Query 004894
Match_columns 724
No_of_seqs 193 out of 225
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 09:04:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004894.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004894hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x3zb1 a.189.1.1 (B:253-309) 22.2 17 0.0012 26.4 1.6 34 511-564 23-56 (57)
2 d1v54k_ f.23.5.1 (K:) Mitochon 20.7 22 0.0016 25.5 1.9 20 670-689 22-41 (49)
3 d1gxha_ a.28.2.1 (A:) ImmE8 (I 14.2 1.3E+02 0.0093 23.9 5.4 64 555-641 13-76 (85)
4 d1ayia_ a.28.2.1 (A:) ImmE7 pr 7.5 2.2E+02 0.016 22.5 4.4 66 555-641 13-78 (86)
5 d2vlqa1 a.28.2.1 (A:4-84) ImmE 6.7 3E+02 0.022 21.4 4.9 64 555-640 10-73 (81)
6 d2npta1 d.15.2.2 (A:4-108) Mit 6.4 2E+02 0.015 23.3 3.7 30 625-662 35-64 (105)
7 d1ho8a_ a.118.1.9 (A:) Regulat 6.2 7.1E+02 0.051 25.0 9.1 143 375-559 184-346 (477)
8 d1x58a1 a.4.1.1 (A:8-56) Hypot 6.1 1.5E+02 0.011 20.8 2.3 22 38-62 22-44 (49)
9 d1bu2a2 a.74.1.1 (A:149-250) V 5.7 75 0.0055 25.0 0.6 34 24-68 9-42 (102)
10 d2pf1a2 g.32.1.1 (A:36-65) Pro 4.8 1.1E+02 0.0082 19.3 0.9 23 34-57 2-24 (30)
No 1
>d1x3zb1 a.189.1.1 (B:253-309) Rad23 STI1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.18 E-value=17 Score=26.41 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhHHHhhhhcccccCCCCcCCchhhhhhhhhhhHHHHHHHHHHH
Q 004894 511 RLVSLFYMLSRKYNKIADRRDDKKGNLTEQDSFAEDMSAELHIYTDFLRIVLEI 564 (724)
Q Consensus 511 RLv~Lf~~lS~~~~~l~~~~~~~~~~~~~~~~~~~d~~~el~~~~~~L~~lLEi 564 (724)
-|.-||+.+|.||-.+++++.. | -+.++.|+||+
T Consensus 23 al~plle~ls~ryp~lre~im~----------------n----pe~fismllea 56 (57)
T d1x3zb1 23 ALAPLLENISARYPQLREHIMA----------------N----PEVFVSMLLEA 56 (57)
T ss_dssp GHHHHHHHHHTTCHHHHHHHHT----------------C----HHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhHHHHHHHHh----------------C----HHHHHHHHHhh
Confidence 4677999999999888776531 2 24789999986
No 2
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.70 E-value=22 Score=25.50 Aligned_cols=20 Identities=30% Similarity=0.750 Sum_probs=17.1
Q ss_pred hhHHHHhhhcCccccCCCcc
Q 004894 670 YVWQLVLSRCGFSFNPSAIN 689 (724)
Q Consensus 670 yvW~~v~~~~g~~w~~~~i~ 689 (724)
-||..|.-|.||.||-+-+.
T Consensus 22 avW~yv~TQ~gI~WnlSPVG 41 (49)
T d1v54k_ 22 AVWVYMATQIGIEWNPSPVG 41 (49)
T ss_dssp HHHHHHHHHSCCCCCCCCTT
T ss_pred hhhhheeeeeeeeecccccc
Confidence 48999999999999987554
No 3
>d1gxha_ a.28.2.1 (A:) ImmE8 (Im8) {Escherichia coli [TaxId: 562]}
Probab=14.21 E-value=1.3e+02 Score=23.87 Aligned_cols=64 Identities=23% Similarity=0.265 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcchhHHhhccccccccccCCcchHHHHhhHHHHHHhhhhhhhccccCCCCCHHHHHHH
Q 004894 555 TDFLRIVLEILNAILTYALPRNPEVVYAILHREEVFQPFKSHPRFNELLENIYTVLDFFNSRLDAQRVDGEWSVEKVLQS 634 (724)
Q Consensus 555 ~~~L~~lLEiiNsiL~~ql~~Np~LVYalL~~r~~F~~l~~hp~f~~~~~Ni~~vi~~f~~~l~~~~~~~~~s~~~vl~~ 634 (724)
.++|.+|-+|+|+- +...-.-.++ +-|..+..||.-.|+|=- ...+.+-|++.|++.
T Consensus 13 ~EFl~fl~~i~n~~------~~e~~~d~ll---~hF~~iteHP~gsDLIfY--------------P~~~~edsPegIv~~ 69 (85)
T d1gxha_ 13 TEFKKIIEDIINCE------GDEKKQDDNL---EHFISVTEHPSGSDLIYY--------------PEGNNDGSPEAVIKE 69 (85)
T ss_dssp HHHHHHHHHHHHTC------SSSHHHHHHH---HHHHHTTCCTTTTHHHHS--------------CCSSCSSCTHHHHHH
T ss_pred HHHHHHHHHHHhcC------CchHHHHHHH---HHHHHhcCCCCCCceeee--------------CCCCCCCCHHHHHHH
Confidence 38999999998642 2222333333 237778888877777632 233445699999999
Q ss_pred HHhhccc
Q 004894 635 IIINCRS 641 (724)
Q Consensus 635 I~~~~~~ 641 (724)
|++.-.+
T Consensus 70 IKeWRa~ 76 (85)
T d1gxha_ 70 IKEWRAA 76 (85)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9965443
No 4
>d1ayia_ a.28.2.1 (A:) ImmE7 protein (Im7) {Escherichia coli [TaxId: 562]}
Probab=7.51 E-value=2.2e+02 Score=22.51 Aligned_cols=66 Identities=17% Similarity=0.162 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcchhHHhhccccccccccCCcchHHHHhhHHHHHHhhhhhhhccccCCCCCHHHHHHH
Q 004894 555 TDFLRIVLEILNAILTYALPRNPEVVYAILHREEVFQPFKSHPRFNELLENIYTVLDFFNSRLDAQRVDGEWSVEKVLQS 634 (724)
Q Consensus 555 ~~~L~~lLEiiNsiL~~ql~~Np~LVYalL~~r~~F~~l~~hp~f~~~~~Ni~~vi~~f~~~l~~~~~~~~~s~~~vl~~ 634 (724)
.++|.+|-+|+++-....-..-..|| +-|..+..||.-.|+|=. ...+.+-|++.|+..
T Consensus 13 ~EFl~fl~~i~~~~~~~~e~~~d~l~-------~hF~~iteHP~gsDLIyY--------------P~~~~edsPegI~k~ 71 (86)
T d1ayia_ 13 AEFVQLLKEIEKENVAATDDVLDVLL-------EHFVKITEHPDGTDLIYY--------------PSDNRDDSPEGIVKE 71 (86)
T ss_dssp HHHHHHHHHHHHHHTSSSSHHHHHHH-------HHHHHHHCCTTTTHHHHS--------------CCTTSCCSHHHHHHH
T ss_pred HHHHHHHHHHHhccCCccHHHHHHHH-------HHHHHHHcCCCCCceeee--------------CCCCCCCCHHHHHHH
Confidence 38888888888753322111001111 125556666665555422 223345599999999
Q ss_pred HHhhccc
Q 004894 635 IIINCRS 641 (724)
Q Consensus 635 I~~~~~~ 641 (724)
|++.-.+
T Consensus 72 IKeWRa~ 78 (86)
T d1ayia_ 72 IKEWRAA 78 (86)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9965443
No 5
>d2vlqa1 a.28.2.1 (A:4-84) ImmE9 protein (Im9) {Escherichia coli [TaxId: 562]}
Probab=6.72 E-value=3e+02 Score=21.37 Aligned_cols=64 Identities=19% Similarity=0.257 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcchhHHhhccccccccccCCcchHHHHhhHHHHHHhhhhhhhccccCCCCCHHHHHHH
Q 004894 555 TDFLRIVLEILNAILTYALPRNPEVVYAILHREEVFQPFKSHPRFNELLENIYTVLDFFNSRLDAQRVDGEWSVEKVLQS 634 (724)
Q Consensus 555 ~~~L~~lLEiiNsiL~~ql~~Np~LVYalL~~r~~F~~l~~hp~f~~~~~Ni~~vi~~f~~~l~~~~~~~~~s~~~vl~~ 634 (724)
.++|.+|-+|+|+--. ...- +-.--+-|..+..||.-.|+|=. ...+.+-|++.|++.
T Consensus 10 ~EFl~fl~~i~~~~~~-----te~~---~d~l~~hF~~iteHP~gsDLIfY--------------P~~~~edsPegIv~~ 67 (81)
T d2vlqa1 10 AEFLQLVTTICNADTS-----SEEE---LVKLVTHFEEMTEHPSGSDLIYY--------------PKEGDDDSPSGIVNT 67 (81)
T ss_dssp HHHHHHHHHHHHTCSS-----SHHH---HHHHHHHHHHHHCCTTTTHHHHS--------------CCTTCCCSHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC-----CHHH---HHHHHHHHHHHccCCCCCceeee--------------CCCCCcCCHHHHHHH
Confidence 3899998888873210 0000 00111224555556655555421 223446699999999
Q ss_pred HHhhcc
Q 004894 635 IIINCR 640 (724)
Q Consensus 635 I~~~~~ 640 (724)
|++.-.
T Consensus 68 IK~WRa 73 (81)
T d2vlqa1 68 VKQWRA 73 (81)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 996443
No 6
>d2npta1 d.15.2.2 (A:4-108) Mitogen activated protein kinase kinase 5, Map2k5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.40 E-value=2e+02 Score=23.30 Aligned_cols=30 Identities=27% Similarity=0.242 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHhhcccCCCCCCCCCCCCceeeeeCCC
Q 004894 625 EWSVEKVLQSIIINCRSWRGDGLKMFTRLYFSYEQESH 662 (724)
Q Consensus 625 ~~s~~~vl~~I~~~~~~~~~~~l~~f~~l~F~YeEe~~ 662 (724)
.++-.+||++|++... + -..-.|.||.|+-
T Consensus 35 ~l~F~dvL~~i~q~~p----~----at~taFEYEDEdG 64 (105)
T d2npta1 35 QLLFRDVLDVIGQVLP----E----ATTTAFEYEDEDG 64 (105)
T ss_dssp CCCHHHHHHHHHHHST----T----SCCSEEEEECTTS
T ss_pred eeeHHHHHHHHHHhcc----c----ccccceeeccccC
Confidence 5789999999998764 2 2357899998864
No 7
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.24 E-value=7.1e+02 Score=25.02 Aligned_cols=143 Identities=12% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCccchhhhhcccChhhhHHHHHHHHHhcccCCC--------------CchHHHHHHHHHhcCCchhhhh
Q 004894 375 AVLLLYSLVQGNSGFLEYVLVRTDLDTLLMPILETLYNASKKTP--------------NQIYMLLIILLILSQDSSFNAS 440 (724)
Q Consensus 375 ~~lLLy~Ll~~N~~F~~yvl~~~d~~~ll~piL~~ly~~~~~~s--------------~~v~m~l~ILLiLS~d~~F~~~ 440 (724)
..+-++..+=..+.||.-+. ..-...+.|++.+|-.+-...+ +..|=+++++-.||=+..++..
T Consensus 184 i~v~~lq~llr~~~~R~~fw--~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~ 261 (477)
T d1ho8a_ 184 VCIRLLQELAVIPEYRDVIW--LHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANE 261 (477)
T ss_dssp HHHHHHHHHHTSHHHHHHHH--TTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHhcCccHHHHHH--HcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHH
Q ss_pred hcccccCCCcccccccccccCchhHHHHHHHHHHhhhcccccccccchhHHHHHhhhchhcccCCHHHHH------HHHH
Q 004894 441 IHKMILPSVPWYKEHLLHQTSLGSLLVIILIRTVKYNLSKLRDVYLHTTCLATLANMAPHVHRLSAYASQ------RLVS 514 (724)
Q Consensus 441 ln~~~l~~ipw~~er~l~~~SlgdLlIlvl~r~I~~n~~~l~d~ylht~cLaiLaN~Spy~~~Ls~~asq------RLv~ 514 (724)
+.+.+.. +|..+++++... .|-+-+= -|++++-|+..--..-...++. ++..
T Consensus 262 l~~~~~~------------------~i~~l~~i~~~s-~KEKvvR---v~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~ 319 (477)
T d1ho8a_ 262 LVQKYLS------------------DFLDLLKLVKIT-IKEKVSR---LCISIILQCCSTRVKQHKKVIKQLLLLGNALP 319 (477)
T ss_dssp HHTTSHH------------------HHHHHHHHHHHC-CSHHHHH---HHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHH
T ss_pred HHHhhhH------------------HHHHHHHHHHhh-hHHHHHH---HHHHHHHHHhhhhhhhhhhHHHHHHHHcchhH
Q ss_pred HHHHHHHhHHHhhhhcccccCCCCcCCchhhhhhhhhhhHHHHHH
Q 004894 515 LFYMLSRKYNKIADRRDDKKGNLTEQDSFAEDMSAELHIYTDFLR 559 (724)
Q Consensus 515 Lf~~lS~~~~~l~~~~~~~~~~~~~~~~~~~d~~~el~~~~~~L~ 559 (724)
+++.|..|.+ .-||..+|++.+.+.|.
T Consensus 320 ~l~~L~~r~~------------------~Dedl~edl~~L~~~L~ 346 (477)
T d1ho8a_ 320 TVQSLSERKY------------------SDEELRQDISNLKEILE 346 (477)
T ss_dssp HHHHHHSSCC------------------SSHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC------------------CCHHHHHHHHHHHHHHH
No 8
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.08 E-value=1.5e+02 Score=20.80 Aligned_cols=22 Identities=18% Similarity=0.525 Sum_probs=13.9
Q ss_pred HHHH-hccCCCCCCCCcchhHHHHHH
Q 004894 38 FWQK-LLELPLSLHWPSHRVHQACEA 62 (724)
Q Consensus 38 FW~q-~ws~p~s~~~p~~~~~~~~~~ 62 (724)
-||. +|++|+ + |.-+..++++.
T Consensus 22 ~WNsILWs~PF--~-~GR~~vdLA~K 44 (49)
T d1x58a1 22 HWNSILWSFPF--Q-KGRRAVDLAHK 44 (49)
T ss_dssp CHHHHHHHSCC--C-TTCCHHHHHHH
T ss_pred hhhhhhhccCC--C-CCchhhHHHHH
Confidence 4988 899994 3 33455555543
No 9
>d1bu2a2 a.74.1.1 (A:149-250) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]}
Probab=5.69 E-value=75 Score=24.99 Aligned_cols=34 Identities=26% Similarity=0.513 Sum_probs=24.6
Q ss_pred HhhhCCccCCCCchHHHHhccCCCCCCCCcchhHHHHHHHhhhcC
Q 004894 24 ATFVGEKSFPLASDFWQKLLELPLSLHWPSHRVHQACEAFAQNNC 68 (724)
Q Consensus 24 ~rls~~~~I~~~D~FW~q~ws~p~s~~~p~~~~~~~~~~l~~nn~ 68 (724)
--++..-.||+ +||-|+++. +...+|+.+++-|+
T Consensus 9 ip~c~alkipe--~~wpql~e~---------~s~tickaliqpni 42 (102)
T d1bu2a2 9 IPLCNALKIPE--DLWPQLYEA---------ASTTICKALIQPNI 42 (102)
T ss_dssp HHHHHHTTCCT--TSHHHHHHH---------HHHHHHHHTTSTTG
T ss_pred HHhhhhccCcH--HHhHHHHHH---------HHHHHHHHHcCCCc
Confidence 34555555665 599999987 35678999998775
No 10
>d2pf1a2 g.32.1.1 (A:36-65) Prothrombin {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.84 E-value=1.1e+02 Score=19.30 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=13.8
Q ss_pred CCchHHHHhccCCCCCCCCcchhH
Q 004894 34 LASDFWQKLLELPLSLHWPSHRVH 57 (724)
Q Consensus 34 ~~D~FW~q~ws~p~s~~~p~~~~~ 57 (724)
+.|.||.+.-.-- |...|.|.+.
T Consensus 2 atd~fwakytace-s~r~prekl~ 24 (30)
T d2pf1a2 2 ATDAFWAKYTACE-SARNPREKLN 24 (30)
T ss_dssp CSHHHHHHHHHTS-TTCSSHHHHH
T ss_pred chhHHHHHHHHHH-HhcCcHHHHH
Confidence 5688998876532 3455555443
Done!