BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004895
(724 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 78/147 (53%), Gaps = 15/147 (10%)
Query: 577 LKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQLP 636
L+ LD + + S + S L +L NL++L ++ DI +G L L+ LSL G ++K +
Sbjct: 175 LERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG 233
Query: 637 LQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGSNASLAEL 696
+ LT L LDL+N + + +AP +S L++L EL +G ++++ L
Sbjct: 234 -TLASLTNLTDLDLAN-NQISNLAP--LSGLTKLTELKLG----------ANQISNISPL 279
Query: 697 KGLSKLTTLEIDVRDAEMLRRIWSLGN 723
GL+ LT LE++ E + I +L N
Sbjct: 280 AGLTALTNLELNENQLEDISPISNLKN 306
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 78/147 (53%), Gaps = 15/147 (10%)
Query: 577 LKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQLP 636
L+ LD + + S + S L +L NL++L ++ DI +G L L+ LSL G ++K +
Sbjct: 175 LERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG 233
Query: 637 LQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGSNASLAEL 696
+ LT L LDL+N + + +AP +S L++L EL +G ++++ L
Sbjct: 234 -TLASLTNLTDLDLAN-NQISNLAP--LSGLTKLTELKLG----------ANQISNISPL 279
Query: 697 KGLSKLTTLEIDVRDAEMLRRIWSLGN 723
GL+ LT LE++ E + I +L N
Sbjct: 280 AGLTALTNLELNENQLEDISPISNLKN 306
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 78/147 (53%), Gaps = 15/147 (10%)
Query: 577 LKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQLP 636
L+ LD + + S + S L +L NL++L ++ DI +G L L+ LSL G ++K +
Sbjct: 175 LERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG 233
Query: 637 LQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGSNASLAEL 696
+ LT L LDL+N + + +AP +S L++L EL +G ++++ L
Sbjct: 234 -TLASLTNLTDLDLAN-NQISNLAP--LSGLTKLTELKLG----------ANQISNISPL 279
Query: 697 KGLSKLTTLEIDVRDAEMLRRIWSLGN 723
GL+ LT LE++ E + I +L N
Sbjct: 280 AGLTALTNLELNENQLEDISPISNLKN 306
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 78/147 (53%), Gaps = 15/147 (10%)
Query: 577 LKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQLP 636
L+ LD + + S + S L +L NL++L ++ DI +G L L+ LSL G ++K +
Sbjct: 174 LERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG 232
Query: 637 LQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGSNASLAEL 696
+ LT L LDL+N + + +AP +S L++L EL +G ++++ L
Sbjct: 233 -TLASLTNLTDLDLAN-NQISNLAP--LSGLTKLTELKLG----------ANQISNISPL 278
Query: 697 KGLSKLTTLEIDVRDAEMLRRIWSLGN 723
GL+ LT LE++ E + I +L N
Sbjct: 279 AGLTALTNLELNENQLEDISPISNLKN 305
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 78/147 (53%), Gaps = 15/147 (10%)
Query: 577 LKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQLP 636
L+ LD + + S + S L +L NL++L ++ DI +G L L+ LSL G ++K +
Sbjct: 174 LERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG 232
Query: 637 LQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGSNASLAEL 696
+ LT L LDL+N + + +AP +S L++L EL +G ++++ L
Sbjct: 233 -TLASLTNLTDLDLAN-NQISNLAP--LSGLTKLTELKLG----------ANQISNISPL 278
Query: 697 KGLSKLTTLEIDVRDAEMLRRIWSLGN 723
GL+ LT LE++ E + I +L N
Sbjct: 279 AGLTALTNLELNENQLEDISPISNLKN 305
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 78/147 (53%), Gaps = 15/147 (10%)
Query: 577 LKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQLP 636
L+ LD + + S + S L +L NL++L ++ DI +G L L+ LSL G ++K +
Sbjct: 179 LERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG 237
Query: 637 LQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGSNASLAEL 696
+ LT L LDL+N + + +AP +S L++L EL +G ++++ L
Sbjct: 238 -TLASLTNLTDLDLAN-NQISNLAP--LSGLTKLTELKLG----------ANQISNISPL 283
Query: 697 KGLSKLTTLEIDVRDAEMLRRIWSLGN 723
GL+ LT LE++ E + I +L N
Sbjct: 284 AGLTALTNLELNENQLEDISPISNLKN 310
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 78/147 (53%), Gaps = 15/147 (10%)
Query: 577 LKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQLP 636
L+ LD + + S + S L +L NL++L ++ DI +G L L+ LSL G ++K +
Sbjct: 178 LERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG 236
Query: 637 LQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGSNASLAEL 696
+ LT L LDL+N + + +AP +S L++L EL +G ++++ L
Sbjct: 237 -TLASLTNLTDLDLAN-NQISNLAP--LSGLTKLTELKLG----------ANQISNISPL 282
Query: 697 KGLSKLTTLEIDVRDAEMLRRIWSLGN 723
GL+ LT LE++ E + I +L N
Sbjct: 283 AGLTALTNLELNENQLEDISPISNLKN 309
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 104/254 (40%), Gaps = 44/254 (17%)
Query: 161 IFNSRKKIFQDVIEALKDDKLN----IIGVCGMGGVGKTTLVKQIAK--QVMEDNVFDKV 214
IF +RKK+ + + L KLN + + GM G GK+ L + + ++E V
Sbjct: 125 IFVTRKKLVHAIQQKLW--KLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGV 182
Query: 215 VMAEITKNPDA---QKIQGELASDLGMNFDSNDLIYHR-------AKQLCQ--RLKKEKR 262
I K + K+Q +L M D + R AK + L+K R
Sbjct: 183 HWVSIGKQDKSGLLMKLQ-----NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPR 237
Query: 263 VLIILDNIWTKLELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDLLCIDMNSQKMFWI 322
L+ILD++W L +C I+LT+R + + M + + +
Sbjct: 238 SLLILDDVWDPWVLKAF---------------DNQCQILLTTRDKSVTDSVMGPKHVVPV 282
Query: 323 DA-LSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTVANALKNKSPAIWK 381
++ L E+ L++ V + K D A I+ +C G P+ +S + L++ P W
Sbjct: 283 ESGLGREKGLEILSLFV--NMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRD-FPNRWA 339
Query: 382 DALNKLTSSNLREI 395
L +L + + I
Sbjct: 340 YYLRQLQNKQFKRI 353
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 103/248 (41%), Gaps = 32/248 (12%)
Query: 161 IFNSRKKIFQDVIEALKDDK--LNIIGVCGMGGVGKTTLVKQIAK-QVMEDNVFDKVVMA 217
+F +RKK+ + + L K + + GM G GK+ L + + + + F V
Sbjct: 125 VFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHW 184
Query: 218 EITKNPDAQKIQGELASDLGMNFDSNDLIYHR-------AKQLCQ--RLKKEKRVLIILD 268
D + +L +L D ++ R AK + L+K R L+ILD
Sbjct: 185 VSVGKQDKSGLLMKL-QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILD 243
Query: 269 NIWTKLELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDLLCIDMNSQKMFWID-ALSE 327
++W L +C I+LT+R + + M + + ++ +L +
Sbjct: 244 DVWDSWVLKAFD---------------SQCQILLTTRDKSVTDSVMGPKYVVPVESSLGK 288
Query: 328 EEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTVANALKNKSPAIWKDALNKL 387
E+ L++ V + K +D A I+ +C G P+ +S + L++ P W+ L +L
Sbjct: 289 EKGLEILSLFV--NMKKADLPEQAHSIIKECKGSPLVVSLIGALLRD-FPNRWEYYLKQL 345
Query: 388 TSSNLREI 395
+ + I
Sbjct: 346 QNKQFKRI 353
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 103/254 (40%), Gaps = 44/254 (17%)
Query: 161 IFNSRKKIFQDVIEALKDDKLN----IIGVCGMGGVGKTTLVKQIAK--QVMEDNVFDKV 214
IF +RKK+ + + L KLN + + GM G GK+ L + + ++E V
Sbjct: 132 IFVTRKKLVHAIQQKLW--KLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGV 189
Query: 215 VMAEITKNPDA---QKIQGELASDLGMNFDSNDLIYHR-------AKQLCQ--RLKKEKR 262
I K + K+Q +L M D + R AK + L+K R
Sbjct: 190 HWVSIGKQDKSGLLMKLQ-----NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPR 244
Query: 263 VLIILDNIWTKLELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDLLCIDMNSQKMFWI 322
L+ILD++W L +C I+LT+ + + M + + +
Sbjct: 245 SLLILDDVWDPWVLKAF---------------DNQCQILLTTSDKSVTDSVMGPKHVVPV 289
Query: 323 DA-LSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTVANALKNKSPAIWK 381
++ L E+ L++ V + K D A I+ +C G P+ +S + L++ P W
Sbjct: 290 ESGLGREKGLEILSLFV--NMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRD-FPNRWA 346
Query: 382 DALNKLTSSNLREI 395
L +L + + I
Sbjct: 347 YYLRQLQNKQFKRI 360
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 103/248 (41%), Gaps = 32/248 (12%)
Query: 161 IFNSRKKIFQDVIEALKDDK--LNIIGVCGMGGVGKTTLVKQIAK-QVMEDNVFDKVVMA 217
+F +RKK+ + + L K + + GM G GK+ L + + + + F V
Sbjct: 131 VFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHW 190
Query: 218 EITKNPDAQKIQGELASDLGMNFDSNDLIYHR-------AKQLCQ--RLKKEKRVLIILD 268
D + +L +L D ++ R AK + L+K R L+ILD
Sbjct: 191 VSVGKQDKSGLLMKL-QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILD 249
Query: 269 NIWTKLELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDLLCIDMNSQKMFWID-ALSE 327
++W L +C I+LT+R + + M + + ++ +L +
Sbjct: 250 DVWDSWVLKAF---------------DSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGK 294
Query: 328 EEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTVANALKNKSPAIWKDALNKL 387
E+ L++ V + K +D A I+ +C G P+ +S + L++ P W+ L +L
Sbjct: 295 EKGLEILSLFV--NMKKADLPEQAHSIIKECKGSPLVVSLIGALLRD-FPNRWEYYLKQL 351
Query: 388 TSSNLREI 395
+ + I
Sbjct: 352 QNKQFKRI 359
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 593 SLGRLINLQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQ 646
SL L NL+ L + +L+ I ++G L KLE+L L G EI G LTRL+
Sbjct: 123 SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEIT----NTGGLTRLK 172
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 600 LQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDL 650
L L LD L D + LK LEILS+R ++K + + +G L++L++LDL
Sbjct: 108 LSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDL 157
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 592 SSLGRLINLQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLS 651
+ L L L++L L ++ DI ++ +L KL+ LSL +I+++ + + +LT+LQ L LS
Sbjct: 126 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRI-VPLARLTKLQNLYLS 184
>pdb|3RYS|A Chain A, The Crystal Structure Of Adenine Deaminase (Aaur1117) From
Arthrobacter Aurescens
pdb|3RYS|B Chain B, The Crystal Structure Of Adenine Deaminase (Aaur1117) From
Arthrobacter Aurescens
Length = 343
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 14/116 (12%)
Query: 505 EKLMFSIPNVVDFEREMEETIQKGPI-------AISLPYRDIQELPERLECPQLKLFL-L 556
EK + P V + +E T+Q I I LPY DI+EL E+ E L+ FL L
Sbjct: 6 EKTTSTAPPVAELHLHIEGTLQPELIFALAERNGIELPYEDIEELREKYEFTDLQSFLDL 65
Query: 557 FAKYDSTLQISDHFFEGTEE-LKVLDFTGIRFSPL----PSSLGRLINLQTLCLDG 607
+ + LQ F + T L+ G+R + + + R + L+T C++G
Sbjct: 66 YYANMAVLQTEQDFTDMTRAYLERAAAGGVRHAEIMMDPQAHTSRGVALET-CVNG 120
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Query: 569 HFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLEDIAIV--GQLKKLEILS 626
H F G +EL D T S LPS L L L+ L L + E++ + L LS
Sbjct: 275 HCFSGLQEL---DLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331
Query: 627 LRGAEIKQLPLQIG---QLTRLQLLDLSN 652
++G K+L L G L L+ LDLS+
Sbjct: 332 IKG-NTKRLELGTGCLENLENLRELDLSH 359
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 16/139 (11%)
Query: 597 LINLQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSL 656
L NL L L ++ D+A + L K+ L L G +K + I L ++ LDL+ + +
Sbjct: 62 LNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT-STQI 119
Query: 657 VVIAPNVISKLSRLEELYM------------GDSFSQWDKVEGGSNASLAELKGLSKLTT 704
+ P ++ LS L+ LY+ G + Q+ + + L L LSKLTT
Sbjct: 120 TDVTP--LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTT 177
Query: 705 LEIDVRDAEMLRRIWSLGN 723
L+ D + + SL N
Sbjct: 178 LKADDNKISDISPLASLPN 196
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 597 LINLQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQI-GQLTRLQLLDLSNCSS 655
L N++ L L G +L DI+ + +L L L L G +++ LP + +LT L+ L L +
Sbjct: 62 LPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQ 120
Query: 656 LVVIAPNVISKLSRLEELYM 675
L + V KL+ L LY+
Sbjct: 121 LQSLPDGVFDKLTNLTYLYL 140
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 592 SSLGRLINLQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLS 651
+ L L L++L L ++ DI ++ +L KL+ LSL +I + + + LT+LQ L LS
Sbjct: 128 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLS 186
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 597 LINLQTLCLDGWRLEDI-AIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSS 655
L+NLQ+L L+ + + A + L+ L+ L +R + + L I L +L+ LDL C++
Sbjct: 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTA 241
Query: 656 LVVIAP 661
L P
Sbjct: 242 LRNYPP 247
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 592 SSLGRLINLQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLS 651
+ L L L++L L ++ DI ++ +L KL+ LSL +I + + + LT+LQ L LS
Sbjct: 148 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLS 206
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 592 SSLGRLINLQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLS 651
+ L L L++L L ++ DI ++ +L KL+ LSL +I + + + LT+LQ L LS
Sbjct: 128 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLS 186
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 592 SSLGRLINLQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLS 651
+ L L L++L L ++ DI ++ +L KL+ LSL +I + + + LT+LQ L LS
Sbjct: 126 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLS 184
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 592 SSLGRLINLQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLS 651
+ L L L++L L ++ DI ++ +L KL+ LSL +I + + + LT+LQ L LS
Sbjct: 125 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLS 183
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 592 SSLGRLINLQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLS 651
+ L L L++L L ++ DI ++ +L KL+ LSL +I + + + LT+LQ L LS
Sbjct: 123 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLACLTKLQNLYLS 181
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 592 SSLGRLINLQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLS 651
+ L L + L L G L++++ + L+ ++ L L +I + G L+ LQ+L L
Sbjct: 85 TPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG-LSNLQVLYL- 142
Query: 652 NCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRD 711
+ + + I+P ++ L+ L+ L +G++ L L LSKLTTL D
Sbjct: 143 DLNQITNISP--LAGLTNLQYLSIGNN----------QVNDLTPLANLSKLTTLRADDNK 190
Query: 712 AEMLRRIWSLGN 723
+ + SL N
Sbjct: 191 ISDISPLASLPN 202
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 28/128 (21%)
Query: 597 LINLQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQLP-------------------L 637
L N++ L L G +L DI+ + +L L L L G +++ LP L
Sbjct: 62 LPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 638 Q------IGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGSNA 691
Q +LT L L+L++ + L + V KL+ L EL + S++Q + G
Sbjct: 122 QSLPDGVFDKLTNLTYLNLAH-NQLQSLPKGVFDKLTNLTELDL--SYNQLQSLPEGVFD 178
Query: 692 SLAELKGL 699
L +LK L
Sbjct: 179 KLTQLKDL 186
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 566 ISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLEDIAIV--GQLKKLE 623
IS F+ +L+ LD T LPS + L L+ L L + + + L
Sbjct: 266 ISSTTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLT 325
Query: 624 ILSLRGAEIKQLPLQIG---QLTRLQLLDLSN 652
L +RG +K+L L +G +L LQ LDLS+
Sbjct: 326 HLYIRG-NVKKLHLGVGCLEKLGNLQTLDLSH 356
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 592 SSLGRLINLQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLS 651
+ L L L++L L ++ DI ++ +L KL+ LSL +I + + + LT+LQ L LS
Sbjct: 146 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLS 204
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 592 SSLGRLINLQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLS 651
+ L L L++L L ++ DI ++ +L KL+ LSL +I + + + LT+LQ L LS
Sbjct: 146 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLS 204
>pdb|2IIR|A Chain A, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|B Chain B, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|C Chain C, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|D Chain D, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|E Chain E, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|F Chain F, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|G Chain G, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|H Chain H, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|I Chain I, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|J Chain J, Acetate Kinase From A Hypothermophile Thermotoga Maritima
Length = 403
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 15/125 (12%)
Query: 426 LHREGRPIHV--------HYLLRYVMGLRYDKGLGLFRNVYTLEAARNRVDALIDNLKAS 477
+HR G HV L+ ++ D+ LG+ +++ ++A +RV + K S
Sbjct: 42 VHRVGDEKHVIERELPDHEEALKLILNTLVDEKLGVIKDLKEIDAVGHRVVHGGERFKES 101
Query: 478 CLLLDG------DAEDEAKLHDVIHVVAASIAEEKLMFSIPNVVDFEREMEETIQKGPIA 531
L+ + + A LH+ +++ A KL+ +PNV F+ +TI +
Sbjct: 102 VLVDEEVLKAIEEVSPLAPLHNPANLMGIK-AAMKLLPGVPNVAVFDTAFHQTIPQKAYL 160
Query: 532 ISLPY 536
++PY
Sbjct: 161 YAIPY 165
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 592 SSLGRLINLQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLS 651
+ L L L++L L ++ DI ++ +L KL+ LSL +I + + + LT+LQ L LS
Sbjct: 146 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLS 204
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 592 SSLGRLINLQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLS 651
+ L L L++L L ++ DI ++ +L KL+ LSL +I + + + LT+LQ L LS
Sbjct: 123 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLS 181
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 165 RKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNV----FDKVVM 216
R K Q VIE L N + G GVGKT + + +A+Q++ + V DK VM
Sbjct: 185 RSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 156 MKDYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIA 202
+KDY F +E + K +IG+ G G+GKTT VK +A
Sbjct: 294 VKDYGSFRLE-------VEPGEIKKGEVIGIVGPNGIGKTTFVKXLA 333
>pdb|3PNN|A Chain A, The Crystal Structure Of A Glycosyltransferase From
Porphyromonas Gingivalis W83
Length = 303
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 483 GDAEDEAKLHDVIHVVAASIAEEKLMFSIPNVVDFEREMEETI---QKGPIAISLPYRDI 539
G D + V + A +L+F I + FE+E E I +G I + L ++++
Sbjct: 29 GPGGDTIXDYSVYDAIRAGFG--RLVFVIRH--SFEKEFREKILTKYEGRIPVELVFQEL 84
Query: 540 QELPERLECPQ 550
LPE CP+
Sbjct: 85 DRLPEGFSCPE 95
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 165 RKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNV----FDKVVMA 217
R K Q VIE L N + G GVGKT + + +A+Q++ + V DK VM
Sbjct: 185 RSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
Query: 183 IIGVCGMGGVGKTTLVKQIAKQVM----EDN-VFDKVVMA 217
++G+ G G GKTT VK +A Q++ EDN +D V+ A
Sbjct: 119 VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRA 158
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 156 MKDYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIA 202
+KDY F +E + K +IG+ G G+GKTT VK +A
Sbjct: 364 VKDYGSFKLE-------VEPGEIRKGEVIGIVGPNGIGKTTFVKMLA 403
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
Query: 183 IIGVCGMGGVGKTTLVKQIAKQVM----EDN-VFDKVVMA 217
++G+ G G GKTT VK +A Q++ EDN +D V+ A
Sbjct: 105 VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRA 144
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 156 MKDYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIA 202
+KDY F +E + K +IG+ G G+GKTT VK +A
Sbjct: 350 VKDYGSFKLE-------VEPGEIRKGEVIGIVGPNGIGKTTFVKMLA 389
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 183 IIGVCGMGGVGKTTLVKQIAKQVM 206
I+GV G GVGKTT++K +A +++
Sbjct: 27 ILGVLGKNGVGKTTVLKILAGEII 50
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 19/144 (13%)
Query: 578 KVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQLPL 637
KV GI + L NL+ L L+G ++ DI+ + L KL L + +I +
Sbjct: 55 KVASIQGIEY---------LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS- 104
Query: 638 QIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGSNASLAELK 697
+ LT L+ L L N ++ I+P ++ L++ L +G + + D + L+
Sbjct: 105 ALQNLTNLRELYL-NEDNISDISP--LANLTKXYSLNLGANHNLSDL------SPLSNXT 155
Query: 698 GLSKLTTLEIDVRDAEMLRRIWSL 721
GL+ LT E V+D + + L
Sbjct: 156 GLNYLTVTESKVKDVTPIANLTDL 179
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 144 HPPPPKMREFGDMKDYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAK 203
H P PK E + I + K+ + +K K IG+ G GVGKT L++++
Sbjct: 119 HRPAPKFEELA--TEVEILETGIKVVDLLAPYIKGGK---IGLFGGAGVGKTVLIQELIH 173
Query: 204 QVMEDN 209
+ +++
Sbjct: 174 NIAQEH 179
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 592 SSLGRLINLQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLS 651
++L L L LD L + + G L L L L +++ LPL L L +LD+S
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108
Query: 652 NCSSLVVIAPNVISKLSRLEELYM 675
+ L + + L L+ELY+
Sbjct: 109 -FNRLTSLPLGALRGLGELQELYL 131
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 358 CGGLPVALSTVANALKNKSPAIWKDALNKLTSSNLREIHGMDADVYSPIKLSYDFLDD 415
CG L T++N +NK+PA DA+ ++ + +R +H D +V + + +L D
Sbjct: 155 CGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDDPEVLADTCWAISYLTD 212
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 358 CGGLPVALSTVANALKNKSPAIWKDALNKLTSSNLREIHGMDADVYSPIKLSYDFLDD 415
CG L T++N +NK+PA DA+ ++ + +R +H D +V + + +L D
Sbjct: 153 CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTD 210
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 358 CGGLPVALSTVANALKNKSPAIWKDALNKLTSSNLREIHGMDADVYSPIKLSYDFLDD 415
CG L T++N +NK+PA DA+ ++ + +R +H D +V + + +L D
Sbjct: 149 CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTD 206
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 358 CGGLPVALSTVANALKNKSPAIWKDALNKLTSSNLREIHGMDADVYSPIKLSYDFLDD 415
CG L T++N +NK+PA DA+ ++ + +R +H D +V + + +L D
Sbjct: 154 CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTD 211
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,929,750
Number of Sequences: 62578
Number of extensions: 890436
Number of successful extensions: 2742
Number of sequences better than 100.0: 80
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 2662
Number of HSP's gapped (non-prelim): 104
length of query: 724
length of database: 14,973,337
effective HSP length: 106
effective length of query: 618
effective length of database: 8,340,069
effective search space: 5154162642
effective search space used: 5154162642
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)