Query 004893
Match_columns 724
No_of_seqs 413 out of 1384
Neff 8.5
Searched_HMMs 13730
Date Mon Mar 25 09:02:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004893.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004893hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxka_ a.2.5.1 (A:) Prefoldin 52.2 48 0.0035 25.7 12.0 82 362-443 8-104 (107)
2 d1gqea_ e.38.1.1 (A:) Polypept 47.6 82 0.006 30.2 12.6 55 252-306 24-80 (362)
3 d2cs0a1 d.93.1.1 (A:8-113) Hem 32.1 19 0.0014 28.1 4.0 56 656-714 44-99 (106)
4 d2oq1a2 d.93.1.1 (A:135-258) T 32.1 16 0.0012 29.6 3.6 54 655-710 65-118 (124)
5 d1ivsa1 a.2.7.3 (A:797-862) Va 30.0 69 0.0051 22.3 6.5 62 508-577 3-64 (66)
6 d1fxka_ a.2.5.1 (A:) Prefoldin 22.8 1.5E+02 0.011 22.5 11.9 35 499-533 69-103 (107)
7 d1i3za_ d.93.1.1 (A:) Ews/fli1 20.0 39 0.0028 25.9 3.6 55 655-710 39-97 (103)
8 d1dl5a2 d.197.1.1 (A:214-317) 19.2 88 0.0064 22.6 5.0 63 625-708 24-87 (104)
9 d1a81a1 d.93.1.1 (A:9-137) Syk 19.0 34 0.0025 27.7 3.2 53 656-710 43-95 (129)
10 d2asba3 d.52.3.1 (A:263-329) T 18.8 29 0.0021 24.8 2.2 19 630-648 49-67 (67)
No 1
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=52.16 E-value=48 Score=25.67 Aligned_cols=82 Identities=17% Similarity=0.193 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh---------------hhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 004893 362 VKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGK---------------QSAETEAALVKEKEEVSKSEVKRIESM 426 (724)
Q Consensus 362 ~~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~~~~e~ek---------------~~le~e~~~l~~~~~~~~~~~~rLek~ 426 (724)
..+..++.++..+..++..+...+...+..+.+++.-. +....-...+...++.+...+.+++++
T Consensus 8 ~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~~q 87 (107)
T d1fxka_ 8 AQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQ 87 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888888888888888877777655321 112223445566666777777777777
Q ss_pred HHhHHHHHHHHHHHHHh
Q 004893 427 LSVVTEERDKLRNVVNE 443 (724)
Q Consensus 427 ~~~~~~er~~lr~~l~~ 443 (724)
...+..+...++..+..
T Consensus 88 ~~~l~~~l~~~~~~l~~ 104 (107)
T d1fxka_ 88 EERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777766543
No 2
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=47.64 E-value=82 Score=30.23 Aligned_cols=55 Identities=18% Similarity=0.106 Sum_probs=33.4
Q ss_pred HHHHHHHHhchhhhhhccccHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004893 252 KSEVEKKLSSSTFQEFSTTDSN--ILVKHLQEEIRNYEAEVREARKLKASYENTELL 306 (724)
Q Consensus 252 ~~~Le~~~~~L~~e~~~~~e~~--~~~k~L~~ql~~le~~~~El~~Lr~~~~~~ell 306 (724)
+..+..++..|+.++.+.+-|. ...+.+..++..++........++....++..+
T Consensus 24 ld~kk~Rl~ELE~~lsdP~fW~D~~kAqkl~KE~s~L~~iVe~~~~l~~~leDl~eL 80 (362)
T d1gqea_ 24 YDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGL 80 (362)
T ss_dssp HHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCChhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666555332 344556667777777777666776666655543
No 3
>d2cs0a1 d.93.1.1 (A:8-113) Hematopoietic SH2 domain containing protein HSH2D {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.14 E-value=19 Score=28.07 Aligned_cols=56 Identities=13% Similarity=0.008 Sum_probs=34.5
Q ss_pred EEEeecccCCCCCeeEEeecCCceeeccCCCCChhhhHHHHHHHhhhcCCcchhhhhhh
Q 004893 656 FTLQSIYAQGDDEKLEFEYESSNTNIMVNDYTSQPEISRQVDIFVRKMNSIPAFTANLT 714 (724)
Q Consensus 656 ~~l~s~y~~~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~fla~lt 714 (724)
|.|+..+....-.+.+....+|..-+.+....+ +++.++|.+|-. ++||+|-.-||
T Consensus 44 y~Lsv~~~~~~~h~~I~~~~~g~~~~~~~~~~F-~sl~eLV~~y~~--~~~~~~~~~L~ 99 (106)
T d2cs0a1 44 YTLSYKAQSSCCHFMVKLLDDGTFMIPGEKVAH-TSLDALVTFHQQ--KPIEPRRELLT 99 (106)
T ss_dssp EEEEECCSSSCEEEEEEECTTSCEECTTCSCCB-SSHHHHHHHHTT--SCCSSCCCCCC
T ss_pred EEEEEEecCCceeEEEEEcCCCCEEEecCCccC-CCHHHHHHHHHH--CCCCCccCccc
Confidence 666666654333455555556666555555444 589999999954 57776654443
No 4
>d2oq1a2 d.93.1.1 (A:135-258) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.11 E-value=16 Score=29.57 Aligned_cols=54 Identities=13% Similarity=0.074 Sum_probs=31.8
Q ss_pred eEEEeecccCCCCCeeEEeecCCceeeccCCCCChhhhHHHHHHHhhhcCCcchhh
Q 004893 655 HFTLQSIYAQGDDEKLEFEYESSNTNIMVNDYTSQPEISRQVDIFVRKMNSIPAFT 710 (724)
Q Consensus 655 ~~~l~s~y~~~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~fl 710 (724)
.|.|+=+|....-.|.|..-.+|.+-+ ++...| +++.++|.+|-.....+||.|
T Consensus 65 ~yvLSv~~~~~v~H~~I~~~~~g~~~l-~~~~~F-~sl~~LV~~y~~~~~gL~~~L 118 (124)
T d2oq1a2 65 TYALSLIYGKTVYHYLISQDKAGKYCI-PEGTKF-DTLWQLVEYLKLKADGLIYCL 118 (124)
T ss_dssp EEEEEEEETTEEEEEEEEECTTSCEES-TTSCCB-SSHHHHHHHHHHCCTTSSSCC
T ss_pred CEEEEeecCCceEEEEEEECCCCCEEe-CCCccc-CCHHHHHHHHhhCCCCCcccC
Confidence 355544443222224443334455443 344334 689999999998888899865
No 5
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=29.95 E-value=69 Score=22.25 Aligned_cols=62 Identities=15% Similarity=0.131 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 004893 508 ERRIKSLERENDRLRSEISLLESKLGHGDFSSENTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQA 577 (724)
Q Consensus 508 ~~~i~~Le~e~~~l~~e~~~Le~~l~~~~~~~~~~ril~l~~n~~~~~~~~~~l~~l~~E~~~L~~~l~~ 577 (724)
..++..|..++..+...+..+...|..-.|. - +-++.+....+..+..+..+++.+...+..
T Consensus 3 ~~E~~RL~K~l~kl~~~i~~~~~kL~N~~F~------~--kAP~~Vv~~~k~kl~~~~~~~~~l~~~l~~ 64 (66)
T d1ivsa1 3 EEWRRRQEKRLKELLALAERSQRKLASPGFR------E--KAPKEVVEAEEARLKENLEQAERIREALSQ 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSTTHH------H--HSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCChHHH------H--hCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566677777788888888888888632221 0 111223333467788888888888877664
No 6
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=22.84 E-value=1.5e+02 Score=22.50 Aligned_cols=35 Identities=26% Similarity=0.466 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004893 499 SLSEKLNNEERRIKSLERENDRLRSEISLLESKLG 533 (724)
Q Consensus 499 ~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~ 533 (724)
.+..++..+...+..|+.....+..++..+...+.
T Consensus 69 ~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~ 103 (107)
T d1fxka_ 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666666666666655553
No 7
>d1i3za_ d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.97 E-value=39 Score=25.95 Aligned_cols=55 Identities=11% Similarity=0.042 Sum_probs=31.9
Q ss_pred eEEEeecccCCCCCeeEEeecCCceeeccCCCC----ChhhhHHHHHHHhhhcCCcchhh
Q 004893 655 HFTLQSIYAQGDDEKLEFEYESSNTNIMVNDYT----SQPEISRQVDIFVRKMNSIPAFT 710 (724)
Q Consensus 655 ~~~l~s~y~~~~~~~l~f~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ip~fl 710 (724)
.|.|+=+|....-.|.|+...+|..-+...+.. | +++.++|++|-.....+||-|
T Consensus 39 ~~~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~~~~~~F-~sl~~LV~~y~~~~~gl~~~L 97 (103)
T d1i3za_ 39 ALCLCVSFKKLVYSYRIFREKHGYYRIETDAHTPRTIF-PNLQELVSKYGKPGQGLVVHL 97 (103)
T ss_dssp CEEEEEECSSSEEEEEEEECTTSCEEECBCTTSCCCEE-SSSHHHHHHTTSSSSSSSSCC
T ss_pred CEEEEEEeCCeEEEEEeEEcCCCcEEEeccCCcCcccc-CCHHHHHHHhhhCCCCCeEeC
Confidence 354443332222235566666666555433321 2 579999999988777777754
No 8
>d1dl5a2 d.197.1.1 (A:214-317) Protein-L-isoaspartyl O-methyltransferase, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=19.24 E-value=88 Score=22.59 Aligned_cols=63 Identities=19% Similarity=0.230 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhcceEEeccccccCCccceeEEEeecccCCCCCeeEEeecCCceeeccCCCCChhhhHHHHHHHhh-hc
Q 004893 625 ISVFRRACCELFGYKIVMDEHQRANGIPVTHFTLQSIYAQGDDEKLEFEYESSNTNIMVNDYTSQPEISRQVDIFVR-KM 703 (724)
Q Consensus 625 ~~efr~a~~~l~Gy~i~~~~~~~~~g~~~~~~~l~s~y~~~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 703 (724)
+.-|-+.|..|+.---+| || . .|...|+....| -+|.|.+.+ .+|++..++..|=. +.
T Consensus 24 ~~ifvelvdlltrrl~e~------~g----~-----fyyagp~g~vef--l~~~mriyg----~apeie~ll~qwe~cgy 82 (104)
T d1dl5a2 24 SHIFVELVDLLTRRLTEI------DG----T-----FYYAGPNGVVEF--LDDRMRIYG----DAPEIENLLTQWESCGY 82 (104)
T ss_dssp HHHHHHHHHHHHSCEEEE------TT----E-----EEEECSSEEEEE--ETTEEEEEE----CCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHh------cC----E-----EEeeCCCceeee--cCCcEEEec----CCHhHHHHHHHHHHhCc
Confidence 456888888888777777 77 2 233345444443 356777763 23889999999963 23
Q ss_pred CCcch
Q 004893 704 NSIPA 708 (724)
Q Consensus 704 ~~ip~ 708 (724)
.|+.-
T Consensus 83 rsfe~ 87 (104)
T d1dl5a2 83 RSFEY 87 (104)
T ss_dssp CCGGG
T ss_pred hhHHH
Confidence 44443
No 9
>d1a81a1 d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.98 E-value=34 Score=27.70 Aligned_cols=53 Identities=8% Similarity=0.001 Sum_probs=32.2
Q ss_pred EEEeecccCCCCCeeEEeecCCceeeccCCCCChhhhHHHHHHHhhhcCCcchhh
Q 004893 656 FTLQSIYAQGDDEKLEFEYESSNTNIMVNDYTSQPEISRQVDIFVRKMNSIPAFT 710 (724)
Q Consensus 656 ~~l~s~y~~~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~fl 710 (724)
|.|+=+|...--.|.|+...+|.+-+- +...| +++.++|.+|-.....+||-|
T Consensus 43 y~LSv~~~~~v~H~~I~~~~~g~~~i~-~~~~F-~sl~eLV~~Y~~~~~gl~~~L 95 (129)
T d1a81a1 43 FALSVAHGRKAHHYTIERELNGTYAIA-GGRTH-ASPADLCHYHSQESDGLVCLL 95 (129)
T ss_dssp EEEEEEETTEEEEEEEEECTTSCEEET-TSCCB-SSHHHHHHHHTTCCTTSSSCC
T ss_pred eEEEeeecccceEEEEEEcCCCCeeec-CCccc-CCHHHHHHHHhhCCCCCcccC
Confidence 555444432222344554455655553 33334 579999999998888888855
No 10
>d2asba3 d.52.3.1 (A:263-329) Transcription factor NusA, C-terminal domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=18.79 E-value=29 Score=24.77 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=0.0
Q ss_pred HHHHHHhcceEEecccccc
Q 004893 630 RACCELFGYKIVMDEHQRA 648 (724)
Q Consensus 630 ~a~~~l~Gy~i~~~~~~~~ 648 (724)
.....|+||+|++.++-.|
T Consensus 49 rLas~Ltg~~IdI~~ese~ 67 (67)
T d2asba3 49 RLAARLTGWRIDIRGDAPP 67 (67)
T ss_dssp HHHHHHHSCEEEEEESSCC
T ss_pred HHHHHHHCCEEEEEeCCCC
Done!