Query 004893
Match_columns 724
No_of_seqs 413 out of 1384
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 14:38:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004893.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004893hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05557 MAD: Mitotic checkpoi 100.0 1.3E-71 2.7E-76 651.2 18.4 524 186-722 142-722 (722)
2 KOG4593 Mitotic checkpoint pro 100.0 2E-61 4.4E-66 519.5 72.0 673 1-724 1-716 (716)
3 KOG4593 Mitotic checkpoint pro 99.8 3.5E-15 7.5E-20 162.9 56.2 470 203-724 160-655 (716)
4 KOG0161 Myosin class II heavy 99.8 2.5E-14 5.4E-19 175.4 67.9 472 57-547 1021-1552(1930)
5 PF01576 Myosin_tail_1: Myosin 99.6 3.7E-17 7.9E-22 193.6 0.0 545 58-645 27-593 (859)
6 PRK02224 chromosome segregatio 99.5 1.8E-07 3.9E-12 114.0 73.2 17 427-443 539-555 (880)
7 KOG0161 Myosin class II heavy 99.5 1.5E-07 3.3E-12 116.8 71.1 208 58-266 896-1113(1930)
8 PRK02224 chromosome segregatio 99.4 1.8E-06 4E-11 105.3 71.0 8 629-636 744-751 (880)
9 TIGR00606 rad50 rad50. This fa 99.4 1.1E-06 2.3E-11 110.8 69.9 212 419-640 745-965 (1311)
10 TIGR02169 SMC_prok_A chromosom 99.4 6.8E-06 1.5E-10 103.7 72.3 29 614-642 1017-1045(1164)
11 TIGR02168 SMC_prok_B chromosom 99.4 4.2E-06 9E-11 105.7 69.9 66 58-123 241-306 (1179)
12 TIGR02168 SMC_prok_B chromosom 99.4 2.9E-06 6.3E-11 107.1 67.7 21 599-619 916-936 (1179)
13 KOG4674 Uncharacterized conser 99.3 3.1E-06 6.7E-11 103.7 62.0 31 597-627 1352-1382(1822)
14 COG1196 Smc Chromosome segrega 99.3 1.1E-05 2.4E-10 100.6 69.1 44 600-643 993-1040(1163)
15 TIGR00606 rad50 rad50. This fa 99.3 1.2E-05 2.5E-10 101.7 68.1 73 461-533 971-1045(1311)
16 PRK03918 chromosome segregatio 99.3 2.1E-05 4.5E-10 96.3 76.5 9 680-688 816-824 (880)
17 KOG4674 Uncharacterized conser 99.3 2.2E-05 4.8E-10 96.5 69.5 84 186-269 801-891 (1822)
18 PRK03918 chromosome segregatio 99.2 4.9E-05 1.1E-09 93.0 69.9 28 365-392 455-482 (880)
19 COG1196 Smc Chromosome segrega 99.1 0.00016 3.4E-09 90.5 70.4 20 600-619 886-905 (1163)
20 PF10174 Cast: RIM-binding pro 99.1 0.0001 2.2E-09 85.9 57.9 112 465-579 470-582 (775)
21 PF10174 Cast: RIM-binding pro 99.1 0.00011 2.4E-09 85.5 57.0 48 217-264 359-406 (775)
22 PF12128 DUF3584: Protein of u 99.0 0.00035 7.5E-09 87.5 65.4 27 366-392 604-630 (1201)
23 TIGR02169 SMC_prok_A chromosom 99.0 0.00061 1.3E-08 86.1 76.9 32 363-394 675-706 (1164)
24 PRK01156 chromosome segregatio 98.9 0.00064 1.4E-08 83.3 64.0 36 312-347 516-551 (895)
25 PF01576 Myosin_tail_1: Myosin 98.9 4.4E-10 9.5E-15 133.8 0.0 58 212-269 332-389 (859)
26 PRK01156 chromosome segregatio 98.8 0.0012 2.6E-08 80.8 70.4 21 327-347 425-445 (895)
27 PF12128 DUF3584: Protein of u 98.7 0.003 6.5E-08 79.3 71.9 40 598-637 895-934 (1201)
28 KOG0996 Structural maintenance 98.7 0.002 4.2E-08 75.8 65.9 131 136-266 404-537 (1293)
29 KOG0971 Microtubule-associated 98.7 0.0014 3E-08 74.7 44.4 229 60-300 228-481 (1243)
30 KOG0976 Rho/Rac1-interacting s 98.6 0.0026 5.7E-08 71.4 51.5 30 64-93 35-64 (1265)
31 KOG0971 Microtubule-associated 98.6 0.0033 7.2E-08 71.6 43.4 24 619-642 829-852 (1243)
32 PF07888 CALCOCO1: Calcium bin 98.5 0.0048 1E-07 68.6 43.3 36 499-534 421-456 (546)
33 KOG0976 Rho/Rac1-interacting s 98.5 0.006 1.3E-07 68.6 59.8 61 225-288 245-305 (1265)
34 PF07888 CALCOCO1: Calcium bin 98.4 0.0073 1.6E-07 67.1 48.0 18 415-432 442-459 (546)
35 PF05557 MAD: Mitotic checkpoi 98.4 7.5E-07 1.6E-11 105.5 8.9 22 558-579 509-530 (722)
36 KOG4643 Uncharacterized coiled 98.4 0.012 2.7E-07 68.1 52.0 61 43-110 157-217 (1195)
37 PRK04778 septation ring format 98.3 0.017 3.6E-07 66.8 51.7 341 216-576 106-465 (569)
38 KOG0977 Nuclear envelope prote 98.3 0.0015 3.3E-08 72.4 31.0 277 236-533 42-334 (546)
39 PF15070 GOLGA2L5: Putative go 98.3 0.019 4.1E-07 66.0 47.4 76 558-637 420-505 (617)
40 KOG0933 Structural maintenance 98.2 0.026 5.6E-07 65.7 59.4 73 460-532 787-859 (1174)
41 PF00261 Tropomyosin: Tropomyo 98.0 0.0076 1.6E-07 61.4 28.6 198 65-267 3-214 (237)
42 PF05483 SCP-1: Synaptonemal c 98.0 0.043 9.3E-07 61.5 69.3 18 559-576 608-625 (786)
43 PF05483 SCP-1: Synaptonemal c 98.0 0.046 1E-06 61.3 59.1 22 502-523 629-650 (786)
44 KOG0977 Nuclear envelope prote 98.0 0.035 7.5E-07 61.9 34.1 38 463-500 345-382 (546)
45 KOG0933 Structural maintenance 97.9 0.082 1.8E-06 61.8 66.3 38 599-636 1009-1047(1174)
46 PF00038 Filament: Intermediat 97.9 0.047 1E-06 58.2 38.2 132 309-443 5-142 (312)
47 KOG0996 Structural maintenance 97.9 0.11 2.4E-06 61.8 66.8 39 598-636 1110-1148(1293)
48 PRK04778 septation ring format 97.9 0.11 2.4E-06 60.1 50.8 63 464-533 445-507 (569)
49 KOG0964 Structural maintenance 97.8 0.14 3.1E-06 59.6 61.0 122 146-267 309-449 (1200)
50 PF05701 WEMBL: Weak chloropla 97.8 0.13 2.9E-06 58.6 57.9 49 70-118 27-75 (522)
51 KOG4643 Uncharacterized coiled 97.8 0.16 3.6E-06 59.3 57.6 32 605-636 647-678 (1195)
52 PF14662 CCDC155: Coiled-coil 97.7 0.032 7E-07 53.3 24.6 170 305-504 19-188 (193)
53 PF00038 Filament: Intermediat 97.7 0.095 2.1E-06 55.9 39.2 38 226-263 72-109 (312)
54 KOG4673 Transcription factor T 97.7 0.14 3.1E-06 57.2 55.8 57 64-120 403-461 (961)
55 PF05701 WEMBL: Weak chloropla 97.7 0.17 3.7E-06 57.8 58.6 50 61-110 32-81 (522)
56 PF00261 Tropomyosin: Tropomyo 97.7 0.031 6.7E-07 57.0 25.7 43 224-266 164-206 (237)
57 KOG0994 Extracellular matrix g 97.6 0.26 5.7E-06 58.3 46.7 16 559-574 1731-1746(1758)
58 KOG0250 DNA repair protein RAD 97.6 0.29 6.2E-06 58.3 63.3 72 462-533 736-807 (1074)
59 PRK11637 AmiB activator; Provi 97.6 0.068 1.5E-06 59.7 28.9 60 67-126 44-103 (428)
60 PRK11637 AmiB activator; Provi 97.5 0.15 3.3E-06 56.8 30.0 69 60-128 44-112 (428)
61 PRK04863 mukB cell division pr 97.3 0.94 2E-05 57.7 66.2 37 546-582 929-965 (1486)
62 KOG0978 E3 ubiquitin ligase in 97.3 0.5 1.1E-05 54.5 54.6 47 58-104 148-194 (698)
63 KOG0994 Extracellular matrix g 97.3 0.65 1.4E-05 55.2 50.1 63 558-627 1688-1753(1758)
64 COG0419 SbcC ATPase involved i 97.3 0.87 1.9E-05 56.0 69.1 23 58-80 173-195 (908)
65 PF04849 HAP1_N: HAP1 N-termin 97.3 0.31 6.8E-06 50.5 28.6 48 215-262 206-253 (306)
66 PF09730 BicD: Microtubule-ass 97.3 0.66 1.4E-05 54.1 43.1 26 275-300 129-154 (717)
67 PF09726 Macoilin: Transmembra 97.1 0.54 1.2E-05 55.2 30.0 27 144-170 488-514 (697)
68 KOG0963 Transcription factor/C 97.1 0.82 1.8E-05 51.3 48.0 83 364-446 184-270 (629)
69 PF06160 EzrA: Septation ring 97.1 0.97 2.1E-05 52.2 54.6 350 164-532 135-502 (560)
70 KOG0612 Rho-associated, coiled 97.0 1.3 2.8E-05 53.5 43.7 6 6-11 353-358 (1317)
71 KOG1029 Endocytic adaptor prot 97.0 0.94 2E-05 51.7 32.4 99 408-513 483-581 (1118)
72 KOG0964 Structural maintenance 97.0 1.1 2.4E-05 52.6 63.6 47 603-650 989-1040(1200)
73 PF09726 Macoilin: Transmembra 97.0 0.69 1.5E-05 54.3 29.6 72 370-448 588-659 (697)
74 PF06160 EzrA: Septation ring 97.0 1.1 2.3E-05 51.8 50.2 88 302-392 387-474 (560)
75 PHA02562 46 endonuclease subun 97.0 0.59 1.3E-05 54.2 29.3 102 190-295 299-400 (562)
76 PF05622 HOOK: HOOK protein; 96.9 0.00054 1.2E-08 81.3 3.7 26 48-73 59-84 (713)
77 KOG0995 Centromere-associated 96.9 0.97 2.1E-05 50.3 41.4 14 291-304 439-452 (581)
78 COG1579 Zn-ribbon protein, pos 96.9 0.26 5.6E-06 49.5 21.7 23 162-184 93-115 (239)
79 PF05622 HOOK: HOOK protein; 96.9 0.00057 1.2E-08 81.1 3.4 23 599-621 623-645 (713)
80 PHA02562 46 endonuclease subun 96.9 0.36 7.9E-06 56.0 26.1 16 667-682 544-559 (562)
81 PF14915 CCDC144C: CCDC144C pr 96.8 0.81 1.8E-05 46.9 41.7 39 146-184 72-110 (305)
82 PF09730 BicD: Microtubule-ass 96.7 1.9 4E-05 50.4 57.9 52 215-266 265-316 (717)
83 PF05667 DUF812: Protein of un 96.7 1.8 3.9E-05 49.9 35.2 30 217-246 449-478 (594)
84 PF14662 CCDC155: Coiled-coil 96.6 0.68 1.5E-05 44.5 24.7 184 323-533 6-189 (193)
85 PF14915 CCDC144C: CCDC144C pr 96.6 1 2.2E-05 46.2 36.6 84 358-448 217-301 (305)
86 KOG0250 DNA repair protein RAD 96.6 2.6 5.7E-05 50.5 66.0 64 359-422 658-721 (1074)
87 PRK09039 hypothetical protein; 96.6 0.32 6.9E-06 52.4 21.0 23 558-580 136-158 (343)
88 KOG0946 ER-Golgi vesicle-tethe 96.4 2.1 4.6E-05 49.4 26.5 43 80-122 653-695 (970)
89 COG1340 Uncharacterized archae 96.3 1.6 3.5E-05 45.0 28.6 40 80-119 30-69 (294)
90 PF15619 Lebercilin: Ciliary p 96.3 1.2 2.6E-05 43.6 26.5 38 214-251 156-193 (194)
91 PF12718 Tropomyosin_1: Tropom 96.2 1 2.3E-05 41.9 20.8 61 68-128 5-65 (143)
92 PF04849 HAP1_N: HAP1 N-termin 96.1 2.2 4.9E-05 44.4 25.1 9 7-15 5-13 (306)
93 PF05010 TACC: Transforming ac 96.0 1.8 3.8E-05 42.8 30.8 37 227-263 166-202 (207)
94 PF05667 DUF812: Protein of un 96.0 4.4 9.4E-05 46.8 32.2 58 58-115 323-380 (594)
95 PF10473 CENP-F_leu_zip: Leuci 96.0 0.99 2.1E-05 41.6 17.6 72 408-493 42-113 (140)
96 COG5185 HEC1 Protein involved 95.8 3.5 7.6E-05 44.7 32.5 58 71-128 265-325 (622)
97 KOG1029 Endocytic adaptor prot 95.7 5.5 0.00012 45.9 36.2 73 191-263 445-520 (1118)
98 PF15070 GOLGA2L5: Putative go 95.7 5.9 0.00013 46.0 53.6 60 58-120 6-65 (617)
99 COG0419 SbcC ATPase involved i 95.6 8.2 0.00018 47.6 62.6 26 227-252 408-433 (908)
100 KOG0978 E3 ubiquitin ligase in 95.6 6.3 0.00014 45.7 60.5 63 58-120 43-105 (698)
101 KOG0946 ER-Golgi vesicle-tethe 95.6 6.4 0.00014 45.7 30.7 21 330-350 756-776 (970)
102 PF09728 Taxilin: Myosin-like 95.5 4.1 8.9E-05 43.2 40.9 56 328-392 247-302 (309)
103 KOG0999 Microtubule-associated 95.4 5.7 0.00012 44.0 47.6 61 386-446 321-381 (772)
104 COG4942 Membrane-bound metallo 95.3 5.4 0.00012 43.5 27.7 37 210-246 212-248 (420)
105 COG3883 Uncharacterized protei 95.3 3.9 8.5E-05 41.7 22.4 63 58-120 33-95 (265)
106 KOG0804 Cytoplasmic Zn-finger 95.2 2.6 5.7E-05 45.5 19.7 33 25-60 292-324 (493)
107 KOG0963 Transcription factor/C 95.2 7.4 0.00016 44.0 44.1 13 334-346 346-358 (629)
108 KOG0980 Actin-binding protein 95.1 9.3 0.0002 44.9 35.0 44 63-106 344-387 (980)
109 PF09755 DUF2046: Uncharacteri 95.0 5.4 0.00012 41.6 32.9 38 357-394 22-59 (310)
110 PF05010 TACC: Transforming ac 94.8 4.6 9.9E-05 40.0 30.1 41 215-255 161-201 (207)
111 PF12718 Tropomyosin_1: Tropom 94.7 3.7 8.1E-05 38.2 20.5 21 225-245 118-138 (143)
112 PRK09039 hypothetical protein; 94.7 2.5 5.4E-05 45.5 18.6 22 367-388 44-65 (343)
113 COG4942 Membrane-bound metallo 94.5 8.7 0.00019 41.9 29.3 13 277-289 234-246 (420)
114 KOG0995 Centromere-associated 94.4 11 0.00024 42.4 40.1 36 45-80 213-252 (581)
115 KOG0962 DNA repair protein RAD 94.3 19 0.0004 44.8 64.4 110 463-577 791-903 (1294)
116 KOG0962 DNA repair protein RAD 94.2 19 0.00042 44.6 62.1 40 54-93 572-611 (1294)
117 PF09728 Taxilin: Myosin-like 94.1 9.4 0.0002 40.5 35.7 48 202-249 108-155 (309)
118 KOG4673 Transcription factor T 93.9 15 0.00031 42.0 60.9 20 305-324 609-628 (961)
119 KOG1003 Actin filament-coating 93.8 6.7 0.00015 37.8 18.4 22 328-349 7-28 (205)
120 smart00787 Spc7 Spc7 kinetocho 93.5 12 0.00026 39.7 27.3 19 67-85 74-92 (312)
121 COG3883 Uncharacterized protei 93.3 11 0.00023 38.7 28.0 64 65-128 33-96 (265)
122 KOG0980 Actin-binding protein 93.3 21 0.00046 42.1 42.9 24 226-249 463-486 (980)
123 PF09789 DUF2353: Uncharacteri 93.2 13 0.00028 39.2 23.3 71 463-533 157-227 (319)
124 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.1 7 0.00015 35.8 19.1 18 167-184 75-92 (132)
125 TIGR01843 type_I_hlyD type I s 92.5 20 0.00044 39.6 23.4 6 68-73 86-91 (423)
126 TIGR03185 DNA_S_dndD DNA sulfu 92.1 30 0.00066 40.9 38.1 20 226-245 395-414 (650)
127 PRK11281 hypothetical protein; 91.7 44 0.00095 41.8 41.5 74 214-289 134-207 (1113)
128 KOG1003 Actin filament-coating 91.6 14 0.00029 35.8 25.3 114 146-263 62-178 (205)
129 PF12325 TMF_TATA_bd: TATA ele 91.4 10 0.00022 34.0 15.2 48 70-117 16-63 (120)
130 COG4477 EzrA Negative regulato 91.3 28 0.00061 38.9 43.6 21 465-485 445-465 (570)
131 TIGR03185 DNA_S_dndD DNA sulfu 91.0 39 0.00085 40.0 36.7 24 328-351 394-417 (650)
132 KOG0018 Structural maintenance 90.8 45 0.00099 40.4 61.3 35 600-634 963-1001(1141)
133 TIGR01843 type_I_hlyD type I s 90.7 31 0.00066 38.1 23.7 6 61-66 86-91 (423)
134 PF14197 Cep57_CLD_2: Centroso 90.5 3.8 8.1E-05 32.9 9.5 65 464-528 2-66 (69)
135 PF10481 CENP-F_N: Cenp-F N-te 90.4 11 0.00023 38.3 14.7 33 360-392 16-48 (307)
136 KOG2391 Vacuolar sorting prote 90.3 12 0.00026 39.2 15.4 6 43-48 198-203 (365)
137 KOG1853 LIS1-interacting prote 89.5 24 0.00053 35.3 21.3 34 229-262 91-124 (333)
138 PF08614 ATG16: Autophagy prot 89.5 3.3 7.1E-05 40.8 10.6 64 460-523 116-179 (194)
139 PF09755 DUF2046: Uncharacteri 89.4 30 0.00065 36.2 36.1 137 328-485 109-247 (310)
140 PF15619 Lebercilin: Ciliary p 88.9 25 0.00054 34.5 27.1 38 82-119 17-54 (194)
141 PF10168 Nup88: Nuclear pore c 88.8 39 0.00085 40.2 20.5 32 97-128 571-602 (717)
142 PF09787 Golgin_A5: Golgin sub 88.7 50 0.0011 37.8 37.8 30 60-89 106-135 (511)
143 PF08317 Spc7: Spc7 kinetochor 88.4 39 0.00085 36.1 28.6 49 395-443 154-202 (325)
144 KOG2991 Splicing regulator [RN 88.1 31 0.00067 34.6 27.0 38 226-263 268-305 (330)
145 KOG0979 Structural maintenance 87.9 71 0.0015 38.6 35.1 15 26-41 602-616 (1072)
146 COG4477 EzrA Negative regulato 87.2 56 0.0012 36.7 47.0 53 334-388 377-429 (570)
147 PF15066 CAGE1: Cancer-associa 86.9 53 0.0011 36.1 27.7 36 85-120 318-353 (527)
148 PF08614 ATG16: Autophagy prot 86.8 8 0.00017 38.0 11.3 66 61-126 72-137 (194)
149 PF04111 APG6: Autophagy prote 86.4 15 0.00032 39.1 13.8 64 417-488 8-71 (314)
150 PF11932 DUF3450: Protein of u 85.9 45 0.00097 34.2 21.6 72 635-710 163-241 (251)
151 KOG0999 Microtubule-associated 85.8 66 0.0014 36.1 48.0 28 504-531 480-507 (772)
152 PF06008 Laminin_I: Laminin Do 85.6 48 0.001 34.3 27.5 18 232-249 188-205 (264)
153 PF11559 ADIP: Afadin- and alp 85.4 32 0.0007 32.2 19.4 52 77-128 52-103 (151)
154 PF13870 DUF4201: Domain of un 84.5 40 0.00087 32.5 22.6 118 319-444 7-131 (177)
155 KOG1937 Uncharacterized conser 84.4 68 0.0015 35.1 32.8 25 29-53 204-228 (521)
156 COG4026 Uncharacterized protei 84.3 20 0.00044 35.2 12.1 37 81-117 132-168 (290)
157 PRK04863 mukB cell division pr 84.2 1.5E+02 0.0031 38.7 74.2 19 330-348 805-823 (1486)
158 PF07106 TBPIP: Tat binding pr 84.0 20 0.00043 34.4 12.4 64 504-580 74-137 (169)
159 KOG1899 LAR transmembrane tyro 83.6 88 0.0019 35.7 21.5 32 226-257 228-259 (861)
160 KOG1899 LAR transmembrane tyro 83.4 89 0.0019 35.7 20.1 27 100-126 134-160 (861)
161 COG4372 Uncharacterized protei 83.3 69 0.0015 34.3 30.6 57 61-117 79-135 (499)
162 TIGR03007 pepcterm_ChnLen poly 83.1 90 0.002 35.5 24.4 32 360-391 202-233 (498)
163 COG4372 Uncharacterized protei 82.0 77 0.0017 34.0 32.6 48 70-117 74-121 (499)
164 PF00769 ERM: Ezrin/radixin/mo 81.5 67 0.0015 32.9 17.6 45 76-120 4-48 (246)
165 COG5185 HEC1 Protein involved 81.3 91 0.002 34.3 39.3 25 311-335 403-427 (622)
166 PF13851 GAS: Growth-arrest sp 80.8 62 0.0013 32.0 24.8 22 191-212 115-136 (201)
167 KOG0249 LAR-interacting protei 80.7 1E+02 0.0022 35.9 17.5 37 229-265 216-252 (916)
168 PF04111 APG6: Autophagy prote 80.4 37 0.00079 36.2 13.8 32 59-90 5-36 (314)
169 PF06785 UPF0242: Uncharacteri 80.2 82 0.0018 33.1 18.6 6 194-199 166-171 (401)
170 PLN02939 transferase, transfer 79.8 1.6E+02 0.0035 36.2 32.5 43 278-320 328-370 (977)
171 KOG1937 Uncharacterized conser 79.7 1E+02 0.0022 33.9 39.2 20 42-62 213-232 (521)
172 KOG0992 Uncharacterized conser 79.6 1.1E+02 0.0023 34.1 48.6 19 333-351 404-422 (613)
173 PRK10884 SH3 domain-containing 78.1 32 0.00069 34.1 11.6 22 234-255 137-158 (206)
174 KOG3850 Predicted membrane pro 77.9 1E+02 0.0023 33.0 20.7 37 57-93 254-290 (455)
175 PF06005 DUF904: Protein of un 77.5 37 0.00079 27.5 10.9 53 70-122 11-63 (72)
176 PF10481 CENP-F_N: Cenp-F N-te 76.2 96 0.0021 31.7 18.8 73 372-444 63-135 (307)
177 PF10498 IFT57: Intra-flagella 75.5 1.3E+02 0.0027 32.7 18.7 13 81-93 195-207 (359)
178 PF07111 HCR: Alpha helical co 75.3 1.7E+02 0.0037 34.1 62.7 25 551-576 471-495 (739)
179 PRK10929 putative mechanosensi 74.1 2.4E+02 0.0053 35.4 45.4 19 276-294 175-193 (1109)
180 PF09789 DUF2353: Uncharacteri 73.6 1.3E+02 0.0028 32.0 29.2 34 413-446 191-224 (319)
181 PF04156 IncA: IncA protein; 73.5 92 0.002 30.2 17.5 16 78-93 89-104 (191)
182 PF10146 zf-C4H2: Zinc finger- 73.2 92 0.002 31.5 13.6 21 511-531 83-103 (230)
183 PLN02939 transferase, transfer 73.2 2.4E+02 0.0051 34.8 27.8 22 466-487 375-396 (977)
184 PF15066 CAGE1: Cancer-associa 73.0 1.6E+02 0.0034 32.6 28.4 53 162-218 387-439 (527)
185 PF09304 Cortex-I_coil: Cortex 72.5 66 0.0014 28.1 14.2 13 169-181 13-25 (107)
186 PF10498 IFT57: Intra-flagella 71.7 1.5E+02 0.0034 32.1 17.7 42 80-121 216-257 (359)
187 PF05615 THOC7: Tho complex su 71.7 40 0.00087 31.1 10.1 70 45-114 35-104 (139)
188 PF08826 DMPK_coil: DMPK coile 71.4 47 0.001 26.0 9.3 32 152-183 5-36 (61)
189 PF07106 TBPIP: Tat binding pr 71.2 24 0.00052 33.8 8.7 63 468-530 73-137 (169)
190 PF06005 DUF904: Protein of un 70.0 58 0.0013 26.4 10.7 28 504-531 41-68 (72)
191 PF10146 zf-C4H2: Zinc finger- 69.4 1.3E+02 0.0029 30.4 14.2 14 167-180 90-103 (230)
192 KOG0249 LAR-interacting protei 69.3 2.3E+02 0.005 33.1 21.6 90 328-417 166-257 (916)
193 PF14073 Cep57_CLD: Centrosome 69.2 1.1E+02 0.0024 29.4 21.1 83 216-304 58-140 (178)
194 PF13514 AAA_27: AAA domain 69.0 3.2E+02 0.007 34.7 72.5 32 57-88 243-274 (1111)
195 PF04012 PspA_IM30: PspA/IM30 68.9 1.3E+02 0.0028 30.0 19.9 38 226-263 95-132 (221)
196 PF04156 IncA: IncA protein; 68.6 1.2E+02 0.0026 29.5 17.1 41 64-104 82-122 (191)
197 PF06785 UPF0242: Uncharacteri 68.5 1.6E+02 0.0035 31.0 20.3 66 468-533 121-186 (401)
198 PF11559 ADIP: Afadin- and alp 67.1 1.1E+02 0.0024 28.5 15.0 54 73-126 55-108 (151)
199 PF12777 MT: Microtubule-bindi 67.0 19 0.00041 38.9 7.8 71 58-128 209-279 (344)
200 PF10267 Tmemb_cc2: Predicted 66.6 2.1E+02 0.0045 31.5 17.4 32 62-93 211-242 (395)
201 KOG4360 Uncharacterized coiled 66.3 2.3E+02 0.0049 31.8 16.2 32 95-126 202-233 (596)
202 PF04642 DUF601: Protein of un 66.0 33 0.00072 34.3 8.3 47 44-90 145-199 (311)
203 TIGR01005 eps_transp_fam exopo 65.9 3E+02 0.0066 33.2 25.3 22 82-103 199-220 (754)
204 PF12329 TMF_DNA_bd: TATA elem 65.5 73 0.0016 25.9 10.5 22 465-486 3-24 (74)
205 PF14197 Cep57_CLD_2: Centroso 64.9 72 0.0016 25.6 9.5 15 558-572 53-67 (69)
206 PF10186 Atg14: UV radiation r 64.7 1.8E+02 0.004 30.2 21.0 38 50-88 8-45 (302)
207 PRK02119 hypothetical protein; 63.7 53 0.0012 26.7 7.9 52 471-529 6-57 (73)
208 PF04582 Reo_sigmaC: Reovirus 63.5 16 0.00034 38.6 6.0 46 489-534 113-158 (326)
209 PRK15422 septal ring assembly 63.4 83 0.0018 25.8 10.4 60 61-120 9-68 (79)
210 PF07798 DUF1640: Protein of u 63.0 1.5E+02 0.0032 28.6 18.5 36 170-205 118-153 (177)
211 KOG0982 Centrosomal protein Nu 62.8 2.4E+02 0.0052 30.9 26.3 22 561-582 405-426 (502)
212 KOG0804 Cytoplasmic Zn-finger 62.6 2.5E+02 0.0054 31.0 17.4 9 175-183 420-428 (493)
213 PF15450 DUF4631: Domain of un 62.3 2.7E+02 0.0059 31.4 62.1 58 58-115 15-72 (531)
214 KOG4360 Uncharacterized coiled 62.0 2.7E+02 0.0058 31.3 18.6 71 191-265 234-304 (596)
215 PRK04406 hypothetical protein; 61.4 69 0.0015 26.2 8.2 51 471-528 8-58 (75)
216 PF09304 Cortex-I_coil: Cortex 61.2 1.1E+02 0.0025 26.7 15.6 46 68-113 7-52 (107)
217 PF14073 Cep57_CLD: Centrosome 60.4 1.6E+02 0.0036 28.3 19.4 28 419-446 65-92 (178)
218 PF06156 DUF972: Protein of un 60.4 68 0.0015 28.2 8.5 54 63-116 1-54 (107)
219 KOG0288 WD40 repeat protein Ti 59.9 2.6E+02 0.0057 30.5 17.1 67 61-127 4-70 (459)
220 KOG4809 Rab6 GTPase-interactin 59.7 3E+02 0.0066 31.1 35.1 46 218-263 424-469 (654)
221 PRK00295 hypothetical protein; 59.6 77 0.0017 25.3 8.0 50 473-529 4-53 (68)
222 PF15290 Syntaphilin: Golgi-lo 59.0 2.2E+02 0.0048 29.3 14.3 102 230-347 69-171 (305)
223 COG5509 Uncharacterized small 58.5 36 0.00079 26.1 5.5 57 33-102 1-57 (65)
224 PF12329 TMF_DNA_bd: TATA elem 58.4 1E+02 0.0022 25.1 10.3 56 67-122 2-57 (74)
225 PF10205 KLRAQ: Predicted coil 58.4 1.2E+02 0.0027 26.2 10.5 63 64-126 6-68 (102)
226 PF02183 HALZ: Homeobox associ 57.9 48 0.001 24.2 6.0 40 493-532 3-42 (45)
227 PF10212 TTKRSYEDQ: Predicted 57.8 3.3E+02 0.0071 30.9 19.2 196 296-501 297-514 (518)
228 PRK04325 hypothetical protein; 57.4 81 0.0018 25.7 8.0 51 472-529 7-57 (74)
229 PF13851 GAS: Growth-arrest sp 57.4 2E+02 0.0044 28.4 29.4 20 232-251 146-165 (201)
230 PF10805 DUF2730: Protein of u 57.3 1.1E+02 0.0024 26.8 9.5 55 460-514 35-91 (106)
231 COG2433 Uncharacterized conser 57.3 2.7E+02 0.0059 32.0 14.4 20 165-184 474-493 (652)
232 PF09738 DUF2051: Double stran 57.2 2.6E+02 0.0056 29.6 13.9 20 228-247 225-244 (302)
233 PF04102 SlyX: SlyX; InterPro 57.1 64 0.0014 25.8 7.3 50 473-529 3-52 (69)
234 PF03962 Mnd1: Mnd1 family; I 57.0 2E+02 0.0043 28.1 14.5 64 507-579 67-130 (188)
235 TIGR03007 pepcterm_ChnLen poly 56.4 3.4E+02 0.0075 30.7 24.9 39 358-396 250-288 (498)
236 PF09787 Golgin_A5: Golgin sub 56.4 3.6E+02 0.0077 30.9 35.7 29 315-343 403-431 (511)
237 PF04582 Reo_sigmaC: Reovirus 56.3 25 0.00054 37.2 6.0 38 495-532 112-149 (326)
238 TIGR03495 phage_LysB phage lys 56.3 1.6E+02 0.0036 27.0 11.0 18 558-575 81-98 (135)
239 PF10226 DUF2216: Uncharacteri 55.7 2E+02 0.0044 27.8 14.4 31 356-386 17-47 (195)
240 PRK04406 hypothetical protein; 54.7 1E+02 0.0023 25.1 8.2 49 80-128 7-55 (75)
241 PF08647 BRE1: BRE1 E3 ubiquit 54.7 1.4E+02 0.003 25.6 13.0 48 73-120 13-60 (96)
242 KOG2991 Splicing regulator [RN 54.4 2.5E+02 0.0054 28.5 23.2 74 460-533 236-309 (330)
243 PRK15422 septal ring assembly 53.9 1.2E+02 0.0027 24.8 11.1 70 463-532 7-76 (79)
244 smart00787 Spc7 Spc7 kinetocho 53.7 3E+02 0.0065 29.2 28.9 32 60-91 60-91 (312)
245 PRK02793 phi X174 lysis protei 53.7 1E+02 0.0022 25.0 7.9 51 472-529 6-56 (72)
246 PRK09841 cryptic autophosphory 53.7 3.8E+02 0.0083 32.2 16.4 31 228-258 266-296 (726)
247 PRK02119 hypothetical protein; 53.5 1.1E+02 0.0025 24.8 8.2 52 463-514 5-56 (73)
248 PF09738 DUF2051: Double stran 53.1 3E+02 0.0066 29.1 15.3 8 67-74 81-88 (302)
249 PF08172 CASP_C: CASP C termin 52.9 2.1E+02 0.0045 29.4 11.9 31 403-433 5-35 (248)
250 PF12777 MT: Microtubule-bindi 52.7 36 0.00077 36.8 6.9 72 55-126 199-270 (344)
251 PRK00736 hypothetical protein; 52.7 1E+02 0.0023 24.6 7.8 50 473-529 4-53 (68)
252 PF10458 Val_tRNA-synt_C: Valy 52.6 1E+02 0.0022 24.4 7.7 64 507-578 2-65 (66)
253 PF04102 SlyX: SlyX; InterPro 52.5 87 0.0019 25.1 7.4 49 467-515 4-52 (69)
254 COG3074 Uncharacterized protei 52.5 1.2E+02 0.0025 24.2 10.6 62 465-526 9-70 (79)
255 PLN03229 acetyl-coenzyme A car 51.9 4.8E+02 0.01 31.0 23.4 18 67-84 98-115 (762)
256 PRK00295 hypothetical protein; 51.8 1.2E+02 0.0027 24.2 8.2 48 467-514 5-52 (68)
257 PF06818 Fez1: Fez1; InterPro 51.2 2.5E+02 0.0055 27.6 21.7 61 65-125 12-72 (202)
258 PLN03188 kinesin-12 family pro 50.8 6.3E+02 0.014 32.0 37.8 56 283-338 1154-1210(1320)
259 PF13166 AAA_13: AAA domain 50.6 5.1E+02 0.011 30.9 26.6 20 54-74 256-276 (712)
260 PRK13169 DNA replication intia 49.5 1.3E+02 0.0028 26.6 8.5 53 63-115 1-53 (110)
261 TIGR02449 conserved hypothetic 49.1 1.3E+02 0.0029 23.8 8.9 54 479-532 5-58 (65)
262 PF10805 DUF2730: Protein of u 49.1 1.7E+02 0.0036 25.7 9.2 52 77-128 35-88 (106)
263 KOG4603 TBP-1 interacting prot 48.5 1.6E+02 0.0035 27.9 9.2 60 468-527 80-141 (201)
264 PF10205 KLRAQ: Predicted coil 48.2 1.9E+02 0.004 25.2 10.5 65 469-533 7-71 (102)
265 PRK11519 tyrosine kinase; Prov 48.1 5.6E+02 0.012 30.7 16.6 28 229-256 267-294 (719)
266 KOG2264 Exostosin EXT1L [Signa 46.7 2.2E+02 0.0048 32.2 11.4 67 56-122 72-138 (907)
267 KOG4603 TBP-1 interacting prot 46.0 2.7E+02 0.0059 26.5 15.4 25 557-581 121-145 (201)
268 PRK02793 phi X174 lysis protei 45.5 1.6E+02 0.0035 23.8 8.2 46 83-128 7-52 (72)
269 PF08826 DMPK_coil: DMPK coile 45.3 1.5E+02 0.0032 23.2 8.4 44 400-443 14-57 (61)
270 PF07889 DUF1664: Protein of u 44.6 2.4E+02 0.0053 25.6 12.8 34 162-195 40-73 (126)
271 TIGR01005 eps_transp_fam exopo 44.5 6.4E+02 0.014 30.4 24.2 10 213-222 321-330 (754)
272 PF13514 AAA_27: AAA domain 44.5 7.7E+02 0.017 31.3 63.7 45 50-94 340-384 (1111)
273 PF15188 CCDC-167: Coiled-coil 44.3 1.3E+02 0.0029 25.2 7.3 56 461-516 6-64 (85)
274 PF05529 Bap31: B-cell recepto 44.0 1.9E+02 0.0042 28.1 10.0 68 464-531 122-190 (192)
275 PF15397 DUF4618: Domain of un 43.9 3.8E+02 0.0082 27.6 28.3 32 174-205 65-96 (258)
276 TIGR02449 conserved hypothetic 43.8 1.6E+02 0.0035 23.3 9.0 59 471-529 4-62 (65)
277 PF06156 DUF972: Protein of un 43.7 1.7E+02 0.0037 25.7 8.4 25 505-529 32-56 (107)
278 PRK00846 hypothetical protein; 43.3 1.9E+02 0.0041 23.8 8.1 52 471-529 10-61 (77)
279 PF04899 MbeD_MobD: MbeD/MobD 43.1 1.8E+02 0.0038 23.5 9.8 50 202-251 15-64 (70)
280 PF10267 Tmemb_cc2: Predicted 43.0 4.9E+02 0.011 28.6 20.7 27 67-93 209-235 (395)
281 PRK09343 prefoldin subunit bet 42.9 2.5E+02 0.0054 25.2 12.8 40 597-636 77-116 (121)
282 COG1382 GimC Prefoldin, chaper 42.3 2.6E+02 0.0056 25.1 13.4 31 215-245 77-107 (119)
283 KOG0245 Kinesin-like protein [ 42.0 78 0.0017 38.4 7.6 97 543-642 344-448 (1221)
284 KOG4807 F-actin binding protei 42.0 4.8E+02 0.01 28.2 30.3 25 75-99 296-320 (593)
285 PRK04325 hypothetical protein; 41.9 1.8E+02 0.0039 23.7 7.7 46 83-128 8-53 (74)
286 KOG1962 B-cell receptor-associ 41.8 1.3E+02 0.0029 29.9 8.2 34 92-125 152-185 (216)
287 KOG2751 Beclin-like protein [S 41.6 5.2E+02 0.011 28.5 19.5 25 33-57 78-103 (447)
288 PF06705 SF-assemblin: SF-asse 41.2 4E+02 0.0087 27.1 32.9 21 227-247 166-186 (247)
289 PF15294 Leu_zip: Leucine zipp 41.0 4.4E+02 0.0095 27.4 15.3 20 190-209 190-209 (278)
290 PF11365 DUF3166: Protein of u 40.7 2.4E+02 0.0052 24.3 10.7 84 492-579 5-89 (96)
291 TIGR01010 BexC_CtrB_KpsE polys 40.5 5E+02 0.011 28.0 17.8 27 549-576 240-266 (362)
292 PRK13729 conjugal transfer pil 40.1 1.2E+02 0.0026 33.9 8.3 72 45-120 48-119 (475)
293 PRK00736 hypothetical protein; 39.9 1.7E+02 0.0037 23.3 7.2 43 86-128 7-49 (68)
294 PF05377 FlaC_arch: Flagella a 39.9 1.5E+02 0.0033 22.6 6.3 16 78-93 8-23 (55)
295 PF05266 DUF724: Protein of un 39.8 3.7E+02 0.0081 26.3 15.5 9 45-53 27-35 (190)
296 PRK00846 hypothetical protein; 39.8 2.1E+02 0.0046 23.5 8.1 47 82-128 11-57 (77)
297 PF04012 PspA_IM30: PspA/IM30 39.8 3.9E+02 0.0085 26.5 22.6 46 75-120 28-73 (221)
298 PF06818 Fez1: Fez1; InterPro 39.7 3.8E+02 0.0083 26.4 17.5 60 63-122 17-76 (202)
299 PF10458 Val_tRNA-synt_C: Valy 39.3 1.1E+02 0.0023 24.2 5.9 59 560-618 5-66 (66)
300 PF04728 LPP: Lipoprotein leuc 39.3 1.8E+02 0.0038 22.4 7.8 24 464-487 7-30 (56)
301 PF15397 DUF4618: Domain of un 39.1 4.5E+02 0.0098 27.0 29.0 8 194-201 124-131 (258)
302 PF15290 Syntaphilin: Golgi-lo 38.5 4.7E+02 0.01 27.1 14.4 65 50-123 55-119 (305)
303 KOG2129 Uncharacterized conser 38.4 5.7E+02 0.012 28.0 28.1 28 416-443 199-226 (552)
304 KOG1962 B-cell receptor-associ 38.4 1.6E+02 0.0034 29.4 8.0 6 7-12 24-29 (216)
305 TIGR03752 conj_TIGR03752 integ 38.1 4.4E+02 0.0095 29.6 12.2 9 45-53 48-56 (472)
306 KOG3809 Microtubule-binding pr 38.0 5.9E+02 0.013 28.1 16.8 21 21-41 402-422 (583)
307 PF13166 AAA_13: AAA domain 38.0 7.6E+02 0.017 29.4 25.4 11 690-700 638-648 (712)
308 TIGR03545 conserved hypothetic 37.9 2E+02 0.0042 33.3 10.1 30 550-579 210-239 (555)
309 PF13870 DUF4201: Domain of un 37.9 3.7E+02 0.008 25.7 22.4 22 65-86 8-29 (177)
310 PF02403 Seryl_tRNA_N: Seryl-t 37.9 1.8E+02 0.0038 25.3 7.8 15 78-92 37-51 (108)
311 TIGR01000 bacteriocin_acc bact 37.8 6.3E+02 0.014 28.3 22.9 25 325-349 97-121 (457)
312 PF06120 Phage_HK97_TLTM: Tail 37.4 5.2E+02 0.011 27.3 19.9 70 365-443 44-113 (301)
313 PF10446 DUF2457: Protein of u 37.2 31 0.00068 37.6 3.3 16 3-18 285-300 (458)
314 PF04912 Dynamitin: Dynamitin 37.0 6E+02 0.013 27.9 20.9 18 58-75 241-258 (388)
315 KOG2751 Beclin-like protein [S 36.8 6.2E+02 0.013 28.0 14.2 31 416-446 141-171 (447)
316 KOG0982 Centrosomal protein Nu 36.7 6.1E+02 0.013 27.9 23.7 27 226-252 329-355 (502)
317 TIGR02338 gimC_beta prefoldin, 36.5 3E+02 0.0064 24.2 12.4 34 599-632 75-108 (110)
318 TIGR03752 conj_TIGR03752 integ 36.4 3.2E+02 0.0069 30.6 10.8 73 460-532 59-139 (472)
319 KOG4005 Transcription factor X 35.8 3.2E+02 0.007 27.4 9.6 58 471-528 87-144 (292)
320 TIGR02894 DNA_bind_RsfA transc 35.7 2.6E+02 0.0056 26.5 8.6 30 97-126 110-139 (161)
321 KOG4438 Centromere-associated 35.0 6.5E+02 0.014 27.7 39.1 23 98-120 145-167 (446)
322 PRK13169 DNA replication intia 34.9 2.8E+02 0.0061 24.5 8.3 24 505-528 32-55 (110)
323 PF04728 LPP: Lipoprotein leuc 34.4 2.1E+02 0.0046 21.9 8.1 35 79-113 5-39 (56)
324 PF12795 MscS_porin: Mechanose 34.3 5E+02 0.011 26.2 23.2 24 161-184 116-139 (240)
325 PF02183 HALZ: Homeobox associ 33.9 1.9E+02 0.0041 21.1 6.2 34 77-110 5-38 (45)
326 PF01763 Herpes_UL6: Herpesvir 33.7 1.5E+02 0.0033 33.9 8.2 41 58-98 365-405 (557)
327 PF07058 Myosin_HC-like: Myosi 33.2 5.9E+02 0.013 26.7 14.0 111 462-579 2-135 (351)
328 TIGR00634 recN DNA repair prot 32.8 8.3E+02 0.018 28.3 25.3 23 325-347 273-295 (563)
329 PF10850 DUF2653: Protein of u 32.8 86 0.0019 26.5 4.5 82 626-723 8-90 (91)
330 COG1382 GimC Prefoldin, chaper 32.7 3.7E+02 0.008 24.2 12.8 34 600-637 79-112 (119)
331 KOG4657 Uncharacterized conser 32.7 5.2E+02 0.011 25.9 24.3 77 629-713 151-230 (246)
332 PF12178 INCENP_N: Chromosome 32.6 49 0.0011 23.1 2.5 20 614-633 4-23 (38)
333 PRK09841 cryptic autophosphory 32.2 8.2E+02 0.018 29.4 14.6 49 161-210 342-390 (726)
334 TIGR01000 bacteriocin_acc bact 32.1 7.7E+02 0.017 27.6 23.9 15 74-88 101-115 (457)
335 PRK11519 tyrosine kinase; Prov 32.0 9.6E+02 0.021 28.8 15.6 48 162-210 343-390 (719)
336 PF05588 Botulinum_HA-17: Clos 31.5 47 0.001 29.6 2.9 30 647-684 8-37 (146)
337 KOG2196 Nuclear porin [Nuclear 31.3 5.7E+02 0.012 25.9 24.1 65 54-125 69-133 (254)
338 PF11221 Med21: Subunit 21 of 31.3 2.3E+02 0.005 26.3 7.8 72 461-532 70-141 (144)
339 PF08172 CASP_C: CASP C termin 31.0 5.9E+02 0.013 26.0 11.6 39 213-251 84-122 (248)
340 PRK10803 tol-pal system protei 31.0 2.7E+02 0.0058 28.8 9.0 7 477-483 43-49 (263)
341 PRK13729 conjugal transfer pil 30.5 3.5E+02 0.0076 30.4 10.0 11 73-83 79-89 (475)
342 KOG3564 GTPase-activating prot 30.0 4.8E+02 0.01 29.1 10.6 89 175-267 13-101 (604)
343 PF00769 ERM: Ezrin/radixin/mo 29.6 6.2E+02 0.014 25.8 16.9 11 277-287 185-195 (246)
344 PF06428 Sec2p: GDP/GTP exchan 29.3 63 0.0014 28.1 3.3 20 226-245 12-31 (100)
345 TIGR03017 EpsF chain length de 29.3 8.2E+02 0.018 27.1 23.1 191 68-263 162-369 (444)
346 KOG2010 Double stranded RNA bi 29.3 2.8E+02 0.0061 29.2 8.3 43 83-125 146-188 (405)
347 PF15294 Leu_zip: Leucine zipp 28.6 6.9E+02 0.015 26.0 20.2 13 245-257 262-274 (278)
348 COG0497 RecN ATPase involved i 28.5 9.6E+02 0.021 27.7 22.2 201 57-261 165-374 (557)
349 PF10243 MIP-T3: Microtubule-b 28.5 19 0.00041 41.5 0.0 43 78-120 436-478 (539)
350 PF07989 Microtub_assoc: Micro 28.4 3.3E+02 0.0071 22.2 8.3 67 559-628 7-73 (75)
351 cd00632 Prefoldin_beta Prefold 28.2 4E+02 0.0086 23.1 12.0 32 363-394 7-38 (105)
352 KOG2264 Exostosin EXT1L [Signa 28.2 3.2E+02 0.0068 31.1 9.0 49 70-118 93-141 (907)
353 PF05384 DegS: Sensor protein 28.2 5.2E+02 0.011 24.5 21.5 48 61-108 11-58 (159)
354 PRK10803 tol-pal system protei 28.0 3.5E+02 0.0076 27.9 9.2 61 460-520 40-100 (263)
355 KOG4809 Rab6 GTPase-interactin 28.0 9.5E+02 0.021 27.4 36.4 100 190-289 331-436 (654)
356 PF05678 VQ: VQ motif; InterP 27.9 46 0.00099 22.2 1.7 16 624-639 11-26 (31)
357 PRK10869 recombination and rep 27.7 1E+03 0.022 27.6 26.2 54 232-285 299-352 (553)
358 TIGR02231 conserved hypothetic 27.0 6.1E+02 0.013 29.1 11.9 11 30-40 26-36 (525)
359 PF02403 Seryl_tRNA_N: Seryl-t 26.5 4.2E+02 0.0092 22.9 9.1 72 359-434 26-97 (108)
360 PRK10929 putative mechanosensi 26.4 1.4E+03 0.031 28.9 46.3 24 357-380 335-358 (1109)
361 PRK10361 DNA recombination pro 26.1 9.9E+02 0.021 27.0 24.1 152 63-215 36-190 (475)
362 TIGR01069 mutS2 MutS2 family p 26.0 1.2E+03 0.027 28.1 17.0 9 52-60 467-475 (771)
363 PRK11020 hypothetical protein; 25.9 4.7E+02 0.01 23.2 8.8 65 558-635 4-68 (118)
364 PF12761 End3: Actin cytoskele 25.7 6.5E+02 0.014 24.7 12.1 48 271-318 129-184 (195)
365 PF02994 Transposase_22: L1 tr 25.4 2E+02 0.0044 31.4 7.2 41 505-550 161-201 (370)
366 PF15254 CCDC14: Coiled-coil d 25.2 1.2E+03 0.027 27.8 25.8 20 296-315 531-550 (861)
367 PF07200 Mod_r: Modifier of ru 25.1 5.5E+02 0.012 23.7 12.8 63 56-118 27-89 (150)
368 KOG0972 Huntingtin interacting 25.1 7.9E+02 0.017 25.6 13.5 149 409-584 218-367 (384)
369 KOG2129 Uncharacterized conser 25.1 9.4E+02 0.02 26.4 22.4 13 24-36 28-40 (552)
370 PF05278 PEARLI-4: Arabidopsis 25.1 7.8E+02 0.017 25.5 13.8 62 472-533 198-259 (269)
371 PF04420 CHD5: CHD5-like prote 25.0 1.9E+02 0.0041 27.4 6.1 74 558-638 39-113 (161)
372 PF14992 TMCO5: TMCO5 family 24.8 8.1E+02 0.018 25.5 19.7 29 416-444 68-96 (280)
373 PF03962 Mnd1: Mnd1 family; I 24.4 6.7E+02 0.014 24.4 12.4 12 334-345 144-155 (188)
374 PF14257 DUF4349: Domain of un 24.2 4.1E+02 0.0089 27.2 9.0 9 29-37 43-51 (262)
375 TIGR02231 conserved hypothetic 24.1 7E+02 0.015 28.5 11.8 36 310-348 73-108 (525)
376 PF04859 DUF641: Plant protein 24.0 2.4E+02 0.0051 25.8 6.1 54 472-525 78-131 (131)
377 PF14282 FlxA: FlxA-like prote 23.8 4.9E+02 0.011 22.7 8.5 23 466-488 18-40 (106)
378 PF04871 Uso1_p115_C: Uso1 / p 23.8 5.8E+02 0.012 23.5 12.6 8 437-444 103-110 (136)
379 PF10234 Cluap1: Clusterin-ass 23.7 8.3E+02 0.018 25.3 15.5 44 100-144 171-214 (267)
380 PF04508 Pox_A_type_inc: Viral 23.4 1.2E+02 0.0027 18.7 2.8 16 469-484 3-18 (23)
381 PF14282 FlxA: FlxA-like prote 23.4 4.3E+02 0.0092 23.1 7.6 18 99-116 52-69 (106)
382 PF04912 Dynamitin: Dynamitin 23.1 1E+03 0.022 26.1 27.4 36 357-392 241-277 (388)
383 COG2900 SlyX Uncharacterized p 22.5 4.2E+02 0.0091 21.4 8.2 45 84-128 8-52 (72)
384 KOG3850 Predicted membrane pro 22.4 1E+03 0.022 25.9 15.0 28 58-85 262-289 (455)
385 PF10211 Ax_dynein_light: Axon 22.2 7.4E+02 0.016 24.1 13.0 90 57-146 99-189 (189)
386 PF04871 Uso1_p115_C: Uso1 / p 21.9 6.3E+02 0.014 23.2 15.5 31 232-262 80-110 (136)
387 PF10224 DUF2205: Predicted co 21.9 4.7E+02 0.01 21.7 7.2 37 493-529 28-64 (80)
388 PF08581 Tup_N: Tup N-terminal 21.8 4.6E+02 0.01 21.7 11.5 21 468-488 5-25 (79)
389 COG4467 Regulator of replicati 21.6 5.6E+02 0.012 22.5 7.7 42 63-104 1-42 (114)
390 PF12808 Mto2_bdg: Micro-tubul 21.4 2.6E+02 0.0057 21.1 4.8 22 557-578 27-48 (52)
391 PF05278 PEARLI-4: Arabidopsis 21.1 9.4E+02 0.02 24.9 10.9 40 89-128 198-237 (269)
392 KOG0239 Kinesin (KAR3 subfamil 21.0 1.4E+03 0.031 27.1 19.2 19 229-247 300-318 (670)
393 KOG0240 Kinesin (SMY1 subfamil 21.0 1.3E+03 0.028 26.6 23.6 8 33-40 304-311 (607)
394 PF06428 Sec2p: GDP/GTP exchan 20.9 2.7E+02 0.0058 24.2 5.6 21 161-181 11-31 (100)
395 PF05064 Nsp1_C: Nsp1-like C-t 20.8 68 0.0015 28.6 2.0 22 56-77 15-36 (116)
396 PF15234 LAT: Linker for activ 20.5 78 0.0017 30.2 2.4 17 16-32 76-92 (230)
397 PRK09343 prefoldin subunit bet 20.5 6.2E+02 0.014 22.6 13.6 23 229-251 85-107 (121)
398 PF09006 Surfac_D-trimer: Lung 20.5 3.4E+02 0.0073 19.9 5.0 26 600-625 1-26 (46)
No 1
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=100.00 E-value=1.3e-71 Score=651.16 Aligned_cols=524 Identities=34% Similarity=0.494 Sum_probs=174.5
Q ss_pred hhHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH---
Q 004893 186 DSIEREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECL-------NQKSEV--- 255 (724)
Q Consensus 186 ~~~e~e~~~L~~~l~~L~~e~~~~~~~l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~-------~~~~~L--- 255 (724)
..++.....|+.++..+..+....+..+.+++..++..+..++..+..++.++..++..++.+. ..+..|
T Consensus 142 ~~le~~~~~L~~E~~~~~~e~~~~~~~l~~~~~~l~~~~~~~e~~~~~l~~e~~~l~~~le~~~~~~~e~e~~~~~L~~~ 221 (722)
T PF05557_consen 142 RKLEEEKRRLQREKEQLLEEAREEISSLKNELSELERQAENAESQIQSLESELEELKEQLEELQSELQEAEQQLQELQAS 221 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455566666666666666666666666666665555555555555555555555444443 344444
Q ss_pred -------HHHHhchhhhhhccccHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004893 256 -------EKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAE-------VREARKLKASYENTELLKEKLLEEKSRRERVE 321 (724)
Q Consensus 256 -------e~~~~~L~~e~~~~~e~~~~~k~L~~ql~~le~~-------~~El~~Lr~~~~~~ellkee~~~lq~kl~~~E 321 (724)
+..+..|+.++.....+..+.+.+.+++.++..+ ..|+++||+.+.++++|++++.+|+.++.+++
T Consensus 222 q~~~~e~e~~i~~Le~el~~~~~~~~i~k~l~~ql~~i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E 301 (722)
T PF05557_consen 222 QASLAEAEQKIKELEAELKDQESDAEINKELKEQLAHIRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLERLE 301 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555556666778887776655544 36788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC-CCCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhh
Q 004893 322 QELAKLREVQQSMDQLEDELSSWKFLIRDIP-GVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQ 400 (724)
Q Consensus 322 ~~~~~~~~le~~~~~Le~el~~w~~~~~~~~-~~~~~~~l~~~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~~~~e~ek~ 400 (724)
..+.++..+++++..|+.++.+|..++.+.+ ++.+|++|.++|..++.+...|++++|.+.+.+..++..+..++.++.
T Consensus 302 ~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~ 381 (722)
T PF05557_consen 302 ELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKE 381 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888764 678999999999999999999999999999999999999999998888
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchhchHhhHHHHHHHHHH-------H
Q 004893 401 SAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKK-------E 473 (724)
Q Consensus 401 ~le~e~~~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~~~~e~~~~~~~~~~~~~~~~~le~~l~~~-------~ 473 (724)
.+..++..+...+..++..+.||+++..++.+||+.||++|++|+.+.+....+. .....+..++..+..+ .
T Consensus 382 ~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ele 460 (722)
T PF05557_consen 382 QLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSE-QDTQRIKEIEDLEQLVDEYKAELE 460 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCch-hHHHHHhhHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999999999999999998765432221 1112222233333333 3
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C
Q 004893 474 EFIEELESNLHAQQEINSRQRDEIK--------------SLSEKLNNEERRIKSLERENDRLRSEISLLESKLGH----G 535 (724)
Q Consensus 474 ~~i~~Le~~l~~~~~~~~~l~~e~~--------------~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~~----~ 535 (724)
..+..++..+..++..+..+..++. .+.+.++.++.++..|+.++..+..++..|+.+|++ |
T Consensus 461 ~~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g 540 (722)
T PF05557_consen 461 AQLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEKLTLQG 540 (722)
T ss_dssp ---------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT
T ss_pred HHHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3555566665555443333332222 234567789999999999999999999999999987 9
Q ss_pred CCCcccchhhhccccccchHH--HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccccc---hhhHHHHHHHHHHHH
Q 004893 536 DFSSENTKVLRMVNTLAVDNE--AKQTIEALQTELQKTKEKLQAVEELKSQSGDTGKLVDSY---ISGKITQLKEQIATL 610 (724)
Q Consensus 536 ~~~~~~~ril~l~~n~~~~~~--~~~~l~~l~~E~~~L~~~l~~l~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 610 (724)
.|+++++|||||++||++.+. .+.+|+.|++||++|+.++..++.+++. +.+.+|.+. ...++.+|+.+|+++
T Consensus 541 ~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le~~~~~--~~~~~p~~~~~~~~~e~~~l~~~~~~~ 618 (722)
T PF05557_consen 541 EFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRSLEEGNSQ--PVDAVPTSSLESQEKEIAELKAELASA 618 (722)
T ss_dssp --BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT------------------HHHHHHHHHHHHH
T ss_pred ccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC--CcccccchhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999874 4789999999999999999999876654 355566654 356899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcceEEeccccccCCccceeEEEeecccCCCCCeeEEeecCCc--eeeccCCCCC
Q 004893 611 EKREERYKTVFADRISVFRRACCELFGYKIVMDEHQRANGIPVTHFTLQSIYAQGDDEKLEFEYESSN--TNIMVNDYTS 688 (724)
Q Consensus 611 ~k~~~rlke~f~~k~~efr~a~~~l~Gy~i~~~~~~~~~g~~~~~~~l~s~y~~~~~~~l~f~~~~~~--~~~~~~~~~~ 688 (724)
+|+++|||+||++||.+||+|||+||||+|+| .||| +|||+||||++|+|||+|++++|+ |++++++|.
T Consensus 619 ekr~~RLkevf~~ks~eFr~av~~llGyki~~----~~~~----~~rl~S~ya~~~~~~l~f~~~~~~~~~~~~~~~~~- 689 (722)
T PF05557_consen 619 EKRNQRLKEVFKAKSQEFREAVYSLLGYKIDF----MPNG----RVRLTSMYAESPDDYLIFDLESGTGSMKLLESEFS- 689 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEE----ETTT----EEEEEETT-SSTT--EEEEEE-----EEEE--CCH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcceeee----cCCC----eEEEEecccCCCCCeEEEeecCCCccceeCCCchH-
Confidence 99999999999999999999999999999999 7888 999999999999999999998776 999988875
Q ss_pred hhhhHHHHHHHhhhcCCcchhhhhhhhhhhhccC
Q 004893 689 QPEISRQVDIFVRKMNSIPAFTANLTVESFNRRT 722 (724)
Q Consensus 689 ~~~~~~~~~~~~~~~~~ip~fla~ltl~l~~~~t 722 (724)
+.|.++|.+||.+++|||||||||||+||+++|
T Consensus 690 -~~~~~~i~~~v~~~~siP~FLaalTlel~~~~t 722 (722)
T PF05557_consen 690 -PELEDLIEFWVEERNSIPAFLAALTLELFEKQT 722 (722)
T ss_dssp -HCTHHHHHHHTTTS--HHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCC
Confidence 789999999999999999999999999999998
No 2
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2e-61 Score=519.50 Aligned_cols=673 Identities=26% Similarity=0.307 Sum_probs=491.8
Q ss_pred CccCCCCCCCCCCcC-CCCcccCCCCCCCCCcceeeccCCC---CC-CCCCCCCCCCcccchHHhhHhhHhHHHHHHHHH
Q 004893 1 MILRTPPPKRPRDAA-GEPIIECPPTAGGSDRRLVIYEDPS---PA-GRESSHQPSDHLLCTYQCRQMVKSDFLDALTNV 75 (724)
Q Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 75 (724)
|++|+|.+.+-+++. .||.|.- +.||+..+.||.+.+ |. -.+++.+|-++..|||.|+.|++.+-...+...
T Consensus 1 Md~~~s~~~~~~a~~~~s~~~s~---~~~~~s~l~~~s~s~g~sP~~~q~s~~~~~~s~n~~~~s~~~~~~~~l~~Lqns 77 (716)
T KOG4593|consen 1 MDDRGSNTMVLSALRSLSNFPSQ---PVESGSQLDISSSSPGSSPNLYQPSMQSEERSENITSKSLLMQLEDELMQLQNS 77 (716)
T ss_pred CccccchhHHHHHhhccCCCCCc---ccccccccchhccCCCCCccccCcCCCchhhhccchhHHHHHHHHHHHHHHhhH
Confidence 999999999988877 6665333 446667788887755 21 234566677889999999999999976666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 76 EKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLLKEVDDSRERLKKQIQLCSELEAKHRN 155 (724)
Q Consensus 76 e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~~~~~~~~~e~lk~~l~~~~~l~~~L~~ 155 (724)
.+...--..+...+... ..+.+++..+.....+....+++.+....+++++....+..++.++..+..+.+++..+..
T Consensus 78 ~kr~el~~~k~~~i~~r--~~~~~~dr~~~~~~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae 155 (716)
T KOG4593|consen 78 HKRAELELTKAQSILAR--NYEAEVDRKHKLLTRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAE 155 (716)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333333333332 3455555556666666666677777777777776555555555555555554444444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 156 ELNLRRKAESAAASAEEKASLLEGKLTHLSDSIEREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLK 235 (724)
Q Consensus 156 e~~~~~~~e~~~~~l~~~l~~l~~el~e~~~~~e~e~~~L~~~l~~L~~e~~~~~~~l~~ele~~~~~~~~~E~e~~~L~ 235 (724)
....+.++++... +++.++.-.+.+.+.+...+.+....+.++...+..++....
T Consensus 156 ~~~lr~k~dss~s-------------------------~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~ 210 (716)
T KOG4593|consen 156 LGTLRNKLDSSLS-------------------------ELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQ 210 (716)
T ss_pred HHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333332 333333334444444444555555555555545555444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhhHHHHHH
Q 004893 236 NQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAE-------VREARKLKASYENTELLKE 308 (724)
Q Consensus 236 ~el~el~~~l~e~~~~~~~Le~~~~~L~~e~~~~~e~~~~~k~L~~ql~~le~~-------~~El~~Lr~~~~~~ellke 308 (724)
.....+....+. .. +.....+++....+.+.+++...+++..++.+ ..++.++|+...++.+|++
T Consensus 211 ~~~~~l~e~~~~-~q-------q~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~Lqe 282 (716)
T KOG4593|consen 211 ELQASLEERADH-EQ-------QNAELEQQLSLSEELEAINKNMKDQLQELEELERALSQLREELATLRENRETVGLLQE 282 (716)
T ss_pred HHHHHHHHHHHH-HH-------HHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 444443332222 22 22333333333335566666666666655554 5778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC---------------------------CCCCCCchH
Q 004893 309 KLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIP---------------------------GVSCSEDIP 361 (724)
Q Consensus 309 e~~~lq~kl~~~E~~~~~~~~le~~~~~Le~el~~w~~~~~~~~---------------------------~~~~~~~l~ 361 (724)
++..|++++.+++.....+..++.++..+..++..|+.+..... ++.+|.+++
T Consensus 283 E~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE~~~~~~~~~~~~~~~~~~~~~e~s~~~~l~~~~~t~~s~~~~~ 362 (716)
T KOG4593|consen 283 ELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRWERADQEMGSLRTPEDLMEKLVNEQSRNANLKNKNSTVTSPARGL 362 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhhhccccccccCcccch
Confidence 99999999999999999999999999999999999998765521 234677777
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004893 362 VKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVV 441 (724)
Q Consensus 362 ~~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~~~~e~ek~~le~e~~~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l 441 (724)
..+..+.++...-+..++....+++.+..++..+......+-.++.++............++...+..++++++.++..+
T Consensus 363 ~r~~q~lke~~k~~~~ite~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~reqlk~lV 442 (716)
T KOG4593|consen 363 ERARQLLKEELKQVAGITEEETKLKELHETLARRLQKRALLLTQERDLNRAILGSKDDEKRLAEELPQVTKEREQLKGLV 442 (716)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhHHHHHHHHHHHHHH
Confidence 77777777777778889999999999999988777777777777888888888888899999999999999999999888
Q ss_pred HhccCCCCCCCCcchhchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 442 NEFKKPKNDGGGDERANLTLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRL 521 (724)
Q Consensus 442 ~~~~~e~~~~~~~~~~~~~~~~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l 521 (724)
..++................+........+..+.+.+|..+|..........+.+..-+...+....+++..|+.+...+
T Consensus 443 ~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rL 522 (716)
T KOG4593|consen 443 QKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEENDRL 522 (716)
T ss_pred HHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 87754332110000001134445555666667777777777776665555555555556666777788888888888888
Q ss_pred HHHHHHHHHHhcCCCCCcccchhhhccccccchH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccccch--h
Q 004893 522 RSEISLLESKLGHGDFSSENTKVLRMVNTLAVDN--EAKQTIEALQTELQKTKEKLQAVEELKSQSGDTGKLVDSYI--S 597 (724)
Q Consensus 522 ~~e~~~Le~~l~~~~~~~~~~ril~l~~n~~~~~--~~~~~l~~l~~E~~~L~~~l~~l~~~~~~~~~~~~~~~~~~--~ 597 (724)
+ ..++.+..+|+|....+||||+++||+++. ..+..++.|++||++|+..+..++.++.+..+.+....|.+ .
T Consensus 523 r---~~~e~~~l~gd~~~~~~rVl~~~~npt~~~~~~~k~~~e~LqaE~~~lk~~l~~le~~~~~~~d~~i~~~s~~~~~ 599 (716)
T KOG4593|consen 523 R---AQLERRLLQGDYEENITRVLHMSTNPTSKARQIKKNRLEELQAELERLKERLTALEGDKMQFRDGEIAVHSLLAFS 599 (716)
T ss_pred H---HHHHHHHHhhhhhhhccceeeecCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHhhhhcch
Confidence 8 677888888999999999999999999554 45789999999999999999999987765444444444544 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceEEeccccccCCccceeEEEeecccCCCCCeeEEeecCC
Q 004893 598 GKITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEHQRANGIPVTHFTLQSIYAQGDDEKLEFEYESS 677 (724)
Q Consensus 598 ~~~~~l~~~~~~~~k~~~rlke~f~~k~~efr~a~~~l~Gy~i~~~~~~~~~g~~~~~~~l~s~y~~~~~~~l~f~~~~~ 677 (724)
.++++|+.++++++++++|||+||+.+|.+||+|||+||||+|+| .+++ +|||+|+||++|++|++|.+++|
T Consensus 600 ~ev~qlk~ev~s~ekr~~rlk~vF~~ki~eFr~ac~sL~Gykid~----~~~s----~~ritS~ya~~~~~~~~~e~eS~ 671 (716)
T KOG4593|consen 600 KEVAQLKKEVESAEKRNQRLKEVFASKIQEFRDACYSLLGYKIDF----TLES----RYRLTSGYAEEPDDCDIFENESG 671 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc----cccc----ceeeeeeccCCCchhhhhcCccc
Confidence 699999999999999999999999999999999999999999999 4444 99999999999999999999999
Q ss_pred ceeeccCCCCChhhhHHHHHHHhhhcCCcchhhhhhhhhhhhccCCC
Q 004893 678 NTNIMVNDYTSQPEISRQVDIFVRKMNSIPAFTANLTVESFNRRTLS 724 (724)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~fla~ltl~l~~~~t~~ 724 (724)
+|.+|+++|+ +.|+++|++||..++|||||||||||+||++.|++
T Consensus 672 s~~ll~n~~~--~~~d~li~~~~~~~~siPaFlaaLTLELf~k~tv~ 716 (716)
T KOG4593|consen 672 SLQLLENPYS--HTFDPLIQVWCFARSSIPAFLAALTLELFQKRTVT 716 (716)
T ss_pred hhHhhcCCcc--cccchHhhhhhhcccCchHHHHHHHHHHHhhccCC
Confidence 9999999998 77999999999999999999999999999999986
No 3
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=3.5e-15 Score=162.86 Aligned_cols=470 Identities=18% Similarity=0.196 Sum_probs=226.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccHH---HHHHHH
Q 004893 203 KRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSN---ILVKHL 279 (724)
Q Consensus 203 ~~e~~~~~~~l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~~~~~e~~---~~~k~L 279 (724)
...+...+++++.+.--....+..+...+..++.++.....++....+.+.+....+..+....+-..+.. .....+
T Consensus 160 r~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~el 239 (716)
T KOG4593|consen 160 RNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSLSEEL 239 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHH
Confidence 33344444555555544455555555666666666666666666655555555555544432222111100 011122
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 004893 280 QEEIRNYEAEVREARKLKASYENTELLKEKLL----------EEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIR 349 (724)
Q Consensus 280 ~~ql~~le~~~~El~~Lr~~~~~~ellkee~~----------~lq~kl~~~E~~~~~~~~le~~~~~Le~el~~w~~~~~ 349 (724)
............++..|. ....-+.+++. -|+..++.++.....+..++..+.-|+-+--.+...+.
T Consensus 240 e~i~~~~~dqlqel~~l~---~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~ 316 (716)
T KOG4593|consen 240 EAINKNMKDQLQELEELE---RALSQLREELATLRENRETVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQ 316 (716)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 222222222222222222 22222333322 23333334444444444444444444444444444433
Q ss_pred cCC----CCC---CCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhHHH-HH
Q 004893 350 DIP----GVS---CSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEVSKSE-VK 421 (724)
Q Consensus 350 ~~~----~~~---~~~~l~~~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~~~~e~ek~~le~e~~~l~~~~~~~~~~-~~ 421 (724)
.-. ..+ +|.++...+..++.....+...+..+.+-....+.....+....+. -..+..+..++..+... ..
T Consensus 317 rwE~~~~~~~~~~~~~~~~~~~~~e~s~~~~l~~~~~t~~s~~~~~~r~~q~lke~~k~-~~~ite~~tklk~l~etl~~ 395 (716)
T KOG4593|consen 317 RWERADQEMGSLRTPEDLMEKLVNEQSRNANLKNKNSTVTSPARGLERARQLLKEELKQ-VAGITEEETKLKELHETLAR 395 (716)
T ss_pred HHHHHhhhhhccCCHHHHHHHHHHHHHHHhhhccccccccCcccchHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHH
Confidence 211 111 1444555666677777777777777776655444443322222211 11233333344444444 44
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchhchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 004893 422 RIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLS 501 (724)
Q Consensus 422 rLek~~~~~~~er~~lr~~l~~~~~e~~~~~~~~~~~~~~~~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~ 501 (724)
++.++...++.++|..+..+.+++... ++...-..+.+.+.+++.|=..++...-. .......+.
T Consensus 396 ~~~~~~~~~tq~~Dl~~~~~~~~~~~k------------rl~~~l~~~tk~reqlk~lV~~~~k~~~e---~e~s~~~~~ 460 (716)
T KOG4593|consen 396 RLQKRALLLTQERDLNRAILGSKDDEK------------RLAEELPQVTKEREQLKGLVQKVDKHSLE---MEASMEELY 460 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchHH------------HHHHHhHHHHHHHHHHHHHHHHHHHhhHh---hhhhhHHHH
Confidence 556667788889999988888774322 12222222222233333333332221110 000111122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhccccccch-HHHHHHHHHHHHHHHHHHHHHHH--H
Q 004893 502 EKLNNEERRIKSLERENDRLRSEISLLESKLGHGDFSSENTKVLRMVNTLAVD-NEAKQTIEALQTELQKTKEKLQA--V 578 (724)
Q Consensus 502 ~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~~~~~~~~~~ril~l~~n~~~~-~~~~~~l~~l~~E~~~L~~~l~~--l 578 (724)
..+.........++.+...+..++...+..+.. +.. . ..+.... ....+.++.|+.||.+|+..+-. +
T Consensus 461 ~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~-----qr~-e---~~~~~e~i~~~~ke~~~Le~En~rLr~~~e~~~l 531 (716)
T KOG4593|consen 461 REITGQKKRLEKLEHELKDLQSQLSSREQSLLF-----QRE-E---SELLREKIEQYLKELELLEEENDRLRAQLERRLL 531 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH-H---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333333333344443443333333333321 000 0 1111110 12367889999999999844321 1
Q ss_pred HHhhcccCCCcccccc-chh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceEEeccccccCCccceeE
Q 004893 579 EELKSQSGDTGKLVDS-YIS-GKITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEHQRANGIPVTHF 656 (724)
Q Consensus 579 ~~~~~~~~~~~~~~~~-~~~-~~~~~l~~~~~~~~k~~~rlke~f~~k~~efr~a~~~l~Gy~i~~~~~~~~~g~~~~~~ 656 (724)
.+.... .....||-+ ... .-....+..+..+.+-+.|||+ -+..+-||+..|. || .+
T Consensus 532 ~gd~~~-~~~rVl~~~~npt~~~~~~~k~~~e~LqaE~~~lk~-----------~l~~le~~~~~~~-----d~----~i 590 (716)
T KOG4593|consen 532 QGDYEE-NITRVLHMSTNPTSKARQIKKNRLEELQAELERLKE-----------RLTALEGDKMQFR-----DG----EI 590 (716)
T ss_pred hhhhhh-hccceeeecCCchHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhccCCccc-----ch----hh
Confidence 111111 122223221 111 2234456666667777766665 4456788988872 44 45
Q ss_pred EEeecccCCCCCeeEEeecCCceeeccCCCCChhhhHHHHHHHhhhcCCcchhhhhhhhhhhhccCCC
Q 004893 657 TLQSIYAQGDDEKLEFEYESSNTNIMVNDYTSQPEISRQVDIFVRKMNSIPAFTANLTVESFNRRTLS 724 (724)
Q Consensus 657 ~l~s~y~~~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~fla~ltl~l~~~~t~~ 724 (724)
-+.|+|+.+ .+...|....++++....-|. .-|..-|..|...|.|||||...+|.+.|.+-|.|
T Consensus 591 ~~~s~~~~~-~ev~qlk~ev~s~ekr~~rlk--~vF~~ki~eFr~ac~sL~Gykid~~~~s~~ritS~ 655 (716)
T KOG4593|consen 591 AVHSLLAFS-KEVAQLKKEVESAEKRNQRLK--EVFASKIQEFRDACYSLLGYKIDFTLESRYRLTSG 655 (716)
T ss_pred HHhhhhcch-HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhhhhcccccceeeeee
Confidence 567888762 466777777777665444343 56888999999999999999999999988887654
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.83 E-value=2.5e-14 Score=175.36 Aligned_cols=472 Identities=21% Similarity=0.273 Sum_probs=317.2
Q ss_pred hHHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHH
Q 004893 57 TYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLLKEVDDSR 136 (724)
Q Consensus 57 ~~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~~~~~~~~~ 136 (724)
+-..++.-...-.....+.++....++.++..++..+..+...+..+...+...+.++..+..+..-...-+ ....
T Consensus 1021 ~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~----~~l~ 1096 (1930)
T KOG0161|consen 1021 QLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEV----AQLQ 1096 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH----HHHH
Confidence 344444444444555555566666777777777777777777777777777777777777666533322211 1112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHHHHH--hhh
Q 004893 137 ERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLS----------DSIEREKKRLNNEVTQ--LKR 204 (724)
Q Consensus 137 e~lk~~l~~~~~l~~~L~~e~~~~~~~e~~~~~l~~~l~~l~~el~e~~----------~~~e~e~~~L~~~l~~--L~~ 204 (724)
..++.....+.++.+.++.+...+..++....++...++.+..++++.. ...+.++..|++.++. +.+
T Consensus 1097 k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~ 1176 (1930)
T KOG0161|consen 1097 KQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDH 1176 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 2222333446667777778888888888888888888877777776651 3445666677766665 222
Q ss_pred HhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccc----c
Q 004893 205 ESKS---------SISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTT----D 271 (724)
Q Consensus 205 e~~~---------~~~~l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~~~~~----e 271 (724)
+... .+.++...+++.+....+++.+.+.++.++.++...++.....+.+++.....++.++.++. +
T Consensus 1177 e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~ 1256 (1930)
T KOG0161|consen 1177 EAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDE 1256 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 24556677777777777888888888888888888887766666666666655554443332 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhh-hhHHHHHHH--------------HHHHH----HHHH
Q 004893 272 SNILVKHLQEEIRNYEAEVRE--------------ARKLKASY-ENTELLKEK--------------LLEEK----SRRE 318 (724)
Q Consensus 272 ~~~~~k~L~~ql~~le~~~~E--------------l~~Lr~~~-~~~ellkee--------------~~~lq----~kl~ 318 (724)
.+.....+..+...+.....+ +.+.+... ..++.++.+ +..++ .-.+
T Consensus 1257 ~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e 1336 (1930)
T KOG0161|consen 1257 QERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLRE 1336 (1930)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222222211111 11111000 111111111 11111 1234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 004893 319 RVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLG 398 (724)
Q Consensus 319 ~~E~~~~~~~~le~~~~~Le~el~~w~~~~~~~~~~~~~~~l~~~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~~~~e~e 398 (724)
.++...+.+..+..++.++..+..+|+..++.. ...+.+++......+...+..+.+.++.+.+.+..++++
T Consensus 1337 ~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~-~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~------- 1408 (1930)
T KOG0161|consen 1337 QLEEEQEAKNELERKLSKANAELAQWKKKFEEE-VLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKA------- 1408 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------
Confidence 567777778999999999999999999998764 223355666677778888888888888888888887776
Q ss_pred hhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchhchHhhHHHHHHHHHHHHHHHH
Q 004893 399 KQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFIEE 478 (724)
Q Consensus 399 k~~le~e~~~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~~~~e~~~~~~~~~~~~~~~~~le~~l~~~~~~i~~ 478 (724)
+..+..++.++..+++.....+..|+++++.+++.++.|+...+.+..+++ ........+++.+..+.+.+++
T Consensus 1409 k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld-------~aq~e~r~~~tel~kl~~~lee 1481 (1930)
T KOG0161|consen 1409 KNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELD-------AAQRELRQLSTELQKLKNALEE 1481 (1930)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHH
Confidence 467778888999999999999999999999999999999999999877665 2346678889999999999999
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCcccchhhhc
Q 004893 479 LESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLGH--GDFSSENTKVLRM 547 (724)
Q Consensus 479 Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~~--~~~~~~~~ril~l 547 (724)
+..++..+.+.++.++.++..+...+.++++.+.+|+..+..+..++..|...+.. +.+.....+++++
T Consensus 1482 ~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~ 1552 (1930)
T KOG0161|consen 1482 LLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRL 1552 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 99999999999999999999999999999999988888888888887777777764 3333455566654
No 5
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.63 E-value=3.7e-17 Score=193.65 Aligned_cols=545 Identities=19% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHH
Q 004893 58 YQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLLKEVDDSRE 137 (724)
Q Consensus 58 ~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~~~~~~~~~e 137 (724)
|..-+..+..+...+..++.+|.+++..++.=+....+.+..+..+...+..+...+....+...+..+-. .....
T Consensus 27 ~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~-kkrE~--- 102 (859)
T PF01576_consen 27 LEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQIELN-KKREA--- 102 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHHH-HHHHH---
Confidence 33334444445555555555555555555555555555555555666555555555555544432222211 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH
Q 004893 138 RLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLSDSIEREKKRLNNEVTQLKRESKSSISRIGADL 217 (724)
Q Consensus 138 ~lk~~l~~~~~l~~~L~~e~~~~~~~e~~~~~l~~~l~~l~~el~e~~~~~e~e~~~L~~~l~~L~~e~~~~~~~l~~el 217 (724)
.+..+...|... ....+..+..+..++.....++......+...+..|++....+..+..++ .+++
T Consensus 103 -------El~~Lrr~LEe~---~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL----~~~l 168 (859)
T PF01576_consen 103 -------ELAKLRRDLEEA---NLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDL----QAQL 168 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------HHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHH
Confidence 111111112110 12233344444444444444444333444445556666666666555544 3446
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccc----cHHHHHHHHHHHHHHHHHHHHHH
Q 004893 218 EKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTT----DSNILVKHLQEEIRNYEAEVREA 293 (724)
Q Consensus 218 e~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~~~~~----e~~~~~k~L~~ql~~le~~~~El 293 (724)
+........+++.+..++.++.+++..+++....+.++......|..++.++. +.+.....++.....+.....++
T Consensus 169 ~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeel 248 (859)
T PF01576_consen 169 DSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEEL 248 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66666777778888888899999999998888888888888888877776543 33333444444343444333333
Q ss_pred HH-------HHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCCCCCchHHHHH
Q 004893 294 RK-------LKASY-ENTELLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFA 365 (724)
Q Consensus 294 ~~-------Lr~~~-~~~ellkee~~~lq~kl~~~E~~~~~~~~le~~~~~Le~el~~w~~~~~~~~~~~~~~~l~~~~~ 365 (724)
.. .+... ..+.-+..++..+.. .++........++.++..+..++..|+..++.. +....+.+....+
T Consensus 249 k~~leeEtr~k~~L~~~l~~le~e~~~L~e---qleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e-~~~~~EelEeaKK 324 (859)
T PF01576_consen 249 KRQLEEETRAKQALEKQLRQLEHELEQLRE---QLEEEEEAKSELERQLSKLNAELEQWKKKYEEE-AEQRTEELEEAKK 324 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhHhhhhhhhHHHHHHHHHHHHHHHH---HHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 21 11111 111112222333332 234455566889999999999999999998865 2222456666777
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Q 004893 366 ALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFK 445 (724)
Q Consensus 366 ~Lq~e~~~l~~~~~~~~~~~~~le~~~~~~e~ek~~le~e~~~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~~~ 445 (724)
.|...+..+...+..+...+..+++. +..+..++.++...++.....++.|+++...|+..+..|+..++...
T Consensus 325 kL~~~L~el~e~le~~~~~~~~LeK~-------k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~ 397 (859)
T PF01576_consen 325 KLERKLQELQEQLEEANAKVSSLEKT-------KKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQ 397 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 88888889999999998888888776 46788899999999999999999999999999999999999998877
Q ss_pred CCCCCCCCcchhchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 446 KPKNDGGGDERANLTLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEI 525 (724)
Q Consensus 446 ~e~~~~~~~~~~~~~~~~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~ 525 (724)
.+.+. .......+.+.+..++..++++...+..+...+..++.++..+...+++.+..+..|++.+..|..++
T Consensus 398 ~e~d~-------~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~ 470 (859)
T PF01576_consen 398 AERDA-------AQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEK 470 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHH-------HHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHH
Confidence 66652 33556788999999999999999999999999999999999999888888888888888888888888
Q ss_pred HHHHHHhcC--CCCCcccchhhhccccccc-hHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcc-----cCCCcccc-ccc
Q 004893 526 SLLESKLGH--GDFSSENTKVLRMVNTLAV-DNEAKQTIEALQTELQKTKEKLQ-AVEELKSQ-----SGDTGKLV-DSY 595 (724)
Q Consensus 526 ~~Le~~l~~--~~~~~~~~ril~l~~n~~~-~~~~~~~l~~l~~E~~~L~~~l~-~l~~~~~~-----~~~~~~~~-~~~ 595 (724)
..+...+.. |.+.....+++++..++.. +..+...|..-..|.+.++..+. .+..+... .+...++. +..
T Consensus 471 ~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkK 550 (859)
T PF01576_consen 471 EELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKK 550 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 888777765 5666788889999777653 33334445544455555542222 22211111 01111111 334
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceEEeccc
Q 004893 596 ISGKITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEH 645 (724)
Q Consensus 596 ~~~~~~~l~~~~~~~~k~~~rlke~f~~k~~efr~a~~~l~Gy~i~~~~~ 645 (724)
+..++++|..++...++-. ...+..++..-..+-.+.+.+.+.
T Consensus 551 LE~~l~eLe~~ld~~n~~~-------~e~~k~~kk~q~qlkdlq~~lee~ 593 (859)
T PF01576_consen 551 LESDLNELEIQLDHANRAN-------EEAQKQLKKLQAQLKDLQRELEEA 593 (859)
T ss_dssp --------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhHhH-------HHHHHHHHHHHHHHHHHhhhhHHH
Confidence 7778888888888877655 233444455555555566666443
No 6
>PRK02224 chromosome segregation protein; Provisional
Probab=99.54 E-value=1.8e-07 Score=114.04 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=7.3
Q ss_pred HHhHHHHHHHHHHHHHh
Q 004893 427 LSVVTEERDKLRNVVNE 443 (724)
Q Consensus 427 ~~~~~~er~~lr~~l~~ 443 (724)
...+..+...++..+..
T Consensus 539 ~~~l~~e~~~l~~~~~~ 555 (880)
T PRK02224 539 AEELRERAAELEAEAEE 555 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 7
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.54 E-value=1.5e-07 Score=116.84 Aligned_cols=208 Identities=20% Similarity=0.266 Sum_probs=117.1
Q ss_pred HHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHH
Q 004893 58 YQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLLKEVDDSRE 137 (724)
Q Consensus 58 ~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~~~~~~~~~e 137 (724)
+.++...+.++...+.....++...+.+...+..+..+.+.....+...+..++..+..+..+......++ ..+.....
T Consensus 896 ~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~-~~l~~e~~ 974 (1930)
T KOG0161|consen 896 LERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKL-KNLEEEIN 974 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 44555566666666666666666666655555555555555555555555555555555554433333333 33333222
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---HHHHHHHHHHHhhhHhHHH-
Q 004893 138 RLKKQIQLCSE----LEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLSDSIER---EKKRLNNEVTQLKRESKSS- 209 (724)
Q Consensus 138 ~lk~~l~~~~~----l~~~L~~e~~~~~~~e~~~~~l~~~l~~l~~el~e~~~~~e~---e~~~L~~~l~~L~~e~~~~- 209 (724)
.+...+.++.. ++..+..........+.+...+.+....++..++++...++. ....+++..+.+.++.+..
T Consensus 975 ~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~ 1054 (1930)
T KOG0161|consen 975 SLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQ 1054 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22222222222 222222222222344555555666666666666665543332 2346666666677766554
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Q 004893 210 --ISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQE 266 (724)
Q Consensus 210 --~~~l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~ 266 (724)
+..+......+...+.+.+.++..++.++++....+..+.+.+.+|.+++..|..++
T Consensus 1055 e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~l 1113 (1930)
T KOG0161|consen 1055 ESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEEL 1113 (1930)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455666677777777888888888888888888888888888888777776554
No 8
>PRK02224 chromosome segregation protein; Provisional
Probab=99.44 E-value=1.8e-06 Score=105.30 Aligned_cols=8 Identities=0% Similarity=0.060 Sum_probs=3.5
Q ss_pred HHHHHHHh
Q 004893 629 RRACCELF 636 (724)
Q Consensus 629 r~a~~~l~ 636 (724)
-+++..+|
T Consensus 744 ~~~~~~~~ 751 (880)
T PRK02224 744 NETFDLVY 751 (880)
T ss_pred HHHHHHHc
Confidence 33444444
No 9
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.44 E-value=1.1e-06 Score=110.82 Aligned_cols=212 Identities=14% Similarity=0.140 Sum_probs=121.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcch----hc--hHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHh
Q 004893 419 EVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDER----AN--LTLTKELESSLAKKEEFIEELESNLHAQQ--EIN 490 (724)
Q Consensus 419 ~~~rLek~~~~~~~er~~lr~~l~~~~~e~~~~~~~~~----~~--~~~~~~le~~l~~~~~~i~~Le~~l~~~~--~~~ 490 (724)
.++.++..+..+..++..++..++.+...+.....+.. +. ...+..+..++..++.+|+.|+..+.... ...
T Consensus 745 eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~ 824 (1311)
T TIGR00606 745 EIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTV 824 (1311)
T ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCH
Confidence 34445555555555555555555555443321111100 00 02233444555555555555555554321 234
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhccccccchHHHHHHHHHHHHHHHH
Q 004893 491 SRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLGHGDFSSENTKVLRMVNTLAVDNEAKQTIEALQTELQK 570 (724)
Q Consensus 491 ~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~~~~~~~~~~ril~l~~n~~~~~~~~~~l~~l~~E~~~ 570 (724)
..++.++..++..+..+...+..+..+...+..++..|+.++.. .....+.+.+...-+......|+.|..+++.
T Consensus 825 ~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~e-----l~~~klkl~~~l~~r~~le~~L~el~~el~~ 899 (1311)
T TIGR00606 825 QQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNE-----LKSEKLQIGTNLQRRQQFEEQLVELSTEVQS 899 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888888888888888888888888666542 2233334433222222335678888888888
Q ss_pred HHHHHHHHHHhhcccCCCcccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceE
Q 004893 571 TKEKLQAVEELKSQSGDTGKLV-DSYISGKITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKI 640 (724)
Q Consensus 571 L~~~l~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~k~~~rlke~f~~k~~efr~a~~~l~Gy~i 640 (724)
+...+..+..... +.-| ......++.+++..........+.-...|......|..++..+.+|--
T Consensus 900 l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~ 965 (1311)
T TIGR00606 900 LIREIKDAKEQDS-----PLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQ 965 (1311)
T ss_pred HHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877776552111 1111 112344566666666666666666667777777888888888877743
No 10
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.38 E-value=6.8e-06 Score=103.68 Aligned_cols=29 Identities=21% Similarity=0.182 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcceEEe
Q 004893 614 EERYKTVFADRISVFRRACCELFGYKIVM 642 (724)
Q Consensus 614 ~~rlke~f~~k~~efr~a~~~l~Gy~i~~ 642 (724)
...+...|..-...|...+..|||+.-.+
T Consensus 1017 ~~~f~~~f~~~~~~f~~~~~~l~~~~~~l 1045 (1164)
T TIGR02169 1017 REVFMEAFEAINENFNEIFAELSGGTGEL 1045 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 34455566666999999999999988655
No 11
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.37 E-value=4.2e-06 Score=105.67 Aligned_cols=66 Identities=17% Similarity=0.261 Sum_probs=39.0
Q ss_pred HHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHH
Q 004893 58 YQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGV 123 (724)
Q Consensus 58 ~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~ 123 (724)
+..+...+..+...+.....++..++..+..+...+..+...+..+...+..+...+.....++..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~~ 306 (1179)
T TIGR02168 241 LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQI 306 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 666666666666666666666666666666666555555555555555555555555444444333
No 12
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.36 E-value=2.9e-06 Score=107.10 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004893 599 KITQLKEQIATLEKREERYKT 619 (724)
Q Consensus 599 ~~~~l~~~~~~~~k~~~rlke 619 (724)
++..++.++..+..+...+.+
T Consensus 916 ~l~~l~~~~~~~~~~~~~l~~ 936 (1179)
T TIGR02168 916 ELEELREKLAQLELRLEGLEV 936 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555554444444443
No 13
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.34 E-value=3.1e-06 Score=103.69 Aligned_cols=31 Identities=13% Similarity=0.311 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 597 SGKITQLKEQIATLEKREERYKTVFADRISV 627 (724)
Q Consensus 597 ~~~~~~l~~~~~~~~k~~~rlke~f~~k~~e 627 (724)
..++..+..++..++....||...|..+-..
T Consensus 1352 ~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1352 NNEKANLTKELEQLEDLKTRLAAALSEKNAQ 1382 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888888888877665444
No 14
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.34 E-value=1.1e-05 Score=100.61 Aligned_cols=44 Identities=30% Similarity=0.466 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhc---ceEEec
Q 004893 600 ITQLKEQIATLE-KREERYKTVFADRISVFRRACCELFG---YKIVMD 643 (724)
Q Consensus 600 ~~~l~~~~~~~~-k~~~rlke~f~~k~~efr~a~~~l~G---y~i~~~ 643 (724)
+..|...|.... ++..++++.|..-...|...+..||| -.+.+.
T Consensus 993 ~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~if~~L~~GG~a~L~l~ 1040 (1163)
T COG1196 993 KEKLLEVIEELDKEKRERFKETFDKINENFSEIFKELFGGGTAELELT 1040 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEEeC
Confidence 334444444444 66778999999999999999999998 555553
No 15
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.31 E-value=1.2e-05 Score=101.66 Aligned_cols=73 Identities=18% Similarity=0.156 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhc
Q 004893 461 LTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSL--ERENDRLRSEISLLESKLG 533 (724)
Q Consensus 461 ~~~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~L--e~e~~~l~~e~~~Le~~l~ 533 (724)
.+..++..+..+...++.++..+.........+..++..+......+...+..+ ..++..+..++..|+..+.
T Consensus 971 qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~ 1045 (1311)
T TIGR00606 971 YLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMG 1045 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355566666666666666666666666555556666655555555555555555 6666667777777776665
No 16
>PRK03918 chromosome segregation protein; Provisional
Probab=99.29 E-value=2.1e-05 Score=96.25 Aligned_cols=9 Identities=11% Similarity=-0.127 Sum_probs=5.1
Q ss_pred eeccCCCCC
Q 004893 680 NIMVNDYTS 688 (724)
Q Consensus 680 ~~~~~~~~~ 688 (724)
-+++.||++
T Consensus 816 lilDEp~~~ 824 (880)
T PRK03918 816 LILDEPTPF 824 (880)
T ss_pred EEEeCCCcc
Confidence 356666655
No 17
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.29 E-value=2.2e-05 Score=96.51 Aligned_cols=84 Identities=23% Similarity=0.297 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHHHHHhhhHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 186 DSIEREKKRLNNEVTQLKRESKSS-------ISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKK 258 (724)
Q Consensus 186 ~~~e~e~~~L~~~l~~L~~e~~~~-------~~~l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~ 258 (724)
..++..+..|...+..++.+.... ...+..++..++..+..+......+...+..++..++.+...+.+|+..
T Consensus 801 ~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~ 880 (1822)
T KOG4674|consen 801 DKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKR 880 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544433 4455677788888888888888888888888888888888888888888
Q ss_pred Hhchhhhhhcc
Q 004893 259 LSSSTFQEFST 269 (724)
Q Consensus 259 ~~~L~~e~~~~ 269 (724)
+.........+
T Consensus 881 l~~~~~~~~~l 891 (1822)
T KOG4674|consen 881 LKSAKTQLLNL 891 (1822)
T ss_pred HHHhHHHHhhc
Confidence 88776665433
No 18
>PRK03918 chromosome segregation protein; Provisional
Probab=99.21 E-value=4.9e-05 Score=92.95 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 004893 365 AALQKEVIDSMMKLGEANAQLKQMEVAL 392 (724)
Q Consensus 365 ~~Lq~e~~~l~~~~~~~~~~~~~le~~~ 392 (724)
.....++..+..++..+..++..++..+
T Consensus 455 ~~~~~ei~~l~~~~~~l~~~~~~l~~~~ 482 (880)
T PRK03918 455 EEYTAELKRIEKELKEIEEKERKLRKEL 482 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555544443
No 19
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.11 E-value=0.00016 Score=90.48 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004893 600 ITQLKEQIATLEKREERYKT 619 (724)
Q Consensus 600 ~~~l~~~~~~~~k~~~rlke 619 (724)
..++..++..++.....+++
T Consensus 886 ~~~l~~~l~~~~~~~~~~~~ 905 (1163)
T COG1196 886 KEELEEELRELESELAELKE 905 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 20
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.08 E-value=0.0001 Score=85.92 Aligned_cols=112 Identities=17% Similarity=0.251 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-cccch
Q 004893 465 LESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLGHGDFS-SENTK 543 (724)
Q Consensus 465 le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~~~~~~-~~~~r 543 (724)
+...+..++..+..|+..++...-....++.+...+......-...+..|.-.++.....+..|+..+....-+ ....+
T Consensus 470 ~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r 549 (775)
T PF10174_consen 470 YQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDR 549 (775)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcch
Confidence 33444444444444444444333233333333333333333334556666666666666666666666420000 01112
Q ss_pred hhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 544 VLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQAVE 579 (724)
Q Consensus 544 il~l~~n~~~~~~~~~~l~~l~~E~~~L~~~l~~l~ 579 (724)
|-.|-.- . ...+......+.|+++|+..+..++
T Consensus 550 ~~~Le~e-v--~~~~ee~~kaq~EVERLl~~L~~~E 582 (775)
T PF10174_consen 550 IQQLEQE-V--TRYREESEKAQAEVERLLDILREAE 582 (775)
T ss_pred HHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111100 0 0124456677888888887777655
No 21
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.07 E-value=0.00011 Score=85.49 Aligned_cols=48 Identities=21% Similarity=0.358 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 004893 217 LEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTF 264 (724)
Q Consensus 217 le~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~ 264 (724)
++.....+..+..+.+.+..++.++...++-.+..+..|..++..|..
T Consensus 359 l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee 406 (775)
T PF10174_consen 359 LEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEE 406 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555555555555555555555555555555444443
No 22
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.02 E-value=0.00035 Score=87.50 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 004893 366 ALQKEVIDSMMKLGEANAQLKQMEVAL 392 (724)
Q Consensus 366 ~Lq~e~~~l~~~~~~~~~~~~~le~~~ 392 (724)
.|+.++..+...+..+......++..+
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l 630 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEKQL 630 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555554443
No 23
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.96 E-value=0.00061 Score=86.09 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 004893 363 KFAALQKEVIDSMMKLGEANAQLKQMEVALDA 394 (724)
Q Consensus 363 ~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~~~ 394 (724)
.+..+..++..+..++..+...+..++..+..
T Consensus 675 ~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~ 706 (1164)
T TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDE 706 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555565555555555544444433
No 24
>PRK01156 chromosome segregation protein; Provisional
Probab=98.92 E-value=0.00064 Score=83.28 Aligned_cols=36 Identities=14% Similarity=0.374 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 004893 312 EEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFL 347 (724)
Q Consensus 312 ~lq~kl~~~E~~~~~~~~le~~~~~Le~el~~w~~~ 347 (724)
.+......++.....+..+...+..++.....|...
T Consensus 516 ~l~~~~~~~~~l~~~l~~~~~~l~~le~~~~~~~~l 551 (895)
T PRK01156 516 KSINEYNKIESARADLEDIKIKINELKDKHDKYEEI 551 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555655566666666666544
No 25
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.85 E-value=4.4e-10 Score=133.84 Aligned_cols=58 Identities=22% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhcc
Q 004893 212 RIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFST 269 (724)
Q Consensus 212 ~l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~~~~ 269 (724)
.+...++.....+..+++....|..++.++...++........|+++...|...+.++
T Consensus 332 el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~ 389 (859)
T PF01576_consen 332 ELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEW 389 (859)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3445556666666777777788888888888888777777777777777776666544
No 26
>PRK01156 chromosome segregation protein; Provisional
Probab=98.83 E-value=0.0012 Score=80.84 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHh
Q 004893 327 LREVQQSMDQLEDELSSWKFL 347 (724)
Q Consensus 327 ~~~le~~~~~Le~el~~w~~~ 347 (724)
...+...+..++....+....
T Consensus 425 i~~l~~~i~~l~~~~~el~~~ 445 (895)
T PRK01156 425 VSSLNQRIRALRENLDELSRN 445 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666665555543
No 27
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.73 E-value=0.003 Score=79.30 Aligned_cols=40 Identities=15% Similarity=0.321 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004893 598 GKITQLKEQIATLEKREERYKTVFADRISVFRRACCELFG 637 (724)
Q Consensus 598 ~~~~~l~~~~~~~~k~~~rlke~f~~k~~efr~a~~~l~G 637 (724)
..+..+-..+.+.-....++.+.+...+..|..++....|
T Consensus 895 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~f~~~l~~~~~ 934 (1201)
T PF12128_consen 895 GSVDERLRDLEDLLQRRKRLREELKKAVERFKGVLTKHSG 934 (1201)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4455666667777777777888888888888877755554
No 28
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.71 E-value=0.002 Score=75.82 Aligned_cols=131 Identities=19% Similarity=0.276 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHhHHH---HHH
Q 004893 136 RERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLSDSIEREKKRLNNEVTQLKRESKSS---ISR 212 (724)
Q Consensus 136 ~e~lk~~l~~~~~l~~~L~~e~~~~~~~e~~~~~l~~~l~~l~~el~e~~~~~e~e~~~L~~~l~~L~~e~~~~---~~~ 212 (724)
.+.++.....++++.++++........++.....+...+..+..++..+....+.+...|...+..++.++... +..
T Consensus 404 ~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~ 483 (1293)
T KOG0996|consen 404 EEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEK 483 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 34455555566666666666666666677777777777777777777776666666667777777777666655 445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Q 004893 213 IGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQE 266 (724)
Q Consensus 213 l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~ 266 (724)
++.++.....++..+..+++..+.+++.|........+.+.++...+..+....
T Consensus 484 ~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~ 537 (1293)
T KOG0996|consen 484 LEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESL 537 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777788888888888888888888887777777777776654433
No 29
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.70 E-value=0.0014 Score=74.67 Aligned_cols=229 Identities=17% Similarity=0.218 Sum_probs=105.3
Q ss_pred hhHhhHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHH
Q 004893 60 CRQMVKSDFLDALTNVEKQVRDYQS---KLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLLKEVDDSR 136 (724)
Q Consensus 60 ~~~~~~~~~~~~l~~~e~qi~~le~---~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~~~~~~~~~ 136 (724)
.+.++..++...+..+.-+-.+-.. +++.++-++..++.-+..+..+...++.++.+...+..-.++ -.
T Consensus 228 eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe--------~k 299 (1243)
T KOG0971|consen 228 ELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQE--------AK 299 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH
Confidence 3555555555555554443333332 334445555566666666666666666666655544222222 12
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhHH-----------HHHHHHHHHHHH
Q 004893 137 ERLKKQIQLCSELEA--KHRNELNLR--RKAESAAASAEEKASLLEGKLTHLSDSIE-----------REKKRLNNEVTQ 201 (724)
Q Consensus 137 e~lk~~l~~~~~l~~--~L~~e~~~~--~~~e~~~~~l~~~l~~l~~el~e~~~~~e-----------~e~~~L~~~l~~ 201 (724)
++++.++..+..-.+ .|..++..- ..+..+...+..++++++-+++-+....+ -++..|+.....
T Consensus 300 e~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~r 379 (1243)
T KOG0971|consen 300 ERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNAR 379 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHH
Confidence 222333322222111 122222111 34555555555556555555554432211 112222222222
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccHHHHHHHHHH
Q 004893 202 LKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQE 281 (724)
Q Consensus 202 L~~e~~~~~~~l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~~~~~e~~~~~k~L~~ 281 (724)
|++ .+-++..=....+...+++.+++.....++.++....+.+.+.+..++..+..|+.++...--.+.++-.|.+
T Consensus 380 LKd----alVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtd 455 (1243)
T KOG0971|consen 380 LKD----ALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTD 455 (1243)
T ss_pred HHH----HHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHh
Confidence 221 1111111111122223455666666777777777777777777777777777776666433233444444444
Q ss_pred H-------HHHHHHHHHHHHHHHHhh
Q 004893 282 E-------IRNYEAEVREARKLKASY 300 (724)
Q Consensus 282 q-------l~~le~~~~El~~Lr~~~ 300 (724)
. +.-++...+++..|++.+
T Consensus 456 knlnlEekVklLeetv~dlEalee~~ 481 (1243)
T KOG0971|consen 456 KNLNLEEKVKLLEETVGDLEALEEMN 481 (1243)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 333444444444444444
No 30
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.60 E-value=0.0026 Score=71.40 Aligned_cols=30 Identities=23% Similarity=0.426 Sum_probs=16.7
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 64 VKSDFLDALTNVEKQVRDYQSKLEELNENF 93 (724)
Q Consensus 64 ~~~~~~~~l~~~e~qi~~le~~l~~l~~~l 93 (724)
.-.|++.-+-..+.-|.++.++...+...+
T Consensus 35 s~edlk~r~L~aeniiqdlrserdalhe~l 64 (1265)
T KOG0976|consen 35 SHEDLKKRLLDAENIIQDLRSERDALHESL 64 (1265)
T ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 334565556566666666666555554443
No 31
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.58 E-value=0.0033 Score=71.64 Aligned_cols=24 Identities=8% Similarity=0.141 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHhcceEEe
Q 004893 619 TVFADRISVFRRACCELFGYKIVM 642 (724)
Q Consensus 619 e~f~~k~~efr~a~~~l~Gy~i~~ 642 (724)
=.|...+.+|.+.|....-|=+.+
T Consensus 829 l~~~q~~sEa~edl~~~i~~l~~~ 852 (1243)
T KOG0971|consen 829 LAFGQQVSEALEDLRKHITWLVAV 852 (1243)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888777665544
No 32
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.48 E-value=0.0048 Score=68.56 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004893 499 SLSEKLNNEERRIKSLERENDRLRSEISLLESKLGH 534 (724)
Q Consensus 499 ~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~~ 534 (724)
.+...+.-++.+...|..++..|...+..|+.+++.
T Consensus 421 Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~ 456 (546)
T PF07888_consen 421 ELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDK 456 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566667777777777777777777763
No 33
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.45 E-value=0.006 Score=68.64 Aligned_cols=61 Identities=25% Similarity=0.231 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccHHHHHHHHHHHHHHHHH
Q 004893 225 QNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEA 288 (724)
Q Consensus 225 ~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~~~~~e~~~~~k~L~~ql~~le~ 288 (724)
.-+...++.++++..+++...+........++.....|..++. +.+-+++.+++.+..+..
T Consensus 245 tp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElS---qkeelVk~~qeeLd~lkq 305 (1265)
T KOG0976|consen 245 TPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELS---QKEELVKELQEELDTLKQ 305 (1265)
T ss_pred hhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHHHHHH
Confidence 3445678888888888888888888887788887777766554 344455666665554443
No 34
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.40 E-value=0.0073 Score=67.14 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=10.5
Q ss_pred HhHHHHHHHHHHHHhHHH
Q 004893 415 VSKSEVKRIESMLSVVTE 432 (724)
Q Consensus 415 ~~~~~~~rLek~~~~~~~ 432 (724)
.+..-+.+|+.++..+..
T Consensus 442 eL~~yi~~Le~r~~~~~~ 459 (546)
T PF07888_consen 442 ELLEYIERLEQRLDKVAD 459 (546)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 445556667666655543
No 35
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.38 E-value=7.5e-07 Score=105.54 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004893 558 KQTIEALQTELQKTKEKLQAVE 579 (724)
Q Consensus 558 ~~~l~~l~~E~~~L~~~l~~l~ 579 (724)
+..+..|+.++..|+.++..++
T Consensus 509 ~~~~~~Le~e~~~L~~~~~~Le 530 (722)
T PF05557_consen 509 QKEIEELERENERLRQELEELE 530 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778888888877777665
No 36
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.36 E-value=0.012 Score=68.12 Aligned_cols=61 Identities=23% Similarity=0.312 Sum_probs=26.2
Q ss_pred CCCCCCCCCCcccchHHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 43 GRESSHQPSDHLLCTYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYA 110 (724)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~l 110 (724)
+-++++-|.+.+.---. .+..+++.+++.|..++.++++--..+-.+..+++.+..++..+
T Consensus 157 ~~~~~~sp~~~~~~~~~-------hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~kl 217 (1195)
T KOG4643|consen 157 GKELYKSPYDIVVKKNL-------HLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKL 217 (1195)
T ss_pred CCCCCCCcchhhcchhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556555443333 34444444444444444444443333333333333333333333
No 37
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.30 E-value=0.017 Score=66.79 Aligned_cols=341 Identities=15% Similarity=0.218 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccc-cHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 216 DLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTT-DSNILVKHLQEEIRNYEAEVREAR 294 (724)
Q Consensus 216 ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~~~~~-e~~~~~k~L~~ql~~le~~~~El~ 294 (724)
.+......+..++..+..+...++++...-......+..+......+...+-... ........|..++..++.......
T Consensus 106 ~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~ 185 (569)
T PRK04778 106 EINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFV 185 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555554444444444444444433332221100 112223345555555555544444
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHhhhcC--CCCC-CCCchHHHHHHHHHH
Q 004893 295 KLKASYENTELLKEKLLEEKSRRERVEQELAKLREVQQSMDQ-LEDELSSWKFLIRDI--PGVS-CSEDIPVKFAALQKE 370 (724)
Q Consensus 295 ~Lr~~~~~~ellkee~~~lq~kl~~~E~~~~~~~~le~~~~~-Le~el~~w~~~~~~~--~~~~-~~~~l~~~~~~Lq~e 370 (724)
.|-.... ..-.++-+..++..+..++.....+..+=..+.. +=.++.+...-+... .|.. ...+++..+..++..
T Consensus 186 ~l~~~Gd-~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~ 264 (569)
T PRK04778 186 ELTESGD-YVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQ 264 (569)
T ss_pred HHhcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Confidence 4332221 1111122223333333333333333222222221 223333333222221 1211 234678888888888
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-------hHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 004893 371 VIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEV-------SKSEVKRIESMLSVVTEERDKLRNVVNE 443 (724)
Q Consensus 371 ~~~l~~~~~~~~~~~~~le~~~~~~e~ek~~le~e~~~l~~~~~~-------~~~~~~rLek~~~~~~~er~~lr~~l~~ 443 (724)
+......++.+..+ ..+..+.. +...+..+...++. ......++...+..+......+...++.
T Consensus 265 i~~~~~~l~~l~l~--~~~~~~~~-------i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~ 335 (569)
T PRK04778 265 IDENLALLEELDLD--EAEEKNEE-------IQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDR 335 (569)
T ss_pred HHHHHHHHHhcChH--HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87766666655332 21122211 11112222222222 2223334444444444444444444444
Q ss_pred ccCCCCCCCCcchhchHhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 444 FKKPKNDGGGDERANLTLTKELESSLAKKEEFIEELESNLHAQ-------QEINSRQRDEIKSLSEKLNNEERRIKSLER 516 (724)
Q Consensus 444 ~~~e~~~~~~~~~~~~~~~~~le~~l~~~~~~i~~Le~~l~~~-------~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~ 516 (724)
+.....=..++ ......++..+..+...+..+...+... ......+...+..+......+...+..|..
T Consensus 336 l~~sY~l~~~e----~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk 411 (569)
T PRK04778 336 VKQSYTLNESE----LESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRK 411 (569)
T ss_pred HHHccccCchh----HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43322100000 1234455555555555555555544322 122222333333333334444445555555
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcccchhhhccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 004893 517 ENDRLRSEISLLESKLGHGDFSSENTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQ 576 (724)
Q Consensus 517 e~~~l~~e~~~Le~~l~~~~~~~~~~ril~l~~n~~~~~~~~~~l~~l~~E~~~L~~~l~ 576 (724)
.-...+..+..+...+. .-.+.+..++-|.........+..+..++..|..++.
T Consensus 412 ~E~eAr~kL~~~~~~L~------~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~ 465 (569)
T PRK04778 412 DELEAREKLERYRNKLH------EIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELE 465 (569)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 55555555555555554 1223444455666554456777888888888887665
No 38
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.28 E-value=0.0015 Score=72.36 Aligned_cols=277 Identities=13% Similarity=0.178 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHH
Q 004893 236 NQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTT-----DSNILVKHLQEEIRNYEAEVREARKLKASY-ENTELLKEK 309 (724)
Q Consensus 236 ~el~el~~~l~e~~~~~~~Le~~~~~L~~e~~~~~-----e~~~~~k~L~~ql~~le~~~~El~~Lr~~~-~~~ellkee 309 (724)
.+|.+|...++.+-+.+.-|+.+...|..++..+. +...+......++..+.....+..+-|... ..+.-|+++
T Consensus 42 ~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e 121 (546)
T KOG0977|consen 42 KELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREE 121 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 35555556666666666666666666665554321 222333333334444443333333222222 222234444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 004893 310 LLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQME 389 (724)
Q Consensus 310 ~~~lq~kl~~~E~~~~~~~~le~~~~~Le~el~~w~~~~~~~~~~~~~~~l~~~~~~Lq~e~~~l~~~~~~~~~~~~~le 389 (724)
+.+++.++...+. .....+.++..|...+.... ....-+...++.+..+...|..+++.+...+..+.
T Consensus 122 ~~elr~~~~~~~k----------~~~~~re~~~~~~~~l~~le--Ae~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 122 LKELRKKLEKAEK----------ERRGAREKLDDYLSRLSELE--AEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHHHHHHHH----------HHhhhHHHHHHHhhhhhhhh--hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4444444333222 22233444444544433210 00111334455666677777777777777777776
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhHH----HHHHHHHH----H--HhHHHHHHHHHHHHHhccCCCCCCCCcchhch
Q 004893 390 VALDAAQLGKQSAETEAALVKEKEEVSKS----EVKRIESM----L--SVVTEERDKLRNVVNEFKKPKNDGGGDERANL 459 (724)
Q Consensus 390 ~~~~~~e~ek~~le~e~~~l~~~~~~~~~----~~~rLek~----~--~~~~~er~~lr~~l~~~~~e~~~~~~~~~~~~ 459 (724)
..+++.-..+..++..+..|..++.-+.. .+..+... . ..=....+.|...+.++.++.+.
T Consensus 190 ~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~--------- 260 (546)
T KOG0977|consen 190 KQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEA--------- 260 (546)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHH---------
Confidence 66655444444445555555444443331 11111111 0 00000111111111111111100
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004893 460 TLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLG 533 (724)
Q Consensus 460 ~~~~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~ 533 (724)
....+-+..=.-|+..|..+..............+.++..+...+..++.++.+|+..+..|...|..|+..+.
T Consensus 261 ~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~ 334 (546)
T KOG0977|consen 261 ISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLD 334 (546)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhh
Confidence 00000001112233333333322222222333455667677777778888888888888888888888888775
No 39
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.26 E-value=0.019 Score=66.05 Aligned_cols=76 Identities=18% Similarity=0.249 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-cCCCcccccc---------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 558 KQTIEALQTELQKTKEKLQAVEELKSQ-SGDTGKLVDS---------YISGKITQLKEQIATLEKREERYKTVFADRISV 627 (724)
Q Consensus 558 ~~~l~~l~~E~~~L~~~l~~l~~~~~~-~~~~~~~~~~---------~~~~~~~~l~~~~~~~~k~~~rlke~f~~k~~e 627 (724)
...+-.+..|+..|+.++..|+.+.-+ ++...+|..- ++.....+-...|..+.. =++-...|..+
T Consensus 420 q~~f~~~~~e~adl~e~~e~le~~~~ql~~et~ti~eyi~ly~~qr~~~k~r~~e~~~~i~~l~~----~~e~mk~kl~e 495 (617)
T PF15070_consen 420 QSRFMDLMEEKADLKERVEKLEHRFIQLSGETDTIGEYITLYQSQRAVLKQRHQEKEEYISRLAQ----DREEMKVKLLE 495 (617)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhccCccchhhhhccccccccccchhHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 345567888999999999988876544 2344444221 122222222222322222 23444558888
Q ss_pred HHHHHHHHhc
Q 004893 628 FRRACCELFG 637 (724)
Q Consensus 628 fr~a~~~l~G 637 (724)
..+.|-.|.|
T Consensus 496 lq~lv~~l~~ 505 (617)
T PF15070_consen 496 LQELVLRLVG 505 (617)
T ss_pred HHHHHHHHHh
Confidence 8888888875
No 40
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.22 E-value=0.026 Score=65.72 Aligned_cols=73 Identities=23% Similarity=0.356 Sum_probs=34.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004893 460 TLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKL 532 (724)
Q Consensus 460 ~~~~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l 532 (724)
.++.+++.++..++.++++-...+..-......++.+...++..+....+.+..++..+..+..++..++..+
T Consensus 787 ~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv 859 (1174)
T KOG0933|consen 787 RRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKV 859 (1174)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555544444444444333333444444444444444444555555555555555555444444
No 41
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.05 E-value=0.0076 Score=61.44 Aligned_cols=198 Identities=21% Similarity=0.262 Sum_probs=112.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHH-
Q 004893 65 KSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLLKEVDDSRERLKKQI- 143 (724)
Q Consensus 65 ~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~~~~~~~~~e~lk~~l- 143 (724)
+..+..++..+...+..++..+......+..++.++..++.++..++..+.....++.....++ ..............
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL-~~~e~~~de~er~~k 81 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKL-EEAEKRADESERARK 81 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHH-HHHHHHHHHHCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 4567778888888888888888888888889999999999999999988888888766666555 33333322221111
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHhHHHHH--
Q 004893 144 ----------QLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLSDSIEREKKRLNNEVTQLKRESKSSIS-- 211 (724)
Q Consensus 144 ----------~~~~~l~~~L~~e~~~~~~~e~~~~~l~~~l~~l~~el~e~~~~~e~e~~~L~~~l~~L~~e~~~~~~-- 211 (724)
..+..++..+..-......++..+.+...++..++..|..... ....++..+..|+.+.+.+..
T Consensus 82 ~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEe----R~e~~E~ki~eLE~el~~~~~~l 157 (237)
T PF00261_consen 82 VLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEE----RAEAAESKIKELEEELKSVGNNL 157 (237)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhchhHHHHHHHHHHHHHHH
Confidence 1222333333222222244444455555555555555544432 222333333333333333311
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q 004893 212 -RIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEF 267 (724)
Q Consensus 212 -~l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~~ 267 (724)
.+......+......++..+..|...+.+.-...+.+.+.+..|+..+..|+.++.
T Consensus 158 k~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~ 214 (237)
T PF00261_consen 158 KSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELE 214 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122233333345566666666666666666666666666666666666654443
No 42
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.04 E-value=0.043 Score=61.47 Aligned_cols=18 Identities=39% Similarity=0.503 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004893 559 QTIEALQTELQKTKEKLQ 576 (724)
Q Consensus 559 ~~l~~l~~E~~~L~~~l~ 576 (724)
.-++.|+.+|..|..++.
T Consensus 608 K~ieeLqqeNk~LKKk~~ 625 (786)
T PF05483_consen 608 KNIEELQQENKALKKKIT 625 (786)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 457788889988887765
No 43
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.02 E-value=0.046 Score=61.26 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004893 502 EKLNNEERRIKSLERENDRLRS 523 (724)
Q Consensus 502 ~~l~~l~~~i~~Le~e~~~l~~ 523 (724)
.+++.+..++..|+.+.+.+..
T Consensus 629 kq~~~~eikVn~L~~E~e~~kk 650 (786)
T PF05483_consen 629 KQSNVYEIKVNKLQEELENLKK 650 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555544
No 44
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.99 E-value=0.035 Score=61.92 Aligned_cols=38 Identities=18% Similarity=0.243 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 004893 463 KELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSL 500 (724)
Q Consensus 463 ~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l 500 (724)
...+..+.+++.++..|..++..+-...-.|..++..+
T Consensus 345 ~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~Y 382 (546)
T KOG0977|consen 345 NDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAY 382 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHH
Confidence 34455555566666666666655555555555555543
No 45
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.95 E-value=0.082 Score=61.75 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 004893 599 KITQLKEQIATLE-KREERYKTVFADRISVFRRACCELF 636 (724)
Q Consensus 599 ~~~~l~~~~~~~~-k~~~rlke~f~~k~~efr~a~~~l~ 636 (724)
+..-++.-|..+. ++..-|.-.|.+--..|=..+..|+
T Consensus 1009 Dk~kI~ktI~~lDe~k~~~L~kaw~~VN~dFG~IFs~LL 1047 (1174)
T KOG0933|consen 1009 DKSKIKKTIEKLDEKKREELNKAWEKVNKDFGSIFSTLL 1047 (1174)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhC
Confidence 4444455555554 4455566677777777777777665
No 46
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.93 E-value=0.047 Score=58.21 Aligned_cols=132 Identities=14% Similarity=0.187 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCC-C-----CCCCchHHHHHHHHHHHHHHHHHhhhHH
Q 004893 309 KLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPG-V-----SCSEDIPVKFAALQKEVIDSMMKLGEAN 382 (724)
Q Consensus 309 e~~~lq~kl~~~E~~~~~~~~le~~~~~Le~el~~w~~~~~~~~~-~-----~~~~~l~~~~~~Lq~e~~~l~~~~~~~~ 382 (724)
++..|-.++.. -..+...|+.++..|+.++..|........+ . ....++...|..+..+...+.-+++.+.
T Consensus 5 eL~~LNdRla~---YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~ 81 (312)
T PF00038_consen 5 ELQSLNDRLAS---YIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLK 81 (312)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHH
Confidence 34444444443 3455578888888888888888765322100 0 0112233333444444444444455555
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 004893 383 AQLKQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNE 443 (724)
Q Consensus 383 ~~~~~le~~~~~~e~ek~~le~e~~~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~ 443 (724)
..+..++.........+..++.++..++..++........++.++..+..+++.++...+.
T Consensus 82 ~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~hee 142 (312)
T PF00038_consen 82 EELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEE 142 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhh
Confidence 5555554444444444567788888888888888888888888888888888888765544
No 47
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.91 E-value=0.11 Score=61.81 Aligned_cols=39 Identities=10% Similarity=0.208 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004893 598 GKITQLKEQIATLEKREERYKTVFADRISVFRRACCELF 636 (724)
Q Consensus 598 ~~~~~l~~~~~~~~k~~~rlke~f~~k~~efr~a~~~l~ 636 (724)
..+.+|..-......-.+-|-++-.....||..+++-+.
T Consensus 1110 ~rv~~l~~~t~kr~~~re~l~~Lrk~RldEFm~gf~~Is 1148 (1293)
T KOG0996|consen 1110 KRVAELEKFTQKRDEHREKLEELRKRRLDEFMAGFNIIS 1148 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445555566677788888887654
No 48
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.85 E-value=0.11 Score=60.14 Aligned_cols=63 Identities=21% Similarity=0.323 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004893 464 ELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLG 533 (724)
Q Consensus 464 ~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~ 533 (724)
.+..........+..|...+.. ...+-. ..+..+......+..|..+...+......++.-|.
T Consensus 445 ~y~~~~~~~~~~i~~l~~~L~~-g~VNm~------ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iq 507 (569)
T PRK04778 445 DYLEMFFEVSDEIEALAEELEE-KPINME------AVNRLLEEATEDVETLEEETEELVENATLTEQLIQ 507 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-CCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555667777777777765 322221 22233445555666666666666666666666665
No 49
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.79 E-value=0.14 Score=59.64 Aligned_cols=122 Identities=18% Similarity=0.339 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHhhhHhHHHHH-----------
Q 004893 146 CSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLS---DSIEREKKRLNNEVTQLKRESKSSIS----------- 211 (724)
Q Consensus 146 ~~~l~~~L~~e~~~~~~~e~~~~~l~~~l~~l~~el~e~~---~~~e~e~~~L~~~l~~L~~e~~~~~~----------- 211 (724)
++.+.+++......+..+......+..++.+-..+|.... ..+..+-..+...+..++...++++.
T Consensus 309 ~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk 388 (1200)
T KOG0964|consen 309 IKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSK 388 (1200)
T ss_pred hHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcH
Confidence 4445555555555555555555555556655555555543 33444556677777777777666631
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q 004893 212 -----RIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEF 267 (724)
Q Consensus 212 -----~l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~~ 267 (724)
-+.+++..+...+.........++.++.++...+.+....+..++..+......+.
T Consensus 389 ~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~ 449 (1200)
T KOG0964|consen 389 EERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRME 449 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHH
Confidence 15677777777777777777777888888877777777777777666665554443
No 50
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.77 E-value=0.13 Score=58.59 Aligned_cols=49 Identities=20% Similarity=0.314 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 70 DALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAK 118 (724)
Q Consensus 70 ~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~ 118 (724)
......+.++...+.++..++.++...+..+...-..+.....-+..+.
T Consensus 27 e~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~ 75 (522)
T PF05701_consen 27 ERVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELK 75 (522)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555555555555554444444444444333
No 51
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.76 E-value=0.16 Score=59.30 Aligned_cols=32 Identities=9% Similarity=0.136 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004893 605 EQIATLEKREERYKTVFADRISVFRRACCELF 636 (724)
Q Consensus 605 ~~~~~~~k~~~rlke~f~~k~~efr~a~~~l~ 636 (724)
.++..+..+..++..-|..+..+.-.|-+..+
T Consensus 647 l~ve~l~e~l~~lp~~fkt~n~e~l~V~sn~l 678 (1195)
T KOG4643|consen 647 LQVEDLQEKLRELPLEFKTKNDEILMVGSNIL 678 (1195)
T ss_pred hhHHHHHHHHHhCchhhccccchhhhhhhhhh
Confidence 35667777788888888777666655555444
No 52
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.74 E-value=0.032 Score=53.27 Aligned_cols=170 Identities=19% Similarity=0.230 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhhHHHH
Q 004893 305 LLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQ 384 (724)
Q Consensus 305 llkee~~~lq~kl~~~E~~~~~~~~le~~~~~Le~el~~w~~~~~~~~~~~~~~~l~~~~~~Lq~e~~~l~~~~~~~~~~ 384 (724)
-|.+++..++..+..++..- +.|...+..|...+.+....+.. ...+...+.+|......+.++.+.+.+.
T Consensus 19 ~L~~en~kL~~~ve~~ee~n---a~L~~e~~~L~~q~~s~Qqal~~------aK~l~eEledLk~~~~~lEE~~~~L~aq 89 (193)
T PF14662_consen 19 KLADENAKLQRSVETAEEGN---AQLAEEITDLRKQLKSLQQALQK------AKALEEELEDLKTLAKSLEEENRSLLAQ 89 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555 33444444555554443322211 1112233344444444455555555555
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchhchHhhHH
Q 004893 385 LKQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKE 464 (724)
Q Consensus 385 ~~~le~~~~~~e~ek~~le~e~~~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~~~~e~~~~~~~~~~~~~~~~~ 464 (724)
+.++++. .+.+..++..+..+...+......+.++...+..+...++.++-.|.. .+..
T Consensus 90 ~rqlEkE-------~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~--------------l~~~ 148 (193)
T PF14662_consen 90 ARQLEKE-------QQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFES--------------LICQ 148 (193)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHH--------------HHHH
Confidence 5555444 456666666666666666666666666666666666666666655532 1223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 004893 465 LESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKL 504 (724)
Q Consensus 465 le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l 504 (724)
.+..+.+....|++|...+..+......++.++..+.+++
T Consensus 149 ~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 149 RDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666655555555555554444443
No 53
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.73 E-value=0.095 Score=55.86 Aligned_cols=38 Identities=29% Similarity=0.477 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 004893 226 NAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSST 263 (724)
Q Consensus 226 ~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~ 263 (724)
.++-++..+..++.+++.+++........++..+..+.
T Consensus 72 ~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lr 109 (312)
T PF00038_consen 72 RLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLR 109 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33334444444444444444444444444444444333
No 54
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.71 E-value=0.14 Score=57.22 Aligned_cols=57 Identities=11% Similarity=0.254 Sum_probs=37.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHch
Q 004893 64 VKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAER--KKFRDQFLYAEQELAAAKGR 120 (724)
Q Consensus 64 ~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~--~~lq~~l~~le~el~~~~~~ 120 (724)
.+.++..-+..+++.+..+-.+...++.++..+..+. .-+.+.+.....-|..+..+
T Consensus 403 l~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~E 461 (961)
T KOG4673|consen 403 LREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAE 461 (961)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 4568999999999999998888888888876443332 12223444455555555443
No 55
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.70 E-value=0.17 Score=57.77 Aligned_cols=50 Identities=8% Similarity=0.121 Sum_probs=22.5
Q ss_pred hHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 61 RQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYA 110 (724)
Q Consensus 61 ~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~l 110 (724)
.+.++.-+..++.++..++...+......-.+|.....-++.+..+|...
T Consensus 32 ~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~ 81 (522)
T PF05701_consen 32 KETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKA 81 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444444433
No 56
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.68 E-value=0.031 Score=57.00 Aligned_cols=43 Identities=19% Similarity=0.337 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Q 004893 224 AQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQE 266 (724)
Q Consensus 224 ~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~ 266 (724)
-..+......++..+..|..++.++......++..+..|+..+
T Consensus 164 ~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~i 206 (237)
T PF00261_consen 164 EEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEI 206 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555555555555444
No 57
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.64 E-value=0.26 Score=58.29 Aligned_cols=16 Identities=6% Similarity=0.293 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 004893 559 QTIEALQTELQKTKEK 574 (724)
Q Consensus 559 ~~l~~l~~E~~~L~~~ 574 (724)
.+|..|.++.+.+...
T Consensus 1731 aeL~~Le~r~~~vl~~ 1746 (1758)
T KOG0994|consen 1731 AELAGLEKRVESVLDH 1746 (1758)
T ss_pred HHhhhHHHHHHHHHHH
Confidence 4555555555555433
No 58
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.62 E-value=0.29 Score=58.32 Aligned_cols=72 Identities=28% Similarity=0.304 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004893 462 TKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLG 533 (724)
Q Consensus 462 ~~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~ 533 (724)
+..+..++.+....|+..+..+..+......+..+...+...+...+..+.......+.+..++..-+.++.
T Consensus 736 ~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~ 807 (1074)
T KOG0250|consen 736 LEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLR 807 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 344555555555555555555555555445555555555555555555555555555566665555555554
No 59
>PRK11637 AmiB activator; Provisional
Probab=97.57 E-value=0.068 Score=59.67 Aligned_cols=60 Identities=15% Similarity=0.204 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHH
Q 004893 67 DFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQE 126 (724)
Q Consensus 67 ~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~e 126 (724)
+...++..++.++...+.++..++.++..++.++..+..++..+..++..+..++..++.
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ 103 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNK 103 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444444333333
No 60
>PRK11637 AmiB activator; Provisional
Probab=97.47 E-value=0.15 Score=56.84 Aligned_cols=69 Identities=14% Similarity=0.126 Sum_probs=42.4
Q ss_pred hhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHH
Q 004893 60 CRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQL 128 (724)
Q Consensus 60 ~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~ 128 (724)
..+..+.++..++...+.++..++.++..+..++..++.++..++.++..++.++..+..++..++.++
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI 112 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASI 112 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666666666666666666666666666666666666666666666655555544
No 61
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.35 E-value=0.94 Score=57.69 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=21.9
Q ss_pred hccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004893 546 RMVNTLAVDNEAKQTIEALQTELQKTKEKLQAVEELK 582 (724)
Q Consensus 546 ~l~~n~~~~~~~~~~l~~l~~E~~~L~~~l~~l~~~~ 582 (724)
.|..+|..-...+.+......-...+..++-+|.+..
T Consensus 929 ~L~~Dp~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~ 965 (1486)
T PRK04863 929 VLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVV 965 (1486)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554333446666666666667777776666554
No 62
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.5 Score=54.45 Aligned_cols=47 Identities=6% Similarity=0.098 Sum_probs=23.6
Q ss_pred HHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 58 YQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFR 104 (724)
Q Consensus 58 ~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq 104 (724)
...+.+.+.++...-...-..+..+...+..+..++.........+.
T Consensus 148 ~~~l~~~iee~~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~l~~~~ 194 (698)
T KOG0978|consen 148 LEELRDEIEELRELASTRMEELEKLQLYSDEILRQLDRFRVELRSLK 194 (698)
T ss_pred hhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555666665555555444555555544444444444444443333
No 63
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.32 E-value=0.65 Score=55.20 Aligned_cols=63 Identities=24% Similarity=0.289 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhhcccCCCccccccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 558 KQTIEALQTELQKTKEKLQ-AVEELKSQSGDTGKLVDSY--ISGKITQLKEQIATLEKREERYKTVFADRISV 627 (724)
Q Consensus 558 ~~~l~~l~~E~~~L~~~l~-~l~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~k~~~rlke~f~~k~~e 627 (724)
++..+.|+.|-+.|..+-. .|..+.+- ...+ -++-+.....+|..+++++.++-.-.+.+..-
T Consensus 1688 r~rAe~L~~eA~~Ll~~a~~kl~~l~dL-------e~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~~rv~~ 1753 (1758)
T KOG0994|consen 1688 RERAEQLRTEAEKLLGQANEKLDRLKDL-------ELEYLRNEQALEDKAAELAGLEKRVESVLDHINERVLY 1753 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhh
Confidence 4556777777777753322 12211110 0111 13446778889999999998877666555443
No 64
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.28 E-value=0.87 Score=56.00 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=12.7
Q ss_pred HHhhHhhHhHHHHHHHHHHHHHH
Q 004893 58 YQCRQMVKSDFLDALTNVEKQVR 80 (724)
Q Consensus 58 ~~~~~~~~~~~~~~l~~~e~qi~ 80 (724)
|..+..+...+...+..+..++.
T Consensus 173 ~~~l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 173 SELLKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555
No 65
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=97.27 E-value=0.31 Score=50.53 Aligned_cols=48 Identities=10% Similarity=0.174 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 004893 215 ADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSS 262 (724)
Q Consensus 215 ~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L 262 (724)
.++.....++..+..++..-.++....+..+......+.+++.++..+
T Consensus 206 ~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~ 253 (306)
T PF04849_consen 206 KQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQL 253 (306)
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444
No 66
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.26 E-value=0.66 Score=54.07 Aligned_cols=26 Identities=35% Similarity=0.457 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004893 275 LVKHLQEEIRNYEAEVREARKLKASY 300 (724)
Q Consensus 275 ~~k~L~~ql~~le~~~~El~~Lr~~~ 300 (724)
-++.|.+.+..+.....|+.+||...
T Consensus 129 ei~rl~Ee~~~l~~qlee~~rLk~ia 154 (717)
T PF09730_consen 129 EIKRLEEEIELLNSQLEEAARLKEIA 154 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555433
No 67
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.12 E-value=0.54 Score=55.18 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 144 QLCSELEAKHRNELNLRRKAESAAASA 170 (724)
Q Consensus 144 ~~~~~l~~~L~~e~~~~~~~e~~~~~l 170 (724)
..+..++..|..+...+..+|+++.+-
T Consensus 488 q~l~~LEkrL~eE~~~R~~lEkQL~eE 514 (697)
T PF09726_consen 488 QSLQQLEKRLAEERRQRASLEKQLQEE 514 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666665555555443
No 68
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.05 E-value=0.82 Score=51.35 Aligned_cols=83 Identities=17% Similarity=0.226 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHH
Q 004893 364 FAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLG----KQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRN 439 (724)
Q Consensus 364 ~~~Lq~e~~~l~~~~~~~~~~~~~le~~~~~~e~e----k~~le~e~~~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~ 439 (724)
.+.|..+...+.++++.+...+..++..+.....+ ++..+.++.....++.-.-..+.+.+.++..+++++..++.
T Consensus 184 e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ 263 (629)
T KOG0963|consen 184 EAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLRE 263 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777777666542222 12222233333333444444455555666777888888888
Q ss_pred HHHhccC
Q 004893 440 VVNEFKK 446 (724)
Q Consensus 440 ~l~~~~~ 446 (724)
++.....
T Consensus 264 ql~~~N~ 270 (629)
T KOG0963|consen 264 QLAKANS 270 (629)
T ss_pred HHHhhhh
Confidence 8877543
No 69
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.05 E-value=0.97 Score=52.18 Aligned_cols=350 Identities=14% Similarity=0.185 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 164 ESAAASAEEKASLLEGKLTHLSDSIEREKKRLNNEVTQLKRESKSSISRIG-ADLEKMECRAQNAEKESEMLKNQMKDLK 242 (724)
Q Consensus 164 e~~~~~l~~~l~~l~~el~e~~~~~e~e~~~L~~~l~~L~~e~~~~~~~l~-~ele~~~~~~~~~E~e~~~L~~el~el~ 242 (724)
...+..+......+...+-............|+..+..+...+..+..-.. .+.......+..++.....|+..++.+-
T Consensus 135 r~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP 214 (560)
T PF06160_consen 135 REEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIP 214 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 333455555556666666555555555666777777777777666532221 2444455555666666666666666666
Q ss_pred HHHHHHHH----HHHHHHHHHhchhhhhhccc--cHHHHHHHHHHHHHHHHHHHHH--HHHHH----HhhhhHH----HH
Q 004893 243 EQLNECLN----QKSEVEKKLSSSTFQEFSTT--DSNILVKHLQEEIRNYEAEVRE--ARKLK----ASYENTE----LL 306 (724)
Q Consensus 243 ~~l~e~~~----~~~~Le~~~~~L~~e~~~~~--e~~~~~k~L~~ql~~le~~~~E--l~~Lr----~~~~~~e----ll 306 (724)
.-+..+.. ++.+|..-...+..+.=.+. +.......+.+++......... +...+ .....++ .+
T Consensus 215 ~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~l 294 (560)
T PF06160_consen 215 KLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDIL 294 (560)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555443 23444443333332221111 2333333444443333222111 11111 1111111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC-CCCCCCchHHHHHHHHHHHHHHHHHhhhHHHHH
Q 004893 307 KEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIP-GVSCSEDIPVKFAALQKEVIDSMMKLGEANAQL 385 (724)
Q Consensus 307 kee~~~lq~kl~~~E~~~~~~~~le~~~~~Le~el~~w~~~~~~~~-~~~~~~~l~~~~~~Lq~e~~~l~~~~~~~~~~~ 385 (724)
+.+...-..--+........+..+..+...|..++......+.=.. ....+..+...+..+......+...+..-..-.
T Consensus 295 e~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~y 374 (560)
T PF06160_consen 295 EKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPY 374 (560)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCH
Confidence 1111111111112222223334444445555555554443331000 111122233334444444444444444433333
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchhchHhhHHH
Q 004893 386 KQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKEL 465 (724)
Q Consensus 386 ~~le~~~~~~e~ek~~le~e~~~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~~~~e~~~~~~~~~~~~~~~~~l 465 (724)
..+...+..+.......+.+...+...+..+...-.+...++..+.......+..+.... +. +.-..+
T Consensus 375 S~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~n--LP----------Glp~~y 442 (560)
T PF06160_consen 375 SEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSN--LP----------GLPEDY 442 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CC----------CCCHHH
Confidence 444333333222222233333344444444544444444555555555555555555421 11 111334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004893 466 ESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKL 532 (724)
Q Consensus 466 e~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l 532 (724)
..........|..+...|.... -.+..++..+......+..|......+-......|.-+
T Consensus 443 ~~~~~~~~~~i~~l~~~L~~~p-------inm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L~E~~i 502 (560)
T PF06160_consen 443 LDYFFDVSDEIEELSDELNQVP-------INMDEVNKQLEEAEDDVETLEEKTEELIDNATLAEQLI 502 (560)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666655555322 12223334444444555555555555554444444444
No 70
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.05 E-value=1.3 Score=53.49 Aligned_cols=6 Identities=50% Similarity=0.960 Sum_probs=2.3
Q ss_pred CCCCCC
Q 004893 6 PPPKRP 11 (724)
Q Consensus 6 ~~~~~~ 11 (724)
+||=-|
T Consensus 353 ~pP~vP 358 (1317)
T KOG0612|consen 353 VPPVVP 358 (1317)
T ss_pred CCCCCC
Confidence 344333
No 71
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.94 Score=51.74 Aligned_cols=99 Identities=16% Similarity=0.284 Sum_probs=41.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchhchHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 408 LVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFIEELESNLHAQQ 487 (724)
Q Consensus 408 ~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~~~~e~~~~~~~~~~~~~~~~~le~~l~~~~~~i~~Le~~l~~~~ 487 (724)
....++..++..+..++.++..+.-++..|-.++.....-... ..+....|+........-+..+..+++.+.
T Consensus 483 ~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~-------~~~~~s~L~aa~~~ke~irq~ikdqldels 555 (1118)
T KOG1029|consen 483 LMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKE-------TTQRKSELEAARRKKELIRQAIKDQLDELS 555 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccC-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555555554444433221110 012233444444444444444444444443
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHH
Q 004893 488 EINSRQRDEIKSLSEKLNNEERRIKS 513 (724)
Q Consensus 488 ~~~~~l~~e~~~l~~~l~~l~~~i~~ 513 (724)
......-.+++.++.++.+++..+..
T Consensus 556 kE~esk~~eidi~n~qlkelk~~~~~ 581 (1118)
T KOG1029|consen 556 KETESKLNEIDIFNNQLKELKEDVNS 581 (1118)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 33333333444444444444444333
No 72
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.03 E-value=1.1 Score=52.59 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cceEEeccccccCC
Q 004893 603 LKEQIATLEKREERYKTVFADRISVFRRACCELF-----GYKIVMDEHQRANG 650 (724)
Q Consensus 603 l~~~~~~~~k~~~rlke~f~~k~~efr~a~~~l~-----Gy~i~~~~~~~~~g 650 (724)
|..-.+.+..-..++.+..+.-=+.--+||...| ||.=.|..- .|.|
T Consensus 989 L~~R~eELd~s~~sI~eLi~vLdqrK~eai~~TFkqV~knFsevF~~L-Vp~G 1040 (1200)
T KOG0964|consen 989 LKKRQEELDRSKDSILELITVLDQRKYEAIDLTFKQVKKNFSEVFSRL-VPGG 1040 (1200)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh-CCCC
Confidence 3333333333333444443333333345555555 555555443 4566
No 73
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.01 E-value=0.69 Score=54.31 Aligned_cols=72 Identities=14% Similarity=0.099 Sum_probs=40.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCC
Q 004893 370 EVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPK 448 (724)
Q Consensus 370 e~~~l~~~~~~~~~~~~~le~~~~~~e~ek~~le~e~~~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~~~~e~ 448 (724)
+...|...+..++.+...|+..+..-..-|..|-..+.+ .+..+.-++..+..-++|+..|+..+..+-+-.
T Consensus 588 ~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~-------akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~ 659 (697)
T PF09726_consen 588 DTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGD-------AKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVM 659 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445566666666666666776665433344444333333 444444444555556677777777777665443
No 74
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.00 E-value=1.1 Score=51.83 Aligned_cols=88 Identities=15% Similarity=0.187 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhhH
Q 004893 302 NTELLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEA 381 (724)
Q Consensus 302 ~~ellkee~~~lq~kl~~~E~~~~~~~~le~~~~~Le~el~~w~~~~~~~~~~~~~~~l~~~~~~Lq~e~~~l~~~~~~~ 381 (724)
.+..+.++.......+..+.... ..++..+..+...+...+..+....-.+-|.+....+.....++..+...++..
T Consensus 387 ~l~~ie~~q~~~~~~l~~L~~dE---~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~ 463 (560)
T PF06160_consen 387 QLEEIEEEQEEINESLQSLRKDE---KEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQV 463 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33333333334444444444333 455555666666666666666544112246666666666667777777777766
Q ss_pred HHHHHHHHHHH
Q 004893 382 NAQLKQMEVAL 392 (724)
Q Consensus 382 ~~~~~~le~~~ 392 (724)
--.+..+...+
T Consensus 464 pinm~~v~~~l 474 (560)
T PF06160_consen 464 PINMDEVNKQL 474 (560)
T ss_pred CcCHHHHHHHH
Confidence 66666555544
No 75
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.98 E-value=0.59 Score=54.18 Aligned_cols=102 Identities=16% Similarity=0.191 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhcc
Q 004893 190 REKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFST 269 (724)
Q Consensus 190 ~e~~~L~~~l~~L~~e~~~~~~~l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~~~~ 269 (724)
..+..|...+..++.+...+...+ .+++........+...+..+...+...+..+.........++..+..|+....+
T Consensus 299 ~~~~~l~d~i~~l~~~l~~l~~~i-~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~- 376 (562)
T PHA02562 299 DRITKIKDKLKELQHSLEKLDTAI-DELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVD- 376 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-
Confidence 344455555555555544442211 222222333444455555555566666666655556666666666666544332
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 270 TDSNILVKHLQEEIRNYEAEVREARK 295 (724)
Q Consensus 270 ~e~~~~~k~L~~ql~~le~~~~El~~ 295 (724)
...-...+..++..+.....++.+
T Consensus 377 --~~~~l~~l~~~l~~~~~~~~~~~k 400 (562)
T PHA02562 377 --NAEELAKLQDELDKIVKTKSELVK 400 (562)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233444444444444444443
No 76
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.95 E-value=0.00054 Score=81.31 Aligned_cols=26 Identities=4% Similarity=-0.058 Sum_probs=15.7
Q ss_pred CCCCCcccchHHhhHhhHhHHHHHHH
Q 004893 48 HQPSDHLLCTYQCRQMVKSDFLDALT 73 (724)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~l~ 73 (724)
+.|.|..+.-|+++.....-+..-+.
T Consensus 59 ~~~~~nw~lr~~NLk~l~~~i~~yy~ 84 (713)
T PF05622_consen 59 EDVGDNWRLRVSNLKKLLRNIKSYYQ 84 (713)
T ss_dssp SGGGG-SHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 44566666677777777666655444
No 77
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.94 E-value=0.97 Score=50.32 Aligned_cols=14 Identities=21% Similarity=0.423 Sum_probs=5.7
Q ss_pred HHHHHHHHhhhhHH
Q 004893 291 REARKLKASYENTE 304 (724)
Q Consensus 291 ~El~~Lr~~~~~~e 304 (724)
.++..|.....++.
T Consensus 439 ~~~~tLq~~~~~~~ 452 (581)
T KOG0995|consen 439 NELETLQEHFSNKA 452 (581)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444433
No 78
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.92 E-value=0.26 Score=49.54 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004893 162 KAESAAASAEEKASLLEGKLTHL 184 (724)
Q Consensus 162 ~~e~~~~~l~~~l~~l~~el~e~ 184 (724)
++..++..+..+...++.++.++
T Consensus 93 aL~~E~~~ak~r~~~le~el~~l 115 (239)
T COG1579 93 ALNIEIQIAKERINSLEDELAEL 115 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555554444
No 79
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.91 E-value=0.00057 Score=81.07 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004893 599 KITQLKEQIATLEKREERYKTVF 621 (724)
Q Consensus 599 ~~~~l~~~~~~~~k~~~rlke~f 621 (724)
++..|+.++...++++..|.--|
T Consensus 623 e~~~L~~ql~e~~~~i~~lE~~~ 645 (713)
T PF05622_consen 623 EIQALKKQLQEKDRRIESLEKEL 645 (713)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555444
No 80
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.86 E-value=0.36 Score=55.95 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=7.6
Q ss_pred CCeeEEeecCCceeec
Q 004893 667 DEKLEFEYESSNTNIM 682 (724)
Q Consensus 667 ~~~l~f~~~~~~~~~~ 682 (724)
+..+++...+|.-.|+
T Consensus 544 d~~~~l~~~~~~~~~~ 559 (562)
T PHA02562 544 DRHLKMEKVGRFSVMV 559 (562)
T ss_pred hcEEEEEEECCeeEEe
Confidence 3456665544433333
No 81
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.76 E-value=0.81 Score=46.87 Aligned_cols=39 Identities=13% Similarity=0.080 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 146 CSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHL 184 (724)
Q Consensus 146 ~~~l~~~L~~e~~~~~~~e~~~~~l~~~l~~l~~el~e~ 184 (724)
+.-+-..|..+...+..++.++.+....+...-.+.+..
T Consensus 72 Nt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqs 110 (305)
T PF14915_consen 72 NTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQS 110 (305)
T ss_pred HHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 333444455555555566666666666665555555544
No 82
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.72 E-value=1.9 Score=50.45 Aligned_cols=52 Identities=21% Similarity=0.308 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Q 004893 215 ADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQE 266 (724)
Q Consensus 215 ~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~ 266 (724)
.++..++.++..++.+...|...+.+.+.+++...........++..|...+
T Consensus 265 ~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l 316 (717)
T PF09730_consen 265 SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQL 316 (717)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777888888888888888888777777666666666665444
No 83
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.69 E-value=1.8 Score=49.90 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 217 LEKMECRAQNAEKESEMLKNQMKDLKEQLN 246 (724)
Q Consensus 217 le~~~~~~~~~E~e~~~L~~el~el~~~l~ 246 (724)
+..++.....+..++..-++....|...++
T Consensus 449 ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e 478 (594)
T PF05667_consen 449 IKELREEIKEIEEEIRQKEELYKQLVKELE 478 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444333
No 84
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.65 E-value=0.68 Score=44.47 Aligned_cols=184 Identities=15% Similarity=0.187 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhh
Q 004893 323 ELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSA 402 (724)
Q Consensus 323 ~~~~~~~le~~~~~Le~el~~w~~~~~~~~~~~~~~~l~~~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~~~~e~ek~~l 402 (724)
+...+.+|+....+|..+.......++.. ......|..++..+...+..++.++.. . ..+
T Consensus 6 L~~~v~dL~~~n~~L~~en~kL~~~ve~~----------------ee~na~L~~e~~~L~~q~~s~Qqal~~---a-K~l 65 (193)
T PF14662_consen 6 LLSCVEDLQLNNQKLADENAKLQRSVETA----------------EEGNAQLAEEITDLRKQLKSLQQALQK---A-KAL 65 (193)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHH
Confidence 33455667777777777766665543321 112222233333333333333322211 0 122
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchhchHhhHHHHHHHHHHHHHHHHHHHH
Q 004893 403 ETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFIEELESN 482 (724)
Q Consensus 403 e~e~~~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~~~~e~~~~~~~~~~~~~~~~~le~~l~~~~~~i~~Le~~ 482 (724)
+.++++++..+..+....+.|-.+.+..+++...+-..+..+..+.... ......+......+-.....|..+
T Consensus 66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl-------~~e~~~lk~~~~eL~~~~~~Lq~Q 138 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKL-------LAERDGLKKRSKELATEKATLQRQ 138 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHhhhhHHHHHHHHHHhhHHHHHH
Confidence 3444555555555554444444444555555555544444443222100 011112222233333445556666
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004893 483 LHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLG 533 (724)
Q Consensus 483 l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~ 533 (724)
+.++..........+..-+..+..+..-+..+..-...++.++..|+..+.
T Consensus 139 l~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~ 189 (193)
T PF14662_consen 139 LCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLS 189 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655555555555566667778888888888888888888888888875
No 85
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.63 E-value=1 Score=46.19 Aligned_cols=84 Identities=19% Similarity=0.218 Sum_probs=55.2
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-HhHHHHHHHHHHHHhHHHHHHH
Q 004893 358 EDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEE-VSKSEVKRIESMLSVVTEERDK 436 (724)
Q Consensus 358 ~~l~~~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~~~~e~ek~~le~e~~~l~~~~~-~~~~~~~rLek~~~~~~~er~~ 436 (724)
+.+...+.+++.++.-|..++..+..+....++.+...+ ..+.++...+. .....+--|+.+.+.+..++..
T Consensus 217 es~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ-------~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~ 289 (305)
T PF14915_consen 217 ESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQ-------DQFQDIVKKLQAESEKQVLLLEERNKELINECNH 289 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 456778889999999999999999888887776654322 11222111111 1112234477788888888999
Q ss_pred HHHHHHhccCCC
Q 004893 437 LRNVVNEFKKPK 448 (724)
Q Consensus 437 lr~~l~~~~~e~ 448 (724)
++..+-.|..+.
T Consensus 290 LkEr~~qyEkEK 301 (305)
T PF14915_consen 290 LKERLYQYEKEK 301 (305)
T ss_pred HHHHHHHHHHHh
Confidence 988887776543
No 86
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.59 E-value=2.6 Score=50.54 Aligned_cols=64 Identities=13% Similarity=0.154 Sum_probs=39.0
Q ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHH
Q 004893 359 DIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKR 422 (724)
Q Consensus 359 ~l~~~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~~~~e~ek~~le~e~~~l~~~~~~~~~~~~r 422 (724)
.+...+.+|+.+...++.++-.+.......+..++.++.....+...+......+......+..
T Consensus 658 s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~e 721 (1074)
T KOG0250|consen 658 SFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTE 721 (1074)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888888888887777777777777777665554444444444443333333333333
No 87
>PRK09039 hypothetical protein; Validated
Probab=96.57 E-value=0.32 Score=52.38 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004893 558 KQTIEALQTELQKTKEKLQAVEE 580 (724)
Q Consensus 558 ~~~l~~l~~E~~~L~~~l~~l~~ 580 (724)
..++..|+.+++.|+.+++.++.
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le~ 158 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALEA 158 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888887764
No 88
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=2.1 Score=49.45 Aligned_cols=43 Identities=2% Similarity=-0.032 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHH
Q 004893 80 RDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREG 122 (724)
Q Consensus 80 ~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~ 122 (724)
.++......++.-+..++-+++.++.....+..+.+.+..+..
T Consensus 653 e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq 695 (970)
T KOG0946|consen 653 EELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQ 695 (970)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555555555544444444444444433
No 89
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.32 E-value=1.6 Score=45.04 Aligned_cols=40 Identities=15% Similarity=0.211 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 004893 80 RDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKG 119 (724)
Q Consensus 80 ~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~ 119 (724)
.++..++..+....+.+......+.+.+..+......+..
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeine 69 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINE 69 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444433344444444443333333333333
No 90
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.32 E-value=1.2 Score=43.64 Aligned_cols=38 Identities=18% Similarity=0.321 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 214 GADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQ 251 (724)
Q Consensus 214 ~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~ 251 (724)
..++.........+..++..+..++..+...+.+.++.
T Consensus 156 ~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer~ 193 (194)
T PF15619_consen 156 RRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKERE 193 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445555555677777777888888777777766543
No 91
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.22 E-value=1 Score=41.87 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHH
Q 004893 68 FLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQL 128 (724)
Q Consensus 68 ~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~ 128 (724)
++.+.......+..++.++-.+.......+.++..|+.++..++.++..+...+......+
T Consensus 5 lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l 65 (143)
T PF12718_consen 5 LKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL 65 (143)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555556666666666666666666667777777777766666666655555444
No 92
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.07 E-value=2.2 Score=44.38 Aligned_cols=9 Identities=33% Similarity=0.674 Sum_probs=6.4
Q ss_pred CCCCCCCcC
Q 004893 7 PPKRPRDAA 15 (724)
Q Consensus 7 ~~~~~~~~~ 15 (724)
|+=++|+|.
T Consensus 5 ~~y~~r~d~ 13 (306)
T PF04849_consen 5 PPYKLRADT 13 (306)
T ss_pred CCCCccccc
Confidence 667788874
No 93
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=96.03 E-value=1.8 Score=42.82 Aligned_cols=37 Identities=14% Similarity=0.157 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 004893 227 AEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSST 263 (724)
Q Consensus 227 ~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~ 263 (724)
+...+...+..+..+...++...+...+|.+.|..|-
T Consensus 166 Lqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI 202 (207)
T PF05010_consen 166 LQASLKKEEMKVQSLEESLEQKTKENEELTKICDELI 202 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555566666666666666553
No 94
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.97 E-value=4.4 Score=46.84 Aligned_cols=58 Identities=16% Similarity=0.250 Sum_probs=40.0
Q ss_pred HHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 58 YQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELA 115 (724)
Q Consensus 58 ~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~ 115 (724)
+...+....++..++..+..++..+...+..+...+..+..+..........++.++.
T Consensus 323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677777777777777777777777777777777666666666666666665555
No 95
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.95 E-value=0.99 Score=41.56 Aligned_cols=72 Identities=25% Similarity=0.333 Sum_probs=44.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchhchHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 408 LVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFIEELESNLHAQQ 487 (724)
Q Consensus 408 ~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~~~~e~~~~~~~~~~~~~~~~~le~~l~~~~~~i~~Le~~l~~~~ 487 (724)
.+..+.++.++.+..|+.++..++..+..+...++.+..+ ...+...+...+.+|.+|+....++.
T Consensus 42 ~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sE--------------k~~L~k~lq~~q~kv~eLE~~~~~~~ 107 (140)
T PF10473_consen 42 CLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSE--------------KENLDKELQKKQEKVSELESLNSSLE 107 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3444455666667777777777777777777666655332 23556666677777777777766655
Q ss_pred HHhHhH
Q 004893 488 EINSRQ 493 (724)
Q Consensus 488 ~~~~~l 493 (724)
......
T Consensus 108 ~~l~~~ 113 (140)
T PF10473_consen 108 NLLQEK 113 (140)
T ss_pred HHHHHH
Confidence 544433
No 96
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.84 E-value=3.5 Score=44.69 Aligned_cols=58 Identities=9% Similarity=0.207 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHH
Q 004893 71 ALTNVEKQVRDYQSKLEELNENFS---KAEAERKKFRDQFLYAEQELAAAKGREGVLQEQL 128 (724)
Q Consensus 71 ~l~~~e~qi~~le~~l~~l~~~l~---~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~ 128 (724)
...-+-.++..++.....+...+. ++...++.+.+++..+........+-.+.+..+.
T Consensus 265 ~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~ 325 (622)
T COG5185 265 FVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKS 325 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 333344444445444444444442 3334445555555555555555554444444433
No 97
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.69 E-value=5.5 Score=45.86 Aligned_cols=73 Identities=22% Similarity=0.338 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhhhHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 004893 191 EKKRLNNEVTQLKRESKSS---ISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSST 263 (724)
Q Consensus 191 e~~~L~~~l~~L~~e~~~~---~~~l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~ 263 (724)
+...|.-.+.+|.....+. +.....+++.........-.+++.|+.+|.+++..+..+.-++..|..++....
T Consensus 445 eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q 520 (1118)
T KOG1029|consen 445 ELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQ 520 (1118)
T ss_pred HHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Confidence 3334444444444444443 222345566666666666677788888888888887777777777777766554
No 98
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.67 E-value=5.9 Score=46.01 Aligned_cols=60 Identities=13% Similarity=0.269 Sum_probs=39.4
Q ss_pred HHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHch
Q 004893 58 YQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGR 120 (724)
Q Consensus 58 ~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~ 120 (724)
.+.+++....+...+. .....|..++..+..++..+..++......+..|+..+..+...
T Consensus 6 l~qlq~Erd~ya~~lk---~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q 65 (617)
T PF15070_consen 6 LKQLQAERDQYAQQLK---EESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQ 65 (617)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555444443 34555677777777777777777777777777777777777654
No 99
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.65 E-value=8.2 Score=47.57 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 227 AEKESEMLKNQMKDLKEQLNECLNQK 252 (724)
Q Consensus 227 ~E~e~~~L~~el~el~~~l~e~~~~~ 252 (724)
+...+..+...+.++...+++....+
T Consensus 408 ~~~~~~e~~~~~~~~~~~l~~~~~~~ 433 (908)
T COG0419 408 IQEELEELEKELEELERELEELEEEI 433 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444433333
No 100
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=6.3 Score=45.73 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=31.1
Q ss_pred HHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHch
Q 004893 58 YQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGR 120 (724)
Q Consensus 58 ~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~ 120 (724)
|..+......+..+...+...+..+......+-.++..+...+.....+...++..++.+.+.
T Consensus 43 ~e~l~~~~~~L~~e~e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~~~~e~~~~le~~~~d 105 (698)
T KOG0978|consen 43 EEALTVLFDELAEENEKLQNLADHLQEKHATLSEQISELLDKISTAETEVDELEQQLEDLQAD 105 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHH
Confidence 335555555555555555555555555555555554444444444444444444444444444
No 101
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.57 E-value=6.4 Score=45.74 Aligned_cols=21 Identities=14% Similarity=0.365 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHhHHhhhc
Q 004893 330 VQQSMDQLEDELSSWKFLIRD 350 (724)
Q Consensus 330 le~~~~~Le~el~~w~~~~~~ 350 (724)
+..++.+=..-..+|+++..+
T Consensus 756 l~~~L~k~~~~~es~k~~~~~ 776 (970)
T KOG0946|consen 756 LTKELNKKNADIESFKATQRS 776 (970)
T ss_pred HHHHHHhhhHHHHHHHHHHhh
Confidence 333333334455677766553
No 102
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=95.51 E-value=4.1 Score=43.18 Aligned_cols=56 Identities=14% Similarity=0.241 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 004893 328 REVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVAL 392 (724)
Q Consensus 328 ~~le~~~~~Le~el~~w~~~~~~~~~~~~~~~l~~~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~ 392 (724)
..+-..+..|+.+-..|+...+.. -..+..+-.+...+..++..+...+..|+..+
T Consensus 247 ekm~Kk~kklEKE~~~~k~k~e~~---------n~~l~~m~eer~~~~~~~~~~~~k~~kLe~Lc 302 (309)
T PF09728_consen 247 EKMSKKIKKLEKENQTWKSKWEKS---------NKALIEMAEERQKLEKELEKLKKKIEKLEKLC 302 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666777777887776543 11333444444444444444444444444443
No 103
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.38 E-value=5.7 Score=43.98 Aligned_cols=61 Identities=13% Similarity=0.140 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhccC
Q 004893 386 KQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKK 446 (724)
Q Consensus 386 ~~le~~~~~~e~ek~~le~e~~~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~~~~ 446 (724)
..|+..+...+.++..+-+.+.+....++..+.....-..++..+...++.++..-++.+.
T Consensus 321 qkLkqqL~smErek~~l~anL~dtqt~le~T~~~l~~~~er~~~l~e~v~al~rlq~~~d~ 381 (772)
T KOG0999|consen 321 QKLKQQLMSMEREKAELLANLQDTQTQLEHTEGDLMEQRERVDRLTEHVQALRRLQDSKDK 381 (772)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Confidence 3333333334444433333333333333333333333334455566666666666555543
No 104
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.34 E-value=5.4 Score=43.46 Aligned_cols=37 Identities=11% Similarity=0.256 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 210 ISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLN 246 (724)
Q Consensus 210 ~~~l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~ 246 (724)
..++..++...+..+..+...-+.|...+..+..+.+
T Consensus 212 ~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA 248 (420)
T COG4942 212 LAQLNSELSADQKKLEELRANESRLKNEIASAEAAAA 248 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555556666666666654444
No 105
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.31 E-value=3.9 Score=41.73 Aligned_cols=63 Identities=14% Similarity=0.269 Sum_probs=30.5
Q ss_pred HHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHch
Q 004893 58 YQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGR 120 (724)
Q Consensus 58 ~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~ 120 (724)
|..-+..++++......++.+|..+..++..+..++.....++...+..+..++.+|..+..+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~ 95 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKEN 95 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555555554444444444444444444444444444444443
No 106
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.17 E-value=2.6 Score=45.51 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=24.9
Q ss_pred CCCCCCcceeeccCCCCCCCCCCCCCCCcccchHHh
Q 004893 25 TAGGSDRRLVIYEDPSPAGRESSHQPSDHLLCTYQC 60 (724)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (724)
++.+.|+.+|-|+...+ .+...+.+.+-|.|--
T Consensus 292 ~~~~~dGklve~~~~~~---~~~~~~~~~~~~~~s~ 324 (493)
T KOG0804|consen 292 PQSKTDGKLVESSTEGD---DSRKDDCDSLELEYSP 324 (493)
T ss_pred cccCCCCceEEeccccc---cccccCcceEEeecch
Confidence 35677899999988555 4566788888888755
No 107
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.16 E-value=7.4 Score=44.05 Aligned_cols=13 Identities=31% Similarity=0.434 Sum_probs=6.9
Q ss_pred HHHHHHHHHHhHH
Q 004893 334 MDQLEDELSSWKF 346 (724)
Q Consensus 334 ~~~Le~el~~w~~ 346 (724)
+..+..++.-.+.
T Consensus 346 YeeIK~ELsiLk~ 358 (629)
T KOG0963|consen 346 YEEIKKELSILKA 358 (629)
T ss_pred HHHHHHHHHHHHH
Confidence 4455556655543
No 108
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.11 E-value=9.3 Score=44.89 Aligned_cols=44 Identities=14% Similarity=0.366 Sum_probs=21.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 63 MVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQ 106 (724)
Q Consensus 63 ~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~ 106 (724)
+-+..+.........-+..++..+..+..++.......+....+
T Consensus 344 ~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e 387 (980)
T KOG0980|consen 344 QLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREE 387 (980)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33333333344455555566666666555554444444433333
No 109
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.99 E-value=5.4 Score=41.56 Aligned_cols=38 Identities=21% Similarity=0.195 Sum_probs=28.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 004893 357 SEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDA 394 (724)
Q Consensus 357 ~~~l~~~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~~~ 394 (724)
+..+...+..|+++...|..++.....+++.|...+..
T Consensus 22 ~~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~ 59 (310)
T PF09755_consen 22 REQLRKRIESLQQENRVLKRELETEKARCKHLQEENRA 59 (310)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777888888888888888888888887776654
No 110
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=94.83 E-value=4.6 Score=39.96 Aligned_cols=41 Identities=15% Similarity=0.224 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 215 ADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEV 255 (724)
Q Consensus 215 ~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~L 255 (724)
+++..++..+.+.+-.+..|+..|..-...++++..-+.+|
T Consensus 161 ~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeL 201 (207)
T PF05010_consen 161 AELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDEL 201 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444444444443
No 111
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.67 E-value=3.7 Score=38.19 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004893 225 QNAEKESEMLKNQMKDLKEQL 245 (724)
Q Consensus 225 ~~~E~e~~~L~~el~el~~~l 245 (724)
..++.+...++..++.+..+.
T Consensus 118 ~~le~~~~~~E~k~eel~~k~ 138 (143)
T PF12718_consen 118 KALEQERDQWEEKYEELEEKY 138 (143)
T ss_pred HHHHhhHHHHHHHHHHHHHHH
Confidence 333344444444444444433
No 112
>PRK09039 hypothetical protein; Validated
Probab=94.65 E-value=2.5 Score=45.53 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHH
Q 004893 367 LQKEVIDSMMKLGEANAQLKQM 388 (724)
Q Consensus 367 Lq~e~~~l~~~~~~~~~~~~~l 388 (724)
|..++.....++..+.+++..+
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L 65 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAEL 65 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHH
Confidence 4444555555555555555443
No 113
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.54 E-value=8.7 Score=41.89 Aligned_cols=13 Identities=38% Similarity=0.483 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 004893 277 KHLQEEIRNYEAE 289 (724)
Q Consensus 277 k~L~~ql~~le~~ 289 (724)
..|...+.+++..
T Consensus 234 ~~L~~~Ias~e~~ 246 (420)
T COG4942 234 SRLKNEIASAEAA 246 (420)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555533
No 114
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.39 E-value=11 Score=42.36 Aligned_cols=36 Identities=14% Similarity=0.184 Sum_probs=14.9
Q ss_pred CCCCCCCCcccch----HHhhHhhHhHHHHHHHHHHHHHH
Q 004893 45 ESSHQPSDHLLCT----YQCRQMVKSDFLDALTNVEKQVR 80 (724)
Q Consensus 45 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~e~qi~ 80 (724)
..+..+|+.+--. |+..-..+.++......+..+|.
T Consensus 213 d~~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~ 252 (581)
T KOG0995|consen 213 DNSSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMIN 252 (581)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455554332 22233344444444444444433
No 115
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=94.33 E-value=19 Score=44.79 Aligned_cols=110 Identities=24% Similarity=0.270 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 004893 463 KELESSLAKKEEFIEELESNLHAQ---QEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLGHGDFSS 539 (724)
Q Consensus 463 ~~le~~l~~~~~~i~~Le~~l~~~---~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~~~~~~~ 539 (724)
..+..++..+..+|+.+...+.+. .....+++.+...+...+..++.++..+..+...-...++.+..... .
T Consensus 791 e~~~~d~~~~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~-----e 865 (1294)
T KOG0962|consen 791 ERFLKDLKLREKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRN-----E 865 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H
Confidence 334444455556666666665541 23445666677777777777777777777777666666666655433 1
Q ss_pred ccchhhhccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 540 ENTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQA 577 (724)
Q Consensus 540 ~~~ril~l~~n~~~~~~~~~~l~~l~~E~~~L~~~l~~ 577 (724)
......++..++.-..+....+..|+.++..+..++..
T Consensus 866 ~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e 903 (1294)
T KOG0962|consen 866 LKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKE 903 (1294)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 22333333333322222344566677777666655553
No 116
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=94.23 E-value=19 Score=44.62 Aligned_cols=40 Identities=5% Similarity=0.044 Sum_probs=21.6
Q ss_pred ccchHHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 54 LLCTYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENF 93 (724)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l 93 (724)
+.-.|+.+.+++.........+......++.....+...+
T Consensus 572 le~~~~~~~~~~~~~~ek~~~l~~~~~~~e~~~~~~~~~~ 611 (1294)
T KOG0962|consen 572 LEKELHKLSKEIQEMEERLRMLQLEEQSLEINRNGIRKDL 611 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 4445666666666666555555555555554444444444
No 117
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=94.10 E-value=9.4 Score=40.49 Aligned_cols=48 Identities=25% Similarity=0.324 Sum_probs=24.8
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 202 LKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECL 249 (724)
Q Consensus 202 L~~e~~~~~~~l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~ 249 (724)
+...+...+..++..++........+-.+...|...+..+-.+.+-.+
T Consensus 108 l~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE 155 (309)
T PF09728_consen 108 LSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELRE 155 (309)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555554444445555555555555555544333
No 118
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=93.92 E-value=15 Score=42.03 Aligned_cols=20 Identities=10% Similarity=0.282 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004893 305 LLKEKLLEEKSRRERVEQEL 324 (724)
Q Consensus 305 llkee~~~lq~kl~~~E~~~ 324 (724)
.++.++..|+.+++..|...
T Consensus 609 ~~R~Ei~~LqrRlqaaE~R~ 628 (961)
T KOG4673|consen 609 MFRGEIEDLQRRLQAAERRC 628 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666555444
No 119
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=93.80 E-value=6.7 Score=37.79 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhHHhhh
Q 004893 328 REVQQSMDQLEDELSSWKFLIR 349 (724)
Q Consensus 328 ~~le~~~~~Le~el~~w~~~~~ 349 (724)
+.+...+.-++.++..|...+.
T Consensus 7 a~lnrri~~leeele~aqErl~ 28 (205)
T KOG1003|consen 7 AALNRRIQLLEEELDRAQERLA 28 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667777777777766554
No 120
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.48 E-value=12 Score=39.69 Aligned_cols=19 Identities=0% Similarity=0.177 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004893 67 DFLDALTNVEKQVRDYQSK 85 (724)
Q Consensus 67 ~~~~~l~~~e~qi~~le~~ 85 (724)
++..-+.+-..-+.+++.+
T Consensus 74 EL~~~I~egr~~~~~~E~e 92 (312)
T smart00787 74 ELKKYISEGRDLFKEIEEE 92 (312)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 121
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.35 E-value=11 Score=38.67 Aligned_cols=64 Identities=13% Similarity=0.272 Sum_probs=31.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHH
Q 004893 65 KSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQL 128 (724)
Q Consensus 65 ~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~ 128 (724)
+..-...+..+......++.+++.+..++..+......++.++.....++..+++++..+.+++
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444455555555555544444445555555555555444444444444443
No 122
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=93.33 E-value=21 Score=42.08 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 226 NAEKESEMLKNQMKDLKEQLNECL 249 (724)
Q Consensus 226 ~~E~e~~~L~~el~el~~~l~e~~ 249 (724)
+.+++...|...+..++.+.....
T Consensus 463 ~~~~~~~~L~d~le~~~~~~~~~~ 486 (980)
T KOG0980|consen 463 DVEEENTNLNDQLEELQRAAGRAE 486 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433
No 123
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.17 E-value=13 Score=39.21 Aligned_cols=71 Identities=20% Similarity=0.194 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004893 463 KELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLG 533 (724)
Q Consensus 463 ~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~ 533 (724)
.++..+-+.|+..+..|-.+|...-..-....-+++++-..-.-+..++..++.++.-+...+...-..+.
T Consensus 157 eEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 157 EELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666677777777777655422211122255555555556667777777777777666666555554
No 124
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.07 E-value=7 Score=35.82 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004893 167 AASAEEKASLLEGKLTHL 184 (724)
Q Consensus 167 ~~~l~~~l~~l~~el~e~ 184 (724)
+..+..........+...
T Consensus 75 ~~~l~~~~~~a~~~l~~~ 92 (132)
T PF07926_consen 75 INELKAEAESAKAELEES 92 (132)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 125
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.45 E-value=20 Score=39.59 Aligned_cols=6 Identities=0% Similarity=0.002 Sum_probs=2.1
Q ss_pred HHHHHH
Q 004893 68 FLDALT 73 (724)
Q Consensus 68 ~~~~l~ 73 (724)
+...+.
T Consensus 86 l~~~~~ 91 (423)
T TIGR01843 86 LESQVL 91 (423)
T ss_pred HHHHHH
Confidence 333333
No 126
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.13 E-value=30 Score=40.88 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004893 226 NAEKESEMLKNQMKDLKEQL 245 (724)
Q Consensus 226 ~~E~e~~~L~~el~el~~~l 245 (724)
.+-.++..++.+++.+..++
T Consensus 395 ~~~~~~~~~e~el~~l~~~l 414 (650)
T TIGR03185 395 QLLKELRELEEELAEVDKKI 414 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444
No 127
>PRK11281 hypothetical protein; Provisional
Probab=91.71 E-value=44 Score=41.80 Aligned_cols=74 Identities=12% Similarity=0.017 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccHHHHHHHHHHHHHHHHHH
Q 004893 214 GADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAE 289 (724)
Q Consensus 214 ~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~~~~~e~~~~~k~L~~ql~~le~~ 289 (724)
..++.+.+..+..+...+..++.+.+..+..+.+......++..++......... -.+.....++.+...+...
T Consensus 134 ~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~--l~~~~~~~l~ae~~~l~~~ 207 (1113)
T PRK11281 134 LDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKA--LRPSQRVLLQAEQALLNAQ 207 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc--CCHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555566666666666666655555555544432211111 1123344556665555544
No 128
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=91.62 E-value=14 Score=35.77 Aligned_cols=114 Identities=20% Similarity=0.286 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHH
Q 004893 146 CSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLSDSIE---REKKRLNNEVTQLKRESKSSISRIGADLEKMEC 222 (724)
Q Consensus 146 ~~~l~~~L~~e~~~~~~~e~~~~~l~~~l~~l~~el~e~~~~~e---~e~~~L~~~l~~L~~e~~~~~~~l~~ele~~~~ 222 (724)
+..+..++..-......+..++.+...+|.-++.+|.......+ .....|..+++.+......+- ..-+.+..
T Consensus 62 ~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~----~~ee~~~q 137 (205)
T KOG1003|consen 62 MEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLS----AKEEKLEQ 137 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH----HHHHHHhh
Confidence 33344444443333356666677777777777777776653332 233344444444443333321 11122223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 004893 223 RAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSST 263 (724)
Q Consensus 223 ~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~ 263 (724)
....++..+..+...|.+.-...+.+.+.+..|+..+..|+
T Consensus 138 ~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE 178 (205)
T KOG1003|consen 138 KEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLE 178 (205)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHH
Confidence 33444455555555555544444444455555544444443
No 129
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.44 E-value=10 Score=34.05 Aligned_cols=48 Identities=23% Similarity=0.426 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 70 DALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAA 117 (724)
Q Consensus 70 ~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~ 117 (724)
.-+..+...|+.++.++..++.++..+..+++.+.++|..+..+.+.+
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777778888888888888888888887777777777765555444
No 130
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=91.33 E-value=28 Score=38.89 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004893 465 LESSLAKKEEFIEELESNLHA 485 (724)
Q Consensus 465 le~~l~~~~~~i~~Le~~l~~ 485 (724)
+-.........++++..+|+.
T Consensus 445 ~l~l~~~~~~~i~~l~~eLse 465 (570)
T COG4477 445 FLSLFFTAGHEIQDLMKELSE 465 (570)
T ss_pred HHHHHHhhhhHHHHHHHHHhh
Confidence 334455556666666666654
No 131
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.02 E-value=39 Score=39.96 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhcC
Q 004893 328 REVQQSMDQLEDELSSWKFLIRDI 351 (724)
Q Consensus 328 ~~le~~~~~Le~el~~w~~~~~~~ 351 (724)
..+..++..++.++......+...
T Consensus 394 ~~~~~~~~~~e~el~~l~~~l~~~ 417 (650)
T TIGR03185 394 SQLLKELRELEEELAEVDKKISTI 417 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444455556666666666655543
No 132
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.84 E-value=45 Score=40.41 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 004893 600 ITQLKEQIATLEKREERYKTVFAD----RISVFRRACCE 634 (724)
Q Consensus 600 ~~~l~~~~~~~~k~~~rlke~f~~----k~~efr~a~~~ 634 (724)
....-++.+.+.|+-.+.++.|.+ ...-|.++|..
T Consensus 963 ~~~~~~EfE~ark~ak~ak~~F~~VK~~R~~~F~~~F~~ 1001 (1141)
T KOG0018|consen 963 FQEINEEFEAARKEAKKAKNAFNKVKKKRYERFMACFEH 1001 (1141)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666642 34445554443
No 133
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.67 E-value=31 Score=38.15 Aligned_cols=6 Identities=0% Similarity=-0.396 Sum_probs=2.2
Q ss_pred hHhhHh
Q 004893 61 RQMVKS 66 (724)
Q Consensus 61 ~~~~~~ 66 (724)
++..+.
T Consensus 86 l~~~~~ 91 (423)
T TIGR01843 86 LESQVL 91 (423)
T ss_pred HHHHHH
Confidence 333333
No 134
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=90.47 E-value=3.8 Score=32.92 Aligned_cols=65 Identities=26% Similarity=0.344 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 464 ELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLL 528 (724)
Q Consensus 464 ~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~L 528 (724)
.|+..+..+++.++.+...+......++.+..+-+....+++..-..+..|..+++.++.++...
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677777888888888888877777777777777777777777788888888888777775543
No 135
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=90.45 E-value=11 Score=38.26 Aligned_cols=33 Identities=21% Similarity=0.208 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 004893 360 IPVKFAALQKEVIDSMMKLGEANAQLKQMEVAL 392 (724)
Q Consensus 360 l~~~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~ 392 (724)
....|..|...+..|+.+...-+-.+..++.++
T Consensus 16 aLqKIqelE~QldkLkKE~qQrQfQleSlEAaL 48 (307)
T PF10481_consen 16 ALQKIQELEQQLDKLKKERQQRQFQLESLEAAL 48 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344455555555556655555555555555544
No 136
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.31 E-value=12 Score=39.20 Aligned_cols=6 Identities=17% Similarity=0.019 Sum_probs=2.4
Q ss_pred CCCCCC
Q 004893 43 GRESSH 48 (724)
Q Consensus 43 ~~~~~~ 48 (724)
+++++|
T Consensus 198 p~n~~~ 203 (365)
T KOG2391|consen 198 PPNASG 203 (365)
T ss_pred CCCccc
Confidence 334444
No 137
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=89.51 E-value=24 Score=35.26 Aligned_cols=34 Identities=9% Similarity=0.117 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 004893 229 KESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSS 262 (724)
Q Consensus 229 ~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L 262 (724)
...+.|+..+..+....+...+.+.+|+.....|
T Consensus 91 ~q~s~Leddlsqt~aikeql~kyiReLEQaNDdL 124 (333)
T KOG1853|consen 91 QQESQLEDDLSQTHAIKEQLRKYIRELEQANDDL 124 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 4445555555555555555555555555555544
No 138
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=89.50 E-value=3.3 Score=40.80 Aligned_cols=64 Identities=36% Similarity=0.484 Sum_probs=48.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 460 TLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRS 523 (724)
Q Consensus 460 ~~~~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~ 523 (724)
..+..+...+..++..+..+...+......+..++.++..++-.++.+..++..|+.++..|-.
T Consensus 116 ~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 116 RRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777888888888888887777777777778777777777777777777777766644
No 139
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=89.43 E-value=30 Score=36.19 Aligned_cols=137 Identities=13% Similarity=0.155 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 004893 328 REVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAA 407 (724)
Q Consensus 328 ~~le~~~~~Le~el~~w~~~~~~~~~~~~~~~l~~~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~~~~e~ek~~le~e~~ 407 (724)
..|..++..|..+..+....+.... ...+..|+..+..|..+.......+..|... |-.++..++
T Consensus 109 n~L~rkl~qLr~EK~~lE~~Le~Eq--------E~~V~kL~k~i~~Le~e~~~~q~~le~Lr~E-------KVdlEn~LE 173 (310)
T PF09755_consen 109 NDLSRKLNQLRQEKVELENQLEQEQ--------EYLVNKLQKKIERLEKEKSAKQEELERLRRE-------KVDLENTLE 173 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------HHhHHHHHH
Confidence 3555556666666665555544320 0112345555555444444444444444332 222222222
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcc--hhchHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 408 LVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDE--RANLTLTKELESSLAKKEEFIEELESNLHA 485 (724)
Q Consensus 408 ~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~~~~e~~~~~~~~--~~~~~~~~~le~~l~~~~~~i~~Le~~l~~ 485 (724)
. .....+++|.+++..+..+...+...++.--....+..... ....+....+.+-+..++..+..|..++..
T Consensus 174 ~------EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~ 247 (310)
T PF09755_consen 174 Q------EQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAA 247 (310)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 35667999999999999999999999886322111110000 001122334555566666666666666644
No 140
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=88.88 E-value=25 Score=34.54 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 004893 82 YQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKG 119 (724)
Q Consensus 82 le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~ 119 (724)
+..++..+...+..+..+...|..-...-...+....+
T Consensus 17 L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~ 54 (194)
T PF15619_consen 17 LQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYED 54 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333333333333333333333333
No 141
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.83 E-value=39 Score=40.21 Aligned_cols=32 Identities=9% Similarity=0.152 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHchHHHHHHHH
Q 004893 97 EAERKKFRDQFLYAEQELAAAKGREGVLQEQL 128 (724)
Q Consensus 97 e~~~~~lq~~l~~le~el~~~~~~~~~l~er~ 128 (724)
..+++....++..+.+++..+......+.+|+
T Consensus 571 k~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~ 602 (717)
T PF10168_consen 571 KQQKEQQLKELQELQEERKSLRESAEKLAERY 602 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444433333334433
No 142
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=88.66 E-value=50 Score=37.77 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=15.0
Q ss_pred hhHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 60 CRQMVKSDFLDALTNVEKQVRDYQSKLEEL 89 (724)
Q Consensus 60 ~~~~~~~~~~~~l~~~e~qi~~le~~l~~l 89 (724)
++......+...+.++...+..+...+..+
T Consensus 106 sl~~e~a~lk~~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 106 SLSSELAVLKIRLQELDQELRRLRRQLEEL 135 (511)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555554
No 143
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.35 E-value=39 Score=36.15 Aligned_cols=49 Identities=14% Similarity=0.185 Sum_probs=30.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 004893 395 AQLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNE 443 (724)
Q Consensus 395 ~e~ek~~le~e~~~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~ 443 (724)
+......+......+...++.+....+++......+..+...+++....
T Consensus 154 L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e 202 (325)
T PF08317_consen 154 LEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE 202 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3433444455555555556666667777777777777777777776665
No 144
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=88.05 E-value=31 Score=34.64 Aligned_cols=38 Identities=16% Similarity=0.288 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 004893 226 NAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSST 263 (724)
Q Consensus 226 ~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~ 263 (724)
.+...+...+..+--|+..+.+..+.+..+.+.+..+.
T Consensus 268 eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~s 305 (330)
T KOG2991|consen 268 ELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVS 305 (330)
T ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555555555555555544443
No 145
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=87.93 E-value=71 Score=38.63 Aligned_cols=15 Identities=33% Similarity=0.550 Sum_probs=10.1
Q ss_pred CCCCCcceeeccCCCC
Q 004893 26 AGGSDRRLVIYEDPSP 41 (724)
Q Consensus 26 ~~~~~~~~~~~~~~~~ 41 (724)
+.| ++.+++|++|..
T Consensus 602 ~yg-s~~v~~~~~~lk 616 (1072)
T KOG0979|consen 602 AYG-SRQVITRNDPLK 616 (1072)
T ss_pred ccc-cceeeecCCcch
Confidence 445 667788887764
No 146
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=87.20 E-value=56 Score=36.65 Aligned_cols=53 Identities=19% Similarity=0.368 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhHHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 004893 334 MDQLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQM 388 (724)
Q Consensus 334 ~~~Le~el~~w~~~~~~~~~~~~~~~l~~~~~~Lq~e~~~l~~~~~~~~~~~~~l 388 (724)
...++..+.+|...+.++. +.-..+...+.+|+++-....+.+..+.+.+...
T Consensus 377 yS~lq~~l~~~~~~l~~i~--~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~ei 429 (570)
T COG4477 377 YSELQDNLEEIEKALTDIE--DEQEKVQEHLTSLRKDELEARENLERLKSKLHEI 429 (570)
T ss_pred HHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444321 0122233344444444444444444444444443
No 147
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=86.89 E-value=53 Score=36.05 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHch
Q 004893 85 KLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGR 120 (724)
Q Consensus 85 ~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~ 120 (724)
-+..|+....+.+..+..|+-.-..|+..+..++..
T Consensus 318 vL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k 353 (527)
T PF15066_consen 318 VLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMK 353 (527)
T ss_pred HHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHH
Confidence 344555555556666666666666666666666654
No 148
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=86.76 E-value=8 Score=38.05 Aligned_cols=66 Identities=20% Similarity=0.237 Sum_probs=11.5
Q ss_pred hHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHH
Q 004893 61 RQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQE 126 (724)
Q Consensus 61 ~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~e 126 (724)
.......+..++..+-+...++...+..+...+..++.........+..+..++..+..++..+.+
T Consensus 72 le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~ 137 (194)
T PF08614_consen 72 LEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEE 137 (194)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555555555555555555555555555555555555444444443333
No 149
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=86.37 E-value=15 Score=39.10 Aligned_cols=64 Identities=22% Similarity=0.311 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchhchHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 417 KSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFIEELESNLHAQQE 488 (724)
Q Consensus 417 ~~~~~rLek~~~~~~~er~~lr~~l~~~~~e~~~~~~~~~~~~~~~~~le~~l~~~~~~i~~Le~~l~~~~~ 488 (724)
...+..++.+...+.++++.+...+........ ....+..+..++..++.+...+..+|..+..
T Consensus 8 ~~l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~--------~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~ 71 (314)
T PF04111_consen 8 DLLLEQLDKQLEQAEKERDTYQEFLKKLEEESD--------SEEDIEELEEELEKLEQEEEELLQELEELEK 71 (314)
T ss_dssp ------------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566667777777888888777776542111 1123344444555555555555444444433
No 150
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=85.87 E-value=45 Score=34.22 Aligned_cols=72 Identities=18% Similarity=0.270 Sum_probs=43.6
Q ss_pred HhcceEEeccccc-cCCc--cceeEEE--eecccCCCCC--eeEEeecCCceeeccCCCCChhhhHHHHHHHhhhcCCcc
Q 004893 635 LFGYKIVMDEHQR-ANGI--PVTHFTL--QSIYAQGDDE--KLEFEYESSNTNIMVNDYTSQPEISRQVDIFVRKMNSIP 707 (724)
Q Consensus 635 l~Gy~i~~~~~~~-~~g~--~~~~~~l--~s~y~~~~~~--~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 707 (724)
=+|+.|+.-.... -||- .++.++| .+.|+.++|. +-+|++..|+-.-++..|. ..|...|..+ .+...|
T Consensus 163 ~yg~~i~~~~~~i~~dG~~~~V~~LrlGr~~l~~~t~Dg~~~g~~~~~~~~W~~l~~~~~--~~i~~ai~ia--~kq~~~ 238 (251)
T PF11932_consen 163 EYGRTIEVYQGTITLDGEERQVDFLRLGRVALYYQTLDGSQAGVWDPATGQWQWLPDSYR--REIRKAIRIA--RKQRAP 238 (251)
T ss_pred HhCCceeEEEEEEeECCeEEEEEEEeecchhheeECCCccceeeecCCCCCCeECCHHHH--HHHHHHHHHH--hCCCCc
Confidence 3688888755422 2552 2333333 4566666654 6677777777777766555 5677776654 556666
Q ss_pred hhh
Q 004893 708 AFT 710 (724)
Q Consensus 708 ~fl 710 (724)
.|+
T Consensus 239 ~l~ 241 (251)
T PF11932_consen 239 ELL 241 (251)
T ss_pred HHh
Confidence 664
No 151
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.78 E-value=66 Score=36.07 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 504 LNNEERRIKSLERENDRLRSEISLLESK 531 (724)
Q Consensus 504 l~~l~~~i~~Le~e~~~l~~e~~~Le~~ 531 (724)
+...+..+-.+..++..+-.-+...+.+
T Consensus 480 l~~A~~~lv~~SdeLaqlyh~vc~~n~e 507 (772)
T KOG0999|consen 480 LVNAQDELVTFSDELAQLYHHVCECNNE 507 (772)
T ss_pred chhhhHhHhhhhHHHHHHHHHHHHHcCC
Confidence 3445566666666666666655555544
No 152
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=85.62 E-value=48 Score=34.30 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004893 232 EMLKNQMKDLKEQLNECL 249 (724)
Q Consensus 232 ~~L~~el~el~~~l~e~~ 249 (724)
......|.+++..+.++.
T Consensus 188 ~~~~~kL~Dl~~~l~eA~ 205 (264)
T PF06008_consen 188 NDYNAKLQDLRDLLNEAQ 205 (264)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444444443333
No 153
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=85.44 E-value=32 Score=32.19 Aligned_cols=52 Identities=31% Similarity=0.475 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHH
Q 004893 77 KQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQL 128 (724)
Q Consensus 77 ~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~ 128 (724)
.....+...+..+...+..+...+..+..++..++.++.....+...+...+
T Consensus 52 ~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~ 103 (151)
T PF11559_consen 52 EQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQL 103 (151)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555666665555555555555544444433
No 154
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=84.47 E-value=40 Score=32.49 Aligned_cols=118 Identities=20% Similarity=0.234 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----
Q 004893 319 RVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDA---- 394 (724)
Q Consensus 319 ~~E~~~~~~~~le~~~~~Le~el~~w~~~~~~~~~~~~~~~l~~~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~~~---- 394 (724)
..+..+-++..++.++..++..+..+....+.. . .-.+.+|+.++..+..++.+-..++..+......
T Consensus 7 ~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L----~----~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~ 78 (177)
T PF13870_consen 7 EISKLRLKNITLKHQLAKLEEQLRQKEELGEGL----H----LIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQI 78 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc----c----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556777777888888888777653221 1 2235678889999999998888888887765432
Q ss_pred HHHhh---hhhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Q 004893 395 AQLGK---QSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEF 444 (724)
Q Consensus 395 ~e~ek---~~le~e~~~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~~ 444 (724)
+.--+ ..+..+...+..++......+.++...+..+..+++.++.....+
T Consensus 79 L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l 131 (177)
T PF13870_consen 79 LTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKL 131 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 222334444444444455555555555555555555555555544
No 155
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.42 E-value=68 Score=35.10 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=15.6
Q ss_pred CCcceeeccCCCCCCCCCCCCCCCc
Q 004893 29 SDRRLVIYEDPSPAGRESSHQPSDH 53 (724)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (724)
+|--.+.-|||.+++.+....|.+.
T Consensus 204 ~df~f~~t~dPa~p~~p~~~~pass 228 (521)
T KOG1937|consen 204 KDFNFKLTDDPALPPKPIFAKPASS 228 (521)
T ss_pred ccccceecCCCCCCCccccCCCccc
Confidence 4555778888887555555544443
No 156
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=84.27 E-value=20 Score=35.16 Aligned_cols=37 Identities=22% Similarity=0.361 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 81 DYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAA 117 (724)
Q Consensus 81 ~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~ 117 (724)
++...+..++.++.+...+...+.+.+..++.+++..
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~ 168 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEV 168 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555544444444433
No 157
>PRK04863 mukB cell division protein MukB; Provisional
Probab=84.17 E-value=1.5e+02 Score=38.68 Aligned_cols=19 Identities=11% Similarity=0.219 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHhHHhh
Q 004893 330 VQQSMDQLEDELSSWKFLI 348 (724)
Q Consensus 330 le~~~~~Le~el~~w~~~~ 348 (724)
+.-.+.+++.-......++
T Consensus 805 ~~~~~~~~~r~~~~~~~~~ 823 (1486)
T PRK04863 805 LSFDVQKLQRLHQAFSRFI 823 (1486)
T ss_pred HhhhHHHHHHHHHHHHHHH
Confidence 3333444444444444443
No 158
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=83.99 E-value=20 Score=34.37 Aligned_cols=64 Identities=28% Similarity=0.459 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 504 LNNEERRIKSLERENDRLRSEISLLESKLGHGDFSSENTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQAVEE 580 (724)
Q Consensus 504 l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~~~~~~~~~~ril~l~~n~~~~~~~~~~l~~l~~E~~~L~~~l~~l~~ 580 (724)
+..+..++..|..++..+...+..|..++. .|...|... +....+..|..|+..|..++..+..
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~------------~L~~~~t~~-el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELA------------SLSSEPTNE-ELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHhcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444445555555555555555555443 123334432 2578899999999999999998874
No 159
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=83.59 E-value=88 Score=35.71 Aligned_cols=32 Identities=22% Similarity=0.248 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 226 NAEKESEMLKNQMKDLKEQLNECLNQKSEVEK 257 (724)
Q Consensus 226 ~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~ 257 (724)
.++.....-..++..++.++.+...++..+..
T Consensus 228 qye~klkstk~e~a~L~Eq~~eK~~e~~rl~~ 259 (861)
T KOG1899|consen 228 QYETKLKSTKGEMAPLREQRSEKNDEEMRLLR 259 (861)
T ss_pred HHHhhcccccchhhhHHHHHhhhhhHHHHHHH
Confidence 34455555666666666666666665544443
No 160
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=83.41 E-value=89 Score=35.65 Aligned_cols=27 Identities=7% Similarity=0.060 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHchHHHHHH
Q 004893 100 RKKFRDQFLYAEQELAAAKGREGVLQE 126 (724)
Q Consensus 100 ~~~lq~~l~~le~el~~~~~~~~~l~e 126 (724)
++.--++|..++.-++.-...+++..+
T Consensus 134 VeaQgEKIrDLE~cie~kr~kLnatEE 160 (861)
T KOG1899|consen 134 VEAQGEKIRDLETCIEEKRNKLNATEE 160 (861)
T ss_pred HHHhhhhHHHHHHHHHHHHhhhchHHH
Confidence 333333444444444433333333333
No 161
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=83.26 E-value=69 Score=34.30 Aligned_cols=57 Identities=23% Similarity=0.251 Sum_probs=27.1
Q ss_pred hHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 61 RQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAA 117 (724)
Q Consensus 61 ~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~ 117 (724)
+.+++.-+..++...+.+....+.+.+..+.++.+.-.+.+..+.+...+.+++...
T Consensus 79 i~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kA 135 (499)
T COG4372 79 IRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKA 135 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555555555444444455444444444444444444444333
No 162
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=83.14 E-value=90 Score=35.51 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 004893 360 IPVKFAALQKEVIDSMMKLGEANAQLKQMEVA 391 (724)
Q Consensus 360 l~~~~~~Lq~e~~~l~~~~~~~~~~~~~le~~ 391 (724)
+...+..+..+......++..+.+.+..++..
T Consensus 202 ~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~ 233 (498)
T TIGR03007 202 YYSEISEAQEELEAARLELNEAIAQRDALKRQ 233 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666665543
No 163
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=82.02 E-value=77 Score=33.96 Aligned_cols=48 Identities=27% Similarity=0.309 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 70 DALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAA 117 (724)
Q Consensus 70 ~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~ 117 (724)
.+++.+..++..+..++.....+....+.+.+..+.++...-.+.+..
T Consensus 74 fqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v 121 (499)
T COG4372 74 FQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAV 121 (499)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555554444444433333
No 164
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=81.46 E-value=67 Score=32.87 Aligned_cols=45 Identities=16% Similarity=0.314 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHch
Q 004893 76 EKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGR 120 (724)
Q Consensus 76 e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~ 120 (724)
+....+++..+..+..+.......+...+..+..|..+.......
T Consensus 4 Er~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeee 48 (246)
T PF00769_consen 4 EREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEE 48 (246)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555554444444433
No 165
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=81.34 E-value=91 Score=34.33 Aligned_cols=25 Identities=20% Similarity=0.301 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 311 LEEKSRRERVEQELAKLREVQQSMD 335 (724)
Q Consensus 311 ~~lq~kl~~~E~~~~~~~~le~~~~ 335 (724)
.+.++..+.+|....++..+.-.+.
T Consensus 403 leaq~~~~slek~~~~~~sl~~~i~ 427 (622)
T COG5185 403 LEAQGIFKSLEKTLRQYDSLIQNIT 427 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555556666555555544433
No 166
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=80.75 E-value=62 Score=32.01 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhhhHhHHHHHH
Q 004893 191 EKKRLNNEVTQLKRESKSSISR 212 (724)
Q Consensus 191 e~~~L~~~l~~L~~e~~~~~~~ 212 (724)
.+.+++.+...|...+...+.+
T Consensus 115 r~~kle~ErdeL~~kf~~~i~e 136 (201)
T PF13851_consen 115 RFEKLEQERDELYRKFESAIQE 136 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555554433
No 167
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=80.69 E-value=1e+02 Score=35.91 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhh
Q 004893 229 KESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQ 265 (724)
Q Consensus 229 ~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e 265 (724)
..+..|..++..++++++++...+..+....+.|-.+
T Consensus 216 e~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e 252 (916)
T KOG0249|consen 216 EDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGE 252 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3445566666666666666665555555555544433
No 168
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=80.37 E-value=37 Score=36.16 Aligned_cols=32 Identities=25% Similarity=0.474 Sum_probs=0.0
Q ss_pred HhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 59 QCRQMVKSDFLDALTNVEKQVRDYQSKLEELN 90 (724)
Q Consensus 59 ~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~ 90 (724)
.|-...+..+..++.....+...|..=+..+.
T Consensus 5 eC~~~l~~~l~~~~~~~~~E~~~Y~~fL~~l~ 36 (314)
T PF04111_consen 5 ECTDLLLEQLDKQLEQAEKERDTYQEFLKKLE 36 (314)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566666666666666666665555554
No 169
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=80.22 E-value=82 Score=33.10 Aligned_cols=6 Identities=50% Similarity=0.739 Sum_probs=2.2
Q ss_pred HHHHHH
Q 004893 194 RLNNEV 199 (724)
Q Consensus 194 ~L~~~l 199 (724)
+|.+++
T Consensus 166 ~LnrEL 171 (401)
T PF06785_consen 166 TLNREL 171 (401)
T ss_pred HHHHHH
Confidence 333333
No 170
>PLN02939 transferase, transferring glycosyl groups
Probab=79.79 E-value=1.6e+02 Score=36.19 Aligned_cols=43 Identities=30% Similarity=0.344 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 004893 278 HLQEEIRNYEAEVREARKLKASYENTELLKEKLLEEKSRRERV 320 (724)
Q Consensus 278 ~L~~ql~~le~~~~El~~Lr~~~~~~ellkee~~~lq~kl~~~ 320 (724)
.|++++..++....+..-.+-....++++.+++.-++.++..-
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (977)
T PLN02939 328 DLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQAS 370 (977)
T ss_pred HHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 4444555555544444433334455566666655555555433
No 171
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.72 E-value=1e+02 Score=33.85 Aligned_cols=20 Identities=5% Similarity=-0.112 Sum_probs=8.7
Q ss_pred CCCCCCCCCCCcccchHHhhH
Q 004893 42 AGRESSHQPSDHLLCTYQCRQ 62 (724)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~ 62 (724)
+|++++. |--....+-+|-.
T Consensus 213 dPa~p~~-p~~~~passe~ee 232 (521)
T KOG1937|consen 213 DPALPPK-PIFAKPASSEEEE 232 (521)
T ss_pred CCCCCCc-cccCCCccccchh
Confidence 4444443 3333444444444
No 172
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.65 E-value=1.1e+02 Score=34.12 Aligned_cols=19 Identities=26% Similarity=0.337 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhHHhhhcC
Q 004893 333 SMDQLEDELSSWKFLIRDI 351 (724)
Q Consensus 333 ~~~~Le~el~~w~~~~~~~ 351 (724)
-+..|+.++..++..+...
T Consensus 404 tikeL~~El~~yrr~i~~~ 422 (613)
T KOG0992|consen 404 TIKELEIELEEYRRAILRN 422 (613)
T ss_pred HHHHHHHHHHHHHHhcccc
Confidence 3567888888887766543
No 173
>PRK10884 SH3 domain-containing protein; Provisional
Probab=78.06 E-value=32 Score=34.14 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004893 234 LKNQMKDLKEQLNECLNQKSEV 255 (724)
Q Consensus 234 L~~el~el~~~l~e~~~~~~~L 255 (724)
|..+...++.++.....++..+
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l 158 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAA 158 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444433333333333
No 174
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=77.91 E-value=1e+02 Score=32.99 Aligned_cols=37 Identities=16% Similarity=0.318 Sum_probs=16.7
Q ss_pred hHHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 57 TYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENF 93 (724)
Q Consensus 57 ~~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l 93 (724)
+|+.-..-+..+..++.++..-...++..++.|+.++
T Consensus 254 ~~~s~~~~l~aileeL~eIk~~q~~Leesye~Lke~~ 290 (455)
T KOG3850|consen 254 PYHSQGAALDAILEELREIKETQALLEESYERLKEQI 290 (455)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4554444444444444444444444444444444443
No 175
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=77.50 E-value=37 Score=27.54 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHH
Q 004893 70 DALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREG 122 (724)
Q Consensus 70 ~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~ 122 (724)
..+..+=..|..++-++..++.+...+..+...+......+..+...+..++.
T Consensus 11 ~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 11 EKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444444444444444444444444433
No 176
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=76.20 E-value=96 Score=31.71 Aligned_cols=73 Identities=10% Similarity=0.088 Sum_probs=39.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Q 004893 372 IDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEF 444 (724)
Q Consensus 372 ~~l~~~~~~~~~~~~~le~~~~~~e~ek~~le~e~~~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~~ 444 (724)
..|.-++..+...|..+++....+.-+.+.-+..+.-+.-.+...+..+.+|+..++....+++.........
T Consensus 63 s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~ 135 (307)
T PF10481_consen 63 SALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSG 135 (307)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3344445555555666665555444444444445555555555666666677666666666666555444433
No 177
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=75.50 E-value=1.3e+02 Score=32.74 Aligned_cols=13 Identities=8% Similarity=0.365 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 004893 81 DYQSKLEELNENF 93 (724)
Q Consensus 81 ~le~~l~~l~~~l 93 (724)
+|..+++..--+|
T Consensus 195 eWklEvERV~PqL 207 (359)
T PF10498_consen 195 EWKLEVERVLPQL 207 (359)
T ss_pred HHHHHHHHHhhhh
Confidence 3444444433333
No 178
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=75.31 E-value=1.7e+02 Score=34.14 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=17.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH
Q 004893 551 LAVDNEAKQTIEALQTELQKTKEKLQ 576 (724)
Q Consensus 551 ~~~~~~~~~~l~~l~~E~~~L~~~l~ 576 (724)
|.+.+ ...+|..|+.|-++|..++.
T Consensus 471 p~~~d-L~~ELqqLReERdRl~aeLq 495 (739)
T PF07111_consen 471 PSVTD-LSLELQQLREERDRLDAELQ 495 (739)
T ss_pred Cchhh-HHHHHHHHHHHHHHHHHHHH
Confidence 43433 46778888888888887766
No 179
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=74.13 E-value=2.4e+02 Score=35.40 Aligned_cols=19 Identities=32% Similarity=0.272 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004893 276 VKHLQEEIRNYEAEVREAR 294 (724)
Q Consensus 276 ~k~L~~ql~~le~~~~El~ 294 (724)
...++.+...++.....+.
T Consensus 175 ~~~lqae~~~l~~~~~~l~ 193 (1109)
T PRK10929 175 LTALQAESAALKALVDELE 193 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555444333
No 180
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=73.64 E-value=1.3e+02 Score=31.96 Aligned_cols=34 Identities=21% Similarity=0.375 Sum_probs=19.3
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhccC
Q 004893 413 EEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKK 446 (724)
Q Consensus 413 ~~~~~~~~~rLek~~~~~~~er~~lr~~l~~~~~ 446 (724)
++.+-.++.-|..++..+..|++.++..+..|.+
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~ 224 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKELLKQTINKYKS 224 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555666666666666666655543
No 181
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=73.51 E-value=92 Score=30.25 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 004893 78 QVRDYQSKLEELNENF 93 (724)
Q Consensus 78 qi~~le~~l~~l~~~l 93 (724)
.+..+..++..+...+
T Consensus 89 ~l~~l~~el~~l~~~~ 104 (191)
T PF04156_consen 89 QLQQLQEELDQLQERI 104 (191)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 182
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=73.22 E-value=92 Score=31.48 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004893 511 IKSLERENDRLRSEISLLESK 531 (724)
Q Consensus 511 i~~Le~e~~~l~~e~~~Le~~ 531 (724)
+..+..+...++.+++.+-..
T Consensus 83 i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 83 IQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444
No 183
>PLN02939 transferase, transferring glycosyl groups
Probab=73.16 E-value=2.4e+02 Score=34.79 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004893 466 ESSLAKKEEFIEELESNLHAQQ 487 (724)
Q Consensus 466 e~~l~~~~~~i~~Le~~l~~~~ 487 (724)
.+.+.-|...+++.+..+..++
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~ 396 (977)
T PLN02939 375 HSYIQLYQESIKEFQDTLSKLK 396 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555543
No 184
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=73.03 E-value=1.6e+02 Score=32.63 Aligned_cols=53 Identities=17% Similarity=0.190 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH
Q 004893 162 KAESAAASAEEKASLLEGKLTHLSDSIEREKKRLNNEVTQLKRESKSSISRIGADLE 218 (724)
Q Consensus 162 ~~e~~~~~l~~~l~~l~~el~e~~~~~e~e~~~L~~~l~~L~~e~~~~~~~l~~ele 218 (724)
.++.....+..-+...+..|.+.. .++..|+-++..++..+..+..+..+++.
T Consensus 387 d~~k~lqnLqe~la~tqk~LqEsr----~eKetLqlelkK~k~nyv~LQEry~~eiQ 439 (527)
T PF15066_consen 387 DIEKTLQNLQEALANTQKHLQESR----NEKETLQLELKKIKANYVHLQERYMTEIQ 439 (527)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333444444444444444444432 34556666666666666666655555543
No 185
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=72.47 E-value=66 Score=28.08 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHHH
Q 004893 169 SAEEKASLLEGKL 181 (724)
Q Consensus 169 ~l~~~l~~l~~el 181 (724)
++...+..++..+
T Consensus 13 el~n~La~Le~sl 25 (107)
T PF09304_consen 13 ELQNRLASLERSL 25 (107)
T ss_dssp -HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 186
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=71.75 E-value=1.5e+02 Score=32.07 Aligned_cols=42 Identities=17% Similarity=0.299 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchH
Q 004893 80 RDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGRE 121 (724)
Q Consensus 80 ~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~ 121 (724)
.+|...++.++.-...+..........+..+..++.....++
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI 257 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKI 257 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 566777777776666666666666666666665555554443
No 187
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=71.74 E-value=40 Score=31.07 Aligned_cols=70 Identities=16% Similarity=0.098 Sum_probs=33.4
Q ss_pred CCCCCCCCcccchHHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 45 ESSHQPSDHLLCTYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQEL 114 (724)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el 114 (724)
++.+.|.+...-+|+.+...+..+...+.+...-+.--..+.+.+......++..+...+..+..+..++
T Consensus 35 ~~~~~~~e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L 104 (139)
T PF05615_consen 35 ILSGQPSEESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEEL 104 (139)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344454444445666666665555555555444444444444444444444444444444443333333
No 188
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=71.39 E-value=47 Score=25.96 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 152 KHRNELNLRRKAESAAASAEEKASLLEGKLTH 183 (724)
Q Consensus 152 ~L~~e~~~~~~~e~~~~~l~~~l~~l~~el~e 183 (724)
.|.+++.....+..++.......-.++..|.+
T Consensus 5 aL~~EirakQ~~~eEL~kvk~~n~~~e~kLqe 36 (61)
T PF08826_consen 5 ALEAEIRAKQAIQEELTKVKSANLAFESKLQE 36 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433333333444433
No 189
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=71.19 E-value=24 Score=33.80 Aligned_cols=63 Identities=27% Similarity=0.324 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 468 SLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKL--NNEERRIKSLERENDRLRSEISLLES 530 (724)
Q Consensus 468 ~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l--~~l~~~i~~Le~e~~~l~~e~~~Le~ 530 (724)
++..+..+|..|..++..+...++.+..++..+...+ .++...+..|+.++..+...+..|..
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555566677777777777777777777777666543 45666666666666666666555544
No 190
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=69.98 E-value=58 Score=26.41 Aligned_cols=28 Identities=14% Similarity=0.187 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 504 LNNEERRIKSLERENDRLRSEISLLESK 531 (724)
Q Consensus 504 l~~l~~~i~~Le~e~~~l~~e~~~Le~~ 531 (724)
...+..++..|..+.......+..|=.+
T Consensus 41 ~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 41 NEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444445555555555444444433
No 191
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=69.39 E-value=1.3e+02 Score=30.35 Aligned_cols=14 Identities=7% Similarity=0.086 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 004893 167 AASAEEKASLLEGK 180 (724)
Q Consensus 167 ~~~l~~~l~~l~~e 180 (724)
+.-+...+..+..+
T Consensus 90 y~~Lk~~in~~R~e 103 (230)
T PF10146_consen 90 YKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444333
No 192
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=69.30 E-value=2.3e+02 Score=33.12 Aligned_cols=90 Identities=12% Similarity=0.185 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhcC--CCCCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 004893 328 REVQQSMDQLEDELSSWKFLIRDI--PGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETE 405 (724)
Q Consensus 328 ~~le~~~~~Le~el~~w~~~~~~~--~~~~~~~~l~~~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~~~~e~ek~~le~e 405 (724)
..+..++..+..++...+....-. +...-...+...+..-.++.....++...+..++..+.+.+.++...+..+...
T Consensus 166 ~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d 245 (916)
T KOG0249|consen 166 RKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTD 245 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444445555555444433211 111112233355554445555556666777777777776666666555555555
Q ss_pred HHHHHHHHHHhH
Q 004893 406 AALVKEKEEVSK 417 (724)
Q Consensus 406 ~~~l~~~~~~~~ 417 (724)
++.+...++.++
T Consensus 246 ~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 246 IEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHH
Confidence 555544444444
No 193
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=69.22 E-value=1.1e+02 Score=29.40 Aligned_cols=83 Identities=16% Similarity=0.196 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 216 DLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREARK 295 (724)
Q Consensus 216 ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~~~~~e~~~~~k~L~~ql~~le~~~~El~~ 295 (724)
...++..++..++..|+.|+.+|+-++..+..+..+...+-.+-..+..+.. .-...++.++..++.+..|--+
T Consensus 58 q~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~------~~~~~~~~klekLe~LE~E~~r 131 (178)
T PF14073_consen 58 QNQDLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQ------QDQSELQAKLEKLEKLEKEYLR 131 (178)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc------cchhhHHHHHHHHHHHHHHHHH
Confidence 3556677788899999999999999999998887665554443343443321 1122456666666666666666
Q ss_pred HHHhhhhHH
Q 004893 296 LKASYENTE 304 (724)
Q Consensus 296 Lr~~~~~~e 304 (724)
|.......+
T Consensus 132 Lt~~Q~~ae 140 (178)
T PF14073_consen 132 LTATQSLAE 140 (178)
T ss_pred HHHHHHHHH
Confidence 655554433
No 194
>PF13514 AAA_27: AAA domain
Probab=69.03 E-value=3.2e+02 Score=34.67 Aligned_cols=32 Identities=6% Similarity=0.153 Sum_probs=18.9
Q ss_pred hHHhhHhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 004893 57 TYQCRQMVKSDFLDALTNVEKQVRDYQSKLEE 88 (724)
Q Consensus 57 ~~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~ 88 (724)
.|..+...+..+...+.....++..+..++..
T Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 274 (1111)
T PF13514_consen 243 RLEQLEEELAEAQAQLERLQEELAQLEEELDA 274 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666666666666666666666665555543
No 195
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=68.94 E-value=1.3e+02 Score=30.04 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 004893 226 NAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSST 263 (724)
Q Consensus 226 ~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~ 263 (724)
.++..+..++.++.......+.+...+..++.++..++
T Consensus 95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k 132 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELK 132 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444443
No 196
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=68.57 E-value=1.2e+02 Score=29.47 Aligned_cols=41 Identities=17% Similarity=0.412 Sum_probs=17.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 64 VKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFR 104 (724)
Q Consensus 64 ~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq 104 (724)
..++....+..+..++.+++..+..+...+..........+
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444444444444444444444444444444433333333
No 197
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=68.54 E-value=1.6e+02 Score=31.01 Aligned_cols=66 Identities=18% Similarity=0.193 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004893 468 SLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLG 533 (724)
Q Consensus 468 ~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~ 533 (724)
-..+.+..+..||..+.++.+.+.+++..++.+....++...+...|.+|..+...-...|..+..
T Consensus 121 vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQ 186 (401)
T PF06785_consen 121 VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQ 186 (401)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445667777778888887777888887777777777777777777888888777777777766654
No 198
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=67.15 E-value=1.1e+02 Score=28.55 Aligned_cols=54 Identities=13% Similarity=0.283 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHH
Q 004893 73 TNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQE 126 (724)
Q Consensus 73 ~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~e 126 (724)
..+...+..+.+.+..+...+..+......++.++...+.....+...+..+..
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~ 108 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEA 108 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444444443333
No 199
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=66.97 E-value=19 Score=38.90 Aligned_cols=71 Identities=13% Similarity=0.152 Sum_probs=38.4
Q ss_pred HHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHH
Q 004893 58 YQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQL 128 (724)
Q Consensus 58 ~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~ 128 (724)
|...-....=+...+...+..+...+..+...+..+..++..+..++.++.....+...+..+......++
T Consensus 209 Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl 279 (344)
T PF12777_consen 209 YYEVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKL 279 (344)
T ss_dssp HHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44444444444555555555555566666666666665555555555555555555555555444444433
No 200
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=66.59 E-value=2.1e+02 Score=31.49 Aligned_cols=32 Identities=16% Similarity=0.404 Sum_probs=16.6
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 62 QMVKSDFLDALTNVEKQVRDYQSKLEELNENF 93 (724)
Q Consensus 62 ~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l 93 (724)
......+..++.+.......++..++.++.++
T Consensus 211 ~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~ 242 (395)
T PF10267_consen 211 NLGLQKILEELREIKESQSRLEESIEKLKEQY 242 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555543
No 201
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=66.28 E-value=2.3e+02 Score=31.83 Aligned_cols=32 Identities=19% Similarity=0.100 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHchHHHHHH
Q 004893 95 KAEAERKKFRDQFLYAEQELAAAKGREGVLQE 126 (724)
Q Consensus 95 ~~e~~~~~lq~~l~~le~el~~~~~~~~~l~e 126 (724)
-+..+....+.++.....++.....+.....+
T Consensus 202 ~~~KelrdtN~q~~s~~eel~~kt~el~~q~E 233 (596)
T KOG4360|consen 202 DCVKELRDTNTQARSGQEELQSKTKELSRQQE 233 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666655555444444
No 202
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=66.03 E-value=33 Score=34.29 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=28.9
Q ss_pred CCCCCCCCCcccchHH--------hhHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 44 RESSHQPSDHLLCTYQ--------CRQMVKSDFLDALTNVEKQVRDYQSKLEELN 90 (724)
Q Consensus 44 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~ 90 (724)
+++.-.|+|.|-.+-+ .|...+.+|...--.-+.++.+++.+++.++
T Consensus 145 pgs~i~P~~EmK~~Nkenylrfa~KLG~~~~efn~~f~she~~l~dkekEl~sfK 199 (311)
T PF04642_consen 145 PGSAIAPFDEMKEVNKENYLRFAGKLGKLILEFNSVFLSHEDQLSDKEKELESFK 199 (311)
T ss_pred CCCCCCChHHHhhhhhhhhhhhHHHHHHHHHHhhccccccccccccHHHHHHHHh
Confidence 3555567777777632 4666666666555555556666666666665
No 203
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=65.85 E-value=3e+02 Score=33.17 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004893 82 YQSKLEELNENFSKAEAERKKF 103 (724)
Q Consensus 82 le~~l~~l~~~l~~~e~~~~~l 103 (724)
+..++..++.++...+..+...
T Consensus 199 L~~ql~~l~~~l~~aE~~l~~f 220 (754)
T TIGR01005 199 LAPEIADLSKQSRDAEAEVAAY 220 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333333
No 204
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=65.52 E-value=73 Score=25.93 Aligned_cols=22 Identities=36% Similarity=0.382 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004893 465 LESSLAKKEEFIEELESNLHAQ 486 (724)
Q Consensus 465 le~~l~~~~~~i~~Le~~l~~~ 486 (724)
++..+......|..|..+...+
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekL 24 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKL 24 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHH
Confidence 3445555566666666555444
No 205
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=64.92 E-value=72 Score=25.63 Aligned_cols=15 Identities=40% Similarity=0.567 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHH
Q 004893 558 KQTIEALQTELQKTK 572 (724)
Q Consensus 558 ~~~l~~l~~E~~~L~ 572 (724)
+.+++.|+.|++.++
T Consensus 53 k~E~e~L~~el~~~r 67 (69)
T PF14197_consen 53 KEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHhh
Confidence 556666666666554
No 206
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=64.71 E-value=1.8e+02 Score=30.22 Aligned_cols=38 Identities=13% Similarity=0.383 Sum_probs=18.8
Q ss_pred CCCcccchHHhhHhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 004893 50 PSDHLLCTYQCRQMVKSDFLDALTNVEKQVRDYQSKLEE 88 (724)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~ 88 (724)
+.-.+.|.. |....+.++...+..+......+..++..
T Consensus 8 ~~~~~~C~~-C~~~~L~~~~~~l~~~~~~~~~l~~~i~~ 45 (302)
T PF10186_consen 8 SRRRFYCAN-CVNNRLLELRSELQQLKEENEELRRRIEE 45 (302)
T ss_pred CCCCeECHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566763 44444555555555544444444444443
No 207
>PRK02119 hypothetical protein; Provisional
Probab=63.65 E-value=53 Score=26.67 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 471 KKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLE 529 (724)
Q Consensus 471 ~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le 529 (724)
.+..+|.+|+..+.....++. .||..+...++.|..|.+.+..+...+..+.
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie-------~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLE-------ELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345666666666665544443 3455555555666666666666665555443
No 208
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=63.51 E-value=16 Score=38.62 Aligned_cols=46 Identities=20% Similarity=0.203 Sum_probs=25.8
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004893 489 INSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLGH 534 (724)
Q Consensus 489 ~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~~ 534 (724)
.+..++..+..+...+..++..+....-.+..|...++.||.....
T Consensus 113 sIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~~s~ 158 (326)
T PF04582_consen 113 SISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESGSSS 158 (326)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred hHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcCCCC
Confidence 3334444455555555566666666666666777777777777553
No 209
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=63.41 E-value=83 Score=25.82 Aligned_cols=60 Identities=12% Similarity=0.211 Sum_probs=23.4
Q ss_pred hHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHch
Q 004893 61 RQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGR 120 (724)
Q Consensus 61 ~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~ 120 (724)
++..+...-+.+.-+.-+|.+++.+-..+..+...+...+..+..+...+..+...+..+
T Consensus 9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wqer 68 (79)
T PRK15422 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQER 68 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444443444444444333333333333333333444444443333333333
No 210
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=62.95 E-value=1.5e+02 Score=28.60 Aligned_cols=36 Identities=28% Similarity=0.392 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhH
Q 004893 170 AEEKASLLEGKLTHLSDSIEREKKRLNNEVTQLKRE 205 (724)
Q Consensus 170 l~~~l~~l~~el~e~~~~~e~e~~~L~~~l~~L~~e 205 (724)
...........+.++...+..++..|+.+++.++-+
T Consensus 118 ~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~ 153 (177)
T PF07798_consen 118 IREEQAKQELKIQELNNKIDTEIANLRTEIESLKWD 153 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444445555555566666677777765544
No 211
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=62.77 E-value=2.4e+02 Score=30.90 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 004893 561 IEALQTELQKTKEKLQAVEELK 582 (724)
Q Consensus 561 l~~l~~E~~~L~~~l~~l~~~~ 582 (724)
...|..|.++|++....|.+.+
T Consensus 405 e~eleqevkrLrq~nr~l~eqn 426 (502)
T KOG0982|consen 405 EIELEQEVKRLRQPNRILSEQN 426 (502)
T ss_pred HHHHHHHHHHhccccchhhhhh
Confidence 3455566666665555555433
No 212
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=62.55 E-value=2.5e+02 Score=31.02 Aligned_cols=9 Identities=22% Similarity=0.169 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 004893 175 SLLEGKLTH 183 (724)
Q Consensus 175 ~~l~~el~e 183 (724)
.+++.....
T Consensus 420 ~~~~e~~~~ 428 (493)
T KOG0804|consen 420 KELEEREKE 428 (493)
T ss_pred HHHHHHHHH
Confidence 333333333
No 213
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=62.35 E-value=2.7e+02 Score=31.40 Aligned_cols=58 Identities=7% Similarity=0.077 Sum_probs=28.5
Q ss_pred HHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 58 YQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELA 115 (724)
Q Consensus 58 ~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~ 115 (724)
|..+.--..++..++..+.......+...-.+-.++..+-..+..-..++..+..++.
T Consensus 15 ~~Ql~~~~~~lqaev~~lr~~~~~~e~~~~~l~~el~qvr~~~~~Q~seL~~l~~ev~ 72 (531)
T PF15450_consen 15 WKQLEQWVAELQAEVACLRGHKERCERATLSLLRELLQVRARVQLQDSELMQLRQEVK 72 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555555555555555555555554444444444444444444433
No 214
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=61.96 E-value=2.7e+02 Score=31.25 Aligned_cols=71 Identities=18% Similarity=0.317 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhh
Q 004893 191 EKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQ 265 (724)
Q Consensus 191 e~~~L~~~l~~L~~e~~~~~~~l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e 265 (724)
+..+|...+..++.+.+....+ .+.+...++.+...-..++.++.+++.+..++.....+.+..+..|..-
T Consensus 234 e~skLlsql~d~qkk~k~~~~E----keel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs~ 304 (596)
T KOG4360|consen 234 ENSKLLSQLVDLQKKIKYLRHE----KEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRSC 304 (596)
T ss_pred HHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3344555555555554443211 2333333334444456778888888888888888888888888877544
No 215
>PRK04406 hypothetical protein; Provisional
Probab=61.44 E-value=69 Score=26.19 Aligned_cols=51 Identities=20% Similarity=0.304 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 471 KKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLL 528 (724)
Q Consensus 471 ~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~L 528 (724)
.+..+|.+|+..+......+. .||..+...++.|..|.+.+..+...+..+
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe-------~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIE-------ELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666677666665554444 344445555566666666666665555443
No 216
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=61.23 E-value=1.1e+02 Score=26.66 Aligned_cols=46 Identities=7% Similarity=0.226 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 68 FLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQE 113 (724)
Q Consensus 68 ~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~e 113 (724)
|.......+..+..++..++..+.....+..+++.|...+..+...
T Consensus 7 l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q 52 (107)
T PF09304_consen 7 LEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQ 52 (107)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555555555544444444333
No 217
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=60.43 E-value=1.6e+02 Score=28.28 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhccC
Q 004893 419 EVKRIESMLSVVTEERDKLRNVVNEFKK 446 (724)
Q Consensus 419 ~~~rLek~~~~~~~er~~lr~~l~~~~~ 446 (724)
.....+.+...+++..+.+|.++.+...
T Consensus 65 qL~aAEtRCslLEKQLeyMRkmv~~ae~ 92 (178)
T PF14073_consen 65 QLSAAETRCSLLEKQLEYMRKMVESAEK 92 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666667777777766443
No 218
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=60.37 E-value=68 Score=28.21 Aligned_cols=54 Identities=24% Similarity=0.351 Sum_probs=35.4
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 63 MVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAA 116 (724)
Q Consensus 63 ~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~ 116 (724)
|.+.++-+.+..++.++..+-.++..++..+..+..+...|+-+...+...+..
T Consensus 1 Mdk~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 1 MDKKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777777777777777777777777766666666655554444444433
No 219
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=59.91 E-value=2.6e+02 Score=30.47 Aligned_cols=67 Identities=16% Similarity=0.189 Sum_probs=49.7
Q ss_pred hHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHH
Q 004893 61 RQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQ 127 (724)
Q Consensus 61 ~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er 127 (724)
+.-.+++..+.+..++.++.+-+.....+..++..+..+...+...+...+-++.+++.+...+.++
T Consensus 4 ~~s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~ 70 (459)
T KOG0288|consen 4 LYSQKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEE 70 (459)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777778888888888888888888888888888888888777777777777665554443
No 220
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.75 E-value=3e+02 Score=31.12 Aligned_cols=46 Identities=24% Similarity=0.309 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 004893 218 EKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSST 263 (724)
Q Consensus 218 e~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~ 263 (724)
..+...+..++.++...+.+++.+-.-+.++...+++-..++..++
T Consensus 424 ~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnDkdkkiaele 469 (654)
T KOG4809|consen 424 KQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELE 469 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhcC
Confidence 3344445566677777777777777777666666665555555554
No 221
>PRK00295 hypothetical protein; Provisional
Probab=59.59 E-value=77 Score=25.33 Aligned_cols=50 Identities=26% Similarity=0.272 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 473 EEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLE 529 (724)
Q Consensus 473 ~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le 529 (724)
..+|.+|+..+.....++. .||..+...++.|..|++.+..+...+..+.
T Consensus 4 e~Ri~~LE~kla~qE~tie-------~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQ-------ALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456666666655444433 3344455555666666666666666555554
No 222
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=58.96 E-value=2.2e+02 Score=29.32 Aligned_cols=102 Identities=20% Similarity=0.260 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 004893 230 ESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREARKLKASYENTELLKEK 309 (724)
Q Consensus 230 e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~~~~~e~~~~~k~L~~ql~~le~~~~El~~Lr~~~~~~ellkee 309 (724)
-+..|+..|.+....+.+.+.+|.+|..++.++.. + | ..++=-++++.. .|++....+..|++-
T Consensus 69 ~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrE---D---W------IEEECHRVEAQL----ALKEARkEIkQLkQv 132 (305)
T PF15290_consen 69 CIRHLKAKLKESENRLHDRETEIDELKSQLARMRE---D---W------IEEECHRVEAQL----ALKEARKEIKQLKQV 132 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---H---H------HHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555431 1 1 011111111110 123333333333333
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHh
Q 004893 310 LLEEKSRRERVEQELAKL-REVQQSMDQLEDELSSWKFL 347 (724)
Q Consensus 310 ~~~lq~kl~~~E~~~~~~-~~le~~~~~Le~el~~w~~~ 347 (724)
....++.|..-++-.+++ .++.+++.+|++=+.+++..
T Consensus 133 ieTmrssL~ekDkGiQKYFvDINiQN~KLEsLLqsMElA 171 (305)
T PF15290_consen 133 IETMRSSLAEKDKGIQKYFVDINIQNKKLESLLQSMELA 171 (305)
T ss_pred HHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHHHHHHHH
Confidence 333344444444444444 68888888999888877644
No 223
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=58.46 E-value=36 Score=26.06 Aligned_cols=57 Identities=18% Similarity=0.326 Sum_probs=31.0
Q ss_pred eeeccCCCCCCCCCCCCCCCcccchHHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 33 LVIYEDPSPAGRESSHQPSDHLLCTYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKK 102 (724)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~ 102 (724)
|-+||+|.+.++..|..-.|.+ -.-.+.+++..|.-++.+++.++.++.+....+..
T Consensus 1 m~~fded~~kka~~~~i~~d~L-------------sllsV~El~eRIalLq~EIeRlkAe~~kK~~srsA 57 (65)
T COG5509 1 MAMFDEDAEKKAFGHEIGNDAL-------------SLLSVAELEERIALLQAEIERLKAELAKKKASRSA 57 (65)
T ss_pred CCcccccccccccccccchhHH-------------HHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccHHH
Confidence 4578888765555555444420 01124455556666666666666666554444433
No 224
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=58.44 E-value=1e+02 Score=25.15 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHH
Q 004893 67 DFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREG 122 (724)
Q Consensus 67 ~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~ 122 (724)
.+...+.+.+.+|..+..+.+.+-..-......+..|+..+..++..+..+..++.
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~ 57 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLE 57 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777777777666666666666666666666666665554433
No 225
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=58.36 E-value=1.2e+02 Score=26.24 Aligned_cols=63 Identities=24% Similarity=0.156 Sum_probs=34.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHH
Q 004893 64 VKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQE 126 (724)
Q Consensus 64 ~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~e 126 (724)
.++.++.+..-+.+.|-+-+.....++..+...+..+..++.++..+...-.++..++..+++
T Consensus 6 eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~ 68 (102)
T PF10205_consen 6 EYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQE 68 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555566666666666555555555555555555544444444444443
No 226
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=57.86 E-value=48 Score=24.15 Aligned_cols=40 Identities=28% Similarity=0.474 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004893 493 QRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKL 532 (724)
Q Consensus 493 l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l 532 (724)
++.+...|...+..+....+.|..++..|..++..|...+
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555666666667777777777777777777666554
No 227
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=57.77 E-value=3.3e+02 Score=30.88 Aligned_cols=196 Identities=19% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHhhhcCCCCCCCCchHHHHHH--------
Q 004893 296 LKASYENTELLKEKLLEEKSRRERVEQELAK-LREVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFAA-------- 366 (724)
Q Consensus 296 Lr~~~~~~ellkee~~~lq~kl~~~E~~~~~-~~~le~~~~~Le~el~~w~~~~~~~~~~~~~~~l~~~~~~-------- 366 (724)
|-....+.+-|.++....+.|+.++|.+.+. +.+.|....+|+.+...|...-........+......-..
T Consensus 297 l~sstes~e~L~qqV~qs~EKIa~LEqEKEHw~LEaQL~kIKLEKEnkRiadLekevak~~v~~s~~e~~~l~~~~e~~s 376 (518)
T PF10212_consen 297 LLSSTESREGLAQQVQQSQEKIAKLEQEKEHWMLEAQLAKIKLEKENKRIADLEKEVAKGQVAESSQESSVLSEASEQQS 376 (518)
T ss_pred HhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhhcccccccc
Q ss_pred ----------HHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 004893 367 ----------LQKEVIDSMMKLGEANA--QLKQMEVALDAAQLGK-QSAETEAALVKEKEEVSKSEVKRIESMLSVVTEE 433 (724)
Q Consensus 367 ----------Lq~e~~~l~~~~~~~~~--~~~~le~~~~~~e~ek-~~le~e~~~l~~~~~~~~~~~~rLek~~~~~~~e 433 (724)
++-.-....-....... +....+..+..-=..+ ..+..++.....+.-.+...+..|.+++...+++
T Consensus 377 e~s~~~~~e~~~~t~l~gml~~~~~~~~~E~esRE~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~e 456 (518)
T PF10212_consen 377 EASSQSVDEPLQPTSLSGMLTSTSEQESPEEESREQLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKE 456 (518)
T ss_pred cccccccccccccccccccccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhccCCCCCCCCcchhchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 004893 434 RDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLS 501 (724)
Q Consensus 434 r~~lr~~l~~~~~e~~~~~~~~~~~~~~~~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~ 501 (724)
+..+...+......+. ..-.+|++--..|+.++..|.+++..++........+++.+.
T Consensus 457 k~~l~eeL~~a~~~i~----------~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 457 KESLEEELKEANQNIS----------RLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 228
>PRK04325 hypothetical protein; Provisional
Probab=57.41 E-value=81 Score=25.69 Aligned_cols=51 Identities=20% Similarity=0.268 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 472 KEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLE 529 (724)
Q Consensus 472 ~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le 529 (724)
+..+|.+||..+.....++. .||..+...++.|..|.+.+..+...+..+.
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe-------~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLID-------GLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556666666665544443 3344445555566666666666655555543
No 229
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=57.35 E-value=2e+02 Score=28.37 Aligned_cols=20 Identities=30% Similarity=0.415 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004893 232 EMLKNQMKDLKEQLNECLNQ 251 (724)
Q Consensus 232 ~~L~~el~el~~~l~e~~~~ 251 (724)
-.|+..+..+...++..+..
T Consensus 146 ~lLEkKl~~l~~~lE~keaq 165 (201)
T PF13851_consen 146 LLLEKKLQALSEQLEKKEAQ 165 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 230
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=57.32 E-value=1.1e+02 Score=26.79 Aligned_cols=55 Identities=18% Similarity=0.273 Sum_probs=29.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 004893 460 TLTKELESSLAKKEEFIEELESNLHAQ--QEINSRQRDEIKSLSEKLNNEERRIKSL 514 (724)
Q Consensus 460 ~~~~~le~~l~~~~~~i~~Le~~l~~~--~~~~~~l~~e~~~l~~~l~~l~~~i~~L 514 (724)
..+..+...+.....++..+|..+.++ ......++..+..++.+++.+..++..+
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344555566666677777777777766 3344444444444444444443333333
No 231
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=57.30 E-value=2.7e+02 Score=32.03 Aligned_cols=20 Identities=15% Similarity=0.199 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004893 165 SAAASAEEKASLLEGKLTHL 184 (724)
Q Consensus 165 ~~~~~l~~~l~~l~~el~e~ 184 (724)
.++..+...+..|+.+|.+.
T Consensus 474 rei~~~~~~I~~L~~~L~e~ 493 (652)
T COG2433 474 REIRARDRRIERLEKELEEK 493 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555444
No 232
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=57.22 E-value=2.6e+02 Score=29.55 Aligned_cols=20 Identities=45% Similarity=0.529 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004893 228 EKESEMLKNQMKDLKEQLNE 247 (724)
Q Consensus 228 E~e~~~L~~el~el~~~l~e 247 (724)
-.+...|..+|..++.++++
T Consensus 225 ~~eke~L~~qv~klk~qLee 244 (302)
T PF09738_consen 225 ADEKEELLEQVRKLKLQLEE 244 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 233
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=57.15 E-value=64 Score=25.83 Aligned_cols=50 Identities=36% Similarity=0.488 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 473 EEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLE 529 (724)
Q Consensus 473 ~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le 529 (724)
..+|.+|+..+......+. .||..+....+.|..|++.+..+...+..+.
T Consensus 3 e~Ri~~LE~~la~qe~~ie-------~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIE-------ELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666666655444433 3344444555566666666666655555544
No 234
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=56.98 E-value=2e+02 Score=28.12 Aligned_cols=64 Identities=23% Similarity=0.383 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 507 EERRIKSLERENDRLRSEISLLESKLGHGDFSSENTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQAVE 579 (724)
Q Consensus 507 l~~~i~~Le~e~~~l~~e~~~Le~~l~~~~~~~~~~ril~l~~n~~~~~~~~~~l~~l~~E~~~L~~~l~~l~ 579 (724)
....+..|..+++.+...+..+...+... + .-+.+..-+...-..++.|+.+++.|..++....
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~-------~--~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~ 130 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEA-------K--KGREESEEREELLEELEELKKELKELKKELEKYS 130 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H--hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555420 0 0011111222335788899999999998888554
No 235
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=56.43 E-value=3.4e+02 Score=30.73 Aligned_cols=39 Identities=8% Similarity=0.193 Sum_probs=27.3
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 004893 358 EDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQ 396 (724)
Q Consensus 358 ~~l~~~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~~~~e 396 (724)
..+...+..++.++..+...++.-...+..++..+..++
T Consensus 250 ~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~ 288 (498)
T TIGR03007 250 SELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLE 288 (498)
T ss_pred CchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHH
Confidence 445666777888888887777777777777766665433
No 236
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=56.40 E-value=3.6e+02 Score=30.90 Aligned_cols=29 Identities=14% Similarity=0.314 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 315 SRRERVEQELAKLREVQQSMDQLEDELSS 343 (724)
Q Consensus 315 ~kl~~~E~~~~~~~~le~~~~~Le~el~~ 343 (724)
.|-..+|.+-.....|..++..++..+..
T Consensus 403 ~KQ~~lE~l~~ek~al~lqlErl~~~l~~ 431 (511)
T PF09787_consen 403 QKQTQLESLGSEKNALRLQLERLETQLKE 431 (511)
T ss_pred HHHHHHHHHHhhhhhccccHHHHHHHHHh
Confidence 44444445555557777777777766654
No 237
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=56.33 E-value=25 Score=37.16 Aligned_cols=38 Identities=18% Similarity=0.277 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004893 495 DEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKL 532 (724)
Q Consensus 495 ~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l 532 (724)
..+..++..+..+.-.+..|........-.|..|+.++
T Consensus 112 ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV 149 (326)
T PF04582_consen 112 SSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRV 149 (326)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHH
Confidence 33333444444444444444444444444444444444
No 238
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=56.30 E-value=1.6e+02 Score=26.99 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004893 558 KQTIEALQTELQKTKEKL 575 (724)
Q Consensus 558 ~~~l~~l~~E~~~L~~~l 575 (724)
.++++.|..||+.|+.-.
T Consensus 81 e~~i~rL~~ENe~lR~Wa 98 (135)
T TIGR03495 81 EQRIERLKRENEDLRRWA 98 (135)
T ss_pred HHHHHHHHHcCHHHHHHh
Confidence 567888888888887553
No 239
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=55.67 E-value=2e+02 Score=27.84 Aligned_cols=31 Identities=13% Similarity=0.266 Sum_probs=23.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 004893 356 CSEDIPVKFAALQKEVIDSMMKLGEANAQLK 386 (724)
Q Consensus 356 ~~~~l~~~~~~Lq~e~~~l~~~~~~~~~~~~ 386 (724)
+++++.+.+.....+...+.-..|.+..+++
T Consensus 17 skeel~~rLR~~E~ek~~~m~~~g~lm~evN 47 (195)
T PF10226_consen 17 SKEELVRRLRRAEAEKMSLMVEHGRLMKEVN 47 (195)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4566777777777788887777777777665
No 240
>PRK04406 hypothetical protein; Provisional
Probab=54.72 E-value=1e+02 Score=25.14 Aligned_cols=49 Identities=6% Similarity=0.165 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHH
Q 004893 80 RDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQL 128 (724)
Q Consensus 80 ~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~ 128 (724)
..++..+..|...+.-.+..++.|++.+..-...+..+..++..+.+++
T Consensus 7 ~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 7 EQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666666666666666666655555555554444
No 241
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=54.68 E-value=1.4e+02 Score=25.64 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHch
Q 004893 73 TNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGR 120 (724)
Q Consensus 73 ~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~ 120 (724)
......+.....++..+...+..+..++.....++..+......+..+
T Consensus 13 ~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e 60 (96)
T PF08647_consen 13 KELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNE 60 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 333333333334444444444444444444444444444444433333
No 242
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=54.42 E-value=2.5e+02 Score=28.50 Aligned_cols=74 Identities=19% Similarity=0.297 Sum_probs=40.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004893 460 TLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLG 533 (724)
Q Consensus 460 ~~~~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~ 533 (724)
..|..|+.++.=-+...++|.+..+.+-.-..++..++...++.+--++.++.+-+.++..+...+..+-..++
T Consensus 236 Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~ 309 (330)
T KOG2991|consen 236 GRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVG 309 (330)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555555555445555555555544444444444555555555555666666666666666665555555444
No 243
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=53.90 E-value=1.2e+02 Score=24.84 Aligned_cols=70 Identities=16% Similarity=0.283 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004893 463 KELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKL 532 (724)
Q Consensus 463 ~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l 532 (724)
..|+..+...=..|.-|.-++.+++..+..+..+.+.+...-..+..+...|..+.......+..|=.++
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555555555666666666666666555555554444444455555555555555555555544433
No 244
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=53.75 E-value=3e+02 Score=29.25 Aligned_cols=32 Identities=13% Similarity=0.241 Sum_probs=12.8
Q ss_pred hhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 60 CRQMVKSDFLDALTNVEKQVRDYQSKLEELNE 91 (724)
Q Consensus 60 ~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~ 91 (724)
|--+...=+.-.-.++.+.|.+...-+.++..
T Consensus 60 ~~iP~LElY~~sC~EL~~~I~egr~~~~~~E~ 91 (312)
T smart00787 60 CTVPLLELYQFSCKELKKYISEGRDLFKEIEE 91 (312)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443333333
No 245
>PRK02793 phi X174 lysis protein; Provisional
Probab=53.74 E-value=1e+02 Score=24.95 Aligned_cols=51 Identities=22% Similarity=0.197 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 472 KEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLE 529 (724)
Q Consensus 472 ~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le 529 (724)
+..+|.+|+..+......+. .||..+...++.|..|.+.+..+...+..+.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe-------~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 6 LEARLAELESRLAFQEITIE-------ELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45666667666665554444 3444455555666666666666655555443
No 246
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=53.67 E-value=3.8e+02 Score=32.19 Aligned_cols=31 Identities=13% Similarity=0.345 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 228 EKESEMLKNQMKDLKEQLNECLNQKSEVEKK 258 (724)
Q Consensus 228 E~e~~~L~~el~el~~~l~e~~~~~~~Le~~ 258 (724)
.+-..-+.+++..++.+++..+..+.....+
T Consensus 266 ~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~ 296 (726)
T PRK09841 266 SQSLEFLQRQLPEVRSELDQAEEKLNVYRQQ 296 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555554444443
No 247
>PRK02119 hypothetical protein; Provisional
Probab=53.52 E-value=1.1e+02 Score=24.77 Aligned_cols=52 Identities=21% Similarity=0.204 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 004893 463 KELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSL 514 (724)
Q Consensus 463 ~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~L 514 (724)
..++.-+..++.++.-.+..++.++..+.+.+.++..+..++..+..++..+
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666666777777777777777766666666666666666555555443
No 248
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=53.06 E-value=3e+02 Score=29.06 Aligned_cols=8 Identities=38% Similarity=0.663 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 004893 67 DFLDALTN 74 (724)
Q Consensus 67 ~~~~~l~~ 74 (724)
++...+.+
T Consensus 81 ~lk~~l~e 88 (302)
T PF09738_consen 81 DLKDSLAE 88 (302)
T ss_pred HHHHHHHH
Confidence 33333333
No 249
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=52.91 E-value=2.1e+02 Score=29.36 Aligned_cols=31 Identities=23% Similarity=0.215 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 004893 403 ETEAALVKEKEEVSKSEVKRIESMLSVVTEE 433 (724)
Q Consensus 403 e~e~~~l~~~~~~~~~~~~rLek~~~~~~~e 433 (724)
+.++..+..+++.++..+.+||..+..+...
T Consensus 5 q~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 5 QKELSELEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445555556666777777777765555533
No 250
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=52.71 E-value=36 Score=36.79 Aligned_cols=72 Identities=17% Similarity=0.311 Sum_probs=52.7
Q ss_pred cchHHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHH
Q 004893 55 LCTYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQE 126 (724)
Q Consensus 55 ~~~~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~e 126 (724)
+|.|=+=...+.+....+.-....+..++.++......+......+..++..+..+..++.....+...++.
T Consensus 199 Lc~WV~A~~~Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~ 270 (344)
T PF12777_consen 199 LCKWVRAMVKYYEVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEE 270 (344)
T ss_dssp HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577887777788887777778888888888888877777777777777777777777777666555444443
No 251
>PRK00736 hypothetical protein; Provisional
Probab=52.71 E-value=1e+02 Score=24.57 Aligned_cols=50 Identities=26% Similarity=0.377 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 473 EEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLE 529 (724)
Q Consensus 473 ~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le 529 (724)
..+|.+|+..+.....++. .||..+..-.+.|..|.+.+..+...+...+
T Consensus 4 e~Ri~~LE~klafqe~tie-------~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIE-------ELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456666666655444433 3344444555556666666666655555443
No 252
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=52.59 E-value=1e+02 Score=24.40 Aligned_cols=64 Identities=33% Similarity=0.492 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 507 EERRIKSLERENDRLRSEISLLESKLGHGDFSSENTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQAV 578 (724)
Q Consensus 507 l~~~i~~Le~e~~~l~~e~~~Le~~l~~~~~~~~~~ril~l~~n~~~~~~~~~~l~~l~~E~~~L~~~l~~l 578 (724)
+..++..|+.++..+...+..+...|....|.. .-+|.+....+..+..+..+++.|...+..|
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~--------kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVE--------KAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHH--------HS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccc--------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345677788888888888888888887533310 1122333334678888888888888777654
No 253
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=52.53 E-value=87 Score=25.05 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 467 SSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLE 515 (724)
Q Consensus 467 ~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le 515 (724)
.-+.+++.++.-.+..+..++..+-..+.++..+...+..+..++..+.
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555555555555555555555555555555555555555443
No 254
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.50 E-value=1.2e+02 Score=24.16 Aligned_cols=62 Identities=18% Similarity=0.280 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 465 LESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEIS 526 (724)
Q Consensus 465 le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~ 526 (724)
|+..+...=..|.-|+=++.+++..+..+..+.+.+......+.++...|..+.......+.
T Consensus 9 LE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlr 70 (79)
T COG3074 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLR 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555555555555444433333333333434333333333333
No 255
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=51.94 E-value=4.8e+02 Score=31.04 Aligned_cols=18 Identities=33% Similarity=0.599 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004893 67 DFLDALTNVEKQVRDYQS 84 (724)
Q Consensus 67 ~~~~~l~~~e~qi~~le~ 84 (724)
+|..-+.+++.+|.++..
T Consensus 98 dfEkpi~ele~ki~el~~ 115 (762)
T PLN03229 98 DFEKPLVDLEKKIVDVRK 115 (762)
T ss_pred chhhHHHHHHHHHHHHHh
Confidence 555555555555555443
No 256
>PRK00295 hypothetical protein; Provisional
Probab=51.84 E-value=1.2e+02 Score=24.19 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 004893 467 SSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSL 514 (724)
Q Consensus 467 ~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~L 514 (724)
.-+.+++.++.-.+..+..++..+.+.+.++..+..++..+..++..+
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666666666666666666666666666666665555554
No 257
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=51.22 E-value=2.5e+02 Score=27.65 Aligned_cols=61 Identities=16% Similarity=0.143 Sum_probs=34.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHH
Q 004893 65 KSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQ 125 (724)
Q Consensus 65 ~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~ 125 (724)
|+=++.++.+...++...-.++-.++.++.............+..+...+....-++.+..
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce 72 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCE 72 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhH
Confidence 5556666666666666666666666666666665555555555555544444333333333
No 258
>PLN03188 kinesin-12 family protein; Provisional
Probab=50.76 E-value=6.3e+02 Score=32.05 Aligned_cols=56 Identities=13% Similarity=0.135 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 283 IRNYEAEVREARKLKASY-ENTELLKEKLLEEKSRRERVEQELAKLREVQQSMDQLE 338 (724)
Q Consensus 283 l~~le~~~~El~~Lr~~~-~~~ellkee~~~lq~kl~~~E~~~~~~~~le~~~~~Le 338 (724)
.+....+.+|+..||... ....+|++++..|+.+|...-+......+|=+.+...+
T Consensus 1154 ~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eae 1210 (1320)
T PLN03188 1154 SKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAE 1210 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 444555678888888554 56679999999999888776666656666655554443
No 259
>PF13166 AAA_13: AAA domain
Probab=50.56 E-value=5.1e+02 Score=30.92 Aligned_cols=20 Identities=20% Similarity=0.517 Sum_probs=11.9
Q ss_pred ccchHHhhH-hhHhHHHHHHHH
Q 004893 54 LLCTYQCRQ-MVKSDFLDALTN 74 (724)
Q Consensus 54 ~~~~~~~~~-~~~~~~~~~l~~ 74 (724)
-.|.| |-| ..=.++...+..
T Consensus 256 ~~Cpf-C~q~~l~~~~~~~l~~ 276 (712)
T PF13166_consen 256 DTCPF-CQQEPLSEERKERLEK 276 (712)
T ss_pred CcCCC-CCCcCCcHHHHHHHHH
Confidence 67886 556 355555555544
No 260
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=49.52 E-value=1.3e+02 Score=26.59 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=32.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 63 MVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELA 115 (724)
Q Consensus 63 ~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~ 115 (724)
|.+.++-+.+..++.++..+-.++..++..+..+-.+...|+-+...|...+.
T Consensus 1 Mdk~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 1 MDKKEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777777777777666666555555544444444333
No 261
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=49.12 E-value=1.3e+02 Score=23.81 Aligned_cols=54 Identities=17% Similarity=0.224 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004893 479 LESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKL 532 (724)
Q Consensus 479 Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l 532 (724)
|+..++.+-....+++.+...+..+...+..+-..|...++..+..+..+...+
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RL 58 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRL 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333333334334333333334444444444444444444444444433
No 262
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=49.11 E-value=1.7e+02 Score=25.69 Aligned_cols=52 Identities=21% Similarity=0.364 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHchHHHHHHHH
Q 004893 77 KQVRDYQSKLEELNENFSKAEAERKKF--RDQFLYAEQELAAAKGREGVLQEQL 128 (724)
Q Consensus 77 ~qi~~le~~l~~l~~~l~~~e~~~~~l--q~~l~~le~el~~~~~~~~~l~er~ 128 (724)
..+..+...+......+..++..+..+ .+.+..+.-.+..+.|+...+..++
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344445555555666666666666777 7777777777777777777776666
No 263
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=48.50 E-value=1.6e+02 Score=27.90 Aligned_cols=60 Identities=25% Similarity=0.288 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 004893 468 SLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKL--NNEERRIKSLERENDRLRSEISL 527 (724)
Q Consensus 468 ~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l--~~l~~~i~~Le~e~~~l~~e~~~ 527 (724)
++..+...|..|+..+.++..++.....++..|...| .+++.++..|..+....+..+..
T Consensus 80 el~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~ 141 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKN 141 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777777777777777666544 24555555555555444444433
No 264
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=48.22 E-value=1.9e+02 Score=25.21 Aligned_cols=65 Identities=20% Similarity=0.284 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004893 469 LAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLG 533 (724)
Q Consensus 469 l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~ 533 (724)
-.+++.++.-|..-+-.....+..+..++......|..+..+++.|.=.+..|...+..|..++.
T Consensus 7 YsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 7 YSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555443333344555555555556666666777777777777777777766665
No 265
>PRK11519 tyrosine kinase; Provisional
Probab=48.09 E-value=5.6e+02 Score=30.73 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 229 KESEMLKNQMKDLKEQLNECLNQKSEVE 256 (724)
Q Consensus 229 ~e~~~L~~el~el~~~l~e~~~~~~~Le 256 (724)
.-..-++.++..++.+++..+..+....
T Consensus 267 ~a~~fL~~ql~~l~~~L~~aE~~l~~fr 294 (719)
T PRK11519 267 KSLAFLAQQLPEVRSRLDVAENKLNAFR 294 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443333
No 266
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=46.73 E-value=2.2e+02 Score=32.21 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=38.6
Q ss_pred chHHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHH
Q 004893 56 CTYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREG 122 (724)
Q Consensus 56 ~~~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~ 122 (724)
|.=-|...-+.+...-++....++.+++.+.+++..++.++...++.++..+...+.++.++++.+.
T Consensus 72 ~~~~s~~r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ie 138 (907)
T KOG2264|consen 72 CSGYSIGRILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIE 138 (907)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHH
Confidence 4433444445555555555556666666666666666666666666666666655555555555543
No 267
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=46.03 E-value=2.7e+02 Score=26.48 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 004893 557 AKQTIEALQTELQKTKEKLQAVEEL 581 (724)
Q Consensus 557 ~~~~l~~l~~E~~~L~~~l~~l~~~ 581 (724)
.+..+..|+.|+...+.++.++..+
T Consensus 121 mQe~i~~L~kev~~~~erl~~~k~g 145 (201)
T KOG4603|consen 121 MQEEIQELKKEVAGYRERLKNIKAG 145 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888999999888888877643
No 268
>PRK02793 phi X174 lysis protein; Provisional
Probab=45.47 E-value=1.6e+02 Score=23.78 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHH
Q 004893 83 QSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQL 128 (724)
Q Consensus 83 e~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~ 128 (724)
+..+..|...+.-.+..++.|++.+..-...+..+..++..+.+++
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 52 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444555444444444444444444444433
No 269
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=45.29 E-value=1.5e+02 Score=23.24 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 004893 400 QSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNE 443 (724)
Q Consensus 400 ~~le~e~~~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~ 443 (724)
+.+..++..++...-.....+...+.+...+..++..++..++.
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433333334444444444455555555555554443
No 270
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=44.64 E-value=2.4e+02 Score=25.57 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 004893 162 KAESAAASAEEKASLLEGKLTHLSDSIEREKKRL 195 (724)
Q Consensus 162 ~~e~~~~~l~~~l~~l~~el~e~~~~~e~e~~~L 195 (724)
.+...+....++++.+...+......+...+..+
T Consensus 40 ~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~v 73 (126)
T PF07889_consen 40 SMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRV 73 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555544444433333
No 271
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=44.54 E-value=6.4e+02 Score=30.38 Aligned_cols=10 Identities=10% Similarity=0.341 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 004893 213 IGADLEKMEC 222 (724)
Q Consensus 213 l~~ele~~~~ 222 (724)
+..+++.++.
T Consensus 321 l~~qi~~l~~ 330 (754)
T TIGR01005 321 AKSSLADLDA 330 (754)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 272
>PF13514 AAA_27: AAA domain
Probab=44.49 E-value=7.7e+02 Score=31.31 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=25.5
Q ss_pred CCCcccchHHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 50 PSDHLLCTYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFS 94 (724)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~ 94 (724)
|+..++-+++.+......+...+.....++.+.+..+..+..++.
T Consensus 340 ~~~~~~~~i~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 384 (1111)
T PF13514_consen 340 PSLAARERIRELLQEREQLEQALAQARRELEEAERELEQLQAELA 384 (1111)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555655566666666666666666665555555555543
No 273
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=44.28 E-value=1.3e+02 Score=25.20 Aligned_cols=56 Identities=32% Similarity=0.442 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 461 LTKELESSLAKKEEFIEELESNLHAQ---QEINSRQRDEIKSLSEKLNNEERRIKSLER 516 (724)
Q Consensus 461 ~~~~le~~l~~~~~~i~~Le~~l~~~---~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~ 516 (724)
.|..++..+..++.+++.++..|... ......+..+...+...+.....++..|.+
T Consensus 6 eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 45566677777777777777776432 122233344444444444444444444433
No 274
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=43.98 E-value=1.9e+02 Score=28.12 Aligned_cols=68 Identities=25% Similarity=0.363 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 464 ELESSLAKKEEFIEELESNLHAQQEINSR-QRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESK 531 (724)
Q Consensus 464 ~le~~l~~~~~~i~~Le~~l~~~~~~~~~-l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~ 531 (724)
.+-..+..++..++.+..+.......... ...+.+....++..++.++...+.+.+.++.+.+.+..+
T Consensus 122 ~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 122 SLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555555555554433222222 223334455666667777777777777777777766654
No 275
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=43.94 E-value=3.8e+02 Score=27.58 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhH
Q 004893 174 ASLLEGKLTHLSDSIEREKKRLNNEVTQLKRE 205 (724)
Q Consensus 174 l~~l~~el~e~~~~~e~e~~~L~~~l~~L~~e 205 (724)
+..+..+|.+..+..+..+..|+.++..+...
T Consensus 65 l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~ak 96 (258)
T PF15397_consen 65 LQQAKAELQEWEEKEESKLSKLQQQLEQLDAK 96 (258)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33334444444333333444444444443333
No 276
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=43.81 E-value=1.6e+02 Score=23.32 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 471 KKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLE 529 (724)
Q Consensus 471 ~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le 529 (724)
.+..+|+.|-.....++..|..++.+...+...-..+..++......++.+-..+..|+
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 34445555555555555555555555555554444555555555555555554444443
No 277
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=43.69 E-value=1.7e+02 Score=25.71 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 505 NNEERRIKSLERENDRLRSEISLLE 529 (724)
Q Consensus 505 ~~l~~~i~~Le~e~~~l~~e~~~Le 529 (724)
..+-.+...|..++..|+..+..++
T Consensus 32 ~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 32 QELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444444433
No 278
>PRK00846 hypothetical protein; Provisional
Probab=43.31 E-value=1.9e+02 Score=23.84 Aligned_cols=52 Identities=21% Similarity=0.166 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 471 KKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLE 529 (724)
Q Consensus 471 ~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le 529 (724)
.+..+|.+|+..+.....++. .||..+....+.|..|...+..+...+..++
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe-------~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALT-------ELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455677777777765554444 3444455556666666666666666666555
No 279
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=43.10 E-value=1.8e+02 Score=23.50 Aligned_cols=50 Identities=14% Similarity=0.243 Sum_probs=22.4
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 202 LKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQ 251 (724)
Q Consensus 202 L~~e~~~~~~~l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~ 251 (724)
|+..+..-+..+......++........+...|..++..|..++......
T Consensus 15 Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~q 64 (70)
T PF04899_consen 15 LQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQ 64 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433334444444444444444444445555555555544444433
No 280
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=43.01 E-value=4.9e+02 Score=28.62 Aligned_cols=27 Identities=15% Similarity=0.243 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 67 DFLDALTNVEKQVRDYQSKLEELNENF 93 (724)
Q Consensus 67 ~~~~~l~~~e~qi~~le~~l~~l~~~l 93 (724)
.....+.....++.++......+...+
T Consensus 209 ~~~~~l~~~~~el~eik~~~~~L~~~~ 235 (395)
T PF10267_consen 209 QQNLGLQKILEELREIKESQSRLEESI 235 (395)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344443334444333333333333
No 281
>PRK09343 prefoldin subunit beta; Provisional
Probab=42.88 E-value=2.5e+02 Score=25.20 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004893 597 SGKITQLKEQIATLEKREERYKTVFADRISVFRRACCELF 636 (724)
Q Consensus 597 ~~~~~~l~~~~~~~~k~~~rlke~f~~k~~efr~a~~~l~ 636 (724)
..++.-+...|..++++..+|.+-|.+.-..||+++....
T Consensus 77 ~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~ 116 (121)
T PRK09343 77 KERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYY 116 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445556677888888888888888888888888887643
No 282
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=42.28 E-value=2.6e+02 Score=25.13 Aligned_cols=31 Identities=26% Similarity=0.502 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 215 ADLEKMECRAQNAEKESEMLKNQMKDLKEQL 245 (724)
Q Consensus 215 ~ele~~~~~~~~~E~e~~~L~~el~el~~~l 245 (724)
...+.+..++..+++.-..++.++++++..+
T Consensus 77 er~E~Le~ri~tLekQe~~l~e~l~eLq~~i 107 (119)
T COG1382 77 ERKETLELRIKTLEKQEEKLQERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443
No 283
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=42.05 E-value=78 Score=38.44 Aligned_cols=97 Identities=18% Similarity=0.229 Sum_probs=62.9
Q ss_pred hhhhccccccch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccc-cchhhHHHHHHHHHHHHHHHHHHHHHH
Q 004893 543 KVLRMVNTLAVD-NEAKQTIEALQTELQKTKEKLQAVEELKSQSGDTGKLVD-SYISGKITQLKEQIATLEKREERYKTV 620 (724)
Q Consensus 543 ril~l~~n~~~~-~~~~~~l~~l~~E~~~L~~~l~~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~k~~~rlke~ 620 (724)
|-.++++|+.+. +..-+-|..|++|+.+|+..+..-+ .+.. ....-|. .....++..+.++++.-+|.+..|-+.
T Consensus 344 RAK~Iv~~avVNEdpnaKLIRELreEv~rLksll~~~~--~~~~-~~~~~p~~~~~~~~~e~~~~~L~E~Ek~mael~et 420 (1221)
T KOG0245|consen 344 RAKQIVNNAVVNEDPNAKLIRELREEVARLKSLLRAQG--LGDI-AVEGSPSALLSQPEIEELRERLQETEKIMAELNET 420 (1221)
T ss_pred HhhhhhccceeCCCccHHHHHHHHHHHHHHHHHHhccc--cccc-cccCCcccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 344456665542 1234668899999999997776311 1110 1111122 134668899999999999999999999
Q ss_pred HHHHHHHH------HHHHHHHhcceEEe
Q 004893 621 FADRISVF------RRACCELFGYKIVM 642 (724)
Q Consensus 621 f~~k~~ef------r~a~~~l~Gy~i~~ 642 (724)
|..|..+- |++.-.=.|..+.+
T Consensus 421 W~EKl~~aEair~e~~~~L~emGva~~~ 448 (1221)
T KOG0245|consen 421 WEEKLREAEAIRMEREALLAEMGVAVRE 448 (1221)
T ss_pred HHHHHHHHHHHHHhHHHHHHhcCceeee
Confidence 99987653 44554455777765
No 284
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=42.02 E-value=4.8e+02 Score=28.19 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 75 VEKQVRDYQSKLEELNENFSKAEAE 99 (724)
Q Consensus 75 ~e~qi~~le~~l~~l~~~l~~~e~~ 99 (724)
+++.|..++++++.++.+....+..
T Consensus 296 L~k~vQ~L~AQle~~R~q~e~~q~~ 320 (593)
T KOG4807|consen 296 LEKEVQALRAQLEAWRLQGEAPQSA 320 (593)
T ss_pred HHHHHHHHHHHHHHHHHhccCchhh
Confidence 3445555555555555555333333
No 285
>PRK04325 hypothetical protein; Provisional
Probab=41.87 E-value=1.8e+02 Score=23.68 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHH
Q 004893 83 QSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQL 128 (724)
Q Consensus 83 e~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~ 128 (724)
+..+..|...+.-.+..++.|++.+..-...+..+..++..+.+++
T Consensus 8 e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 8 EDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444455555555555555555554444444444433
No 286
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=41.84 E-value=1.3e+02 Score=29.89 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHH
Q 004893 92 NFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQ 125 (724)
Q Consensus 92 ~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~ 125 (724)
+.+...++...+.+++.....+++....+..++.
T Consensus 152 ~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~ 185 (216)
T KOG1962|consen 152 ENDKLKADLEKLETELEKKQKKLEKAQKKVDALK 185 (216)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444433333
No 287
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=41.64 E-value=5.2e+02 Score=28.50 Aligned_cols=25 Identities=12% Similarity=0.089 Sum_probs=14.0
Q ss_pred eeeccCCCC-CCCCCCCCCCCcccch
Q 004893 33 LVIYEDPSP-AGRESSHQPSDHLLCT 57 (724)
Q Consensus 33 ~~~~~~~~~-~~~~~~~~~~~~~~~~ 57 (724)
.+.|..|+- ++-+.|.-..|+..|.
T Consensus 78 ~~~~~~~p~r~~~~~~~~~~~~~~~~ 103 (447)
T KOG2751|consen 78 VVVYFSPPVRDSDTEHNLSFELGENG 103 (447)
T ss_pred ceecccCccccccccccccccccccc
Confidence 566666662 4445555566666554
No 288
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=41.15 E-value=4e+02 Score=27.09 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004893 227 AEKESEMLKNQMKDLKEQLNE 247 (724)
Q Consensus 227 ~E~e~~~L~~el~el~~~l~e 247 (724)
++.+...-+..+.++...+++
T Consensus 166 i~~Ek~~Re~~~~~l~~~le~ 186 (247)
T PF06705_consen 166 IEKEKNTRESKLSELRSELEE 186 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 289
>PF15294 Leu_zip: Leucine zipper
Probab=40.95 E-value=4.4e+02 Score=27.43 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhhhHhHHH
Q 004893 190 REKKRLNNEVTQLKRESKSS 209 (724)
Q Consensus 190 ~e~~~L~~~l~~L~~e~~~~ 209 (724)
..+..|+..+..++.++...
T Consensus 190 q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 190 QDLSDLENKMAALKSELEKA 209 (278)
T ss_pred cchhhHHHHHHHHHHHHHHH
Confidence 34455566666665544433
No 290
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=40.69 E-value=2.4e+02 Score=24.30 Aligned_cols=84 Identities=19% Similarity=0.302 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhccccccchH-HHHHHHHHHHHHHHH
Q 004893 492 RQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLGHGDFSSENTKVLRMVNTLAVDN-EAKQTIEALQTELQK 570 (724)
Q Consensus 492 ~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~~~~~~~~~~ril~l~~n~~~~~-~~~~~l~~l~~E~~~ 570 (724)
.++..++-..+...-+++++.+++.+++.+..+++.+....+. .+. .-.+.--..|..+. ..+..|...+.++..
T Consensus 5 eLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~--~d~--~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~ 80 (96)
T PF11365_consen 5 ELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGD--LDS--LAKLSEGGSPSGREAELQEELKLAREQINE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--Ccc--cccCCCCCCCccccHHHHHHHHHHHHHHHH
Confidence 3444555555666678899999999999999999988877642 221 00111112233322 236677788888888
Q ss_pred HHHHHHHHH
Q 004893 571 TKEKLQAVE 579 (724)
Q Consensus 571 L~~~l~~l~ 579 (724)
|..++..++
T Consensus 81 Ls~kv~eLq 89 (96)
T PF11365_consen 81 LSGKVMELQ 89 (96)
T ss_pred HhhHHHHHh
Confidence 887777655
No 291
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=40.46 E-value=5e+02 Score=28.00 Aligned_cols=27 Identities=15% Similarity=0.372 Sum_probs=16.7
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHH
Q 004893 549 NTLAVDNEAKQTIEALQTELQKTKEKLQ 576 (724)
Q Consensus 549 ~n~~~~~~~~~~l~~l~~E~~~L~~~l~ 576 (724)
++|.+.. .+.++..|++.+.....++.
T Consensus 240 ~~P~v~~-l~~~i~~l~~~i~~e~~~i~ 266 (362)
T TIGR01010 240 QNPQVPS-LQARIKSLRKQIDEQRNQLS 266 (362)
T ss_pred CCCchHH-HHHHHHHHHHHHHHHHHHhh
Confidence 3788755 45667777776666554443
No 292
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=40.12 E-value=1.2e+02 Score=33.95 Aligned_cols=72 Identities=14% Similarity=0.060 Sum_probs=34.9
Q ss_pred CCCCCCCCcccchHHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHch
Q 004893 45 ESSHQPSDHLLCTYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGR 120 (724)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~ 120 (724)
..+..|+..|+-+-=.-. .-...+.+.+....+++.+++.++.++..+......++.+|..++.++..++.+
T Consensus 48 ~~~~~~~~~vV~~~Fddk----VnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 48 QEPVPDMTGVVDTTFDDK----VRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred cCCCCCccceecchhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 344456666655422111 222333444445555666666665555444455555555555554444444433
No 293
>PRK00736 hypothetical protein; Provisional
Probab=39.92 E-value=1.7e+02 Score=23.34 Aligned_cols=43 Identities=19% Similarity=0.259 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHH
Q 004893 86 LEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQL 128 (724)
Q Consensus 86 l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~ 128 (724)
+..|...+.-.+..++.|++.+..-...+..+..++..+.+++
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455555555555555555555444444444443
No 294
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=39.86 E-value=1.5e+02 Score=22.62 Aligned_cols=16 Identities=6% Similarity=0.227 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 004893 78 QVRDYQSKLEELNENF 93 (724)
Q Consensus 78 qi~~le~~l~~l~~~l 93 (724)
++..++..+..++.++
T Consensus 8 ~~~~~~~~i~tvk~en 23 (55)
T PF05377_consen 8 ELPRIESSINTVKKEN 23 (55)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 295
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=39.78 E-value=3.7e+02 Score=26.29 Aligned_cols=9 Identities=11% Similarity=0.272 Sum_probs=4.6
Q ss_pred CCCCCCCCc
Q 004893 45 ESSHQPSDH 53 (724)
Q Consensus 45 ~~~~~~~~~ 53 (724)
-||-+|.-.
T Consensus 27 ~PHF~pL~~ 35 (190)
T PF05266_consen 27 SPHFSPLQE 35 (190)
T ss_pred CCCChhhhc
Confidence 455555444
No 296
>PRK00846 hypothetical protein; Provisional
Probab=39.77 E-value=2.1e+02 Score=23.51 Aligned_cols=47 Identities=21% Similarity=0.157 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHH
Q 004893 82 YQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQL 128 (724)
Q Consensus 82 le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~ 128 (724)
++..+..|...+.-.+..++.|++.+......+..+..++..+.+++
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL 57 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 57 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555666555555555555555555555544
No 297
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=39.77 E-value=3.9e+02 Score=26.53 Aligned_cols=46 Identities=20% Similarity=0.362 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHch
Q 004893 75 VEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGR 120 (724)
Q Consensus 75 ~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~ 120 (724)
++..|.+++..+...+..+..+-.....+..++..+...+..+..+
T Consensus 28 l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~ 73 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQ 73 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555555544444
No 298
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=39.69 E-value=3.8e+02 Score=26.42 Aligned_cols=60 Identities=12% Similarity=0.221 Sum_probs=38.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHH
Q 004893 63 MVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREG 122 (724)
Q Consensus 63 ~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~ 122 (724)
-+..|...+++....+|-.+...+...+..+...+.....++..+....-+++.+.+++.
T Consensus 17 qQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELq 76 (202)
T PF06818_consen 17 QQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQ 76 (202)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHH
Confidence 344555566666666677777777777777777777777777766666666665555543
No 299
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=39.34 E-value=1.1e+02 Score=24.23 Aligned_cols=59 Identities=27% Similarity=0.404 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCccccccchh---hHHHHHHHHHHHHHHHHHHHH
Q 004893 560 TIEALQTELQKTKEKLQAVEELKSQSGDTGKLVDSYIS---GKITQLKEQIATLEKREERYK 618 (724)
Q Consensus 560 ~l~~l~~E~~~L~~~l~~l~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~k~~~rlk 618 (724)
++..|..+++.+...+..+....+..+-....|..++. ..+.++..++..+...+..|+
T Consensus 5 E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 5 EIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44555555555555554444322211112234665543 346667777777776666553
No 300
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=39.26 E-value=1.8e+02 Score=22.38 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 464 ELESSLAKKEEFIEELESNLHAQQ 487 (724)
Q Consensus 464 ~le~~l~~~~~~i~~Le~~l~~~~ 487 (724)
.|..++..+..+++.|...+..+.
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~lr 30 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNALR 30 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433
No 301
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=39.08 E-value=4.5e+02 Score=27.05 Aligned_cols=8 Identities=25% Similarity=0.360 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 004893 194 RLNNEVTQ 201 (724)
Q Consensus 194 ~L~~~l~~ 201 (724)
.|.+.+.+
T Consensus 124 ~L~rqlq~ 131 (258)
T PF15397_consen 124 NLVRQLQQ 131 (258)
T ss_pred HHHHHHHH
Confidence 33333333
No 302
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=38.54 E-value=4.7e+02 Score=27.08 Aligned_cols=65 Identities=15% Similarity=0.372 Sum_probs=45.7
Q ss_pred CCCcccchHHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHH
Q 004893 50 PSDHLLCTYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGV 123 (724)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~ 123 (724)
+.++.+-..+..+.-+.-|+..+.+.+..+++-+.++.+|+.++. .+++.+ ++.+..+.+.++.+
T Consensus 55 ~PEQYLTPLQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~-------RMrEDW--IEEECHRVEAQLAL 119 (305)
T PF15290_consen 55 NPEQYLTPLQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLA-------RMREDW--IEEECHRVEAQLAL 119 (305)
T ss_pred CHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-------HHHHHH--HHHHHHHHHHHHHH
Confidence 445566668888888889999999888888888888888888774 333333 34555555555443
No 303
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=38.42 E-value=5.7e+02 Score=27.99 Aligned_cols=28 Identities=11% Similarity=0.238 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 004893 416 SKSEVKRIESMLSVVTEERDKLRNVVNE 443 (724)
Q Consensus 416 ~~~~~~rLek~~~~~~~er~~lr~~l~~ 443 (724)
....+++|=+++..++.+.+.|...+|.
T Consensus 199 qEalvN~LwKrmdkLe~ekr~Lq~KlDq 226 (552)
T KOG2129|consen 199 QEALVNSLWKRMDKLEQEKRYLQKKLDQ 226 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4456677777788888888888877754
No 304
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=38.38 E-value=1.6e+02 Score=29.41 Aligned_cols=6 Identities=67% Similarity=1.464 Sum_probs=2.2
Q ss_pred CCCCCC
Q 004893 7 PPKRPR 12 (724)
Q Consensus 7 ~~~~~~ 12 (724)
|||++|
T Consensus 24 p~r~~~ 29 (216)
T KOG1962|consen 24 PPRRRR 29 (216)
T ss_pred CHHHHH
Confidence 333333
No 305
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=38.07 E-value=4.4e+02 Score=29.56 Aligned_cols=9 Identities=11% Similarity=0.047 Sum_probs=3.9
Q ss_pred CCCCCCCCc
Q 004893 45 ESSHQPSDH 53 (724)
Q Consensus 45 ~~~~~~~~~ 53 (724)
...|..-|-
T Consensus 48 kalGiegDT 56 (472)
T TIGR03752 48 KALGIEGDT 56 (472)
T ss_pred HhcCCCCCC
Confidence 344444444
No 306
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=38.04 E-value=5.9e+02 Score=28.06 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=12.6
Q ss_pred cCCCCCCCCCcceeeccCCCC
Q 004893 21 ECPPTAGGSDRRLVIYEDPSP 41 (724)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~ 41 (724)
++|-..+..|-.+|+-.||.+
T Consensus 402 e~~~~~~edd~nfV~e~d~~~ 422 (583)
T KOG3809|consen 402 EAPKVETEDDSNFVMENDEED 422 (583)
T ss_pred cCCCCccccccceeeeccccc
Confidence 344445555566777777664
No 307
>PF13166 AAA_13: AAA domain
Probab=38.02 E-value=7.6e+02 Score=29.39 Aligned_cols=11 Identities=9% Similarity=0.341 Sum_probs=6.1
Q ss_pred hhhHHHHHHHh
Q 004893 690 PEISRQVDIFV 700 (724)
Q Consensus 690 ~~~~~~~~~~~ 700 (724)
..+++.++.|.
T Consensus 638 N~~RriLE~yf 648 (712)
T PF13166_consen 638 NVMRRILEAYF 648 (712)
T ss_pred HHhHHHHHHHH
Confidence 44555666663
No 308
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=37.92 E-value=2e+02 Score=33.32 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=18.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 550 TLAVDNEAKQTIEALQTELQKTKEKLQAVE 579 (724)
Q Consensus 550 n~~~~~~~~~~l~~l~~E~~~L~~~l~~l~ 579 (724)
||......+.+++.|+.+.+..+..+..+.
T Consensus 210 ~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~ 239 (555)
T TIGR03545 210 NPLELQKIKEEFDKLKKEGKADKQKIKSAK 239 (555)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333346778888888877776666543
No 309
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=37.91 E-value=3.7e+02 Score=25.73 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=9.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 004893 65 KSDFLDALTNVEKQVRDYQSKL 86 (724)
Q Consensus 65 ~~~~~~~l~~~e~qi~~le~~l 86 (724)
++++.-....+..++..++..+
T Consensus 8 i~~~Rl~~~~lk~~l~k~~~ql 29 (177)
T PF13870_consen 8 ISKLRLKNITLKHQLAKLEEQL 29 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 310
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=37.90 E-value=1.8e+02 Score=25.31 Aligned_cols=15 Identities=40% Similarity=0.614 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 004893 78 QVRDYQSKLEELNEN 92 (724)
Q Consensus 78 qi~~le~~l~~l~~~ 92 (724)
+...+..+++.++.+
T Consensus 37 ~~r~l~~~~e~lr~~ 51 (108)
T PF02403_consen 37 ERRELQQELEELRAE 51 (108)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 311
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=37.83 E-value=6.3e+02 Score=28.34 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhh
Q 004893 325 AKLREVQQSMDQLEDELSSWKFLIR 349 (724)
Q Consensus 325 ~~~~~le~~~~~Le~el~~w~~~~~ 349 (724)
..+..++.++..++.+.........
T Consensus 97 ~~~~~~~~~~~~~~~~~~rL~a~~~ 121 (457)
T TIGR01000 97 NQKQLLEQQLDNLKDQKKSLDTLKQ 121 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777776666554
No 312
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=37.36 E-value=5.2e+02 Score=27.28 Aligned_cols=70 Identities=16% Similarity=0.258 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 004893 365 AALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNE 443 (724)
Q Consensus 365 ~~Lq~e~~~l~~~~~~~~~~~~~le~~~~~~e~ek~~le~e~~~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~ 443 (724)
.+.+.+-..+.+.++.+..++..|-.. .+...+..+...+..++..+..+++++..+......+...+..
T Consensus 44 EQAr~~A~~fA~~ld~~~~kl~~Ms~~---------ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~ 113 (301)
T PF06120_consen 44 EQARQEAIEFADSLDELKEKLKEMSST---------QLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAE 113 (301)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556666666666666666655332 2334455555666666666666666666666555555444433
No 313
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=37.20 E-value=31 Score=37.65 Aligned_cols=16 Identities=50% Similarity=0.945 Sum_probs=10.4
Q ss_pred cCCCCCCCCCCcCCCC
Q 004893 3 LRTPPPKRPRDAAGEP 18 (724)
Q Consensus 3 ~~~~~~~~~~~~~~~~ 18 (724)
+|.|||+|||...+||
T Consensus 285 ~~SPPP~~Rk~~g~SP 300 (458)
T PF10446_consen 285 LRSPPPKRRKLRGRSP 300 (458)
T ss_pred ccCCCchhhhccCCCC
Confidence 5788886666555444
No 314
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=36.95 E-value=6e+02 Score=27.85 Aligned_cols=18 Identities=6% Similarity=-0.116 Sum_probs=9.2
Q ss_pred HHhhHhhHhHHHHHHHHH
Q 004893 58 YQCRQMVKSDFLDALTNV 75 (724)
Q Consensus 58 ~~~~~~~~~~~~~~l~~~ 75 (724)
..++...+..+...+.-+
T Consensus 241 ~~~l~~~l~~L~~~lslL 258 (388)
T PF04912_consen 241 SSPLLPALNELERQLSLL 258 (388)
T ss_pred cchHHHHHHHHHHHHHhc
Confidence 555555555555554444
No 315
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=36.77 E-value=6.2e+02 Score=27.95 Aligned_cols=31 Identities=6% Similarity=0.243 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhccC
Q 004893 416 SKSEVKRIESMLSVVTEERDKLRNVVNEFKK 446 (724)
Q Consensus 416 ~~~~~~rLek~~~~~~~er~~lr~~l~~~~~ 446 (724)
....+.++.+....++.+++.+++.++.++.
T Consensus 141 ~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~ 171 (447)
T KOG2751|consen 141 MDVLLNKLDKEVEDAEDEVDTYKACLQRLEQ 171 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456777778888888888888888877643
No 316
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=36.74 E-value=6.1e+02 Score=27.91 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 226 NAEKESEMLKNQMKDLKEQLNECLNQK 252 (724)
Q Consensus 226 ~~E~e~~~L~~el~el~~~l~e~~~~~ 252 (724)
++..+...+.+.|+.++-++-.-++..
T Consensus 329 klaee~qr~sd~LE~lrlql~~eq~l~ 355 (502)
T KOG0982|consen 329 KLAEEDQRSSDLLEALRLQLICEQKLR 355 (502)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433333
No 317
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=36.46 E-value=3e+02 Score=24.17 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 599 KITQLKEQIATLEKREERYKTVFADRISVFRRAC 632 (724)
Q Consensus 599 ~~~~l~~~~~~~~k~~~rlke~f~~k~~efr~a~ 632 (724)
.+..+...+..+++....|..-|...-..|++++
T Consensus 75 r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 75 KKETLELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555666666666666666666666554
No 318
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=36.41 E-value=3.2e+02 Score=30.60 Aligned_cols=73 Identities=19% Similarity=0.295 Sum_probs=44.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 460 TLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKL--------NNEERRIKSLERENDRLRSEISLLESK 531 (724)
Q Consensus 460 ~~~~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l--------~~l~~~i~~Le~e~~~l~~e~~~Le~~ 531 (724)
..++-|-..+.+++.++..|..+-..+...+++|+.....+..++ .++..+...|..+...+...+..|..+
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~ 138 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRR 138 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666667777777777777776666666655433333222 244556666666666676677777666
Q ss_pred h
Q 004893 532 L 532 (724)
Q Consensus 532 l 532 (724)
+
T Consensus 139 l 139 (472)
T TIGR03752 139 L 139 (472)
T ss_pred H
Confidence 5
No 319
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=35.84 E-value=3.2e+02 Score=27.39 Aligned_cols=58 Identities=26% Similarity=0.282 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 471 KKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLL 528 (724)
Q Consensus 471 ~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~L 528 (724)
..+.++++++.++..+.+.+..++.+.+.|...-..+--+..+|..+++.++.++..+
T Consensus 87 rKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~ 144 (292)
T KOG4005|consen 87 RKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAEL 144 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 3455556666666555555555555544444333333344444444444444444333
No 320
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=35.68 E-value=2.6e+02 Score=26.45 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHchHHHHHH
Q 004893 97 EAERKKFRDQFLYAEQELAAAKGREGVLQE 126 (724)
Q Consensus 97 e~~~~~lq~~l~~le~el~~~~~~~~~l~e 126 (724)
..+...++.++..|+.++..+..+....++
T Consensus 110 ~~e~~~l~~~~e~Le~e~~~L~~~~~~~~e 139 (161)
T TIGR02894 110 KNQNESLQKRNEELEKELEKLRQRLSTIEE 139 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444433333333
No 321
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=35.00 E-value=6.5e+02 Score=27.72 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHch
Q 004893 98 AERKKFRDQFLYAEQELAAAKGR 120 (724)
Q Consensus 98 ~~~~~lq~~l~~le~el~~~~~~ 120 (724)
..+..+.+.+..+..++....+.
T Consensus 145 e~~~q~da~~qq~~~ele~~d~~ 167 (446)
T KOG4438|consen 145 ELRKQLDAKYQQALKELERFDED 167 (446)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc
Confidence 34444555555566666665554
No 322
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=34.91 E-value=2.8e+02 Score=24.54 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 505 NNEERRIKSLERENDRLRSEISLL 528 (724)
Q Consensus 505 ~~l~~~i~~Le~e~~~l~~e~~~L 528 (724)
..+-.+...|.-+++.|+..+..+
T Consensus 32 ~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 32 AELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444444444433
No 323
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=34.36 E-value=2.1e+02 Score=21.93 Aligned_cols=35 Identities=17% Similarity=0.331 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 79 VRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQE 113 (724)
Q Consensus 79 i~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~e 113 (724)
|..+...+..|..++..+..++..++..+.....+
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~E 39 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEE 39 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433333
No 324
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=34.32 E-value=5e+02 Score=26.22 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 161 RKAESAAASAEEKASLLEGKLTHL 184 (724)
Q Consensus 161 ~~~e~~~~~l~~~l~~l~~el~e~ 184 (724)
..+...+.+....+.++...+...
T Consensus 116 ~~aq~~l~~~~~~l~ei~~~L~~~ 139 (240)
T PF12795_consen 116 ERAQQQLSEARQRLQEIRNQLQNL 139 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456666666677777777766653
No 325
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.91 E-value=1.9e+02 Score=21.12 Aligned_cols=34 Identities=12% Similarity=0.291 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 77 KQVRDYQSKLEELNENFSKAEAERKKFRDQFLYA 110 (724)
Q Consensus 77 ~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~l 110 (724)
.....+...++.++.+...+..+...++.++..+
T Consensus 5 ~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 5 RDYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444433
No 326
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=33.72 E-value=1.5e+02 Score=33.91 Aligned_cols=41 Identities=20% Similarity=0.413 Sum_probs=26.1
Q ss_pred HHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 58 YQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEA 98 (724)
Q Consensus 58 ~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~ 98 (724)
.+||+.+++++-+++..++..-..+..++..++.++.....
T Consensus 365 ~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~ 405 (557)
T PF01763_consen 365 NKCLEGQINNQFDTIEDLKEENQDLEKKLRELESELSRYRE 405 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777766666666666666655555544443
No 327
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=33.20 E-value=5.9e+02 Score=26.70 Aligned_cols=111 Identities=21% Similarity=0.300 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Q 004893 462 TKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEE----------RRIKSLERENDRLRSEISLLESK 531 (724)
Q Consensus 462 ~~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~----------~~i~~Le~e~~~l~~e~~~Le~~ 531 (724)
+.++...-.++..+|+-.+.+-.-+....-+.-.++..|...+.+|. -.+...++....+..+...|+.+
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeRE 81 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLERE 81 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hcC-------------CCCCcccchhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 532 LGH-------------GDFSSENTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQAVE 579 (724)
Q Consensus 532 l~~-------------~~~~~~~~ril~l~~n~~~~~~~~~~l~~l~~E~~~L~~~l~~l~ 579 (724)
|.+ .+.++...+|. |.-.| ..+-.-|+.|++.|+.+|+.-+
T Consensus 82 LARaKV~aNRVA~vvANEWKD~nDkvM-----PVKqW--LEERR~lQgEmQ~LrDKLAiaE 135 (351)
T PF07058_consen 82 LARAKVSANRVATVVANEWKDENDKVM-----PVKQW--LEERRFLQGEMQQLRDKLAIAE 135 (351)
T ss_pred HHHhhhhhhhhhhhhcccccccCCccc-----cHHHH--HHHHHHHHHHHHHHHHHHHHHH
No 328
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=32.79 E-value=8.3e+02 Score=28.27 Aligned_cols=23 Identities=9% Similarity=0.143 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHh
Q 004893 325 AKLREVQQSMDQLEDELSSWKFL 347 (724)
Q Consensus 325 ~~~~~le~~~~~Le~el~~w~~~ 347 (724)
..+.++...+..+..++..+...
T Consensus 273 ~~l~~~~~~l~d~~~~l~~~~~~ 295 (563)
T TIGR00634 273 EQVGNALTEVEEATRELQNYLDE 295 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344555555555555555443
No 329
>PF10850 DUF2653: Protein of unknown function (DUF2653); InterPro: IPR020516 This entry contains proteins with no known function.
Probab=32.77 E-value=86 Score=26.53 Aligned_cols=82 Identities=10% Similarity=0.231 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhcceEEeccccccCCccceeEEEeecccCCCCCeeEEeec-CCceeeccCCCCChhhhHHHHHHHhhhcC
Q 004893 626 SVFRRACCELFGYKIVMDEHQRANGIPVTHFTLQSIYAQGDDEKLEFEYE-SSNTNIMVNDYTSQPEISRQVDIFVRKMN 704 (724)
Q Consensus 626 ~efr~a~~~l~Gy~i~~~~~~~~~g~~~~~~~l~s~y~~~~~~~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (724)
++...||+..+..+=.. .|. .|-|.=+|.+ +--|..... +|....+.+ ..+-.-+..|+.+..
T Consensus 8 qeIiNAvCl~~A~~~~i----~P~-----dVeVeL~yDd--d~GFsAEv~~ngr~q~l~~-----~nlieAIr~~l~~~~ 71 (91)
T PF10850_consen 8 QEIINAVCLHIAERKGI----QPE-----DVEVELMYDD--DYGFSAEVWVNGRSQYLIE-----ANLIEAIRQYLEEEY 71 (91)
T ss_pred HHHHHHHHHHHHHhcCC----Ccc-----cEEEEEEEec--CCCeeEEEEECCeEEEEch-----hhHHHHHHHHHHHHh
Confidence 45677888887776655 444 4777778842 223444443 666666532 457888999999999
Q ss_pred CcchhhhhhhhhhhhccCC
Q 004893 705 SIPAFTANLTVESFNRRTL 723 (724)
Q Consensus 705 ~ip~fla~ltl~l~~~~t~ 723 (724)
.+-.|-+.+.|+|=+...|
T Consensus 72 ~~~p~~~~i~L~lddeeGi 90 (91)
T PF10850_consen 72 NMDPFRAGIELELDDEEGI 90 (91)
T ss_pred CCCcchhheEEEEccccCc
Confidence 9999999999998766554
No 330
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=32.74 E-value=3.7e+02 Score=24.15 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004893 600 ITQLKEQIATLEKREERYKTVFADRISVFRRACCELFG 637 (724)
Q Consensus 600 ~~~l~~~~~~~~k~~~rlke~f~~k~~efr~a~~~l~G 637 (724)
+..|...|.++++...++.+-| .+.+..++..||
T Consensus 79 ~E~Le~ri~tLekQe~~l~e~l----~eLq~~i~~~l~ 112 (119)
T COG1382 79 KETLELRIKTLEKQEEKLQERL----EELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhh
Confidence 3445555666666666666544 345556666655
No 331
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.66 E-value=5.2e+02 Score=25.86 Aligned_cols=77 Identities=16% Similarity=0.270 Sum_probs=48.4
Q ss_pred HHHHHHHhcceEEeccccccCCccceeEEEeecccCCCCCeeEEeecCC---ceeeccCCCCChhhhHHHHHHHhhhcCC
Q 004893 629 RRACCELFGYKIVMDEHQRANGIPVTHFTLQSIYAQGDDEKLEFEYESS---NTNIMVNDYTSQPEISRQVDIFVRKMNS 705 (724)
Q Consensus 629 r~a~~~l~Gy~i~~~~~~~~~g~~~~~~~l~s~y~~~~~~~l~f~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (724)
-.-....||+.|.- + -| .+-+|.++-+=+..|...|.|.+.=| -..++.-.+.- +-+.+.+. -++..++
T Consensus 151 a~wy~dyLGleie~----~-hg-evikfiFTnIdpkdp~~~FsF~vhL~e~~Dy~Vvd~~P~L-~gl~~a~s-~vr~tnn 222 (246)
T KOG4657|consen 151 ASWYNDYLGLEIEA----G-HG-EVIKFIFTNIDPKDPTREFSFTVHLGEDIDYQVVDHSPQL-QGLTSAIS-AVRPTNN 222 (246)
T ss_pred HHHHHHhcCceeee----c-cC-ceEEEEEeccCCCCCccceeeEEeeccccCccccCcCCCc-ccHHHHHH-Hhhcccc
Confidence 34566789999976 2 12 23479999999999999999988521 23444221110 22444333 4567888
Q ss_pred cchhhhhh
Q 004893 706 IPAFTANL 713 (724)
Q Consensus 706 ip~fla~l 713 (724)
+..||..+
T Consensus 223 Fs~FL~n~ 230 (246)
T KOG4657|consen 223 FSSFLENK 230 (246)
T ss_pred HHHHHHHH
Confidence 88998764
No 332
>PF12178 INCENP_N: Chromosome passenger complex (CPC) protein INCENP N terminal; InterPro: IPR022006 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. INCENP is a regulatory protein in the chromosome passenger complex. It is involved in regulation of the catalytic protein Aurora B. It performs this function in association with two other proteins - Survivin and Borealin. These proteins form a tight three-helical bundle. The N-terminal domain is the domain involved in formation of this three helical bundle. ; PDB: 2QFA_C.
Probab=32.65 E-value=49 Score=23.09 Aligned_cols=20 Identities=10% Similarity=0.097 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004893 614 EERYKTVFADRISVFRRACC 633 (724)
Q Consensus 614 ~~rlke~f~~k~~efr~a~~ 633 (724)
..+|.++|..|+.+|...+.
T Consensus 4 ~~~L~e~~~~Kl~efl~~vd 23 (38)
T PF12178_consen 4 PQHLLEVCDQKLQEFLCNVD 23 (38)
T ss_dssp GGGHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcc
Confidence 36899999999999988765
No 333
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=32.18 E-value=8.2e+02 Score=29.37 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHhHHHH
Q 004893 161 RKAESAAASAEEKASLLEGKLTHLSDSIEREKKRLNNEVTQLKRESKSSI 210 (724)
Q Consensus 161 ~~~e~~~~~l~~~l~~l~~el~e~~~~~e~e~~~L~~~l~~L~~e~~~~~ 210 (724)
..+..++..+..++..+...+...- ..+.+...|+++.+-.+.-+..+.
T Consensus 342 ~~l~~~~~~L~~~~~~l~~~~~~~p-~~e~~~~~L~R~~~~~~~lY~~lL 390 (726)
T PRK09841 342 RALLEKRQTLEQERKRLNKRVSAMP-STQQEVLRLSRDVEAGRAVYLQLL 390 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666655555554442 234455566666655555554443
No 334
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=32.07 E-value=7.7e+02 Score=27.64 Aligned_cols=15 Identities=13% Similarity=0.293 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 004893 74 NVEKQVRDYQSKLEE 88 (724)
Q Consensus 74 ~~e~qi~~le~~l~~ 88 (724)
.++.++..+..++..
T Consensus 101 ~~~~~~~~~~~~~~r 115 (457)
T TIGR01000 101 LLEQQLDNLKDQKKS 115 (457)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 335
>PRK11519 tyrosine kinase; Provisional
Probab=32.02 E-value=9.6e+02 Score=28.76 Aligned_cols=48 Identities=17% Similarity=0.240 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHhHHHH
Q 004893 162 KAESAAASAEEKASLLEGKLTHLSDSIEREKKRLNNEVTQLKRESKSSI 210 (724)
Q Consensus 162 ~~e~~~~~l~~~l~~l~~el~e~~~~~e~e~~~L~~~l~~L~~e~~~~~ 210 (724)
.+......+..++..+..++..+. ..+.++..|+++..-.+.-+..+.
T Consensus 343 ~l~~~~~~L~~~~~~l~~~~~~lp-~~e~~~~~L~Re~~~~~~lY~~lL 390 (719)
T PRK11519 343 TLLEKRKALEDEKAKLNGRVTAMP-KTQQEIVRLTRDVESGQQVYMQLL 390 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555554432 234455566666555555554444
No 336
>PF05588 Botulinum_HA-17: Clostridium botulinum HA-17 protein; InterPro: IPR008903 This family consists of several Clostridium botulinum haemagglutinin (HA) subcomponents. C. botulinum type D strain 4947 produces two different sizes of progenitor toxins (M and L) as intact forms without proteolytic processing. The M toxin is composed of neurotoxin (NT) and nontoxic-nonhaemagglutinin (NTNHA), whereas the L toxin is composed of the M toxin and haemagglutinin (HA) subcomponents (HA-70, HA-17, and HA-33) [].; PDB: 2E4M_C.
Probab=31.46 E-value=47 Score=29.57 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=20.7
Q ss_pred ccCCccceeEEEeecccCCCCCeeEEeecCCceeeccC
Q 004893 647 RANGIPVTHFTLQSIYAQGDDEKLEFEYESSNTNIMVN 684 (724)
Q Consensus 647 ~~~g~~~~~~~l~s~y~~~~~~~l~f~~~~~~~~~~~~ 684 (724)
.||| .|++.|+| ++.|.|-+.+|.+.+..+
T Consensus 8 lp~g----ny~iks~f----s~sLyl~~vSg~lSfsn~ 37 (146)
T PF05588_consen 8 LPNG----NYKIKSIF----STSLYLTPVSGNLSFSNQ 37 (146)
T ss_dssp --SE----EEEEEESS-----SSEEEEE-SS-EEEEE-
T ss_pred cCCC----CeeEeeee----cCcEEEEeecceEEeccc
Confidence 6777 99999999 568999999998877654
No 337
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=31.30 E-value=5.7e+02 Score=25.91 Aligned_cols=65 Identities=11% Similarity=0.080 Sum_probs=37.2
Q ss_pred ccchHHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHH
Q 004893 54 LLCTYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQ 125 (724)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~ 125 (724)
..-+|+-++..+.....++.+.++--..+-.++.....-+- .....|..|-.+...++...+.+.
T Consensus 69 s~l~~~~LeeliNkWs~el~~Qe~vF~~q~~qvNaWDr~LI-------~ngekI~~Ly~e~~~vk~~qkrLd 133 (254)
T KOG2196|consen 69 SSLTYKTLEELINKWSLELEEQERVFLQQATQVNAWDRTLI-------ENGEKISGLYNEVVKVKLDQKRLD 133 (254)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------hCcHHHHHHHHHHHHHHhHHHHHH
Confidence 45679999999888888877766655555554444444443 333444444444444444433333
No 338
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=31.26 E-value=2.3e+02 Score=26.28 Aligned_cols=72 Identities=24% Similarity=0.303 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004893 461 LTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKL 532 (724)
Q Consensus 461 ~~~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l 532 (724)
.+..+-+.+-.....|+.|-..|-.....-......+..|...+.....++...-++.+.+...+..+-..+
T Consensus 70 ~~~elA~dIi~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~~i 141 (144)
T PF11221_consen 70 NIKELATDIIRKAKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQELIREI 141 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666666655553221111222233444444445555555555555555555555444443
No 339
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=31.04 E-value=5.9e+02 Score=26.05 Aligned_cols=39 Identities=10% Similarity=0.244 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 213 IGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQ 251 (724)
Q Consensus 213 l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~ 251 (724)
+..+-+..+.+..++|.++..+..++..++..++.+..+
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555556665555555555555555554444
No 340
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=30.97 E-value=2.7e+02 Score=28.80 Aligned_cols=7 Identities=29% Similarity=0.197 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 004893 477 EELESNL 483 (724)
Q Consensus 477 ~~Le~~l 483 (724)
..|++.+
T Consensus 43 ~~le~~~ 49 (263)
T PRK10803 43 TQLERIS 49 (263)
T ss_pred HHHHHHH
Confidence 3333333
No 341
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=30.46 E-value=3.5e+02 Score=30.38 Aligned_cols=11 Identities=18% Similarity=0.404 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 004893 73 TNVEKQVRDYQ 83 (724)
Q Consensus 73 ~~~e~qi~~le 83 (724)
.++++++..++
T Consensus 79 sELEKqLaaLr 89 (475)
T PRK13729 79 AQMQKQYEEIR 89 (475)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 342
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=30.01 E-value=4.8e+02 Score=29.14 Aligned_cols=89 Identities=20% Similarity=0.235 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 175 SLLEGKLTHLSDSIEREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSE 254 (724)
Q Consensus 175 ~~l~~el~e~~~~~e~e~~~L~~~l~~L~~e~~~~~~~l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~ 254 (724)
+.+...++.+..--+.++..|.+..++...+.+ ...+++..++..+.+++.+...|...+.+.+.+++-.-+....
T Consensus 13 ~~l~r~~~~l~~g~e~ef~rl~k~fed~~ek~~----r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ 88 (604)
T KOG3564|consen 13 EQLVRDIEILGEGNEDEFIRLRKDFEDFEEKWK----RTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRR 88 (604)
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 344444444443225566666666665554433 3445677777777888888888888888888888877677677
Q ss_pred HHHHHhchhhhhh
Q 004893 255 VEKKLSSSTFQEF 267 (724)
Q Consensus 255 Le~~~~~L~~e~~ 267 (724)
++..+..++.++.
T Consensus 89 ae~d~~~~E~~i~ 101 (604)
T KOG3564|consen 89 AEADCEKLETQIQ 101 (604)
T ss_pred HhhhHHHHHHHHH
Confidence 7777777765553
No 343
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=29.58 E-value=6.2e+02 Score=25.82 Aligned_cols=11 Identities=36% Similarity=0.709 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 004893 277 KHLQEEIRNYE 287 (724)
Q Consensus 277 k~L~~ql~~le 287 (724)
+.|+.++..|.
T Consensus 185 k~lq~QL~~L~ 195 (246)
T PF00769_consen 185 KRLQEQLKELK 195 (246)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444333
No 344
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=29.31 E-value=63 Score=28.05 Aligned_cols=20 Identities=30% Similarity=0.606 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004893 226 NAEKESEMLKNQMKDLKEQL 245 (724)
Q Consensus 226 ~~E~e~~~L~~el~el~~~l 245 (724)
.++.....+..++++|...|
T Consensus 12 ~ae~~~~~ie~ElEeLTasL 31 (100)
T PF06428_consen 12 EAEQEKEQIESELEELTASL 31 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433
No 345
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=29.28 E-value=8.2e+02 Score=27.10 Aligned_cols=191 Identities=11% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 68 FLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYA--EQELAAAKGREGVLQEQLLKEVDDSRERLKKQIQL 145 (724)
Q Consensus 68 ~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~l--e~el~~~~~~~~~l~er~~~~~~~~~e~lk~~l~~ 145 (724)
...........+.-++.++..++.++...+..+..++.+..-. .....-...++..+..++ ................
T Consensus 162 ~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l-~~~~~~~~~~~~~~~~ 240 (444)
T TIGR03017 162 IELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQL-VAAQAQVMDASSKEGG 240 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Q ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHhHHHH
Q 004893 146 ---------------CSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLSDSIEREKKRLNNEVTQLKRESKSSI 210 (724)
Q Consensus 146 ---------------~~~l~~~L~~e~~~~~~~e~~~~~l~~~l~~l~~el~e~~~~~e~e~~~L~~~l~~L~~e~~~~~ 210 (724)
+..+..++..-...+..+......-.-.+..+..++..+...+..++..+...+..--.......
T Consensus 241 ~~~~~~~~~~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~ 320 (444)
T TIGR03017 241 SSGKDALPEVIANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQRE 320 (444)
T ss_pred cCCcccchhhhcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 004893 211 SRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSST 263 (724)
Q Consensus 211 ~~l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~ 263 (724)
..+...++..+... ..+.....++..|+...+-.......+-.+.....
T Consensus 321 ~~l~~~l~~~~~~~----~~l~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~ 369 (444)
T TIGR03017 321 AELREALENQKAKV----LELNRQRDEMSVLQRDVENAQRAYDAAMQRYTQTR 369 (444)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 346
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=29.27 E-value=2.8e+02 Score=29.15 Aligned_cols=43 Identities=19% Similarity=0.145 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHH
Q 004893 83 QSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQ 125 (724)
Q Consensus 83 e~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~ 125 (724)
-++...|+..+.+.+.++..-..+...+.+++++.+--+.+++
T Consensus 146 ~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq 188 (405)
T KOG2010|consen 146 IYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQ 188 (405)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444443
No 347
>PF15294 Leu_zip: Leucine zipper
Probab=28.61 E-value=6.9e+02 Score=26.02 Aligned_cols=13 Identities=31% Similarity=0.271 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 004893 245 LNECLNQKSEVEK 257 (724)
Q Consensus 245 l~e~~~~~~~Le~ 257 (724)
+.....++.+|.+
T Consensus 262 ltkKn~QiKeLRk 274 (278)
T PF15294_consen 262 LTKKNEQIKELRK 274 (278)
T ss_pred HHhccHHHHHHHH
Confidence 3333333444433
No 348
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=28.53 E-value=9.6e+02 Score=27.69 Aligned_cols=201 Identities=19% Similarity=0.174 Sum_probs=0.0
Q ss_pred hHHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHchHHHHH-HHHHHHHH
Q 004893 57 TYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENF--SKAEAERKKFRDQFLYAEQELAAAKGREGVLQ-EQLLKEVD 133 (724)
Q Consensus 57 ~~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l--~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~-er~~~~~~ 133 (724)
+|+.......++.....+...++.-++.+++++..-- ..-+.++..-...+...++-...+..-...+. +.-.....
T Consensus 165 ~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~gE~e~L~~e~~rLsn~ekl~~~~~~a~~~L~ge~~~~~~~ 244 (557)
T COG0497 165 AWKQARRELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEELEEERKRLSNSEKLAEAIQNALELLSGEDDTVSAL 244 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCchhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHhhhHhHHH-
Q 004893 134 DSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHL---SDSIEREKKRLNNEVTQLKRESKSS- 209 (724)
Q Consensus 134 ~~~e~lk~~l~~~~~l~~~L~~e~~~~~~~e~~~~~l~~~l~~l~~el~e~---~~~~e~e~~~L~~~l~~L~~e~~~~- 209 (724)
..+.+....+....+.-..+..-......+-..+.+...++..+-..++.- ...++..+..|..-.++.......+
T Consensus 245 ~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~ 324 (557)
T COG0497 245 SLLGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLL 324 (557)
T ss_pred HHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004893 210 --ISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSS 261 (724)
Q Consensus 210 --~~~l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~ 261 (724)
..++.+++..+. ..+.....|+.++..+..++...-..+.....+...
T Consensus 325 ~~~~~~~~el~~L~----~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~ 374 (557)
T COG0497 325 EYLDKIKEELAQLD----NSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAK 374 (557)
T ss_pred HHHHHHHHHHHHhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 349
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=28.50 E-value=19 Score=41.49 Aligned_cols=43 Identities=7% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHch
Q 004893 78 QVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGR 120 (724)
Q Consensus 78 qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~ 120 (724)
+|..|...++.|-....=|-.-+..+|+.+.....++..|..+
T Consensus 436 ei~~lr~~iQ~l~~s~~PLgk~~d~iqEDid~M~~El~~W~~e 478 (539)
T PF10243_consen 436 EIEKLRESIQTLCRSANPLGKLMDYIQEDIDSMQKELEMWRSE 478 (539)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333334444443333334444445555555555555555443
No 350
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=28.45 E-value=3.3e+02 Score=22.25 Aligned_cols=67 Identities=16% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 559 QTIEALQTELQKTKEKLQAVEELKSQSGDTGKLVDSYISGKITQLKEQIATLEKREERYKTVFADRISVF 628 (724)
Q Consensus 559 ~~l~~l~~E~~~L~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~rlke~f~~k~~ef 628 (724)
..++.|+.||=.|+-++-.|++.....++.+ ..-+..+.-+|+.++.++.+.+++++.........+
T Consensus 7 ~~i~~L~KENF~LKLrI~fLee~l~~~~~~~---~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 7 EQIDKLKKENFNLKLRIYFLEERLQKLGPES---IEELLKENIELKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhccccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 351
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=28.19 E-value=4e+02 Score=23.08 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 004893 363 KFAALQKEVIDSMMKLGEANAQLKQMEVALDA 394 (724)
Q Consensus 363 ~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~~~ 394 (724)
.+..++.+...+..+...+...+...+....+
T Consensus 7 ~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~E 38 (105)
T cd00632 7 QLQQLQQQLQAYIVQRQKVEAQLNENKKALEE 38 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555544443
No 352
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=28.19 E-value=3.2e+02 Score=31.08 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 70 DALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAK 118 (724)
Q Consensus 70 ~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~ 118 (724)
.++.+++.+-.++.++++++...+.++...+...|.++..++.++++.+
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq 141 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQ 141 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHH
Confidence 3334444444444444444444444444444444444444444444443
No 353
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=28.19 E-value=5.2e+02 Score=24.49 Aligned_cols=48 Identities=17% Similarity=0.237 Sum_probs=23.4
Q ss_pred hHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 61 RQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFL 108 (724)
Q Consensus 61 ~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~ 108 (724)
++..|.++-.-......++..+..++..++.++...-.+.+.+.....
T Consensus 11 ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er 58 (159)
T PF05384_consen 11 IESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRER 58 (159)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444554444555555555555555555555444444444444333
No 354
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=28.02 E-value=3.5e+02 Score=27.94 Aligned_cols=61 Identities=20% Similarity=0.209 Sum_probs=33.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 460 TLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDR 520 (724)
Q Consensus 460 ~~~~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~ 520 (724)
.++..++..+..-...+-+|..+|+.+...+.+|++.+..++-++..+.++-.++-.+++.
T Consensus 40 ~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 40 DRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555554555556666666666555666666555555555555555544444444
No 355
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.98 E-value=9.5e+02 Score=27.42 Aligned_cols=100 Identities=18% Similarity=0.197 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhhhHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Q 004893 190 REKKRLNNEVTQLKRESKSSISR---IGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQE 266 (724)
Q Consensus 190 ~e~~~L~~~l~~L~~e~~~~~~~---l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~ 266 (724)
.++...+++...|+.....+... ....+-.++.....+-.-.-.+..+|.++--.++.....+..|++++.+...-.
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ 410 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIE 410 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555554444221 223333444444444444555566677777777777788888888887775443
Q ss_pred hcc---ccHHHHHHHHHHHHHHHHHH
Q 004893 267 FST---TDSNILVKHLQEEIRNYEAE 289 (724)
Q Consensus 267 ~~~---~e~~~~~k~L~~ql~~le~~ 289 (724)
.+. .+....++.+.....++..+
T Consensus 411 ddar~~pe~~d~i~~le~e~~~y~de 436 (654)
T KOG4809|consen 411 DDARMNPEFADQIKQLEKEASYYRDE 436 (654)
T ss_pred HhhhcChhhHHHHHHHHHHHHHHHHH
Confidence 322 14555666666666665554
No 356
>PF05678 VQ: VQ motif; InterPro: IPR008889 This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Q9LDH1 from SWISSPROT. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors.
Probab=27.88 E-value=46 Score=22.19 Aligned_cols=16 Identities=31% Similarity=0.223 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhcce
Q 004893 624 RISVFRRACCELFGYK 639 (724)
Q Consensus 624 k~~efr~a~~~l~Gy~ 639 (724)
-..+||++|..|+|-.
T Consensus 11 d~~~Fr~lVQ~LTG~~ 26 (31)
T PF05678_consen 11 DPSNFRALVQRLTGAP 26 (31)
T ss_pred CHHHHHHHHHHhHCcC
Confidence 3468999999999953
No 357
>PRK10869 recombination and repair protein; Provisional
Probab=27.68 E-value=1e+03 Score=27.60 Aligned_cols=54 Identities=7% Similarity=0.017 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccHHHHHHHHHHHHHH
Q 004893 232 EMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRN 285 (724)
Q Consensus 232 ~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~~~~~e~~~~~k~L~~ql~~ 285 (724)
..++.++..+....-.+...+.++-.....+..++..++..+.....|..++..
T Consensus 299 ~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~ 352 (553)
T PRK10869 299 AELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEK 352 (553)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 344444444444444444344444444444444444444444444444444443
No 358
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=27.00 E-value=6.1e+02 Score=29.08 Aligned_cols=11 Identities=27% Similarity=0.253 Sum_probs=6.2
Q ss_pred CcceeeccCCC
Q 004893 30 DRRLVIYEDPS 40 (724)
Q Consensus 30 ~~~~~~~~~~~ 40 (724)
...++|..=|.
T Consensus 26 ~~~i~i~~lp~ 36 (525)
T TIGR02231 26 VNELVLKNLPL 36 (525)
T ss_pred ceEEEEeCCCC
Confidence 45666655544
No 359
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=26.49 E-value=4.2e+02 Score=22.87 Aligned_cols=72 Identities=19% Similarity=0.208 Sum_probs=33.9
Q ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHH
Q 004893 359 DIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEER 434 (724)
Q Consensus 359 ~l~~~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~~~~e~ek~~le~e~~~l~~~~~~~~~~~~rLek~~~~~~~er 434 (724)
.....+..+-.+.-.+..++..+.++.+.+-+.+..+...+ .+...+..++..++..+..++.++..++.++
T Consensus 26 ~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~----~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l 97 (108)
T PF02403_consen 26 EDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG----EDAEELKAEVKELKEEIKELEEQLKELEEEL 97 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555554443222111 1223344444455555555555544444443
No 360
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=26.45 E-value=1.4e+03 Score=28.94 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=13.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhh
Q 004893 357 SEDIPVKFAALQKEVIDSMMKLGE 380 (724)
Q Consensus 357 ~~~l~~~~~~Lq~e~~~l~~~~~~ 380 (724)
+..+...+++++-+.-.+.+....
T Consensus 335 ~~~l~~~IAdlRl~~f~~~q~~~~ 358 (1109)
T PRK10929 335 PQQLDTEMAQLRVQRLRYEDLLNK 358 (1109)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHH
Confidence 455666677666555555444443
No 361
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=26.11 E-value=9.9e+02 Score=27.02 Aligned_cols=152 Identities=10% Similarity=0.080 Sum_probs=0.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHH
Q 004893 63 MVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLLKEVDDSRERLKKQ 142 (724)
Q Consensus 63 ~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~~~~~~~~~e~lk~~ 142 (724)
....++...+.....++..+.............+......+......+..--..+........+++ ..+....++++.+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~-~~l~~~~~~L~~~ 114 (475)
T PRK10361 36 AEREEMVAELSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKI-RQMINSEQRLSEQ 114 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHhHHHHHHHHH
Q 004893 143 IQLCSELEAKHRNELNLR---RKAESAAASAEEKASLLEGKLTHLSDSIEREKKRLNNEVTQLKRESKSSISRIGA 215 (724)
Q Consensus 143 l~~~~~l~~~L~~e~~~~---~~~e~~~~~l~~~l~~l~~el~e~~~~~e~e~~~L~~~l~~L~~e~~~~~~~l~~ 215 (724)
.+.+....=.-....... ..++.-+.=+..++..+...+.+....-..+...|..++..|..-...+..+..+
T Consensus 115 F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~n 190 (475)
T PRK10361 115 FENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAIN 190 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 362
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=25.98 E-value=1.2e+03 Score=28.13 Aligned_cols=9 Identities=33% Similarity=0.427 Sum_probs=4.6
Q ss_pred CcccchHHh
Q 004893 52 DHLLCTYQC 60 (724)
Q Consensus 52 ~~~~~~~~~ 60 (724)
+.+.+||+-
T Consensus 467 ~~l~p~Ykl 475 (771)
T TIGR01069 467 ETLSPTYKL 475 (771)
T ss_pred CCCceEEEE
Confidence 345555554
No 363
>PRK11020 hypothetical protein; Provisional
Probab=25.94 E-value=4.7e+02 Score=23.17 Aligned_cols=65 Identities=29% Similarity=0.328 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 558 KQTIEALQTELQKTKEKLQAVEELKSQSGDTGKLVDSYISGKITQLKEQIATLEKREERYKTVFADRISVFRRACCEL 635 (724)
Q Consensus 558 ~~~l~~l~~E~~~L~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~rlke~f~~k~~efr~a~~~l 635 (724)
+.+|..|-.-++.++.+++.+..-+ +. .-+.++..+++.+++++.|||.+-..+.+.=+..+..+
T Consensus 4 K~Eiq~L~drLD~~~~Klaaa~~rg----d~---------~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l~~l 68 (118)
T PRK11020 4 KNEIKRLSDRLDAIRHKLAAASLRG----DA---------EKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKLMKL 68 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC----CH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3445555555555566655444211 11 13578899999999999999999888777666655443
No 364
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=25.71 E-value=6.5e+02 Score=24.73 Aligned_cols=48 Identities=17% Similarity=0.277 Sum_probs=26.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH--------HHHHhhhhHHHHHHHHHHHHHHHH
Q 004893 271 DSNILVKHLQEEIRNYEAEVREAR--------KLKASYENTELLKEKLLEEKSRRE 318 (724)
Q Consensus 271 e~~~~~k~L~~ql~~le~~~~El~--------~Lr~~~~~~ellkee~~~lq~kl~ 318 (724)
.+..++..+..-+.+.+....++. .|+....+++.+++++..|+..|.
T Consensus 129 ~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~Le~~L~ 184 (195)
T PF12761_consen 129 KPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVDGLESHLS 184 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666554444442 255555666666666666665554
No 365
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=25.39 E-value=2e+02 Score=31.39 Aligned_cols=41 Identities=22% Similarity=0.395 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhcccc
Q 004893 505 NNEERRIKSLERENDRLRSEISLLESKLGHGDFSSENTKVLRMVNT 550 (724)
Q Consensus 505 ~~l~~~i~~Le~e~~~l~~e~~~Le~~l~~~~~~~~~~ril~l~~n 550 (724)
..+...+..++..+..+...+..|+....+ .+.||+.+-..
T Consensus 161 ~~i~~~~~~~~k~i~~l~~kl~DlEnrsRR-----nNiRIiGiPEg 201 (370)
T PF02994_consen 161 EEIEQAIKELEKRIKKLEDKLDDLENRSRR-----NNIRIIGIPEG 201 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----TEEEEES----
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhccC-----CceeEEecCCC
Confidence 333444445555666666677777777763 45666666443
No 366
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=25.25 E-value=1.2e+03 Score=27.83 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=9.0
Q ss_pred HHHhhhhHHHHHHHHHHHHH
Q 004893 296 LKASYENTELLKEKLLEEKS 315 (724)
Q Consensus 296 Lr~~~~~~ellkee~~~lq~ 315 (724)
||+.-..+.-|+|-.+.||.
T Consensus 531 lrQrDaEi~RL~eLtR~LQ~ 550 (861)
T PF15254_consen 531 LRQRDAEIERLRELTRTLQN 550 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 367
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=25.15 E-value=5.5e+02 Score=23.70 Aligned_cols=63 Identities=19% Similarity=0.208 Sum_probs=37.4
Q ss_pred chHHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 56 CTYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAK 118 (724)
Q Consensus 56 ~~~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~ 118 (724)
|.++.+...+..+......+-...-.++..+..++.++...-.....+..++..+...+..+.
T Consensus 27 ~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~ 89 (150)
T PF07200_consen 27 PQVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELS 89 (150)
T ss_dssp S--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666667777777766666666666677777777776666666666666666665555543
No 368
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=25.14 E-value=7.9e+02 Score=25.58 Aligned_cols=149 Identities=18% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchhchHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 409 VKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFIEELESNLHAQQE 488 (724)
Q Consensus 409 l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~~~~e~~~~~~~~~~~~~~~~~le~~l~~~~~~i~~Le~~l~~~~~ 488 (724)
++.+...-+..+..+....+.+..-.+.....++.+.++.+ ..+.+...+=+.|-.+|..+-.
T Consensus 218 ~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit-----------------~~LEkI~SREK~lNnqL~~l~q 280 (384)
T KOG0972|consen 218 LKQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEIT-----------------KALEKIASREKSLNNQLASLMQ 280 (384)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCcccchhhhccccccchHHHHHHHHHHHHH
Q 004893 489 INSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLGH-GDFSSENTKVLRMVNTLAVDNEAKQTIEALQTE 567 (724)
Q Consensus 489 ~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~~-~~~~~~~~ril~l~~n~~~~~~~~~~l~~l~~E 567 (724)
.-.++...+..+...+..+..-+..-...+.+...++..+..+++. |.--....-+. ..++.+..|+.|
T Consensus 281 ~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplv----------kIkqavsKLk~e 350 (384)
T KOG0972|consen 281 KFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLV----------KIKQAVSKLKEE 350 (384)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHH----------HHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhcc
Q 004893 568 LQKTKEKLQAVEELKSQ 584 (724)
Q Consensus 568 ~~~L~~~l~~l~~~~~~ 584 (724)
...+..++..++....+
T Consensus 351 t~~mnv~igv~ehs~lq 367 (384)
T KOG0972|consen 351 TQTMNVQIGVFEHSILQ 367 (384)
T ss_pred HHhhhhheehhhHHHHH
No 369
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=25.13 E-value=9.4e+02 Score=26.40 Aligned_cols=13 Identities=8% Similarity=-0.018 Sum_probs=5.8
Q ss_pred CCCCCCCcceeec
Q 004893 24 PTAGGSDRRLVIY 36 (724)
Q Consensus 24 ~~~~~~~~~~~~~ 36 (724)
+..+|+++...++
T Consensus 28 s~ss~~GG~~~p~ 40 (552)
T KOG2129|consen 28 SHSSHSGGGHEPF 40 (552)
T ss_pred cccCCCCCCCCCC
Confidence 3444545544433
No 370
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=25.10 E-value=7.8e+02 Score=25.47 Aligned_cols=62 Identities=26% Similarity=0.393 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004893 472 KEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLG 533 (724)
Q Consensus 472 ~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~ 533 (724)
....+.....++.......++.+.++..+..++.+.+.++..|+.+...+...+.-+..+++
T Consensus 198 ~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~ 259 (269)
T PF05278_consen 198 KDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVE 259 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444445555666667777777777788888877777777776666654
No 371
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=25.00 E-value=1.9e+02 Score=27.41 Aligned_cols=74 Identities=20% Similarity=0.270 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004893 558 KQTIEALQTELQKTKEKLQAVEELKSQSGDTGKLVD-SYISGKITQLKEQIATLEKREERYKTVFADRISVFRRACCELF 636 (724)
Q Consensus 558 ~~~l~~l~~E~~~L~~~l~~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~k~~~rlke~f~~k~~efr~a~~~l~ 636 (724)
..+...|+.|+.+|+.++.. .| ..+.-.+ ..+.++++.+.++++.+++...--+..|.....-++-++..+.
T Consensus 39 ~~~~~~l~~Ei~~l~~E~~~------iS-~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (161)
T PF04420_consen 39 SKEQRQLRKEILQLKRELNA------IS-AQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVLWVLTTLP 111 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHTT------S--TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH--------
T ss_pred cHHHHHHHHHHHHHHHHHHc------CC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888866552 11 1110000 1145666777777777666665555555555555555554444
Q ss_pred cc
Q 004893 637 GY 638 (724)
Q Consensus 637 Gy 638 (724)
-|
T Consensus 112 ~~ 113 (161)
T PF04420_consen 112 FF 113 (161)
T ss_dssp --
T ss_pred Hh
Confidence 33
No 372
>PF14992 TMCO5: TMCO5 family
Probab=24.78 E-value=8.1e+02 Score=25.53 Aligned_cols=29 Identities=14% Similarity=0.154 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Q 004893 416 SKSEVKRIESMLSVVTEERDKLRNVVNEF 444 (724)
Q Consensus 416 ~~~~~~rLek~~~~~~~er~~lr~~l~~~ 444 (724)
+....++||+......+-...+....+.-
T Consensus 68 le~e~~~LE~~ne~l~~~~~elq~k~~e~ 96 (280)
T PF14992_consen 68 LELETAKLEKENEHLSKSVQELQRKQDEQ 96 (280)
T ss_pred HHhhhHHHhhhhHhhhhhhhhhhhhhccc
Confidence 44445666666665555555666555543
No 373
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=24.39 E-value=6.7e+02 Score=24.43 Aligned_cols=12 Identities=8% Similarity=0.490 Sum_probs=5.5
Q ss_pred HHHHHHHHHHhH
Q 004893 334 MDQLEDELSSWK 345 (724)
Q Consensus 334 ~~~Le~el~~w~ 345 (724)
+..+......|.
T Consensus 144 ~~~~~~~anrwT 155 (188)
T PF03962_consen 144 IKIAKEAANRWT 155 (188)
T ss_pred HHHHHHHHHHHH
Confidence 333444455554
No 374
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=24.16 E-value=4.1e+02 Score=27.22 Aligned_cols=9 Identities=33% Similarity=0.405 Sum_probs=5.4
Q ss_pred CCcceeecc
Q 004893 29 SDRRLVIYE 37 (724)
Q Consensus 29 ~~~~~~~~~ 37 (724)
...+.+||.
T Consensus 43 ~~~rkii~~ 51 (262)
T PF14257_consen 43 SAQRKIIKT 51 (262)
T ss_pred cccceEEEE
Confidence 345677774
No 375
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=24.06 E-value=7e+02 Score=28.54 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 004893 310 LLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLI 348 (724)
Q Consensus 310 ~~~lq~kl~~~E~~~~~~~~le~~~~~Le~el~~w~~~~ 348 (724)
+..++.++..++... ..++.++..++..+.-|....
T Consensus 73 ~~~l~~~l~~l~~~~---~~~~~~~~~~~~~~~~l~~~~ 108 (525)
T TIGR02231 73 LAELRKQIRELEAEL---RDLEDRGDALKALAKFLEDIR 108 (525)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444433 555556666666666666554
No 376
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=24.03 E-value=2.4e+02 Score=25.85 Aligned_cols=54 Identities=15% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 472 KEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEI 525 (724)
Q Consensus 472 ~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~ 525 (724)
+...+.++.+.+..+....++++.++..-...+..++.++..+...+..+...+
T Consensus 78 l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 78 LAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
No 377
>PF14282 FlxA: FlxA-like protein
Probab=23.80 E-value=4.9e+02 Score=22.70 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004893 466 ESSLAKKEEFIEELESNLHAQQE 488 (724)
Q Consensus 466 e~~l~~~~~~i~~Le~~l~~~~~ 488 (724)
...+..+..+|..|..+|..+..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 45566677777777777766543
No 378
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=23.76 E-value=5.8e+02 Score=23.46 Aligned_cols=8 Identities=13% Similarity=0.409 Sum_probs=3.2
Q ss_pred HHHHHHhc
Q 004893 437 LRNVVNEF 444 (724)
Q Consensus 437 lr~~l~~~ 444 (724)
+|..+..+
T Consensus 103 yk~rLk~L 110 (136)
T PF04871_consen 103 YKERLKEL 110 (136)
T ss_pred HHHHHHHc
Confidence 34444443
No 379
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=23.75 E-value=8.3e+02 Score=25.31 Aligned_cols=44 Identities=23% Similarity=0.319 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 100 RKKFRDQFLYAEQELAAAKGREGVLQEQLLKEVDDSRERLKKQIQ 144 (724)
Q Consensus 100 ~~~lq~~l~~le~el~~~~~~~~~l~er~~~~~~~~~e~lk~~l~ 144 (724)
+..++.++......+..+..++..+..++ +......++.++++.
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KI-ekkk~ELER~qKRL~ 214 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKI-EKKKQELERNQKRLQ 214 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555 333333333333333
No 380
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=23.44 E-value=1.2e+02 Score=18.69 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 004893 469 LAKKEEFIEELESNLH 484 (724)
Q Consensus 469 l~~~~~~i~~Le~~l~ 484 (724)
+..++.+|.+|+.+|.
T Consensus 3 ~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 3 MNRLRNRISDLERQLS 18 (23)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455666666666654
No 381
>PF14282 FlxA: FlxA-like protein
Probab=23.38 E-value=4.3e+02 Score=23.10 Aligned_cols=18 Identities=11% Similarity=0.174 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004893 99 ERKKFRDQFLYAEQELAA 116 (724)
Q Consensus 99 ~~~~lq~~l~~le~el~~ 116 (724)
.+..++.+|..|+..|..
T Consensus 52 q~q~Lq~QI~~LqaQI~q 69 (106)
T PF14282_consen 52 QIQLLQAQIQQLQAQIAQ 69 (106)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 382
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=23.14 E-value=1e+03 Score=26.07 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=21.6
Q ss_pred CCchHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHH
Q 004893 357 SEDIPVKFAALQKEVIDSM-MKLGEANAQLKQMEVAL 392 (724)
Q Consensus 357 ~~~l~~~~~~Lq~e~~~l~-~~~~~~~~~~~~le~~~ 392 (724)
+..|...+..|...+..|. ..+..+..++..+-...
T Consensus 241 ~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~ 277 (388)
T PF04912_consen 241 SSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSEL 277 (388)
T ss_pred cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 5567777878877777763 24455555555544433
No 383
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.52 E-value=4.2e+02 Score=21.45 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHH
Q 004893 84 SKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQL 128 (724)
Q Consensus 84 ~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~ 128 (724)
..+..+...+.-.+..+..++..+.+....+.+...++..+-+++
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl 52 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444444444444444433
No 384
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=22.38 E-value=1e+03 Score=25.86 Aligned_cols=28 Identities=4% Similarity=0.016 Sum_probs=14.3
Q ss_pred HHhhHhhHhHHHHHHHHHHHHHHHHHHH
Q 004893 58 YQCRQMVKSDFLDALTNVEKQVRDYQSK 85 (724)
Q Consensus 58 ~~~~~~~~~~~~~~l~~~e~qi~~le~~ 85 (724)
+.-+...+.+++.-...++..+..++..
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lke~ 289 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLKEQ 289 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555443
No 385
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=22.20 E-value=7.4e+02 Score=24.14 Aligned_cols=90 Identities=16% Similarity=0.186 Sum_probs=0.0
Q ss_pred hHHhhHhhHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHH
Q 004893 57 TYQCRQMVKSDFLDALTNVEKQ-VRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLLKEVDDS 135 (724)
Q Consensus 57 ~~~~~~~~~~~~~~~l~~~e~q-i~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~~~~~~~~ 135 (724)
.|+.+-..-..|.....-...+ ...+..++..++.+...+...+..+...+..++...+............-...+...
T Consensus 99 ~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~ 178 (189)
T PF10211_consen 99 AYQTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQ 178 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 004893 136 RERLKKQIQLC 146 (724)
Q Consensus 136 ~e~lk~~l~~~ 146 (724)
...++..++.+
T Consensus 179 ~~ql~~~l~~~ 189 (189)
T PF10211_consen 179 NQQLKAQLEQI 189 (189)
T ss_pred HHHHHHHHhcC
No 386
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=21.91 E-value=6.3e+02 Score=23.22 Aligned_cols=31 Identities=13% Similarity=0.259 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 004893 232 EMLKNQMKDLKEQLNECLNQKSEVEKKLSSS 262 (724)
Q Consensus 232 ~~L~~el~el~~~l~e~~~~~~~Le~~~~~L 262 (724)
...+.++++|---+.+....+..+..++..|
T Consensus 80 ~~~q~EldDLL~ll~Dle~K~~kyk~rLk~L 110 (136)
T PF04871_consen 80 KEAQSELDDLLVLLGDLEEKRKKYKERLKEL 110 (136)
T ss_pred HhhhhhHHHHHHHHHhHHHHHHHHHHHHHHc
Confidence 4556666666666666666666666666655
No 387
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=21.90 E-value=4.7e+02 Score=21.73 Aligned_cols=37 Identities=27% Similarity=0.414 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 493 QRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLE 529 (724)
Q Consensus 493 l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le 529 (724)
++..+..+-.++...+.+...|..++.-|..-|..|-
T Consensus 28 LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm 64 (80)
T PF10224_consen 28 LQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLM 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444455555555555555555555553
No 388
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=21.80 E-value=4.6e+02 Score=21.66 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004893 468 SLAKKEEFIEELESNLHAQQE 488 (724)
Q Consensus 468 ~l~~~~~~i~~Le~~l~~~~~ 488 (724)
.++.++.+++.+..++..++.
T Consensus 5 lLd~ir~Ef~~~~~e~~~~k~ 25 (79)
T PF08581_consen 5 LLDAIRQEFENLSQEANSYKH 25 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554444433
No 389
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=21.59 E-value=5.6e+02 Score=22.49 Aligned_cols=42 Identities=24% Similarity=0.384 Sum_probs=24.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 63 MVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFR 104 (724)
Q Consensus 63 ~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq 104 (724)
|.|.++-+++..++.+|..+-.++..++..+..+-.+...++
T Consensus 1 mdKkeiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~ 42 (114)
T COG4467 1 MDKKEIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALR 42 (114)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 345666666666666666666666666666654444433333
No 390
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=21.38 E-value=2.6e+02 Score=21.11 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004893 557 AKQTIEALQTELQKTKEKLQAV 578 (724)
Q Consensus 557 ~~~~l~~l~~E~~~L~~~l~~l 578 (724)
+...|..|..||..|+.++...
T Consensus 27 a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 27 ARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999888643
No 391
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=21.07 E-value=9.4e+02 Score=24.92 Aligned_cols=40 Identities=15% Similarity=0.254 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHH
Q 004893 89 LNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQL 128 (724)
Q Consensus 89 l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~ 128 (724)
....+.....+++.+.+.+...+.++..+..++.....++
T Consensus 198 ~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl 237 (269)
T PF05278_consen 198 KDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRL 237 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444443
No 392
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=20.99 E-value=1.4e+03 Score=27.07 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004893 229 KESEMLKNQMKDLKEQLNE 247 (724)
Q Consensus 229 ~e~~~L~~el~el~~~l~e 247 (724)
.+...|-.++.+++..+--
T Consensus 300 ~~r~kL~N~i~eLkGnIRV 318 (670)
T KOG0239|consen 300 EERRKLHNEILELKGNIRV 318 (670)
T ss_pred HHHHHHHHHHHHhhcCceE
Confidence 3445666666666665543
No 393
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=20.97 E-value=1.3e+03 Score=26.56 Aligned_cols=8 Identities=50% Similarity=0.746 Sum_probs=5.1
Q ss_pred eeeccCCC
Q 004893 33 LVIYEDPS 40 (724)
Q Consensus 33 ~~~~~~~~ 40 (724)
|||-..|+
T Consensus 304 lIi~csPs 311 (607)
T KOG0240|consen 304 LIICCSPS 311 (607)
T ss_pred EEEecCCc
Confidence 67766655
No 394
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=20.93 E-value=2.7e+02 Score=24.21 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004893 161 RKAESAAASAEEKASLLEGKL 181 (724)
Q Consensus 161 ~~~e~~~~~l~~~l~~l~~el 181 (724)
..++.....+...++.|...|
T Consensus 11 ~~ae~~~~~ie~ElEeLTasL 31 (100)
T PF06428_consen 11 EEAEQEKEQIESELEELTASL 31 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443333333
No 395
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=20.82 E-value=68 Score=28.63 Aligned_cols=22 Identities=14% Similarity=0.104 Sum_probs=0.0
Q ss_pred chHHhhHhhHhHHHHHHHHHHH
Q 004893 56 CTYQCRQMVKSDFLDALTNVEK 77 (724)
Q Consensus 56 ~~~~~~~~~~~~~~~~l~~~e~ 77 (724)
-+|+.++..+.....++....+
T Consensus 15 l~~k~Leeiin~W~~eLe~q~k 36 (116)
T PF05064_consen 15 LKGKTLEEIINKWNKELEEQEK 36 (116)
T ss_dssp ----------------------
T ss_pred cccCcHHHHHHHHHHHHHHHHH
Confidence 4566666665555555544433
No 396
>PF15234 LAT: Linker for activation of T-cells
Probab=20.53 E-value=78 Score=30.22 Aligned_cols=17 Identities=41% Similarity=0.567 Sum_probs=13.9
Q ss_pred CCCcccCCCCCCCCCcc
Q 004893 16 GEPIIECPPTAGGSDRR 32 (724)
Q Consensus 16 ~~~~~~~~~~~~~~~~~ 32 (724)
-=||++||-|.+||+|-
T Consensus 76 LLpIPRSPQp~ggShrm 92 (230)
T PF15234_consen 76 LLPIPRSPQPPGGSHRM 92 (230)
T ss_pred cccCCCCCCCCCCcccC
Confidence 46899999999998763
No 397
>PRK09343 prefoldin subunit beta; Provisional
Probab=20.48 E-value=6.2e+02 Score=22.64 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004893 229 KESEMLKNQMKDLKEQLNECLNQ 251 (724)
Q Consensus 229 ~e~~~L~~el~el~~~l~e~~~~ 251 (724)
.++..++.+...++..+.+....
T Consensus 85 ~~ik~lekq~~~l~~~l~e~q~~ 107 (121)
T PRK09343 85 LRSRTLEKQEKKLREKLKELQAK 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443333333
No 398
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=20.46 E-value=3.4e+02 Score=19.95 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 600 ITQLKEQIATLEKREERYKTVFADRI 625 (724)
Q Consensus 600 ~~~l~~~~~~~~k~~~rlke~f~~k~ 625 (724)
++.|+.++..++.+.++|...|+..-
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yK 26 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYK 26 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999998887743
Done!