Query 004893
Match_columns 724
No_of_seqs 413 out of 1384
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 09:02:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004893.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004893hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dzo_A Mitotic spindle assembl 100.0 1.2E-39 4E-44 288.4 13.3 118 597-724 3-123 (123)
2 1go4_E MAD1 (mitotic arrest de 99.3 7E-12 2.4E-16 104.5 6.8 82 501-582 11-98 (100)
3 1c1g_A Tropomyosin; contractIl 98.7 0.00045 1.5E-08 70.1 40.0 61 56-116 6-66 (284)
4 1c1g_A Tropomyosin; contractIl 98.6 0.00098 3.3E-08 67.5 38.8 12 332-343 265-276 (284)
5 1i84_S Smooth muscle myosin he 98.2 3.6E-06 1.2E-10 103.7 11.3 13 559-571 1151-1163(1184)
6 3na7_A HP0958; flagellar bioge 97.1 0.1 3.5E-06 52.4 23.0 67 60-126 15-81 (256)
7 3na7_A HP0958; flagellar bioge 96.6 0.35 1.2E-05 48.4 22.7 80 405-496 47-126 (256)
8 2v71_A Nuclear distribution pr 96.6 0.21 7.1E-06 47.0 19.2 72 46-120 2-78 (189)
9 2v71_A Nuclear distribution pr 96.5 0.41 1.4E-05 44.9 20.0 26 231-256 90-115 (189)
10 3vkg_A Dynein heavy chain, cyt 95.3 4.7 0.00016 53.9 29.4 54 67-120 1903-1956(3245)
11 2v66_B Nuclear distribution pr 95.3 0.56 1.9E-05 39.9 14.0 80 328-412 6-85 (111)
12 3vkg_A Dynein heavy chain, cyt 95.2 1.9 6.7E-05 57.4 25.3 46 304-349 1906-1951(3245)
13 3o0z_A RHO-associated protein 95.1 2 6.7E-05 39.4 20.7 38 148-185 73-110 (168)
14 2dfs_A Myosin-5A; myosin-V, in 94.3 1.5 5.3E-05 52.9 19.9 25 223-247 1024-1048(1080)
15 1m1j_B Fibrinogen beta chain; 92.9 2.6 8.9E-05 45.4 16.5 18 16-33 30-47 (464)
16 2ocy_A RAB guanine nucleotide 91.1 8.5 0.00029 34.8 21.2 38 225-262 111-148 (154)
17 3o0z_A RHO-associated protein 91.0 9.2 0.00031 35.0 23.0 68 61-128 11-78 (168)
18 3hnw_A Uncharacterized protein 90.0 3 0.0001 37.2 11.3 68 466-533 67-134 (138)
19 2efr_A General control protein 90.0 11 0.00037 34.2 21.2 46 222-267 70-115 (155)
20 2v66_B Nuclear distribution pr 89.8 8.5 0.00029 32.7 13.8 65 422-496 7-71 (111)
21 3oja_B Anopheles plasmodium-re 89.2 5.9 0.0002 44.6 16.0 70 464-533 506-582 (597)
22 3u1c_A Tropomyosin alpha-1 cha 89.0 9.3 0.00032 32.0 15.2 16 161-176 82-97 (101)
23 3ol1_A Vimentin; structural ge 88.4 12 0.0004 32.4 14.3 36 48-83 5-40 (119)
24 2fxo_A Myosin heavy chain, car 88.3 13 0.00043 32.7 19.2 47 74-120 10-56 (129)
25 3swk_A Vimentin; cytoskeleton, 86.7 6.8 0.00023 31.8 10.4 74 366-439 4-84 (86)
26 3ol1_A Vimentin; structural ge 86.7 12 0.00041 32.3 12.7 81 362-442 20-107 (119)
27 3u59_A Tropomyosin beta chain; 85.7 15 0.0005 30.8 14.7 15 161-175 82-96 (101)
28 2v4h_A NF-kappa-B essential mo 85.0 16 0.00055 30.6 12.3 38 58-95 19-56 (110)
29 3a7p_A Autophagy protein 16; c 84.4 17 0.00057 32.5 12.4 65 64-128 69-133 (152)
30 3ghg_A Fibrinogen alpha chain; 83.3 13 0.00044 40.0 13.2 52 152-203 125-189 (562)
31 3hnw_A Uncharacterized protein 83.1 9.1 0.00031 34.1 10.4 6 33-38 12-17 (138)
32 3a7p_A Autophagy protein 16; c 82.5 12 0.0004 33.5 10.6 63 460-522 68-130 (152)
33 3q8t_A Beclin-1; autophagy, AT 81.9 14 0.00047 30.6 10.4 42 76-117 10-51 (96)
34 3u59_A Tropomyosin beta chain; 80.3 24 0.00083 29.4 12.3 37 82-118 28-64 (101)
35 2ocy_A RAB guanine nucleotide 79.7 35 0.0012 30.8 19.8 9 232-240 82-90 (154)
36 2jee_A YIIU; FTSZ, septum, coi 79.7 21 0.00073 28.3 11.4 60 61-120 11-70 (81)
37 3qh9_A Liprin-beta-2; coiled-c 77.4 25 0.00084 27.8 9.8 62 59-120 15-76 (81)
38 1ic2_A Tropomyosin alpha chain 76.7 27 0.00091 27.8 11.0 53 68-120 11-63 (81)
39 2eqb_B RAB guanine nucleotide 75.3 33 0.0011 28.2 11.8 12 430-441 81-92 (97)
40 3swk_A Vimentin; cytoskeleton, 75.2 31 0.0011 27.8 10.7 33 233-265 46-78 (86)
41 3u1c_A Tropomyosin alpha-1 cha 74.8 36 0.0012 28.4 14.8 28 89-116 35-62 (101)
42 2jee_A YIIU; FTSZ, septum, coi 74.6 30 0.001 27.5 12.2 71 462-532 8-78 (81)
43 1deq_A Fibrinogen (alpha chain 74.0 75 0.0026 32.8 15.0 22 161-182 137-158 (390)
44 2efr_A General control protein 72.2 56 0.0019 29.5 24.7 14 191-204 99-112 (155)
45 3ghg_A Fibrinogen alpha chain; 71.5 54 0.0019 35.3 13.7 9 54-62 43-51 (562)
46 3i00_A HIP-I, huntingtin-inter 67.6 10 0.00035 32.8 6.1 12 252-263 42-53 (120)
47 1x79_B RAB GTPase binding effe 67.0 58 0.002 27.6 11.8 59 57-118 7-65 (112)
48 2ve7_A Kinetochore protein HEC 65.2 9.7 0.00033 39.1 6.5 76 630-713 227-305 (315)
49 3nmd_A CGMP dependent protein 64.2 22 0.00076 27.5 6.7 45 57-108 20-64 (72)
50 2e7s_A RAB guanine nucleotide 63.5 21 0.00072 31.3 7.3 13 312-324 19-31 (135)
51 3nmd_A CGMP dependent protein 62.9 32 0.0011 26.7 7.3 46 218-263 22-67 (72)
52 3bas_A Myosin heavy chain, str 62.9 60 0.002 26.3 12.0 72 462-533 16-87 (89)
53 2v4h_A NF-kappa-B essential mo 62.8 68 0.0023 26.9 12.3 30 152-181 77-106 (110)
54 2oqq_A Transcription factor HY 62.7 30 0.001 23.5 6.2 33 461-493 4-36 (42)
55 3tnu_A Keratin, type I cytoske 61.3 83 0.0028 27.4 13.7 9 188-196 117-125 (131)
56 2lw1_A ABC transporter ATP-bin 60.1 63 0.0022 26.0 9.4 65 507-580 20-84 (89)
57 3mq7_A Bone marrow stromal ant 59.5 80 0.0027 26.7 10.6 63 469-534 48-110 (121)
58 3oja_A Leucine-rich immune mol 59.4 1.9E+02 0.0066 31.0 16.6 37 217-253 437-473 (487)
59 1deq_A Fibrinogen (alpha chain 58.8 1.7E+02 0.0058 30.2 14.9 8 54-61 46-53 (390)
60 3i00_A HIP-I, huntingtin-inter 57.5 93 0.0032 26.7 11.2 9 233-241 51-59 (120)
61 4gkw_A Spindle assembly abnorm 56.6 96 0.0033 26.6 22.5 58 66-123 14-71 (167)
62 1wt6_A Myotonin-protein kinase 55.8 74 0.0025 25.1 9.1 31 151-181 17-47 (81)
63 3iv1_A Tumor susceptibility ge 55.0 76 0.0026 25.0 8.9 58 374-445 16-73 (78)
64 3htk_A Structural maintenance 54.2 62 0.0021 23.8 8.8 50 64-113 6-55 (60)
65 4gkw_A Spindle assembly abnorm 54.1 1.1E+02 0.0036 26.4 22.3 49 271-319 109-158 (167)
66 3iv1_A Tumor susceptibility ge 53.7 80 0.0027 24.9 9.6 60 473-532 17-76 (78)
67 3bas_A Myosin heavy chain, str 52.1 92 0.0032 25.1 12.4 46 74-119 11-56 (89)
68 3s9g_A Protein hexim1; cyclin 51.8 97 0.0033 25.3 9.5 50 47-96 8-63 (104)
69 2w83_C C-JUN-amino-terminal ki 50.9 86 0.0029 24.4 9.7 42 491-532 33-74 (77)
70 1m1j_A Fibrinogen alpha subuni 50.4 2.5E+02 0.0086 29.7 15.7 25 509-533 132-156 (491)
71 3efg_A Protein SLYX homolog; x 50.0 47 0.0016 26.2 6.7 50 472-528 12-61 (78)
72 1ic2_A Tropomyosin alpha chain 49.3 95 0.0033 24.5 11.9 21 88-108 10-30 (81)
73 3oja_A Leucine-rich immune mol 48.4 1.9E+02 0.0064 31.1 13.9 17 98-114 374-390 (487)
74 2l5g_B Putative uncharacterize 48.0 46 0.0016 22.7 5.2 34 65-98 4-37 (42)
75 3s4r_A Vimentin; alpha-helix, 47.1 1.2E+02 0.004 24.8 12.1 30 472-501 54-83 (93)
76 1x8y_A Lamin A/C; structural p 46.8 1.1E+02 0.0038 24.5 9.7 24 97-120 27-50 (86)
77 1m1j_A Fibrinogen alpha subuni 46.0 2.9E+02 0.01 29.2 14.9 24 161-184 135-158 (491)
78 1go4_E MAD1 (mitotic arrest de 45.3 1.3E+02 0.0043 25.0 8.7 24 557-580 17-40 (100)
79 3qh9_A Liprin-beta-2; coiled-c 43.1 1.2E+02 0.0041 23.9 10.1 34 316-349 17-50 (81)
80 2eqb_B RAB guanine nucleotide 42.6 1.4E+02 0.0048 24.5 14.7 53 66-118 8-60 (97)
81 3mq9_A Bone marrow stromal ant 41.9 3.4E+02 0.012 28.8 16.2 23 223-245 444-466 (471)
82 3s9g_A Protein hexim1; cyclin 41.5 1.4E+02 0.0049 24.3 8.4 47 479-525 42-88 (104)
83 3cvf_A Homer-3, homer protein 40.8 1.3E+02 0.0045 23.7 8.9 15 101-115 23-37 (79)
84 3uux_B Mitochondrial division 40.5 2.3E+02 0.0079 27.2 11.0 65 45-128 136-200 (242)
85 3cvf_A Homer-3, homer protein 40.5 1.3E+02 0.0046 23.7 10.1 43 460-502 13-55 (79)
86 2ezd_A High mobility group pro 39.2 12 0.00039 22.4 1.1 10 5-14 1-10 (26)
87 1f5n_A Interferon-induced guan 38.8 3E+02 0.01 30.5 13.6 136 51-205 440-582 (592)
88 3jsv_C NF-kappa-B essential mo 38.5 1.6E+02 0.0055 24.0 9.6 28 153-180 56-83 (94)
89 3efg_A Protein SLYX homolog; x 37.8 93 0.0032 24.5 6.6 47 82-128 12-58 (78)
90 2w83_C C-JUN-amino-terminal ki 37.5 1.4E+02 0.0049 23.2 9.5 33 401-433 41-73 (77)
91 2xdj_A Uncharacterized protein 37.4 1.6E+02 0.0053 23.5 10.0 40 492-531 24-63 (83)
92 3uux_B Mitochondrial division 36.6 3E+02 0.01 26.5 11.9 31 83-113 176-206 (242)
93 3jsv_C NF-kappa-B essential mo 36.3 1.7E+02 0.006 23.8 9.4 33 64-96 3-35 (94)
94 3s4r_A Vimentin; alpha-helix, 36.1 1.7E+02 0.006 23.7 11.6 13 406-418 58-70 (93)
95 3cve_A Homer protein homolog 1 35.5 1.5E+02 0.0052 22.9 10.1 41 461-501 8-48 (72)
96 2i1j_A Moesin; FERM, coiled-co 34.9 54 0.0018 36.5 6.7 15 273-287 510-524 (575)
97 2zqm_A Prefoldin beta subunit 34.3 2E+02 0.0069 23.9 11.5 81 363-443 14-109 (117)
98 4dzn_A Coiled-coil peptide CC- 33.5 75 0.0026 19.5 4.1 23 558-580 8-30 (33)
99 4emc_A Monopolin complex subun 33.2 2.5E+02 0.0085 26.0 9.5 46 69-114 12-57 (190)
100 1a93_B MAX protein, coiled coi 33.1 79 0.0027 20.6 4.4 25 508-532 6-30 (34)
101 2akf_A Coronin-1A; coiled coil 32.7 66 0.0023 19.9 3.7 28 596-623 4-31 (32)
102 3mq7_A Bone marrow stromal ant 32.4 2.3E+02 0.0078 23.9 13.8 19 558-576 91-109 (121)
103 1fxk_A Prefoldin; archaeal pro 32.3 2.1E+02 0.0071 23.4 11.8 80 362-441 8-102 (107)
104 4h22_A Leucine-rich repeat fli 32.1 2.2E+02 0.0074 23.6 11.5 66 62-127 8-73 (103)
105 3mov_A Lamin-B1; LMNB1, B-type 30.6 2.2E+02 0.0076 23.2 8.8 24 97-120 36-59 (95)
106 1m1j_C Fibrinogen gamma chain; 30.3 5E+02 0.017 27.2 13.9 20 165-184 112-131 (409)
107 1gk4_A Vimentin; intermediate 30.1 2.1E+02 0.007 22.7 12.4 40 79-121 10-49 (84)
108 3htk_A Structural maintenance 29.6 1.6E+02 0.0056 21.4 8.4 15 101-115 29-43 (60)
109 1lwu_C Fibrinogen gamma chain; 29.3 1.2E+02 0.0043 30.8 7.7 31 57-87 6-36 (323)
110 2ftx_A Hypothetical 25.2 kDa p 29.2 1.2E+02 0.0041 24.6 6.0 73 631-714 9-83 (90)
111 1gd2_E Transcription factor PA 28.8 1.1E+02 0.0036 23.6 5.4 13 474-486 29-41 (70)
112 1ci6_A Transcription factor AT 28.5 1.6E+02 0.0056 21.9 6.4 21 328-348 40-60 (63)
113 3iox_A AGI/II, PA; alpha helix 28.3 5.8E+02 0.02 27.3 14.9 6 547-552 262-267 (497)
114 1zxa_A CGMP-dependent protein 28.3 1.1E+02 0.0039 23.3 5.3 30 68-97 16-45 (67)
115 1jcd_A Major outer membrane li 28.0 1.7E+02 0.0058 21.1 7.3 25 462-486 6-30 (52)
116 3ghg_B Fibrinogen beta chain; 27.4 5.8E+02 0.02 27.1 14.7 60 54-115 74-133 (461)
117 2yy0_A C-MYC-binding protein; 27.1 1.2E+02 0.004 22.0 5.1 32 413-444 21-52 (53)
118 2oqq_A Transcription factor HY 26.9 1.5E+02 0.0052 20.1 6.2 23 501-523 16-38 (42)
119 2e4m_C HA-17; botulinum toxin, 26.7 51 0.0017 28.1 3.4 32 647-686 8-39 (146)
120 1l8d_A DNA double-strand break 26.5 2.7E+02 0.0094 23.0 12.1 29 78-106 11-39 (112)
121 3gp4_A Transcriptional regulat 26.3 1.5E+02 0.0052 26.0 6.9 67 52-118 49-115 (142)
122 3iox_A AGI/II, PA; alpha helix 25.9 6.3E+02 0.022 27.0 17.1 22 82-103 7-28 (497)
123 2yy0_A C-MYC-binding protein; 25.6 1.6E+02 0.0056 21.2 5.6 26 507-532 24-49 (53)
124 1t2k_D Cyclic-AMP-dependent tr 25.5 2E+02 0.0069 21.1 6.4 33 312-347 26-58 (61)
125 1gd2_E Transcription factor PA 25.5 1.7E+02 0.0057 22.5 6.0 34 78-111 30-63 (70)
126 2wt7_A Proto-oncogene protein 25.2 2.1E+02 0.007 21.3 6.4 34 312-348 27-60 (63)
127 2q6q_A Spindle POLE BODY compo 24.5 2.3E+02 0.0078 21.4 9.0 52 66-117 6-57 (74)
128 1wt6_A Myotonin-protein kinase 23.5 2.7E+02 0.0093 21.9 8.9 44 401-444 28-71 (81)
129 1ci6_A Transcription factor AT 23.2 2.3E+02 0.008 21.0 6.4 33 410-442 29-61 (63)
130 1l8d_A DNA double-strand break 23.1 3.2E+02 0.011 22.5 12.5 16 429-444 28-43 (112)
131 3a7o_A Autophagy protein 16; c 23.1 2.5E+02 0.0086 21.4 7.6 56 462-517 20-75 (75)
132 2b9c_A Striated-muscle alpha t 23.1 3.9E+02 0.013 23.6 14.9 128 137-268 17-147 (147)
133 1m1j_C Fibrinogen gamma chain; 22.5 6.8E+02 0.023 26.2 13.2 15 629-643 230-251 (409)
134 3hhm_B NISH2 P85alpha; PI3KCA, 22.2 6.6E+02 0.023 25.9 20.2 61 45-105 115-175 (373)
135 3vem_A Helicase protein MOM1; 21.9 3.6E+02 0.012 22.7 9.9 13 41-53 24-36 (115)
136 3tul_A Cell invasion protein S 21.6 4.2E+02 0.014 23.3 10.8 53 512-576 72-124 (158)
137 4e61_A Protein BIM1; EB1-like 21.2 3.6E+02 0.012 22.5 8.1 43 68-110 9-51 (106)
138 2xv5_A Lamin-A/C; structural p 21.1 2.9E+02 0.01 21.4 8.8 48 70-117 5-52 (74)
139 4fla_A Regulation of nuclear P 21.1 4.4E+02 0.015 23.4 12.2 51 210-260 88-138 (152)
140 3mdq_A Exopolyphosphatase; str 20.9 45 0.0016 33.9 2.6 54 623-681 89-145 (315)
141 1gk7_A Vimentin; intermediate 20.4 1.5E+02 0.0051 19.9 4.2 30 496-525 7-36 (39)
142 2lw1_A ABC transporter ATP-bin 20.1 3.3E+02 0.011 21.6 9.0 23 71-93 23-45 (89)
No 1
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=100.00 E-value=1.2e-39 Score=288.42 Aligned_cols=118 Identities=31% Similarity=0.637 Sum_probs=109.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceEEeccccccCCccceeEEEeecccCCCCCeeEEeecC
Q 004893 597 SGKITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEHQRANGIPVTHFTLQSIYAQGDDEKLEFEYES 676 (724)
Q Consensus 597 ~~~~~~l~~~~~~~~k~~~rlke~f~~k~~efr~a~~~l~Gy~i~~~~~~~~~g~~~~~~~l~s~y~~~~~~~l~f~~~~ 676 (724)
..++++|+.+|++++|+++||||||++||.+||+|||+||||+|+| .+|| +|||+||||++++|||+|++.+
T Consensus 3 ~~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav~~LlGykId~----~~~~----~~rl~S~Ya~~~~d~L~F~~~~ 74 (123)
T 4dzo_A 3 SKEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACYTLTGYQIDI----TTEN----QYRLTSLYAEHPGDCLIFKATS 74 (123)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEE----ETTT----EEEEEETTCSSTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEEE----ccCC----eEEEEEeecCCCCCeEEEEecC
Confidence 4689999999999999999999999999999999999999999999 6787 9999999999999999999863
Q ss_pred --Cc-eeeccCCCCChhhhHHHHHHHhhhcCCcchhhhhhhhhhhhccCCC
Q 004893 677 --SN-TNIMVNDYTSQPEISRQVDIFVRKMNSIPAFTANLTVESFNRRTLS 724 (724)
Q Consensus 677 --~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~fla~ltl~l~~~~t~~ 724 (724)
|+ |++++++|. .+|+++|.+||.+++|||||||||||+||+++||.
T Consensus 75 ~~g~~~~ll~t~f~--~~~~~~i~~~l~~~~siP~FLaalTLelfe~~T~~ 123 (123)
T 4dzo_A 75 PSGSKMQLLETEFS--HTVGELIEVHLRRQDSIPAFLSSLTLELFSRQTVA 123 (123)
T ss_dssp --CCCEEEECCTTG--GGCHHHHHHHTTSSCCHHHHHHHHHHHHHHHHC--
T ss_pred CCCceeeecCChhH--hHHHHHHHHHHHcCCCCchHhHHHHHHHHhcccCC
Confidence 54 999999886 78999999999999999999999999999999984
No 2
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=99.25 E-value=7e-12 Score=104.51 Aligned_cols=82 Identities=28% Similarity=0.387 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCcccchhhhccccccchH--HHHHHHHHHHHHHHHHHHH
Q 004893 501 SEKLNNEERRIKSLERENDRLRSEISLLESKLGH----GDFSSENTKVLRMVNTLAVDN--EAKQTIEALQTELQKTKEK 574 (724)
Q Consensus 501 ~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~~----~~~~~~~~ril~l~~n~~~~~--~~~~~l~~l~~E~~~L~~~ 574 (724)
++.+..++.+|+.|+.++..|+.++..|+.+|++ |+|++++|||+||++||++.+ .++.+++.|++||++|+.+
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~ 90 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGL 90 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999987 999999999999999999876 4578999999999999999
Q ss_pred HHHHHHhh
Q 004893 575 LQAVEELK 582 (724)
Q Consensus 575 l~~l~~~~ 582 (724)
++.|++++
T Consensus 91 v~~lEeg~ 98 (100)
T 1go4_E 91 LRAMERGG 98 (100)
T ss_dssp HTTCC---
T ss_pred HHHHhccC
Confidence 99887643
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.67 E-value=0.00045 Score=70.07 Aligned_cols=61 Identities=15% Similarity=0.180 Sum_probs=24.9
Q ss_pred chHHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 56 CTYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAA 116 (724)
Q Consensus 56 ~~~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~ 116 (724)
|-+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..
T Consensus 6 ~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (284)
T 1c1g_A 6 KKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKD 66 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444444443333333333333333333
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.56 E-value=0.00098 Score=67.49 Aligned_cols=12 Identities=17% Similarity=0.340 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 004893 332 QSMDQLEDELSS 343 (724)
Q Consensus 332 ~~~~~Le~el~~ 343 (724)
..+..+..++..
T Consensus 265 ~~~~~~~~~~~~ 276 (284)
T 1c1g_A 265 LKYKAISEELDH 276 (284)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.20 E-value=3.6e-06 Score=103.71 Aligned_cols=13 Identities=54% Similarity=0.787 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q 004893 559 QTIEALQTELQKT 571 (724)
Q Consensus 559 ~~l~~l~~E~~~L 571 (724)
.+++.|+..++++
T Consensus 1151 ~ele~L~~~Ieel 1163 (1184)
T 1i84_S 1151 EELEALKTELEDT 1163 (1184)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.08 E-value=0.1 Score=52.43 Aligned_cols=67 Identities=15% Similarity=0.117 Sum_probs=32.3
Q ss_pred hhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHH
Q 004893 60 CRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQE 126 (724)
Q Consensus 60 ~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~e 126 (724)
.+...+..+...+..+..++..++..+..++..+..+...+..+...+..++..+.....++...+.
T Consensus 15 ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~ 81 (256)
T 3na7_A 15 HLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQK 81 (256)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444455555555555555555555555555555555444444444444443333
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.64 E-value=0.35 Score=48.44 Aligned_cols=80 Identities=14% Similarity=0.124 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchhchHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004893 405 EAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFIEELESNLH 484 (724)
Q Consensus 405 e~~~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~~~~e~~~~~~~~~~~~~~~~~le~~l~~~~~~i~~Le~~l~ 484 (724)
.+..+...+..+...+.+++..+..+.......+..+.... ++.....+..++..++.++..++..+.
T Consensus 47 ~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~------------~~kE~~aL~kEie~~~~~i~~lE~eil 114 (256)
T 3na7_A 47 AILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK------------SERELRSLNIEEDIAKERSNQANREIE 114 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS------------SSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC------------CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555555555555554432 112345555666666666666666655
Q ss_pred HHHHHhHhHHHH
Q 004893 485 AQQEINSRQRDE 496 (724)
Q Consensus 485 ~~~~~~~~l~~e 496 (724)
.+......+...
T Consensus 115 e~~e~ie~~~~~ 126 (256)
T 3na7_A 115 NLQNEIKRKSEK 126 (256)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444433333333
No 8
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.63 E-value=0.21 Score=46.95 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=33.1
Q ss_pred CCCCCCCcccch-HHh----hHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHch
Q 004893 46 SSHQPSDHLLCT-YQC----RQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGR 120 (724)
Q Consensus 46 ~~~~~~~~~~~~-~~~----~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~ 120 (724)
+|++.+..--|. |+. ....+.++..++.+....-.+++.++ ..++..++.....++.++..+..++..++.+
T Consensus 2 ~~~f~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~EL---E~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K 78 (189)
T 2v71_A 2 AMDFSSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAEL---EAQLVQAEQRNRDLQADNQRLKYEVEALKEK 78 (189)
T ss_dssp --CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 333 33344455555555555444444432 2344444555555555555555555555444
No 9
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.47 E-value=0.41 Score=44.94 Aligned_cols=26 Identities=12% Similarity=0.203 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 231 SEMLKNQMKDLKEQLNECLNQKSEVE 256 (724)
Q Consensus 231 ~~~L~~el~el~~~l~e~~~~~~~Le 256 (724)
++.|+.++..++.....+...+.+|+
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLE 115 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELE 115 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444333333333333333
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.31 E-value=4.7 Score=53.87 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHch
Q 004893 67 DFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGR 120 (724)
Q Consensus 67 ~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~ 120 (724)
-+..-+.+...++......+..--.++.+...++..++.++...+.+++....+
T Consensus 1903 ~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~e 1956 (3245)
T 3vkg_A 1903 QVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQ 1956 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555555555555566666666666666666666655544
No 11
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=95.29 E-value=0.56 Score=39.94 Aligned_cols=80 Identities=13% Similarity=0.154 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 004893 328 REVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAA 407 (724)
Q Consensus 328 ~~le~~~~~Le~el~~w~~~~~~~~~~~~~~~l~~~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~~~~e~ek~~le~e~~ 407 (724)
.+|...+..|..+..+|+.++... ..+....+..|+.++..|......+...+..|+..+++++.........+.
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~-----~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLe 80 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQ-----YAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLE 80 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHH
Confidence 677888889999999999998753 223344677899999999999999999999999999988876554444455
Q ss_pred HHHHH
Q 004893 408 LVKEK 412 (724)
Q Consensus 408 ~l~~~ 412 (724)
++...
T Consensus 81 D~E~k 85 (111)
T 2v66_B 81 DFEQR 85 (111)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54433
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.18 E-value=1.9 Score=57.37 Aligned_cols=46 Identities=20% Similarity=0.222 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 004893 304 ELLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIR 349 (724)
Q Consensus 304 ellkee~~~lq~kl~~~E~~~~~~~~le~~~~~Le~el~~w~~~~~ 349 (724)
.++.++..++..+..+++.-+.++.+...++..|+.++......+.
T Consensus 1906 ~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~ 1951 (3245)
T 3vkg_A 1906 LLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELD 1951 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667778888888889999999999999999999888887766543
No 13
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.09 E-value=2 Score=39.35 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004893 148 ELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLS 185 (724)
Q Consensus 148 ~l~~~L~~e~~~~~~~e~~~~~l~~~l~~l~~el~e~~ 185 (724)
.+...|..+...+......+.++..++..+..++....
T Consensus 73 ~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k 110 (168)
T 3o0z_A 73 QLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLK 110 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555543
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.28 E-value=1.5 Score=52.90 Aligned_cols=25 Identities=12% Similarity=0.412 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 223 RAQNAEKESEMLKNQMKDLKEQLNE 247 (724)
Q Consensus 223 ~~~~~E~e~~~L~~el~el~~~l~e 247 (724)
.+..++++...|+.+++++...+.+
T Consensus 1024 kv~~L~~e~~~L~qq~~~l~~~~~~ 1048 (1080)
T 2dfs_A 1024 LVSELKEQNTLLKTEKEELNRRIHD 1048 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555543333
No 15
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=92.88 E-value=2.6 Score=45.39 Aligned_cols=18 Identities=11% Similarity=0.246 Sum_probs=0.0
Q ss_pred CCCcccCCCCCCCCCcce
Q 004893 16 GEPIIECPPTAGGSDRRL 33 (724)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~ 33 (724)
.+|....|||-+|++-|-
T Consensus 30 ~~~~~~~~~~~~~~~~~~ 47 (464)
T 1m1j_B 30 APTLRPVAPPISGTGYQP 47 (464)
T ss_dssp ------------------
T ss_pred CCCCCCCCCCcCCCCcCC
Confidence 344444566666756554
No 16
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=91.12 E-value=8.5 Score=34.76 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 004893 225 QNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSS 262 (724)
Q Consensus 225 ~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L 262 (724)
..++.....|+.++.+....++.....+.+|..-+..+
T Consensus 111 ~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m 148 (154)
T 2ocy_A 111 YAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSL 148 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555555555555555544444
No 17
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=90.99 E-value=9.2 Score=34.95 Aligned_cols=68 Identities=15% Similarity=0.102 Sum_probs=33.8
Q ss_pred hHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHH
Q 004893 61 RQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQL 128 (724)
Q Consensus 61 ~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~ 128 (724)
++.+..++...+..-......+.....++...+..++.....+++.+..++.....+..+...++..+
T Consensus 11 LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L 78 (168)
T 3o0z_A 11 LQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAIL 78 (168)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555554444444444444444555555555555555555555555555555554444444433
No 18
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=90.03 E-value=3 Score=37.17 Aligned_cols=68 Identities=18% Similarity=0.282 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004893 466 ESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLG 533 (724)
Q Consensus 466 e~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~ 533 (724)
-.++.+.+..++.|+.++..+......+..++..+..++..+..++..|..++..|..++..|+..+.
T Consensus 67 adEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 67 ADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666665555555555566566666666666777777777777777777766654
No 19
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=89.96 E-value=11 Score=34.16 Aligned_cols=46 Identities=13% Similarity=0.233 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q 004893 222 CRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEF 267 (724)
Q Consensus 222 ~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~~ 267 (724)
.+-..++.++..|...+.+.-...+.+.+.+..|++.+..|+..+.
T Consensus 70 qrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~ 115 (155)
T 2efr_A 70 QKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELY 115 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777777777777777777777777777777777765553
No 20
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=89.79 E-value=8.5 Score=32.68 Aligned_cols=65 Identities=12% Similarity=0.156 Sum_probs=35.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchhchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 004893 422 RIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDE 496 (724)
Q Consensus 422 rLek~~~~~~~er~~lr~~l~~~~~e~~~~~~~~~~~~~~~~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e 496 (724)
.|..+...+..+++.||..+....++. ...+..|+.++..++..-..|...+..+...++.+...
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~~~~e~----------~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~ 71 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEHQYAQS----------YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 71 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 344445556667777777776543221 13345566666666666666655555555555544433
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.18 E-value=5.9 Score=44.55 Aligned_cols=70 Identities=19% Similarity=0.211 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004893 464 ELESSLAKKEEFIEELESNLHAQQ-------EINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLG 533 (724)
Q Consensus 464 ~le~~l~~~~~~i~~Le~~l~~~~-------~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~ 533 (724)
.++..+...+...+.++..+.... .....++.+...+...+...+..+.++.++...++.++..|+.++.
T Consensus 506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 506 NLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444455555555544444333 3333444555566666777777888888888888888888888775
No 22
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=89.00 E-value=9.3 Score=32.01 Aligned_cols=16 Identities=44% Similarity=0.453 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 004893 161 RKAESAAASAEEKASL 176 (724)
Q Consensus 161 ~~~e~~~~~l~~~l~~ 176 (724)
..++.....+..++.-
T Consensus 82 ~~aE~ev~~L~Rriql 97 (101)
T 3u1c_A 82 AKAESEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 23
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=88.38 E-value=12 Score=32.42 Aligned_cols=36 Identities=6% Similarity=0.051 Sum_probs=12.6
Q ss_pred CCCCCcccchHHhhHhhHhHHHHHHHHHHHHHHHHH
Q 004893 48 HQPSDHLLCTYQCRQMVKSDFLDALTNVEKQVRDYQ 83 (724)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~qi~~le 83 (724)
|+...+|-+-|......+.+++.++..+...-..+.
T Consensus 5 ~~~~~~~~~~~~~ye~~I~~LR~qid~~~~e~a~l~ 40 (119)
T 3ol1_A 5 HHHHSHMSRLGDLYEEEMRELRRQVDQLTNDKARVE 40 (119)
T ss_dssp --------CCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444454444445555444444443333333
No 24
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=88.29 E-value=13 Score=32.70 Aligned_cols=47 Identities=23% Similarity=0.350 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHch
Q 004893 74 NVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGR 120 (724)
Q Consensus 74 ~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~ 120 (724)
.....+..+..++..++..+...+..+..+......+..+...+...
T Consensus 10 ~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~q 56 (129)
T 2fxo_A 10 EREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQ 56 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666666655555555444433
No 25
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=86.72 E-value=6.8 Score=31.79 Aligned_cols=74 Identities=12% Similarity=0.140 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHH-------HHHhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHH
Q 004893 366 ALQKEVIDSMMKLGEANAQLKQMEVALDA-------AQLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLR 438 (724)
Q Consensus 366 ~Lq~e~~~l~~~~~~~~~~~~~le~~~~~-------~e~ek~~le~e~~~l~~~~~~~~~~~~rLek~~~~~~~er~~lr 438 (724)
.|+..+..+..+.+.+..++.+++..++. --..++.++.++..++..++.+.-....|+.++..+..++..+|
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555555444433 11224667777888888888887777888888888888887776
Q ss_pred H
Q 004893 439 N 439 (724)
Q Consensus 439 ~ 439 (724)
+
T Consensus 84 k 84 (86)
T 3swk_A 84 K 84 (86)
T ss_dssp T
T ss_pred h
Confidence 4
No 26
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=86.70 E-value=12 Score=32.35 Aligned_cols=81 Identities=11% Similarity=0.137 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-------HhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHH
Q 004893 362 VKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQ-------LGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEER 434 (724)
Q Consensus 362 ~~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~~~~e-------~ek~~le~e~~~l~~~~~~~~~~~~rLek~~~~~~~er 434 (724)
..|..|+..+..+..+.+.+..++.+++..+++.. ..++.++.++..++..++........|+.++..+..++
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl 99 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777766666554421 11345566677777777776666667777777777777
Q ss_pred HHHHHHHH
Q 004893 435 DKLRNVVN 442 (724)
Q Consensus 435 ~~lr~~l~ 442 (724)
..+|+..+
T Consensus 100 ~FLKk~he 107 (119)
T 3ol1_A 100 AFLKKLHE 107 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776554
No 27
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=85.68 E-value=15 Score=30.75 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 004893 161 RKAESAAASAEEKAS 175 (724)
Q Consensus 161 ~~~e~~~~~l~~~l~ 175 (724)
..++.....+..++.
T Consensus 82 ~~AE~evasLnRriq 96 (101)
T 3u59_A 82 TDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 28
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=84.97 E-value=16 Score=30.64 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=23.0
Q ss_pred HHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 58 YQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSK 95 (724)
Q Consensus 58 ~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~ 95 (724)
-+...+++.+|...+..++..+......+..++..+..
T Consensus 19 ~~~~~~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q 56 (110)
T 2v4h_A 19 SHMASMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQ 56 (110)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566667666666666666666666666655543
No 29
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=84.37 E-value=17 Score=32.54 Aligned_cols=65 Identities=15% Similarity=0.092 Sum_probs=34.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHH
Q 004893 64 VKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQL 128 (724)
Q Consensus 64 ~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~ 128 (724)
.+..+..++..++..|..++..+......+..+..++..++-++..++.++..++.+-..+.+|+
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555555555555555555555555555444444444
No 30
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=83.31 E-value=13 Score=40.01 Aligned_cols=52 Identities=10% Similarity=0.013 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-------------HHHHHHHHHHHHHhh
Q 004893 152 KHRNELNLRRKAESAAASAEEKASLLEGKLTHLSDSI-------------EREKKRLNNEVTQLK 203 (724)
Q Consensus 152 ~L~~e~~~~~~~e~~~~~l~~~l~~l~~el~e~~~~~-------------e~e~~~L~~~l~~L~ 203 (724)
.+...+..+..|+..+..+..++..|+.++.-..... -..+..+++++.++.
T Consensus 125 kVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~ 189 (562)
T 3ghg_A 125 KVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVI 189 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHh
Confidence 3444444456666677777777777777776553211 245667777777754
No 31
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=83.08 E-value=9.1 Score=34.07 Aligned_cols=6 Identities=0% Similarity=0.191 Sum_probs=2.4
Q ss_pred eeeccC
Q 004893 33 LVIYED 38 (724)
Q Consensus 33 ~~~~~~ 38 (724)
+.||..
T Consensus 12 V~I~Gk 17 (138)
T 3hnw_A 12 VILGGK 17 (138)
T ss_dssp EEETTE
T ss_pred EEECCE
Confidence 334443
No 32
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=82.47 E-value=12 Score=33.53 Aligned_cols=63 Identities=19% Similarity=0.227 Sum_probs=44.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 460 TLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLR 522 (724)
Q Consensus 460 ~~~~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~ 522 (724)
..+..|..++..++..|..|+..+..-...+..++.++..++-+++.+..++..|+.++..|-
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777888887777776666777777777777777777777777766665553
No 33
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=81.94 E-value=14 Score=30.62 Aligned_cols=42 Identities=14% Similarity=0.260 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 76 EKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAA 117 (724)
Q Consensus 76 e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~ 117 (724)
+..+..++.+-..+-.++..++.+...+...|..++.+...+
T Consensus 10 ~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 10 QRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444433
No 34
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=80.32 E-value=24 Score=29.37 Aligned_cols=37 Identities=11% Similarity=0.206 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 82 YQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAK 118 (724)
Q Consensus 82 le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~ 118 (724)
++.++........+++.++..++.++..++.++..+.
T Consensus 28 ~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~ 64 (101)
T 3u59_A 28 AEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYS 64 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444444444444444333
No 35
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=79.70 E-value=35 Score=30.76 Aligned_cols=9 Identities=22% Similarity=0.597 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 004893 232 EMLKNQMKD 240 (724)
Q Consensus 232 ~~L~~el~e 240 (724)
..++.++++
T Consensus 82 ~~ie~ElEe 90 (154)
T 2ocy_A 82 DKLNKEVED 90 (154)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 36
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=79.66 E-value=21 Score=28.33 Aligned_cols=60 Identities=12% Similarity=0.211 Sum_probs=23.4
Q ss_pred hHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHch
Q 004893 61 RQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGR 120 (724)
Q Consensus 61 ~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~ 120 (724)
++..+...-+.+.-++-+|.+++.+-..+..+...+......+..++..+..+...+..+
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~R 70 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQER 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444444333333333333333333444444444333333333
No 37
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=77.43 E-value=25 Score=27.77 Aligned_cols=62 Identities=13% Similarity=0.277 Sum_probs=40.0
Q ss_pred HhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHch
Q 004893 59 QCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGR 120 (724)
Q Consensus 59 ~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~ 120 (724)
..+...-.++-.++..+.-.|.+++.+...+..++.....++..++..+..-+.++..+..+
T Consensus 15 ee~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 15 EEKQRKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444455777777777777777777777777777666666666666666555555554443
No 38
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=76.74 E-value=27 Score=27.82 Aligned_cols=53 Identities=13% Similarity=0.079 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHch
Q 004893 68 FLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGR 120 (724)
Q Consensus 68 ~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~ 120 (724)
+..+..........++..+..........+.++..++.++..++.++..+..+
T Consensus 11 lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~ 63 (81)
T 1ic2_A 11 LKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSES 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444444444444444444443
No 39
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=75.28 E-value=33 Score=28.23 Aligned_cols=12 Identities=8% Similarity=0.169 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 004893 430 VTEERDKLRNVV 441 (724)
Q Consensus 430 ~~~er~~lr~~l 441 (724)
+....+.|+.++
T Consensus 81 ~e~kn~~L~~qL 92 (97)
T 2eqb_B 81 IEILNKRLTEQL 92 (97)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333444444
No 40
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=75.22 E-value=31 Score=27.84 Aligned_cols=33 Identities=12% Similarity=0.289 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhh
Q 004893 233 MLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQ 265 (724)
Q Consensus 233 ~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e 265 (724)
..+..+..+++-++++.-.+.+|+.++..|..+
T Consensus 46 ~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eE 78 (86)
T 3swk_A 46 EAENTLQSFRQDVDNASLARLDLERKVESLQEE 78 (86)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444445555555544443
No 41
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=74.76 E-value=36 Score=28.36 Aligned_cols=28 Identities=14% Similarity=0.139 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 89 LNENFSKAEAERKKFRDQFLYAEQELAA 116 (724)
Q Consensus 89 l~~~l~~~e~~~~~lq~~l~~le~el~~ 116 (724)
......+++.++..++.++..++.++..
T Consensus 35 ~e~~~~~~E~Ei~sL~kk~~~lE~eld~ 62 (101)
T 3u1c_A 35 AEERSKQLEDDIVQLEKQLRVTEDSRDQ 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444443333333333
No 42
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=74.64 E-value=30 Score=27.46 Aligned_cols=71 Identities=15% Similarity=0.268 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004893 462 TKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKL 532 (724)
Q Consensus 462 ~~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l 532 (724)
+..|+..+...=..|.-|+-.+..++..+..+..+...+...-..+..++..|..+.......+..|=.++
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555555555555666666666665555555554444444455566666666666666555554444
No 43
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=74.02 E-value=75 Score=32.79 Aligned_cols=22 Identities=9% Similarity=-0.014 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004893 161 RKAESAAASAEEKASLLEGKLT 182 (724)
Q Consensus 161 ~~~e~~~~~l~~~l~~l~~el~ 182 (724)
..++..+..+..++..|+..++
T Consensus 137 r~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 137 NLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555553
No 44
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=72.24 E-value=56 Score=29.48 Aligned_cols=14 Identities=14% Similarity=0.385 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHhhh
Q 004893 191 EKKRLNNEVTQLKR 204 (724)
Q Consensus 191 e~~~L~~~l~~L~~ 204 (724)
.+..|++.+..+..
T Consensus 99 sv~kLEk~id~lEd 112 (155)
T 2efr_A 99 SVTKLEKSIDDLED 112 (155)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 45
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=71.51 E-value=54 Score=35.27 Aligned_cols=9 Identities=33% Similarity=0.807 Sum_probs=6.0
Q ss_pred ccchHHhhH
Q 004893 54 LLCTYQCRQ 62 (724)
Q Consensus 54 ~~~~~~~~~ 62 (724)
+.|.==|+.
T Consensus 43 vkCPSGCrL 51 (562)
T 3ghg_A 43 YKCPSGCRM 51 (562)
T ss_dssp TEEECHHHH
T ss_pred CCCCcccch
Confidence 578877753
No 46
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=67.64 E-value=10 Score=32.78 Aligned_cols=12 Identities=8% Similarity=0.069 Sum_probs=4.8
Q ss_pred HHHHHHHHhchh
Q 004893 252 KSEVEKKLSSST 263 (724)
Q Consensus 252 ~~~Le~~~~~L~ 263 (724)
+..|..++..|+
T Consensus 42 v~ql~~~i~~Le 53 (120)
T 3i00_A 42 VLQLKGHVSELE 53 (120)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 47
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=67.00 E-value=58 Score=27.59 Aligned_cols=59 Identities=10% Similarity=0.049 Sum_probs=28.6
Q ss_pred hHHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 57 TYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAK 118 (724)
Q Consensus 57 ~~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~ 118 (724)
.|..++.....+..++.+....-.+++..+.. .......++..|...+...+..+..+.
T Consensus 7 ~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~---k~E~~k~qV~~L~~~~q~sE~~L~~Lq 65 (112)
T 1x79_B 7 QVKKLQLMLRQANDQLEKTMKDKQELEDFIKQ---SSEDSSHQISALVLRAQASEILLEELQ 65 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666666666666666555555555544222 222224444444444444444444443
No 48
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=65.16 E-value=9.7 Score=39.07 Aligned_cols=76 Identities=17% Similarity=0.241 Sum_probs=16.8
Q ss_pred HHHHHHhcceEEeccccccCCccceeEEEeecccCCCCCeeEE--eec-CCceeeccCCCCChhhhHHHHHHHhhhcCCc
Q 004893 630 RACCELFGYKIVMDEHQRANGIPVTHFTLQSIYAQGDDEKLEF--EYE-SSNTNIMVNDYTSQPEISRQVDIFVRKMNSI 706 (724)
Q Consensus 630 ~a~~~l~Gy~i~~~~~~~~~g~~~~~~~l~s~y~~~~~~~l~f--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 706 (724)
..+..+||++|+-. .++|+ +|..+.+=..+|+.-+.| ++. ++...++...+.= +.+.. +-.-|+..+.+
T Consensus 227 ~~~~~~LGl~ie~~---~~d~l---kf~F~~id~~d~~re~~f~l~~~~~~~Y~v~~c~P~l-~~~~~-l~~~lN~~~d~ 298 (315)
T 2ve7_A 227 DLYKDRLGLEIRKI---YGEKL---QFIFTNIDPKNPESPFMFSLHLNEARDYEVSDSAPHL-EGLAE-FQENVRKTNNF 298 (315)
T ss_dssp HHHHHHSCCCCC----------------CCCC---CCCCCC---------------------------------------
T ss_pred HHHHHHcceEEEec---cCCeE---EEEEEecCCCCCCceEEEEEEecCCCceEEEecCCCC-ccHHH-HHHHHhccCCH
Confidence 56668999999863 22443 677777766666665455 445 5667777554321 12333 33345677889
Q ss_pred chhhhhh
Q 004893 707 PAFTANL 713 (724)
Q Consensus 707 p~fla~l 713 (724)
++||..+
T Consensus 299 ~~Fl~~~ 305 (315)
T 2ve7_A 299 SAFLANV 305 (315)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 9998765
No 49
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=64.24 E-value=22 Score=27.51 Aligned_cols=45 Identities=9% Similarity=0.183 Sum_probs=21.2
Q ss_pred hHHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 57 TYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFL 108 (724)
Q Consensus 57 ~~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~ 108 (724)
|++.++..+.....++.. .+..+..+...+.+.+..+..|+.++.
T Consensus 20 ti~eLq~~L~~K~eELr~-------kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQ-------RDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555444444444444 444444444444444444445544443
No 50
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=63.52 E-value=21 Score=31.33 Aligned_cols=13 Identities=23% Similarity=0.123 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 004893 312 EEKSRRERVEQEL 324 (724)
Q Consensus 312 ~lq~kl~~~E~~~ 324 (724)
+.+.++..++...
T Consensus 19 ~~~~~~~~le~l~ 31 (135)
T 2e7s_A 19 SQKAAIENYNQLK 31 (135)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 51
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=62.89 E-value=32 Score=26.67 Aligned_cols=46 Identities=11% Similarity=0.121 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 004893 218 EKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSST 263 (724)
Q Consensus 218 e~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~ 263 (724)
.+++..+.+...++......+.++...+++.+..+..|...+.++.
T Consensus 22 ~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 22 RDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444445556666667777777777777777777777766654
No 52
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=62.85 E-value=60 Score=26.28 Aligned_cols=72 Identities=21% Similarity=0.240 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004893 462 TKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLG 533 (724)
Q Consensus 462 ~~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~ 533 (724)
+..++..+..++..+...+.....+......+..+...|..++.++...+..|...+..|...+..++..+.
T Consensus 16 m~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 16 MKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444444444444454555555555666666667777777777777777766654
No 53
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=62.78 E-value=68 Score=26.91 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 152 KHRNELNLRRKAESAAASAEEKASLLEGKL 181 (724)
Q Consensus 152 ~L~~e~~~~~~~e~~~~~l~~~l~~l~~el 181 (724)
....+...+..+..+...+..++..+..++
T Consensus 77 DF~aERadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 77 DFQAERHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 344555566566666666655555555443
No 54
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=62.73 E-value=30 Score=23.51 Aligned_cols=33 Identities=30% Similarity=0.256 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 004893 461 LTKELESSLAKKEEFIEELESNLHAQQEINSRQ 493 (724)
Q Consensus 461 ~~~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l 493 (724)
++.+||....++...+.+|+..++.+...+..+
T Consensus 4 Yl~eLE~r~k~le~~naeLEervstLq~EN~mL 36 (42)
T 2oqq_A 4 YLSELENRVKDLENKNSELEERLSTLQNENQML 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 455666666666666666666666655544443
No 55
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=61.29 E-value=83 Score=27.41 Aligned_cols=9 Identities=22% Similarity=0.338 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 004893 188 IEREKKRLN 196 (724)
Q Consensus 188 ~e~e~~~L~ 196 (724)
++.+++..+
T Consensus 117 Ld~EIatYR 125 (131)
T 3tnu_A 117 LEQEIATYR 125 (131)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444433
No 56
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=60.09 E-value=63 Score=26.05 Aligned_cols=65 Identities=15% Similarity=0.306 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 507 EERRIKSLERENDRLRSEISLLESKLGHGDFSSENTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQAVEE 580 (724)
Q Consensus 507 l~~~i~~Le~e~~~l~~e~~~Le~~l~~~~~~~~~~ril~l~~n~~~~~~~~~~l~~l~~E~~~L~~~l~~l~~ 580 (724)
.++++..|+..+..+..++..|+..+...+| +.+++.--......+..+..+++.+..+=..|++
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~ladp~~---------y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~ 84 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVADASF---------FSQPHEQTQKVLADMAAAEQELEQAFERWEYLEA 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTG---------GGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccc---------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888999999999999999875332 1122221112356777888888877655554443
No 57
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=59.48 E-value=80 Score=26.67 Aligned_cols=63 Identities=17% Similarity=0.333 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004893 469 LAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLGH 534 (724)
Q Consensus 469 l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~~ 534 (724)
...+...+..|...|...+.. -+..+..+...|..+..++.....+.+.++..+..+...+..
T Consensus 48 AaTCNqTV~tL~~SL~~ekaq---~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 48 AATANHTVMALMASLDAEKAQ---GQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 334444444444444332211 123344445555556666667777777777777777666653
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=59.39 E-value=1.9e+02 Score=30.99 Aligned_cols=37 Identities=11% Similarity=0.077 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 217 LEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKS 253 (724)
Q Consensus 217 le~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~ 253 (724)
.+..+..++.++++...++..+.++...+.++.....
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
T 3oja_A 437 WDMYQHKETQLAEENARLKKLNGEADLALASANATLQ 473 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHH
Confidence 3333333333444444444444444444444333333
No 59
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=58.79 E-value=1.7e+02 Score=30.20 Aligned_cols=8 Identities=38% Similarity=0.895 Sum_probs=4.1
Q ss_pred ccchHHhh
Q 004893 54 LLCTYQCR 61 (724)
Q Consensus 54 ~~~~~~~~ 61 (724)
+.|.==|+
T Consensus 46 ~kCPsGCr 53 (390)
T 1deq_A 46 TKCPSGCR 53 (390)
T ss_pred CCCCccch
Confidence 35655553
No 60
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=57.49 E-value=93 Score=26.75 Aligned_cols=9 Identities=11% Similarity=0.272 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 004893 233 MLKNQMKDL 241 (724)
Q Consensus 233 ~L~~el~el 241 (724)
.|+.++...
T Consensus 51 ~Le~eL~e~ 59 (120)
T 3i00_A 51 ELEADLAEQ 59 (120)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 61
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=56.57 E-value=96 Score=26.64 Aligned_cols=58 Identities=14% Similarity=0.301 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHH
Q 004893 66 SDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGV 123 (724)
Q Consensus 66 ~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~ 123 (724)
.++...+....+++.+.+.++.-.-.=+.+-...+..++.+-.-..+++..+..+...
T Consensus 14 a~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~ 71 (167)
T 4gkw_A 14 ADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGT 71 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHH
Confidence 4555555555555555555554444444444445555555555555555555544333
No 62
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=55.80 E-value=74 Score=25.11 Aligned_cols=31 Identities=10% Similarity=0.114 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 151 AKHRNELNLRRKAESAAASAEEKASLLEGKL 181 (724)
Q Consensus 151 ~~L~~e~~~~~~~e~~~~~l~~~l~~l~~el 181 (724)
..|+.++..++.+..++.........++.+|
T Consensus 17 SALeaEIqAKQ~i~EELs~vr~~ni~~eskL 47 (81)
T 1wt6_A 17 EALEEEVLTRQSLSREMEAIRTDNQNFASQL 47 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444333333333333333333333
No 63
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=54.98 E-value=76 Score=24.99 Aligned_cols=58 Identities=17% Similarity=0.262 Sum_probs=38.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Q 004893 374 SMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFK 445 (724)
Q Consensus 374 l~~~~~~~~~~~~~le~~~~~~e~ek~~le~e~~~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~~~ 445 (724)
+.+.++..++++..+..+-++|...++. +...+.+|++....+++.+..++....++.
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~K--------------L~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQK--------------LEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888876666555543 334456666666666666666666665544
No 64
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=54.23 E-value=62 Score=23.77 Aligned_cols=50 Identities=8% Similarity=0.173 Sum_probs=26.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 64 VKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQE 113 (724)
Q Consensus 64 ~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~e 113 (724)
.+..+...+......+......+..++..+..+...++...+.|..+...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 6 TKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555544443
No 65
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=54.06 E-value=1.1e+02 Score=26.37 Aligned_cols=49 Identities=20% Similarity=0.180 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 004893 271 DSNILVKHLQEEIRNYEAE-VREARKLKASYENTELLKEKLLEEKSRRER 319 (724)
Q Consensus 271 e~~~~~k~L~~ql~~le~~-~~El~~Lr~~~~~~ellkee~~~lq~kl~~ 319 (724)
+.+.++..|+.-+--+... .+|--++.....+.+-|+-++...+.++..
T Consensus 109 EKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~m 158 (167)
T 4gkw_A 109 EKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAH 158 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHH
Confidence 3344444444443333222 222223444445555555555555544443
No 66
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=53.75 E-value=80 Score=24.87 Aligned_cols=60 Identities=15% Similarity=0.271 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004893 473 EEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKL 532 (724)
Q Consensus 473 ~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l 532 (724)
+..+.....++.+++.+...|..-...+..-+..+.++...++..++.++.....|+..+
T Consensus 17 ~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l 76 (78)
T 3iv1_A 17 KEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSAL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444455555555555444445555566667777777777777777766665543
No 67
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=52.14 E-value=92 Score=25.13 Aligned_cols=46 Identities=15% Similarity=0.323 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 004893 74 NVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKG 119 (724)
Q Consensus 74 ~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~ 119 (724)
..+.++..++.++..++..+.+.+..+..+......+..+...+..
T Consensus 11 ~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ 56 (89)
T 3bas_A 11 RQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFG 56 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666666666666655555555444443
No 68
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=51.85 E-value=97 Score=25.31 Aligned_cols=50 Identities=16% Similarity=0.210 Sum_probs=32.9
Q ss_pred CCCCCCcccchHHhhH------hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 47 SHQPSDHLLCTYQCRQ------MVKSDFLDALTNVEKQVRDYQSKLEELNENFSKA 96 (724)
Q Consensus 47 ~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~ 96 (724)
..+...++-.+|...+ |+|.+|-.+.-.++..+..++.+-..++..-...
T Consensus 8 eeFl~KdFSe~YE~~h~ErL~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~~~ 63 (104)
T 3s9g_A 8 SEFLQRDFSETYERYHTESLQNMSKQELIKEYLELEKSLSRMEDENNRLRLESKRL 63 (104)
T ss_dssp ------CCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3445566667776654 7899999999998888888877776666654333
No 69
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=50.95 E-value=86 Score=24.41 Aligned_cols=42 Identities=12% Similarity=0.187 Sum_probs=18.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004893 491 SRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKL 532 (724)
Q Consensus 491 ~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l 532 (724)
+.+...++.++.....++.++..+..-+..+...+..++.++
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555555555555555555555555544
No 70
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=50.42 E-value=2.5e+02 Score=29.67 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 004893 509 RRIKSLERENDRLRSEISLLESKLG 533 (724)
Q Consensus 509 ~~i~~Le~e~~~l~~e~~~Le~~l~ 533 (724)
..|..|..-++.+..++..||..|.
T Consensus 132 ~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 132 NRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555554
No 71
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=49.98 E-value=47 Score=26.21 Aligned_cols=50 Identities=22% Similarity=0.173 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 472 KEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLL 528 (724)
Q Consensus 472 ~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~L 528 (724)
+..+|.+|+..+.....++. .||..+...++.|..|...+..+...+..+
T Consensus 12 le~Ri~~LE~klAfqE~tIe-------eLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALT-------ELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666554444333 233334444444555555444444444333
No 72
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=49.35 E-value=95 Score=24.49 Aligned_cols=21 Identities=10% Similarity=-0.076 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004893 88 ELNENFSKAEAERKKFRDQFL 108 (724)
Q Consensus 88 ~l~~~l~~~e~~~~~lq~~l~ 108 (724)
.++.+..........++..+.
T Consensus 10 ~lk~e~d~a~~~~~~~e~~l~ 30 (81)
T 1ic2_A 10 MLKLDKENALDRAEQAEADKK 30 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=48.44 E-value=1.9e+02 Score=31.07 Aligned_cols=17 Identities=12% Similarity=0.003 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004893 98 AERKKFRDQFLYAEQEL 114 (724)
Q Consensus 98 ~~~~~lq~~l~~le~el 114 (724)
..+...+.........+
T Consensus 374 ~~~~~~~~~~~~~~~~~ 390 (487)
T 3oja_A 374 EQVSNGRRAHAELDGTL 390 (487)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhH
Confidence 33333333333333333
No 74
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=47.95 E-value=46 Score=22.70 Aligned_cols=34 Identities=12% Similarity=0.391 Sum_probs=21.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 65 KSDFLDALTNVEKQVRDYQSKLEELNENFSKAEA 98 (724)
Q Consensus 65 ~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~ 98 (724)
+.+|-+.+....++|...+.++..++..+..++.
T Consensus 4 k~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 4 KEELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777666666666666666666655543
No 75
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=47.06 E-value=1.2e+02 Score=24.80 Aligned_cols=30 Identities=23% Similarity=0.228 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 004893 472 KEEFIEELESNLHAQQEINSRQRDEIKSLS 501 (724)
Q Consensus 472 ~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~ 501 (724)
|...|.+|..++..+...+.++..+++.+.
T Consensus 54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~ 83 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTNDKARVEVERDNLA 83 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555544444444444444333
No 76
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=46.83 E-value=1.1e+02 Score=24.49 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHch
Q 004893 97 EAERKKFRDQFLYAEQELAAAKGR 120 (724)
Q Consensus 97 e~~~~~lq~~l~~le~el~~~~~~ 120 (724)
..++..++..+..++.++..++.+
T Consensus 27 ~~~l~~~q~~i~~lE~el~~~r~e 50 (86)
T 1x8y_A 27 ARERDTSRRLLAEKEREMAEMRAR 50 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555544
No 77
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=46.00 E-value=2.9e+02 Score=29.18 Aligned_cols=24 Identities=8% Similarity=0.026 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 161 RKAESAAASAEEKASLLEGKLTHL 184 (724)
Q Consensus 161 ~~~e~~~~~l~~~l~~l~~el~e~ 184 (724)
..+...+..+..++..|+..+...
T Consensus 135 rvLq~~l~~q~skIQRLE~dI~~q 158 (491)
T 1m1j_A 135 KALQNSIQEQVVEMKRLEVDIDIK 158 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555443
No 78
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=45.32 E-value=1.3e+02 Score=24.95 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 557 AKQTIEALQTELQKTKEKLQAVEE 580 (724)
Q Consensus 557 ~~~~l~~l~~E~~~L~~~l~~l~~ 580 (724)
.+..++.|+.|+..|+.++..|+-
T Consensus 17 lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 17 LRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378899999999999999887664
No 79
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=43.07 E-value=1.2e+02 Score=23.88 Aligned_cols=34 Identities=21% Similarity=0.551 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 004893 316 RRERVEQELAKLREVQQSMDQLEDELSSWKFLIR 349 (724)
Q Consensus 316 kl~~~E~~~~~~~~le~~~~~Le~el~~w~~~~~ 349 (724)
+....|+....+..|...+..++++..++...+.
T Consensus 17 ~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLK 50 (81)
T 3qh9_A 17 KQRKAEELLQELRHLKIKVEELENERNQYEWKLK 50 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455667777778888888888888887776643
No 80
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=42.55 E-value=1.4e+02 Score=24.50 Aligned_cols=53 Identities=13% Similarity=0.277 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 66 SDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAK 118 (724)
Q Consensus 66 ~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~ 118 (724)
..++..+..++.++..++.++..+...+..-...+.........++.+++.+.
T Consensus 8 e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555555554444444444444444444444443
No 81
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=41.86 E-value=3.4e+02 Score=28.77 Aligned_cols=23 Identities=17% Similarity=0.388 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004893 223 RAQNAEKESEMLKNQMKDLKEQL 245 (724)
Q Consensus 223 ~~~~~E~e~~~L~~el~el~~~l 245 (724)
+++++|.++..+..+|+++..++
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~ 466 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEV 466 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555554444444
No 82
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=41.49 E-value=1.4e+02 Score=24.31 Aligned_cols=47 Identities=32% Similarity=0.362 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 479 LESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEI 525 (724)
Q Consensus 479 Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~ 525 (724)
|+..++.+...+.+++..-.....++..+..++..|..++..|..+.
T Consensus 42 LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~ 88 (104)
T 3s9g_A 42 LEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTEN 88 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444433333333445555555555655555555443
No 83
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=40.83 E-value=1.3e+02 Score=23.69 Aligned_cols=15 Identities=20% Similarity=0.279 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 004893 101 KKFRDQFLYAEQELA 115 (724)
Q Consensus 101 ~~lq~~l~~le~el~ 115 (724)
..|..++..++..++
T Consensus 23 ~~Le~~v~~le~~Le 37 (79)
T 3cvf_A 23 AELEHQLRAMERSLE 37 (79)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 333333333333333
No 84
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=40.49 E-value=2.3e+02 Score=27.23 Aligned_cols=65 Identities=9% Similarity=0.086 Sum_probs=31.7
Q ss_pred CCCCCCCCcccchHHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHH
Q 004893 45 ESSHQPSDHLLCTYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVL 124 (724)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l 124 (724)
-++|+.++.+.-+|-- ..+......+-.++.-+...+.-...+|.++..+++.+......+
T Consensus 136 lp~gi~~e~I~~SYSl-------------------~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~v 196 (242)
T 3uux_B 136 IPPGVETAAISSSYSP-------------------SALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKL 196 (242)
T ss_dssp ---CCCCCGGGGSCCS-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHhcccccH-------------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888731 122333333344444445555555555555555555555443333
Q ss_pred HHHH
Q 004893 125 QEQL 128 (724)
Q Consensus 125 ~er~ 128 (724)
-+|+
T Consensus 197 l~RL 200 (242)
T 3uux_B 197 LGKI 200 (242)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 85
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=40.49 E-value=1.3e+02 Score=23.66 Aligned_cols=43 Identities=21% Similarity=0.316 Sum_probs=27.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 004893 460 TLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSE 502 (724)
Q Consensus 460 ~~~~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~ 502 (724)
..++.++..-..++.+|..|+..+.+....-..++.++..+.+
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e 55 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQ 55 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666777777777777777665555555556555443
No 86
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=39.20 E-value=12 Score=22.42 Aligned_cols=10 Identities=60% Similarity=1.165 Sum_probs=8.2
Q ss_pred CCCCCCCCCc
Q 004893 5 TPPPKRPRDA 14 (724)
Q Consensus 5 ~~~~~~~~~~ 14 (724)
.|+|||||+.
T Consensus 1 ~ptpKrpRgR 10 (26)
T 2ezd_A 1 VPTPKRPRGR 10 (26)
T ss_dssp CCSCCCCSSC
T ss_pred CCCCcCCCCC
Confidence 3889999976
No 87
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=38.82 E-value=3e+02 Score=30.53 Aligned_cols=136 Identities=9% Similarity=0.119 Sum_probs=0.0
Q ss_pred CCcccchHHhhH-------hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHH
Q 004893 51 SDHLLCTYQCRQ-------MVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGV 123 (724)
Q Consensus 51 ~~~~~~~~~~~~-------~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~ 123 (724)
++.++..|...- .|..+|.......+..|-.....+.....++..-....+.++.+...+++.....+.....
T Consensus 440 ~~~~~~~Y~~~~~kg~~~~~vl~~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~ 519 (592)
T 1f5n_A 440 LQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQ 519 (592)
T ss_dssp HHHHHHHHHHSSCCCTTHHHHHHHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 004893 124 LQEQLLKEVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLSDSIEREKKRLNNEVTQLK 203 (724)
Q Consensus 124 l~er~~~~~~~~~e~lk~~l~~~~~l~~~L~~e~~~~~~~e~~~~~l~~~l~~l~~el~e~~~~~e~e~~~L~~~l~~L~ 203 (724)
.+.....++....++++.+...+-...+..-+ ..+..+-.-+.+....+...|..++..|+
T Consensus 520 ~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~-------------------~~~~~~~~~~~~g~~~~~~~~~~ei~~l~ 580 (592)
T 1f5n_A 520 KERSYQEHLKQLTEKMENDRVQLLKEQERTLA-------------------LKLQEQEQLLKEGFQKESRIMKNEIQDLQ 580 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hH
Q 004893 204 RE 205 (724)
Q Consensus 204 ~e 205 (724)
..
T Consensus 581 ~~ 582 (592)
T 1f5n_A 581 TK 582 (592)
T ss_dssp HH
T ss_pred Hh
No 88
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=38.54 E-value=1.6e+02 Score=23.97 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 153 HRNELNLRRKAESAAASAEEKASLLEGK 180 (724)
Q Consensus 153 L~~e~~~~~~~e~~~~~l~~~l~~l~~e 180 (724)
...+...+..+..+...+...+..+...
T Consensus 56 F~aERadREkl~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 56 FQAERHAREKLVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 89
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=37.80 E-value=93 Score=24.48 Aligned_cols=47 Identities=21% Similarity=0.157 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHH
Q 004893 82 YQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQL 128 (724)
Q Consensus 82 le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~ 128 (724)
++..+..+..++.-.+..++.|++.+..-...+..+..++..+.+++
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555555555555555555555544444443
No 90
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=37.46 E-value=1.4e+02 Score=23.15 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 004893 401 SAETEAALVKEKEEVSKSEVKRIESMLSVVTEE 433 (724)
Q Consensus 401 ~le~e~~~l~~~~~~~~~~~~rLek~~~~~~~e 433 (724)
.+..+.+.++.++........+++.++.+++.+
T Consensus 41 ELt~E~e~l~~El~s~~~~~~r~~~ri~elEeE 73 (77)
T 2w83_C 41 ELTCEKDVLQGELEAVKQAKLKLEEKNRELEEE 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455556666666666777777776666654
No 91
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=37.38 E-value=1.6e+02 Score=23.51 Aligned_cols=40 Identities=3% Similarity=0.091 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 492 RQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESK 531 (724)
Q Consensus 492 ~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~ 531 (724)
.+...+..+..++..++..++.+.-++..+...-..+-..
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d 63 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444333333
No 92
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=36.60 E-value=3e+02 Score=26.50 Aligned_cols=31 Identities=13% Similarity=0.271 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 83 QSKLEELNENFSKAEAERKKFRDQFLYAEQE 113 (724)
Q Consensus 83 e~~l~~l~~~l~~~e~~~~~lq~~l~~le~e 113 (724)
..++.++..++..+..-+..+-+++..+++.
T Consensus 176 ~sEI~EID~KI~~L~~mR~~vl~RLA~lEqd 206 (242)
T 3uux_B 176 LSEIRDIEVEVENLRQKKEKLLGKIANIEQN 206 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333333334433333333344444433333
No 93
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=36.29 E-value=1.7e+02 Score=23.75 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=16.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 64 VKSDFLDALTNVEKQVRDYQSKLEELNENFSKA 96 (724)
Q Consensus 64 ~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~ 96 (724)
++..+...+..++..+...+..+..++..+...
T Consensus 3 ~~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~ 35 (94)
T 3jsv_C 3 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQH 35 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344455555555555555555555555544333
No 94
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=36.10 E-value=1.7e+02 Score=23.71 Aligned_cols=13 Identities=0% Similarity=0.015 Sum_probs=4.8
Q ss_pred HHHHHHHHHHhHH
Q 004893 406 AALVKEKEEVSKS 418 (724)
Q Consensus 406 ~~~l~~~~~~~~~ 418 (724)
+..++..++.+..
T Consensus 58 i~~Lr~~i~~~~~ 70 (93)
T 3s4r_A 58 MRELRRQVDQLTN 70 (93)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 95
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=35.51 E-value=1.5e+02 Score=22.88 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 004893 461 LTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLS 501 (724)
Q Consensus 461 ~~~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~ 501 (724)
.++.++..-..++.+|..|+..+......-..++.++..+.
T Consensus 8 kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~ 48 (72)
T 3cve_A 8 KLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLL 48 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666666666655444444445554443
No 96
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=34.85 E-value=54 Score=36.54 Aligned_cols=15 Identities=7% Similarity=0.193 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHH
Q 004893 273 NILVKHLQEEIRNYE 287 (724)
Q Consensus 273 ~~~~k~L~~ql~~le 287 (724)
..-++.+++++..|.
T Consensus 510 ~ekn~~lq~qL~~L~ 524 (575)
T 2i1j_A 510 AERNERLHNQLKALK 524 (575)
T ss_dssp HHHCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHH
Confidence 334556666665555
No 97
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=34.28 E-value=2e+02 Score=23.92 Aligned_cols=81 Identities=16% Similarity=0.194 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh---------------hhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 004893 363 KFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGK---------------QSAETEAALVKEKEEVSKSEVKRIESML 427 (724)
Q Consensus 363 ~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~~~~e~ek---------------~~le~e~~~l~~~~~~~~~~~~rLek~~ 427 (724)
.+..++.+...+..++..+...+..++.++.++..-- .....-...+....+.+...+.+|+.+.
T Consensus 14 ~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~ 93 (117)
T 2zqm_A 14 QLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQE 93 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666677777777776666666665544210 0112223344444555566666666666
Q ss_pred HhHHHHHHHHHHHHHh
Q 004893 428 SVVTEERDKLRNVVNE 443 (724)
Q Consensus 428 ~~~~~er~~lr~~l~~ 443 (724)
..+......++..+..
T Consensus 94 ~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 94 KKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666655543
No 98
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=33.46 E-value=75 Score=19.49 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004893 558 KQTIEALQTELQKTKEKLQAVEE 580 (724)
Q Consensus 558 ~~~l~~l~~E~~~L~~~l~~l~~ 580 (724)
++++.+|+.|+..|+-.++.+..
T Consensus 8 kqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 8 KQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 66777777787777777766543
No 99
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=33.25 E-value=2.5e+02 Score=25.97 Aligned_cols=46 Identities=13% Similarity=0.154 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 69 LDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQEL 114 (724)
Q Consensus 69 ~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el 114 (724)
+.++.....-|..+..+...+..++...+.+++.++.++..+....
T Consensus 12 q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 12 KQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3334444444444555555555555444444444444444444333
No 100
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=33.14 E-value=79 Score=20.57 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 004893 508 ERRIKSLERENDRLRSEISLLESKL 532 (724)
Q Consensus 508 ~~~i~~Le~e~~~l~~e~~~Le~~l 532 (724)
++++.....+++.++.++..|+.++
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHH
Confidence 4555556666666666666666554
No 101
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=32.75 E-value=66 Score=19.90 Aligned_cols=28 Identities=14% Similarity=0.348 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 596 ISGKITQLKEQIATLEKREERYKTVFAD 623 (724)
Q Consensus 596 ~~~~~~~l~~~~~~~~k~~~rlke~f~~ 623 (724)
++.++..|..-+..+.+|..||.+....
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556777888888899999999876543
No 102
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=32.36 E-value=2.3e+02 Score=23.94 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004893 558 KQTIEALQTELQKTKEKLQ 576 (724)
Q Consensus 558 ~~~l~~l~~E~~~L~~~l~ 576 (724)
..+++.|+++++.|..++.
T Consensus 91 ~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 91 SAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhchhhhhHhh
Confidence 4567778888887777665
No 103
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=32.35 E-value=2.1e+02 Score=23.44 Aligned_cols=80 Identities=16% Similarity=0.180 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh---------------hhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 004893 362 VKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGK---------------QSAETEAALVKEKEEVSKSEVKRIESM 426 (724)
Q Consensus 362 ~~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~~~~e~ek---------------~~le~e~~~l~~~~~~~~~~~~rLek~ 426 (724)
..+..++.+...+..++..+..++...+.+..++..-- +....-...+....+.+...+..++.+
T Consensus 8 ~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~ 87 (107)
T 1fxk_A 8 AQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQ 87 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777777777777777776666544320 011222233444455555666666666
Q ss_pred HHhHHHHHHHHHHHH
Q 004893 427 LSVVTEERDKLRNVV 441 (724)
Q Consensus 427 ~~~~~~er~~lr~~l 441 (724)
...+......++..+
T Consensus 88 ~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 88 EERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666665554
No 104
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=32.12 E-value=2.2e+02 Score=23.61 Aligned_cols=66 Identities=14% Similarity=0.201 Sum_probs=43.2
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHH
Q 004893 62 QMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQ 127 (724)
Q Consensus 62 ~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er 127 (724)
+..+.......+.+..+...+-+++..++..+...+.....++.++.....+++..+-....++..
T Consensus 8 EEKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~ 73 (103)
T 4h22_A 8 EEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQ 73 (103)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666666777777777777777777777777777777766666655554444443
No 105
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=30.56 E-value=2.2e+02 Score=23.22 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHch
Q 004893 97 EAERKKFRDQFLYAEQELAAAKGR 120 (724)
Q Consensus 97 e~~~~~lq~~l~~le~el~~~~~~ 120 (724)
..++..++..+..++.++..+..+
T Consensus 36 ~~e~~~~q~~i~~lE~eL~~~r~e 59 (95)
T 3mov_A 36 AKEKDNSRRMLTDKEREMAEIRDQ 59 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555544
No 106
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=30.34 E-value=5e+02 Score=27.24 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004893 165 SAAASAEEKASLLEGKLTHL 184 (724)
Q Consensus 165 ~~~~~l~~~l~~l~~el~e~ 184 (724)
..+..+..++..+...+..+
T Consensus 112 ~~~~~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 112 DMHIMNSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 33334444444444444443
No 107
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=30.10 E-value=2.1e+02 Score=22.70 Aligned_cols=40 Identities=20% Similarity=0.365 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchH
Q 004893 79 VRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGRE 121 (724)
Q Consensus 79 i~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~ 121 (724)
...++..+....... ..++..++..+..++.++..++.+.
T Consensus 10 ~~sLE~~l~e~e~~~---~~~~~~~q~~i~~lE~eL~~~r~e~ 49 (84)
T 1gk4_A 10 NESLERQMREMEENF---AVEAANYQDTIGRLQDEIQNMKEEM 49 (84)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444443333 3445566666666666666655553
No 108
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=29.58 E-value=1.6e+02 Score=21.39 Aligned_cols=15 Identities=13% Similarity=0.067 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 004893 101 KKFRDQFLYAEQELA 115 (724)
Q Consensus 101 ~~lq~~l~~le~el~ 115 (724)
..+...+..+...+.
T Consensus 29 ~~~k~~~~~~~~~l~ 43 (60)
T 3htk_A 29 LKAKEKINEIFEKLN 43 (60)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 109
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=29.29 E-value=1.2e+02 Score=30.77 Aligned_cols=31 Identities=10% Similarity=-0.078 Sum_probs=12.6
Q ss_pred hHHhhHhhHhHHHHHHHHHHHHHHHHHHHHH
Q 004893 57 TYQCRQMVKSDFLDALTNVEKQVRDYQSKLE 87 (724)
Q Consensus 57 ~~~~~~~~~~~~~~~l~~~e~qi~~le~~l~ 87 (724)
++..+...+..+...+...+.+|..++..+.
T Consensus 6 ~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~ 36 (323)
T 1lwu_C 6 TVQKILEEVRILEQIGVSHDAQIQELSEMWR 36 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence 3344444444444444444444433333333
No 110
>2ftx_A Hypothetical 25.2 kDa protein in AFG3-SEB2 intergenic region; alpha-beta, complex, coiled-coil, structural protein, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.300.1.1 PDB: 2fv4_A
Probab=29.21 E-value=1.2e+02 Score=24.61 Aligned_cols=73 Identities=10% Similarity=0.051 Sum_probs=41.1
Q ss_pred HHHHHhcceE--EeccccccCCccceeEEEeecccCCCCCeeEEeecCCceeeccCCCCChhhhHHHHHHHhhhcCCcch
Q 004893 631 ACCELFGYKI--VMDEHQRANGIPVTHFTLQSIYAQGDDEKLEFEYESSNTNIMVNDYTSQPEISRQVDIFVRKMNSIPA 708 (724)
Q Consensus 631 a~~~l~Gy~i--~~~~~~~~~g~~~~~~~l~s~y~~~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~ 708 (724)
..-.+||.+| .- ..++ .=+|..+.+- +-.+..+..+.+ ++..+.+.=....-..+..=|++.+.+|+
T Consensus 9 ~~e~~LGLrI~e~a----~~~d--~LrFvF~~id----e~~f~L~~~~~~-~V~~~~P~Le~~~v~~l~~~ln~t~d~~~ 77 (90)
T 2ftx_A 9 LYERLLQLRVLPGA----SDVH--DVRFVFGDDS----RCWIEVAMHGDH-VIGNSHPALDPKSRATLEHVLTVQGDLAA 77 (90)
T ss_dssp HHHHHHCEEEEECS----SSSS--CEEEEESSSS----SEEEEECSSSSC-CEEEEESCCCHHHHHHHHHHHHTSCCHHH
T ss_pred HHHHHcCcEeecCC----CCCc--eEEEEEEccc----eEEEEEEeCCCC-eeccCCCCCCHHHHHHHHHHHhccCcHHH
Confidence 3457899999 43 1122 0134444432 223333444445 66554433223335567777889999999
Q ss_pred hhhhhh
Q 004893 709 FTANLT 714 (724)
Q Consensus 709 fla~lt 714 (724)
||..+-
T Consensus 78 FLk~~R 83 (90)
T 2ftx_A 78 FLVVAR 83 (90)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998763
No 111
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=28.76 E-value=1.1e+02 Score=23.62 Aligned_cols=13 Identities=15% Similarity=0.391 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 004893 474 EFIEELESNLHAQ 486 (724)
Q Consensus 474 ~~i~~Le~~l~~~ 486 (724)
..|.+|+..+..+
T Consensus 29 ~~i~~LE~~v~~l 41 (70)
T 1gd2_E 29 DHLKALETQVVTL 41 (70)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 112
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=28.46 E-value=1.6e+02 Score=21.93 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHhHHhh
Q 004893 328 REVQQSMDQLEDELSSWKFLI 348 (724)
Q Consensus 328 ~~le~~~~~Le~el~~w~~~~ 348 (724)
..|..++..|+.+...|+..+
T Consensus 40 ~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 40 EALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666666554
No 113
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=28.33 E-value=5.8e+02 Score=27.33 Aligned_cols=6 Identities=0% Similarity=0.080 Sum_probs=2.6
Q ss_pred cccccc
Q 004893 547 MVNTLA 552 (724)
Q Consensus 547 l~~n~~ 552 (724)
+.++|.
T Consensus 262 i~~DPT 267 (497)
T 3iox_A 262 IFTDPT 267 (497)
T ss_dssp EESSGG
T ss_pred EecCCc
Confidence 344444
No 114
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=28.31 E-value=1.1e+02 Score=23.25 Aligned_cols=30 Identities=20% Similarity=0.412 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 68 FLDALTNVEKQVRDYQSKLEELNENFSKAE 97 (724)
Q Consensus 68 ~~~~l~~~e~qi~~le~~l~~l~~~l~~~e 97 (724)
+...+...+..|.+++..+......+..+.
T Consensus 16 ~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr 45 (67)
T 1zxa_A 16 FAKILMLKEERIKELEKRLSEKEEEIQELK 45 (67)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444333333333
No 115
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=28.04 E-value=1.7e+02 Score=21.07 Aligned_cols=25 Identities=8% Similarity=0.113 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 462 TKELESSLAKKEEFIEELESNLHAQ 486 (724)
Q Consensus 462 ~~~le~~l~~~~~~i~~Le~~l~~~ 486 (724)
+..|...+..+..+++.|...+..+
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al 30 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAA 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555444433
No 116
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=27.41 E-value=5.8e+02 Score=27.09 Aligned_cols=60 Identities=13% Similarity=0.323 Sum_probs=30.1
Q ss_pred ccchHHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 54 LLCTYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELA 115 (724)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~ 115 (724)
+.|.=-|- +..-|..........|.+++..+.++...-..+..-+..++..+...+....
T Consensus 74 ~yCPTtCg--lad~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~ 133 (461)
T 3ghg_B 74 VLCPTGCQ--LQEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVK 133 (461)
T ss_dssp BCEECHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred CcCCCcch--HHHHHHhcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCC
Confidence 56765552 1112333334444555556666655555555555555555555554444433
No 117
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=27.12 E-value=1.2e+02 Score=21.97 Aligned_cols=32 Identities=19% Similarity=0.384 Sum_probs=18.8
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Q 004893 413 EEVSKSEVKRIESMLSVVTEERDKLRNVVNEF 444 (724)
Q Consensus 413 ~~~~~~~~~rLek~~~~~~~er~~lr~~l~~~ 444 (724)
++.++..+..|..++..+..+.+.+++.+..|
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~~ 52 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLAQY 52 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34455555556566666666666666666543
No 118
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=26.86 E-value=1.5e+02 Score=20.14 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004893 501 SEKLNNEERRIKSLERENDRLRS 523 (724)
Q Consensus 501 ~~~l~~l~~~i~~Le~e~~~l~~ 523 (724)
.....++..++..|+.++..|+.
T Consensus 16 e~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 16 ENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Confidence 33344444555555555555543
No 119
>2e4m_C HA-17; botulinum toxin, hemagglutinin subcomponent complex; 1.85A {Clostridium botulinum}
Probab=26.69 E-value=51 Score=28.07 Aligned_cols=32 Identities=19% Similarity=0.484 Sum_probs=24.3
Q ss_pred ccCCccceeEEEeecccCCCCCeeEEeecCCceeeccCCC
Q 004893 647 RANGIPVTHFTLQSIYAQGDDEKLEFEYESSNTNIMVNDY 686 (724)
Q Consensus 647 ~~~g~~~~~~~l~s~y~~~~~~~l~f~~~~~~~~~~~~~~ 686 (724)
.|+| .|++.|+|.. +|...+.+|.+.++.++.
T Consensus 8 lp~G----nY~IkSifs~----SlyL~~~sg~ltf~~~ss 39 (146)
T 2e4m_C 8 LPNG----NYKIKSLFSD----SLYLTYSSGSLSFLNTSS 39 (146)
T ss_dssp CCSE----EEEEEESSCS----SEEEEECSSCEEEEECCS
T ss_pred cCCC----cEEEEEEecC----cEEecccCCeEEEeccCC
Confidence 6777 9999999954 477778888887776543
No 120
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.52 E-value=2.7e+02 Score=22.97 Aligned_cols=29 Identities=3% Similarity=0.170 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 78 QVRDYQSKLEELNENFSKAEAERKKFRDQ 106 (724)
Q Consensus 78 qi~~le~~l~~l~~~l~~~e~~~~~lq~~ 106 (724)
.+..+..++..+......+...+..+...
T Consensus 11 ~~~~~~~~l~~L~~~~~~l~~~i~~l~~~ 39 (112)
T 1l8d_A 11 KKTTIEEERNEITQRIGELKNKIGDLKTA 39 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444443333333333333333
No 121
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=26.30 E-value=1.5e+02 Score=26.04 Aligned_cols=67 Identities=6% Similarity=0.028 Sum_probs=31.6
Q ss_pred CcccchHHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 52 DHLLCTYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAK 118 (724)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~ 118 (724)
=.+++.++.+.+.+.++..-+.....--........-+...+..++.++..++..+..+...+..+.
T Consensus 49 l~~I~~lr~~G~sL~eIk~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 115 (142)
T 3gp4_A 49 ILFTRQMRRAGLSIEALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYD 115 (142)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567777888888777665432211112222233333444444444444444444444444433
No 122
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=25.92 E-value=6.3e+02 Score=27.01 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004893 82 YQSKLEELNENFSKAEAERKKF 103 (724)
Q Consensus 82 le~~l~~l~~~l~~~e~~~~~l 103 (724)
++.+|...+.++..+......+
T Consensus 7 yq~~la~yq~elarvqkana~a 28 (497)
T 3iox_A 7 YQAKLTAYQTELARVQKANADA 28 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444433333333
No 123
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=25.58 E-value=1.6e+02 Score=21.20 Aligned_cols=26 Identities=15% Similarity=0.233 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004893 507 EERRIKSLERENDRLRSEISLLESKL 532 (724)
Q Consensus 507 l~~~i~~Le~e~~~l~~e~~~Le~~l 532 (724)
++.++.+|......|..++..|..++
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444
No 124
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=25.50 E-value=2e+02 Score=21.12 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 004893 312 EEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFL 347 (724)
Q Consensus 312 ~lq~kl~~~E~~~~~~~~le~~~~~Le~el~~w~~~ 347 (724)
.|+.++..++..- ..|..++..|..+...|+..
T Consensus 26 ~Le~~~~~L~~~n---~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 26 SLEKKAEDLSSLN---GQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3444444444333 55555666666666666554
No 125
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=25.49 E-value=1.7e+02 Score=22.53 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 78 QVRDYQSKLEELNENFSKAEAERKKFRDQFLYAE 111 (724)
Q Consensus 78 qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le 111 (724)
.|.+++.++..+......+..+...|...+..+.
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433333333334443333333
No 126
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=25.23 E-value=2.1e+02 Score=21.30 Aligned_cols=34 Identities=18% Similarity=0.353 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 004893 312 EEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLI 348 (724)
Q Consensus 312 ~lq~kl~~~E~~~~~~~~le~~~~~Le~el~~w~~~~ 348 (724)
.|+.++..++..- ..|..++..|..+...|+..+
T Consensus 27 ~Le~~v~~L~~~n---~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 27 TLQAETDQLEDEK---SALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444333 455555666666666666554
No 127
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=24.55 E-value=2.3e+02 Score=21.41 Aligned_cols=52 Identities=17% Similarity=0.193 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 66 SDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAA 117 (724)
Q Consensus 66 ~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~ 117 (724)
.++...+...+.+|..+..-+..++.++.+...--..++++....+..+..+
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l 57 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDL 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4566666666667776666666666666666555555555554444444433
No 128
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=23.49 E-value=2.7e+02 Score=21.91 Aligned_cols=44 Identities=11% Similarity=0.142 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Q 004893 401 SAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEF 444 (724)
Q Consensus 401 ~le~e~~~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~~ 444 (724)
.+..+++.++...-.....+...+.++..+..+...++..+..+
T Consensus 28 ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 28 SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444445555555555555555443
No 129
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=23.24 E-value=2.3e+02 Score=21.05 Aligned_cols=33 Identities=6% Similarity=0.151 Sum_probs=18.8
Q ss_pred HHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 004893 410 KEKEEVSKSEVKRIESMLSVVTEERDKLRNVVN 442 (724)
Q Consensus 410 ~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~ 442 (724)
...+..+...+..|..++..+..+...|+..+-
T Consensus 29 e~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 29 TGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555555555666666666666666553
No 130
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=23.11 E-value=3.2e+02 Score=22.55 Aligned_cols=16 Identities=13% Similarity=0.360 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHHHHhc
Q 004893 429 VVTEERDKLRNVVNEF 444 (724)
Q Consensus 429 ~~~~er~~lr~~l~~~ 444 (724)
.+......+...+..+
T Consensus 28 ~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 28 ELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3334444444444444
No 131
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=23.07 E-value=2.5e+02 Score=21.37 Aligned_cols=56 Identities=23% Similarity=0.280 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 462 TKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERE 517 (724)
Q Consensus 462 ~~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e 517 (724)
+..|..++.....+|..|+..+.--..-..++-.++-.++-.-+-++.++..++.+
T Consensus 20 l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~E 75 (75)
T 3a7o_A 20 LAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKKE 75 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhcC
No 132
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=23.07 E-value=3.9e+02 Score=23.61 Aligned_cols=128 Identities=20% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHhhhHhHHHHHHH
Q 004893 137 ERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLS---DSIEREKKRLNNEVTQLKRESKSSISRI 213 (724)
Q Consensus 137 e~lk~~l~~~~~l~~~L~~e~~~~~~~e~~~~~l~~~l~~l~~el~e~~---~~~e~e~~~L~~~l~~L~~e~~~~~~~l 213 (724)
+++..-..++.............+..+++....-..++..++.++.+.. ......+....+.+.-+..+....-.+
T Consensus 17 erl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeR- 95 (147)
T 2b9c_A 17 ERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEER- 95 (147)
T ss_dssp TTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhc
Q 004893 214 GADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFS 268 (724)
Q Consensus 214 ~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~~~ 268 (724)
.+.....+..++.++..+...+..+...-..+...-..++.++..|...+.+
T Consensus 96 ---ae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L~~kLkE 147 (147)
T 2b9c_A 96 ---AELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARLKKLVGE 147 (147)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCCCCC-
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHhcC
No 133
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=22.48 E-value=6.8e+02 Score=26.18 Aligned_cols=15 Identities=7% Similarity=0.111 Sum_probs=9.6
Q ss_pred HHHHHHHhc-------ceEEec
Q 004893 629 RRACCELFG-------YKIVMD 643 (724)
Q Consensus 629 r~a~~~l~G-------y~i~~~ 643 (724)
-+.++.|+. .+|++.
T Consensus 230 le~ih~LT~~~~~~~eL~I~L~ 251 (409)
T 1m1j_C 230 NEKIHLITTQSTLPYALRIELE 251 (409)
T ss_dssp HHHHHHHHTSSSCCEEEEEEEE
T ss_pred ccceeeccccCCCCEEEEEEEE
Confidence 466777776 556663
No 134
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=22.20 E-value=6.6e+02 Score=25.90 Aligned_cols=61 Identities=3% Similarity=-0.051 Sum_probs=31.5
Q ss_pred CCCCCCCCcccchHHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 45 ESSHQPSDHLLCTYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRD 105 (724)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~ 105 (724)
...+.+++.+.++++....+..+...+...+-........++.-.+..+......+.-.++
T Consensus 115 ~v~~~~~e~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~e~~~k~~a~~af~~~~~~f~~ 175 (373)
T 3hhm_B 115 VVKEDNIEAVGKKLHEYNTQFQEKSREYDRLYEEYTRTSQEIQMKRTAIEAFNETIKIFEE 175 (373)
T ss_dssp CCSCC--CGGGC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHhcccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888777777777666666555555555555444444444333333333333
No 135
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=21.88 E-value=3.6e+02 Score=22.72 Aligned_cols=13 Identities=15% Similarity=0.018 Sum_probs=2.3
Q ss_pred CCCCCCCCCCCCc
Q 004893 41 PAGRESSHQPSDH 53 (724)
Q Consensus 41 ~~~~~~~~~~~~~ 53 (724)
|+|+-++...+|+
T Consensus 24 p~~r~~~~~~sDP 36 (115)
T 3vem_A 24 PVPQIPFPVFNDP 36 (115)
T ss_dssp ---------CCSH
T ss_pred CCCcCCCccccch
Confidence 3445555555555
No 136
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=21.56 E-value=4.2e+02 Score=23.34 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 004893 512 KSLERENDRLRSEISLLESKLGHGDFSSENTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQ 576 (724)
Q Consensus 512 ~~Le~e~~~l~~e~~~Le~~l~~~~~~~~~~ril~l~~n~~~~~~~~~~l~~l~~E~~~L~~~l~ 576 (724)
.........+...++.++.+|.+ +. -+.|.|.. .+..++.++.+.-.+++.+.
T Consensus 72 ~sA~~~~d~lekKl~~aq~kL~~--L~---------P~~P~Yak-~~a~~~q~~~d~~~~~~~~~ 124 (158)
T 3tul_A 72 DTAKSVYDAATKKLTQAQNKLQS--LD---------PADPGYAQ-AEAAVEQAGKEATEAKEALD 124 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT--C----------------CH-HHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhc--CC---------CCCcchHH-HHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555666666653 11 23455533 35556666666665554443
No 137
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=21.16 E-value=3.6e+02 Score=22.45 Aligned_cols=43 Identities=16% Similarity=0.262 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 68 FLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYA 110 (724)
Q Consensus 68 ~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~l 110 (724)
+..++.....++..+..++..++..+..++.+++-.=.++..+
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdI 51 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDI 51 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555555555544444444433
No 138
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=21.14 E-value=2.9e+02 Score=21.37 Aligned_cols=48 Identities=13% Similarity=0.173 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 70 DALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAA 117 (724)
Q Consensus 70 ~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~ 117 (724)
.+.......|..++.++..++..+...-.+.+.+-+--..++.+|+..
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatY 52 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAY 52 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555444444444444444444444443
No 139
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=21.05 E-value=4.4e+02 Score=23.44 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004893 210 ISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLS 260 (724)
Q Consensus 210 ~~~l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~ 260 (724)
...+.+++++-..-...++.-....+..+.+.+..++++......+..-..
T Consensus 88 n~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkk 138 (152)
T 4fla_A 88 NGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRK 138 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444333333334444444444444444444444444333333333
No 140
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=20.87 E-value=45 Score=33.95 Aligned_cols=54 Identities=9% Similarity=0.113 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhcceEEeccccccCCccceeEE---EeecccCCCCCeeEEeecCCceee
Q 004893 623 DRISVFRRACCELFGYKIVMDEHQRANGIPVTHFT---LQSIYAQGDDEKLEFEYESSNTNI 681 (724)
Q Consensus 623 ~k~~efr~a~~~l~Gy~i~~~~~~~~~g~~~~~~~---l~s~y~~~~~~~l~f~~~~~~~~~ 681 (724)
.-..+|.+.|...+|+.|++ . +|-...++. +.+.+..++.++|+||..+|++++
T Consensus 89 ~N~~~fl~~i~~~tG~~i~v----I-sG~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl 145 (315)
T 3mdq_A 89 SNKQVLIDRIKKEVNIDVEV----I-DGAREAELIFRGVQQAVPMEDHISLAMDIGGGSVEF 145 (315)
T ss_dssp TTHHHHHHHHHHHHCCCEEE----C-CHHHHHHHHHHHHHHHSCCTTCCEEEEEECSSCEEE
T ss_pred cCHHHHHHHHHHHHCCCeEE----e-CHHHHHHHHHHHHHhcCCCCCCCEEEEEeCCCceEE
Confidence 34568999999999999998 3 332111221 223343334579999999887663
No 141
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=20.37 E-value=1.5e+02 Score=19.94 Aligned_cols=30 Identities=27% Similarity=0.511 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 496 EIKSLSEKLNNEERRIKSLERENDRLRSEI 525 (724)
Q Consensus 496 e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~ 525 (724)
.++.||+.+...-.++..|+.++..|..++
T Consensus 7 ~mq~LNdrlAsyidkVR~LE~~N~~Le~~i 36 (39)
T 1gk7_A 7 ELQELNDRFANYIDKVRFLEQQNKILLAEL 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666555566666666665555544
No 142
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=20.08 E-value=3.3e+02 Score=21.62 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004893 71 ALTNVEKQVRDYQSKLEELNENF 93 (724)
Q Consensus 71 ~l~~~e~qi~~le~~l~~l~~~l 93 (724)
++..++..|..++.++..+...+
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555554444
Done!