244443322221 1122222220 224456699999
Q ss_pred EECccccchhH-HHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcC--CCCCHHHHHHCCCc
Q 004892 104 AVEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLS--KSITSEEGWKLGLI 180 (724)
Q Consensus 104 av~G~a~GgG~-~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg--~~i~a~eA~~~Glv 180 (724)
.|-|.++|||+ .+.+.+|.++|.+++.++ .++.-+++..+-+-. ..+.++.-+- ...++..+.++|+|
T Consensus 113 vI~g~a~ggg~lamg~~ad~v~Alp~A~i~-------vm~~e~aa~I~~~~~--~~~~e~a~~~~~~a~~~~~~~~~G~v 183 (238)
T TIGR03134 113 LIYGKAISGAFLAHGLQADRIIALPGAMVH-------VMDLESMARVTKRSV--EELEALAKSSPVFAPGIENFVKLGGV 183 (238)
T ss_pred EEeCCccHHHHHHHccCcCeEEEcCCcEEE-------ecCHHHHHHHHccCH--hHHHHHHHhhhhhccCHHHHHhCCCc
Confidence 99999998875 555558888877666554 555555544444333 3444443332 34677889999999
Q ss_pred ceecCcch
Q 004892 181 DAVVTSEE 188 (724)
Q Consensus 181 ~~vv~~~~ 188 (724)
|.|+++.+
T Consensus 184 d~vi~~~~ 191 (238)
T TIGR03134 184 HALLDVAD 191 (238)
T ss_pred cEEeCCCC
Confidence 99997654
No 324
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.08 E-value=0.013 Score=61.08 Aligned_cols=194 Identities=14% Similarity=0.116 Sum_probs=121.3
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc----c
Q 004892 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----S 383 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~ 383 (724)
...|+.||++.||..++.+.+.+|+.|.+|+|+..+++....+-.+ | ..|....++ .
T Consensus 6 ~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak--------~-----------~~i~ga~S~ed~v~ 66 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAK--------G-----------TKIIGAYSLEDFVS 66 (487)
T ss_pred ccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhc--------C-----------CcccCCCCHHHHHH
Confidence 4579999999999999999999999999999999998876543211 1 012222333 2
Q ss_pred CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC-CCC-HHHHhcc-cCCCCCEEEEecC---CCCCCCCeee
Q 004892 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-TID-LNIVGEK-TSSQDRIIGAHFF---SPAHVMPLLE 457 (724)
Q Consensus 384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts-~~~-~~~~~~~-~~~~~r~ig~h~~---~p~~~~~lve 457 (724)
-++.--.||..|--.. ....++++|.+++.++-||++... .++ ...-... ...---|+|+-.- ..++.+| .
T Consensus 67 klk~PR~iillvkAG~-pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP--S 143 (487)
T KOG2653|consen 67 KLKKPRVIILLVKAGA-PVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP--S 143 (487)
T ss_pred hcCCCcEEEEEeeCCC-cHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC--c
Confidence 3456677777664222 344677899999999888886332 222 2211111 1222235555431 1112222 1
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCe-----e--EEEcC-CCchhh----hhhh---hHHHHHHHHHHHc--CCCHHHHHH
Q 004892 458 IVRTERTSAQVILDLMTVGKIIKKV-----P--VVVGN-CTGFAV----NRAF---FPYSQSARLLVSL--GVDVFRIDS 520 (724)
Q Consensus 458 ii~~~~t~~e~~~~~~~l~~~lGk~-----~--v~v~d-~pG~i~----nRl~---~~~~~Ea~~l~~~--Gv~~~~ID~ 520 (724)
++||. ++++...+++++..+... | .++++ ..|..+ |-+= +.++.|+..+++. |++-.+|-.
T Consensus 144 lMpGg--~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~ 221 (487)
T KOG2653|consen 144 LMPGG--SKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAE 221 (487)
T ss_pred cCCCC--ChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 44554 788888888888766322 2 44554 345433 4442 3677899999988 578889988
Q ss_pred HHHhc
Q 004892 521 AIRSF 525 (724)
Q Consensus 521 a~~~~ 525 (724)
+...+
T Consensus 222 vF~~W 226 (487)
T KOG2653|consen 222 VFDDW 226 (487)
T ss_pred HHHhh
Confidence 87433
No 325
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.07 E-value=0.0077 Score=61.74 Aligned_cols=87 Identities=20% Similarity=0.177 Sum_probs=65.1
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHH-HHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004892 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 386 (724)
-+||+|||.|.-|.+-|.+|..+|.+|++--|.... -+++ .+.| ...-+-.++++
T Consensus 18 gK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA-----------~~dG-------------f~V~~v~ea~k 73 (338)
T COG0059 18 GKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKA-----------KEDG-------------FKVYTVEEAAK 73 (338)
T ss_pred CCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHH-----------HhcC-------------CEeecHHHHhh
Confidence 369999999999999999999999998776554433 2222 2222 22233337889
Q ss_pred CCCEEEEcccCChHHHHHHHH-HHHhhCCCCcEEE
Q 004892 387 DVDMVIEAVIESVPLKQKIFS-ELEKACPPHCILA 420 (724)
Q Consensus 387 ~aDlVIeav~e~~~~k~~v~~-~l~~~~~~~~ii~ 420 (724)
.+|+|+.-+| ...-.++++ +|.+.++.+..+.
T Consensus 74 ~ADvim~L~P--De~q~~vy~~~I~p~Lk~G~aL~ 106 (338)
T COG0059 74 RADVVMILLP--DEQQKEVYEKEIAPNLKEGAALG 106 (338)
T ss_pred cCCEEEEeCc--hhhHHHHHHHHhhhhhcCCceEE
Confidence 9999999999 455568887 7999999998764
No 326
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=97.06 E-value=0.058 Score=55.76 Aligned_cols=139 Identities=15% Similarity=0.213 Sum_probs=81.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhcC----CCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCc
Q 004892 25 VNALAIPIVAGLKDKFEEATSR----DDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKP 100 (724)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d----~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 100 (724)
--++....-+.+..+++.+..| ..+-+|.|.-.|+ +-+.+-.. . ...+.+ .+..+ ..+... .|
T Consensus 72 GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgG-----aRlqEg~~----~-L~~~a~-i~~~~-~~ls~~-vP 138 (274)
T TIGR03133 72 GGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGG-----VRLQEANA----G-LIAIAE-IMRAI-LDARAA-VP 138 (274)
T ss_pred CcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCC-----cChhhhHH----H-HHHHHH-HHHHH-HHHhCC-CC
Confidence 3678888888888888888752 1234666643332 23322100 0 001111 11122 124444 99
Q ss_pred EEEEECcc--ccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccH--HHHHHHHHcCCCCCHHHHHH
Q 004892 101 IVAAVEGL--ALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL--SKAIEMMLLSKSITSEEGWK 176 (724)
Q Consensus 101 ~Iaav~G~--a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~--~~a~~l~ltg~~i~a~eA~~ 176 (724)
+|+++-|. |+||+..++.+||++||++++++++.-. ..+....|. -...+--|.-+.+.++....
T Consensus 139 ~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP-----------~VIe~~~G~e~~~~~d~~l~~~~lGG~~~~~ 207 (274)
T TIGR03133 139 VIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGP-----------EVIEQEAGVEEFDSRDRALVWRTTGGKHRFL 207 (274)
T ss_pred EEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCH-----------HHHHHhcCCCccCHHHhcccccccchHhHhh
Confidence 99999999 8999999999999999999888776211 111111221 11222223334455667788
Q ss_pred CCCcceecCcc
Q 004892 177 LGLIDAVVTSE 187 (724)
Q Consensus 177 ~Glv~~vv~~~ 187 (724)
.|++|.+++++
T Consensus 208 sG~~D~~v~dd 218 (274)
T TIGR03133 208 SGDADVLVEDD 218 (274)
T ss_pred cccceEEeCCH
Confidence 99999999764
No 327
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=97.04 E-value=0.0011 Score=70.62 Aligned_cols=90 Identities=18% Similarity=0.111 Sum_probs=67.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (724)
+++||||.|.+|..+|+.+.--|.+|..||+++.. +.. + . ......+..+.++.|
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~-~~~-~-----------~------------~~~~y~~l~ell~~s 201 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNP-EAE-K-----------E------------LGARYVDLDELLAES 201 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCCh-HHH-h-----------h------------cCceeccHHHHHHhC
Confidence 78999999999999999999778899999998741 110 0 0 012222222568999
Q ss_pred CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004892 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (724)
Q Consensus 389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (724)
|+|+..+|-..+...-+=++..+.++++++|+ ||+
T Consensus 202 Dii~l~~Plt~~T~hLin~~~l~~mk~ga~lV-Nta 236 (324)
T COG1052 202 DIISLHCPLTPETRHLINAEELAKMKPGAILV-NTA 236 (324)
T ss_pred CEEEEeCCCChHHhhhcCHHHHHhCCCCeEEE-ECC
Confidence 99999999888877666677888899998875 555
No 328
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.04 E-value=0.0015 Score=70.01 Aligned_cols=93 Identities=10% Similarity=-0.006 Sum_probs=62.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHH--CCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004892 309 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (724)
++|+|||+|.||...+..+.. ...+|.+||+++++.+...+++++ .| -.+...++. +++
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~-------~g-----------~~v~~~~~~~eav 190 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASD-------YE-----------VPVRAATDPREAV 190 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------hC-----------CcEEEeCCHHHHh
Confidence 679999999999997766644 356899999999998776543321 11 012333444 678
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 004892 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (724)
Q Consensus 386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (724)
++||+||.|+|....+ +. .+.+++++.|.+..|.
T Consensus 191 ~~aDiVitaT~s~~P~----~~--~~~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 191 EGCDILVTTTPSRKPV----VK--ADWVSEGTHINAIGAD 224 (325)
T ss_pred ccCCEEEEecCCCCcE----ec--HHHcCCCCEEEecCCC
Confidence 9999999999854322 21 2345788776554443
No 329
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=97.04 E-value=0.0046 Score=65.28 Aligned_cols=104 Identities=13% Similarity=-0.004 Sum_probs=66.7
Q ss_pred CCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCC-CCHHHHHHhhcCcccccCccCcCCCCEEEEccc
Q 004892 318 LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDYSEFKDVDMVIEAVI 396 (724)
Q Consensus 318 ~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~ 396 (724)
.||+.+|..|+++|++|++++|+ +..+...+ .|. +....-......+..+++.+.+.++|+||.|+.
T Consensus 1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~-----------~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vK 68 (293)
T TIGR00745 1 AVGSLYGAYLARAGHDVTLLARG-EQLEALNQ-----------EGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVK 68 (293)
T ss_pred CchHHHHHHHHhCCCcEEEEecH-HHHHHHHH-----------CCcEEEecCCcEEEcccccccChhhcCCCCEEEEecc
Confidence 37999999999999999999997 44444321 110 000000000002333455555779999999997
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHH-Hhccc
Q 004892 397 ESVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKT 435 (724)
Q Consensus 397 e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~-~~~~~ 435 (724)
..-..++++.+.+++.++++|++...++...+ +...+
T Consensus 69 --s~~~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~ 106 (293)
T TIGR00745 69 --AYQTEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELL 106 (293)
T ss_pred --chhHHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHh
Confidence 34456788899999999898887666765443 44433
No 330
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.04 E-value=0.00098 Score=71.99 Aligned_cols=79 Identities=27% Similarity=0.232 Sum_probs=54.8
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004892 308 VRKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (724)
|+||.|||+|.+|+.+|..|+++| .+|++.||+.++++++...... .++.-.++..+ ...+ +.+
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~----~v~~~~vD~~d----------~~al~~li 66 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG----KVEALQVDAAD----------VDALVALI 66 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc----cceeEEecccC----------hHHHHHHH
Confidence 578999999999999999999999 8999999999998887543211 00100011000 0011 457
Q ss_pred CCCCEEEEcccCChH
Q 004892 386 KDVDMVIEAVIESVP 400 (724)
Q Consensus 386 ~~aDlVIeav~e~~~ 400 (724)
++.|+||.|+|....
T Consensus 67 ~~~d~VIn~~p~~~~ 81 (389)
T COG1748 67 KDFDLVINAAPPFVD 81 (389)
T ss_pred hcCCEEEEeCCchhh
Confidence 888999999994433
No 331
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.02 E-value=0.0024 Score=70.13 Aligned_cols=86 Identities=19% Similarity=0.183 Sum_probs=60.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (724)
++|+|+|+|.+|..+|..+...|.+|+++|+++.+++.+.. .|. ......+.++++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~-----------~G~-------------~~~~~~e~v~~a 258 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM-----------EGY-------------EVMTMEEAVKEG 258 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh-----------cCC-------------EEccHHHHHcCC
Confidence 68999999999999999999999999999999988666432 121 000111446789
Q ss_pred CEEEEcccCChHHHHHHHH-HHHhhCCCCcEEEecC
Q 004892 389 DMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNT 423 (724)
Q Consensus 389 DlVIeav~e~~~~k~~v~~-~l~~~~~~~~ii~s~t 423 (724)
|+||+|.... .++. .....++++.+++...
T Consensus 259 DVVI~atG~~-----~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 259 DIFVTTTGNK-----DIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CEEEECCCCH-----HHHHHHHHhcCCCCcEEEEeC
Confidence 9999997522 2232 3456678888776433
No 332
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.01 E-value=0.0012 Score=68.40 Aligned_cols=70 Identities=14% Similarity=0.225 Sum_probs=53.6
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004892 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (724)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (724)
++|+|||. |.||.++|..|.++|+.|++|....+ ++ +.++
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~--------------------------------------~l~~~~~ 200 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTR--------------------------------------NLAEVAR 200 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCC--------------------------------------CHHHHHh
Confidence 68999999 99999999999999999999932211 11 3467
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecC
Q 004892 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (724)
Q Consensus 387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (724)
+||+||.|++....+..+ .+++++++++.+
T Consensus 201 ~ADIVI~avg~~~~v~~~-------~ik~GavVIDvg 230 (284)
T PRK14179 201 KADILVVAIGRGHFVTKE-------FVKEGAVVIDVG 230 (284)
T ss_pred hCCEEEEecCccccCCHH-------HccCCcEEEEec
Confidence 899999999855444333 278899887644
No 333
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.99 E-value=0.0017 Score=71.47 Aligned_cols=87 Identities=22% Similarity=0.178 Sum_probs=60.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (724)
++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+.. .| ....+-.+.++++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~-----------~G-------------~~v~~l~eal~~a 268 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM-----------DG-------------FRVMTMEEAAELG 268 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh-----------cC-------------CEecCHHHHHhCC
Confidence 68999999999999999999999999999999877543311 11 0001111446789
Q ss_pred CEEEEcccCChHHHHHHHH-HHHhhCCCCcEEEecCC
Q 004892 389 DMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTS 424 (724)
Q Consensus 389 DlVIeav~e~~~~k~~v~~-~l~~~~~~~~ii~s~ts 424 (724)
|+||+|+.. . .++. +....++++++++....
T Consensus 269 DVVI~aTG~-~----~vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 269 DIFVTATGN-K----DVITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred CEEEECCCC-H----HHHHHHHHhcCCCCCEEEEcCC
Confidence 999998742 2 2333 45667889988865443
No 334
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.99 E-value=0.0019 Score=70.68 Aligned_cols=86 Identities=23% Similarity=0.184 Sum_probs=60.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (724)
++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+. ..|. ...+..+.++++
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~-----------~~G~-------------~v~~leeal~~a 251 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAA-----------MDGF-------------RVMTMEEAAKIG 251 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH-----------hcCC-------------EeCCHHHHHhcC
Confidence 6899999999999999999999999999999987643321 1121 101111456789
Q ss_pred CEEEEcccCChHHHHHHHH-HHHhhCCCCcEEEecC
Q 004892 389 DMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNT 423 (724)
Q Consensus 389 DlVIeav~e~~~~k~~v~~-~l~~~~~~~~ii~s~t 423 (724)
|+||++... ..++. +....++++++|+..+
T Consensus 252 DVVItaTG~-----~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 252 DIFITATGN-----KDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred CEEEECCCC-----HHHHHHHHHhcCCCCcEEEEEC
Confidence 999998752 23332 3556788898886433
No 335
>PLN02306 hydroxypyruvate reductase
Probab=96.97 E-value=0.0014 Score=71.56 Aligned_cols=117 Identities=17% Similarity=0.151 Sum_probs=72.5
Q ss_pred ceEEEEcCCCCcHHHHHHHH-HCCCcEEEEeCCHHH-HHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004892 309 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la-~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (724)
++|+|||.|.+|..+|..+. .-|.+|..||+.... .+........ .....+... .......++ +.+
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~---~l~~~~~~~--------~~~~~~~~L~ell 234 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQ---FLKANGEQP--------VTWKRASSMEEVL 234 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcc---ccccccccc--------ccccccCCHHHHH
Confidence 68999999999999999986 679999999987642 1110000000 000000000 011122345 557
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHhcccC
Q 004892 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS 436 (724)
Q Consensus 386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~ 436 (724)
+.||+|+.++|-+.+...-+=++..+.++++++|+...-+ +.-..+.+.+.
T Consensus 235 ~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~ 287 (386)
T PLN02306 235 READVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLK 287 (386)
T ss_pred hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 9999999999987776665556777889999988743333 33334545543
No 336
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=96.94 E-value=0.0044 Score=68.78 Aligned_cols=99 Identities=20% Similarity=0.252 Sum_probs=64.6
Q ss_pred ceEEEEcCCCC-cHHHHHHHHHC-----CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc
Q 004892 309 RKVAVIGGGLM-GSGIATAHILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (724)
Q Consensus 309 ~kI~VIG~G~m-G~~iA~~la~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (724)
+||+|||+|.. +..+...+++. +-+|+++|+++++++....-.+ +..+....+ -++..|+|.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~----~~~~~~g~~--------~~v~~Ttdr 68 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVK----ILFKENYPE--------IKFVYTTDP 68 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHH----HHHHhhCCC--------eEEEEECCH
Confidence 48999999874 22344445433 4589999999999877433222 223221111 257778887
Q ss_pred -cCcCCCCEEEEcccC----------------------------------ChHHHHHHHHHHHhhCCCCcEEE
Q 004892 383 -SEFKDVDMVIEAVIE----------------------------------SVPLKQKIFSELEKACPPHCILA 420 (724)
Q Consensus 383 -~~~~~aDlVIeav~e----------------------------------~~~~k~~v~~~l~~~~~~~~ii~ 420 (724)
+++++||+||.++-- +..+..++.+++++++ |+++++
T Consensus 69 ~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~-pda~li 140 (437)
T cd05298 69 EEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYS-PDAWIL 140 (437)
T ss_pred HHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHC-CCeEEE
Confidence 889999999987621 2235667788888887 455554
No 337
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.93 E-value=0.007 Score=61.79 Aligned_cols=76 Identities=14% Similarity=0.060 Sum_probs=52.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC---Cc-EEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNN---IY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G---~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (724)
.||+|||+|.||..++..+.+.+ ++ +.+++++++..+... +.....+++++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~-------------------------~~~~~~~~l~~ 57 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALA-------------------------GRVALLDGLPG 57 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhh-------------------------ccCcccCCHHH
Confidence 68999999999999999987643 44 445788776544421 11223445544
Q ss_pred --cCCCCEEEEcccCChHHHHHHHHHHHh
Q 004892 385 --FKDVDMVIEAVIESVPLKQKIFSELEK 411 (724)
Q Consensus 385 --~~~aDlVIeav~e~~~~k~~v~~~l~~ 411 (724)
...+|+|+||.. .+..++.-..+..
T Consensus 58 ll~~~~DlVVE~A~--~~av~e~~~~iL~ 84 (267)
T PRK13301 58 LLAWRPDLVVEAAG--QQAIAEHAEGCLT 84 (267)
T ss_pred HhhcCCCEEEECCC--HHHHHHHHHHHHh
Confidence 378999999998 7776666665544
No 338
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.88 E-value=0.0016 Score=65.28 Aligned_cols=32 Identities=31% Similarity=0.463 Sum_probs=30.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 340 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 340 (724)
.+|.|||+|.+|+.+|..|++.|. +++++|.+
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 579999999999999999999998 59999988
No 339
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=96.87 E-value=0.064 Score=55.74 Aligned_cols=140 Identities=17% Similarity=0.163 Sum_probs=89.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004892 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (724)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa 104 (724)
.-++....-+.+..+++.+... .+-+|+++..|+ +-+++=.. . ...+.+.. ..+.+....-..|.|++
T Consensus 146 gGSmG~v~geKi~ra~e~A~~~-rlPlV~l~~SGG-----ARmQEg~~----s-L~qmak~s-aa~~~~~~~~~vP~Isv 213 (296)
T CHL00174 146 GGSMGSVVGEKITRLIEYATNE-SLPLIIVCASGG-----ARMQEGSL----S-LMQMAKIS-SALYDYQSNKKLFYISI 213 (296)
T ss_pred ccCcCHHHHHHHHHHHHHHHHc-CCCEEEEECCCC-----ccccccch----h-hhhhHHHH-HHHHHHHHcCCCCEEEE
Confidence 4788999999999999988765 456777764433 22221000 0 11111111 11212122467999999
Q ss_pred ECccccchhHHH-HhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCC-----CCHHHHHHCC
Q 004892 105 VEGLALGGGLEL-AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKS-----ITSEEGWKLG 178 (724)
Q Consensus 105 v~G~a~GgG~~l-alacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~-----i~a~eA~~~G 178 (724)
+.|+|.||+... ++.||++|+.+++.+++.-.. . ... .+|+. -+|+-.++.|
T Consensus 214 l~gPt~GG~aas~a~l~Diiiae~~A~IgfAGPr---------------V-----Ie~--t~ge~lpe~fq~ae~l~~~G 271 (296)
T CHL00174 214 LTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKR---------------V-----IEQ--TLNKTVPEGSQAAEYLFDKG 271 (296)
T ss_pred EcCCCchHHHHHHHHcccEEEEeCCeEEEeeCHH---------------H-----HHH--hcCCcCCcccccHHHHHhCc
Confidence 999999998755 667999999888877653221 1 000 11222 2577788999
Q ss_pred CcceecCcchHHHHHHHHHH
Q 004892 179 LIDAVVTSEELLKVSRLWAL 198 (724)
Q Consensus 179 lv~~vv~~~~l~~~a~~~a~ 198 (724)
+||.||+..++.+....+..
T Consensus 272 ~vD~iV~r~~lr~~l~~ll~ 291 (296)
T CHL00174 272 LFDLIVPRNLLKGVLSELFQ 291 (296)
T ss_pred CceEEEcHHHHHHHHHHHHH
Confidence 99999999998877666553
No 340
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.83 E-value=0.016 Score=68.43 Aligned_cols=102 Identities=8% Similarity=0.046 Sum_probs=78.7
Q ss_pred EEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCC--HHHHhcccCC-CCCEEEEecCCCCC------------CCCe
Q 004892 391 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSS-QDRIIGAHFFSPAH------------VMPL 455 (724)
Q Consensus 391 VIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~~-~~r~ig~h~~~p~~------------~~~l 455 (724)
||.|+| +....++++++.++++++++|++.+|+.. +..+...+.. ..+|+|.||..... .+..
T Consensus 1 vila~P--v~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAP--VAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcC--HHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCe
Confidence 688999 99999999999999999999987777643 3444444432 35799999975552 4456
Q ss_pred eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc-CCCchhh
Q 004892 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVG-NCTGFAV 494 (724)
Q Consensus 456 veii~~~~t~~e~~~~~~~l~~~lGk~~v~v~-d~pG~i~ 494 (724)
+.+++.+.++++.++.++++++.+|.+++.+. +.+-.++
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~ 118 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVF 118 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHH
Confidence 77889999999999999999999999998883 3444333
No 341
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.83 E-value=0.0024 Score=67.02 Aligned_cols=72 Identities=15% Similarity=0.192 Sum_probs=51.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (724)
++|.|||+|.+|++++..|+..|. +|+++||+.++++...+.+.... .. ..+....+. +.++
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~------~~----------~~~~~~~~~~~~~~ 191 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF------PA----------ARATAGSDLAAALA 191 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC------CC----------eEEEeccchHhhhC
Confidence 689999999999999999999998 79999999998877654432210 00 001111222 3567
Q ss_pred CCCEEEEccc
Q 004892 387 DVDMVIEAVI 396 (724)
Q Consensus 387 ~aDlVIeav~ 396 (724)
++|+||.|+|
T Consensus 192 ~aDiVInaTp 201 (284)
T PRK12549 192 AADGLVHATP 201 (284)
T ss_pred CCCEEEECCc
Confidence 8999999987
No 342
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.82 E-value=0.014 Score=60.74 Aligned_cols=158 Identities=15% Similarity=0.103 Sum_probs=90.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-CCCcEEEE-eCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc-
Q 004892 309 RKVAVIGGGLMGSGIATAHIL-NNIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF- 385 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~-~G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~- 385 (724)
-||++||+|.||+.|+...++ .|++|+.+ |++.+.+.++.++....-...++....+.-...-..+++..|+|.+.+
T Consensus 18 iRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i~ 97 (438)
T COG4091 18 IRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELII 97 (438)
T ss_pred eEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhhh
Confidence 379999999999999987764 59987664 899888777765421111111111111211122223566677776543
Q ss_pred --CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC-----CCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeE
Q 004892 386 --KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-----TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEI 458 (724)
Q Consensus 386 --~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts-----~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lvei 458 (724)
...|+||++.--..--.+-.+..+ .....++..|.- +..+.+.+... |+- .
T Consensus 98 ~~~~IdvIIdATG~p~vGA~~~l~Ai---~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~-------Gvi------------y 155 (438)
T COG4091 98 ANDLIDVIIDATGVPEVGAKIALEAI---LHGKHLVMMNVEADVTIGPILKQQADAA-------GVI------------Y 155 (438)
T ss_pred cCCcceEEEEcCCCcchhhHhHHHHH---hcCCeEEEEEeeeceeecHHHHHHHhhc-------CeE------------E
Confidence 456889998742222222333333 334455654432 22222222221 222 2
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004892 459 VRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (724)
Q Consensus 459 i~~~~t~~e~~~~~~~l~~~lGk~~v~v~d 488 (724)
..+....|...-.+.+|.+++|..++.++-
T Consensus 156 S~~~GDeP~~~mEL~efa~a~G~evv~aGK 185 (438)
T COG4091 156 SGGAGDEPSSCMELYEFASALGFEVVSAGK 185 (438)
T ss_pred eccCCCCcHHHHHHHHHHHhcCCeEEeccC
Confidence 234455788888899999999999999853
No 343
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.80 E-value=0.0019 Score=69.16 Aligned_cols=101 Identities=18% Similarity=0.196 Sum_probs=64.0
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCC-------CcEEEEeCCHHH--HHHHHHHHHHHHHhhHhcCCCCHHHHH-HhhcCcc
Q 004892 309 RKVAVIGG-GLMGSGIATAHILNN-------IYVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKAN-NALKMLK 377 (724)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~la~~G-------~~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~~i~ 377 (724)
-||+|+|+ |.+|+.++..|+..+ .+|+++|+++.. ++...-++. +.. .....+.
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~---------------d~~~~~~~~~~ 67 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQ---------------DCAFPLLKSVV 67 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehh---------------hccccccCCce
Confidence 37999999 999999999998854 589999997531 221000000 000 0112333
Q ss_pred cccC-ccCcCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004892 378 GVLD-YSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS 424 (724)
Q Consensus 378 ~~~~-~~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (724)
...+ ++++++||+||.+.-- |..+.+++..++.++++++++++..|.
T Consensus 68 ~~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 68 ATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred ecCCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 3455 4889999999977621 233446677788888777776655443
No 344
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=96.77 E-value=0.086 Score=55.15 Aligned_cols=96 Identities=19% Similarity=0.282 Sum_probs=62.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCC----CceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCc
Q 004892 25 VNALAIPIVAGLKDKFEEATSRD----DVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKP 100 (724)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~----~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 100 (724)
--++.....+.+..+++.+..+. .+-+|.|.-.|+ +-+.+-.. . ...+.+ .+..+ ..+... +|
T Consensus 81 GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGG-----aRlqEg~~----~-L~~~a~-i~~~~-~~ls~~-VP 147 (301)
T PRK07189 81 GGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGG-----VRLQEANA----G-LAAIAE-IMRAI-VDLRAA-VP 147 (301)
T ss_pred CcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCC-----cCccchHH----H-HHHHHH-HHHHH-HHHhCC-CC
Confidence 36888888899999998887654 255666643332 22321100 0 000111 11222 224444 99
Q ss_pred EEEEECcc--ccchhHHHHhhcCEEEEeCCceeeC
Q 004892 101 IVAAVEGL--ALGGGLELAMGCHARIAAPKTQLGL 133 (724)
Q Consensus 101 ~Iaav~G~--a~GgG~~lalacD~ria~~~a~f~~ 133 (724)
+|+++.|. |+||+...+.+||++||++++++++
T Consensus 148 ~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igl 182 (301)
T PRK07189 148 VIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGL 182 (301)
T ss_pred EEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEec
Confidence 99999999 9999999999999999999888776
No 345
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=96.76 E-value=0.0039 Score=65.85 Aligned_cols=98 Identities=12% Similarity=0.048 Sum_probs=70.2
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCcEEEE-eCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc
Q 004892 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (724)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 385 (724)
.-++|+|+|+|.+|..+|+.|...| .++.| .|++...+...+. + ....+..+-+
T Consensus 161 ~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~~r~~~~~~~~~~~-----------~-------------~~~~d~~~~~ 215 (336)
T KOG0069|consen 161 EGKTVGILGLGRIGKAIAKRLKPFG-CVILYHSRTQLPPEEAYEY-----------Y-------------AEFVDIEELL 215 (336)
T ss_pred cCCEEEEecCcHHHHHHHHhhhhcc-ceeeeecccCCchhhHHHh-----------c-------------ccccCHHHHH
Confidence 4478999999999999999999999 55555 5555443332110 0 0012223567
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH
Q 004892 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (724)
Q Consensus 386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~ 429 (724)
+++|+|+.|.|-+.+...-+=+++...++++.+|+...-+-.+.
T Consensus 216 ~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iid 259 (336)
T KOG0069|consen 216 ANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIID 259 (336)
T ss_pred hhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEecccccccc
Confidence 89999999999888887777788999999999887555454443
No 346
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.76 E-value=0.0086 Score=60.65 Aligned_cols=92 Identities=21% Similarity=0.240 Sum_probs=59.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-----c
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-----S 383 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-----~ 383 (724)
++|.|||+|.+|.++|..|.+.||+|+++|++++.+++.... .+...+-.| . .++. .
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~---~~~~~~v~g--------------d-~t~~~~L~~a 62 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD---ELDTHVVIG--------------D-ATDEDVLEEA 62 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh---hcceEEEEe--------------c-CCCHHHHHhc
Confidence 479999999999999999999999999999999987763220 000000001 0 1111 2
Q ss_pred CcCCCCEEEEcccCChHHHHHHHHHHHhh-CCCCcEEE
Q 004892 384 EFKDVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILA 420 (724)
Q Consensus 384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~-~~~~~ii~ 420 (724)
.+.++|.+|-+..+|.. ..++..+... +....+++
T Consensus 63 gi~~aD~vva~t~~d~~--N~i~~~la~~~~gv~~via 98 (225)
T COG0569 63 GIDDADAVVAATGNDEV--NSVLALLALKEFGVPRVIA 98 (225)
T ss_pred CCCcCCEEEEeeCCCHH--HHHHHHHHHHhcCCCcEEE
Confidence 37899999999875543 3444444322 34444554
No 347
>PRK05086 malate dehydrogenase; Provisional
Probab=96.75 E-value=0.003 Score=67.25 Aligned_cols=95 Identities=18% Similarity=0.257 Sum_probs=59.0
Q ss_pred ceEEEEcC-CCCcHHHHHHHHH---CCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccc--ccC-
Q 004892 309 RKVAVIGG-GLMGSGIATAHIL---NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG--VLD- 381 (724)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~la~---~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~~- 381 (724)
+||+|||+ |.+|..++..+.. .+++++++|+++.....+. .+. ... ....+.. .++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~al-Dl~-------~~~---------~~~~i~~~~~~d~ 63 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAV-DLS-------HIP---------TAVKIKGFSGEDP 63 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceeh-hhh-------cCC---------CCceEEEeCCCCH
Confidence 48999999 9999999998855 2568999999854210000 000 000 0012222 345
Q ss_pred ccCcCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEEe
Q 004892 382 YSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILAT 421 (724)
Q Consensus 382 ~~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~s 421 (724)
++++++||+||.|.-. |..+.+++.+.+.++. ++.+++.
T Consensus 64 ~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~-~~~iviv 116 (312)
T PRK05086 64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTC-PKACIGI 116 (312)
T ss_pred HHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEE
Confidence 4789999999999832 2235566677777774 4555543
No 348
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=96.74 E-value=0.0032 Score=65.81 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=36.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 349 (724)
++|.|+|+|.+|.+++..|+..|++|++++|++++++...+
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~ 158 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAE 158 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 67999999999999999999999999999999988766544
No 349
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.73 E-value=0.0076 Score=54.72 Aligned_cols=100 Identities=21% Similarity=0.206 Sum_probs=58.7
Q ss_pred eEEEEcC-CCCcHHHHHHHHHC-CCcEEEE-eCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccc-cCccCc
Q 004892 310 KVAVIGG-GLMGSGIATAHILN-NIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDYSEF 385 (724)
Q Consensus 310 kI~VIG~-G~mG~~iA~~la~~-G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~ 385 (724)
||+|||+ |.+|..++..+... +++++.+ +++.+..+.... ..+.+... ...... .+++ .
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~----------~~~~~~~~------~~~~~~~~~~~-~ 63 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSE----------AGPHLKGE------VVLELEPEDFE-E 63 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHH----------HCcccccc------cccccccCChh-h
Confidence 6899995 99999999999884 8887766 554322211110 00101000 000011 1112 2
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH
Q 004892 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 428 (724)
Q Consensus 386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~ 428 (724)
.++|+||.|+|.+. ..++...+...+.+++++++.++++..
T Consensus 64 ~~~DvV~~~~~~~~--~~~~~~~~~~~~~~g~~viD~s~~~~~ 104 (122)
T smart00859 64 LAVDIVFLALPHGV--SKEIAPLLPKAAEAGVKVIDLSSAFRM 104 (122)
T ss_pred cCCCEEEEcCCcHH--HHHHHHHHHhhhcCCCEEEECCccccC
Confidence 58999999999553 334444444556789999988887764
No 350
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.71 E-value=0.0033 Score=69.58 Aligned_cols=88 Identities=24% Similarity=0.304 Sum_probs=61.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (724)
++|+|||.|.+|..+|..+...|.+|+++++++.....+.. .| .. ..++ +.++.
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~-----------~G-------------~~-~~~leell~~ 309 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM-----------EG-------------YQ-VVTLEDVVET 309 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh-----------cC-------------ce-eccHHHHHhc
Confidence 68999999999999999999999999999999876433211 11 01 1122 45788
Q ss_pred CCEEEEcccCChHHHHHHH-HHHHhhCCCCcEEEecCCCCC
Q 004892 388 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTID 427 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~-~~l~~~~~~~~ii~s~ts~~~ 427 (724)
+|+||.+.. . +.++ .+..+.++++++|+ |++...
T Consensus 310 ADIVI~atG-t----~~iI~~e~~~~MKpGAiLI-NvGr~d 344 (476)
T PTZ00075 310 ADIFVTATG-N----KDIITLEHMRRMKNNAIVG-NIGHFD 344 (476)
T ss_pred CCEEEECCC-c----ccccCHHHHhccCCCcEEE-EcCCCc
Confidence 999999864 2 2333 34556678998886 444433
No 351
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.69 E-value=0.005 Score=66.11 Aligned_cols=93 Identities=15% Similarity=0.163 Sum_probs=62.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-CCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004892 309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (724)
++|+|||+|.+|...+..++. .+. +|.+|+|++++.++..+++.... + -.+...++. +.+
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~------~-----------~~~~~~~~~~~~~ 190 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF------N-----------TEIYVVNSADEAI 190 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHHHH
Confidence 579999999999998877754 454 89999999998877655443210 1 012223444 567
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 004892 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (724)
Q Consensus 386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (724)
+++|+||.|.|... .++. ..+++++.|.+..|.
T Consensus 191 ~~aDiVi~aT~s~~----p~i~---~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 191 EEADIIVTVTNAKT----PVFS---EKLKKGVHINAVGSF 223 (325)
T ss_pred hcCCEEEEccCCCC----cchH---HhcCCCcEEEecCCC
Confidence 89999999998442 3333 346788877655443
No 352
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.69 E-value=0.0041 Score=61.51 Aligned_cols=41 Identities=27% Similarity=0.303 Sum_probs=36.4
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 004892 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (724)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 349 (724)
++|.|+|+ |.+|..++..|++.|++|++++|+.++++...+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~ 70 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAAD 70 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 68999996 999999999999999999999999888766544
No 353
>PRK07340 ornithine cyclodeaminase; Validated
Probab=96.66 E-value=0.0055 Score=65.08 Aligned_cols=91 Identities=18% Similarity=0.168 Sum_probs=61.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-CCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004892 309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (724)
++|+|||+|.+|...+..+.. .+. +|.+|+|++++.++..++++. .+ + .+. .++. +++
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~-------~~-~----------~~~-~~~~~~av 186 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARA-------LG-P----------TAE-PLDGEAIP 186 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh-------cC-C----------eeE-ECCHHHHh
Confidence 579999999999999999975 454 799999999988776554321 01 0 111 2333 568
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 004892 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (724)
Q Consensus 386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (724)
.++|+||.|.|....+ +.. .+++++.|....+.
T Consensus 187 ~~aDiVitaT~s~~Pl----~~~---~~~~g~hi~~iGs~ 219 (304)
T PRK07340 187 EAVDLVVTATTSRTPV----YPE---AARAGRLVVAVGAF 219 (304)
T ss_pred hcCCEEEEccCCCCce----eCc---cCCCCCEEEecCCC
Confidence 8999999999854433 322 25677766554443
No 354
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=96.65 E-value=0.029 Score=56.01 Aligned_cols=142 Identities=18% Similarity=0.226 Sum_probs=91.4
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceE--EEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEE
Q 004892 28 LAIPIVAGLKDKFEEATSRDDVKA--IVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (724)
Q Consensus 28 l~~~~~~~l~~~l~~~~~d~~v~~--vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav 105 (724)
++.++.+.+...+-.++.++..+- +-|.+.|+...+|-=+.. ......++ +.|...+-||...+
T Consensus 49 ~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~-------------v~~glaIy-D~m~~ik~~V~Tv~ 114 (222)
T PRK12552 49 VGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGF-------------ETEAFAIC-DTMRYIKPPVHTIC 114 (222)
T ss_pred hhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccc-------------cccHHHHH-HHHHhcCCCeEEEE
Confidence 444488888888877765443222 233455555444411100 01123455 66888888999999
Q ss_pred CccccchhHHHHhhcCE--EEEeCCceeeCcccccCccCCcchhhhh------------------ccccc--HHHHHHHH
Q 004892 106 EGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQRL------------------PRLVG--LSKAIEMM 163 (724)
Q Consensus 106 ~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~~P~~g~~~~l------------------~r~~G--~~~a~~l~ 163 (724)
-|.|.+.+.-|++++|- |++.++|++-+....-|.. |-+.-+ ...-| .....+++
T Consensus 115 ~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~---G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d~ 191 (222)
T PRK12552 115 IGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR---GQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKDT 191 (222)
T ss_pred EeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHh
Confidence 99999999999999995 9999999998877654431 211111 11111 23333444
Q ss_pred HcCCCCCHHHHHHCCCcceecCc
Q 004892 164 LLSKSITSEEGWKLGLIDAVVTS 186 (724)
Q Consensus 164 ltg~~i~a~eA~~~Glv~~vv~~ 186 (724)
-....++|+||++.||||+|+.+
T Consensus 192 ~rd~wmsA~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 192 DRMFYLTPQEAKEYGLIDRVLES 214 (222)
T ss_pred cCCCcCCHHHHHHcCCCcEEecc
Confidence 55677899999999999999854
No 355
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.64 E-value=0.0046 Score=59.42 Aligned_cols=76 Identities=22% Similarity=0.224 Sum_probs=54.8
Q ss_pred ceEEEEcCCCC-cHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004892 309 RKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~m-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (724)
++|.|||+|-| |..+|..|.+.|.+|++.+++.+.+. +.+.+
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~-------------------------------------~~l~~ 87 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLK-------------------------------------EHTKQ 87 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHH-------------------------------------HHHhh
Confidence 78999999987 88899999999999999999854322 24678
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 428 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~ 428 (724)
||+||.|++...-+..+ .++++.+|++....-.+
T Consensus 88 aDiVIsat~~~~ii~~~-------~~~~~~viIDla~prdv 121 (168)
T cd01080 88 ADIVIVAVGKPGLVKGD-------MVKPGAVVIDVGINRVP 121 (168)
T ss_pred CCEEEEcCCCCceecHH-------HccCCeEEEEccCCCcc
Confidence 99999999743222222 24556777765544433
No 356
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.63 E-value=0.0084 Score=58.87 Aligned_cols=91 Identities=19% Similarity=0.226 Sum_probs=61.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHC--CC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004892 310 KVAVIGGGLMGSGIATAHILN--NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (724)
Q Consensus 310 kI~VIG~G~mG~~iA~~la~~--G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (724)
||++||+|.+|..+...+... .+ -|.+||++.+++..+.+.. . ....+++ +.+
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~----------------------~-~~~~s~ide~~ 58 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASV----------------------G-RRCVSDIDELI 58 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhc----------------------C-CCccccHHHHh
Confidence 799999999999999876644 24 4888999999876543211 1 1122555 345
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCC
Q 004892 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427 (724)
Q Consensus 386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~ 427 (724)
++.|+|+||.. .+..++...++.+. .-++||+| ++.+.
T Consensus 59 ~~~DlvVEaAS--~~Av~e~~~~~L~~-g~d~iV~S-VGALa 96 (255)
T COG1712 59 AEVDLVVEAAS--PEAVREYVPKILKA-GIDVIVMS-VGALA 96 (255)
T ss_pred hccceeeeeCC--HHHHHHHhHHHHhc-CCCEEEEe-chhcc
Confidence 89999999997 67666766665442 34556654 44444
No 357
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.61 E-value=0.0028 Score=70.42 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=35.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC-CcEEEEeCCHHHHHHH
Q 004892 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKG 347 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~ 347 (724)
++|+|||+|.||..++..|...| .+|++++++.++++..
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~l 220 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDL 220 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 68999999999999999999999 6899999999876543
No 358
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.029 Score=60.78 Aligned_cols=147 Identities=21% Similarity=0.248 Sum_probs=102.9
Q ss_pred cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE-EcCCCCccCCCCchhhhhccCCCcccccchhHHHHH
Q 004892 12 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (724)
Q Consensus 12 ~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl-~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (724)
+..|..+.++. .+++...+.+.+.++.++++.. -+||| --.++.+ .+...+++
T Consensus 25 ~~~v~vi~i~g----~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldTPGGl---------------------~~sm~~iv 78 (436)
T COG1030 25 EKKVYVIEIDG----AIDPASADYLQRALQSAEEENA-AAVVLELDTPGGL---------------------LDSMRQIV 78 (436)
T ss_pred CCeEEEEEecC----ccCHHHHHHHHHHHHHHHhCCC-cEEEEEecCCCch---------------------HHHHHHHH
Confidence 34577777755 5999999999999999997752 34444 2223211 12233556
Q ss_pred HHHHhcCCCcEEEEEC---ccccchhHHHHhhcCEEEEeCCceeeCcccccCc--cCC-cc-hhhhhc------ccc--c
Q 004892 91 VNLIEDCKKPIVAAVE---GLALGGGLELAMGCHARIAAPKTQLGLPELTLGV--IPG-FG-GTQRLP------RLV--G 155 (724)
Q Consensus 91 ~~~l~~~~kp~Iaav~---G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~--~P~-~g-~~~~l~------r~~--G 155 (724)
+.|.+.|.|++..|. +.|..+|.-++++||+..|.+.+.+|-...-.+- .+. .. -...+. +.- -
T Consensus 79 -~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN 157 (436)
T COG1030 79 -RAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRN 157 (436)
T ss_pred -HHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCC
Confidence 779999999888883 4699999999999999999999998865543322 111 11 111111 111 2
Q ss_pred HHHHHHHHHcCCCCCHHHHHHCCCcceecC
Q 004892 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (724)
Q Consensus 156 ~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~ 185 (724)
...|.+|+.....++++||++.|++|-+..
T Consensus 158 ~~~ae~~v~~~~~l~a~eA~~~~vid~iA~ 187 (436)
T COG1030 158 PTWAERFVTENLSLTAEEALRQGVIDLIAR 187 (436)
T ss_pred hHHHHHHhhhccCCChhHHHhcCccccccC
Confidence 367888999999999999999999998864
No 359
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=96.59 E-value=0.016 Score=61.33 Aligned_cols=124 Identities=18% Similarity=0.153 Sum_probs=74.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CCcEEE-EeCCH-HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cC
Q 004892 309 RKVAVIGGGLMGSGIATAHILN-NIYVVL-KEVNS-EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~-G~~V~l-~d~~~-~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (724)
-||+|||+|.||...+..+.+. +++++. +|+++ +.+.. ..+ +..+.+. +.
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~-------------~~~-------------v~~~~d~~e~ 57 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT-------------ETP-------------VYAVADDEKH 57 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh-------------cCC-------------ccccCCHHHh
Confidence 5899999999999999998765 788765 79985 32211 001 1112222 44
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCC
Q 004892 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 464 (724)
Q Consensus 385 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t 464 (724)
+.++|+|+.|.|..... +. +.+.+..+.=+++.. +++. .
T Consensus 58 l~~iDVViIctPs~th~--~~---~~~~L~aG~NVV~s~-------------------------~~h~-----------~ 96 (324)
T TIGR01921 58 LDDVDVLILCMGSATDI--PE---QAPYFAQFANTVDSF-------------------------DNHR-----------D 96 (324)
T ss_pred ccCCCEEEEcCCCccCH--HH---HHHHHHcCCCEEECC-------------------------Cccc-----------C
Confidence 57899999999855442 22 222222322122210 0111 1
Q ss_pred CHHHHHHHHHHHHHcCCeeEE-EcCCCchhh-hhhhh
Q 004892 465 SAQVILDLMTVGKIIKKVPVV-VGNCTGFAV-NRAFF 499 (724)
Q Consensus 465 ~~e~~~~~~~l~~~lGk~~v~-v~d~pG~i~-nRl~~ 499 (724)
.++..+.+...++.-|+..++ .+--|||.. ||++.
T Consensus 97 ~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~~~ 133 (324)
T TIGR01921 97 IPRHRQVMDAAAKAAGNVSVISTGWDPGMFSINRVYG 133 (324)
T ss_pred CHHHHHHHHHHHHHcCCEEEEECCCCcChHHHHHHHH
Confidence 357788888888887766654 488899654 78764
No 360
>PLN02494 adenosylhomocysteinase
Probab=96.59 E-value=0.0039 Score=68.82 Aligned_cols=87 Identities=15% Similarity=0.231 Sum_probs=60.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (724)
++|+|+|.|.+|..+|..+...|.+|+++++++.+...+.. .|. ... ++ +.++.
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~-----------~G~-------------~vv-~leEal~~ 309 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALM-----------EGY-------------QVL-TLEDVVSE 309 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHh-----------cCC-------------eec-cHHHHHhh
Confidence 68999999999999999999999999999999876433211 110 001 12 45678
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (724)
+|+||++... . ..+..+..+.++++++|+....
T Consensus 310 ADVVI~tTGt-~---~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 310 ADIFVTTTGN-K---DIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred CCEEEECCCC-c---cchHHHHHhcCCCCCEEEEcCC
Confidence 9999987642 2 2223555567889998875443
No 361
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=96.58 E-value=0.035 Score=64.22 Aligned_cols=105 Identities=16% Similarity=0.173 Sum_probs=73.2
Q ss_pred cCcEEEEEeCC-C--C---CCCCC----------HHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccC
Q 004892 12 NDGVAIITLIN-P--P---VNALA----------IPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG 75 (724)
Q Consensus 12 ~~~v~~i~l~~-p--~---~Nal~----------~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~ 75 (724)
++.+.+|-++. + + .+.+. ...+.++.++++.+..|+.|++|||.-.+ +.|.++..+.
T Consensus 41 ~~~~L~l~~~gg~i~e~~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~A~~D~~IkgIvL~i~~---~~g~~~~~~~---- 113 (584)
T TIGR00705 41 SSGALLLDLPVGDVTDQSPRVSLQGTLLGNPKGRAISLFDIVNAIRQAADDRRIEGLVFDLSN---FSGWDSPHLV---- 113 (584)
T ss_pred CCeEEEEECCCCcccCcCCCCchhhhhccCCCcCCcCHHHHHHHHHHHhcCCCceEEEEEccC---CCCCCHHHHH----
Confidence 56788888873 3 1 23221 23578999999999999999999997542 1233332221
Q ss_pred CCcccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCc
Q 004892 76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLP 134 (724)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~p 134 (724)
...+.+ ..+....|||||..++.+ -+|.-|+.+||.+++.+.+.+++.
T Consensus 114 ---------ei~~ai-~~fk~sgKpVvA~~~~~~-s~~YylAs~AD~I~~~p~G~v~~~ 161 (584)
T TIGR00705 114 ---------EIGSAL-SEFKDSGKPVYAYGTNYS-QGQYYLASFADEIILNPMGSVDLH 161 (584)
T ss_pred ---------HHHHHH-HHHHhcCCeEEEEEcccc-chhhhhhhhCCEEEECCCceEEee
Confidence 112333 346678899999888765 678999999999999988877553
No 362
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.57 E-value=0.0057 Score=65.67 Aligned_cols=73 Identities=14% Similarity=0.163 Sum_probs=52.6
Q ss_pred ceEEEEcCCCCcHHHHHHHH-HCCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004892 309 RKVAVIGGGLMGSGIATAHI-LNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la-~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (724)
++++|||+|.+|...+..++ ..+. +|++|+|++++.++..+++...+ + + .+...++. +++
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~------g-~----------~v~~~~~~~~av 192 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL------G-I----------DVTAATDPRAAM 192 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc------C-c----------eEEEeCCHHHHh
Confidence 57999999999999999997 4664 69999999999887655432110 1 0 12223444 467
Q ss_pred CCCCEEEEcccCC
Q 004892 386 KDVDMVIEAVIES 398 (724)
Q Consensus 386 ~~aDlVIeav~e~ 398 (724)
.+||+||.|.|..
T Consensus 193 ~~aDiVvtaT~s~ 205 (326)
T TIGR02992 193 SGADIIVTTTPSE 205 (326)
T ss_pred ccCCEEEEecCCC
Confidence 8999999999743
No 363
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.53 E-value=0.0055 Score=64.30 Aligned_cols=70 Identities=17% Similarity=0.205 Sum_probs=51.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccC-ccCcC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD-YSEFK 386 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~ 386 (724)
++|.|+|+|.+|.+++..|+..| .+|++++|+.++++...+.+.. .+ .+....+ .+.+.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~-------~~------------~~~~~~~~~~~~~ 184 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGA-------LG------------KAELDLELQEELA 184 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh-------cc------------ceeecccchhccc
Confidence 68999999999999999999999 6999999999887765443221 00 0111111 24567
Q ss_pred CCCEEEEcccC
Q 004892 387 DVDMVIEAVIE 397 (724)
Q Consensus 387 ~aDlVIeav~e 397 (724)
++|+||.|+|-
T Consensus 185 ~~DivInaTp~ 195 (278)
T PRK00258 185 DFDLIINATSA 195 (278)
T ss_pred cCCEEEECCcC
Confidence 89999999983
No 364
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=96.53 E-value=0.021 Score=55.75 Aligned_cols=142 Identities=23% Similarity=0.274 Sum_probs=85.8
Q ss_pred EEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004892 18 ITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (724)
Q Consensus 18 i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (724)
|.|..| ++..+...+...+-.++.++..+-|.| -+-|+...+| ..++ +.|.
T Consensus 30 I~l~g~----I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG----------------------~AIy-dtm~ 82 (200)
T COG0740 30 IFLGGE----IEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAG----------------------LAIY-DTMQ 82 (200)
T ss_pred EEEeee----echHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchh----------------------HHHH-HHHH
Confidence 445444 444455555555555555444443333 4444433333 2455 6688
Q ss_pred cCCCcEEEEECccccchhHHHHhhcCEE--EEeCCceeeCcccccCccCCcchhhh-------------h----ccccc-
Q 004892 96 DCKKPIVAAVEGLALGGGLELAMGCHAR--IAAPKTQLGLPELTLGVIPGFGGTQR-------------L----PRLVG- 155 (724)
Q Consensus 96 ~~~kp~Iaav~G~a~GgG~~lalacD~r--ia~~~a~f~~pe~~~G~~P~~g~~~~-------------l----~r~~G- 155 (724)
..+.||...+-|.|..-|.-|++|+|.. ++.++|++-.-... |.+-|.. +-. + ...-|
T Consensus 83 ~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~G~a-~Di~i~A~ei~~~~~~l~~i~a~~TGq 160 (200)
T COG0740 83 FIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQGQA-SDIEIHAREILKIKERLNRIYAEHTGQ 160 (200)
T ss_pred hcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCccCH-HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8999999999999999999999999985 77777777654443 2221111 100 0 00011
Q ss_pred -HHHHHHHHHcCCCCCHHHHHHCCCcceecCcch
Q 004892 156 -LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188 (724)
Q Consensus 156 -~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~ 188 (724)
..+-...+-....++|+||+++||||+|....+
T Consensus 161 ~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~ 194 (200)
T COG0740 161 TLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESRE 194 (200)
T ss_pred CHHHHHHhhcccccCCHHHHHHcCCcceeccccc
Confidence 122223334566789999999999999986543
No 365
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=96.52 E-value=0.065 Score=54.12 Aligned_cols=113 Identities=15% Similarity=0.129 Sum_probs=76.9
Q ss_pred ccCccCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccC----CCCCEEEEecCCCCCCCC
Q 004892 379 VLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS----SQDRIIGAHFFSPAHVMP 454 (724)
Q Consensus 379 ~~~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~----~~~r~ig~h~~~p~~~~~ 454 (724)
++|.|+++++|++|.=.|..- ....+++++.+.+++++|| +||.++|...+...+. ..-.+..+||-.=| -++
T Consensus 133 sDD~EAvk~aei~I~ftPfG~-~t~~Iikki~~~ipEgAII-~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaaVP-gt~ 209 (342)
T PRK00961 133 TDDREAVADADIVITWLPKGG-MQPDIIEKFADDIKEGAIV-THACTIPTTKFAKIFKDLGRDDLNVTSYHPGAVP-EMK 209 (342)
T ss_pred cCcHHHhcCCCEEEEecCCCC-CchHHHHHHHhhCCCCCEE-eccccCCHHHHHHHHHHhCcccCCeeccCCCCCC-CCC
Confidence 455699999999999998433 1247788888999999987 6788888776655443 22346666764322 222
Q ss_pred eeeEecCCCCCHHHHHHHHHHHHHcCCeeEEE-cCCCchhh
Q 004892 455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVV-GNCTGFAV 494 (724)
Q Consensus 455 lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v-~d~pG~i~ 494 (724)
.-..+.-...++|.++++.++.+..|+.+.++ .+.-+-+.
T Consensus 210 Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~PA~lvspV~ 250 (342)
T PRK00961 210 GQVYIAEGYADEEAVEKLYEIGKKARGNAFKMPANLIGPVC 250 (342)
T ss_pred CceecccccCCHHHHHHHHHHHHHhCCCeeecchhhcchhh
Confidence 22223334568999999999999999999987 34333333
No 366
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.47 E-value=0.0028 Score=57.53 Aligned_cols=99 Identities=18% Similarity=0.164 Sum_probs=61.5
Q ss_pred eEEEEc-CCCCcHHHHHHHHHCC-Cc-EEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccccc-CccCc
Q 004892 310 KVAVIG-GGLMGSGIATAHILNN-IY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DYSEF 385 (724)
Q Consensus 310 kI~VIG-~G~mG~~iA~~la~~G-~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~ 385 (724)
||+||| .|.+|..+...|.++= ++ +.++.++.+.-..... ... ...+ ...+...+ +.+.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~----~~~--~~~~----------~~~~~~~~~~~~~~ 64 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSE----VFP--HPKG----------FEDLSVEDADPEEL 64 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHH----TTG--GGTT----------TEEEBEEETSGHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeeh----hcc--cccc----------ccceeEeecchhHh
Confidence 799999 7999999999999852 34 5556666522111110 000 0000 01223322 44667
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH
Q 004892 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (724)
Q Consensus 386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~ 429 (724)
.++|+||.|+| ....+++..++ +..++.|+++++.+...
T Consensus 65 ~~~Dvvf~a~~--~~~~~~~~~~~---~~~g~~ViD~s~~~R~~ 103 (121)
T PF01118_consen 65 SDVDVVFLALP--HGASKELAPKL---LKAGIKVIDLSGDFRLD 103 (121)
T ss_dssp TTESEEEE-SC--HHHHHHHHHHH---HHTTSEEEESSSTTTTS
T ss_pred hcCCEEEecCc--hhHHHHHHHHH---hhCCcEEEeCCHHHhCC
Confidence 99999999998 66666776665 35778888988887554
No 367
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.45 E-value=0.008 Score=64.68 Aligned_cols=73 Identities=16% Similarity=0.138 Sum_probs=52.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-CC-CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004892 309 RKVAVIGGGLMGSGIATAHIL-NN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~-~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (724)
++|+|||+|.+|...+..+.. .+ .+|++|+|+++++++..+++++.+ + + .+...++. +++
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~------g-~----------~v~~~~d~~~al 195 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL------G-I----------PVTVARDVHEAV 195 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc------C-c----------eEEEeCCHHHHH
Confidence 589999999999998888875 44 589999999999887655433211 1 0 12233444 567
Q ss_pred CCCCEEEEcccCC
Q 004892 386 KDVDMVIEAVIES 398 (724)
Q Consensus 386 ~~aDlVIeav~e~ 398 (724)
.+||+||.|.|..
T Consensus 196 ~~aDiVi~aT~s~ 208 (330)
T PRK08291 196 AGADIIVTTTPSE 208 (330)
T ss_pred ccCCEEEEeeCCC
Confidence 8899999998743
No 368
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.44 E-value=0.035 Score=55.18 Aligned_cols=129 Identities=20% Similarity=0.266 Sum_probs=76.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (724)
++|.|||+|.+|...+..|.+.|.+|++++++.. .+.. ..+.+.+. ...-.-..+.+.+
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~-----------l~~~~~i~---------~~~~~~~~~~l~~ 70 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVK-----------LVEEGKIR---------WKQKEFEPSDIVD 70 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHH-----------HHhCCCEE---------EEecCCChhhcCC
Confidence 6899999999999999999999999999986532 1111 11222111 0000111246789
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCC--CCCCeeeEecCCCCC
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTERTS 465 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~--~~~~lveii~~~~t~ 465 (724)
+|+||-|.. +.++...+.... ..+ +++.+....+. ..|..|. ..+++...|.+.+.+
T Consensus 71 adlViaaT~-d~elN~~i~~~a----~~~-~lvn~~d~~~~---------------~~f~~Pa~~~~g~l~iaIsT~G~s 129 (202)
T PRK06718 71 AFLVIAATN-DPRVNEQVKEDL----PEN-ALFNVITDAES---------------GNVVFPSALHRGKLTISVSTDGAS 129 (202)
T ss_pred ceEEEEcCC-CHHHHHHHHHHH----HhC-CcEEECCCCcc---------------CeEEEeeEEEcCCeEEEEECCCCC
Confidence 999998764 556655554433 233 33333222111 1222232 345566667777778
Q ss_pred HHHHHHHHHHHHH
Q 004892 466 AQVILDLMTVGKI 478 (724)
Q Consensus 466 ~e~~~~~~~l~~~ 478 (724)
|.....++.-++.
T Consensus 130 P~la~~lr~~ie~ 142 (202)
T PRK06718 130 PKLAKKIRDELEA 142 (202)
T ss_pred hHHHHHHHHHHHH
Confidence 8877777766664
No 369
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.35 E-value=0.0062 Score=68.77 Aligned_cols=70 Identities=17% Similarity=0.215 Sum_probs=51.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (724)
+++.|+|+|.+|.+++..|+..|++|++++|++++++...+.+. ....+ ..+...+.++
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~--------~~~~~-------------~~~~~~l~~~ 391 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQ--------GKAFP-------------LESLPELHRI 391 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--------cceec-------------hhHhcccCCC
Confidence 57999999999999999999999999999999887665432110 00011 1122336789
Q ss_pred CEEEEcccCCh
Q 004892 389 DMVIEAVIESV 399 (724)
Q Consensus 389 DlVIeav~e~~ 399 (724)
|+||.|+|...
T Consensus 392 DiVInatP~g~ 402 (477)
T PRK09310 392 DIIINCLPPSV 402 (477)
T ss_pred CEEEEcCCCCC
Confidence 99999998554
No 370
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=96.35 E-value=0.025 Score=61.79 Aligned_cols=76 Identities=18% Similarity=0.172 Sum_probs=51.0
Q ss_pred cceEEEEcCCCCcHHHHH--HHHH----CCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccC
Q 004892 308 VRKVAVIGGGLMGSGIAT--AHIL----NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD 381 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~--~la~----~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 381 (724)
..||+|||+|..+.+--. .+.+ .+.++.++|+++++++.. .....+.++.-..+ -++..++|
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i----~~~~~~~v~~~g~~--------~kv~~ttd 70 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKII----AILAKKLVEEAGAP--------VKVEATTD 70 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHH----HHHHHHHHHhhCCC--------eEEEEecC
Confidence 358999999998766432 2222 255899999999997732 23333344332211 34667788
Q ss_pred c-cCcCCCCEEEEcc
Q 004892 382 Y-SEFKDVDMVIEAV 395 (724)
Q Consensus 382 ~-~~~~~aDlVIeav 395 (724)
. +++++||+||.++
T Consensus 71 ~~eAl~gAdfVi~~~ 85 (442)
T COG1486 71 RREALEGADFVITQI 85 (442)
T ss_pred HHHHhcCCCEEEEEE
Confidence 7 7899999999886
No 371
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.33 E-value=0.0059 Score=58.13 Aligned_cols=70 Identities=23% Similarity=0.194 Sum_probs=49.7
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004892 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (724)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (724)
+||+|||+ |..|+-|+.-..+.||+|+.+-||+.++.... .+ ..+++... ..+...+++.+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~-~~-----~i~q~Dif------------d~~~~a~~l~g 62 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQ-GV-----TILQKDIF------------DLTSLASDLAG 62 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccc-cc-----eeeccccc------------ChhhhHhhhcC
Confidence 48999998 99999999999999999999999999865410 00 00111111 11121257889
Q ss_pred CCEEEEccc
Q 004892 388 VDMVIEAVI 396 (724)
Q Consensus 388 aDlVIeav~ 396 (724)
-|+||.+.-
T Consensus 63 ~DaVIsA~~ 71 (211)
T COG2910 63 HDAVISAFG 71 (211)
T ss_pred CceEEEecc
Confidence 999999984
No 372
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.32 E-value=0.0081 Score=63.08 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=36.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHH
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~ 349 (724)
++|.|||+|-+|++++..|+..|. +|++++|++++.+...+
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~ 167 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVD 167 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 579999999999999999999997 69999999988776544
No 373
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.31 E-value=0.0078 Score=65.73 Aligned_cols=39 Identities=26% Similarity=0.358 Sum_probs=35.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 347 (724)
.+|.|||+|.+|...+..+...|.+|+++|+++++++.+
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l 206 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQL 206 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH
Confidence 679999999999999999999999999999999876654
No 374
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=96.30 E-value=0.085 Score=59.93 Aligned_cols=166 Identities=11% Similarity=0.112 Sum_probs=103.9
Q ss_pred EEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHH
Q 004892 16 AIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL 93 (724)
Q Consensus 16 ~~i~l~~p~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (724)
.-|.-|+|. .-++++.-.+...++++.+.+. .+-+|.|.-.++ |..|.+-+. ........+++ .+
T Consensus 317 V~vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs~G-~~~g~~~E~----------~g~~~~~a~~~-~a 383 (512)
T TIGR01117 317 VGIIANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDVPG-FLPGVNQEY----------GGIIRHGAKVL-YA 383 (512)
T ss_pred EEEEEeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCcC-ccccHHHHH----------HHHHHHHHHHH-HH
Confidence 334446664 3579999999999999988754 566777754333 655544221 11222333555 56
Q ss_pred HhcCCCcEEEEECccccchhHHHHh----hcCEEEEeCCceeeCcccccCccCCcchhhhh-cccc----cHHHHHHHH-
Q 004892 94 IEDCKKPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRL-PRLV----GLSKAIEMM- 163 (724)
Q Consensus 94 l~~~~kp~Iaav~G~a~GgG~~lal----acD~ria~~~a~f~~pe~~~G~~P~~g~~~~l-~r~~----G~~~a~~l~- 163 (724)
+....+|.|+.|-|.|.|||..-+. .+|+++|.+++.+++ .+.-+++..+ .+.+ -...++.-.
T Consensus 384 ~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~v-------~~pe~a~~i~~~~~l~~~~~~~~~~~~~~ 456 (512)
T TIGR01117 384 YSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAV-------MGPAGAANIIFRKDIKEAKDPAATRKQKI 456 (512)
T ss_pred HHhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEee-------cCHHHHHHHHhhhhcccccCHHHHHHHHH
Confidence 7889999999999999888643333 289999888887764 3222222222 1111 011111111
Q ss_pred --HcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHH
Q 004892 164 --LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIA 201 (724)
Q Consensus 164 --ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la 201 (724)
..-+.-++..+.+.|+||.|+++.++........+.+.
T Consensus 457 ~~~~~~~~~~~~~a~~g~vD~VI~P~~tR~~l~~~l~~~~ 496 (512)
T TIGR01117 457 AEYREEFANPYKAAARGYVDDVIEPKQTRPKIVNALAMLE 496 (512)
T ss_pred HHHHHhhcCHHHHHhcCCCCeeEChHHHHHHHHHHHHHHh
Confidence 12234578899999999999999998887777766543
No 375
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.26 E-value=0.0077 Score=58.62 Aligned_cols=96 Identities=17% Similarity=0.212 Sum_probs=58.0
Q ss_pred EEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCC
Q 004892 311 VAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (724)
Q Consensus 311 I~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 389 (724)
|.|+|+ |.+|..++..|.+.|++|+++.|++++++. ...+ ..+.....+.+.. .+++++||
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-~~~~-----~~~~~d~~d~~~~------------~~al~~~d 62 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-SPGV-----EIIQGDLFDPDSV------------KAALKGAD 62 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-CTTE-----EEEESCTTCHHHH------------HHHHTTSS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-cccc-----ccceeeehhhhhh------------hhhhhhcc
Confidence 789997 999999999999999999999999987654 0000 0000000010000 14578999
Q ss_pred EEEEcccC---ChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004892 390 MVIEAVIE---SVPLKQKIFSELEKACPPHCILATNTS 424 (724)
Q Consensus 390 lVIeav~e---~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (724)
.||.+++. +....+.+++.+...-.+..+++|..+
T Consensus 63 ~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~~ 100 (183)
T PF13460_consen 63 AVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSSAG 100 (183)
T ss_dssp EEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred hhhhhhhhhcccccccccccccccccccccceeeeccc
Confidence 99999973 334444555555443222334444433
No 376
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.25 E-value=0.012 Score=62.21 Aligned_cols=93 Identities=15% Similarity=0.156 Sum_probs=62.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-C-CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004892 309 RKVAVIGGGLMGSGIATAHILN-N-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (724)
++++|||+|..|...+..++.- . .+|.+|+|++++.++..++++..+ + -.+...++. +++
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~------~-----------~~v~~~~~~~eav 180 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF------G-----------VDIRPVDNAEAAL 180 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHHHH
Confidence 6799999999999998888753 3 379999999999887665543211 1 123334444 678
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004892 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (724)
Q Consensus 386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (724)
++||+|+.|.+.... ++. .+.++|++-|....|
T Consensus 181 ~~aDIV~taT~s~~P----~~~--~~~l~pg~hV~aiGs 213 (301)
T PRK06407 181 RDADTITSITNSDTP----IFN--RKYLGDEYHVNLAGS 213 (301)
T ss_pred hcCCEEEEecCCCCc----Eec--HHHcCCCceEEecCC
Confidence 999999999874432 221 124567766654443
No 377
>PRK10949 protease 4; Provisional
Probab=96.22 E-value=0.045 Score=63.38 Aligned_cols=85 Identities=18% Similarity=0.164 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEECccccc
Q 004892 32 IVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALG 111 (724)
Q Consensus 32 ~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~G 111 (724)
.+.++.++++.+..|+.|++|||.-.+. .|.....+ +...+.+ ..+....||+||. ...+.-
T Consensus 96 ~l~div~~i~~Aa~D~rIkgivL~i~s~---gG~~~a~~-------------~eI~~ai-~~fk~sGKpVvA~-~~~~~s 157 (618)
T PRK10949 96 SLFDIVNTIRQAKDDRNITGIVLDLKNF---AGADQPSM-------------QYIGKAL-REFRDSGKPVYAV-GDSYSQ 157 (618)
T ss_pred cHHHHHHHHHHHhcCCCceEEEEEeCCC---CCccHHHH-------------HHHHHHH-HHHHHhCCeEEEE-ecCccc
Confidence 4568999999999999999999975432 12222111 1112333 3466788999985 444456
Q ss_pred hhHHHHhhcCEEEEeCCceeeCc
Q 004892 112 GGLELAMGCHARIAAPKTQLGLP 134 (724)
Q Consensus 112 gG~~lalacD~ria~~~a~f~~p 134 (724)
++.-|+.+||.+++.+.+.+++.
T Consensus 158 ~~YyLASaAD~I~l~P~G~v~~~ 180 (618)
T PRK10949 158 GQYYLASFANKIYLSPQGVVDLH 180 (618)
T ss_pred hhhhhhhhCCEEEECCCceEEEe
Confidence 79999999999999988777543
No 378
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.19 E-value=0.0048 Score=68.79 Aligned_cols=39 Identities=26% Similarity=0.267 Sum_probs=35.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKG 347 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~ 347 (724)
++|+|||+|.||..++..+...|. +|+++++++++++..
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~l 222 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEEL 222 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHH
Confidence 689999999999999999999997 799999999876654
No 379
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.18 E-value=0.026 Score=68.60 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=36.3
Q ss_pred CCCcceEEEEcCCCCcHHHHHHHHHC-CCc-------------EEEEeCCHHHHHHHH
Q 004892 305 PRGVRKVAVIGGGLMGSGIATAHILN-NIY-------------VVLKEVNSEYLLKGI 348 (724)
Q Consensus 305 ~~~~~kI~VIG~G~mG~~iA~~la~~-G~~-------------V~l~d~~~~~~~~~~ 348 (724)
...++||+|||+|.||...|..|++. +++ |++.|++++.++++.
T Consensus 566 ~~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la 623 (1042)
T PLN02819 566 TKKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETV 623 (1042)
T ss_pred cccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHH
Confidence 34578999999999999999999875 334 999999998876643
No 380
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.18 E-value=0.011 Score=53.78 Aligned_cols=102 Identities=18% Similarity=0.143 Sum_probs=59.6
Q ss_pred eEEEEcC-CCCcHHHHHHHHH-CCCcE-EEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004892 310 KVAVIGG-GLMGSGIATAHIL-NNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (724)
Q Consensus 310 kI~VIG~-G~mG~~iA~~la~-~G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (724)
||+|+|+ |.||+.++..+.+ .|+++ -.+|++++.... +.+.. ....+ ...+..++++ +.+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g--~d~g~----~~~~~----------~~~~~v~~~l~~~~ 65 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVG--KDVGE----LAGIG----------PLGVPVTDDLEELL 65 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTT--SBCHH----HCTSS----------T-SSBEBS-HHHHT
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCccccc--chhhh----hhCcC----------CcccccchhHHHhc
Confidence 7999999 9999999999998 68885 456877621110 00000 00000 0123445566 446
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHh
Q 004892 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG 432 (724)
Q Consensus 386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~ 432 (724)
..+|+||+... ++...+.++...++ +..+++.|+++.-.++.
T Consensus 66 ~~~DVvIDfT~--p~~~~~~~~~~~~~---g~~~ViGTTG~~~~~~~ 107 (124)
T PF01113_consen 66 EEADVVIDFTN--PDAVYDNLEYALKH---GVPLVIGTTGFSDEQID 107 (124)
T ss_dssp TH-SEEEEES---HHHHHHHHHHHHHH---T-EEEEE-SSSHHHHHH
T ss_pred ccCCEEEEcCC--hHHhHHHHHHHHhC---CCCEEEECCCCCHHHHH
Confidence 77999999873 66555555555443 66677788888765443
No 381
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.17 E-value=0.025 Score=56.32 Aligned_cols=131 Identities=18% Similarity=0.207 Sum_probs=78.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHH-HHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (724)
++|.|||+|.+|..-+..|.+.|.+|++++.+... +.. +.+.+.+. .+...-..+.+.+
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~-----------l~~~~~i~---------~~~~~~~~~dl~~ 69 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTL-----------LAEQGGIT---------WLARCFDADILEG 69 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHH-----------HHHcCCEE---------EEeCCCCHHHhCC
Confidence 68999999999999999999999999999876541 111 12222221 1110111245789
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCC--CCCCCeeeEecCCCCC
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSP--AHVMPLLEIVRTERTS 465 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p--~~~~~lveii~~~~t~ 465 (724)
+|+||.|. ++.++...++..... ..+++.+.+.... ..|..| ...++++.-|.+.+.+
T Consensus 70 ~~lVi~at-~d~~ln~~i~~~a~~----~~ilvn~~d~~e~---------------~~f~~pa~~~~g~l~iaisT~G~s 129 (205)
T TIGR01470 70 AFLVIAAT-DDEELNRRVAHAARA----RGVPVNVVDDPEL---------------CSFIFPSIVDRSPVVVAISSGGAA 129 (205)
T ss_pred cEEEEECC-CCHHHHHHHHHHHHH----cCCEEEECCCccc---------------CeEEEeeEEEcCCEEEEEECCCCC
Confidence 99999885 466666666655432 2344432222211 122233 3445566667777778
Q ss_pred HHHHHHHHHHHHHc
Q 004892 466 AQVILDLMTVGKII 479 (724)
Q Consensus 466 ~e~~~~~~~l~~~l 479 (724)
|.....++.-++.+
T Consensus 130 P~la~~lr~~ie~~ 143 (205)
T TIGR01470 130 PVLARLLRERIETL 143 (205)
T ss_pred cHHHHHHHHHHHHh
Confidence 87777766666543
No 382
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.14 E-value=0.032 Score=50.18 Aligned_cols=77 Identities=21% Similarity=0.182 Sum_probs=51.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHC--CCcE-EEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc-Cc
Q 004892 310 KVAVIGGGLMGSGIATAHILN--NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EF 385 (724)
Q Consensus 310 kI~VIG~G~mG~~iA~~la~~--G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 385 (724)
||+|||+|.+|......+.+. +.+| .++|++++..+...+. -.+...++++ .+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~-----------------------~~~~~~~~~~~ll 58 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK-----------------------YGIPVYTDLEELL 58 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH-----------------------TTSEEESSHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH-----------------------hcccchhHHHHHH
Confidence 799999999999999888877 4454 4789999887664221 1122344553 33
Q ss_pred C--CCCEEEEcccCChHHHHHHHHHHHh
Q 004892 386 K--DVDMVIEAVIESVPLKQKIFSELEK 411 (724)
Q Consensus 386 ~--~aDlVIeav~e~~~~k~~v~~~l~~ 411 (724)
+ +.|+|+.++|. ..-.++..+..+
T Consensus 59 ~~~~~D~V~I~tp~--~~h~~~~~~~l~ 84 (120)
T PF01408_consen 59 ADEDVDAVIIATPP--SSHAEIAKKALE 84 (120)
T ss_dssp HHTTESEEEEESSG--GGHHHHHHHHHH
T ss_pred HhhcCCEEEEecCC--cchHHHHHHHHH
Confidence 3 78999999984 333455544433
No 383
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=96.12 E-value=0.017 Score=61.48 Aligned_cols=91 Identities=13% Similarity=0.106 Sum_probs=62.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cC
Q 004892 308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (724)
.+.++|||+|.++.-....+..- .-+|.+|+|+++..++...++++. +. ..+...++. ++
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~-------~~----------~~v~a~~s~~~a 192 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKR-------GG----------EAVGAADSAEEA 192 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhh-------cC----------ccceeccCHHHH
Confidence 46799999999999999888753 348999999999988876544332 11 123344554 67
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEe
Q 004892 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421 (724)
Q Consensus 385 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s 421 (724)
+++||+|+.|.|.+..+.. .+.+++++-|..
T Consensus 193 v~~aDiIvt~T~s~~Pil~------~~~l~~G~hI~a 223 (330)
T COG2423 193 VEGADIVVTATPSTEPVLK------AEWLKPGTHINA 223 (330)
T ss_pred hhcCCEEEEecCCCCCeec------HhhcCCCcEEEe
Confidence 8999999999985543221 123556665543
No 384
>PRK06046 alanine dehydrogenase; Validated
Probab=96.08 E-value=0.015 Score=62.42 Aligned_cols=92 Identities=13% Similarity=0.103 Sum_probs=58.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004892 309 RKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (724)
++|+|||+|.+|...+..+... +. .|.+||+++++.++..+++.+.+ + -.+...++. +.+
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~------~-----------~~v~~~~~~~~~l 192 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVV------G-----------CDVTVAEDIEEAC 192 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhc------C-----------ceEEEeCCHHHHh
Confidence 5899999999999999988743 43 78999999998887655432110 1 012233444 345
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004892 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (724)
Q Consensus 386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (724)
+ +|+|+.|.|.... ++. .+.+++++.|.+..|
T Consensus 193 ~-aDiVv~aTps~~P----~~~--~~~l~~g~hV~~iGs 224 (326)
T PRK06046 193 D-CDILVTTTPSRKP----VVK--AEWIKEGTHINAIGA 224 (326)
T ss_pred h-CCEEEEecCCCCc----Eec--HHHcCCCCEEEecCC
Confidence 4 9999999985432 221 123567776654443
No 385
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.06 E-value=0.019 Score=61.20 Aligned_cols=93 Identities=10% Similarity=0.077 Sum_probs=62.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004892 309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (724)
++++|||+|.++...+..+... --+|.+|+|++++.++..+.+++ .+ -.+...++. +++
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~-------~~-----------~~v~~~~~~~~av 190 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQA-------LG-----------FAVNTTLDAAEVA 190 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------cC-----------CcEEEECCHHHHh
Confidence 6899999999999999887653 34899999999998876543321 11 123334454 678
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 004892 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (724)
Q Consensus 386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (724)
++||+|+.|.+.... ++. .+.+++++.|....|.
T Consensus 191 ~~ADIV~taT~s~~P----~~~--~~~l~~G~hi~~iGs~ 224 (315)
T PRK06823 191 HAANLIVTTTPSREP----LLQ--AEDIQPGTHITAVGAD 224 (315)
T ss_pred cCCCEEEEecCCCCc----eeC--HHHcCCCcEEEecCCC
Confidence 999999999874433 221 1345677776554443
No 386
>PLN00203 glutamyl-tRNA reductase
Probab=96.05 E-value=0.0052 Score=69.62 Aligned_cols=83 Identities=16% Similarity=0.187 Sum_probs=54.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (724)
++|+|||+|.||..++..|...|. +|++++|+.+.++...+.+. + .. -.+...++. +.+.
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~---------g-~~--------i~~~~~~dl~~al~ 328 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFP---------D-VE--------IIYKPLDEMLACAA 328 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhC---------C-Cc--------eEeecHhhHHHHHh
Confidence 689999999999999999999997 79999999988766433210 1 00 000111222 5578
Q ss_pred CCCEEEEcccCCh-HHHHHHHHHH
Q 004892 387 DVDMVIEAVIESV-PLKQKIFSEL 409 (724)
Q Consensus 387 ~aDlVIeav~e~~-~~k~~v~~~l 409 (724)
++|+||.|++-.. -+..+.++.+
T Consensus 329 ~aDVVIsAT~s~~pvI~~e~l~~~ 352 (519)
T PLN00203 329 EADVVFTSTSSETPLFLKEHVEAL 352 (519)
T ss_pred cCCEEEEccCCCCCeeCHHHHHHh
Confidence 8999999875322 3344444444
No 387
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.95 E-value=0.013 Score=58.35 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=30.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 340 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 340 (724)
+||.|||+|.+|+.+|..|+..|. +++++|.+
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 579999999999999999999998 89999987
No 388
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=95.95 E-value=0.24 Score=50.36 Aligned_cols=106 Identities=15% Similarity=0.143 Sum_probs=73.3
Q ss_pred ccCccCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcc---cCC-CCCEEEEecCCCCCCCC
Q 004892 379 VLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEK---TSS-QDRIIGAHFFSPAHVMP 454 (724)
Q Consensus 379 ~~~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~---~~~-~~r~ig~h~~~p~~~~~ 454 (724)
++|.|+++++|++|.=.|..- ....+.+++.+.+++++|| +||.++|...+... +.+ .-.+..+||-.=|..-.
T Consensus 131 sDD~EAv~~aei~I~ftPfG~-~q~~Iikkii~~lpEgAII-~~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaaVPgt~~ 208 (340)
T TIGR01723 131 TDDREAVEDADIIITWLPKGN-KQPDIIKKFIDDIPEGAIV-THACTIPTTKFAKIFEDLGREDLNVTSYHPGCVPEMKG 208 (340)
T ss_pred cCcHHHhcCCCEEEEEcCCCC-CchHHHHHHHhhCCCCCEE-eccccCChHHHHHHHHhhCcccCCeeccCCCCCCCCCC
Confidence 455699999999999998433 1247788888999999987 67888887744443 332 23466677643221111
Q ss_pred eeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004892 455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (724)
Q Consensus 455 lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 487 (724)
-+=++. ...++|.++++.++.+..|+.+.++.
T Consensus 209 q~Yi~e-gyAtEEqI~klveL~~sa~k~ay~~P 240 (340)
T TIGR01723 209 QVYIAE-GYASEEAVNKLYELGKKARGKAFKMP 240 (340)
T ss_pred ceEeec-ccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 222333 35689999999999999999998873
No 389
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.92 E-value=0.018 Score=59.98 Aligned_cols=43 Identities=14% Similarity=0.134 Sum_probs=38.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHH
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTI 351 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i 351 (724)
++|.|+|+|-++.+++..|++.|. ++++++|+.+++++..+.+
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~ 170 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLF 170 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHh
Confidence 689999999999999999999995 7999999999988765543
No 390
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=95.89 E-value=0.009 Score=65.98 Aligned_cols=68 Identities=19% Similarity=0.165 Sum_probs=49.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccC-ccCcC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD-YSEFK 386 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~ 386 (724)
+||.|||+|-||..++..|+..|. ++++++|+.++++...+.+. .+ .....++ .+.+.
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~--------~~------------~~~~~~~l~~~l~ 241 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFR--------NA------------SAHYLSELPQLIK 241 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhc--------CC------------eEecHHHHHHHhc
Confidence 589999999999999999999996 79999999887665433211 01 0111122 25578
Q ss_pred CCCEEEEccc
Q 004892 387 DVDMVIEAVI 396 (724)
Q Consensus 387 ~aDlVIeav~ 396 (724)
++|+||.|++
T Consensus 242 ~aDiVI~aT~ 251 (414)
T PRK13940 242 KADIIIAAVN 251 (414)
T ss_pred cCCEEEECcC
Confidence 8999999986
No 391
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.88 E-value=0.023 Score=59.16 Aligned_cols=72 Identities=18% Similarity=0.263 Sum_probs=54.1
Q ss_pred ceEEEEcCCC-CcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004892 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (724)
++|.|||.|. +|.++|..|.+.|..|+++++....+. +.+++
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~-------------------------------------~~~~~ 201 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMA-------------------------------------SYLKD 201 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHHhh
Confidence 6899999987 999999999999999999987543221 24678
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (724)
||+||.|++-..-+.. ..+++++++++..+
T Consensus 202 ADIVIsAvg~p~~i~~-------~~vk~gavVIDvGi 231 (286)
T PRK14175 202 ADVIVSAVGKPGLVTK-------DVVKEGAVIIDVGN 231 (286)
T ss_pred CCEEEECCCCCcccCH-------HHcCCCcEEEEcCC
Confidence 9999999973322222 24678888876554
No 392
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.84 E-value=0.056 Score=48.32 Aligned_cols=92 Identities=22% Similarity=0.135 Sum_probs=57.5
Q ss_pred EEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc--cCcCCC
Q 004892 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--SEFKDV 388 (724)
Q Consensus 311 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~~a 388 (724)
|.|+|.|.+|..++..|.+.+.+|+++|.+++..+.+.+... .+-.|-.+.. ..+ ..+.+|
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~-----~~i~gd~~~~------------~~l~~a~i~~a 63 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGV-----EVIYGDATDP------------EVLERAGIEKA 63 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTS-----EEEES-TTSH------------HHHHHTTGGCE
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhccc-----ccccccchhh------------hHHhhcCcccc
Confidence 579999999999999999987799999999999777543110 0001111100 001 346789
Q ss_pred CEEEEcccCChHHHHHHHHHHHhhCCCCcEEE
Q 004892 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (724)
Q Consensus 389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~ 420 (724)
|.||.+.+++ .....+...+.+..+...+++
T Consensus 64 ~~vv~~~~~d-~~n~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 64 DAVVILTDDD-EENLLIALLARELNPDIRIIA 94 (116)
T ss_dssp SEEEEESSSH-HHHHHHHHHHHHHTTTSEEEE
T ss_pred CEEEEccCCH-HHHHHHHHHHHHHCCCCeEEE
Confidence 9999988744 333344444555455445554
No 393
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.84 E-value=0.025 Score=58.45 Aligned_cols=99 Identities=19% Similarity=0.234 Sum_probs=54.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccc-cCc---
Q 004892 309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY--- 382 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~--- 382 (724)
+||++||.|.+-.+.-...... |..|..+|+++++.+.+.+-+...+. +. .++.+. .|.
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~--L~-------------~~m~f~~~d~~~~ 186 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG--LS-------------KRMSFITADVLDV 186 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H--H--------------SSEEEEES-GGGG
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc--cc-------------CCeEEEecchhcc
Confidence 5999999999987765544443 45788999999998877653331110 01 223222 121
Q ss_pred -cCcCCCCEEEEccc--CChHHHHHHHHHHHhhCCCCcEEEec
Q 004892 383 -SEFKDVDMVIEAVI--ESVPLKQKIFSELEKACPPHCILATN 422 (724)
Q Consensus 383 -~~~~~aDlVIeav~--e~~~~k~~v~~~l~~~~~~~~ii~s~ 422 (724)
.+++++|+|+.|.- -+.+-|.+++..+.++++++++|+.-
T Consensus 187 ~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 187 TYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred ccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 35688999999874 23448999999999999999988753
No 394
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=95.80 E-value=0.012 Score=64.18 Aligned_cols=41 Identities=27% Similarity=0.239 Sum_probs=37.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC-CcEEEEeCCHHHHHHHHH
Q 004892 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIK 349 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~ 349 (724)
+||.|||+|-||...|.+|..+| ..|++.+|+.+++....+
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~ 220 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAK 220 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH
Confidence 68999999999999999999999 589999999999877544
No 395
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.78 E-value=0.26 Score=52.54 Aligned_cols=41 Identities=24% Similarity=0.153 Sum_probs=34.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 349 (724)
++|+|+|+|-+|.--.+.....|.+|+.+|+++++++.+++
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~ 208 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKK 208 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHH
Confidence 68999999977766666666689999999999999887643
No 396
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=95.78 E-value=0.031 Score=47.27 Aligned_cols=32 Identities=34% Similarity=0.412 Sum_probs=29.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHC-CCcEEEEeC
Q 004892 308 VRKVAVIGGGLMGSGIATAHILN-NIYVVLKEV 339 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~-G~~V~l~d~ 339 (724)
-++++|+|+|.+|.+++..+.+. +.+|++||+
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 36899999999999999999998 678999987
No 397
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=95.78 E-value=0.026 Score=58.45 Aligned_cols=92 Identities=18% Similarity=0.107 Sum_probs=54.5
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHC-CCcEEE-EeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cC
Q 004892 309 RKVAVIGG-GLMGSGIATAHILN-NIYVVL-KEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (724)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~la~~-G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (724)
.||+|+|+ |.||..++..+.+. +++++. +|++++..... .. ..+...+++ +.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~------------~~------------~~i~~~~dl~~l 57 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ------------GA------------LGVAITDDLEAV 57 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc------------CC------------CCccccCCHHHh
Confidence 48999998 99999999988764 677654 78887653221 00 012234455 33
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH
Q 004892 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (724)
Q Consensus 385 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~ 429 (724)
++++|+||++.+ ++.-.++.....+ .+.-++..|++++..
T Consensus 58 l~~~DvVid~t~--p~~~~~~~~~al~---~G~~vvigttG~s~~ 97 (257)
T PRK00048 58 LADADVLIDFTT--PEATLENLEFALE---HGKPLVIGTTGFTEE 97 (257)
T ss_pred ccCCCEEEECCC--HHHHHHHHHHHHH---cCCCEEEECCCCCHH
Confidence 567999998887 4443444433322 333233334455544
No 398
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=95.77 E-value=0.024 Score=59.01 Aligned_cols=78 Identities=15% Similarity=0.147 Sum_probs=46.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CCcEEEE-eCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc-
Q 004892 309 RKVAVIGGGLMGSGIATAHILN-NIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF- 385 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~-G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~- 385 (724)
.||+|||+|.||..++..+.+. +.++..+ +++.. .++..+. .. ..+..+++++++
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~~~--------~~-------------~~~~~~~d~~~l~ 59 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS-IDAVRRA--------LG-------------EAVRVVSSVDALP 59 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC-HHHHhhh--------hc-------------cCCeeeCCHHHhc
Confidence 5899999999999999999876 5665443 33221 1111100 00 013334555444
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHH
Q 004892 386 KDVDMVIEAVIESVPLKQKIFSELE 410 (724)
Q Consensus 386 ~~aDlVIeav~e~~~~k~~v~~~l~ 410 (724)
.+.|+|++|.| ...-.++..+..
T Consensus 60 ~~~DvVve~t~--~~~~~e~~~~aL 82 (265)
T PRK13303 60 QRPDLVVECAG--HAALKEHVVPIL 82 (265)
T ss_pred cCCCEEEECCC--HHHHHHHHHHHH
Confidence 56899999998 333344444443
No 399
>PRK07589 ornithine cyclodeaminase; Validated
Probab=95.70 E-value=0.038 Score=59.51 Aligned_cols=95 Identities=14% Similarity=0.162 Sum_probs=61.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004892 309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (724)
++++|||+|..+...+..+..- -.+|++|+|++++.++..+++++ .+ -.+...++. +++
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~-------~~-----------~~v~~~~~~~~av 191 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG-------PG-----------LRIVACRSVAEAV 191 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh-------cC-----------CcEEEeCCHHHHH
Confidence 6799999999998887766542 34899999999998876554432 11 023334455 678
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 004892 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (724)
Q Consensus 386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (724)
++||+|+.|.+.... ..++. .+.+++++.|....|.
T Consensus 192 ~~ADIIvtaT~S~~~--~Pvl~--~~~lkpG~hV~aIGs~ 227 (346)
T PRK07589 192 EGADIITTVTADKTN--ATILT--DDMVEPGMHINAVGGD 227 (346)
T ss_pred hcCCEEEEecCCCCC--Cceec--HHHcCCCcEEEecCCC
Confidence 999999999863220 01111 1345788766554443
No 400
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.65 E-value=0.035 Score=57.19 Aligned_cols=92 Identities=23% Similarity=0.290 Sum_probs=64.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccc--c--cCc-c
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG--V--LDY-S 383 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~--~--~~~-~ 383 (724)
.||+|||.|..|.--|+...--|-+|++.|+|.+++...-... ..++.. + .++ +
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f---------------------~~rv~~~~st~~~iee 227 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLF---------------------GGRVHTLYSTPSNIEE 227 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhh---------------------CceeEEEEcCHHHHHH
Confidence 5899999999999999998888999999999999877642211 122211 1 122 6
Q ss_pred CcCCCCEEEEccc-CChHHHHHHHHHHHhhCCCCcEEEe
Q 004892 384 EFKDVDMVIEAVI-ESVPLKQKIFSELEKACPPHCILAT 421 (724)
Q Consensus 384 ~~~~aDlVIeav~-e~~~~k~~v~~~l~~~~~~~~ii~s 421 (724)
.+..+|+||-+|- ...+.-+-+.++..+.++++++|++
T Consensus 228 ~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 228 AVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred HhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEE
Confidence 7899999998871 0111222455666677889998875
No 401
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.65 E-value=0.014 Score=64.38 Aligned_cols=39 Identities=26% Similarity=0.305 Sum_probs=32.6
Q ss_pred EEEEcCCCCcHHHHHHHHHCC-C-cEEEEeCCHHHHHHHHH
Q 004892 311 VAVIGGGLMGSGIATAHILNN-I-YVVLKEVNSEYLLKGIK 349 (724)
Q Consensus 311 I~VIG~G~mG~~iA~~la~~G-~-~V~l~d~~~~~~~~~~~ 349 (724)
|.|+|+|.+|+.++..|++.+ + +|++.||+.+++++..+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~ 41 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAE 41 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHh
Confidence 789999999999999999986 4 89999999999877543
No 402
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=95.53 E-value=0.21 Score=56.82 Aligned_cols=137 Identities=23% Similarity=0.204 Sum_probs=87.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCC--CchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEE
Q 004892 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF--DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIV 102 (724)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~--Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 102 (724)
..+++....+.+..+++.+..+ .+-+|.|.- |.|+ ++++-... ...+.. ....+ ..+.. ..|+|
T Consensus 70 gGs~g~~~~~Ki~ra~~~A~~~-~~P~v~l~d-----sgGa~~r~~eg~~~-----l~~~g~-i~~~~-~~~~~-~iP~I 135 (493)
T PF01039_consen 70 GGSVGEVHGEKIARAIELALEN-GLPLVYLVD-----SGGAFLRMQEGVES-----LMGMGR-IFRAI-ARLSG-GIPQI 135 (493)
T ss_dssp GGTBSHHHHHHHHHHHHHHHHH-TEEEEEEEE-----ESSBCGGGGGHHHH-----HHHHHH-HHHHH-HHHHT-TS-EE
T ss_pred cCCCCcccceeeehHHHHHHHc-CCCcEEecc-----ccccccccchhhhh-----hhhhHH-HHHHH-HHHhc-CCCeE
Confidence 4789999999999999998876 455566643 3344 33332211 001111 11222 33555 99999
Q ss_pred EEECccccchhHHHHhhcCEEEEeCC-ceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHHHH-------
Q 004892 103 AAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG------- 174 (724)
Q Consensus 103 aav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA------- 174 (724)
+++.|.|.|||..++..||++|++++ +.+++. |+. ..+ ..+|+.++.++.
T Consensus 136 ~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~--------------------GP~-vv~-~~~Ge~~~~~~lgG~~~h~ 193 (493)
T PF01039_consen 136 SVVTGPCTGGGAYLAALSDFVIMVKGTARIFLA--------------------GPR-VVE-SATGEEVDSEELGGADVHA 193 (493)
T ss_dssp EEEESEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------THH-HHH-HHHSSCTSHHHHHBHHHHH
T ss_pred EEEccccccchhhcccccCccccCccceEEEec--------------------ccc-ccc-cccCccccchhhhhhhhhc
Confidence 99999999999999999999999987 776632 111 112 345688888764
Q ss_pred HHCCCcceecCcch-HHHHHHHHH
Q 004892 175 WKLGLIDAVVTSEE-LLKVSRLWA 197 (724)
Q Consensus 175 ~~~Glv~~vv~~~~-l~~~a~~~a 197 (724)
...|.+|.++++++ ..+.+.++.
T Consensus 194 ~~sG~~d~v~~de~~a~~~ir~~l 217 (493)
T PF01039_consen 194 AKSGVVDYVVDDEEDALAQIRRLL 217 (493)
T ss_dssp HTSSSSSEEESSHHHHHHHHHHHH
T ss_pred ccCCCceEEEechHHHHHHHHHhh
Confidence 47899999997653 333333333
No 403
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=95.50 E-value=0.013 Score=62.48 Aligned_cols=93 Identities=18% Similarity=0.185 Sum_probs=54.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-CCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004892 309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (724)
++++|||+|..+..-+..++. .+. +|.+|+|+++++++..++++. + + -.+...++. +++
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-~------~-----------~~v~~~~~~~~av 190 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-L------G-----------VPVVAVDSAEEAV 190 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-C------C-----------TCEEEESSHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-c------c-----------ccceeccchhhhc
Confidence 579999999999998887765 334 899999999998876654432 0 1 124445555 678
Q ss_pred CCCCEEEEcccCCh--HHHHHHHHHHHhhCCCCcEEEecCCC
Q 004892 386 KDVDMVIEAVIESV--PLKQKIFSELEKACPPHCILATNTST 425 (724)
Q Consensus 386 ~~aDlVIeav~e~~--~~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (724)
++||+|+.|.+... .+ +. ...+++++.|....+.
T Consensus 191 ~~aDii~taT~s~~~~P~----~~--~~~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 191 RGADIIVTATPSTTPAPV----FD--AEWLKPGTHINAIGSY 226 (313)
T ss_dssp TTSSEEEE----SSEEES----B---GGGS-TT-EEEE-S-S
T ss_pred ccCCEEEEccCCCCCCcc----cc--HHHcCCCcEEEEecCC
Confidence 99999999987444 22 11 1346778877655443
No 404
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.49 E-value=0.063 Score=59.89 Aligned_cols=38 Identities=32% Similarity=0.498 Sum_probs=34.2
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHH
Q 004892 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL 344 (724)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~ 344 (724)
..++|.|||.|.+|.++|..|.+.|++|+++|++++.+
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~ 39 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEAL 39 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence 34789999999999999999999999999999887653
No 405
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=95.49 E-value=0.03 Score=60.31 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=30.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCH
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 341 (724)
++|.|||+|.+|+.+|..|++.|+ +++++|.+.
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 579999999999999999999998 899999875
No 406
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.44 E-value=0.14 Score=48.65 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=29.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEV 339 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~ 339 (724)
++|.|||+|.+|...+..|.+.|++|++++.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 6899999999999999999999999999963
No 407
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.44 E-value=0.037 Score=57.92 Aligned_cols=69 Identities=17% Similarity=0.248 Sum_probs=51.0
Q ss_pred ceEEEEcCCC-CcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004892 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (724)
++|.|||.|. .|.++|..|.+.|..|+++++..+.+. +.+++
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~-------------------------------------~~~~~ 202 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLP-------------------------------------ELVKQ 202 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHH-------------------------------------HHhcc
Confidence 5899999997 999999999999999999998433221 23478
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEe
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s 421 (724)
+|+||.|++....+. .+.+++++++++
T Consensus 203 aDIvI~AtG~~~~v~-------~~~lk~gavViD 229 (283)
T PRK14192 203 ADIIVGAVGKPELIK-------KDWIKQGAVVVD 229 (283)
T ss_pred CCEEEEccCCCCcCC-------HHHcCCCCEEEE
Confidence 999999995222111 134678888765
No 408
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.35 E-value=0.021 Score=64.39 Aligned_cols=41 Identities=24% Similarity=0.121 Sum_probs=37.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 349 (724)
.||.|+|+|.+|...+..+...|.+|+++|+++++++.+.+
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 68999999999999999999999999999999999887643
No 409
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.24 E-value=0.089 Score=59.27 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=35.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 347 (724)
++|.|+|+|.+|..++..|.+.|++|+++|++++.++.+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~ 39 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRL 39 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHH
Confidence 379999999999999999999999999999999987664
No 410
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=95.22 E-value=0.012 Score=57.72 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHH
Q 004892 620 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADA 673 (724)
Q Consensus 620 ~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~ 673 (724)
.++..||+.++++||.-+++..||. +..|+|.+|-.|+|.+..-.||++.+-+
T Consensus 188 ~Gf~lnriq~Ailne~wrLvasGil-~v~dvD~VmS~GLG~RYAflG~lET~HL 240 (313)
T KOG2305|consen 188 LGFALNRIQYAILNETWRLVASGIL-NVNDVDAVMSAGLGPRYAFLGPLETAHL 240 (313)
T ss_pred ccceeccccHHHHHHHHHHHHccCc-chhhHHHHHhcCCCcchhcccchhhhhc
Confidence 4789999999999999999999999 8999999999999988888899997654
No 411
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.12 E-value=0.062 Score=60.51 Aligned_cols=40 Identities=25% Similarity=0.136 Sum_probs=36.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 348 (724)
.||.|+|+|.+|...+..+...|..|+++|+++++++.+.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~ 204 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ 204 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 6999999999999999999999999999999999876654
No 412
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=95.10 E-value=0.054 Score=55.17 Aligned_cols=85 Identities=21% Similarity=0.209 Sum_probs=65.4
Q ss_pred HHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCH
Q 004892 92 NLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITS 171 (724)
Q Consensus 92 ~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a 171 (724)
..+.++++|+||.|=|---+||.--..-+|.+.|.++++|+. +.|.++++.+|.-- .+|.+. -..-.|+|
T Consensus 182 ~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~AsILWkD~---~ka~eA-Ae~mkita 251 (317)
T COG0825 182 REMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCASILWKDA---SKAKEA-AEAMKITA 251 (317)
T ss_pred HHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhhhhhcCh---hhhHHH-HHHcCCCH
Confidence 347899999999999988777766666789999999999984 55766666655432 344433 34457999
Q ss_pred HHHHHCCCcceecCc
Q 004892 172 EEGWKLGLIDAVVTS 186 (724)
Q Consensus 172 ~eA~~~Glv~~vv~~ 186 (724)
++.+++|+||.|+|.
T Consensus 252 ~dLk~lgiID~II~E 266 (317)
T COG0825 252 HDLKELGIIDGIIPE 266 (317)
T ss_pred HHHHhCCCcceeccC
Confidence 999999999999964
No 413
>PRK06199 ornithine cyclodeaminase; Validated
Probab=95.09 E-value=0.042 Score=60.09 Aligned_cols=74 Identities=16% Similarity=0.118 Sum_probs=53.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHC--C-CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-c
Q 004892 308 VRKVAVIGGGLMGSGIATAHILN--N-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~--G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (724)
.++++|||+|.++......++.- . -+|.+|+|+++++++..+++...+. +. ..+...++. +
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~-----~~----------~~v~~~~s~~e 219 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYP-----QI----------TNVEVVDSIEE 219 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcC-----CC----------ceEEEeCCHHH
Confidence 36799999999999999888763 2 3899999999998876654432110 00 013334555 6
Q ss_pred CcCCCCEEEEccc
Q 004892 384 EFKDVDMVIEAVI 396 (724)
Q Consensus 384 ~~~~aDlVIeav~ 396 (724)
++++||+|+.|.+
T Consensus 220 av~~ADIVvtaT~ 232 (379)
T PRK06199 220 VVRGSDIVTYCNS 232 (379)
T ss_pred HHcCCCEEEEccC
Confidence 7899999999885
No 414
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=95.05 E-value=0.65 Score=52.85 Aligned_cols=139 Identities=16% Similarity=0.156 Sum_probs=82.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHH-HHHhcCCCcEEE
Q 004892 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV-NLIEDCKKPIVA 103 (724)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kp~Ia 103 (724)
.-+++....+.+..+++.+..+. +-+|.|.-.|+ +.+.+-.. .+.... +.+. .....-..|.|+
T Consensus 95 gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSgG-----arm~eg~~--------~l~~~~-~~~~~~~~~s~~iP~Is 159 (512)
T TIGR01117 95 GGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSGG-----ARIQEAVD--------ALKGYG-DIFYRNTIASGVVPQIS 159 (512)
T ss_pred ccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCCC-----CCccccch--------hhhhHH-HHHHHHHHHcCCCcEEE
Confidence 47888889999999999887654 55666643322 22221000 000111 1111 112334589999
Q ss_pred EECccccchhHHHHhhcCEEEEeCCc-eeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHHHH-------H
Q 004892 104 AVEGLALGGGLELAMGCHARIAAPKT-QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------W 175 (724)
Q Consensus 104 av~G~a~GgG~~lalacD~ria~~~a-~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA-------~ 175 (724)
++.|.|.||+......|||+|+++++ .+++ + |+. ..+. .+|+.+++++. .
T Consensus 160 vv~G~~~GG~a~~~al~D~vim~~~~a~i~~-----------a---------GP~-vv~~-~~Ge~v~~e~lGGa~~h~~ 217 (512)
T TIGR01117 160 AIMGPCAGGAVYSPALTDFIYMVDNTSQMFI-----------T---------GPQ-VIKT-VTGEEVTAEQLGGAMAHNS 217 (512)
T ss_pred EEecCCCcHHHHHHHhcCceEEeccceEEEe-----------c---------ChH-HHHh-hcCcccchhhcchHHHhcc
Confidence 99999999998888899999999863 3443 1 111 1111 34566666554 2
Q ss_pred HCCCcceecCcc-hHHHHHHHHHHHH
Q 004892 176 KLGLIDAVVTSE-ELLKVSRLWALDI 200 (724)
Q Consensus 176 ~~Glv~~vv~~~-~l~~~a~~~a~~l 200 (724)
..|++|.+++++ +..+.++++...+
T Consensus 218 ~sGv~d~~~~de~ea~~~~r~~ls~l 243 (512)
T TIGR01117 218 VSGVAHFIAEDDDDCIMLIRRLLSFL 243 (512)
T ss_pred ccceeEEecCChHHHHHHHHHHHHhC
Confidence 589999998554 4555555554443
No 415
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.04 E-value=0.045 Score=57.41 Aligned_cols=42 Identities=14% Similarity=0.261 Sum_probs=37.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHH
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKT 350 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~ 350 (724)
++|.|+|+|-.|++++..|++.|. +|+++||+.++.++..+.
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~ 170 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADV 170 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH
Confidence 579999999999999999999997 799999999887765543
No 416
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=95.04 E-value=0.072 Score=54.84 Aligned_cols=49 Identities=14% Similarity=0.147 Sum_probs=42.9
Q ss_pred CCcceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHH
Q 004892 306 RGVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEAN 354 (724)
Q Consensus 306 ~~~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~ 354 (724)
+..+++.|-|+ +-+|..+|..|++.|++|+++.|+++++++..+++++.
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~ 53 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDK 53 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHh
Confidence 34567888898 99999999999999999999999999999988777653
No 417
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=94.99 E-value=0.1 Score=60.60 Aligned_cols=94 Identities=13% Similarity=0.112 Sum_probs=60.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc--cCcC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--SEFK 386 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~ 386 (724)
.+|.|+|+|.+|..+|..|.+.|++|+++|.|+++++.+.+. ...+-.|..+.. +.+ ..++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-----g~~~i~GD~~~~------------~~L~~a~i~ 480 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-----GIRAVLGNAANE------------EIMQLAHLD 480 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-----CCeEEEcCCCCH------------HHHHhcCcc
Confidence 579999999999999999999999999999999988775421 000001111100 001 2467
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEE
Q 004892 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (724)
Q Consensus 387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~ 420 (724)
+||.||.++++|.+... +...+....+.-.|++
T Consensus 481 ~a~~viv~~~~~~~~~~-iv~~~~~~~~~~~iia 513 (558)
T PRK10669 481 CARWLLLTIPNGYEAGE-IVASAREKRPDIEIIA 513 (558)
T ss_pred ccCEEEEEcCChHHHHH-HHHHHHHHCCCCeEEE
Confidence 99999999987665432 3333444433334544
No 418
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=94.98 E-value=0.13 Score=52.14 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=30.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCc---EEEEeCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIY---VVLKEVN 340 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~---V~l~d~~ 340 (724)
+||.|+|+|.+|.++|..|...|.. |+++||+
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 5899999999999999999999975 9999999
No 419
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.96 E-value=0.034 Score=46.24 Aligned_cols=35 Identities=37% Similarity=0.470 Sum_probs=32.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHH
Q 004892 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL 344 (724)
Q Consensus 310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~ 344 (724)
||.|||+|..|.-+|..|++.|.+|+++++++.-.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 68999999999999999999999999999987655
No 420
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=94.96 E-value=0.098 Score=48.83 Aligned_cols=32 Identities=25% Similarity=0.404 Sum_probs=29.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCH
Q 004892 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (724)
Q Consensus 310 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 341 (724)
||.|||+|.+|+.++..|++.|+ +++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999999998 799999763
No 421
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=94.95 E-value=0.73 Score=52.91 Aligned_cols=147 Identities=16% Similarity=0.107 Sum_probs=87.0
Q ss_pred EEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHH--HH
Q 004892 18 ITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV--NL 93 (724)
Q Consensus 18 i~l~~p~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~ 93 (724)
+.-|.+. ..+++....+.+..+++.+... .+-+|.|.-.|+.+ +.+ ..+........-+++. ..
T Consensus 133 v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~-~lPlV~l~DSgGar-----l~~------q~e~~~~~~~~g~if~~~~~ 200 (569)
T PLN02820 133 FVANDPTVKGGTYYPITVKKHLRAQEIAAQC-RLPCIYLVDSGGAN-----LPR------QAEVFPDRDHFGRIFYNQAR 200 (569)
T ss_pred EEEECCCccCCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcC-----Ccc------cccccchHhHHHHHHHHHHH
Confidence 3334443 4799999999999999988765 45666665433332 211 0000000001112221 22
Q ss_pred HhcCCCcEEEEECccccchhHHHHhhcCEEEEeCC-ceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHH
Q 004892 94 IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172 (724)
Q Consensus 94 l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~ 172 (724)
+....+|.|++|-|.|.|||......||++|+++. +.+++ -|+... + ..+|+.++++
T Consensus 201 ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~--------------------aGP~vV-~-~~~Ge~v~~e 258 (569)
T PLN02820 201 MSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFL--------------------AGPPLV-K-AATGEEVSAE 258 (569)
T ss_pred HhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEe--------------------cCHHHH-H-hhcCcccCHH
Confidence 44567999999999999999999999999999864 54443 121111 1 1456666666
Q ss_pred HH-----H--HCCCcceecCcchHHHHHHHHHHHHH
Q 004892 173 EG-----W--KLGLIDAVVTSEELLKVSRLWALDIA 201 (724)
Q Consensus 173 eA-----~--~~Glv~~vv~~~~l~~~a~~~a~~la 201 (724)
+. + ..|.+|.+++++. ++...++++.
T Consensus 259 eLGGa~~h~~~sGv~d~~~~de~---~a~~~~R~ll 291 (569)
T PLN02820 259 DLGGADVHCKVSGVSDHFAQDEL---HALAIGRNIV 291 (569)
T ss_pred HhCCHHHhcccccccccccCchH---HHHHHHHHHH
Confidence 65 2 4788888886553 3444444433
No 422
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=94.95 E-value=0.02 Score=63.69 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=32.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCH
Q 004892 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 341 (724)
|++|.|||+|.+|.++|..|++.|++|+++|++.
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4699999999999999999999999999999975
No 423
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.92 E-value=0.11 Score=60.54 Aligned_cols=95 Identities=20% Similarity=0.130 Sum_probs=62.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc--cCcC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--SEFK 386 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~ 386 (724)
.+|.|+|.|.+|..+++.|.+.|++|+++|.|+++++.+.+. ...+-.|-.+.. +.+ ..++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~------------~~L~~agi~ 463 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY-----GYKVYYGDATQL------------ELLRAAGAE 463 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC-----CCeEEEeeCCCH------------HHHHhcCCc
Confidence 579999999999999999999999999999999988875421 000001111100 011 3468
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEe
Q 004892 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421 (724)
Q Consensus 387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s 421 (724)
+||.||.+++++... ..+...+.+..++-.|++-
T Consensus 464 ~A~~vv~~~~d~~~n-~~i~~~~r~~~p~~~IiaR 497 (601)
T PRK03659 464 KAEAIVITCNEPEDT-MKIVELCQQHFPHLHILAR 497 (601)
T ss_pred cCCEEEEEeCCHHHH-HHHHHHHHHHCCCCeEEEE
Confidence 999999999865443 3444455555555556653
No 424
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=94.89 E-value=0.072 Score=57.38 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=30.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCH
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 341 (724)
.||.|||+|.+|+.+|..|+.+|. +++++|.+.
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 579999999999999999999999 899999874
No 425
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.81 E-value=0.17 Score=56.92 Aligned_cols=41 Identities=27% Similarity=0.289 Sum_probs=37.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 004892 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 348 (724)
.++|.|+|+|.+|..++..|.+.|++|+++|.+++..+...
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~ 271 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELA 271 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHH
Confidence 47899999999999999999999999999999999877654
No 426
>PRK06153 hypothetical protein; Provisional
Probab=94.79 E-value=0.055 Score=58.32 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=29.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 340 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 340 (724)
.+|+|||+|-.|+.++..|++.|. +++++|-+
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 479999999999999999999998 89999865
No 427
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=94.78 E-value=0.071 Score=47.92 Aligned_cols=79 Identities=15% Similarity=0.150 Sum_probs=54.0
Q ss_pred ceEEEEc----CCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC
Q 004892 309 RKVAVIG----GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (724)
Q Consensus 309 ~kI~VIG----~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (724)
++|+||| -+.+|.-+...|.++|++|+.++...+.+ ..+....++++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----------------------------~G~~~y~sl~e 51 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----------------------------LGIKCYPSLAE 51 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----------------------------TTEE-BSSGGG
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----------------------------CcEEeeccccC
Confidence 5799999 58889999999999999999988665321 12333445543
Q ss_pred c-CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEE
Q 004892 385 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCIL 419 (724)
Q Consensus 385 ~-~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii 419 (724)
. ...|+++.++| .+...++++++...- ...++
T Consensus 52 ~p~~iDlavv~~~--~~~~~~~v~~~~~~g-~~~v~ 84 (116)
T PF13380_consen 52 IPEPIDLAVVCVP--PDKVPEIVDEAAALG-VKAVW 84 (116)
T ss_dssp CSST-SEEEE-S---HHHHHHHHHHHHHHT--SEEE
T ss_pred CCCCCCEEEEEcC--HHHHHHHHHHHHHcC-CCEEE
Confidence 4 68999999998 888888998887763 33444
No 428
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.77 E-value=0.068 Score=55.61 Aligned_cols=71 Identities=17% Similarity=0.250 Sum_probs=53.2
Q ss_pred ceEEEEcCCCC-cHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004892 309 RKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~m-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (724)
++|+|||.|.. |.++|..|.+.|..|+++......+. +.+++
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~~l~-------------------------------------~~~~~ 201 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRDLA-------------------------------------AHTRQ 201 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCCCHH-------------------------------------HHhhh
Confidence 68999999877 99999999999999998764322111 34678
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecC
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (724)
||+||.|++-. .++.. ..+++++++++..
T Consensus 202 ADIVV~avG~~-----~~i~~--~~ik~gavVIDVG 230 (285)
T PRK14189 202 ADIVVAAVGKR-----NVLTA--DMVKPGATVIDVG 230 (285)
T ss_pred CCEEEEcCCCc-----CccCH--HHcCCCCEEEEcc
Confidence 99999999832 23332 5678999887644
No 429
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.71 E-value=0.042 Score=57.96 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=31.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCc-EEEEeCCHH
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSE 342 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~-V~l~d~~~~ 342 (724)
+++.|+|+|-+|.+++..|+..|.. |++++|+++
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~ 161 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD 161 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch
Confidence 5789999999999999999999996 999999973
No 430
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=94.67 E-value=0.1 Score=56.44 Aligned_cols=100 Identities=16% Similarity=0.162 Sum_probs=57.8
Q ss_pred cceEEEEcC-CCCcHHHHHHHHHC-CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc--c
Q 004892 308 VRKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--S 383 (724)
Q Consensus 308 ~~kI~VIG~-G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~ 383 (724)
|.||+|||+ |.+|..++..+.+. +++++.+-.+.+..+...+.. ... .+.. ... .+++ .
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~----~~~--~~~~----------~~~-~~~~~~~ 64 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVH----PHL--RGLV----------DLV-LEPLDPE 64 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhC----ccc--cccc----------Cce-eecCCHH
Confidence 469999997 99999999999876 677655433322211111100 000 0000 001 1111 1
Q ss_pred CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH
Q 004892 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (724)
Q Consensus 384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~ 429 (724)
...++|+|+.|+|.. .-.++..++. ..++.|+++++...+.
T Consensus 65 ~~~~vD~Vf~alP~~--~~~~~v~~a~---~aG~~VID~S~~fR~~ 105 (343)
T PRK00436 65 ILAGADVVFLALPHG--VSMDLAPQLL---EAGVKVIDLSADFRLK 105 (343)
T ss_pred HhcCCCEEEECCCcH--HHHHHHHHHH---hCCCEEEECCcccCCC
Confidence 346899999999953 3344444443 3578888999887663
No 431
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=94.60 E-value=0.043 Score=60.29 Aligned_cols=40 Identities=25% Similarity=0.266 Sum_probs=34.3
Q ss_pred ceEEEEcCCCCcHHH-HHHHHHCCCcEEEEeCCHHHHHHHH
Q 004892 309 RKVAVIGGGLMGSGI-ATAHILNNIYVVLKEVNSEYLLKGI 348 (724)
Q Consensus 309 ~kI~VIG~G~mG~~i-A~~la~~G~~V~l~d~~~~~~~~~~ 348 (724)
+||.++|+|.||++. +..|.+.|++|+++|++++.+++..
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~ 41 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALN 41 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHh
Confidence 379999999999865 8888899999999999988766654
No 432
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=94.56 E-value=0.12 Score=52.61 Aligned_cols=160 Identities=13% Similarity=0.137 Sum_probs=79.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhh-------------cC
Q 004892 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNAL-------------KM 375 (724)
Q Consensus 310 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~-------------~~ 375 (724)
||.|||+|..|+.++..|+..|. +++++|.+.=.......+ .+-+...-|+-..+.+...+ .+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQ---flf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~ 77 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQ---FLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNK 77 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccc---cCCChhhCChHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 68999999999999999999998 788888764222111100 00000011111111111111 11
Q ss_pred cccccCc--cCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEE-ecCCCCCHHHHhcccCCCCCEEEEecCCCCCC
Q 004892 376 LKGVLDY--SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA-TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHV 452 (724)
Q Consensus 376 i~~~~~~--~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~-s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~ 452 (724)
+....+. +-+++.|+||.|+- +.+. +..+.+..... +..++ +.+.+..- ...-..+........++..+...
T Consensus 78 i~~~~~~~~~f~~~~DvVi~a~D-n~~a-R~~ln~~c~~~--~iplI~~g~~G~~G-~v~vi~p~~t~c~~C~~~~~~~~ 152 (234)
T cd01484 78 VGPEQDFNDTFFEQFHIIVNALD-NIIA-RRYVNGMLIFL--IVPLIESGTEGFKG-NAQVILPGMTECIECTLYPPQKN 152 (234)
T ss_pred CChhhhchHHHHhCCCEEEECCC-CHHH-HHHHHHHHHHc--CCCEEEEcccCCce-EEEEEcCCCCCCcccCCCCCCCC
Confidence 1111111 34688999999974 4444 33333332222 23333 33333221 11111111112223334334344
Q ss_pred CCeeeEecCCCCCHHHHHHHHHHHH
Q 004892 453 MPLLEIVRTERTSAQVILDLMTVGK 477 (724)
Q Consensus 453 ~~lveii~~~~t~~e~~~~~~~l~~ 477 (724)
.|...+-..+.+.+-.+++++.++.
T Consensus 153 ~p~Cti~~~P~~~~hci~~a~~~~~ 177 (234)
T cd01484 153 FPMCTIASMPRLPEHCIEWARMLQW 177 (234)
T ss_pred CCccccCCCCCCchHHHHHHHHHHh
Confidence 5666777777778888888888875
No 433
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=94.44 E-value=0.087 Score=54.90 Aligned_cols=40 Identities=20% Similarity=0.014 Sum_probs=35.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHH
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI 348 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 348 (724)
++|.|+|+|-.+.+++..|++.|. +|++++|++++.+...
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la 163 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALA 163 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence 479999999999999999999997 5999999998776643
No 434
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=94.38 E-value=0.073 Score=56.02 Aligned_cols=34 Identities=15% Similarity=0.319 Sum_probs=31.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHH
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE 342 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~ 342 (724)
+++.|||+|-.+++++..++..|. +|++++|+++
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 579999999999999999999887 8999999965
No 435
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=94.32 E-value=0.91 Score=47.76 Aligned_cols=97 Identities=20% Similarity=0.206 Sum_probs=55.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCC-HHHHHHhhcCcccccCccCc
Q 004892 309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLT-QDKANNALKMLKGVLDYSEF 385 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~~ 385 (724)
-||+|||+|.+|......+.+. +.++. ++|++++....... .+.|.-. ....+..+. ...+
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A---------~~~Gi~~~~~~ie~LL~-------~~~~ 68 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARA---------RRLGVATSAEGIDGLLA-------MPEF 68 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHH---------HHcCCCcccCCHHHHHh-------CcCC
Confidence 4799999999999977777654 55654 67998864321111 1112110 011111110 0124
Q ss_pred CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCC
Q 004892 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 426 (724)
Q Consensus 386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~ 426 (724)
.+.|+|+++.+. ..-.+....+ ...++.++++++..
T Consensus 69 ~dIDiVf~AT~a--~~H~e~a~~a---~eaGk~VID~sPA~ 104 (302)
T PRK08300 69 DDIDIVFDATSA--GAHVRHAAKL---REAGIRAIDLTPAA 104 (302)
T ss_pred CCCCEEEECCCH--HHHHHHHHHH---HHcCCeEEECCccc
Confidence 679999999983 3333443333 34677777777654
No 436
>PLN03075 nicotianamine synthase; Provisional
Probab=94.30 E-value=0.34 Score=50.75 Aligned_cols=101 Identities=18% Similarity=0.148 Sum_probs=67.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccc-cC---
Q 004892 308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LD--- 381 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~--- 381 (724)
-++|+.||+|..|.+-...++.. +-.++.+|++++.++.+++.+.+. .+ + ..++++. .|
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~------~g-L--------~~rV~F~~~Da~~ 188 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD------PD-L--------SKRMFFHTADVMD 188 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc------cC-c--------cCCcEEEECchhh
Confidence 37899999999877655444443 346999999999998877544210 11 0 1223332 11
Q ss_pred -ccCcCCCCEEEEcccC--ChHHHHHHHHHHHhhCCCCcEEEecC
Q 004892 382 -YSEFKDVDMVIEAVIE--SVPLKQKIFSELEKACPPHCILATNT 423 (724)
Q Consensus 382 -~~~~~~aDlVIeav~e--~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (724)
.....+.|+|+..+-= +..-++.+++.+.+.++++.+++.-+
T Consensus 189 ~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 189 VTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 1235689999988621 23678899999999999999887554
No 437
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=94.03 E-value=0.15 Score=53.05 Aligned_cols=32 Identities=34% Similarity=0.436 Sum_probs=25.8
Q ss_pred ceEEEEc-CCCCcHHHHHHHHH-CCCcEEE-EeCC
Q 004892 309 RKVAVIG-GGLMGSGIATAHIL-NNIYVVL-KEVN 340 (724)
Q Consensus 309 ~kI~VIG-~G~mG~~iA~~la~-~G~~V~l-~d~~ 340 (724)
.||+|+| +|.||..++..+.+ .+++++. +|++
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~ 36 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH 36 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 4899999 59999999999986 4777555 6743
No 438
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.98 E-value=0.11 Score=45.64 Aligned_cols=73 Identities=19% Similarity=0.409 Sum_probs=50.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccc-cCc-cCcC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY-SEFK 386 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~~~ 386 (724)
++|.|||+|.+|..=+..|.+.|.+|+++..+.+..+ + .++.. ..+ +.+.
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----------------~------------~i~~~~~~~~~~l~ 59 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----------------G------------LIQLIRREFEEDLD 59 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----------------T------------SCEEEESS-GGGCT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----------------h------------HHHHHhhhHHHHHh
Confidence 6899999999999999999999999999998861111 1 11111 111 4688
Q ss_pred CCCEEEEcccCChHHHHHHHHHHH
Q 004892 387 DVDMVIEAVIESVPLKQKIFSELE 410 (724)
Q Consensus 387 ~aDlVIeav~e~~~~k~~v~~~l~ 410 (724)
++|+||.|. ++..+.+.+++...
T Consensus 60 ~~~lV~~at-~d~~~n~~i~~~a~ 82 (103)
T PF13241_consen 60 GADLVFAAT-DDPELNEAIYADAR 82 (103)
T ss_dssp TESEEEE-S-S-HHHHHHHHHHHH
T ss_pred hheEEEecC-CCHHHHHHHHHHHh
Confidence 999999776 46666666665543
No 439
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=93.96 E-value=0.26 Score=57.69 Aligned_cols=94 Identities=14% Similarity=0.136 Sum_probs=61.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc--cCcC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--SEFK 386 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~ 386 (724)
++|-|+|.|.+|..+++.|.+.|++++++|.|+++++.+.+. ...+-.|-.+.. +-+ ..++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~------------~~L~~agi~ 463 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF-----GMKVFYGDATRM------------DLLESAGAA 463 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc-----CCeEEEEeCCCH------------HHHHhcCCC
Confidence 689999999999999999999999999999999998876431 000111111100 011 3467
Q ss_pred CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEE
Q 004892 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (724)
Q Consensus 387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~ 420 (724)
++|+||.++.++.. ...+...+.+..++-.|++
T Consensus 464 ~A~~vvv~~~d~~~-n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 464 KAEVLINAIDDPQT-SLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred cCCEEEEEeCCHHH-HHHHHHHHHHhCCCCeEEE
Confidence 89999999864443 3344444555444444554
No 440
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=93.91 E-value=0.1 Score=53.06 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=29.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCH
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 341 (724)
.||.|||+|..|+.+|..|++.|. +++++|.+.
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 589999999999999999999998 788887653
No 441
>PRK12829 short chain dehydrogenase; Provisional
Probab=93.88 E-value=0.28 Score=50.50 Aligned_cols=39 Identities=28% Similarity=0.286 Sum_probs=34.8
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004892 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (724)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 347 (724)
++|.|+|+ |.+|..++..|++.|++|++.+|+++..+..
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~ 51 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAAT 51 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 68999987 9999999999999999999999998766554
No 442
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.85 E-value=0.13 Score=53.54 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=52.6
Q ss_pred ceEEEEcCC-CCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004892 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (724)
++|.|||.| ..|.++|..|.+.|..|+++......+. +.++.
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~-------------------------------------~~~~~ 200 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLS-------------------------------------FYTQN 200 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHH-------------------------------------HHHHh
Confidence 689999998 9999999999999999999865432221 23578
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecC
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (724)
||+||.|+.-..-+.. ..+++++++++..
T Consensus 201 ADIvV~AvG~p~~i~~-------~~vk~GavVIDvG 229 (285)
T PRK14191 201 ADIVCVGVGKPDLIKA-------SMVKKGAVVVDIG 229 (285)
T ss_pred CCEEEEecCCCCcCCH-------HHcCCCcEEEEee
Confidence 9999999963322222 3458899887643
No 443
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=93.84 E-value=0.2 Score=55.30 Aligned_cols=163 Identities=13% Similarity=0.072 Sum_probs=80.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC------cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcC------cc
Q 004892 310 KVAVIGGGLMGSGIATAHILNNI------YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKM------LK 377 (724)
Q Consensus 310 kI~VIG~G~mG~~iA~~la~~G~------~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~------i~ 377 (724)
||.|||+|.+|+.++..|+..|. +++++|.+.=.......+ .+-+...-|+-..+.+...+.. +.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQ---fLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~ 77 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQ---FLFRPHDVGKPKSEVAAAAVKAMNPDLKIT 77 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcC---ccCChhHcCcHHHHHHHHHHHHHCCCCEEE
Confidence 68999999999999999999998 899999754221111100 0000001111111111111111 11
Q ss_pred ccc--------C---ccCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEec
Q 004892 378 GVL--------D---YSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHF 446 (724)
Q Consensus 378 ~~~--------~---~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~ 446 (724)
... + .+-+++.|+||.|+- +.+....+-+.....- -.+|-+.+.+..-. .....+..........
T Consensus 78 a~~~~v~~~~~~~~~~~f~~~~DvVi~alD-n~~aR~~vn~~C~~~~--iPli~~gt~G~~G~-v~v~iP~~te~y~~~~ 153 (435)
T cd01490 78 ALQNRVGPETEHIFNDEFWEKLDGVANALD-NVDARMYVDRRCVYYR--KPLLESGTLGTKGN-TQVVIPHLTESYSSSR 153 (435)
T ss_pred EEecccChhhhhhhhHHHhcCCCEEEECCC-CHHHHHHHHHHHHHhC--CCEEEEecccceeE-EEEEeCCCCCCccCCC
Confidence 100 0 122577999999974 4554443333332221 12333333332111 1111111001111122
Q ss_pred CCCCCCCCeeeEecCCCCCHHHHHHHHHHHHHc
Q 004892 447 FSPAHVMPLLEIVRTERTSAQVILDLMTVGKII 479 (724)
Q Consensus 447 ~~p~~~~~lveii~~~~t~~e~~~~~~~l~~~l 479 (724)
..|....|..++-..+...+-.+++++.+++.+
T Consensus 154 ~p~~~~~P~Ctl~~~P~~~eHcI~wA~~~F~~l 186 (435)
T cd01490 154 DPPEKSIPLCTLKNFPNAIEHTIQWARDEFEGL 186 (435)
T ss_pred CCCCCCCCCccccCCCCCchHHHHHHHHHHHHH
Confidence 223334566667777778888999999998864
No 444
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.84 E-value=0.46 Score=47.73 Aligned_cols=130 Identities=21% Similarity=0.202 Sum_probs=74.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (724)
++|.|||+|.++..=+..|++.|.+|+++..+-. .+.. +.+.+.++ .+.-.-..+.+.+
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~-----------l~~~~~i~---------~~~r~~~~~dl~g 85 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLD-----------LKKYGNLK---------LIKGNYDKEFIKD 85 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHH-----------HHhCCCEE---------EEeCCCChHHhCC
Confidence 4899999999999999999999999999965432 1111 12222221 1110111246789
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCC--CCCCeeeEecCCCCC
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTERTS 465 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~--~~~~lveii~~~~t~ 465 (724)
+++||.|+ +|.++-+.+.+... ...+++.+...... ..|+.|. ..++++..|.+.+.+
T Consensus 86 ~~LViaAT-dD~~vN~~I~~~a~----~~~~lvn~vd~p~~---------------~dFi~PAiv~rg~l~IaIST~G~s 145 (223)
T PRK05562 86 KHLIVIAT-DDEKLNNKIRKHCD----RLYKLYIDCSDYKK---------------GLCIIPYQRSTKNFVFALNTKGGS 145 (223)
T ss_pred CcEEEECC-CCHHHHHHHHHHHH----HcCCeEEEcCCccc---------------CeEEeeeEEecCCEEEEEECCCcC
Confidence 99999986 47776666655433 32333333222111 1233332 344566666666677
Q ss_pred HHHHHHHHHHHHH
Q 004892 466 AQVILDLMTVGKI 478 (724)
Q Consensus 466 ~e~~~~~~~l~~~ 478 (724)
|.....++.-++.
T Consensus 146 P~lar~lR~~ie~ 158 (223)
T PRK05562 146 PKTSVFIGEKVKN 158 (223)
T ss_pred cHHHHHHHHHHHH
Confidence 7666665555543
No 445
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=93.83 E-value=0.14 Score=52.32 Aligned_cols=98 Identities=16% Similarity=0.087 Sum_probs=54.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC-----------CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCc-
Q 004892 309 RKVAVIGGGLMGSGIATAHILNN-----------IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML- 376 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G-----------~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i- 376 (724)
.||.|||+|..|+.++..|++.| .+++++|.+.=.......+ +-....-|+-..+.+...+..+
T Consensus 12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQ----lf~~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ----AFYPADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcc----cCChhHCCcHHHHHHHHHHHhcc
Confidence 58999999999999999999874 2899999753221111110 0001112222222122212111
Q ss_pred ----cccc----CccCcCCCCEEEEcccCChHHHHHHHHHHHh
Q 004892 377 ----KGVL----DYSEFKDVDMVIEAVIESVPLKQKIFSELEK 411 (724)
Q Consensus 377 ----~~~~----~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~ 411 (724)
.... ..+.+.++|+||.|+- +...+..+.+....
T Consensus 88 ~~~i~a~~~~~~~~~~~~~~DiVi~avD-n~~aR~~l~~~~~~ 129 (244)
T TIGR03736 88 GTDWTAHPERVERSSTLHRPDIVIGCVD-NRAARLAILRAFEG 129 (244)
T ss_pred CceEEEEEeeeCchhhhcCCCEEEECCC-CHHHHHHHHHHHHH
Confidence 1111 0123567999999984 67777777666554
No 446
>PRK12828 short chain dehydrogenase; Provisional
Probab=93.82 E-value=0.11 Score=52.42 Aligned_cols=39 Identities=26% Similarity=0.264 Sum_probs=34.1
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004892 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (724)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 347 (724)
++|.|.|+ |.+|..++..|++.|++|++.+|+++...+.
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~ 47 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQT 47 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHH
Confidence 57889987 9999999999999999999999998765543
No 447
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.81 E-value=0.19 Score=51.01 Aligned_cols=33 Identities=30% Similarity=0.326 Sum_probs=30.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCH
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 341 (724)
.||.|+|+|.+|+.++..|++.|. +++++|.+.
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 579999999999999999999998 899999764
No 448
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=93.80 E-value=1 Score=44.94 Aligned_cols=130 Identities=23% Similarity=0.234 Sum_probs=79.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCH-HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS-EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~-~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (724)
++|.|||.|..|.-=+..|++.|-+|+++..+. +.+.. +.+.+.+. .+.-.-+.+.+.+
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~-----------~~~~~~i~---------~~~~~~~~~~~~~ 72 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKA-----------LIEEGKIK---------WIEREFDAEDLDD 72 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHH-----------HHHhcCcc---------hhhcccChhhhcC
Confidence 689999999999999999999999999998766 22222 22223222 1111122355677
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCC--CCCCeeeEecCCCCC
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTERTS 465 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~--~~~~lveii~~~~t~ 465 (724)
+++||.|+. |.++.+.+++...+. .+++ |.... |+. ..|+.|. ...++...|.+.+.+
T Consensus 73 ~~lviaAt~-d~~ln~~i~~~a~~~----~i~v-Nv~D~-----------p~~---~~f~~Pa~~~r~~l~iaIsT~G~s 132 (210)
T COG1648 73 AFLVIAATD-DEELNERIAKAARER----RILV-NVVDD-----------PEL---CDFIFPAIVDRGPLQIAISTGGKS 132 (210)
T ss_pred ceEEEEeCC-CHHHHHHHHHHHHHh----CCce-eccCC-----------ccc---CceecceeeccCCeEEEEECCCCC
Confidence 999999875 677777777665443 2333 22221 111 2333333 445566667777777
Q ss_pred HHHHHHHHHHHHH
Q 004892 466 AQVILDLMTVGKI 478 (724)
Q Consensus 466 ~e~~~~~~~l~~~ 478 (724)
|.....++.-.+.
T Consensus 133 P~la~~ir~~Ie~ 145 (210)
T COG1648 133 PVLARLLREKIEA 145 (210)
T ss_pred hHHHHHHHHHHHH
Confidence 7766666665554
No 449
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=93.77 E-value=0.63 Score=48.76 Aligned_cols=87 Identities=14% Similarity=0.040 Sum_probs=65.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCC-HHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (724)
+.++|+|.|.+|+..|.++...|..|+.||.= +.....+ . .++..+-.|.+..
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a-------------~-------------gvq~vsl~Eil~~ 200 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEA-------------F-------------GVQLVSLEEILPK 200 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHHh-------------c-------------cceeeeHHHHHhh
Confidence 68999999999999999999999999999853 3322211 1 1233333367889
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEe
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s 421 (724)
||+|-.-+|-.++.++-+-.+....++.+.-|+.
T Consensus 201 ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN 234 (406)
T KOG0068|consen 201 ADFITLHVPLTPSTEKLLNDETFAKMKKGVRIIN 234 (406)
T ss_pred cCEEEEccCCCcchhhccCHHHHHHhhCCcEEEE
Confidence 9999999998888877776777777888887653
No 450
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=93.73 E-value=0.12 Score=49.22 Aligned_cols=73 Identities=19% Similarity=0.257 Sum_probs=47.9
Q ss_pred ceEEEEcCC-CCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004892 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (724)
++|.|||-+ ..|.+++..|.+.|..|++++...+.++ +.++.
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~-------------------------------------~~~~~ 79 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQ-------------------------------------EITRR 79 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHH-------------------------------------HHHTT
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccc-------------------------------------ceeee
Confidence 789999986 6999999999999999999886643322 23578
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (724)
||+||.|+.-.--++ .+.+++++++++....
T Consensus 80 ADIVVsa~G~~~~i~-------~~~ik~gavVIDvG~~ 110 (160)
T PF02882_consen 80 ADIVVSAVGKPNLIK-------ADWIKPGAVVIDVGIN 110 (160)
T ss_dssp SSEEEE-SSSTT-B--------GGGS-TTEEEEE--CE
T ss_pred ccEEeeeeccccccc-------cccccCCcEEEecCCc
Confidence 999999997433332 2357889988865443
No 451
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=93.71 E-value=0.73 Score=46.82 Aligned_cols=149 Identities=15% Similarity=0.204 Sum_probs=97.4
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEE
Q 004892 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (724)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav 105 (724)
-++..-.=+.|..+++.+-.+ .+.+|+++..|+ +-.+|-.- ...++.. ....+ .++..-..|.|+.+
T Consensus 136 GSmGsVvGeki~ra~E~A~e~-k~P~v~f~aSGG-----ARMQEg~l-----SLMQMak-tsaAl-~~l~ea~lpyIsVL 202 (294)
T COG0777 136 GSMGSVVGEKITRAIERAIED-KLPLVLFSASGG-----ARMQEGIL-----SLMQMAK-TSAAL-KRLSEAGLPYISVL 202 (294)
T ss_pred cchhHHHHHHHHHHHHHHHHh-CCCEEEEecCcc-----hhHhHHHH-----HHHHHHH-HHHHH-HHHHhcCCceEEEe
Confidence 567777778888888888765 478888887653 22221000 0111111 11234 45778899999999
Q ss_pred Cccccch-hHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceec
Q 004892 106 EGLALGG-GLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV 184 (724)
Q Consensus 106 ~G~a~Gg-G~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv 184 (724)
..+..|| -..+++..|+.||.+.|.+||...++= -+.+...++.. --+++-.++.|+||.||
T Consensus 203 t~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRVI-------EQTire~LPeg----------fQ~aEfLlehG~iD~iv 265 (294)
T COG0777 203 TDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRVI-------EQTIREKLPEG----------FQTAEFLLEHGMIDMIV 265 (294)
T ss_pred cCCCccchhHhHHhccCeeecCcccccccCcchhh-------hhhhcccCCcc----------hhhHHHHHHcCCceeee
Confidence 9999998 579999999999998888876543310 01111111111 22577788999999999
Q ss_pred CcchHHHHHHHHHHHHHccC
Q 004892 185 TSEELLKVSRLWALDIAARR 204 (724)
Q Consensus 185 ~~~~l~~~a~~~a~~la~~~ 204 (724)
+..++......+...+...+
T Consensus 266 ~R~elr~tla~ll~~~~~~~ 285 (294)
T COG0777 266 HRDELRTTLASLLAKLTPQP 285 (294)
T ss_pred cHHHHHHHHHHHHHHhCCCC
Confidence 99999888777776655444
No 452
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=93.70 E-value=0.17 Score=47.04 Aligned_cols=72 Identities=18% Similarity=0.236 Sum_probs=54.0
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004892 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (724)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (724)
++|.|+|- ...|..+|..|.+.|..|++++.+...++ +.+++
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~-------------------------------------~~v~~ 71 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQ-------------------------------------SKVHD 71 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHH-------------------------------------HHHhh
Confidence 68999988 67899999999999999999986543222 24678
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (724)
||+||.++.-...++. +.+++++++++...
T Consensus 72 ADIVvsAtg~~~~i~~-------~~ikpGa~Vidvg~ 101 (140)
T cd05212 72 ADVVVVGSPKPEKVPT-------EWIKPGATVINCSP 101 (140)
T ss_pred CCEEEEecCCCCccCH-------HHcCCCCEEEEcCC
Confidence 9999999975433332 34789998875443
No 453
>PRK07326 short chain dehydrogenase; Provisional
Probab=93.61 E-value=0.15 Score=51.60 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=34.9
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 004892 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (724)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 348 (724)
++|.|+|+ |.+|..++..|++.|++|++.+|+++.++...
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~ 47 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAA 47 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHH
Confidence 57888886 99999999999999999999999987766543
No 454
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=93.48 E-value=0.14 Score=52.58 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=29.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCH
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 341 (724)
.||.|||+|..|+.++..|+..|. +++++|.+.
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 589999999999999999999997 788888653
No 455
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=93.47 E-value=0.053 Score=58.92 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=30.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCH
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 341 (724)
.||.|||+|..|+.++..|+..|. +++++|.+.
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 589999999999999999999998 799998764
No 456
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.44 E-value=0.22 Score=56.69 Aligned_cols=46 Identities=22% Similarity=0.190 Sum_probs=36.2
Q ss_pred CCCCCCCCCCCCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004892 296 PNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (724)
Q Consensus 296 ~~~~~~~~~~~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 342 (724)
|+...++.. ..-++|.|||+|..|.++|..|++.|++|+++|.++.
T Consensus 5 ~~~~~~~~~-~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 5 PGLTSWHSD-WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred cchhhcccC-cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 444444432 2346899999999999999999999999999997654
No 457
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=93.39 E-value=0.51 Score=53.67 Aligned_cols=166 Identities=17% Similarity=0.140 Sum_probs=99.5
Q ss_pred EEeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004892 18 ITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (724)
Q Consensus 18 i~l~~p~~--Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (724)
|.-|+|.. -+++++-.+...+++..+++. ++-+|.|.-. +.|..|-+-+ .....+...+++ .++.
T Consensus 298 iian~~~~~~G~~~~~~a~K~arfi~lcd~~-~iPlv~l~dt-pGf~~g~~~E----------~~g~~~~ga~~~-~a~~ 364 (493)
T PF01039_consen 298 IIANNPRQRAGALDPDGARKAARFIRLCDAF-NIPLVTLVDT-PGFMPGPEAE----------RAGIIRAGARLL-YALA 364 (493)
T ss_dssp EEEE-TTCGGGEB-HHHHHHHHHHHHHHHHT-T--EEEEEEE-CEB--SHHHH----------HTTHHHHHHHHH-HHHH
T ss_pred EEEeccccccccCChHHHHHHHHHHHHHHhh-CCceEEEeec-ccccccchhh----------hcchHHHHHHHH-HHHH
Confidence 44466643 379999999999999988863 6777777533 2354443321 222345555677 7799
Q ss_pred cCCCcEEEEECccccchhHHHHhhc----CEEEEeCCceeeCcccccCccCCcchhhhhcccc-------c--HH-HHHH
Q 004892 96 DCKKPIVAAVEGLALGGGLELAMGC----HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV-------G--LS-KAIE 161 (724)
Q Consensus 96 ~~~kp~Iaav~G~a~GgG~~lalac----D~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~-------G--~~-~a~~ 161 (724)
.++.|+|..|-|.+.|||......+ |+++|.++++++ .+++-+.+..+-+.- | .. ...+
T Consensus 365 ~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~-------vm~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~ 437 (493)
T PF01039_consen 365 EATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIG-------VMGPEGAASILYRDELEAAEAEGADPEAQRAE 437 (493)
T ss_dssp HH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEE-------SS-HHHHHHHHTHHHHHHSCHCCHSHHHHHHH
T ss_pred cCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceee-------ecChhhhheeeehhhhhhhhcccchhHHHHHH
Confidence 9999999999999999887555555 788777777766 443333333222110 0 00 0111
Q ss_pred HH-H-cCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHcc
Q 004892 162 MM-L-LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR 203 (724)
Q Consensus 162 l~-l-tg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 203 (724)
++ - .-+..++..+...|++|.|+++.+..........-+.++
T Consensus 438 ~~~~~~~~~~~~~~~a~~~~~D~ii~p~~tR~~l~~~l~~~~~~ 481 (493)
T PF01039_consen 438 KIAEYEDELSSPYRAASRGYVDDIIDPAETRKVLIAALEMLWQK 481 (493)
T ss_dssp HHHHHHHHHSSHHHHHHTTSSSEESSGGGHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHhC
Confidence 11 1 122258899999999999999999887776666544443
No 458
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=93.37 E-value=0.06 Score=59.05 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=30.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 340 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 340 (724)
+||.|||+|..|+.++..|++.|. +++++|.+
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 479999999999999999999998 79999987
No 459
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=93.36 E-value=0.4 Score=50.75 Aligned_cols=146 Identities=19% Similarity=0.217 Sum_probs=79.3
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCc---EEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC
Q 004892 309 RKVAVIGG-GLMGSGIATAHILNNIY---VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (724)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~la~~G~~---V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (724)
.||||+|+ |..|.-+...|.+..++ +.++......-++..+ ..... + .-.....+...
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~--------f~~~~-~---------~v~~~~~~~~~ 63 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIE--------FGGKS-I---------GVPEDAADEFV 63 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCcccc--------ccCcc-c---------cCccccccccc
Confidence 58999988 99999999999997553 4444332222111000 00000 0 00011133456
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCee---eEecC
Q 004892 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLL---EIVRT 461 (724)
Q Consensus 385 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lv---eii~~ 461 (724)
.+++|+|+-|.+ .++-+++..++.+ .++++++|+|...+..-.... +--.||-++...- -|+.+
T Consensus 64 ~~~~Divf~~ag--~~~s~~~~p~~~~---~G~~VIdnsSa~Rm~~DVPLV--------VPeVN~~~l~~~~~rg~Iian 130 (334)
T COG0136 64 FSDVDIVFFAAG--GSVSKEVEPKAAE---AGCVVIDNSSAFRMDPDVPLV--------VPEVNPEHLIDYQKRGFIIAN 130 (334)
T ss_pred cccCCEEEEeCc--hHHHHHHHHHHHH---cCCEEEeCCcccccCCCCCEe--------cCCcCHHHHHhhhhCCCEEEC
Confidence 779999999998 4444666666543 679999999987665211111 1111211111000 24444
Q ss_pred CC-CCHHHHHHHHHHHHHcCCeeEE
Q 004892 462 ER-TSAQVILDLMTVGKIIKKVPVV 485 (724)
Q Consensus 462 ~~-t~~e~~~~~~~l~~~lGk~~v~ 485 (724)
++ +....+-.+.++.+..|-.-|.
T Consensus 131 pNCst~~l~~aL~PL~~~~~i~~v~ 155 (334)
T COG0136 131 PNCSTIQLVLALKPLHDAFGIKRVV 155 (334)
T ss_pred CChHHHHHHHHHHHHHhhcCceEEE
Confidence 43 3456666777788777744333
No 460
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=93.34 E-value=0.064 Score=58.51 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=29.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 340 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 340 (724)
.+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 479999999999999999999997 89999987
No 461
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.32 E-value=0.23 Score=51.57 Aligned_cols=72 Identities=15% Similarity=0.237 Sum_probs=54.4
Q ss_pred ceEEEEcCC-CCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004892 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (724)
++|.|||-+ ..|.++|..|...|..|+.+..+...+. +.+++
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~-------------------------------------~~~~~ 195 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLK-------------------------------------AELRQ 195 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHH-------------------------------------HHHhh
Confidence 689999998 9999999999999999999987654322 24578
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (724)
||+||.|++-..-+.. ..+++++++++...
T Consensus 196 ADIvI~Avgk~~lv~~-------~~vk~GavVIDVgi 225 (279)
T PRK14178 196 ADILVSAAGKAGFITP-------DMVKPGATVIDVGI 225 (279)
T ss_pred CCEEEECCCcccccCH-------HHcCCCcEEEEeec
Confidence 9999999973322222 23589999886543
No 462
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.31 E-value=0.51 Score=53.75 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=32.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHH
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~ 343 (724)
++|.|+|+|..|.+.+..|...|++|+++|.+++.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~ 47 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDA 47 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 68999999999999999999999999999987654
No 463
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.25 E-value=0.21 Score=52.05 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=52.9
Q ss_pred ceEEEEcCCC-CcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004892 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (724)
++|+|||-+. .|.++|..|.+.|..|+++......+. +.++.
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~ 202 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLR-------------------------------------HHVRN 202 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHH-------------------------------------HHHhh
Confidence 6899999987 999999999999999999976532211 24678
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecC
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (724)
||+||.++.-..-+.. ..+++++++++..
T Consensus 203 ADIvi~avG~p~~v~~-------~~vk~gavVIDvG 231 (285)
T PRK10792 203 ADLLVVAVGKPGFIPG-------EWIKPGAIVIDVG 231 (285)
T ss_pred CCEEEEcCCCcccccH-------HHcCCCcEEEEcc
Confidence 9999999942122222 5678999887643
No 464
>PRK08223 hypothetical protein; Validated
Probab=93.19 E-value=0.24 Score=51.68 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=30.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCH
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 341 (724)
.||.|||+|-+|+.++..|+.+|. +++++|.+.
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 479999999999999999999998 788998764
No 465
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.17 E-value=0.31 Score=52.91 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=34.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHH
Q 004892 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (724)
Q Consensus 310 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~ 349 (724)
+|.|+|+|.+|.-.++.+...|. +|++.|+++++++.+.+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 79999999999998888888885 78888999999988754
No 466
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=93.17 E-value=0.14 Score=52.38 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=30.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHH
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE 342 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~ 342 (724)
.||.|+|+|.+|+.+|..|++.|. +++++|.+.-
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 579999999999999999999997 7888887653
No 467
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=93.10 E-value=0.36 Score=52.10 Aligned_cols=106 Identities=13% Similarity=0.033 Sum_probs=56.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CCcEEE-EeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHh-hcCcccccCc-cC
Q 004892 309 RKVAVIGGGLMGSGIATAHILN-NIYVVL-KEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNA-LKMLKGVLDY-SE 384 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~-G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~-~~~i~~~~~~-~~ 384 (724)
.||+|+|+|.||..++..+... +++|+. .|++++......+.. .++ -.+... ...... -..+....+. +.
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~--G~~---~~~~~~-~~~~~~~~~~i~V~~~~~el 75 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEK--GYP---LYVADP-EREKAFEEAGIPVAGTIEDL 75 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhc--CCC---ccccCc-cccccccCCceEEcCChhHh
Confidence 5899999999999999988764 567655 465654333221110 000 000000 000000 0123333344 34
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 004892 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (724)
Q Consensus 385 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (724)
+.++|+||+|.|. ..-.+..... +..++.++++++.
T Consensus 76 ~~~vDVVIdaT~~--~~~~e~a~~~---~~aGk~VI~~~~~ 111 (341)
T PRK04207 76 LEKADIVVDATPG--GVGAKNKELY---EKAGVKAIFQGGE 111 (341)
T ss_pred hccCCEEEECCCc--hhhHHHHHHH---HHCCCEEEEcCCC
Confidence 5789999999983 3333444333 3345666666664
No 468
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=93.10 E-value=0.56 Score=41.24 Aligned_cols=96 Identities=18% Similarity=0.186 Sum_probs=63.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHH--CCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccc-cCc---
Q 004892 309 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY--- 382 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~--- 382 (724)
.+|--||+|. +.++..+++ .|.+|+.+|.+++.++.+.++... .+ ...++++. .+.
T Consensus 3 ~~vLDlGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-------~~---------~~~~i~~~~~d~~~~ 64 (112)
T PF12847_consen 3 GRVLDLGCGT--GRLSIALARLFPGARVVGVDISPEMLEIARERAAE-------EG---------LSDRITFVQGDAEFD 64 (112)
T ss_dssp CEEEEETTTT--SHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH-------TT---------TTTTEEEEESCCHGG
T ss_pred CEEEEEcCcC--CHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh-------cC---------CCCCeEEEECccccC
Confidence 5789999998 344444555 899999999999999988765411 11 01233221 122
Q ss_pred -cCcCCCCEEEEcc-----cCChHHHHHHHHHHHhhCCCCcEEEec
Q 004892 383 -SEFKDVDMVIEAV-----IESVPLKQKIFSELEKACPPHCILATN 422 (724)
Q Consensus 383 -~~~~~aDlVIeav-----~e~~~~k~~v~~~l~~~~~~~~ii~s~ 422 (724)
+.....|+|+..- .-..+..+.+++++.+.++|+..++.+
T Consensus 65 ~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 65 PDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp TTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 3445689999866 112255678889999999988877543
No 469
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=93.08 E-value=0.11 Score=56.91 Aligned_cols=102 Identities=16% Similarity=0.195 Sum_probs=62.2
Q ss_pred CcceEEEEcC-CCCcHHHHHHHHHC-CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC
Q 004892 307 GVRKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (724)
Q Consensus 307 ~~~kI~VIG~-G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (724)
+++||+|+|+ |..|..+...|..+ +++|+.+.++..+-+.... ... .+..+... .+. ..+.+.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~----~~~-~l~~~~~~---------~~~-~~~~~~ 101 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGS----VFP-HLITQDLP---------NLV-AVKDAD 101 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchh----hCc-cccCcccc---------cee-cCCHHH
Confidence 4569999999 99999999999988 7799998775443211110 000 00001000 000 011133
Q ss_pred cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH
Q 004892 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (724)
Q Consensus 385 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~ 429 (724)
++++|+||.|+| ...-.++...+ ..++.|+++++.....
T Consensus 102 ~~~~DvVf~Alp--~~~s~~i~~~~----~~g~~VIDlSs~fRl~ 140 (381)
T PLN02968 102 FSDVDAVFCCLP--HGTTQEIIKAL----PKDLKIVDLSADFRLR 140 (381)
T ss_pred hcCCCEEEEcCC--HHHHHHHHHHH----hCCCEEEEcCchhccC
Confidence 688999999998 44445555544 3568888888876554
No 470
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=93.05 E-value=0.47 Score=54.26 Aligned_cols=41 Identities=15% Similarity=0.060 Sum_probs=35.5
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 004892 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (724)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 349 (724)
+.|.|.|+ |.+|..++..|++.|++|++++|+.+.++...+
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~ 122 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQ 122 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 46778887 999999999999999999999999988766544
No 471
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=93.01 E-value=0.21 Score=51.71 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=30.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCH
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 341 (724)
.+|.|||+|.+|+.+|..|++.|. +++++|.+.
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 579999999999999999999994 899999764
No 472
>PLN00016 RNA-binding protein; Provisional
Probab=93.00 E-value=0.25 Score=54.32 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=33.2
Q ss_pred CcceEEEE----cC-CCCcHHHHHHHHHCCCcEEEEeCCHHH
Q 004892 307 GVRKVAVI----GG-GLMGSGIATAHILNNIYVVLKEVNSEY 343 (724)
Q Consensus 307 ~~~kI~VI----G~-G~mG~~iA~~la~~G~~V~l~d~~~~~ 343 (724)
.++||.|+ |+ |.+|..++..|.+.||+|++++|+++.
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 34789999 76 999999999999999999999998765
No 473
>CHL00194 ycf39 Ycf39; Provisional
Probab=93.00 E-value=0.16 Score=54.19 Aligned_cols=35 Identities=23% Similarity=0.211 Sum_probs=31.9
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHH
Q 004892 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYL 344 (724)
Q Consensus 310 kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~ 344 (724)
||.|.|+ |.+|+.++..|.+.||+|++.+|+++..
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~ 37 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKA 37 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHh
Confidence 7999996 9999999999999999999999997643
No 474
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.00 E-value=0.91 Score=51.10 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=32.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCH
Q 004892 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 341 (724)
-++|.|+|+|.+|.++|..|++.|++|+++|++.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3689999999999999999999999999999986
No 475
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=92.98 E-value=0.29 Score=51.68 Aligned_cols=88 Identities=22% Similarity=0.211 Sum_probs=61.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (724)
+++.|.|.|-.|.++|..+.-.|.+|++++++|-.+-++. ++.....+-.+++..+
T Consensus 210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~------------------------MdGf~V~~m~~Aa~~g 265 (420)
T COG0499 210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAA------------------------MDGFRVMTMEEAAKTG 265 (420)
T ss_pred ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHh------------------------hcCcEEEEhHHhhhcC
Confidence 5788889999999999999999999999999997543321 1223333333677889
Q ss_pred CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 004892 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (724)
Q Consensus 389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (724)
|++|.|.-..--+..+ ....+++++|++ |...
T Consensus 266 DifiT~TGnkdVi~~e----h~~~MkDgaIl~-N~GH 297 (420)
T COG0499 266 DIFVTATGNKDVIRKE----HFEKMKDGAILA-NAGH 297 (420)
T ss_pred CEEEEccCCcCccCHH----HHHhccCCeEEe-cccc
Confidence 9999998643333333 334467787764 5443
No 476
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=92.93 E-value=0.2 Score=54.30 Aligned_cols=100 Identities=17% Similarity=0.139 Sum_probs=58.4
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccc-cCcc-
Q 004892 309 RKVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDYS- 383 (724)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~- 383 (724)
.||+|||+ |.+|..+...|.++ +++++ +++.+...-+...+ .. +.+.. . ....+. .+.+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~----~~------~~l~~-----~-~~~~~~~~~~~~ 64 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSE----VH------PHLRG-----L-VDLNLEPIDEEE 64 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHH----hC------ccccc-----c-CCceeecCCHHH
Confidence 37999999 99999999999977 66777 55655432111110 00 00000 0 001111 1222
Q ss_pred CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH
Q 004892 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (724)
Q Consensus 384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~ 429 (724)
.+.++|+||.|+|. ..-.++..++. ..++.|+++++...+.
T Consensus 65 ~~~~~DvVf~alP~--~~s~~~~~~~~---~~G~~VIDlS~~fR~~ 105 (346)
T TIGR01850 65 IAEDADVVFLALPH--GVSAELAPELL---AAGVKVIDLSADFRLK 105 (346)
T ss_pred hhcCCCEEEECCCc--hHHHHHHHHHH---hCCCEEEeCChhhhcC
Confidence 23589999999994 34445555543 3578888988876654
No 477
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=92.93 E-value=0.39 Score=46.92 Aligned_cols=88 Identities=14% Similarity=0.114 Sum_probs=57.4
Q ss_pred cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccc--cC---
Q 004892 308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV--LD--- 381 (724)
Q Consensus 308 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~--- 381 (724)
-++|+|||- ...|.++|..|.+.|..|+++|++.-..-. ..+.+ +-+.+ .+
T Consensus 62 GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~-------------~~~~~----------~hs~t~~~~~~~ 118 (197)
T cd01079 62 GKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFT-------------RGESI----------RHEKHHVTDEEA 118 (197)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccc-------------ccccc----------ccccccccchhh
Confidence 378999998 577999999999999999999876432210 00000 00001 11
Q ss_pred -c-cCcCCCCEEEEcccCChH-HHHHHHHHHHhhCCCCcEEEecCCC
Q 004892 382 -Y-SEFKDVDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNTST 425 (724)
Q Consensus 382 -~-~~~~~aDlVIeav~e~~~-~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (724)
+ +.++.||+||.|++-.-- ++. +.+++++++++....
T Consensus 119 ~l~~~~~~ADIVIsAvG~~~~~i~~-------d~ik~GavVIDVGi~ 158 (197)
T cd01079 119 MTLDCLSQSDVVITGVPSPNYKVPT-------ELLKDGAICINFASI 158 (197)
T ss_pred HHHHHhhhCCEEEEccCCCCCccCH-------HHcCCCcEEEEcCCC
Confidence 2 457899999999973332 333 346789998875544
No 478
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=92.92 E-value=0.085 Score=58.65 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=31.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004892 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (724)
Q Consensus 310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 342 (724)
+|+|||+|.+|.++|..|++.|++|+++|++..
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 799999999999999999999999999999754
No 479
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.86 E-value=0.25 Score=54.83 Aligned_cols=100 Identities=14% Similarity=0.055 Sum_probs=62.8
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHC---CC----cEEEEeC--CHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccc
Q 004892 309 RKVAVIGG-GLMGSGIATAHILN---NI----YVVLKEV--NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG 378 (724)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~la~~---G~----~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~ 378 (724)
-+|+|-|+ |.+|-++...+++. |. .++++|+ +.+.++...-+++..... .+..+..
T Consensus 124 ~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~p--------------ll~~v~i 189 (452)
T cd05295 124 LQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFP--------------LLRGISV 189 (452)
T ss_pred eEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHh--------------hcCCcEE
Confidence 36999988 89999998888874 43 5788999 566655443333332111 1122222
Q ss_pred -ccCccCcCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCC-CcEEEec
Q 004892 379 -VLDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPP-HCILATN 422 (724)
Q Consensus 379 -~~~~~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~-~~ii~s~ 422 (724)
+++++++++||+||.+.- .+..+.+++.+.|.++.++ ..|++..
T Consensus 190 ~~~~~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~ 249 (452)
T cd05295 190 TTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAG 249 (452)
T ss_pred EECCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEe
Confidence 455689999999998762 1334555666677777763 3444433
No 480
>PRK07825 short chain dehydrogenase; Provisional
Probab=92.83 E-value=0.24 Score=51.49 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=35.1
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 004892 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (724)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 348 (724)
++|.|.|+ |.+|..++..|++.|++|++.+|+++.++...
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 46 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETA 46 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 57888887 89999999999999999999999998876543
No 481
>PRK07454 short chain dehydrogenase; Provisional
Probab=92.82 E-value=0.23 Score=50.53 Aligned_cols=41 Identities=15% Similarity=0.113 Sum_probs=35.4
Q ss_pred CcceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004892 307 GVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (724)
Q Consensus 307 ~~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 347 (724)
+++++.|.|+ |.+|..++..|++.|++|++.+|+++..+..
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 46 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEAL 46 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 4578889986 9999999999999999999999998765543
No 482
>PRK05868 hypothetical protein; Validated
Probab=92.81 E-value=0.081 Score=57.99 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=33.2
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHH
Q 004892 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (724)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~ 343 (724)
|++|.|||+|.-|...|..|++.|++|+++|++++.
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 578999999999999999999999999999988653
No 483
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=92.79 E-value=0.17 Score=51.34 Aligned_cols=31 Identities=29% Similarity=0.248 Sum_probs=28.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEE-EEeC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVV-LKEV 339 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~-l~d~ 339 (724)
++|+|.|.|.+|..+|..|.+.|..|+ +.|.
T Consensus 32 ~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 32 ARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 689999999999999999999999998 6677
No 484
>PRK07831 short chain dehydrogenase; Provisional
Probab=92.77 E-value=0.28 Score=50.67 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=37.1
Q ss_pred cceEEEEcC-C-CCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 004892 308 VRKVAVIGG-G-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (724)
Q Consensus 308 ~~kI~VIG~-G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 351 (724)
-+++.|.|+ | .+|.+++..|++.|++|++.+++++.++...+.+
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~ 62 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADEL 62 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 367889997 6 5999999999999999999999988877665444
No 485
>PRK07236 hypothetical protein; Provisional
Probab=92.72 E-value=0.11 Score=57.29 Aligned_cols=37 Identities=24% Similarity=0.075 Sum_probs=33.8
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004892 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (724)
Q Consensus 306 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 342 (724)
++..+|.|||+|.-|...|..|++.|++|+++++++.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4457899999999999999999999999999999864
No 486
>PRK07774 short chain dehydrogenase; Provisional
Probab=92.66 E-value=0.22 Score=50.80 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=34.7
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 004892 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (724)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 348 (724)
++|.|.|+ |.+|..++..|++.|++|++.+|+++..+...
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~ 47 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVA 47 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 57888887 99999999999999999999999987665543
No 487
>PRK08328 hypothetical protein; Provisional
Probab=92.65 E-value=0.11 Score=53.00 Aligned_cols=35 Identities=29% Similarity=0.343 Sum_probs=30.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHH
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEY 343 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~ 343 (724)
.||.|||+|..|+.++..|++.|. +++++|.+.-.
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve 63 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPE 63 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccC
Confidence 479999999999999999999998 79999876533
No 488
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=92.64 E-value=0.046 Score=56.99 Aligned_cols=31 Identities=16% Similarity=0.363 Sum_probs=28.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC
Q 004892 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 340 (724)
Q Consensus 310 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 340 (724)
||.|||+|..|+.+|..|+..|. +++++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 68999999999999999999998 68888854
No 489
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.59 E-value=0.28 Score=51.07 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=52.7
Q ss_pred ceEEEEcCCC-CcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004892 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (724)
Q Consensus 309 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (724)
++|+|||-+. .|.++|..|.+.|..|+++......+. +.+++
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~ 207 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLK-------------------------------------KYTLD 207 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHH-------------------------------------HHHhh
Confidence 6899999987 999999999999999999984332111 23578
Q ss_pred CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004892 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (724)
Q Consensus 388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (724)
||+||.|+.-.--+. ...+++++++++..+
T Consensus 208 ADIvv~AvG~p~~i~-------~~~vk~gavVIDvGi 237 (287)
T PRK14176 208 ADILVVATGVKHLIK-------ADMVKEGAVIFDVGI 237 (287)
T ss_pred CCEEEEccCCccccC-------HHHcCCCcEEEEecc
Confidence 999999875222222 235789999886544
No 490
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=92.58 E-value=0.098 Score=42.09 Aligned_cols=30 Identities=27% Similarity=0.290 Sum_probs=27.3
Q ss_pred EEcCCCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004892 313 VIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (724)
Q Consensus 313 VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 342 (724)
|||+|.-|.+.|..|++.|++|++++++..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 899999999999999999999999998764
No 491
>PRK08267 short chain dehydrogenase; Provisional
Probab=92.53 E-value=0.18 Score=51.94 Aligned_cols=40 Identities=15% Similarity=0.133 Sum_probs=35.1
Q ss_pred cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004892 308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (724)
Q Consensus 308 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 347 (724)
|++|.|+|+ |.+|..++..|++.|++|++++++++.++..
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 41 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAAL 41 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 467889986 9999999999999999999999998876654
No 492
>PRK06196 oxidoreductase; Provisional
Probab=92.53 E-value=0.29 Score=52.17 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=35.9
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 004892 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (724)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 350 (724)
++|.|.|+ |.+|..+|..|++.|++|++.+|+++.++...+.
T Consensus 27 k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~ 69 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAG 69 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 56788887 8999999999999999999999998877665443
No 493
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.47 E-value=0.34 Score=49.34 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=35.2
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 004892 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (724)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 348 (724)
++|.|+|+ |.+|..++..|++.|++|++.+|+++..+...
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~ 46 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVA 46 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 57899987 89999999999999999999999997765543
No 494
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.46 E-value=2.2 Score=44.52 Aligned_cols=88 Identities=16% Similarity=0.169 Sum_probs=56.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHH-hhcCcccccCccCcC
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANN-ALKMLKGVLDYSEFK 386 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~-~~~~i~~~~~~~~~~ 386 (724)
..|+|.|+|..|.+.++-...+|. +++.+|+|+++.+.+.+--. ..-+.+.+... ..+.|.--++ .
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGa--------Te~iNp~d~~~~i~evi~EmTd----g 261 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGA--------TEFINPKDLKKPIQEVIIEMTD----G 261 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCc--------ceecChhhccccHHHHHHHHhc----C
Confidence 579999999999999999988887 79999999999888753100 00111111111 1111211111 6
Q ss_pred CCCEEEEcccCChHHHHHHHHHH
Q 004892 387 DVDMVIEAVIESVPLKQKIFSEL 409 (724)
Q Consensus 387 ~aDlVIeav~e~~~~k~~v~~~l 409 (724)
+.|+-+||+- +.++.++-+...
T Consensus 262 GvDysfEc~G-~~~~m~~al~s~ 283 (375)
T KOG0022|consen 262 GVDYSFECIG-NVSTMRAALESC 283 (375)
T ss_pred CceEEEEecC-CHHHHHHHHHHh
Confidence 7899999986 566655555443
No 495
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=92.40 E-value=0.19 Score=54.09 Aligned_cols=93 Identities=20% Similarity=0.187 Sum_probs=58.6
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCcE---EEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccccc-Ccc
Q 004892 309 RKVAVIGG-GLMGSGIATAHILNNIYV---VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DYS 383 (724)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~la~~G~~V---~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~ 383 (724)
.||+|||+ |..|..+...|.+.||++ ....++.+.-+... . .+ ..+...+ +..
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~----------~-~g-----------~~i~v~d~~~~ 59 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELS----------F-KG-----------KELKVEDLTTF 59 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeee----------e-CC-----------ceeEEeeCCHH
Confidence 58999998 999999999999988864 55554433211110 0 00 0111111 113
Q ss_pred CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH
Q 004892 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 428 (724)
Q Consensus 384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~ 428 (724)
.++++|+||.|+| ...-+++..++. ..+++|+++++....
T Consensus 60 ~~~~vDvVf~A~g--~g~s~~~~~~~~---~~G~~VIDlS~~~R~ 99 (334)
T PRK14874 60 DFSGVDIALFSAG--GSVSKKYAPKAA---AAGAVVIDNSSAFRM 99 (334)
T ss_pred HHcCCCEEEECCC--hHHHHHHHHHHH---hCCCEEEECCchhhc
Confidence 4578999999998 555566665543 356788888876644
No 496
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=92.34 E-value=0.33 Score=48.81 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=29.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCH
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 341 (724)
++|+|.|.|.+|..+|..|.+.|. .|.+.|.+.
T Consensus 24 ~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 689999999999999999999988 566678876
No 497
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=92.33 E-value=1 Score=47.17 Aligned_cols=35 Identities=31% Similarity=0.381 Sum_probs=32.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHH
Q 004892 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (724)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~ 343 (724)
+.|-|||+|+-|+--|..+++.|++|.+++-.+.+
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 56999999999999999999999999999987764
No 498
>PRK05866 short chain dehydrogenase; Provisional
Probab=92.30 E-value=0.27 Score=51.89 Aligned_cols=41 Identities=15% Similarity=0.154 Sum_probs=35.7
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 004892 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (724)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 349 (724)
++|.|.|+ |.+|..+|..|++.|++|++.+|+++.++...+
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~ 82 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVAD 82 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 57888887 999999999999999999999999887766543
No 499
>PRK07890 short chain dehydrogenase; Provisional
Probab=92.30 E-value=0.29 Score=50.28 Aligned_cols=41 Identities=24% Similarity=0.143 Sum_probs=35.0
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 004892 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (724)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 349 (724)
++|.|.|+ |.+|..+|..|++.|++|++.+|+++.++...+
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAA 47 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 56888876 899999999999999999999999887665443
No 500
>PRK06057 short chain dehydrogenase; Provisional
Probab=92.29 E-value=0.25 Score=50.73 Aligned_cols=40 Identities=20% Similarity=0.216 Sum_probs=35.0
Q ss_pred cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004892 308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (724)
Q Consensus 308 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 347 (724)
-++|.|+|+ |.+|..++..|++.|++|++.++++...+..
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~ 47 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAA 47 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 367999988 9999999999999999999999998765543
Done!